Psyllid ID: psy4039

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------59
Protein Sequence
MSLRTLLFRFYHNGKLLVRYIKPLQPGHKIEFLTQPPATSSGQGRLSAPAGHPIQTYFQNARKLFVNSLLNRVTNSMASDLRRKTIQQLLYKDNSKPFLAFVGVSLASGTGILTNRVTNSMASDLRRKTLQQLLYKDNSKPFLAFVGVSLASGTGILTKEDEFEGVCWEIRHAVNNMFDKLVQVETLPDVDDVKVDDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGATPSHNEIMQWLLTLTTKVLCTGVSYGGHVRRTFVEYQLISTFLKRAEFRLITNALQYIQRVLTPKPLV
Secondary Structure (PSIPRED)
ccHHHHHHHHHHcccEEEEccccccccccccccccccccccccccccccccccccHHccHHHHHHHHHccccccccccHHHHHHHHHHHHccccccccHHHHccccccccccccccccccccHHHHHHHHHHHHccccccccHHccccccccccccccccHHcccHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEEEEEcccEEEEEEEEcccccccHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccccEEEEEEEEEcccccccccccccccccccccccccccccccEEEEEEEcccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccHHHHHcccccccccccccccHHHHHHHHHHHHHcccccccccccccHHHHHccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHcccEEEEcccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccHcccccccHHHHHHcHHHHHHHHccccccccEEEEccccccEEEcHHHcccccccccHHHHHHHHHccccccccEEEEEEHcccccccccccHcccccHcccccccccccccccccccccccccEcccEEEEEEEcccccEEEEEEEccccEEEEEEEccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEcccccccHHHHccccccEccEEHHHHHcccccEEEEEEEEcccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHEEEcccccccccEEEEEccccccccccccccccccccccccccHHHccHHHHHccccccHHccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccccccHHHHHHHHHHHcccccccccHHHHHccccHEcccccccccccccccHHHHHHHHHHcHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
MSLRTLLFRFYHNGKLLVRYikplqpghkiefltqppatssgqgrlsapaghpiqTYFQNARKLFVNSLLNRVTNSMASDLRRKTIQQLLykdnskpfLAFVGVSLasgtgiltnrvtnsmaSDLRRKTLQQLLykdnskpfLAFVGVSLasgtgiltkedefeGVCWEIRHAVNNMFDKLVQvetlpdvddvkvddiqIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKEllplrkplrlNEDMLMNSvenlpphpnvvVMHFAftdfvpsipdssliypsalparlnptggygrnMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVthlnmhrtahrdlksdnilldcsedntcpqlvitdfgssytnksglsmqyssadielggnvalmapevalatpglfsfvnysksdawtaGTVAYEifghdnpfyqsarntdyevnalpqlntnVPEVMRRLVAKLLendpsdrpsaELAATVCQLYLwapkhwlygatpshNEIMQWLLTLTTKVLctgvsygghvrRTFVEYQLISTFLKRAEFRLITNALQYIQRVLTPKPLV
Flexible Loop (DISEMBL)
MSLRTLLFRFYHNGKLLVRYIKPLQPGHKIEFLTQPPATSSGQGRLSAPAGHPIQTYFQNARKLFVNSLLNRVTNSMASDLRRKTIQQLLYKDNSKPFLAFVGVSLasgtgiltnrvtnsmasdLRRKTLQQLLYKDNSKPFLAFVGVSLASGTGILTKEDEFEGVCWEIRHAVNNMFDKLVQVETLPDVDDVKVDDIQIgkfiakgtnavvYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGATPSHNEIMQWLLTLTTKVLCTGVSYGGHVRRTFVEYQLISTFLKRAEFRLITNALQYiqrvltpkplv
Low Complexity Region (SEG)
MSLRTLLFRFYHNGKLLVRYIKPLQPGHKIEFLTQPPATSSGQGRLSAPAGHPIQTYFQNARKLFVNSLLNRVTNSMASDLRRKTIQQLLYKDNSKPFLAFVGVSLASGTGILTNRVTNSMASDLRRKTLQQLLYKDNSKPFLAFVGVSLASGTGILTKEDEFEGVCWEIRHAVNNMFDKLVQVETLPdvddvkvddIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSkellplrkplrlneDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGATPSHNEIMQWLLTLTTKVLCTGVSYGGHVRRTFVEYQLISTFLKRAEFRLITNALQYIQRVLTPKPLV
Disordered region (IsUnstruct)
***RTLLFRFYHNGKLLVRYIKPLQPGHKIEFL*******************PIQTYFQNARKLFVNSLLNRVTNSMASDLRRKTIQQLLYKDNSKPFLAFVGVSLASGTGILTNRVTNSMASDLRRKTLQQLLYKDNSKPFLAFVGVSLASGTGILTKEDEFEGVCWEIRHAVNNMFDKLVQVETLPDVDDVKVDDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLL**********ELAATVCQLYLWAPKHWLYGATPSHNEIMQWLLTLTTKVLCTGVSYGGHVRRTFVEYQLISTFLKRAEFRLITNALQYIQRVL******
Disordered Region (DISOPRED)
*SLRTLLFRFYHNGKLLVRYIK****************************************************************************************************************************************************************************VDDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYS***************LLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPK***************************************VEYQLISTFLKRAEFRLITNALQYIQRVLTPKP*V
Disordered Region (DISEMBL)
MSLRTLLFRFYHNGKLLVRYIKPLQPGHKIEFLTQP***********APAGHPIQTYFQNARKLFVNSLLNRVTNSMASDLRRKTIQQLLYKDNSKPFLAFVGVSLASGTGILTNRVTNSMASDLRRKTLQQLLYKDNSKPFLAFVGVSLASGTGILTKEDEFEGVCWEIRHAVNNMFDKLVQVETLPDVDDVKVDDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGATPSHNEIMQWLLTLTTKVLCTGVSYGGHVRRTFVEYQLISTFLKRAEFRLITNALQYIQRVLTPKPLV
Disordered Region (DISPRO)
*SLRTLLFRFYHNGKLLVRYIKPLQPGHKIEFLTQPPATSSGQGRLSAPAGHPIQTYFQNARKLFVNSLLNRVTNSMASDLRRKTIQQLLYKDNSKPFLAFVGVSLASGTGILTNRVTNSMASDLRRKTLQQLLYKDNSKPFLAFVGVSLASGTGILTK***FE***************************DVKVDDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGATPSHNEIMQWLLTLTTKVLCTGVSYGGHVRRTFVEYQLISTFLKRAEFRLITNALQYIQRVLTP****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLRTLLFRFYHNGKLLVRYIKPLQPGHKIEFLTQPPATSSGQGRLSAPAGHPIQTYFQNARKLFVNSLLNRVTNSMASDLRRKTIQQLLYKDNSKPFLAFVGVSLASGTGILTNRVTNSMASDLRRKTLQQLLYKDNSKPFLAFVGVSLASGTGILTKEDEFEGVCWEIRHAVNNMFDKLVQVETLPDVDDVKVDDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGATPSHNEIMQWLLTLTTKVLCTGVSYGGHVRRTFVEYQLISTFLKRAEFRLITNALQYIQRVLTPKPLV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	588	2.2.26 [Sep-21-2011]
Q99MQ3	580	Serine/threonine-protein	yes	N/A	0.707	0.717	0.355	9e-64
Q9BXM7	581	Serine/threonine-protein	yes	N/A	0.576	0.583	0.389	6e-60
Q09298	641	Serine/threonine-protein	yes	N/A	0.534	0.489	0.315	7e-42
P31325	406	Phosphorylase b kinase ga	yes	N/A	0.421	0.610	0.275	1e-11
Q9DB30	406	Phosphorylase b kinase ga	no	N/A	0.421	0.610	0.271	1e-11
Q9BXA6	273	Testis-specific serine/th	no	N/A	0.299	0.644	0.300	1e-11
P84390	382	Serine/threonine-protein	no	N/A	0.314	0.484	0.247	2e-11
P28926	382	Serine/threonine-protein	no	N/A	0.314	0.484	0.247	2e-11
P32516	382	Serine/threonine-protein	no	N/A	0.314	0.484	0.247	2e-11
Q925K9	273	Testis-specific serine/th	no	N/A	0.290	0.626	0.293	3e-11

>sp|Q99MQ3|PINK1_MOUSE Serine/threonine-protein kinase PINK1, mitochondrial OS=Mus musculus GN=Pink1 PE=2 SV=2

 Score =  245 bits (625), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 171/481 (35%), Positives = 240/481 (49%), Gaps = 65/481 (13%)

Query: 148 VSLASGTGI-LTKEDEFEG-----VCWEIRHAVNNMFDKLVQVETLPDVDDVKVDDIQIG 201
           V LA G G+ L +E + EG      C EI+        ++            +++D  IG
Sbjct: 100 VFLAFGLGLGLIEEKQAEGRRAASACQEIQAIFTQKTKRVSDPLDTRCWQGFRLEDYLIG 159

Query: 202 KFIAKGTNAVVYEAT------------------------FRGVE-----------YALKM 226
           + I KG NA VYEAT                         +G +           +A+KM
Sbjct: 160 QAIGKGCNAAVYEATMPTLPQHLEKAKHLGLIGKGPDVVLKGADGEQAPGTPTFPFAIKM 219

Query: 227 MFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLM------NSVENLPPHPNVVVMHFA 280
           M+N SA S+S AIL  MS+EL+P  +     E   +      +  + L PHPN++ +  A
Sbjct: 220 MWNISAGSSSEAILSKMSQELVPASRVALAGEYGAVTYRRSRDGPKQLAPHPNIIRVFRA 279

Query: 281 FTDFVPSIPDSSLIYPSALPARLNPTG-GYGRNMSLFILMKKYNTDLRNYLRERCAQLSM 339
           FT  VP +P +   YP  LP    P G G+GR  +LF++MK Y   LR YL E+    S 
Sbjct: 280 FTSSVPLLPGALADYPDMLPPHYYPEGLGHGR--TLFLVMKNYPCTLRQYLEEQTP--SS 335

Query: 340 HERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKS-G 398
               ++  QLLEGV HL     AHRDLKSDNIL++   D  CP LVI+DFG    ++  G
Sbjct: 336 RLATMMTLQLLEGVDHLVQQGIAHRDLKSDNILVEWDSDG-CPWLVISDFGCCLADQHVG 394

Query: 399 LSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQ 458
           L + ++S+ +E GGN +LMAPEV+ A  G  + ++YSK+D W  G +AYEIFG  NPFY 
Sbjct: 395 LRLPFNSSSVERGGNGSLMAPEVSTAHSGPSAVIDYSKADTWAVGAIAYEIFGLANPFYG 454

Query: 459 SA----RNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPK 514
                  +  Y+   LP++  +VP   RRLV  LL+ + S RPSA LAA V  L LW  +
Sbjct: 455 QGSAHLESRSYQEAQLPEMPESVPPEARRLVRSLLQREASKRPSARLAANVLHLSLWG-E 513

Query: 515 HWLYGATPSHNEIMQWLLTLTTKVLCTGVSYGGHVR-RTFVEYQLISTFLKRAEFRLITN 573
           H L       ++++ WLL  +   L         +R ++ VE +L   FL   E   +  
Sbjct: 514 HLLALKNLKLDKMIAWLLQQSAATLLA-----DRLREKSCVETKLQMLFLANLECEALCQ 568

Query: 574 A 574
           A
Sbjct: 569 A 569

Protects against mitochondrial dysfunction during cellular stress, potentially by phosphorylating mitochondrial proteins (By similarity). Involved in the clearance of damaged mitochondria via selective autophagy (mitophagy) (By similarity). It is necessary for PARK2 recruitment to dysfunctional mitochondria to initiate their degradation.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9BXM7|PINK1_HUMAN Serine/threonine-protein kinase PINK1, mitochondrial OS=Homo sapiens GN=PINK1 PE=1 SV=1

 Score =  232 bits (592), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 154/395 (38%), Positives = 211/395 (53%), Gaps = 56/395 (14%)

Query: 194 KVDDIQIGKFIAKGTNAVVYEATF------------------RG---------------- 219
           ++++  IG+ I KG +A VYEAT                   RG                
Sbjct: 152 RLEEYLIGQSIGKGCSAAVYEATMPTLPQNLEVTKSTGLLPGRGPGTSAPGEGQERAPGA 211

Query: 220 --VEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMN------SVENLPPH 271
                A+KMM+N SA S+S AIL  MS+EL+P  +     E   +         + L PH
Sbjct: 212 PAFPLAIKMMWNISAGSSSEAILNTMSQELVPASRVALAGEYGAVTYRKSKRGPKQLAPH 271

Query: 272 PNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTG-GYGRNMSLFILMKKYNTDLRNYL 330
           PN++ +  AFT  VP +P + + YP  LP+RL+P G G+GR  +LF++MK Y   LR YL
Sbjct: 272 PNIIRVLRAFTSSVPLLPGALVDYPDVLPSRLHPEGLGHGR--TLFLVMKNYPCTLRQYL 329

Query: 331 RERCAQL-SMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDF 389
              C    S     ++  QLLEGV HL     AHRDLKSDNIL++   D  CP LVI DF
Sbjct: 330 ---CVNTPSPRLAAMMLLQLLEGVDHLVQQGIAHRDLKSDNILVELDPDG-CPWLVIADF 385

Query: 390 GSSYTNKS-GLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYE 448
           G    ++S GL + +SS  ++ GGN  LMAPEV+ A PG  + ++YSK+DAW  G +AYE
Sbjct: 386 GCCLADESIGLQLPFSSWYVDRGGNGCLMAPEVSTARPGPRAVIDYSKADAWAVGAIAYE 445

Query: 449 IFGHDNPFYQSAR----NTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAAT 504
           IFG  NPFY   +    +  Y+   LP L  +VP  +R+LV  LL+ + S RPSA +AA 
Sbjct: 446 IFGLVNPFYGQGKAHLESRSYQEAQLPALPESVPPDVRQLVRALLQREASKRPSARVAAN 505

Query: 505 VCQLYLWAPKHWLYGATPSHNEIMQWLLTLTTKVL 539
           V  L LW  +H L       ++++ WLL  +   L
Sbjct: 506 VLHLSLWG-EHILALKNLKLDKMVGWLLQQSAATL 539

Protects against mitochondrial dysfunction during cellular stress, potentially by phosphorylating mitochondrial proteins. Involved in the clearance of damaged mitochondria via selective autophagy (mitophagy). It is necessary for PARK2 recruitment to dysfunctional mitochondria to initiate their degradation.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q09298|PINK1_CAEEL Serine/threonine-protein kinase pink-1, mitochondrial OS=Caenorhabditis elegans GN=pink-1 PE=3 SV=2

 Score =  172 bits (436), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 112/355 (31%), Positives = 170/355 (47%), Gaps = 41/355 (11%)

Query: 194 KVDDIQIGKFIAKGTNAVVYEA------------TFRGVEY------------------- 222
           ++D  + G+F+ +G NA VY A            T  G  +                   
Sbjct: 133 RIDSYEFGEFLGQGCNAAVYSARLANSDAESSGNTHYGAGFNEVTNILAEIPPVSKVAQK 192

Query: 223 ----ALKMMFNYSAASNSHA-ILKAMSKELLPLRKPLRLNEDMLMNSVENLPP-HPNVVV 276
               A+K+MFN+    +  A +LK+M  EL P     +L     M +   LP  HPNVV 
Sbjct: 193 KFPLAIKLMFNFEHDRDGDAHLLKSMGNELAPYPNAAKLLNGQ-MGTFRPLPAKHPNVVR 251

Query: 277 MHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQ 336
           +  AF D +  +PD+   YP AL              +++++M++Y   L  Y+  R   
Sbjct: 252 IQTAFIDSLKVLPDAIERYPDALHTARWYESIASEPKTMYVVMRRYRQTLHEYVWTRHRN 311

Query: 337 LSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNK 396
                  ++  QLLE  T+L+ H+ A RD+KSDNILL+   D+  PQLV+ DFG +    
Sbjct: 312 YWTGR--VIIAQLLEACTYLHKHKVAQRDMKSDNILLEYDFDDEIPQLVVADFGCALACD 369

Query: 397 SGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPF 456
           +   + Y S ++ LGGN    APE+A A PG    VN+  +D W AG ++YE+    NPF
Sbjct: 370 N-WQVDYESDEVSLGGNAKTKAPEIATAVPGKNVKVNFEMADTWAAGGLSYEVLTRSNPF 428

Query: 457 YQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLW 511
           Y+      Y+ + LP L + V  V R ++  LL+ DP++R    +AA    L L+
Sbjct: 429 YKLLDTATYQESELPALPSRVNFVARDVIFDLLKRDPNERVKPNIAANALNLSLF 483

Protects against mitochondrial dysfunction during cellular stress, potentially by phosphorylating mitochondrial proteins.

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P31325|PHKG2_RAT Phosphorylase b kinase gamma catalytic chain, liver/testis isoform OS=Rattus norvegicus GN=Phkg2 PE=1 SV=1

 Score = 72.4 bits (176), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 136/309 (44%), Gaps = 61/309 (19%)

Query: 203 FIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDM 260
            I +G ++VV     R  G E+A+K+M   SA   S        ++L  +R   R     
Sbjct: 29  IIGRGVSSVVRRCVHRATGDEFAVKIM-EVSAERLS-------LEQLEEVRDATRRE--- 77

Query: 261 LMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMK 320
            M+ +  +  HP+++ +       + S   SS ++                   +F LM+
Sbjct: 78  -MHILRQVAGHPHIITL-------IDSYESSSFMF------------------LVFDLMR 111

Query: 321 KYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNT 380
           K   +L +YL E+ A LS  E   +   LLE V  L+++   HRDLK +NILLD   DN 
Sbjct: 112 K--GELFDYLTEKVA-LSEKETRSIMRSLLEAVNFLHVNNIVHRDLKPENILLD---DNM 165

Query: 381 CPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DA 439
             Q+ ++DFG S   + G  ++      EL G    +APE+ L      +   Y K  D 
Sbjct: 166 --QIRLSDFGFSCHLEPGEKLR------ELCGTPGYLAPEI-LKCSMDETHPGYGKEVDL 216

Query: 440 WTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPE------VMRRLVAKLLENDP 493
           W  G + + +     PF+   +     +    Q   + PE       ++ L+AKLL+ DP
Sbjct: 217 WACGVILFTLLAGSPPFWHRRQILMLRMIMEGQYQFSSPEWDDRSNTVKDLIAKLLQVDP 276

Query: 494 SDRPSAELA 502
           + R +AE A
Sbjct: 277 NARLTAEQA 285

Catalytic subunit of the phosphorylase b kinase (PHK), which mediates the neural and hormonal regulation of glycogen breakdown (glycogenolysis) by phosphorylating and thereby activating glycogen phosphorylase (PYGB, PYGL or PYGM). May regulate glycogeneolysis in the testis. In vitro, phosphorylates TNNI3, TNNT2, MAPT/TAU, GAP43 and NRGN/RC3.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q9DB30|PHKG2_MOUSE Phosphorylase b kinase gamma catalytic chain, liver/testis isoform OS=Mus musculus GN=Phkg2 PE=2 SV=2

 Score = 72.0 bits (175), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 135/309 (43%), Gaps = 61/309 (19%)

Query: 203 FIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDM 260
            I +G ++VV     R  G E+A+K+M   SA   S        ++L  +R   R     
Sbjct: 29  IIGRGVSSVVRRCVHRATGDEFAVKIM-EVSAERLS-------LEQLEEVRDATRRE--- 77

Query: 261 LMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMK 320
            M+ +  +  HP+++ +       + S   SS ++                   +F LM+
Sbjct: 78  -MHILRQVAGHPHIITL-------IDSYESSSFMF------------------LVFDLMR 111

Query: 321 KYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNT 380
           K   +L +YL E+ A LS  E   +   LLE V+ L+ +   HRDLK +NILLD   DN 
Sbjct: 112 K--GELFDYLTEKVA-LSEKETRSIMRSLLEAVSFLHANNIVHRDLKPENILLD---DNM 165

Query: 381 CPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DA 439
             Q+ ++DFG S   ++G  ++      EL G    +APE+ L      +   Y K  D 
Sbjct: 166 --QIRLSDFGFSCHLEAGEKLR------ELCGTPGYLAPEI-LKCSMDETHPGYGKEVDL 216

Query: 440 WTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPE------VMRRLVAKLLENDP 493
           W  G + + +     PF+   +     +    Q     PE       ++ L++KLL+ DP
Sbjct: 217 WACGVILFTLLAGSPPFWHRRQILMLRMIMEGQYQFTSPEWDDRSNTVKDLISKLLQVDP 276

Query: 494 SDRPSAELA 502
             R +AE A
Sbjct: 277 EARLTAEQA 285

Catalytic subunit of the phosphorylase b kinase (PHK), which mediates the neural and hormonal regulation of glycogen breakdown (glycogenolysis) by phosphorylating and thereby activating glycogen phosphorylase (PYGB, PYGL or PYGM). May regulate glycogeneolysis in the testis. In vitro, phosphorylates TNNI3, TNNT2, MAPT/TAU, GAP43 and NRGN/RC3.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q9BXA6|TSSK6_HUMAN Testis-specific serine/threonine-protein kinase 6 OS=Homo sapiens GN=TSSK6 PE=1 SV=1

 Score = 72.0 bits (175), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 89/206 (43%), Gaps = 30/206 (14%)

Query: 312 NMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNI 371
           N  L+I+M+   TDL   + +R  ++   +   LF Q+   V +L+ H   HRDLK +N+
Sbjct: 83  NGKLYIVMEAAATDLLQAV-QRNGRIPGVQARDLFAQIAGAVRYLHDHHLVHRDLKCENV 141

Query: 372 LLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF 431
           LL  S D    +L    FG        LS  Y        G+ A  +PEV L  P     
Sbjct: 142 LL--SPDERRVKLTDFGFGRQAHGYPDLSTTYC-------GSAAYASPEVLLGIP----- 187

Query: 432 VNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNT---------NVPEVMR 482
            +  K D W+ G V Y +     PF       D ++  LP+             + E  +
Sbjct: 188 YDPKKYDVWSMGVVLYVMVTGCMPF------DDSDIAGLPRRQKRGVLYPEGLELSERCK 241

Query: 483 RLVAKLLENDPSDRPSAELAATVCQL 508
            L+A+LL+  PS RPSA   A  C L
Sbjct: 242 ALIAELLQFSPSARPSAGQVARNCWL 267

Required for sperm production and function. Plays a role in DNA condensation during postmeiotic chromatin remodeling.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P84390|US03_EHV1V Serine/threonine-protein kinase US3 homolog OS=Equine herpesvirus 1 (strain V592) GN=69 PE=3 SV=1

 Score = 71.6 bits (174), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 105/214 (49%), Gaps = 29/214 (13%)

Query: 257 NEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLF 316
           +E  +M + ++  P P V+ +    T  + ++   ++ +PS +  +     G    M   
Sbjct: 103 SEGRVMVATKDGQPEPVVLKIGQKGTTLIEAMMLRNVNHPSVIQMKDTLVSGAITCM--- 159

Query: 317 ILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCS 376
            ++  Y++DL  +L +   ++ + + +++  Q+LEG+ +L+  R  HRD+K++NI +   
Sbjct: 160 -VLPHYSSDLYTFLTKESRRIPIDQALIIEKQILEGLRYLHAQRIIHRDVKTENIFI--- 215

Query: 377 EDNTCPQLVITDFGSSYTNKSGLSMQY---SSADIELGGNVALMAPEVALATPGLFSFVN 433
             N+  Q+ I DFG++         Q+     AD+ L G V   APEV        +   
Sbjct: 216 --NSVDQVCIADFGAA---------QFPVVEPADLGLAGTVETNAPEV-------LARAK 257

Query: 434 Y-SKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE 466
           Y SK+D W+AG V +E+  + +  ++   +T  E
Sbjct: 258 YNSKADIWSAGIVLFEMLAYPSTLFEDPPSTPEE 291

Multifunctional serine/threonine kinase that plays a role in several processes including egress of virus particles from the nucleus, modulation of the actin cytoskeleton and inhibition of apoptosis. Phosphorylates UL31 and UL34, two critical regulators of capsid budding from nucleus to endoplasmic reticulum, thereby facilitating virion egress. Modulates and redistributes host components of the nuclear envelope, including LMNA, emerin/EMD and the nuclear matrix protein MATR3. Phosphorylates envelope glycoprotein B (gB), probably to direct it to the cell surface. Promotes virus intracellular spread by restructuring host cell cytoskeleton. Blocks host apoptosis to extend cell survival and allow efficient viral replication. Promotes viral gene expression by phosphorylating host HDAC2 to reduce viral genome silencing.

Equus caballus (taxid: 9796)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P28926|US03_EHV1B Serine/threonine-protein kinase US3 homolog OS=Equine herpesvirus 1 (strain Ab4p) GN=69 PE=3 SV=1

 Score = 71.6 bits (174), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 105/214 (49%), Gaps = 29/214 (13%)

Query: 257 NEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLF 316
           +E  +M + ++  P P V+ +    T  + ++   ++ +PS +  +     G    M   
Sbjct: 103 SEGRVMVATKDGQPEPVVLKIGQKGTTLIEAMMLRNVNHPSVIQMKDTLVSGAITCM--- 159

Query: 317 ILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCS 376
            ++  Y++DL  +L +   ++ + + +++  Q+LEG+ +L+  R  HRD+K++NI +   
Sbjct: 160 -VLPHYSSDLYTFLTKESRRIPIDQALIIEKQILEGLRYLHAQRIIHRDVKTENIFI--- 215

Query: 377 EDNTCPQLVITDFGSSYTNKSGLSMQY---SSADIELGGNVALMAPEVALATPGLFSFVN 433
             N+  Q+ I DFG++         Q+     AD+ L G V   APEV        +   
Sbjct: 216 --NSVDQVCIADFGAA---------QFPVVEPADLGLAGTVETNAPEV-------LARAK 257

Query: 434 Y-SKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE 466
           Y SK+D W+AG V +E+  + +  ++   +T  E
Sbjct: 258 YNSKADIWSAGIVLFEMLAYPSTLFEDPPSTPEE 291

Multifunctional serine/threonine kinase that plays a role in several processes including egress of virus particles from the nucleus, modulation of the actin cytoskeleton and inhibition of apoptosis. Phosphorylates protein 26 and 29, two critical regulators of capsid budding from nucleus to endoplasmic reticulum, thereby facilitating virion egress. Modulates and redistributes host components of the nuclear envelope, including LMNA, emerin/EMD and the nuclear matrix protein MATR3. Phosphorylates envelope glycoprotein B (gB), probably to direct it to the cell surface. Promotes virus intracellular spread by restructuring host cell cytoskeleton. Blocks host apoptosis to extend cell survival and allow efficient viral replication. Promotes viral gene expression by phosphorylating host HDAC2 to reduce viral genome silencing.

Equus caballus (taxid: 9796)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P32516|KR1_EHV1K Serine/threonine-protein kinase OS=Equine herpesvirus 1 (strain Kentucky A) GN=US2 PE=3 SV=1

 Score = 71.2 bits (173), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 105/214 (49%), Gaps = 29/214 (13%)

Query: 257 NEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLF 316
           +E  +M + ++  P P V+ +    T  + ++   ++ +PS +  +     G    M   
Sbjct: 103 SEGRVMVATKDGQPEPVVLKIGQKGTTLIEAMMLRNVNHPSVIQMKDTLVSGAITCM--- 159

Query: 317 ILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCS 376
            ++  Y++DL  +L +   ++ + + +++  Q+LEG+ +L+  R  HRD+K++NI +   
Sbjct: 160 -VLPHYSSDLYTFLTKESRRIPIDQALIIEKQILEGLRYLHAQRIIHRDVKTENIFI--- 215

Query: 377 EDNTCPQLVITDFGSSYTNKSGLSMQY---SSADIELGGNVALMAPEVALATPGLFSFVN 433
             N+  Q+ I DFG++         Q+     AD+ L G V   APEV        +   
Sbjct: 216 --NSVDQVCIADFGAA---------QFPVVEPADLGLAGTVETNAPEV-------LARAK 257

Query: 434 Y-SKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE 466
           Y SK+D W+AG V +E+  + +  ++   +T  E
Sbjct: 258 YNSKADIWSAGIVLFEMLAYPSTLFEDPPSTPEE 291

Equus caballus (taxid: 9796)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q925K9|TSSK6_MOUSE Testis-specific serine/threonine-protein kinase 6 OS=Mus musculus GN=Tssk6 PE=2 SV=1

 Score = 70.9 bits (172), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 89/201 (44%), Gaps = 30/201 (14%)

Query: 312 NMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNI 371
           N  L+I+M+   TDL   + +R  ++   +   LF+Q+   V +L+ H   HRDLK +N+
Sbjct: 83  NGKLYIVMEAAATDLLQAV-QRNGRIPGSQARELFSQIAGAVRYLHDHHLVHRDLKCENV 141

Query: 372 LLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF 431
           LL   E     ++ ITDFG         +  Y        G+ A  +PEV L  P     
Sbjct: 142 LLSPDER----RVKITDFGFGRQ-----AHGYPDLSTTYCGSAAYASPEVLLGIP----- 187

Query: 432 VNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNT---------NVPEVMR 482
            +  K D W+ G V Y +     PF       D ++  LP+             + E  +
Sbjct: 188 YDPKKYDVWSLGVVLYVMVTGCMPF------DDSDIAGLPRRQKRGVLYPDGLELSERCK 241

Query: 483 RLVAKLLENDPSDRPSAELAA 503
            L+A+LL+  PS RPSA   A
Sbjct: 242 SLIAELLQFSPSARPSAGQVA 262

Required for sperm production and function. Plays a role in DNA condensation during postmeiotic chromatin remodeling.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	588
193627302	578	PREDICTED: serine/threonine-protein kina	0.780	0.794	0.465	1e-125
156555444	614	PREDICTED: serine/threonine-protein kina	0.901	0.863	0.413	1e-120
340729581	613	PREDICTED: serine/threonine-protein kina	0.785	0.753	0.480	1e-120
350411252	613	PREDICTED: serine/threonine-protein kina	0.785	0.753	0.480	1e-120
66545638	614	PREDICTED: serine/threonine-protein kina	0.780	0.747	0.463	1e-119
307190440	612	Serine/threonine-protein kinase PINK1, m	0.784	0.753	0.461	1e-119
332030037	614	Serine/threonine-protein kinase PINK1, m	0.904	0.866	0.407	1e-118
380018787	614	PREDICTED: serine/threonine-protein kina	0.780	0.747	0.461	1e-118
383859216	613	PREDICTED: serine/threonine-protein kina	0.784	0.752	0.469	1e-117
91083675	570	PREDICTED: similar to serine/threonine p	0.785	0.810	0.487	1e-115

>gi|193627302|ref|XP_001946944.1| PREDICTED: serine/threonine-protein kinase PINK1, mitochondrial-like [Acyrthosiphon pisum]

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 239/513 (46%), Positives = 322/513 (62%), Gaps = 54/513 (10%)

Query: 113 LTNRVTNSMASDLRRKTLQQLLYKDNSKPFLAFVGVSLASGTGILTKEDEFEGVCWEIRH 172
           L +RVTNS+++DLRR+T + L+Y  NS+PF A VGVSLASG G+LT E++ EGVCWEIR 
Sbjct: 73  LLSRVTNSLSADLRRRTARHLMY-GNSRPFFALVGVSLASGNGMLTNENQLEGVCWEIRE 131

Query: 173 AVNNMFDKLVQVETLPDVDDVKVDDIQIGKFIAKGTNAVVYEATFRGVE----------- 221
           AV  M   L   E L     + +   ++G  IAKG NAVVYEA  R +E           
Sbjct: 132 AVGRMQKNLTVAERLKLNSSLGLKQFELGSVIAKGNNAVVYEA--RKIEKDRDPSDVIKQ 189

Query: 222 --------YALKMMFNYSAASNSHAILKAMSKELLPLRK------------PLRLNEDML 261
                    A+KMMFNY A SN+ +IL+AMS+E +P R             P+  +++++
Sbjct: 190 GSSNTMYPLAVKMMFNYDAESNAMSILRAMSRETVPSRSVQHDFSRSDQQWPIGYDQNLI 249

Query: 262 MNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKK 321
                 L PHPN+V+MH  F D+VP + DS  +YP ALP R+NP  GYGRNMSLF++MKK
Sbjct: 250 -----KLSPHPNIVMMHLCFADYVPELIDSHTLYPQALPTRINPE-GYGRNMSLFLVMKK 303

Query: 322 YNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDN-T 380
           Y+  L+ YL  +   L + +++LL  QLLE V+HL+    AHRD+K+DNILLD SE N  
Sbjct: 304 YDMSLKQYL-SKAPSLKIRDKILLLAQLLEAVSHLSNQNVAHRDMKTDNILLDVSEGNDV 362

Query: 381 CPQLVITDFGSSYTNK-SGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDA 439
           CP LVITDFG    +K +GL++ Y SAD + GGN+ALMAPEV  A PG F +++YSK+D 
Sbjct: 363 CPALVITDFGCCLADKDNGLNLPYKSADTDRGGNIALMAPEVVTARPGTFGYIDYSKADV 422

Query: 440 WTAGTVAYEIFGHDNPFYQSA-------RNTDYEVNALPQLNTNVPEVMRRLVAKLLEND 492
           W  G +AYEIF  +NPFY          RN+ Y+   LP  ++++P +++ L+  LL+  
Sbjct: 423 WAVGAMAYEIFSDNNPFYSYERGKPPLLRNSTYKEEDLPAFSSDIPLIIQTLIHSLLQRS 482

Query: 493 PSDRPSAELAATVCQLYLWAPKHWLYG-ATPSHNEIMQWLLTLTTKVLCTG---VSYGGH 548
            S R  A  AATVCQ+YLWAP  W+     P+ NE++QW+L LTTKVLC G   +S    
Sbjct: 483 TSKRLDASFAATVCQIYLWAPSSWITKYVMPTSNEVLQWMLCLTTKVLCEGGTMMSTSST 542

Query: 549 VRRTFVEYQLISTFLKRAEFRLITNALQYIQRV 581
            +RT  EYQLI+TFL RA+   I NAL ++  +
Sbjct: 543 KQRTCTEYQLITTFLHRAKLYEIKNALYWMHSI 575

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156555444|ref|XP_001605979.1| PREDICTED: serine/threonine-protein kinase PINK1, mitochondrial-like [Nasonia vitripennis]

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 273/660 (41%), Positives = 360/660 (54%), Gaps = 130/660 (19%)

Query: 1   MSLRTLLFRFYHNGKLLVRYIKPLQ------PGHKIEFLTQPPATSSGQ-----GRLSAP 49
           MS+RT   R   +G+LL+R ++  +       GH  +        S G      G +S+ 
Sbjct: 1   MSIRTAAQRLIQDGRLLLRSLRNPEHYRNTTRGHFNKIHVARVGESQGHVPKGTGDVSSA 60

Query: 50  AGHPIQTYFQNARKLFVNSLLNRVTNSMASDLRRKTIQQLLYKDNSKPFLAFVGVSLASG 109
             H +      AR+LFV+S+L RVTN++A+DLRR+   +LL+  +S PF A VG+SLASG
Sbjct: 61  RSH-LGFLGAQARRLFVDSILKRVTNTLAADLRRRAASRLLFGGDSAPFFALVGISLASG 119

Query: 110 TGILTNRVTNSMASDLRRKTLQQLLYKDNSKPFLAFVGVSLASGTGILTKEDEFEGVCWE 169
           TGI                                            LTKEDE EGVCWE
Sbjct: 120 TGI--------------------------------------------LTKEDELEGVCWE 135

Query: 170 IRHAVNNM------FDKLVQVETLPDVDDVKVDDIQIGKFIAKGTNAVVYEATFRGVE-- 221
           IR AV  +       DK  +  TL D + + + +  IG  IAKG +AVVY A  +  +  
Sbjct: 136 IREAVMKLQWNKPRNDKNYET-TLTDDNQISLQNFVIGPLIAKGCSAVVYAARTKNSDDN 194

Query: 222 ------------------YALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDM--- 260
                              A+KMMFNY A SN+ AIL+AM +E +P  K  + NE++   
Sbjct: 195 QNSEEITIDRSSNITSFPLAIKMMFNYDAESNATAILRAMFRETVPAWKHYK-NEELSHW 253

Query: 261 ---LMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFI 317
              + ++ + LP H N+V M+  F D VP +P S  +YP ALPARLNP G  GRNMSLF+
Sbjct: 254 EQKMADNKKTLPAHSNIVAMYSVFADRVPFLPGSIKMYPDALPARLNPEGS-GRNMSLFL 312

Query: 318 LMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSE 377
           LMK+Y+  L+ Y+ +R  QL+  E +LLF QLLEGV H+N H  AHRDLK+DNILLD SE
Sbjct: 313 LMKRYDVTLKQYVSDR--QLNTRESILLFAQLLEGVAHMNSHGIAHRDLKADNILLDISE 370

Query: 378 D-NTCPQLVITDFGSSYTNKS-GLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS 435
           + + CP LVITDFG    +K+ GL + Y++ D + GGN ALMAPE+  A PG F+ +NY+
Sbjct: 371 ESDNCPTLVITDFGCCLADKNHGLYLPYNTHDTDKGGNAALMAPEIVTAEPGPFTSLNYT 430

Query: 436 KSDAWTAGTVAYEIFGHDNPFYQSA------RNTDYEVNALPQLNTNVPEVMRRLVAKLL 489
           KSD WT GT+AYEIFG  NPFY S       +N DY+V  LP L   VPE++  LV  +L
Sbjct: 431 KSDLWTVGTIAYEIFGMKNPFYGSVKEKAMLKNYDYKVEDLPPLPETVPEIISALVRNIL 490

Query: 490 ENDPSDRPSAELAATVCQLYLWAPKHWLYGAT--PSHNEIMQWLLTLTTKVLCTG----- 542
                 R S E+AAT+ QL+LWAP  WL   +  PS +EI+QWLL LTTKVLC G     
Sbjct: 491 TRSTYKRLSVEMAATIMQLFLWAPSSWLQKDSKIPSSSEILQWLLCLTTKVLCEGRNDSL 550

Query: 543 ----------------VSYGGHV------RRTFVEYQLISTFLKRAEFRLITNALQYIQR 580
                           +SY   +      RRT  EYQLI++FL R     I    ++IQR
Sbjct: 551 EERNSIDAQKTESPHQLSYRRSLSTRSCGRRTMPEYQLIASFLGRVSLFNIREGFKWIQR 610

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729581|ref|XP_003403078.1| PREDICTED: serine/threonine-protein kinase PINK1, mitochondrial-like [Bombus terrestris]

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 255/531 (48%), Positives = 316/531 (59%), Gaps = 69/531 (12%)

Query: 116 RVTNSMASDLRRKTLQQLLYKDNSKPFLAFVGVSLASGTGILTKEDEFEGVCWEIRHAVN 175
           RVTNS+A+DLRR+   +L++  +S PF A VGVSLASGTGILTKEDE EGVCWEIR +V+
Sbjct: 84  RVTNSLAADLRRRAASRLVFGGDSAPFFALVGVSLASGTGILTKEDELEGVCWEIRESVS 143

Query: 176 NMFDKLVQ----VETLPDVDDV-KVDDIQIGKFIAKGTNAVVYEATFR------------ 218
            +     Q     ET+ + + V  + D  IG  IAKG +AVVY A F             
Sbjct: 144 KLQWNTPQNDKNYETIENEEKVISLKDFIIGPAIAKGCSAVVYSARFNDSPSTENQINID 203

Query: 219 -------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNE--DMLMNSVE--- 266
                      ALKMMFNY   SN+ +IL++M +E +P RK LR  E  D  M  VE   
Sbjct: 204 DKTKDITSFPLALKMMFNYDTESNALSILRSMYRETVPARKYLRNEELADWEMKMVERKT 263

Query: 267 NLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDL 326
            LPPHPNVV M++ F D VP +P S  +YP ALPAR+NP G  GRNMSLF+LMK+Y+T L
Sbjct: 264 KLPPHPNVVAMYYVFADRVPVLPGSWRMYPDALPARINPQGS-GRNMSLFLLMKRYDTTL 322

Query: 327 RNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSED-NTCPQLV 385
           + YL      L+M E +LL  QLLEGVTHLN+H  AHRDLKSDNILLD SE+   CP LV
Sbjct: 323 KQYLSNH--NLNMKESILLLAQLLEGVTHLNVHGIAHRDLKSDNILLDLSEEAENCPSLV 380

Query: 386 ITDFGSSYTNKS-GLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGT 444
           ITDFG    +K  GL + Y++ DI+ GGN ALMAPEV  A PG F+ +NY+K+D WT GT
Sbjct: 381 ITDFGCCLADKRHGLYLPYNTHDIDKGGNAALMAPEVITAEPGPFTSINYTKADLWTVGT 440

Query: 445 VAYEIFGHDNPFYQ-----SARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSA 499
           +AYEIFG  NPF+      S +N +Y+   L  L  ++P ++  L+  LL      R   
Sbjct: 441 IAYEIFGMKNPFHSDKEGTSLKNHNYKETDLQPLPNHMPTIISALIKNLLSRSLYKRLDT 500

Query: 500 ELAATVCQLYLWAPKHWLYG--ATPSHNEIMQWLLTLTTKVLCTG--------------- 542
           E AAT+ QL+LWAP  W       PS NEIMQWLL LTTKVLC G               
Sbjct: 501 ETAATIVQLHLWAPSTWFRSEWKLPSTNEIMQWLLCLTTKVLCEGRNSMLQLPEVLENEN 560

Query: 543 -------------VSYGGHVRRTFVEYQLISTFLKRAEFRLITNALQYIQR 580
                        +S     RRT  EYQLI++FL R     I  AL++IQ+
Sbjct: 561 IQEGRKQNSYNRSLSTKSCGRRTMPEYQLIASFLGRVTLGNIKTALKWIQQ 611

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350411252|ref|XP_003489286.1| PREDICTED: serine/threonine-protein kinase PINK1, mitochondrial-like [Bombus impatiens]

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 255/531 (48%), Positives = 316/531 (59%), Gaps = 69/531 (12%)

Query: 116 RVTNSMASDLRRKTLQQLLYKDNSKPFLAFVGVSLASGTGILTKEDEFEGVCWEIRHAVN 175
           RVTNS+A+DLRR+   +L++  +S PF A VGVSLASGTGILTKEDE EGVCWEIR +V+
Sbjct: 84  RVTNSLAADLRRRAASRLVFGGDSAPFFALVGVSLASGTGILTKEDELEGVCWEIRESVS 143

Query: 176 NMFDKLVQ----VETLPDVDD-VKVDDIQIGKFIAKGTNAVVYEATFR------------ 218
            +     Q     ET+ + +  V + D  IG  IAKG +AVVY A F             
Sbjct: 144 KLQWNTPQNDKNYETIENEEKVVSLKDFIIGPAIAKGCSAVVYSARFNDSPSTENQINID 203

Query: 219 -------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNE--DMLMNSVE--- 266
                      ALKMMFNY   SN+ +IL++M +E +P RK L+  E  D  M  VE   
Sbjct: 204 DKTKDITSFPLALKMMFNYDTESNALSILRSMYRETVPARKYLQNEELADWEMKMVERKT 263

Query: 267 NLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDL 326
            LPPHPNVV M++ F D VP +P S  +YP ALPAR+NP G  GRNMSLF+LMK+Y+T L
Sbjct: 264 KLPPHPNVVAMYYVFADRVPVLPGSWRMYPDALPARINPQGS-GRNMSLFLLMKRYDTTL 322

Query: 327 RNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSED-NTCPQLV 385
           + YL      L+M E +LL  QLLEGVTHLN+H  AHRDLKSDNILLD SE+   CP LV
Sbjct: 323 KQYLSNH--NLNMRESILLLAQLLEGVTHLNVHGIAHRDLKSDNILLDLSEEAENCPSLV 380

Query: 386 ITDFGSSYTNKS-GLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGT 444
           ITDFG    +K  GL + Y++ DI+ GGN ALMAPEV  A PG F+ +NY+K+D WT GT
Sbjct: 381 ITDFGCCLADKRHGLYLPYNTHDIDKGGNAALMAPEVITAEPGPFTSINYTKADLWTVGT 440

Query: 445 VAYEIFGHDNPFYQ-----SARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSA 499
           +AYEIFG  NPF+      S +N +Y+   L  L  ++P ++  L+  LL      R  A
Sbjct: 441 IAYEIFGMKNPFHSDMEGTSLKNHNYKETDLQPLPNHMPTIISALIKNLLSRSLYKRLDA 500

Query: 500 ELAATVCQLYLWAPKHWLYG--ATPSHNEIMQWLLTLTTKVLCTG--------------- 542
           E AAT+ QL+LWAP  W       PS NEIMQWLL LTTKVLC G               
Sbjct: 501 ETAATIVQLHLWAPSTWFRSEWKLPSTNEIMQWLLCLTTKVLCEGRNSMLQLPEVLENEN 560

Query: 543 -------------VSYGGHVRRTFVEYQLISTFLKRAEFRLITNALQYIQR 580
                         S     RRT  EYQLI++FL R     I  AL++IQ+
Sbjct: 561 VQEDRKKNSYNRSFSTKSCGRRTMPEYQLIASFLGRVTLGNIRTALKWIQQ 611

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66545638|ref|XP_623327.1| PREDICTED: serine/threonine-protein kinase PINK1, mitochondrial-like [Apis mellifera]

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 248/535 (46%), Positives = 316/535 (59%), Gaps = 76/535 (14%)

Query: 116 RVTNSMASDLRRKTLQQLLYKDNSKPFLAFVGVSLASGTGILTKEDEFEGVCWEIRHAVN 175
           RVTNS+A+DLRR+   +L++  +S PF A VG+SLASGTGILTK+DE EGVCWEIR AV+
Sbjct: 84  RVTNSLAADLRRRAASRLVFGGDSAPFFALVGISLASGTGILTKDDELEGVCWEIREAVS 143

Query: 176 NMFDKLVQ----VETLPDVDDVKVDDIQIGKFIAKGTNAVVYEATFRGV----------- 220
            +     Q     E + + + + + D  IG  IAKG +AVVY A F  +           
Sbjct: 144 KLQWNAPQNDKNYEIIKNEEKITLKDFIIGPIIAKGCSAVVYSARFNDIPNGENQNQIKI 203

Query: 221 ----------EYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDM------LMNS 264
                       ALKMMFNY A SN+ +IL++M +E +P RK L  NE++      +M  
Sbjct: 204 DDKTEDLTVFPLALKMMFNYDAESNALSILRSMYRETIPARKHLN-NEELSEWEIKMMEK 262

Query: 265 VENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNT 324
              L PHPN+V M++ F D VP +PDS  +YP ALPA +NP G  GRNMSLF+LMK+Y+ 
Sbjct: 263 KIKLTPHPNIVAMYYVFADKVPVLPDSWKMYPDALPACINPHGS-GRNMSLFLLMKRYDI 321

Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSED-NTCPQ 383
            L+ YL +   +LS  E +LL  QLLEGVTHLN H  AHRDLKSDNILLD SE+ + CP 
Sbjct: 322 TLKQYLNDH--RLSTRESILLLAQLLEGVTHLNAHGIAHRDLKSDNILLDLSEETDNCPS 379

Query: 384 LVITDFGSSYTNKS-GLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTA 442
           LVITDFG    +K  GL + Y++ DI+ GGNVALMAPE+  A PG F+ +NYSK+D WT 
Sbjct: 380 LVITDFGCCLADKRHGLYLPYNTHDIDKGGNVALMAPEIITAEPGPFTSINYSKADLWTI 439

Query: 443 GTVAYEIFGHDNPFYQ-----SARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRP 497
           GT+AYE+FG  NPF+      S +N +Y    L  L  N+P ++  L+  LL      R 
Sbjct: 440 GTIAYELFGMKNPFHNDKEGTSLKNYNYNEKDLLPLPNNIPTIISALIKNLLSRSLHKRL 499

Query: 498 SAELAATVCQLYLWAPKHWLYG--ATPSHNEIMQWLLTLTTKVLCTG------------- 542
             E AAT+ QL+LWAP  W       PS NE+MQWLL LTTKVLC G             
Sbjct: 500 DTETAATIVQLHLWAPSIWFKSEWKLPSTNEVMQWLLCLTTKVLCEGRNSMIQLSETVQD 559

Query: 543 -----------------VSYGGHVRRTFVEYQLISTFLKRAEFRLITNALQYIQR 580
                              Y G  RRT  EYQLI++FL R     I  AL++IQ+
Sbjct: 560 KNGQKIEKKNSYNRLLSTRYCG--RRTMPEYQLIASFLGRVTLSNIRTALKWIQQ 612

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307190440|gb|EFN74476.1| Serine/threonine-protein kinase PINK1, mitochondrial [Camponotus floridanus]

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 245/531 (46%), Positives = 320/531 (60%), Gaps = 70/531 (13%)

Query: 116 RVTNSMASDLRRKTLQQLLYKDNSKPFLAFVGVSLASGTGILTKEDEFEGVCWEIRHAVN 175
           RVTNS+A+DLRR+   +L++ D S PF A VGVSLASGTGILTK+DE EGVCWEIR AV+
Sbjct: 84  RVTNSLAADLRRRAASRLVFGD-SAPFFALVGVSLASGTGILTKDDELEGVCWEIREAVS 142

Query: 176 NMFDKLVQ----VETLPDVDDVKVDDIQIGKFIAKGTNAVVYEATF-------------- 217
            +     Q     ET+P  ++V + D  IG  IAKG +A VY A F              
Sbjct: 143 KLRWNAPQNDKNYETMPINENVSLRDFAIGPIIAKGCSAAVYAARFVDATQDENNDLANV 202

Query: 218 --------RGVEYALKMMFNYSAASNSHAILKAMSKELLPLRK-----PLRLNEDMLMNS 264
                        A+KMMFNY A SN+ AIL+AM +E++P R+      L + E  L  +
Sbjct: 203 DGKTKEEVTAFPLAIKMMFNYDAESNASAILRAMYREMVPARRHYGNDELAIWEQRLAEN 262

Query: 265 VENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNT 324
              LP H N+V M++ F D +P +PDS  +YP ALP R+NP+G  GRNMSLF++MK+Y+ 
Sbjct: 263 TVMLPSHSNIVAMYYVFADRIPILPDSWGMYPDALPTRINPSGS-GRNMSLFLVMKRYDI 321

Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSED-NTCPQ 383
            L+ YL  +   ++M   +LL  QLLE V H+N +  AHRDLKSDNILLD SE+ + CP 
Sbjct: 322 TLKQYLVNQ--NVNMRVSILLLAQLLEAVAHMNANGVAHRDLKSDNILLDLSEESDNCPS 379

Query: 384 LVITDFGSSYTNKS-GLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTA 442
           LV+TDFG    +K+ GL + +++ DI  GGNVALMAPEV  A PG F+ +NY+K+D WTA
Sbjct: 380 LVVTDFGCCLADKNHGLYLPFNTHDINKGGNVALMAPEVITAEPGPFTSINYTKADLWTA 439

Query: 443 GTVAYEIFGHDNPFY------QSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDR 496
           GT+AYEIFG  NPFY       + +N +Y  +ALP L  N+P ++  ++   L      R
Sbjct: 440 GTIAYEIFGMKNPFYGEKGEKAALKNYNYTEDALPALPDNLPSIINAVIKNSLVKSVYKR 499

Query: 497 PSAELAATVCQLYLWAPKHWLY--GATPSHNEIMQWLLTLTTKVLCTGV------SYGGH 548
              ELAAT+ QLYLWAP  W+   G  PS NEIMQWLL LTTKVLC G       S+G  
Sbjct: 500 LDTELAATILQLYLWAPSSWIKKEGYLPSSNEIMQWLLCLTTKVLCEGRNANLTPSHGSF 559

Query: 549 V-------------------RRTFVEYQLISTFLKRAEFRLITNALQYIQR 580
                               RRT  EYQLI++FL R     + +AL+++QR
Sbjct: 560 FVDIDRHQAYKRMLSTRSFGRRTMPEYQLIASFLSRVTLANVRSALKWMQR 610

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332030037|gb|EGI69862.1| Serine/threonine-protein kinase PINK1, mitochondrial [Acromyrmex echinatior]

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 269/660 (40%), Positives = 357/660 (54%), Gaps = 128/660 (19%)

Query: 1   MSLRTLLFRFYHNGKLLVRYIKPLQPGHKIEFLTQPPATSSG------QGRLSAPAGHPI 54
           MS+RT++ R   NG++ +R ++  +  H   +  +      G      Q  L    G+  
Sbjct: 1   MSMRTVVHRLIQNGRIALRSLRNNERFHSRRYTDKHLGKIHGAQIDKSQNSLCQTGGNVW 60

Query: 55  QTYFQ------NARKLFVNSLLNRVTNSMASDLRRKTIQQLLYKDNSKPFLAFVGVSLAS 108
            T         +AR++FV+++L R                                    
Sbjct: 61  NTRRHLGYLGTHARRIFVDNILKR------------------------------------ 84

Query: 109 GTGILTNRVTNSMASDLRRKTLQQLLYKDNSKPFLAFVGVSLASGTGILTKEDEFEGVCW 168
                   VTNS+A+DLRR+T  +L++ D S PF A VG+SLASGTGILTK+DE EGVCW
Sbjct: 85  --------VTNSLAADLRRRTASRLVFGD-SAPFFALVGISLASGTGILTKDDELEGVCW 135

Query: 169 EIRHAVN----NMFDKLVQV-ETLPDVDDVKVDDIQIGKFIAKGTNAVVYEATFRGV--- 220
           EIR AV+    N   K  Q+  T+ D + V + +  +G  IAKG +A VY A +      
Sbjct: 136 EIREAVSKLQWNYMPKDYQIIHTVTDENTVTLQNFVMGPIIAKGCSAAVYAARYVNTWDE 195

Query: 221 --------------EY--ALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLN-----ED 259
                         E+  A+KMMFNY A SN+ AIL AM +E +P RK  R N     E 
Sbjct: 196 DDSMDIEVKTKDANEFPLAIKMMFNYDAESNAAAILNAMYRETVPARKHYRNNNLTTWEQ 255

Query: 260 MLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILM 319
            L  +   LP HPN+V M+  FTD +P +P S  +YP ALP+R+NP G  GRNMSLF++M
Sbjct: 256 KLTENKVILPSHPNIVAMYCVFTDMIPVLPGSWRMYPDALPSRINPQGS-GRNMSLFLVM 314

Query: 320 KKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSED- 378
           K+Y+T L+ Y+  R   + M   +LL  QLLE V H+N +  AHRDLKSDNILLD SE+ 
Sbjct: 315 KRYDTTLKQYITSR--NVDMRVSILLLAQLLEAVAHMNANGVAHRDLKSDNILLDLSEET 372

Query: 379 NTCPQLVITDFGSSYTNKS-GLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS 437
           +  P LV+TDFG    +K+ GL + Y+S DI+ GGN+ALMAPEV  A PG F+ +NY+K+
Sbjct: 373 DNSPSLVVTDFGCCLADKTHGLYLPYNSHDIDKGGNIALMAPEVITAEPGPFTSINYTKA 432

Query: 438 DAWTAGTVAYEIFGHDNPFYQSA------RNTDYEVNALPQLNTNVPEVMRRLVAKLLEN 491
           D WT GT+AYEIFG  NPF+          N +Y  N LP L  ++P ++  ++   L  
Sbjct: 433 DLWTVGTIAYEIFGMQNPFHGKKDEKAVLNNYNYTENELPALPDSLPSIINIVIKNALSR 492

Query: 492 DPSDRPSAELAATVCQLYLWAPKHWLY---GATPSHNEIMQWLLTLTTKVLCTG------ 542
           +   R  +ELAATV QLYLWAP  WL    G  PS NEI+QWLL LTTKVLC G      
Sbjct: 493 NVYKRLDSELAATVMQLYLWAPSLWLKKSEGRLPSSNEIIQWLLCLTTKVLCEGRKENLL 552

Query: 543 VSYGGHV----------------------RRTFVEYQLISTFLKRAEFRLITNALQYIQR 580
            SY  HV                      RRT  EYQLI++FL R     + NAL++IQR
Sbjct: 553 QSYESHVDTKHDINRHNAYKPTHSEHFYGRRTMPEYQLIASFLSRVTLTNVKNALKWIQR 612

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380018787|ref|XP_003693303.1| PREDICTED: serine/threonine-protein kinase PINK1, mitochondrial-like [Apis florea]

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 247/535 (46%), Positives = 316/535 (59%), Gaps = 76/535 (14%)

Query: 116 RVTNSMASDLRRKTLQQLLYKDNSKPFLAFVGVSLASGTGILTKEDEFEGVCWEIRHAVN 175
           RVTNS+A+DLRR+   +L++  +S PF A VG+SLASGTGILTK+DE EGVCWEIR A++
Sbjct: 84  RVTNSLAADLRRRAASRLVFGGDSAPFFALVGISLASGTGILTKDDELEGVCWEIREAIS 143

Query: 176 NMFDKLVQ----VETLPDVDDVKVDDIQIGKFIAKGTNAVVYEATFRGV----------- 220
            +     Q     E + + + + + +  IG  IAKG +AVVY A F  V           
Sbjct: 144 KLQWNAPQNDKNYEMIKNEEKITLKNFIIGPIIAKGCSAVVYSARFNDVPNSENQNQIKI 203

Query: 221 ----------EYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNE------DMLMNS 264
                       ALKMMFNY A SN+ +IL++M +E LP RK L   E       M+   
Sbjct: 204 DDKTEDLTVFPLALKMMFNYDAESNASSILRSMYRETLPARKHLNDEELSEWEIKMIEKK 263

Query: 265 VENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNT 324
           ++ L PHPN+V M++ F D VP +PDS  +YP ALPAR+NP G  GRNMSLF+LMK+Y+ 
Sbjct: 264 IK-LIPHPNIVAMYYVFADKVPVLPDSWKMYPDALPARINPHGS-GRNMSLFLLMKRYDI 321

Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSED-NTCPQ 383
            L+ YL +   +LS  E +LL  QLLEGVTHLN H  AHRDLKSDNILLD SE+ + CP 
Sbjct: 322 TLKQYLNDH--RLSTRESILLLAQLLEGVTHLNAHGIAHRDLKSDNILLDLSEETDNCPS 379

Query: 384 LVITDFGSSYTNKS-GLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTA 442
           LVITDFG    +K  GL + Y++ DI+ GGNVALMAPE+  A PG F+ +NYSK+D WT 
Sbjct: 380 LVITDFGCCLADKRHGLYLPYNTHDIDKGGNVALMAPEIITAEPGPFTSINYSKADLWTI 439

Query: 443 GTVAYEIFGHDNPFYQ-----SARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRP 497
           GT+AYE+FG  NPF+      S +N +Y    L  L  +VP ++  L+  LL      R 
Sbjct: 440 GTIAYELFGMKNPFHNDKEGTSLKNYNYNEKDLLPLPNHVPTIISALIKNLLSKSLYKRL 499

Query: 498 SAELAATVCQLYLWAPKHWLYG--ATPSHNEIMQWLLTLTTKVLCTG------------- 542
             E AAT+ QL+LWAP  W       PS NE++QWLL LTTKVLC G             
Sbjct: 500 DTETAATIVQLHLWAPSIWFKSEWKLPSTNEVIQWLLCLTTKVLCEGHNSTIQLSEIMQA 559

Query: 543 -----------------VSYGGHVRRTFVEYQLISTFLKRAEFRLITNALQYIQR 580
                              Y G  RRT  EYQLI++FL R     I  AL++IQ+
Sbjct: 560 ENVQKIEKKNSYNRLLSTRYCG--RRTMPEYQLIASFLGRVTLNNIRTALKWIQQ 612

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383859216|ref|XP_003705092.1| PREDICTED: serine/threonine-protein kinase PINK1, mitochondrial-like [Megachile rotundata]

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 250/532 (46%), Positives = 316/532 (59%), Gaps = 71/532 (13%)

Query: 116 RVTNSMASDLRRKTLQQLLYKDNSKPFLAFVGVSLASGTGILTKEDEFEGVCWEIRHAVN 175
           RVTNS+A+DLRR+   +L + D S PF A VGVSLASGTGILTK+DE EGVCWEIR A++
Sbjct: 84  RVTNSLAADLRRRAASRLAFGD-SAPFFALVGVSLASGTGILTKDDELEGVCWEIREAIS 142

Query: 176 NMFDKLVQ----VETLPDVDDV-KVDDIQIGKFIAKGTNAVVYEATFRGVE--------- 221
            +     Q     E + D + +  + D  IG  IAKG +AVVY    +  E         
Sbjct: 143 KLQWNTPQNDKNYEAIKDEEKIISLKDFVIGPAIAKGCSAVVYATKLKNSERNENKDEIH 202

Query: 222 ------------YALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNE----DMLMNSV 265
                        ALKMMFNY   SN+ +IL++M +E +P RK L+  E    ++ M   
Sbjct: 203 VDDRTKDITVFPLALKMMFNYDTESNALSILRSMYRETVPARKHLKNKELAEWELKMTER 262

Query: 266 EN-LPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNT 324
           ++ LP HPN+V M+  FTD VP++P S  +YP ALPAR+NP G  GRNMSLF+LMK+Y+ 
Sbjct: 263 KSKLPSHPNIVAMYCVFTDRVPALPGSWGMYPDALPARINPEGS-GRNMSLFLLMKRYDI 321

Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSED-NTCPQ 383
            L+ YL +R   +S  E +LL  QLLEGV HLN H  AHRDLKSDNILLD SE+ + CP 
Sbjct: 322 TLKQYLADR--TISTRESILLLAQLLEGVAHLNAHGIAHRDLKSDNILLDLSEETDNCPS 379

Query: 384 LVITDFGSSYTNKS-GLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTA 442
           LVITDFG    +KS GL + Y++ D++ GGN ALMAPEV  A PG F+ +NY+K+D WT 
Sbjct: 380 LVITDFGCCLADKSYGLYLPYNTHDVDKGGNAALMAPEVITAEPGPFTSINYTKADLWTV 439

Query: 443 GTVAYEIFGHDNPFY-------QSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSD 495
           GT+AYEIFG  NPF+        S +N  Y+   LP L  +VP V+  L+  LL  +   
Sbjct: 440 GTIAYEIFGLKNPFHGADSKEETSLKNHSYKEKDLPPLPNHVPTVISALIKNLLSRNLYK 499

Query: 496 RPSAELAATVCQLYLWAPKHWLYGAT--PSHNEIMQWLLTLTTKVLCT------------ 541
           R   E AATV QL+LWAP  W  G    PS NE+MQWLL LTTKVLC             
Sbjct: 500 RLDTETAATVMQLHLWAPSIWFRGEGKLPSSNEVMQWLLCLTTKVLCEERNMMLPEVLCN 559

Query: 542 -------------GVSYGGHVRRTFVEYQLISTFLKRAEFRLITNALQYIQR 580
                         +S     RRT  EYQLI+ FL R     I NAL++IQ+
Sbjct: 560 ENIEQIDHNCYQRSLSTRSCGRRTMPEYQLIANFLGRVTLGNIRNALKWIQQ 611

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91083675|ref|XP_968367.1| PREDICTED: similar to serine/threonine protein kinase [Tribolium castaneum] gi|270006820|gb|EFA03268.1| hypothetical protein TcasGA2_TC013202 [Tribolium castaneum]

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 241/494 (48%), Positives = 321/494 (64%), Gaps = 32/494 (6%)

Query: 115 NRVTNSMASDLRRKTLQQLLYKDNSKPFLAFVGVSLASGTGILTKEDEFEGVCWEIRHAV 174
           NRVTNS++++LR+K  +++L+ D S PF A VGVS+ASGTGILTKE+E EGVCWEIR A+
Sbjct: 79  NRVTNSLSAELRKKATRRILFGD-SAPFFALVGVSIASGTGILTKEEELEGVCWEIREAI 137

Query: 175 NNMFDKLVQV-ETLPDVDDVKVDDIQIGKFIAKGTNAVVYEATFRGVE-------YALKM 226
           + +  +   + E+  + + + ++D+ +GK IAKGTN VVY A  +  E       +ALKM
Sbjct: 138 SKIKWQYYDIDESRFESNPITLNDLSLGKPIAKGTNGVVYSAKVKDDETDDNKYPFALKM 197

Query: 227 MFNYSAASNSHAILKAMSKELLPLR-----KPLRLNEDMLMNSVENLPPHPNVVVMHFAF 281
           MFNY   SNS  ILKAM +E +P R       L   E  L N  ++LPPHPN+V +   F
Sbjct: 198 MFNYDIQSNSMEILKAMYRETVPARMYYSNHDLNNWEIELANRRKHLPPHPNIVAIFSVF 257

Query: 282 TDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHE 341
           TD +  +  S  +YP+ALP RL+P G  GRNMSLF+LMK+Y+ +L+++L       S   
Sbjct: 258 TDLIQELEGSKDLYPAALPPRLHPEG-EGRNMSLFLLMKRYDCNLQSFL---STAPSTRT 313

Query: 342 RVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKS-GLS 400
            +LL  QLLEGV H+  H  AHRDLKSDN+LLD SE  + P LVI+DFG    +K+ GLS
Sbjct: 314 SLLLLAQLLEGVAHMTAHGIAHRDLKSDNLLLDTSEPES-PILVISDFGCCLADKTNGLS 372

Query: 401 MQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSA 460
           + Y+S +++ GGN ALMAPE+    PG FS +NYSK+D W  G +AYEIF   NPFY  +
Sbjct: 373 LPYTSYEMDKGGNTALMAPEIICQKPGTFSVLNYSKADLWAVGAIAYEIFNCHNPFYGPS 432

Query: 461 R--NTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLY 518
           R  N +Y+   LP+L   VP V++ LVA LL+ +P+ R   E+AA VCQL+LWAP  WL 
Sbjct: 433 RLKNFNYKEGDLPKLPDEVPTVIQALVANLLKRNPNKRLDPEVAANVCQLFLWAPSTWLK 492

Query: 519 GA--TPSHNEIMQWLLTLTTKVLCTG----VSYGGHV----RRTFVEYQLISTFLKRAEF 568
                P+  EI+QWLL+LTTKVLC G     S+G       RRT+ EY LIS+FL RA+ 
Sbjct: 493 PGLKVPTSGEILQWLLSLTTKVLCEGKINNKSFGEKFTRNWRRTYPEYLLISSFLCRAKL 552

Query: 569 RLITNALQYIQRVL 582
             + NAL +IQ  L
Sbjct: 553 ANVRNALHWIQENL 566

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	588
FB|FBgn0029891	721	Pink1 "PTEN-induced putative k	0.537	0.438	0.454	1.8e-93
ZFIN|ZDB-GENE-041212-53	574	pink1 "PTEN induced putative k	0.586	0.601	0.402	2e-63
UNIPROTKB|A5PJP5	588	PINK1 "Uncharacterized protein	0.581	0.581	0.390	2.6e-61
UNIPROTKB|F1SU10	599	PINK1 "Uncharacterized protein	0.583	0.572	0.387	5.3e-61
UNIPROTKB|Q9BXM7	581	PINK1 "Serine/threonine-protei	0.527	0.533	0.415	3.8e-58
RGD|1305769	550	Pink1 "PTEN induced putative k	0.581	0.621	0.379	1.6e-57
UNIPROTKB|E2RCD1	405	PINK1 "Uncharacterized protein	0.581	0.844	0.387	7.8e-55
MGI|MGI:1916193	580	Pink1 "PTEN induced putative k	0.683	0.693	0.356	4.3e-54
UNIPROTKB|F1NAN0	498	F1NAN0 "Uncharacterized protei	0.511	0.604	0.393	1.3e-53
WB|WBGene00017137	641	pink-1 [Caenorhabditis elegans	0.482	0.443	0.345	5.3e-41

FB|FBgn0029891 Pink1 "PTEN-induced putative kinase 1" [Drosophila melanogaster (taxid:7227)]

 Score = 728 (261.3 bits), Expect = 1.8e-93, Sum P(2) = 1.8e-93
 Identities = 155/341 (45%), Positives = 209/341 (61%)

Query:   223 ALKMMFNYSAASNSHAILKAM-SXXXXXXXXXXXXXXD----MLMNSVENLPPHPNVVVM 277
             ALKMMFNY   SN+ +IL+AM                D    +L N   +LP HPN+V M
Sbjct:   335 ALKMMFNYDIQSNALSILRAMYKETVPARQRGMNEAADEWERLLQNQTVHLPRHPNIVCM 394

Query:   278 HFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQL 337
                F D V + PD  L+YP A P R+NP G YGRNMSL++LMK+Y+  LR  L  +   L
Sbjct:   395 FGFFCDEVRNFPDGHLLYPVAQPQRINPQG-YGRNMSLYLLMKRYDHSLRGLLDSQ--DL 451

Query:   338 SMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNK- 396
             S   R+LL  Q+LE V HL+ H  AHRDLKSDN+L++  +D+  P LV++DFG    +K 
Sbjct:   452 STRNRILLLAQMLEAVNHLSRHGVAHRDLKSDNVLIEL-QDDAAPVLVLSDFGCCLADKV 510

Query:   397 SGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPF 456
              GL + Y S D++ GGN ALMAPE+    PG F+ +NY K+D W  G +AYEIFG+ NPF
Sbjct:   511 HGLRLPYVSHDVDKGGNAALMAPEIFNTMPGPFAVLNYGKADLWACGALAYEIFGNRNPF 570

Query:   457 YQSA--------------RNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA 502
             Y S+              RN+DY  + LP ++   P ++++LV  +L  +PS R S ++A
Sbjct:   571 YSSSGGMARERGEMTLSLRNSDYRQDQLPPMSDACPPLLQQLVYNILNPNPSKRVSPDIA 630

Query:   503 ATVCQLYLWAPKHWLY-GATPSHNEIMQWLLTLTTKVLCTG 542
             A V QL+LWAP +WL  G  P+  EI+QWLL+LTTK++C G
Sbjct:   631 ANVVQLFLWAPSNWLKAGGMPNSPEILQWLLSLTTKIMCEG 671

GO:0004672 "protein kinase activity" evidence=NAS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IDA

GO:0007005 "mitochondrion organization" evidence=IGI;IMP;IDA

GO:0043069 "negative regulation of programmed cell death" evidence=IMP

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0048749 "compound eye development" evidence=IMP

GO:0016006 "Nebenkern" evidence=IDA

GO:0030382 "sperm mitochondrion organization" evidence=IMP

GO:0000266 "mitochondrial fission" evidence=IGI

GO:0010821 "regulation of mitochondrion organization" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

ZFIN|ZDB-GENE-041212-53 pink1 "PTEN induced putative kinase 1" [Danio rerio (taxid:7955)]

 Score = 592 (213.5 bits), Expect = 2.0e-63, Sum P(2) = 2.0e-63
 Identities = 147/365 (40%), Positives = 199/365 (54%)

Query:   223 ALKMMFNYSAASNSHAILKAMSXXXXXX--XXXXXXXXDMLMNS-----VENLPPHPNVV 275
             A+KMM+N  A S+S AIL++MS                ++ +N       + L  HPNV+
Sbjct:   204 AMKMMWNIGAGSSSDAILRSMSMELVPSCPQALRKEQGELTLNGHFGAVPKRLSAHPNVI 263

Query:   276 VMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCA 335
              ++ AFT  VP +P +   YP  LP RLNP G  G N +LF++MK Y   LR YL E C 
Sbjct:   264 TVYRAFTAEVPLLPGAREEYPDVLPTRLNPHG-LGSNRTLFLVMKNYPCTLRQYL-EVCV 321

Query:   336 QLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNT-CPQLVITDFGSSYT 394
                  +  L+F QLLEGV HL     AHRDLKSDNILL+   DNT CP+LVITDFG    
Sbjct:   322 P-KRTQASLMFLQLLEGVDHLCRQNIAHRDLKSDNILLEF--DNTGCPRLVITDFGCCLA 378

Query:   395 NKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDN 454
               SGL + +SS  +  GGN  LMAPEV+ A PG    ++YSK+D W  G +AYE+FG  N
Sbjct:   379 EDSGLKLPFSSWWVNRGGNSCLMAPEVSTAVPGPGVVIDYSKADVWAVGAIAYELFGQPN 438

Query:   455 PFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPK 514
             PFY +  +  Y+   LP L    P+ ++ +V  LL  +P  RPSA +AA +  + LW  +
Sbjct:   439 PFY-TLESRSYQEKQLPALPAAAPDDVQLVVKLLLRKNPHKRPSARVAANILHISLWG-R 496

Query:   515 HWLYGATPSHN-EIMQWLLTLTTKVLCTGVSYGGHVRRTFVEYQLISTFLKRAEFRLITN 573
               L G       E+M WL   +  VL  G    G  + + VE +L  +FL   E   +  
Sbjct:   497 RVLMGLDKVQMAEMMAWLQCQSAVVLLKG---RGRDQSS-VEAELQRSFLANIELEDLRT 552

Query:   574 ALQYI 578
             A+ ++
Sbjct:   553 AVSFM 557

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0051402 "neuron apoptotic process" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0060872 "semicircular canal development" evidence=IMP

GO:0071542 "dopaminergic neuron differentiation" evidence=IMP

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

UNIPROTKB|A5PJP5 PINK1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 556 (200.8 bits), Expect = 2.6e-61, Sum P(3) = 2.6e-61
 Identities = 142/364 (39%), Positives = 192/364 (52%)

Query:   223 ALKMMFNYSAASNSHAILKAMS-----XXXXXXXXXXXXXXDML-MNSVENLPPHPNVVV 276
             A+KMM+N SA S+S AI   MS                   D       + L PHPN++ 
Sbjct:   220 AIKMMWNISAGSSSEAIFSTMSQELVPASRVALAGEYGAVTDRRPKGGPKQLAPHPNIIR 279

Query:   277 MHFAFTDFVPSIPDSSLIYPSALPARLNPTG-GYGRNMSLFILMKKYNTDLRNYLRERCA 335
             +  AFT  VP +P + + YP  LP RL+P G G+GR  +LF++MK Y   LR YLR    
Sbjct:   280 VLRAFTSSVPLLPGALVDYPDVLPPRLHPAGLGHGR--TLFLVMKNYPCTLRQYLRGNTP 337

Query:   336 QLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTN 395
               S     ++  QLLEGV HL     AHRDLKSDNIL++   D  CP LVITDFG    +
Sbjct:   338 --SPRLATVMTLQLLEGVDHLVQQGVAHRDLKSDNILVELDADG-CPWLVITDFGCCLAD 394

Query:   396 KS-GLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDN 454
             +  GL + ++S  ++ GGN  LMAPEV+ A PG  + ++YSK+DAW  G +AYEIFG  N
Sbjct:   395 ERVGLQLPFTSWYVDRGGNGCLMAPEVSTACPGPRAVIDYSKADAWAVGALAYEIFGLPN 454

Query:   455 PFYQSAR----NTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYL 510
             PFY   R    +  Y+   LP L   VP  +R LV  LL+ +   RPSA +AA V  L L
Sbjct:   455 PFYGQGRAHLESRSYQEAQLPALPEWVPRDVRCLVRLLLQREVCKRPSARVAANVLHLSL 514

Query:   511 WAPKHWLYGATPSHNEIMQWLLTLTTKVLCTGVSYGGHVRRTFVEYQLISTFLKRAEFRL 570
             W  +H L       ++++ WLL  +   L           +  VE ++   FL   E+  
Sbjct:   515 WG-EHTLAPKNLKLDKMIAWLLQQSAATLLANRL----TEKNCVETKMKMLFLANLEYEA 569

Query:   571 ITNA 574
             ++ A
Sbjct:   570 LSQA 573

GO:0097237 "cellular response to toxic substance" evidence=IEA

GO:0090200 "positive regulation of release of cytochrome c from mitochondria" evidence=IEA

GO:0055131 "C3HC4-type RING finger domain binding" evidence=IEA

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA

GO:0043254 "regulation of protein complex assembly" evidence=IEA

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEA

GO:0033603 "positive regulation of dopamine secretion" evidence=IEA

GO:0032226 "positive regulation of synaptic transmission, dopaminergic" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0031396 "regulation of protein ubiquitination" evidence=IEA

GO:0018105 "peptidyl-serine phosphorylation" evidence=IEA

GO:0010857 "calcium-dependent protein kinase activity" evidence=IEA

GO:0007243 "intracellular protein kinase cascade" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0000422 "mitochondrion degradation" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

UNIPROTKB|F1SU10 PINK1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 559 (201.8 bits), Expect = 5.3e-61, Sum P(3) = 5.3e-61
 Identities = 141/364 (38%), Positives = 195/364 (53%)

Query:   223 ALKMMFNYSAASNSHAILKAMSXXXXXXXXXXXXXXDMLM------NSVENLPPHPNVVV 276
             A+KMM+N SA S+S AIL  MS                 +      +  + L PHPN++ 
Sbjct:   230 AIKMMWNISAGSSSEAILSTMSQELVPASRVALAGEYGAVPHRKSRSGPKQLAPHPNIIR 289

Query:   277 MHFAFTDFVPSIPDSSLIYPSALPARLNPTG-GYGRNMSLFILMKKYNTDLRNYLRERCA 335
             +  AFT  VP +P + + YP  LP RL+P G G+GR  +LF++MK Y   LR YLR    
Sbjct:   290 VFRAFTSSVPLLPGALVDYPDVLPPRLHPEGLGHGR--TLFLVMKNYPCTLRQYLRGNTP 347

Query:   336 QLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTN 395
               S     ++  QLLEGV HL     AHRDLKSDNIL++    + CP LVI DFG    +
Sbjct:   348 --SPRLATVMTLQLLEGVDHLVQQGIAHRDLKSDNILVELDAADGCPWLVIADFGCCLAD 405

Query:   396 KS-GLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDN 454
             +  GL + ++S  ++ GGN  LMAPEV+ A PG  + ++YSK+DAW  G +AYEIFG  N
Sbjct:   406 ERVGLQLPFTSWYVDRGGNGCLMAPEVSTACPGPRAVIDYSKADAWAVGALAYEIFGLSN 465

Query:   455 PFYQSAR----NTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYL 510
             PFY   R    +  Y+   LP L  +VP  +R+LV  LL+ D S RPSA +AA V  L L
Sbjct:   466 PFYGQGRAHLESRSYQEAQLPALPESVPLDVRQLVRSLLQRDASKRPSARVAANVLHLSL 525

Query:   511 WAPKHWLYGATPSHNEIMQWLLTLTTKVLCTGVSYGGHVRRTFVEYQLISTFLKRAEFRL 570
             W  +  L       ++++ WLL  +   L           +  VE ++   FL   E+  
Sbjct:   526 WG-EDTLALKNLKLDKMVGWLLQQSAATLLANRL----TEKNCVETKMKMLFLANLEYEA 580

Query:   571 ITNA 574
             ++ A
Sbjct:   581 LSQA 584

GO:0097237 "cellular response to toxic substance" evidence=IEA

GO:0090200 "positive regulation of release of cytochrome c from mitochondria" evidence=IEA

GO:0055131 "C3HC4-type RING finger domain binding" evidence=IEA

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA

GO:0043254 "regulation of protein complex assembly" evidence=IEA

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEA

GO:0033603 "positive regulation of dopamine secretion" evidence=IEA

GO:0032226 "positive regulation of synaptic transmission, dopaminergic" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0031396 "regulation of protein ubiquitination" evidence=IEA

GO:0018105 "peptidyl-serine phosphorylation" evidence=IEA

GO:0010857 "calcium-dependent protein kinase activity" evidence=IEA

GO:0007243 "intracellular protein kinase cascade" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0000422 "mitochondrion degradation" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

UNIPROTKB|Q9BXM7 PINK1 "Serine/threonine-protein kinase PINK1, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 562 (202.9 bits), Expect = 3.8e-58, Sum P(2) = 3.8e-58
 Identities = 137/330 (41%), Positives = 184/330 (55%)

Query:   223 ALKMMFNYSAASNSHAILKAMS------XXXXXXXXXXXXXXDMLMNSVENLPPHPNVVV 276
             A+KMM+N SA S+S AIL  MS                           + L PHPN++ 
Sbjct:   217 AIKMMWNISAGSSSEAILNTMSQELVPASRVALAGEYGAVTYRKSKRGPKQLAPHPNIIR 276

Query:   277 MHFAFTDFVPSIPDSSLIYPSALPARLNPTG-GYGRNMSLFILMKKYNTDLRNYLRERCA 335
             +  AFT  VP +P + + YP  LP+RL+P G G+GR  +LF++MK Y   LR YL   C 
Sbjct:   277 VLRAFTSSVPLLPGALVDYPDVLPSRLHPEGLGHGR--TLFLVMKNYPCTLRQYL---CV 331

Query:   336 QL-SMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYT 394
                S     ++  QLLEGV HL     AHRDLKSDNIL++   D  CP LVI DFG    
Sbjct:   332 NTPSPRLAAMMLLQLLEGVDHLVQQGIAHRDLKSDNILVELDPDG-CPWLVIADFGCCLA 390

Query:   395 NKS-GLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHD 453
             ++S GL + +SS  ++ GGN  LMAPEV+ A PG  + ++YSK+DAW  G +AYEIFG  
Sbjct:   391 DESIGLQLPFSSWYVDRGGNGCLMAPEVSTARPGPRAVIDYSKADAWAVGAIAYEIFGLV 450

Query:   454 NPFYQSAR----NTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLY 509
             NPFY   +    +  Y+   LP L  +VP  +R+LV  LL+ + S RPSA +AA V  L 
Sbjct:   451 NPFYGQGKAHLESRSYQEAQLPALPESVPPDVRQLVRALLQREASKRPSARVAANVLHLS 510

Query:   510 LWAPKHWLYGATPSHNEIMQWLLTLTTKVL 539
             LW  +H L       ++++ WLL  +   L
Sbjct:   511 LWG-EHILALKNLKLDKMVGWLLQQSAATL 539

GO:0008219 "cell death" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0032226 "positive regulation of synaptic transmission, dopaminergic" evidence=IEA

GO:0033603 "positive regulation of dopamine secretion" evidence=IEA

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA

GO:0097237 "cellular response to toxic substance" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0005524 "ATP binding" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0007243 "intracellular protein kinase cascade" evidence=IDA

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0006950 "response to stress" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0031625 "ubiquitin protein ligase binding" evidence=IPI

GO:0000422 "mitochondrion degradation" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0016301 "kinase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0055131 "C3HC4-type RING finger domain binding" evidence=IPI

GO:0090200 "positive regulation of release of cytochrome c from mitochondria" evidence=IMP

GO:0010857 "calcium-dependent protein kinase activity" evidence=IDA

GO:0018105 "peptidyl-serine phosphorylation" evidence=IDA

GO:0043254 "regulation of protein complex assembly" evidence=IDA

GO:0031396 "regulation of protein ubiquitination" evidence=IDA

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IDA

RGD|1305769 Pink1 "PTEN induced putative kinase 1" [Rattus norvegicus (taxid:10116)]

 Score = 550 (198.7 bits), Expect = 1.6e-57, Sum P(2) = 1.6e-57
 Identities = 139/366 (37%), Positives = 197/366 (53%)

Query:   222 YALKMMFNYSAASNSHAILKAMSXXXXXXXXXX------XXXXDMLMNSVENLPPHPNVV 275
             +A+KMM+N SA S+S AIL  MS                        +  + L PHPN++
Sbjct:   185 FAIKMMWNISAGSSSEAILSKMSQELVPASRMALDGEYGAVTYRRSRDGPKQLAPHPNII 244

Query:   276 VMHFAFTDFVPSIPDSSLIYPSALPARLNPTG-GYGRNMSLFILMKKYNTDLRNYLRERC 334
              +  AFT  VP +P +   YP  LP    P G G+GR  +LF++MK Y   LR YL E+ 
Sbjct:   245 RVFRAFTSSVPLLPGALADYPDMLPPHYYPEGLGHGR--TLFLVMKNYPCTLRQYLEEQT 302

Query:   335 AQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYT 394
                S     ++  QLLEGV HL     AHRDLKSDNIL++   D  CP LVI+DFG    
Sbjct:   303 P--SSRLATMMTLQLLEGVDHLVQQGIAHRDLKSDNILVEWDSDG-CPWLVISDFGCCLA 359

Query:   395 NKS-GLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHD 453
             ++  GL + ++S+ +E GGN +LMAPEV+ A  G  + ++YSK+D W  G +AYEIFG  
Sbjct:   360 DERVGLQLPFNSSSVERGGNGSLMAPEVSTAHSGPHAVIDYSKADTWAVGAIAYEIFGLA 419

Query:   454 NPFY-QSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLY 509
             NPFY Q + + +   Y+   LP++  +VP   R+LV  LL+ + + RPSA +AA V  L 
Sbjct:   420 NPFYGQGSAHLESRSYQEAQLPEMPKSVPPETRQLVRSLLQREANKRPSARIAANVLHLS 479

Query:   510 LWAPKHWLYGATPSHNEIMQWLLTLTTKVLCTGVSYGGHVR-RTFVEYQLISTFLKRAEF 568
             LW  +H L       ++++ WLL  +   L         +R ++ VE +L   FL   E 
Sbjct:   480 LWG-EHLLALKNLKLDKMIAWLLQQSAATLLAD-----RLREKSCVETKLQMLFLANLEC 533

Query:   569 RLITNA 574
               +  A
Sbjct:   534 EALCQA 539

GO:0000287 "magnesium ion binding" evidence=ISO

GO:0000422 "mitochondrion degradation" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISO

GO:0005524 "ATP binding" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005741 "mitochondrial outer membrane" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005829 "cytosol" evidence=ISO

GO:0006468 "protein phosphorylation" evidence=ISO

GO:0006950 "response to stress" evidence=ISO

GO:0007243 "intracellular protein kinase cascade" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0010857 "calcium-dependent protein kinase activity" evidence=ISO

GO:0016301 "kinase activity" evidence=ISO

GO:0018105 "peptidyl-serine phosphorylation" evidence=ISO

GO:0031396 "regulation of protein ubiquitination" evidence=ISO

GO:0031625 "ubiquitin protein ligase binding" evidence=ISO

GO:0032226 "positive regulation of synaptic transmission, dopaminergic" evidence=ISO

GO:0033603 "positive regulation of dopamine secretion" evidence=ISO

GO:0033605 "positive regulation of catecholamine secretion" evidence=ISO

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=ISO

GO:0043254 "regulation of protein complex assembly" evidence=ISO

GO:0043523 "regulation of neuron apoptotic process" evidence=ISO

GO:0043524 "negative regulation of neuron apoptotic process" evidence=ISO

GO:0055131 "C3HC4-type RING finger domain binding" evidence=ISO

GO:0090200 "positive regulation of release of cytochrome c from mitochondria" evidence=ISO

GO:0097237 "cellular response to toxic substance" evidence=ISO

UNIPROTKB|E2RCD1 PINK1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
 Identities = 141/364 (38%), Positives = 194/364 (53%)

Query:   223 ALKMMFNYSAASNSHAILKAMS------XXXXXXXXXXXXXXDMLMNSVENLPPHPNVVV 276
             A+KMM+N SA S+S AI   MS                           + L PHPN++ 
Sbjct:    41 AIKMMWNISAGSSSEAIFSTMSQELVPASRVALAGEYGAVTYRKSKGGPKQLAPHPNIIR 100

Query:   277 MHFAFTDFVPSIPDSSLIYPSALPARLNPTG-GYGRNMSLFILMKKYNTDLRNYLRERCA 335
             +  AFT  VP +P + + YP  LP RL+P G G+GR  +LF++MK Y   LR YLRE   
Sbjct:   101 VFRAFTSSVPLLPGALVDYPDVLPPRLHPEGLGHGR--TLFLVMKNYPCTLRQYLRENTP 158

Query:   336 QLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTN 395
               S     ++  QLLE V HL     AHRDLKSDNIL++   D  CP LVI DFG    +
Sbjct:   159 --SPRLATVMILQLLEAVDHLVQQGVAHRDLKSDNILVELDADG-CPWLVIADFGCCLAD 215

Query:   396 -KSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDN 454
              ++GL + ++S  ++ GGN  LMAPEV+ A PG  + ++YSK+DAW  GT+AYEIFG  N
Sbjct:   216 ERTGLQLPFTSWYVDRGGNGCLMAPEVSTACPGPRAVIDYSKADAWAVGTLAYEIFGLPN 275

Query:   455 PFYQSAR----NTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYL 510
             PFY   R    +  Y+   LP +  +VP   R+LV  LL+ + S RPSA +AA V  L L
Sbjct:   276 PFYGQGRAHLESRSYQEAQLPAMPESVPLDARQLVRSLLQREASKRPSARVAANVLHLSL 335

Query:   511 WAPKHWLYGATPSHNEIMQWLLTLTTKVLCTGVSYGGHVRRTFVEYQLISTFLKRAEFRL 570
             W  +H L       ++++ WLL  +   L           ++ VE ++   FL   E+  
Sbjct:   336 WG-EHTLALKNLKLDKMIGWLLQQSAATLLADRL----TEKSCVETKMKMLFLANLEYEA 390

Query:   571 ITNA 574
             +  A
Sbjct:   391 LCQA 394

GO:0097237 "cellular response to toxic substance" evidence=IEA

GO:0090200 "positive regulation of release of cytochrome c from mitochondria" evidence=IEA

GO:0055131 "C3HC4-type RING finger domain binding" evidence=IEA

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA

GO:0043254 "regulation of protein complex assembly" evidence=IEA

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEA

GO:0033603 "positive regulation of dopamine secretion" evidence=IEA

GO:0032226 "positive regulation of synaptic transmission, dopaminergic" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0031396 "regulation of protein ubiquitination" evidence=IEA

GO:0018105 "peptidyl-serine phosphorylation" evidence=IEA

GO:0010857 "calcium-dependent protein kinase activity" evidence=IEA

GO:0007243 "intracellular protein kinase cascade" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0000422 "mitochondrion degradation" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

MGI|MGI:1916193 Pink1 "PTEN induced putative kinase 1" [Mus musculus (taxid:10090)]

 Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
 Identities = 157/441 (35%), Positives = 220/441 (49%)

Query:   161 DEFEGVCWE--------IRHAVNNMFDKLVQVETLPXXXXXXXXXIQIGKFIAKGTNAVV 212
             D  +  CW+        I  A+    +  V   T+P           +G  I KG + V+
Sbjct:   141 DPLDTRCWQGFRLEDYLIGQAIGKGCNAAVYEATMPTLPQHLEKAKHLG-LIGKGPDVVL 199

Query:   213 YEATFR---GVE---YALKMMFNYSAASNSHAILKAMS------XXXXXXXXXXXXXXDM 260
               A      G     +A+KMM+N SA S+S AIL  MS                      
Sbjct:   200 KGADGEQAPGTPTFPFAIKMMWNISAGSSSEAILSKMSQELVPASRVALAGEYGAVTYRR 259

Query:   261 LMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTG-GYGRNMSLFILM 319
               +  + L PHPN++ +  AFT  VP +P +   YP  LP    P G G+GR  +LF++M
Sbjct:   260 SRDGPKQLAPHPNIIRVFRAFTSSVPLLPGALADYPDMLPPHYYPEGLGHGR--TLFLVM 317

Query:   320 KKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDN 379
             K Y   LR YL E+    S     ++  QLLEGV HL     AHRDLKSDNIL++   D 
Sbjct:   318 KNYPCTLRQYLEEQTP--SSRLATMMTLQLLEGVDHLVQQGIAHRDLKSDNILVEWDSDG 375

Query:   380 TCPQLVITDFGSSYTNKS-GLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSD 438
              CP LVI+DFG    ++  GL + ++S+ +E GGN +LMAPEV+ A  G  + ++YSK+D
Sbjct:   376 -CPWLVISDFGCCLADQHVGLRLPFNSSSVERGGNGSLMAPEVSTAHSGPSAVIDYSKAD 434

Query:   439 AWTAGTVAYEIFGHDNPFY-QSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPS 494
              W  G +AYEIFG  NPFY Q + + +   Y+   LP++  +VP   RRLV  LL+ + S
Sbjct:   435 TWAVGAIAYEIFGLANPFYGQGSAHLESRSYQEAQLPEMPESVPPEARRLVRSLLQREAS 494

Query:   495 DRPSAELAATVCQLYLWAPKHWLYGATPSHNEIMQWLLTLTTKVLCTGVSYGGHVR-RTF 553
              RPSA LAA V  L LW  +H L       ++++ WLL  +   L         +R ++ 
Sbjct:   495 KRPSARLAANVLHLSLWG-EHLLALKNLKLDKMIAWLLQQSAATLLAD-----RLREKSC 548

Query:   554 VEYQLISTFLKRAEFRLITNA 574
             VE +L   FL   E   +  A
Sbjct:   549 VETKLQMLFLANLECEALCQA 569

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=ISO;IDA

GO:0000422 "mitochondrion degradation" evidence=ISO

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISO;IDA

GO:0005524 "ATP binding" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005741 "mitochondrial outer membrane" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0006468 "protein phosphorylation" evidence=IEA;ISO;IDA

GO:0006914 "autophagy" evidence=IEA

GO:0006950 "response to stress" evidence=ISO

GO:0007243 "intracellular protein kinase cascade" evidence=ISO;IDA

GO:0010857 "calcium-dependent protein kinase activity" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016301 "kinase activity" evidence=ISO;IDA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0018105 "peptidyl-serine phosphorylation" evidence=ISO

GO:0031396 "regulation of protein ubiquitination" evidence=ISO

GO:0031625 "ubiquitin protein ligase binding" evidence=ISO

GO:0032226 "positive regulation of synaptic transmission, dopaminergic" evidence=IMP

GO:0033603 "positive regulation of dopamine secretion" evidence=IMP

GO:0033605 "positive regulation of catecholamine secretion" evidence=IMP

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=ISO

GO:0043254 "regulation of protein complex assembly" evidence=ISO

GO:0043523 "regulation of neuron apoptotic process" evidence=IMP

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

GO:0055131 "C3HC4-type RING finger domain binding" evidence=ISO

GO:0090200 "positive regulation of release of cytochrome c from mitochondria" evidence=ISO

GO:0097237 "cellular response to toxic substance" evidence=IMP

UNIPROTKB|F1NAN0 F1NAN0 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 528 (190.9 bits), Expect = 1.3e-53, Sum P(2) = 1.3e-53
 Identities = 124/315 (39%), Positives = 174/315 (55%)

Query:   266 ENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTD 325
             + L PHPN++ +  AFT  VP +P +   YP  LP  LNP G  GR+ +LF++MK Y   
Sbjct:   182 KRLRPHPNIIQVIRAFTSSVPLLPGALTDYPDVLPVSLNPRG-IGRSHTLFLVMKNYPCT 240

Query:   326 LRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLV 385
             L  YLR+      +   ++L  QLLEGV HL  HR AHRDLKSDNIL++      CP+LV
Sbjct:   241 LCQYLRDNSPDSRLSTMMIL--QLLEGVDHLVRHRIAHRDLKSDNILVEFDSAG-CPRLV 297

Query:   386 ITDFGSSYTNKS-GLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGT 444
             ITDFG    + S GL + ++S D++ GGN +LM PEV  A+ G    ++YSK+DAW  G 
Sbjct:   298 ITDFGCCLADDSIGLRLPFTSIDMDRGGNSSLMPPEVTTASAGPGMVIDYSKADAWAVGA 357

Query:   445 VAYEIFGHDNPFYQSA----RNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
             +AYEI G  NPFY        +  Y    LP L   VP  +++++  LL+ DP+ R SA 
Sbjct:   358 IAYEILGLPNPFYSCGDSFLESRSYREEELPSLPNGVPCEVKQVIRMLLQRDPNKRLSAR 417

Query:   501 LAATVCQLYLWAPKHWLYGATPSHNEIMQWLLTLTTKVLCTGVSYGGHVRRTFVEYQLIS 560
             +AA V  L LW  +  L       +++  WLL  +   L       G V ++ VE ++  
Sbjct:   418 VAANVLHLSLWG-ESILASEALKPDQMTAWLLCQSAATLLMD----GLVDKSRVETKMKM 472

Query:   561 TFLKRAEFRLITNAL 575
              FL   +F  +  A+
Sbjct:   473 CFLANLDFEDLWTAV 487

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0000422 "mitochondrion degradation" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

GO:0007243 "intracellular protein kinase cascade" evidence=IEA

GO:0010857 "calcium-dependent protein kinase activity" evidence=IEA

GO:0018105 "peptidyl-serine phosphorylation" evidence=IEA

GO:0031396 "regulation of protein ubiquitination" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0032226 "positive regulation of synaptic transmission, dopaminergic" evidence=IEA

GO:0033603 "positive regulation of dopamine secretion" evidence=IEA

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEA

GO:0043254 "regulation of protein complex assembly" evidence=IEA

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA

GO:0055131 "C3HC4-type RING finger domain binding" evidence=IEA

GO:0090200 "positive regulation of release of cytochrome c from mitochondria" evidence=IEA

GO:0097237 "cellular response to toxic substance" evidence=IEA

WB|WBGene00017137 pink-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 410 (149.4 bits), Expect = 5.3e-41, Sum P(3) = 5.3e-41
 Identities = 101/292 (34%), Positives = 152/292 (52%)

Query:   223 ALKMMFNYSAASNSHA-ILKAMSXXXXXXXXXXXXXXDMLMNSVENLPP-HPNVVVMHFA 280
             A+K+MFN+    +  A +LK+M                  M +   LP  HPNVV +  A
Sbjct:   197 AIKLMFNFEHDRDGDAHLLKSMGNELAPYPNAAKLLNGQ-MGTFRPLPAKHPNVVRIQTA 255

Query:   281 FTDFVPSIPDSSLIYPSAL-PARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSM 339
             F D +  +PD+   YP AL  AR   +       +++++M++Y   L  Y+  R      
Sbjct:   256 FIDSLKVLPDAIERYPDALHTARWYESIA-SEPKTMYVVMRRYRQTLHEYVWTRHRNY-W 313

Query:   340 HERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGL 399
               RV++  QLLE  T+L+ H+ A RD+KSDNILL+   D+  PQLV+ DFG +    +  
Sbjct:   314 TGRVII-AQLLEACTYLHKHKVAQRDMKSDNILLEYDFDDEIPQLVVADFGCALACDNW- 371

Query:   400 SMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQS 459
              + Y S ++ LGGN    APE+A A PG    VN+  +D W AG ++YE+    NPFY+ 
Sbjct:   372 QVDYESDEVSLGGNAKTKAPEIATAVPGKNVKVNFEMADTWAAGGLSYEVLTRSNPFYKL 431

Query:   460 ARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLW 511
                  Y+ + LP L + V  V R ++  LL+ DP++R    +AA    L L+
Sbjct:   432 LDTATYQESELPALPSRVNFVARDVIFDLLKRDPNERVKPNIAANALNLSLF 483

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0034599 "cellular response to oxidative stress" evidence=IMP

GO:0007005 "mitochondrion organization" evidence=IMP

GO:0007411 "axon guidance" evidence=IMP

GO:0048846 "axon extension involved in axon guidance" evidence=IGI;IMP

GO:0034976 "response to endoplasmic reticulum stress" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q99MQ3	PINK1_MOUSE	2, ., 7, ., 1, 1, ., 1	0.3555	0.7074	0.7172	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.11.1	0.737
3rd Layer	2.7.11	0.691

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	588
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	1e-27
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	7e-27
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	5e-25
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	5e-21
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	1e-18
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	7e-16
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	1e-15
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	5e-15
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	2e-14
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	8e-14
PHA03209	357	PHA03209, PHA03209, serine/threonine kinase US3; P	1e-13
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	2e-13
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	2e-13
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	6e-13
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	2e-12
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	8e-12
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	1e-11
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	1e-11
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	1e-11
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	2e-11
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	4e-11
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	5e-11
PTZ00283	496	PTZ00283, PTZ00283, serine/threonine protein kinas	8e-11
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	8e-11
cd08224	267	cd08224, STKc_Nek6_Nek7, Catalytic domain of the P	1e-10
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	2e-10
cd08225	257	cd08225, STKc_Nek5, Catalytic domain of the Protei	3e-10
cd08220	256	cd08220, STKc_Nek8, Catalytic domain of the Protei	3e-10
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	3e-10
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	3e-10
cd07831	282	cd07831, STKc_MOK, Catalytic domain of the Serine/	1e-09
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	2e-09
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	2e-09
cd06608	275	cd06608, STKc_myosinIII_like, Catalytic domain of	4e-09
cd08221	256	cd08221, STKc_Nek9, Catalytic domain of the Protei	4e-09
cd08222	260	cd08222, STKc_Nek11, Catalytic domain of the Prote	4e-09
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	4e-09
cd06624	268	cd06624, STKc_ASK, Catalytic domain of the Protein	5e-09
cd06620	284	cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of	6e-09
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	7e-09
PHA03211	461	PHA03211, PHA03211, serine/threonine kinase US3; P	8e-09
cd05036	277	cd05036, PTKc_ALK_LTK, Catalytic domain of the Pro	1e-08
cd05605	285	cd05605, STKc_GRK4_like, Catalytic domain of G pro	1e-08
cd05575	323	cd05575, STKc_SGK, Catalytic domain of the Protein	1e-08
PHA03207	392	PHA03207, PHA03207, serine/threonine kinase US3; P	2e-08
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	2e-08
PTZ00267	478	PTZ00267, PTZ00267, NIMA-related protein kinase; P	3e-08
cd05602	325	cd05602, STKc_SGK1, Catalytic domain of the Protei	3e-08
cd07843	293	cd07843, STKc_CDC2L1, Catalytic domain of the Seri	6e-08
cd05574	316	cd05574, STKc_phototropin_like, Catalytic domain o	6e-08
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	6e-08
cd06635	317	cd06635, STKc_TAO1, Catalytic domain of the Protei	7e-08
cd05051	296	cd05051, PTKc_DDR, Catalytic domain of the Protein	7e-08
cd05630	285	cd05630, STKc_GRK6, Catalytic domain of the Protei	8e-08
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	8e-08
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	9e-08
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	1e-07
cd06634	308	cd06634, STKc_TAO2, Catalytic domain of the Protei	1e-07
cd08219	255	cd08219, STKc_Nek3, Catalytic domain of the Protei	1e-07
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	1e-07
cd05044	269	cd05044, PTKc_c-ros, Catalytic domain of the Prote	1e-07
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	1e-07
cd05614	332	cd05614, STKc_MSK2_N, N-terminal catalytic domain	1e-07
cd06607	307	cd06607, STKc_TAO, Catalytic domain of the Protein	2e-07
cd05583	288	cd05583, STKc_MSK_N, N-terminal catalytic domain o	2e-07
cd06633	313	cd06633, STKc_TAO3, Catalytic domain of the Protei	2e-07
cd05084	252	cd05084, PTKc_Fes, Catalytic domain of the Protein	2e-07
cd05032	277	cd05032, PTKc_InsR_like, Catalytic domain of Insul	3e-07
cd05573	350	cd05573, STKc_ROCK_NDR_like, Catalytic domain of R	3e-07
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	3e-07
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	7e-07
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	7e-07
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	8e-07
cd05114	256	cd05114, PTKc_Tec_Rlk, Catalytic domain of the Pro	8e-07
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	9e-07
cd05632	285	cd05632, STKc_GRK5, Catalytic domain of the Protei	1e-06
cd08223	257	cd08223, STKc_Nek4, Catalytic domain of the Protei	1e-06
cd05577	277	cd05577, STKc_GRK, Catalytic domain of the Protein	1e-06
cd08228	267	cd08228, STKc_Nek6, Catalytic domain of the Protei	1e-06
cd06611	280	cd06611, STKc_SLK_like, Catalytic domain of Ste20-	1e-06
cd05613	290	cd05613, STKc_MSK1_N, N-terminal catalytic domain	1e-06
cd07870	291	cd07870, STKc_PFTAIRE2, Catalytic domain of the Se	1e-06
cd07854	342	cd07854, STKc_MAPK4_6, Catalytic domain of the Ser	1e-06
cd06621	287	cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of	2e-06
cd05608	280	cd05608, STKc_GRK1, Catalytic domain of the Protei	2e-06
cd07857	332	cd07857, STKc_MPK1, Catalytic domain of the Serine	2e-06
cd05056	270	cd05056, PTKc_FAK, Catalytic domain of the Protein	2e-06
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	2e-06
cd06917	277	cd06917, STKc_NAK1_like, Catalytic domain of Funga	2e-06
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	2e-06
cd07871	288	cd07871, STKc_PCTAIRE3, Catalytic domain of the Se	2e-06
cd07875	364	cd07875, STKc_JNK1, Catalytic domain of the Serine	3e-06
cd07845	309	cd07845, STKc_CDK10, Catalytic domain of the Serin	3e-06
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	4e-06
cd07844	291	cd07844, STKc_PCTAIRE_like, Catalytic domain of PC	4e-06
cd08229	267	cd08229, STKc_Nek7, Catalytic domain of the Protei	5e-06
cd08218	256	cd08218, STKc_Nek1, Catalytic domain of the Protei	5e-06
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	6e-06
cd05050	288	cd05050, PTKc_Musk, Catalytic domain of the Protei	7e-06
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	7e-06
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	7e-06
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	7e-06
cd05067	260	cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro	8e-06
cd07873	301	cd07873, STKc_PCTAIRE1, Catalytic domain of the Se	8e-06
cd06638	286	cd06638, STKc_myosinIIIA, Catalytic domain of the	9e-06
cd06639	291	cd06639, STKc_myosinIIIB, Catalytic domain of the	1e-05
PHA03212	391	PHA03212, PHA03212, serine/threonine kinase US3; P	1e-05
cd07851	343	cd07851, STKc_p38, Catalytic domain of the Serine/	1e-05
cd05046	275	cd05046, PTK_CCK4, Pseudokinase domain of the Prot	1e-05
cd05102	338	cd05102, PTKc_VEGFR3, Catalytic domain of the Prot	1e-05
cd05586	330	cd05586, STKc_Sck1_like, Catalytic domain of Suppr	1e-05
cd05631	285	cd05631, STKc_GRK4, Catalytic domain of the Protei	2e-05
cd07855	334	cd07855, STKc_ERK5, Catalytic domain of the Serine	2e-05
cd05585	312	cd05585, STKc_YPK1_like, Catalytic domain of Yeast	2e-05
cd08528	269	cd08528, STKc_Nek10, Catalytic domain of the Prote	2e-05
cd06644	292	cd06644, STKc_STK10_LOK, Catalytic domain of the P	2e-05
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	2e-05
cd05035	273	cd05035, PTKc_Axl_like, Catalytic Domain of Axl-li	2e-05
cd07874	355	cd07874, STKc_JNK3, Catalytic domain of the Serine	2e-05
cd05065	269	cd05065, PTKc_EphR_B, Catalytic domain of the Prot	2e-05
cd05597	331	cd05597, STKc_DMPK_like, Catalytic domain of Myoto	2e-05
cd05060	257	cd05060, PTKc_Syk_like, Catalytic domain of Spleen	3e-05
cd05081	284	cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2)	3e-05
cd05620	316	cd05620, STKc_nPKC_delta, Catalytic domain of the	3e-05
cd07872	309	cd07872, STKc_PCTAIRE2, Catalytic domain of the Se	3e-05
cd05054	337	cd05054, PTKc_VEGFR, Catalytic domain of the Prote	3e-05
cd06651	266	cd06651, STKc_MEKK3, Catalytic domain of the Prote	4e-05
cd05607	277	cd05607, STKc_GRK7, Catalytic domain of the Protei	4e-05
cd05611	260	cd05611, STKc_Rim15_like, Catalytic domain of fung	4e-05
cd05584	323	cd05584, STKc_p70S6K, Catalytic domain of the Prot	4e-05
cd05100	334	cd05100, PTKc_FGFR3, Catalytic domain of the Prote	4e-05
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	4e-05
cd05055	302	cd05055, PTKc_PDGFR, Catalytic domain of the Prote	5e-05
cd07839	284	cd07839, STKc_CDK5, Catalytic domain of the Serine	6e-05
cd07850	353	cd07850, STKc_JNK, Catalytic domain of the Serine/	6e-05
cd06631	265	cd06631, STKc_YSK4, Catalytic domain of the Protei	6e-05
cd06659	297	cd06659, STKc_PAK6, Catalytic domain of the Protei	7e-05
cd05075	272	cd05075, PTKc_Axl, Catalytic domain of the Protein	7e-05
cd05592	316	cd05592, STKc_nPKC_theta_delta, Catalytic domain o	8e-05
cd06641	277	cd06641, STKc_MST3, Catalytic domain of the Protei	8e-05
cd06640	277	cd06640, STKc_MST4, Catalytic domain of the Protei	8e-05
cd05582	318	cd05582, STKc_RSK_N, N-terminal catalytic domain o	9e-05
cd05603	321	cd05603, STKc_SGK2, Catalytic domain of the Protei	9e-05
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	1e-04
cd07864	302	cd07864, STKc_CDK12, Catalytic domain of the Serin	1e-04
cd05099	314	cd05099, PTKc_FGFR4, Catalytic domain of the Prote	1e-04
cd06642	277	cd06642, STKc_STK25-YSK1, Catalytic domain of the	1e-04
cd05072	261	cd05072, PTKc_Lyn, Catalytic domain of the Protein	1e-04
cd06636	282	cd06636, STKc_MAP4K4_6, Catalytic domain of the Pr	1e-04
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	1e-04
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	1e-04
cd05624	331	cd05624, STKc_MRCK_beta, Catalytic domain of the P	2e-04
cd05066	267	cd05066, PTKc_EphR_A, Catalytic domain of the Prot	2e-04
PHA03210	501	PHA03210, PHA03210, serine/threonine kinase US3; P	2e-04
cd07862	290	cd07862, STKc_CDK6, Catalytic domain of the Serine	2e-04
cd07876	359	cd07876, STKc_JNK2, Catalytic domain of the Serine	2e-04
cd05045	290	cd05045, PTKc_RET, Catalytic domain of the Protein	2e-04
cd05098	307	cd05098, PTKc_FGFR1, Catalytic domain of the Prote	2e-04
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	3e-04
cd05101	304	cd05101, PTKc_FGFR2, Catalytic domain of the Prote	3e-04
cd07869	303	cd07869, STKc_PFTAIRE1, Catalytic domain of the Se	3e-04
cd06637	272	cd06637, STKc_TNIK, Catalytic domain of the Protei	3e-04
cd05091	283	cd05091, PTKc_Ror2, Catalytic domain of the Protei	3e-04
cd05069	260	cd05069, PTKc_Yes, Catalytic domain of the Protein	3e-04
cd05604	325	cd05604, STKc_SGK3, Catalytic domain of the Protei	3e-04
cd05571	323	cd05571, STKc_PKB, Catalytic domain of the Protein	3e-04
cd05633	279	cd05633, STKc_GRK3, Catalytic domain of the Protei	3e-04
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	3e-04
cd05606	278	cd05606, STKc_beta_ARK, Catalytic domain of the Pr	3e-04
cd05103	343	cd05103, PTKc_VEGFR2, Catalytic domain of the Prot	4e-04
cd05600	333	cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fun	4e-04
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	4e-04
cd05619	316	cd05619, STKc_nPKC_theta, Catalytic domain of the	4e-04
cd06643	282	cd06643, STKc_SLK, Catalytic domain of the Protein	4e-04
cd05040	257	cd05040, PTKc_Ack_like, Catalytic domain of the Pr	5e-04
cd05594	325	cd05594, STKc_PKB_alpha, Catalytic domain of the P	5e-04
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	6e-04
cd06652	265	cd06652, STKc_MEKK2, Catalytic domain of the Prote	7e-04
cd05063	268	cd05063, PTKc_EphR_A2, Catalytic domain of the Pro	7e-04
PTZ00266	1021	PTZ00266, PTZ00266, NIMA-related protein kinase; P	7e-04
cd06618	296	cd06618, PKc_MKK7, Catalytic domain of the dual-sp	7e-04
cd06653	264	cd06653, STKc_MEKK3_like_1, Catalytic domain of MA	8e-04
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	9e-04
cd05092	280	cd05092, PTKc_TrkA, Catalytic domain of the Protei	0.001
cd07858	337	cd07858, STKc_TEY_MAPK_plant, Catalytic domain of	0.001
cd05589	324	cd05589, STKc_PKN, Catalytic domain of the Protein	0.001
cd07878	343	cd07878, STKc_p38beta_MAPK11, Catalytic domain of	0.001
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	0.001
cd05062	277	cd05062, PTKc_IGF-1R, Catalytic domain of the Prot	0.001
cd07835	283	cd07835, STKc_CDK1_like, Catalytic domain of Cycli	0.001
cd05073	260	cd05073, PTKc_Hck, Catalytic domain of the Protein	0.001
cd05623	332	cd05623, STKc_MRCK_alpha, Catalytic domain of the	0.001
cd07860	284	cd07860, STKc_CDK2_3, Catalytic domain of the Seri	0.001
PRK13184	932	PRK13184, pknD, serine/threonine-protein kinase; R	0.001
cd05595	323	cd05595, STKc_PKB_beta, Catalytic domain of the Pr	0.001
cd07836	284	cd07836, STKc_Pho85, Catalytic domain of the Serin	0.001
cd05079	284	cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) doma	0.002
cd05622	371	cd05622, STKc_ROCK1, Catalytic domain of the Prote	0.002
cd05570	318	cd05570, STKc_PKC, Catalytic domain of the Protein	0.002
cd07837	295	cd07837, STKc_CdkB_plant, Catalytic domain of the	0.002
PLN00009	294	PLN00009, PLN00009, cyclin-dependent kinase A; Pro	0.002
cd05043	280	cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Rece	0.002
cd07879	342	cd07879, STKc_p38delta_MAPK13, Catalytic domain of	0.002
cd05596	370	cd05596, STKc_ROCK, Catalytic domain of the Protei	0.002
cd06658	292	cd06658, STKc_PAK5, Catalytic domain of the Protei	0.002
cd06648	285	cd06648, STKc_PAK_II, Catalytic domain of the Prot	0.003
cd07856	328	cd07856, STKc_Sty1_Hog1, Catalytic domain of the S	0.003
cd07863	288	cd07863, STKc_CDK4, Catalytic domain of the Serine	0.004
cd05609	305	cd05609, STKc_MAST, Catalytic domain of the Protei	0.004
cd05094	291	cd05094, PTKc_TrkC, Catalytic domain of the Protei	0.004
cd07866	311	cd07866, STKc_BUR1, Catalytic domain of the Serine	0.004
cd06654	296	cd06654, STKc_PAK1, Catalytic domain of the Protei	0.004

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score =  110 bits (277), Expect = 1e-27
 Identities = 75/301 (24%), Positives = 123/301 (40%), Gaps = 96/301 (31%)

Query: 204 IAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDML 261
           + +G    VY A  +  G + A+K++    ++S    +L    +E+  L+K   LN    
Sbjct: 1   LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELL----REIEILKK---LN---- 49

Query: 262 MNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKK 321
                    HPN+V ++  F D                               L+++M+ 
Sbjct: 50  ---------HPNIVKLYGVFED----------------------------ENHLYLVMEY 72

Query: 322 Y-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNT 380
                L++ L+E   +LS  E + +  Q+LEG+ +L+ +   HRDLK +NILL    D+ 
Sbjct: 73  CEGGSLKDLLKENEGKLSEDEILRILLQILEGLEYLHSNGIIHRDLKPENILL----DSD 128

Query: 381 CPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS-KSDA 439
             ++ + DFG S    S  S+  +     + G  A MAPEV      L     YS KSD 
Sbjct: 129 NGKVKLADFGLSKLLTSDKSLLKT-----IVGTPAYMAPEV------LLGKGYYSEKSDI 177

Query: 440 WTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSA 499
           W+ G + YE+                               ++ L+ K+L+ DP  RPSA
Sbjct: 178 WSLGVILYEL-----------------------------PELKDLIRKMLQKDPEKRPSA 208

Query: 500 E 500
           +
Sbjct: 209 K 209

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score =  109 bits (274), Expect = 7e-27
 Identities = 69/316 (21%), Positives = 115/316 (36%), Gaps = 85/316 (26%)

Query: 199 QIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRL 256
           +I + + +G+   VY A  +  G   A+K++                 K+ +   +   L
Sbjct: 2   EILEKLGEGSFGKVYLARDKKTGKLVAIKVI----------------KKKKIKKDRERIL 45

Query: 257 NEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLF 316
            E  ++  ++    HPN+V ++  F D                               L+
Sbjct: 46  REIKILKKLK----HPNIVRLYDVFEDED----------------------------KLY 73

Query: 317 ILMKKYNT-DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDC 375
           ++M+     DL + L++R   LS  E      Q+L  + +L+     HRDLK +NILLD 
Sbjct: 74  LVMEYCEGGDLFDLLKKRGR-LSEDEARFYLRQILSALEYLHSKGIVHRDLKPENILLD- 131

Query: 376 SEDNTCPQLVITDFGSS-YTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY 434
            ED     + + DFG +   +       +        G    MAPEV L          Y
Sbjct: 132 -EDGH---VKLADFGLARQLDPGEKLTTFV-------GTPEYMAPEVLLGKG-------Y 173

Query: 435 S-KSDAWTAGTVAYEIFGHDNPF---------YQSARNTDYEVNALPQLNTNVPEVMRRL 484
               D W+ G + YE+     PF         ++            P    ++    + L
Sbjct: 174 GKAVDIWSLGVILYELLTGKPPFPGDDQLLELFKKIGKPKPP---FPPPEWDISPEAKDL 230

Query: 485 VAKLLENDPSDRPSAE 500
           + KLL  DP  R +AE
Sbjct: 231 IRKLLVKDPEKRLTAE 246

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score =  104 bits (261), Expect = 5e-25
 Identities = 74/316 (23%), Positives = 111/316 (35%), Gaps = 77/316 (24%)

Query: 198 IQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLR 255
            ++ + +  G+   VY+A  +  G   A+K++   S  S                     
Sbjct: 1   YELLRKLGSGSFGTVYKAKHKGTGKIVAVKILKKRSEKSKKDQT---------------A 45

Query: 256 LNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSL 315
             E  ++  +     HPN+V +  AF D         L+              Y     L
Sbjct: 46  RREIRILRRLS----HPNIVRLIDAFEDK----DHLYLVME------------YCEGGDL 85

Query: 316 FILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDC 375
           F  + +               LS  E   +  Q+L G+ +L+ +   HRDLK +NILLD 
Sbjct: 86  FDYLSRGGP------------LSEDEAKKIALQILRGLEYLHSNGIIHRDLKPENILLD- 132

Query: 376 SEDNTCPQLVITDFGSS-YTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY 434
                     I DFG +    KS  S+          G    MAPEV      L     Y
Sbjct: 133 ENGVVK----IADFGLAKKLLKSSSSLT------TFVGTPWYMAPEV------LLGGNGY 176

Query: 435 S-KSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNAL---PQLNTNVPEV------MRRL 484
             K D W+ G + YE+     PF         ++      P L  + P+        + L
Sbjct: 177 GPKVDVWSLGVILYELLTGKPPFSGENILDQLQLIRRILGPPLEFDEPKWSSGSEEAKDL 236

Query: 485 VAKLLENDPSDRPSAE 500
           + K L  DPS RP+AE
Sbjct: 237 IKKCLNKDPSKRPTAE 252

Length = 260

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 92.6 bits (231), Expect = 5e-21
 Identities = 70/332 (21%), Positives = 119/332 (35%), Gaps = 108/332 (32%)

Query: 197 DIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPL 254
           +   G+ + +G+   VY A  +  G   A+K +     + +S   L+A+ +E+  L    
Sbjct: 1   EWTRGELLGRGSFGSVYLALDKDTGELMAVKSVE---LSGDSEEELEALEREIRILS--- 54

Query: 255 RLNEDMLMNSVENLPPHPNVVVMHFA-----------FTDFVPSIPDSSLIYPSALPARL 303
            L              HPN+V  + +           F ++V                  
Sbjct: 55  SLQ-------------HPNIVRYYGSERDEEKNTLNIFLEYVS----------------- 84

Query: 304 NPTGGYGRNMSLFILMKKYN----TDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMH 359
              GG     SL  L+KK+       +R Y R                Q+LEG+ +L+ +
Sbjct: 85  ---GG-----SLSSLLKKFGKLPEPVIRKYTR----------------QILEGLAYLHSN 120

Query: 360 RTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAP 419
              HRD+K  NIL+D         + + DFG +   K    ++       + G    MAP
Sbjct: 121 GIVHRDIKGANILVDSDG-----VVKLADFGCA---KRLGDIETGEGTGSVRGTPYWMAP 172

Query: 420 EVALATPGLFSFVNYS-KSDAWTAGTVAYEIFG-------HDNPF---YQSARNTDYEVN 468
           EV            Y   +D W+ G    E+           NP    Y+   + +    
Sbjct: 173 EVIRGEE-------YGRAADIWSLGCTVIEMATGKPPWSELGNPMAALYKIGSSGE---- 221

Query: 469 ALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
             P++  ++ E  +  + K L  DP  RP+A+
Sbjct: 222 -PPEIPEHLSEEAKDFLRKCLRRDPKKRPTAD 252

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 85.3 bits (212), Expect = 1e-18
 Identities = 63/274 (22%), Positives = 112/274 (40%), Gaps = 60/274 (21%)

Query: 240 LKAMSKELLPLRKPLR--LNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPS 297
           +K + K+ +  RK +   L E  +++ +     HP +V +H+AF                
Sbjct: 23  MKVLKKKKIIKRKEVEHTLTERNILSRI----NHPFIVKLHYAFQT-------------- 64

Query: 298 ALPARLNPTGGYGRNMSLFILMKKYNT-DLRNYLRERCAQLSMHERVLLFT-QLLEGVTH 355
                            L+++++     +L ++L +   + S  ER   +  +++  + +
Sbjct: 65  --------------EEKLYLVLEYAPGGELFSHLSKE-GRFSE-ERARFYAAEIVLALEY 108

Query: 356 LNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVA 415
           L+     +RDLK +NILLD   D     + +TDFG +    S  S   +       G   
Sbjct: 109 LHSLGIIYRDLKPENILLD--ADG---HIKLTDFGLAKELSSEGSRTNTFC-----GTPE 158

Query: 416 LMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYE-IFGHDNPFYQSARNTDYE--VNALP 471
            +APEV L          Y K+ D W+ G + YE + G   PFY   R   YE  +    
Sbjct: 159 YLAPEVLLGKG-------YGKAVDWWSLGVLLYEMLTGK-PPFYAEDRKEIYEKILKDPL 210

Query: 472 QLNTNVPEVMRRLVAKLLENDPSDRPSAELAATV 505
           +    +    R L++ LL+ DP+ R  +  A  +
Sbjct: 211 RFPEFLSPEARDLISGLLQKDPTKRLGSGGAEEI 244

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 77.5 bits (192), Expect = 7e-16
 Identities = 69/316 (21%), Positives = 120/316 (37%), Gaps = 81/316 (25%)

Query: 198 IQIGKFIAKGTNAVVYEATFRGVEY------ALKMMFNYSAASNSHAILKAMSKELLPLR 251
           +++GK + +G    VY+ T +G         A+K +   ++       L+  S       
Sbjct: 1   LELGKKLGEGAFGEVYKGTLKGDGEGTETKVAVKTLKEGASEEEREEFLEEAS------- 53

Query: 252 KPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGR 311
                    +M  +     HPN+V +    T   P      ++                 
Sbjct: 54  ---------IMKKLS----HPNIVRLLGVCTQGEPLY----IVTE--------------- 81

Query: 312 NMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNI 371
                  M     DL ++LR+   +L++ + + +  Q+ +G+ +L      HRDL + N 
Sbjct: 82  ------YMP--GGDLLDFLRKHGEKLTLKDLLQMALQIAKGMEYLESKNFVHRDLAARNC 133

Query: 372 LLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF 431
           L+   E+       I+DFG S   +      Y          +  MAPE      G F+ 
Sbjct: 134 LVT--ENLVV---KISDFGLS---RDIYEDDYYRKRGGGKLPIKWMAPESLKD--GKFT- 182

Query: 432 VNYSKSDAWTAGTVAYEIF--GHDNPFYQSARNTDYEV-------NALPQLNTNVPEVMR 482
              SKSD W+ G + +EIF  G + P+      ++ EV         LP+   N P+ + 
Sbjct: 183 ---SKSDVWSFGVLLWEIFTLG-EQPYPG---MSNEEVLELLEDGYRLPR-PENCPDELY 234

Query: 483 RLVAKLLENDPSDRPS 498
            L+ +    DP DRP+
Sbjct: 235 ELMLQCWAYDPEDRPT 250

Length = 258

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 77.2 bits (191), Expect = 1e-15
 Identities = 72/335 (21%), Positives = 120/335 (35%), Gaps = 95/335 (28%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKP 253
           DD + GK I +G+ + V  A  +    EYA+K                 + K  L     
Sbjct: 1   DDFKFGKIIGEGSFSTVVLAKEKETNKEYAIK----------------ILDKRQL----- 39

Query: 254 LRLNEDMLMNSVEN-------LPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPT 306
           ++  +   +  V+        L  HP ++ +++ F D      + +L +   L       
Sbjct: 40  IKEKK---VKYVKIEKEVLTRLNGHPGIIKLYYTFQD------EENLYF--VL------- 81

Query: 307 GGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDL 366
             Y  N  L   ++KY +     L E+C +           ++L  + +L+     HRDL
Sbjct: 82  -EYAPNGELLQYIRKYGS-----LDEKCTRFYAA-------EILLALEYLHSKGIIHRDL 128

Query: 367 KSDNILLDCSEDNTCPQLVITDFGSSY----TNKSGLSMQYSSADIELG----------- 411
           K +NILLD  +D     + ITDFG++      +    +   ++                 
Sbjct: 129 KPENILLD--KDMH---IKITDFGTAKVLDPNSSPESNKGDATNIDSQIEKNRRRFASFV 183

Query: 412 GNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV---- 467
           G    ++PE+    P        S SD W  G + Y++     PF  S    +Y      
Sbjct: 184 GTAEYVSPELLNEKP-----AGKS-SDLWALGCIIYQMLTGKPPFRGS---NEYLTFQKI 234

Query: 468 -NALPQLNTNVPEVMRRLVAKLLENDPSDRPSAEL 501
                    N P   + L+ KLL  DP DR     
Sbjct: 235 LKLEYSFPPNFPPDAKDLIEKLLVLDPQDRLGVNE 269

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 74.8 bits (185), Expect = 5e-15
 Identities = 52/210 (24%), Positives = 84/210 (40%), Gaps = 55/210 (26%)

Query: 314 SLFILMKKY--NTDLRNYLRERCAQ---LSMHERVLLFTQLLEGVTHLNMHRTAHRDLKS 368
            L I+M+ Y    DL   ++++  +       + +  F QL   + +L+  +  HRD+K 
Sbjct: 73  KLCIVME-YADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHSRKILHRDIKP 131

Query: 369 DNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVAL--------MAPE 420
            NI L  S       + + DF        G+S   SS       ++A         ++PE
Sbjct: 132 QNIFL-TSNGL----VKLGDF--------GISKVLSSTV-----DLAKTVVGTPYYLSPE 173

Query: 421 VALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNAL--------- 470
                  L     Y+ KSD W+ G V YE+    +PF     N    +  L         
Sbjct: 174 -------LCQNKPYNYKSDIWSLGCVLYELCTLKHPFE--GEN----LLELALKILKGQY 220

Query: 471 PQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
           P + +     +R LV+ LL+ DP +RPS  
Sbjct: 221 PPIPSQYSSELRNLVSSLLQKDPEERPSIA 250

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 73.3 bits (181), Expect = 2e-14
 Identities = 54/185 (29%), Positives = 81/185 (43%), Gaps = 33/185 (17%)

Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           DL +YLR+   +LS+ + +    Q+  G+ +L      HRDL + N L+   E+      
Sbjct: 87  DLLSYLRKNRPKLSLSDLLSFALQIARGMEYLESKNFIHRDLAARNCLVG--ENLVVK-- 142

Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVAL--MAPEVALATPGLFSFVNYSKSDAWTA 442
            I+DFG S   +      Y       GG + +  MAPE       L      SKSD W+ 
Sbjct: 143 -ISDFGLS---RDLYDDDYYRKR---GGKLPIRWMAPES------LKEGKFTSKSDVWSF 189

Query: 443 GTVAYEIF--GHDNPFYQSARNTDYEV-------NALPQLNTNVPEVMRRLVAKLLENDP 493
           G + +EIF  G + P+      ++ EV         LPQ   N P  +  L+ +    DP
Sbjct: 190 GVLLWEIFTLG-EQPYPGM---SNEEVLEYLKNGYRLPQPP-NCPPELYDLMLQCWAEDP 244

Query: 494 SDRPS 498
            DRP+
Sbjct: 245 EDRPT 249

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 73.2 bits (178), Expect = 8e-14
 Identities = 68/320 (21%), Positives = 112/320 (35%), Gaps = 72/320 (22%)

Query: 199 QIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNE 258
           +I + + +G+   VY A  R    ALK++       +    ++   +E+  L        
Sbjct: 3   RILRKLGEGSFGEVYLARDR-KLVALKVLAK--KLESKSKEVERFLREIQILAS------ 53

Query: 259 DMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFIL 318
                    L   PN+V ++  F D                              SL+++
Sbjct: 54  ---------LNHPPNIVKLYDFFQD----------------------------EGSLYLV 76

Query: 319 MKKY-NTDLRNYLRER--CAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDC 375
           M+      L + L++      LS  E + +  Q+L  + +L+     HRD+K +NILLD 
Sbjct: 77  MEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHSKGIIHRDIKPENILLDR 136

Query: 376 SEDNTCPQLVITDFG-SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY 434
                   + + DFG +      G +    +      G    MAPEV L   GL      
Sbjct: 137 DGR----VVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPEVLL---GLSLAYAS 189

Query: 435 SKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV---------------NALPQLNTNVPE 479
           S SD W+ G   YE+     PF     ++                      P     + +
Sbjct: 190 SSSDIWSLGITLYELLTGLPPFEGEKNSSATSQTLKIILELPTPSLASPLSPSNPELISK 249

Query: 480 VMRRLVAKLLENDPSDRPSA 499
               L+ KLL  DP +R S+
Sbjct: 250 AASDLLKKLLAKDPKNRLSS 269

Length = 384

>gnl|CDD|177557 PHA03209, PHA03209, serine/threonine kinase US3; Provisional

 Score = 71.8 bits (176), Expect = 1e-13
 Identities = 45/151 (29%), Positives = 78/151 (51%), Gaps = 19/151 (12%)

Query: 317 ILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCS 376
           +++  Y++DL  YL +R   L + + +++  Q+LEG+ +L+  R  HRD+K++NI ++  
Sbjct: 134 MVLPHYSSDLYTYLTKRSRPLPIDQALIIEKQILEGLRYLHAQRIIHRDVKTENIFIN-D 192

Query: 377 EDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY-S 435
            D  C    I D G++           + A + L G V   APEV LA         Y S
Sbjct: 193 VDQVC----IGDLGAAQFPVV------APAFLGLAGTVETNAPEV-LARD------KYNS 235

Query: 436 KSDAWTAGTVAYEIFGHDNPFYQSARNTDYE 466
           K+D W+AG V +E+  + +  ++   +T  E
Sbjct: 236 KADIWSAGIVLFEMLAYPSTIFEDPPSTPEE 266

Length = 357

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score = 70.6 bits (173), Expect = 2e-13
 Identities = 50/176 (28%), Positives = 77/176 (43%), Gaps = 42/176 (23%)

Query: 345 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSS------YTNKSG 398
              Q+LEG+ +L+     HRDLK+DN+L+D   D  C    I+DFG S      Y N   
Sbjct: 113 FTEQVLEGLAYLHSKGILHRDLKADNLLVD--ADGICK---ISDFGISKKSDDIYDNDQN 167

Query: 399 LSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQ 458
           +SMQ         G+V  MAPEV  +    +S    +K D W+ G V  E+F    P+  
Sbjct: 168 MSMQ---------GSVFWMAPEVIHSYSQGYS----AKVDIWSLGCVVLEMFAGRRPW-- 212

Query: 459 SARNTDYEVNAL-------------PQLNTNVPEVMRRLVAKLLENDPSDRPSAEL 501
              + +  + A+             P ++ N+  V    +      +P +RP+A  
Sbjct: 213 ---SDEEAIAAMFKLGNKRSAPPIPPDVSMNLSPVALDFLNACFTINPDNRPTARE 265

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 69.9 bits (172), Expect = 2e-13
 Identities = 72/328 (21%), Positives = 117/328 (35%), Gaps = 110/328 (33%)

Query: 199 QIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRL 256
           +I + I KG    VY+A  +  G E A+K++    +      I+     E+  L+K    
Sbjct: 3   EILEKIGKGGFGEVYKARHKRTGKEVAIKVI-KLESKEKKEKIIN----EIQILKK---- 53

Query: 257 NEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLF 316
                         HPN+V  +                            G Y +   L+
Sbjct: 54  -----CK-------HPNIVKYY----------------------------GSYLKKDELW 73

Query: 317 ILMKKYNTDLRNYLRERCAQLS----MHERVLLFT---------QLLEGVTHLNMHRTAH 363
           I+M            E C+  S    +       T         +LL+G+ +L+ +   H
Sbjct: 74  IVM------------EFCSGGSLKDLLKSTNQTLTESQIAYVCKELLKGLEYLHSNGIIH 121

Query: 364 RDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVAL 423
           RD+K+ NILL      +  ++ + DFG S             A   + G    MAPEV  
Sbjct: 122 RDIKAANILL-----TSDGEVKLIDFGLSAQLSDT------KARNTMVGTPYWMAPEVIN 170

Query: 424 ATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVP---- 478
             P       Y  K+D W+ G  A E+     P+ +        + AL ++ TN P    
Sbjct: 171 GKP-------YDYKADIWSLGITAIELAEGKPPYSELPP-----MKALFKIATNGPPGLR 218

Query: 479 ------EVMRRLVAKLLENDPSDRPSAE 500
                 +  +  + K L+ +P  RP+AE
Sbjct: 219 NPEKWSDEFKDFLKKCLQKNPEKRPTAE 246

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 68.7 bits (169), Expect = 6e-13
 Identities = 54/186 (29%), Positives = 83/186 (44%), Gaps = 34/186 (18%)

Query: 325 DLRNYLRE-RCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQ 383
           DL +YLR+ R  +LS+ + +    Q+  G+ +L      HRDL + N L+   E+     
Sbjct: 87  DLLDYLRKNRPKELSLSDLLSFALQIARGMEYLESKNFIHRDLAARNCLV--GENLVVK- 143

Query: 384 LVITDFGSSYTNKSGLSMQYSSADIELGGNVAL--MAPEVALATPGLFSFVNYSKSDAWT 441
             I+DFG S   +      Y       GG + +  MAPE       L      SKSD W+
Sbjct: 144 --ISDFGLS---RDLYDDDYYKVK---GGKLPIRWMAPES------LKEGKFTSKSDVWS 189

Query: 442 AGTVAYEIF--GHDNPFYQSARNTDYEV-------NALPQLNTNVPEVMRRLVAKLLEND 492
            G + +EIF  G + P+      ++ EV         LP+   N P  + +L+ +    D
Sbjct: 190 FGVLLWEIFTLG-EEPYP---GMSNAEVLEYLKKGYRLPKPP-NCPPELYKLMLQCWAED 244

Query: 493 PSDRPS 498
           P DRP+
Sbjct: 245 PEDRPT 250

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 67.5 bits (166), Expect = 2e-12
 Identities = 53/228 (23%), Positives = 86/228 (37%), Gaps = 58/228 (25%)

Query: 312 NMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFT-QLLEGVTHLNMHRTAHRDLKSDN 370
              L+++ +  + DL+ YL +R   LS +  +     QLL G+ + + HR  HRDLK  N
Sbjct: 70  ERKLYLVFEYCDMDLKKYLDKRPGPLSPNL-IKSIMYQLLRGLAYCHSHRILHRDLKPQN 128

Query: 371 ILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALM---APEVALATPG 427
           IL++   D     L + DF        GL+  +          V  +   APE+ L +  
Sbjct: 129 ILIN--RDGV---LKLADF--------GLARAFGIPLRTYTHEVVTLWYRAPEILLGSK- 174

Query: 428 LFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDY-----------------EVNA 469
                +YS + D W+ G +  E+     P +      D                   V  
Sbjct: 175 -----HYSTAVDIWSVGCIFAEMITGK-PLFPGDSEIDQLFKIFQILGTPTEESWPGVTK 228

Query: 470 LPQLNTNVP---------------EVMRRLVAKLLENDPSDRPSAELA 502
           LP      P                    L++K+L+ +P+ R SA+ A
Sbjct: 229 LPDYKPTFPKFPPKDLEKVLPRLDPEGIDLLSKMLQYNPAKRISAKEA 276

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 65.7 bits (160), Expect = 8e-12
 Identities = 44/163 (26%), Positives = 76/163 (46%), Gaps = 26/163 (15%)

Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
           QLL G+++L+ ++  HRD+K  N+L+    D+T  +L I DFG++    + L+ + + A 
Sbjct: 111 QLLRGLSYLHENQIIHRDVKGANLLI----DSTGQRLRIADFGAA----ARLAAKGTGAG 162

Query: 408 I---ELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNT 463
               +L G +A MAPEV            Y +S D W+ G V  E+     P+     + 
Sbjct: 163 EFQGQLLGTIAFMAPEVLRGEQ-------YGRSCDVWSVGCVIIEMATAKPPWNAEKHSN 215

Query: 464 DYEV-------NALPQLNTNVPEVMRRLVAKLLENDPSDRPSA 499
              +          P +  ++   +R +  + LE  P DRP +
Sbjct: 216 HLALIFKIASATTAPSIPEHLSPGLRDVTLRCLELQPEDRPPS 258

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 65.1 bits (159), Expect = 1e-11
 Identities = 52/172 (30%), Positives = 76/172 (44%), Gaps = 21/172 (12%)

Query: 339 MHERVL-LFT-QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNK 396
           + E V+ ++T QLLEG+ +L+ H   HRD+K  NI LD    N   +L   DFG +   K
Sbjct: 96  LDEHVIRVYTLQLLEGLAYLHSHGIVHRDIKPANIFLD---HNGVIKLG--DFGCAVKLK 150

Query: 397 SGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNP 455
           +  +         L G  A MAPEV     G      + ++ D W+ G V  E+     P
Sbjct: 151 NN-TTTMGEEVQSLAGTPAYMAPEVITGGKG----KGHGRAADIWSLGCVVLEMATGKRP 205

Query: 456 FYQSARNTD--YEVNA-----LPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
           + +        + V A     +P      PE    L  + LE+DP  RP+A 
Sbjct: 206 WSELDNEFQIMFHVGAGHKPPIPDSLQLSPEGKDFL-DRCLESDPKKRPTAS 256

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 65.3 bits (160), Expect = 1e-11
 Identities = 81/316 (25%), Positives = 128/316 (40%), Gaps = 96/316 (30%)

Query: 204 IAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDML 261
           I +G +  VY+AT R  G E A+K M            L+  +KEL+       +NE ++
Sbjct: 27  IGEGASGEVYKATDRATGKEVAIKKM-----------RLRKQNKELI-------INEILI 68

Query: 262 MNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKK 321
           M   +    HPN+V       D+     DS L+            G       L+++M+ 
Sbjct: 69  MKDCK----HPNIV-------DYY----DSYLV------------GDE-----LWVVMEY 96

Query: 322 YN----TDLRNYLRERC--AQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDC 375
            +    TD+      R    Q++    V    ++L+G+ +L+     HRD+KSDNILL  
Sbjct: 97  MDGGSLTDIITQNFVRMNEPQIA---YVCR--EVLQGLEYLHSQNVIHRDIKSDNILL-- 149

Query: 376 SEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS 435
           S+D +     + DFG +       S + S     + G    MAPEV            Y 
Sbjct: 150 SKDGSVK---LADFGFAAQLTKEKSKRNS-----VVGTPYWMAPEVIKRKD-------YG 194

Query: 436 -KSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTN-VPEV---------MRRL 484
            K D W+ G +  E+   + P+       +  + AL  + T  +P +          +  
Sbjct: 195 PKVDIWSLGIMCIEMAEGEPPYL-----REPPLRALFLITTKGIPPLKNPEKWSPEFKDF 249

Query: 485 VAKLLENDPSDRPSAE 500
           + K L  DP  RPSAE
Sbjct: 250 LNKCLVKDPEKRPSAE 265

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 64.9 bits (159), Expect = 1e-11
 Identities = 72/320 (22%), Positives = 109/320 (34%), Gaps = 84/320 (26%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKP 253
            D++  K + +G++ VVY+   +  G  YALK               K + +EL    K 
Sbjct: 1   SDLERVKVLGQGSSGVVYKVRHKPTGKIYALK----KIHVDGDEEFRKQLLREL----KT 52

Query: 254 LRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNM 313
           LR  E             P VV  + AF            I    +       G      
Sbjct: 53  LRSCE------------SPYVVKCYGAF-------YKEGEIS---IVLEYMDGG------ 84

Query: 314 SLFILMKKYNTDLRNYLRERCAQLSMHERVL--LFTQLLEGVTHL-NMHRTAHRDLKSDN 370
           SL  L+KK                 + E VL  +  Q+L+G+ +L       HRD+K  N
Sbjct: 85  SLADLLKKVGK--------------IPEPVLAYIARQILKGLDYLHTKRHIIHRDIKPSN 130

Query: 371 ILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFS 430
           +L+     N+  ++ I DFG S   ++ L    +       G V  M+PE          
Sbjct: 131 LLI-----NSKGEVKIADFGISKVLENTLDQCNTFV-----GTVTYMSPE-------RIQ 173

Query: 431 FVNYS-KSDAWTAGTVAYE-IFGHDNPFYQSARNTDY--------EVNALPQLNTNVPEV 480
             +YS  +D W+ G    E   G   PF        +        +              
Sbjct: 174 GESYSYAADIWSLGLTLLECALGK-FPF-LPPGQPSFFELMQAICDGPPPSLPAEEFSPE 231

Query: 481 MRRLVAKLLENDPSDRPSAE 500
            R  ++  L+ DP  RPSA 
Sbjct: 232 FRDFISACLQKDPKKRPSAA 251

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 83/323 (25%), Positives = 120/323 (37%), Gaps = 82/323 (25%)

Query: 196 DDIQIGKFIAKGTNAVVYEATF--RGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKP 253
           DD ++ + I  G  AVVY A       + A+K +            L+     +  LRK 
Sbjct: 1   DDYELIEVIGVGATAVVYAAICLPNNEKVAIKRI-----------DLEKCQTSVDELRK- 48

Query: 254 LRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNM 313
               E   M+       HPNVV  + +F           L       +     GG     
Sbjct: 49  ----EVQAMSQCN----HPNVVKYYTSFVV------GDELWLVMPYLS-----GG----- 84

Query: 314 SLFILMK-KYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNIL 372
           SL  +MK  Y       L E      + E       +L+G+ +L+ +   HRD+K+ NIL
Sbjct: 85  SLLDIMKSSYPRGG---LDEAIIATVLKE-------VLKGLEYLHSNGQIHRDIKAGNIL 134

Query: 373 LDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV 432
           L   ED +   + I DFG S +   G             G    MAPEV     G     
Sbjct: 135 LG--EDGS---VKIADFGVSASLADGGDRT-RKVRKTFVGTPCWMAPEVMEQVHG----- 183

Query: 433 NY-SKSDAWTAGTVAYEIFGHDNPFYQSARNTDY---EV------NALPQLNTNVP---- 478
            Y  K+D W+ G  A E+     P+        Y   +V      N  P L T       
Sbjct: 184 -YDFKADIWSFGITAIELATGAAPYS------KYPPMKVLMLTLQNDPPSLETGADYKKY 236

Query: 479 -EVMRRLVAKLLENDPSDRPSAE 500
            +  R++++  L+ DPS RP+AE
Sbjct: 237 SKSFRKMISLCLQKDPSKRPTAE 259

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score = 63.5 bits (155), Expect = 4e-11
 Identities = 65/271 (23%), Positives = 100/271 (36%), Gaps = 70/271 (25%)

Query: 240 LKAMSKELLPLRKPLR--LNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPS 297
           +K M+K+    +  +R  LNE  ++  +     HP +V + ++F D              
Sbjct: 30  MKYMNKQKCVEKGSVRNVLNERRILQELN----HPFLVNLWYSFQD-------------- 71

Query: 298 ALPARLNPTGGYGRNMSLFI-LMKKYNTDLRNYL------RERCAQLSMHERVLLFTQLL 350
                         NM L + L+     DLR +L       E   +  + E VL      
Sbjct: 72  ------------EENMYLVVDLL--LGGDLRYHLSQKVKFSEEQVKFWICEIVL------ 111

Query: 351 EGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIEL 410
             + +L+     HRD+K DNILLD  E        ITDF  + T  +  ++  S++    
Sbjct: 112 -ALEYLHSKGIIHRDIKPDNILLD--EQGHVH---ITDFNIA-TKVTPDTLTTSTS---- 160

Query: 411 GGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNAL 470
            G    MAPEV      L         D W+ G  AYE      P+   +R    ++ A 
Sbjct: 161 -GTPGYMAPEV------LCRQGYSVAVDWWSLGVTAYECLRGKRPYRGHSRTIRDQIRAK 213

Query: 471 PQLNTNV-----PEVMRRLVAKLLENDPSDR 496
            +    +            + KLLE DP  R
Sbjct: 214 QETADVLYPATWSTEAIDAINKLLERDPQKR 244

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 62.8 bits (153), Expect = 5e-11
 Identities = 81/314 (25%), Positives = 126/314 (40%), Gaps = 80/314 (25%)

Query: 197 DIQIGKFIAKGTNAVVYEATFR---GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKP 253
           D ++ K + KG+   VY+   R      YALK +            L +MS++     + 
Sbjct: 1   DFKVLKKLGKGSYGSVYKVK-RLSDNQFYALKEV-----------DLGSMSQK----ERE 44

Query: 254 LRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNM 313
             +NE  ++ SV     HPN++    AF D                          G   
Sbjct: 45  DAVNEIRILASVN----HPNIISYKEAFLD--------------------------GN-- 72

Query: 314 SLFILMKKY--NTDLRNYLRERCAQLSMHERVLL---FTQLLEGVTHLNMHRTAHRDLKS 368
            L I+M+ Y    DL   + +R  +  +     +   F QLL G+  L+  +  HRDLKS
Sbjct: 73  KLCIVME-YAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHEQKILHRDLKS 131

Query: 369 DNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGL 428
            NILL  + D     + I D G S   K  +      A  ++ G    MAPEV    P  
Sbjct: 132 ANILL-VAND----LVKIGDLGISKVLKKNM------AKTQI-GTPHYMAPEVWKGRP-- 177

Query: 429 FSFVNYS-KSDAWTAGTVAYEIFGHDNPFY-QSARNTDYEV--NALPQLNTNVPEVMRRL 484
                YS KSD W+ G + YE+     PF  +S ++  Y+V     P +     + ++  
Sbjct: 178 -----YSYKSDIWSLGCLLYEMATFAPPFEARSMQDLRYKVQRGKYPPIPPIYSQDLQNF 232

Query: 485 VAKLLENDPSDRPS 498
           +  +L+  P  RP+
Sbjct: 233 IRSMLQVKPKLRPN 246

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|240344 PTZ00283, PTZ00283, serine/threonine protein kinase; Provisional

 Score = 64.1 bits (156), Expect = 8e-11
 Identities = 62/201 (30%), Positives = 89/201 (44%), Gaps = 36/201 (17%)

Query: 325 DLRNYLRERCAQ---LSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTC 381
           DLR  ++ R         HE  LLF Q+L  V H++     HRD+KS NILL CS  N  
Sbjct: 125 DLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHSKHMIHRDIKSANILL-CS--NGL 181

Query: 382 PQLVITDFGSSYTNKSGLSMQYS---SADI--ELGGNVALMAPEVALATPGLFSFVNYS- 435
            +L   DF        G S  Y+   S D+     G    +APE+    P       YS 
Sbjct: 182 VKL--GDF--------GFSKMYAATVSDDVGRTFCGTPYYVAPEIWRRKP-------YSK 224

Query: 436 KSDAWTAGTVAYEIFGHDNPF----YQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLEN 491
           K+D ++ G + YE+     PF     +   +        P   +  PE M+ +V  LL +
Sbjct: 225 KADMFSLGVLLYELLTLKRPFDGENMEEVMHKTLAGRYDPLPPSISPE-MQEIVTALLSS 283

Query: 492 DPSDRPSAE--LAATVCQLYL 510
           DP  RPS+   L   +C+L++
Sbjct: 284 DPKRRPSSSKLLNMPICKLFI 304

Length = 496

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 62.6 bits (153), Expect = 8e-11
 Identities = 76/319 (23%), Positives = 108/319 (33%), Gaps = 106/319 (33%)

Query: 211 VVYEATFRGVEY-----ALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSV 265
            VY+   +G +      A+K +   +    S    K   KE              +M  +
Sbjct: 10  EVYKGKLKGKDGKTTEVAVKTLKEDA----SEEERKDFLKEA------------RVMKKL 53

Query: 266 ENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGY----GRNMSLFILMKK 321
                HPNVV                 L+             G          +   M+ 
Sbjct: 54  G----HPNVV----------------RLL-------------GVCTEEEPLYLVLEYME- 79

Query: 322 YNTDLRNYLRE-RCAQLSMHERVLLFTQLLE-------GVTHLNMHRTAHRDLKSDNILL 373
              DL +YLR+ R    S  +  L    LL        G+ +L   +  HRDL + N L+
Sbjct: 80  -GGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLASKKFVHRDLAARNCLV 138

Query: 374 DCSEDNTCPQLVITDFG-SSYTNKSGLSMQYSSADIELGGNVAL----MAPEVALATPGL 428
              ED       I+DFG S           Y            L    MAPE +L   G+
Sbjct: 139 G--EDLVVK---ISDFGLSRDV--------YDDDYYRKKTGGKLPIRWMAPE-SLKD-GI 183

Query: 429 FSFVNYSKSDAWTAGTVAYEIF--GHDNPFYQSARNTDYEV-------NALPQLNTNVPE 479
           F+    SKSD W+ G + +EIF  G   P Y    N   EV         LP+     P+
Sbjct: 184 FT----SKSDVWSFGVLLWEIFTLG-ATP-YPGLSNE--EVLEYLRKGYRLPKP-EYCPD 234

Query: 480 VMRRLVAKLLENDPSDRPS 498
            +  L+    + DP DRP+
Sbjct: 235 ELYELMLSCWQLDPEDRPT 253

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

 Score = 62.1 bits (151), Expect = 1e-10
 Identities = 78/323 (24%), Positives = 112/323 (34%), Gaps = 84/323 (26%)

Query: 195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALK--MMFNYSAASNSHAILKAMSKELLPL 250
           + + +I K I KG  +VVY+A     G   ALK   +F    A      LK +      L
Sbjct: 1   LGNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEID-----L 55

Query: 251 RKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYG 310
            K L                HPNV+    +F      I ++ L     +   L   G   
Sbjct: 56  LKQLD---------------HPNVIKYLASF------IENNELN----IVLELADAGDLS 90

Query: 311 RNMSLFILMKKYNTDLRNYLRERCAQLSMHERVL--LFTQLLEGVTHLNMHRTAHRDLKS 368
           R      ++K +    R           + ER +   F QL   + H++  R  HRD+K 
Sbjct: 91  R------MIKHFKKQKR----------LIPERTIWKYFVQLCSALEHMHSKRIMHRDIKP 134

Query: 369 DNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIE---LGGNVALMAPEVALAT 425
            N+              IT  G       GL   +SS       L G    M+PE     
Sbjct: 135 ANVF-------------ITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHEN 181

Query: 426 PGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARN--------TDYEVNALPQLNTNV 477
              F      KSD W+ G + YE+    +PFY    N           +   LP    + 
Sbjct: 182 GYNF------KSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEKCDYPPLP--ADHY 233

Query: 478 PEVMRRLVAKLLENDPSDRPSAE 500
            E +R LV++ +  DP  RP   
Sbjct: 234 SEELRDLVSRCINPDPEKRPDIS 256

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may also be regulators of the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score = 61.4 bits (149), Expect = 2e-10
 Identities = 48/160 (30%), Positives = 76/160 (47%), Gaps = 23/160 (14%)

Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG-SSYTNKSGLSMQYSSA 406
           Q+L+G+ +L+     HRD+K  NIL+D         + I+DFG S     + LS + + A
Sbjct: 114 QILKGLNYLHNRGIIHRDIKGANILVDNKG-----GIKISDFGISKKLEANSLSTKTNGA 168

Query: 407 DIELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTDY 465
              L G+V  MAPEV   T       +Y+ K+D W+ G +  E+    +PF      T  
Sbjct: 169 RPSLQGSVFWMAPEVVKQT-------SYTRKADIWSLGCLVVEMLTGKHPF---PDCTQL 218

Query: 466 EV------NALPQLNTNVPEVMRRLVAKLLENDPSDRPSA 499
           +       NA P++ +N+       + K  E D + RP+A
Sbjct: 219 QAIFKIGENASPEIPSNISSEAIDFLEKTFEIDHNKRPTA 258

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|173765 cd08225, STKc_Nek5, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

 Score = 60.7 bits (147), Expect = 3e-10
 Identities = 66/281 (23%), Positives = 115/281 (40%), Gaps = 71/281 (25%)

Query: 233 ASNSHAILKAMSKELLPLR-KPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDS 291
           + + H ++K +    +P++ K     E +L+  ++    HPN+V    +F +        
Sbjct: 23  SDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMK----HPNIVTFFASFQE-------- 70

Query: 292 SLIYPSALPARLNPTGGYGRNMSLFILMKKYNT-DLRNYL-RERCAQLSMHERVLLFTQL 349
                               N  LFI+M+  +  DL   + R+R    S  + +  F Q+
Sbjct: 71  --------------------NGRLFIVMEYCDGGDLMKRINRQRGVLFSEDQILSWFVQI 110

Query: 350 LEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIE 409
             G+ H++  +  HRD+KS NI L  S++    +L   DFG +      + + Y+     
Sbjct: 111 SLGLKHIHDRKILHRDIKSQNIFL--SKNGMVAKL--GDFGIARQLNDSMELAYTCV--- 163

Query: 410 LGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNA 469
             G    ++PE+    P        +K+D W+ G V YE+    +PF         E N 
Sbjct: 164 --GTPYYLSPEICQNRP------YNNKTDIWSLGCVLYELCTLKHPF---------EGNN 206

Query: 470 LPQL------------NTNVPEVMRRLVAKLLENDPSDRPS 498
           L QL            + N    +R L+++L +  P DRPS
Sbjct: 207 LHQLVLKICQGYFAPISPNFSRDLRSLISQLFKVSPRDRPS 247

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. Length = 257

>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

 Score = 60.6 bits (147), Expect = 3e-10
 Identities = 52/179 (29%), Positives = 76/179 (42%), Gaps = 26/179 (14%)

Query: 326 LRNYLRERCAQLSMHERVL-LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           L  Y+++RC  L   + +L  F Q+L  + H++     HRDLK+ NILLD  +      +
Sbjct: 86  LAEYIQKRCNSLLDEDTILHFFVQILLALHHVHTKLILHRDLKTQNILLDKHKM----VV 141

Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAG 443
            I DFG S    S       S    + G    ++PE+    P       Y+ KSD W  G
Sbjct: 142 KIGDFGISKILSS------KSKAYTVVGTPCYISPELCEGKP-------YNQKSDIWALG 188

Query: 444 TVAYEIFGHDNPFYQSARNTDYEV-----NALPQLNTNVPEVMRRLVAKLLENDPSDRP 497
            V YE+      F   A N    V          ++      +R+L+  +L  DPS RP
Sbjct: 189 CVLYELASLKRAF--EAANLPALVLKIMSGTFAPISDRYSPDLRQLILSMLNLDPSKRP 245

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with a rare form of juvenile renal cystic disease, nephronophthisis type 9. It has been suggested that a defect in the ciliary localization of Nek8 contributes to the development of cysts manifested by these diseases. Length = 256

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score = 60.7 bits (148), Expect = 3e-10
 Identities = 46/167 (27%), Positives = 71/167 (42%), Gaps = 28/167 (16%)

Query: 346 FTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSY---TNKSGLSMQ 402
             +++  + +L+ +   HRDLK DNIL+D +       L +TDFG S      +      
Sbjct: 99  IAEIVLALEYLHSNGIIHRDLKPDNILIDSNG-----HLKLTDFGLSKVGLVRRQINLND 153

Query: 403 YSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEI------FGHDNP 455
               D  + G    +APEV L          +SK+ D W+ G + YE       F  + P
Sbjct: 154 DEKEDKRIVGTPDYIAPEVILGQ-------GHSKTVDWWSLGCILYEFLVGIPPFHGETP 206

Query: 456 --FYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
              +Q+  N   E    P+    V +    L++KLL  DP  R  A+
Sbjct: 207 EEIFQNILNGKIE---WPED-VEVSDEAIDLISKLLVPDPEKRLGAK 249

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score = 61.1 bits (149), Expect = 3e-10
 Identities = 44/147 (29%), Positives = 64/147 (43%), Gaps = 26/147 (17%)

Query: 309 YGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVL--LFTQLLEGVTHLNMHRTAHRDL 366
             R + L ++ +  + DL  YL  +C +  +    +  L  QLL GV  L+ HR  HRDL
Sbjct: 75  TDRELKLTLVFEHVDQDLATYL-SKCPKPGLPPETIKDLMRQLLRGVDFLHSHRIVHRDL 133

Query: 367 KSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALM---APEVAL 423
           K  NIL+         Q+ I DF        GL+  YS  ++ L   V  +   APEV L
Sbjct: 134 KPQNILVTSDG-----QVKIADF--------GLARIYSF-EMALTSVVVTLWYRAPEVLL 179

Query: 424 ATPGLFSFVNYSKSDAWTAGTVAYEIF 450
            +            D W+ G +  E+F
Sbjct: 180 QSSYATPV------DMWSVGCIFAELF 200

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|173735 cd07831, STKc_MOK, Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

 Score = 59.2 bits (144), Expect = 1e-09
 Identities = 75/309 (24%), Positives = 114/309 (36%), Gaps = 96/309 (31%)

Query: 235 NSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLI 294
             +AI K M K    L +   L E   +     L PHPN++ +     + +       L 
Sbjct: 25  KYYAI-KCMKKHFKSLEQVNNLREIQALRR---LSPHPNILRLI----EVLFDRKTGRL- 75

Query: 295 YPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLF-TQLLEGV 353
              AL   L        +M+L+ L+K      +  L E        +RV  +  QLL+ +
Sbjct: 76  ---ALVFEL-------MDMNLYELIK----GRKRPLPE--------KRVKSYMYQLLKSL 113

Query: 354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSS--------YTNKSGLSMQYSS 405
            H++ +   HRD+K +NIL+    D+    L + DFGS         YT       +Y S
Sbjct: 114 DHMHRNGIFHRDIKPENILIK---DDI---LKLADFGSCRGIYSKPPYT-------EYIS 160

Query: 406 ADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-------------- 451
                       APE  L T G +      K D W  G V +EI                
Sbjct: 161 TR-------WYRAPECLL-TDGYYGP----KMDIWAVGCVFFEILSLFPLFPGTNELDQI 208

Query: 452 ---HD---------NPFYQSARNTDYEVNA-----LPQLNTNVPEVMRRLVAKLLENDPS 494
              HD            ++ +R+ +Y   +     L +L  N       L+ KLL  DP 
Sbjct: 209 AKIHDVLGTPDAEVLKKFRKSRHMNYNFPSKKGTGLRKLLPNASAEGLDLLKKLLAYDPD 268

Query: 495 DRPSAELAA 503
           +R +A+ A 
Sbjct: 269 ERITAKQAL 277

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. Length = 282

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 53/190 (27%), Positives = 86/190 (45%), Gaps = 31/190 (16%)

Query: 318 LMKKYNTDLRNYLRERCAQ-LSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCS 376
           LM+K +  L  +LR    Q L +   + +  Q+ EG+ +L    + HRDL + NIL+   
Sbjct: 83  LMEKGS--LLAFLRSPEGQVLPVASLIDMACQVAEGMAYLEEQNSIHRDLAARNILVG-- 138

Query: 377 EDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSK 436
           ED  C    + DFG +   K  +   Y S+D ++       APE   A+ G FS    +K
Sbjct: 139 EDLVCK---VADFGLARLIKEDV---YLSSDKKI--PYKWTAPEA--ASHGTFS----TK 184

Query: 437 SDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTN--------VPEVMRRLVAKL 488
           SD W+ G + YE+F +    Y    N +       Q+            P+ + +++ + 
Sbjct: 185 SDVWSFGILLYEMFTYGQVPYPGMNNHE----VYDQITAGYRMPCPAKCPQEIYKIMLEC 240

Query: 489 LENDPSDRPS 498
              +P DRPS
Sbjct: 241 WAAEPEDRPS 250

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 55/192 (28%), Positives = 85/192 (44%), Gaps = 33/192 (17%)

Query: 326 LRNYLRERCAQLSMHERVLLFT-QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           LR+YL+    Q++  +R+LLF+ Q+ +G+ +L   R  HRDL + NIL++ SED     +
Sbjct: 95  LRDYLQRHRDQIN-LKRLLLFSSQICKGMDYLGSQRYIHRDLAARNILVE-SEDL----V 148

Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGT 444
            I+DFG +          Y     E    +   APE  L T     F   S SD W+ G 
Sbjct: 149 KISDFGLAKVLPEDKDYYYVKEPGES--PIFWYAPE-CLRT---SKF--SSASDVWSFGV 200

Query: 445 VAYEIFGHDNPFY----QSARNTDYE---------VNAL---PQLN--TNVPEVMRRLVA 486
             YE+F + +P      +  R              +  L    +L    + P+ +  L+ 
Sbjct: 201 TLYELFTYGDPSQSPPAEFLRMIGIAQGQMIVTRLLELLKEGERLPRPPSCPDEVYDLMK 260

Query: 487 KLLENDPSDRPS 498
              E +P DRPS
Sbjct: 261 LCWEAEPQDRPS 272

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

 Score = 57.7 bits (140), Expect = 4e-09
 Identities = 76/326 (23%), Positives = 119/326 (36%), Gaps = 71/326 (21%)

Query: 187 LPDVDDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMS 244
           LPD         ++ + I +GT   VY+A  +  G   A+K+M             + + 
Sbjct: 1   LPD----PTGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIM------DIIEDEEEEIK 50

Query: 245 KELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLN 304
           +E   LRK                  HPN+   + AF    P   D  L     L     
Sbjct: 51  EEYNILRK---------------YSNHPNIATFYGAFIKKNPPGNDDQLWLVMELCG--- 92

Query: 305 PTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHR 364
             GG     S+        TDL   LR++  +L       +  + L G+ +L+ ++  HR
Sbjct: 93  --GG-----SV--------TDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLHENKVIHR 137

Query: 365 DLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALA 424
           D+K  NILL     N   +LV  DFG S    S L  + +       G    MAPEV   
Sbjct: 138 DIKGQNILLT---KNAEVKLV--DFGVSAQLDSTLGRRNTFI-----GTPYWMAPEVIAC 187

Query: 425 TPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRR- 483
                +  +  +SD W+ G  A E+     P         + + AL ++  N P  ++  
Sbjct: 188 DEQPDASYDA-RSDVWSLGITAIELADGKPPLCDM-----HPMRALFKIPRNPPPTLKSP 241

Query: 484 ---------LVAKLLENDPSDRPSAE 500
                     +++ L  +   RP  E
Sbjct: 242 ENWSKKFNDFISECLIKNYEQRPFME 267

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin III may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. It may also function as a cargo carrier during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. The Drosophila class III myosin, called NinaC (Neither inactivation nor afterpotential protein C), is critical in normal adaptation and termination of photoresponse. Vertebrates contain two isoforms of class III myosin, IIIA and IIIB. This subfamily also includes mammalian NIK-like embryo-specific kinase (NESK), Traf2- and Nck-interacting kinase (TNIK), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Length = 275

>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

 Score = 57.5 bits (139), Expect = 4e-09
 Identities = 62/198 (31%), Positives = 89/198 (44%), Gaps = 29/198 (14%)

Query: 312 NMSLFILMKKYNT-DLRNYLRERCAQLSMHERVL-LFTQLLEGVTHLNMHRTAHRDLKSD 369
           + +L I M+  N   L + +  +  QL   E VL    Q++  V++++     HRD+K+ 
Sbjct: 71  DNTLLIEMEYANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIHKAGILHRDIKTL 130

Query: 370 NILLDCSEDNTCPQLV-ITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGL 428
           NI L      T   L+ + DFG S      L  +YS A+  +G     M+PE       L
Sbjct: 131 NIFL------TKAGLIKLGDFGISKI----LGSEYSMAETVVG-TPYYMSPE-------L 172

Query: 429 FSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLN-TNVPEV----MR 482
              V Y+ KSD W  G V YE+      F   A N    V  + Q N T V  V    + 
Sbjct: 173 CQGVKYNFKSDIWALGCVLYELLTLKRTF--DATNPLNLVVKIVQGNYTPVVSVYSSELI 230

Query: 483 RLVAKLLENDPSDRPSAE 500
            LV  LL+ DP  RP+A+
Sbjct: 231 SLVHSLLQQDPEKRPTAD 248

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associates with FACT (FAcilitates Chromatin Transcription) and modulates interphase progression. It also interacts with Nek6, and Nek7, during mitosis, resulting in their activation. Length = 256

>gnl|CDD|173762 cd08222, STKc_Nek11, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

 Score = 57.3 bits (138), Expect = 4e-09
 Identities = 52/160 (32%), Positives = 69/160 (43%), Gaps = 26/160 (16%)

Query: 346 FTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSS 405
           F QLL GV +++  R  HRDLK+ NI L   ++N    L I DFG S      L M    
Sbjct: 112 FIQLLLGVHYMHQRRILHRDLKAKNIFL---KNNL---LKIGDFGVSR-----LLMGSCD 160

Query: 406 ADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEI------FGHDNPFYQS 459
                 G    M+PE AL   G       SKSD W+ G + YE+      F   N     
Sbjct: 161 LATTFTGTPYYMSPE-ALKHQGY-----DSKSDIWSLGCILYEMCCLAHAFEGQNFLSVV 214

Query: 460 ARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSA 499
            R  +    +LP+        +  ++  +L  DPS RPSA
Sbjct: 215 LRIVEGPTPSLPE---TYSRQLNSIMQSMLNKDPSLRPSA 251

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M checkpoint. Nek11 may also play a role in the S-phase checkpoint as well as in DNA replication and genotoxic stress responses. Length = 260

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 57.1 bits (138), Expect = 4e-09
 Identities = 54/182 (29%), Positives = 87/182 (47%), Gaps = 26/182 (14%)

Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
            L  +LR++  +L++ + + +      G+ +L      HRDL + N L+   E+N    L
Sbjct: 78  SLLTFLRKKKNRLTVKKLLQMSLDAAAGMEYLESKNCIHRDLAARNCLVG--ENN---VL 132

Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGT 444
            I+DFG S   + G+   Y+ +D      +   APE AL   G ++    S+SD W+ G 
Sbjct: 133 KISDFGMSREEEGGI---YTVSDGLKQIPIKWTAPE-ALNY-GRYT----SESDVWSYGI 183

Query: 445 VAYEIF-GHDNPF----YQSAR---NTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDR 496
           + +E F   D P+     Q  R    + Y + A PQL    PE + RL+ +    DP +R
Sbjct: 184 LLWETFSLGDTPYPGMSNQQTRERIESGYRMPA-PQL---CPEEIYRLMLQCWAYDPENR 239

Query: 497 PS 498
           PS
Sbjct: 240 PS 241

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

 Score = 57.1 bits (138), Expect = 5e-09
 Identities = 48/182 (26%), Positives = 85/182 (46%), Gaps = 22/182 (12%)

Query: 326 LRNYLRERCAQLSMHERVLLF--TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQ 383
           L   LR +   L  +E+ ++F   Q+LEG+ +L+ ++  HRD+K DN+L+     NT   
Sbjct: 92  LSALLRSKWGPLKDNEQTIIFYTKQILEGLKYLHDNQIVHRDIKGDNVLV-----NTYSG 146

Query: 384 LV-ITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTA 442
           +V I+DFG+S    +G++    +      G +  MAPEV    P  +     + +D W+ 
Sbjct: 147 VVKISDFGTS-KRLAGINPCTET----FTGTLQYMAPEVIDKGPRGYG----APADIWSL 197

Query: 443 GTVAYEIFGHDNPFY--QSARNTDYEVNAL---PQLNTNVPEVMRRLVAKLLENDPSDRP 497
           G    E+     PF      +   ++V      P++  ++    +  + +  E DP  R 
Sbjct: 198 GCTIVEMATGKPPFIELGEPQAAMFKVGMFKIHPEIPESLSAEAKNFILRCFEPDPDKRA 257

Query: 498 SA 499
           SA
Sbjct: 258 SA 259

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268

>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

 Score = 57.1 bits (138), Expect = 6e-09
 Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 36/167 (21%)

Query: 349 LLEGVTHL-NMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
           ++EG+T+L N+HR  HRD+K  NIL+     N+  Q+ + DFG S        +  S AD
Sbjct: 112 VVEGLTYLYNVHRIMHRDIKPSNILV-----NSRGQIKLCDFGVSG------ELINSIAD 160

Query: 408 IELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTDYE 466
             +G +   M+PE             Y+ KSD W+ G    E+     PF  S  + D +
Sbjct: 161 TFVGTST-YMSPERIQGG-------KYTVKSDVWSLGISIIELALGKFPFAFSNIDDDGQ 212

Query: 467 VNAL--------------PQL-NTNVPEVMRRLVAKLLENDPSDRPS 498
            + +              P+L +++ PE +R  V   L  DP++RP+
Sbjct: 213 DDPMGILDLLQQIVQEPPPRLPSSDFPEDLRDFVDACLLKDPTERPT 259

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis, and related proteins. Byr1 phosphorylates its downstream target, the MAPK Spk1, and is regulated by the MAPKKK Byr2. The Spk1 cascade is pheromone-responsive and is essential for sporulation and sexual differentiation in fission yeast. FUZ7 phosphorylates and activates its target, the MAPK Crk1, which is required in mating and virulence in U. maydis. Length = 284

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 56.9 bits (138), Expect = 7e-09
 Identities = 54/225 (24%), Positives = 78/225 (34%), Gaps = 54/225 (24%)

Query: 314 SLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
              ++M+   +DL   LR+    L   +       LL+GV +++ +   HRDLK  N+L+
Sbjct: 73  GFVLVMEYMPSDLSEVLRDEERPLPEAQVKSYMRMLLKGVAYMHANGIMHRDLKPANLLI 132

Query: 374 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVA---LMAPEVALATPGLFS 430
                     L I DFG +          YS         VA     APE+      L+ 
Sbjct: 133 SADG-----VLKIADFGLARLFSEEEPRLYSHQ-------VATRWYRAPEL------LYG 174

Query: 431 FVNYSKS-DAWTAGTVAYE------IFGHDNPFYQSAR----------NTDYEVNALPQL 473
              Y    D W  G +  E      +F  +N   Q A            T   + +LP  
Sbjct: 175 ARKYDPGVDLWAVGCIFAELLNGSPLFPGENDIEQLAIVFRTLGTPNEETWPGLTSLPDY 234

Query: 474 NT-----NVPEVMRR-----------LVAKLLENDPSDRPSAELA 502
           N      + P  +             L+  LL  DPS R SA  A
Sbjct: 235 NKITFPESKPIPLEEIFPDASPEALDLLKGLLVYDPSKRLSAAEA 279

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|223009 PHA03211, PHA03211, serine/threonine kinase US3; Provisional

 Score = 57.6 bits (139), Expect = 8e-09
 Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 22/171 (12%)

Query: 293 LIYPSALPA-RLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLE 351
           L +P+ L    +   GG        +++ KY +DL  YL  R   L + +   +  QLL 
Sbjct: 217 LSHPAVLALLDVRVVGGL-----TCLVLPKYRSDLYTYLGARLRPLGLAQVTAVARQLLS 271

Query: 352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELG 411
            + +++     HRD+K++N+L++  ED     + + DFG++   +   S   +     + 
Sbjct: 272 AIDYIHGEGIIHRDIKTENVLVNGPED-----ICLGDFGAACFARGSWS---TPFHYGIA 323

Query: 412 GNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSAR 461
           G V   APEV    P       Y+ S D W+AG V +E   H    + ++R
Sbjct: 324 GTVDTNAPEVLAGDP-------YTPSVDIWSAGLVIFEAAVHTASLFSASR 367

Length = 461

>gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 52/195 (26%), Positives = 80/195 (41%), Gaps = 43/195 (22%)

Query: 325 DLRNYLRE------RCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSED 378
           DL+++LRE      R + L+M + +     + +G  +L  +   HRD+ + N LL C   
Sbjct: 95  DLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEENHFIHRDIAARNCLLTC--- 151

Query: 379 NTCPQLV--ITDFG-------SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF 429
              P  V  I DFG       +SY  K G +M            +  M PE  L   G+F
Sbjct: 152 -KGPGRVAKIADFGMARDIYRASYYRKGGRAML----------PIKWMPPEAFL--DGIF 198

Query: 430 SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLN------TNVPEVMRR 483
           +    SK+D W+ G + +EIF      Y    N   EV                P  + R
Sbjct: 199 T----SKTDVWSFGVLLWEIFSLGYMPYPGRTNQ--EVMEFVTGGGRLDPPKGCPGPVYR 252

Query: 484 LVAKLLENDPSDRPS 498
           ++    ++ P DRP+
Sbjct: 253 IMTDCWQHTPEDRPN 267

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well as visceral muscle differentiation in Drosophila. ALK is aberrantly expressed as fusion proteins, due to chromosomal translocations, in about 60% of anaplastic large cell lymphomas (ALCLs). ALK fusion proteins are also found in rare cases of diffuse large B cell lymphomas (DLBCLs). LTK is mainly expressed in B lymphocytes and neuronal tissues. It is important in cell proliferation and survival. Transgenic mice expressing TLK display retarded growth and high mortality rate. In addition, a polymorphism in mouse and human LTK is implicated in the pathogenesis of systemic lupus erythematosus. Length = 277

>gnl|CDD|173696 cd05605, STKc_GRK4_like, Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

 Score = 56.4 bits (136), Expect = 1e-08
 Identities = 44/167 (26%), Positives = 65/167 (38%), Gaps = 32/167 (19%)

Query: 341 ERVLLFT-QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGL 399
           ER + +  ++  G+  L+  R  +RDLK +NILLD             D+G    +  GL
Sbjct: 102 ERAVFYAAEITCGLEDLHRERIVYRDLKPENILLD-------------DYGHIRISDLGL 148

Query: 400 SMQYSSADIELG--GNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFY 457
           +++    +   G  G V  MAPEV       FS       D W  G + YE+    +PF 
Sbjct: 149 AVEIPEGETIRGRVGTVGYMAPEVVKNERYTFS------PDWWGLGCLIYEMIEGKSPFR 202

Query: 458 QSARNTDYEVNALPQLNTNVPEV--------MRRLVAKLLENDPSDR 496
           Q       E   + +      E          R +  +LL  DP  R
Sbjct: 203 QRKEKVKRE--EVERRVKEDQEEYSEKFSEAARSICRQLLTKDPGFR 247

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, GRK6, and similar GRKs. GRKs in this group contain an N-terminal RGS homology (RH) domain and a catalytic domain, but lack a G protein betagamma-subunit binding domain. They are localized to the plasma membrane through post-translational lipid modification or direct binding to PIP2. Length = 285

>gnl|CDD|173666 cd05575, STKc_SGK, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 43/137 (31%), Positives = 61/137 (44%), Gaps = 20/137 (14%)

Query: 363 HRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVA 422
           +RDLK +NILLD         +V+TDFG     K G  +++S       G    +APEV 
Sbjct: 119 YRDLKPENILLDSQG-----HVVLTDFGLC---KEG--IEHSKTTSTFCGTPEYLAPEVL 168

Query: 423 LATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPE 479
              P       Y ++ D W  G V YE+     PFY       Y+  +N   +L  N+  
Sbjct: 169 RKQP-------YDRTVDWWCLGAVLYEMLYGLPPFYSRDTAEMYDNILNKPLRLKPNISV 221

Query: 480 VMRRLVAKLLENDPSDR 496
             R L+  LL+ D + R
Sbjct: 222 SARHLLEGLLQKDRTKR 238

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell proliferation, and apoptosis. Length = 323

>gnl|CDD|165473 PHA03207, PHA03207, serine/threonine kinase US3; Provisional

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 56/224 (25%), Positives = 96/224 (42%), Gaps = 56/224 (25%)

Query: 317 ILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCS 376
           ++M KY  DL  Y+ +R   L + + + +  +LLE + +L+     HRD+K++NI LD  
Sbjct: 163 MVMPKYKCDLFTYV-DRSGPLPLEQAITIQRRLLEALAYLHGRGIIHRDVKTENIFLDEP 221

Query: 377 EDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY-S 435
           E+      V+ DFG++   K       +       G +   +PE+    P       Y +
Sbjct: 222 EN-----AVLGDFGAAC--KLDAHP-DTPQCYGWSGTLETNSPELLALDP-------YCA 266

Query: 436 KSDAWTAGTVAYEIFGHDNPFYQSARNTD----------YEVNAL--PQ-LNTN------ 476
           K+D W+AG V +E+   +   +     +            +V+ L  PQ  +TN      
Sbjct: 267 KTDIWSAGLVLFEMSVKNVTLFGKQVKSSSSQLRSIIRCMQVHPLEFPQNGSTNLCKHFK 326

Query: 477 -----------VPEVMRR---------LVAKLLENDPSDRPSAE 500
                      +P V+R+         L+AK+L  D   RPSA+
Sbjct: 327 QYAIVLRPPYTIPPVIRKYGMHMDVEYLIAKMLTFDQEFRPSAQ 370

Length = 392

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 73/343 (21%), Positives = 109/343 (31%), Gaps = 112/343 (32%)

Query: 202 KFIAKGTNAVVYEATFR--GVEYALKMM--FNYSAASNSHAILKAMSKELLPLRKPLRLN 257
             I +GT  VVY+A  +  G   A+K +     S      A+     +E+  L+    LN
Sbjct: 5   GKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTAL-----REIKLLK---ELN 56

Query: 258 EDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSL-F 316
                        HPN++ +   F                              ++ L F
Sbjct: 57  -------------HPNIIKLLDVFRH--------------------------KGDLYLVF 77

Query: 317 ILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCS 376
             M    TDL   +++R   L          QLL+G+   + H   HRDLK +N+L++  
Sbjct: 78  EFMD---TDLYKLIKDRQRGLPESLIKSYLYQLLQGLAFCHSHGILHRDLKPENLLINTE 134

Query: 377 EDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVAL----ATPGLFSFV 432
                  L + DFG + +                G  V      V      A   L    
Sbjct: 135 G-----VLKLADFGLARS---------------FGSPVRPYTHYVVTRWYRAPELLLGDK 174

Query: 433 NYSKS-DAWTAGTVAYE----------------------IFGHDNP-----FYQSARNT- 463
            YS   D W+ G +  E                        G  +P     F   ARN  
Sbjct: 175 GYSTPVDIWSVGCIFAELLSRRPLFPGKSEIDQLFKIFRTLGTPDPEVWPKFTSLARNYK 234

Query: 464 ----DYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA 502
                     LP+L  N       L++++L  DP  R +AE A
Sbjct: 235 FSFPKKAGMPLPKLFPNASPQALDLLSQMLHYDPHKRITAEQA 277

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|140293 PTZ00267, PTZ00267, NIMA-related protein kinase; Provisional

 Score = 56.2 bits (135), Expect = 3e-08
 Identities = 51/189 (26%), Positives = 79/189 (41%), Gaps = 34/189 (17%)

Query: 323 NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 382
           N  ++  L+E       +E  LLF Q++  +  ++  +  HRDLKS NI L        P
Sbjct: 153 NKQIKQRLKEHLP-FQEYEVGLLFYQIVLALDEVHSRKMMHRDLKSANIFL-------MP 204

Query: 383 QLVIT--DFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS-KSDA 439
             +I   DFG S      +S+  +S+     G    +APE       L+    YS K+D 
Sbjct: 205 TGIIKLGDFGFSKQYSDSVSLDVASS---FCGTPYYLAPE-------LWERKRYSKKADM 254

Query: 440 WTAGTVAYEIFGHDNPF--------YQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLEN 491
           W+ G + YE+     PF         Q      Y+    P     V   M+ L+  LL  
Sbjct: 255 WSLGVILYELLTLHRPFKGPSQREIMQQVLYGKYDPFPCP-----VSSGMKALLDPLLSK 309

Query: 492 DPSDRPSAE 500
           +P+ RP+ +
Sbjct: 310 NPALRPTTQ 318

Length = 478

>gnl|CDD|173693 cd05602, STKc_SGK1, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

 Score = 55.0 bits (132), Expect = 3e-08
 Identities = 82/308 (26%), Positives = 127/308 (41%), Gaps = 75/308 (24%)

Query: 202 KFIAKGTNAVVYEATFRGVE--YALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNED 259
           K I KG+   V  A  +  E  YA+K++          AILK   KE     K +    +
Sbjct: 1   KVIGKGSFGKVLLARHKAEEKFYAVKVL-------QKKAILK--KKE----EKHIMSERN 47

Query: 260 MLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILM 319
           +L+ +V+    HP +V +HF+F         +  +Y                    F+L 
Sbjct: 48  VLLKNVK----HPFLVGLHFSFQT-------ADKLY--------------------FVLD 76

Query: 320 KKYNTDLRNYL-RERCAQLSMHERVLLFT-QLLEGVTHLNMHRTAHRDLKSDNILLDCSE 377
                +L  +L RERC    +  R   +  ++   + +L+     +RDLK +NILLD   
Sbjct: 77  YINGGELFYHLQRERCF---LEPRARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQG 133

Query: 378 DNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS 437
                 +V+TDFG    N     ++++       G    +APEV    P       Y ++
Sbjct: 134 -----HIVLTDFGLCKEN-----IEHNGTTSTFCGTPEYLAPEVLHKQP-------YDRT 176

Query: 438 -DAWTAGTVAYEIFGHDNPFYQSARNT----DYEVNALPQLNTNVPEVMRRLVAKLLEND 492
            D W  G V YE+     PFY  +RNT    D  +N   QL  N+    R L+  LL+ D
Sbjct: 177 VDWWCLGAVLYEMLYGLPPFY--SRNTAEMYDNILNKPLQLKPNITNSARHLLEGLLQKD 234

Query: 493 PSDRPSAE 500
            + R  A+
Sbjct: 235 RTKRLGAK 242

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt sensitivity, memory consolidation, and cardiac repolarization. A common SGK1 variant is associated with increased blood pressure and body weight. SGK1 may also contribute to tumor growth, neurodegeneration, fibrosing disease, and ischemia. Length = 325

>gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

 Score = 54.2 bits (131), Expect = 6e-08
 Identities = 43/147 (29%), Positives = 62/147 (42%), Gaps = 28/147 (19%)

Query: 310 GRNM-SLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKS 368
           G N+  ++++M+    DL++ +          E   L  QLL GV HL+ +   HRDLK+
Sbjct: 75  GSNLDKIYMVMEYVEHDLKSLMETMKQPFLQSEVKCLMLQLLSGVAHLHDNWILHRDLKT 134

Query: 369 DNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALM---APEVALAT 425
            N+LL     N    L I DF        GL+ +Y S        V  +   APE+ L  
Sbjct: 135 SNLLL-----NNRGILKICDF--------GLAREYGSPLKPYTQLVVTLWYRAPELLLGA 181

Query: 426 PGLFSFVNYSKS-DAWTAGTVAYEIFG 451
                   YS + D W+ G     IF 
Sbjct: 182 K------EYSTAIDMWSVGC----IFA 198

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the major isoform, associates with cyclin L and is expressed throughout the cell cycle. It is involved in RNA processing and the regulation of transcription. CDK11(p58) associates with cyclin D3 and is expressed during the G2/M phase of the cell cycle. It plays roles in spindle morphogenesis, centrosome maturation, sister chromatid cohesion, and the completion of mitosis. CDK11(p46) is formed from the larger isoforms by caspases during TNFalpha- and Fas-induced apoptosis. It functions as a downstream effector kinase in apoptotic signaling pathways and interacts with eukaryotic initiation factor 3f (eIF3f), p21-activated kinase (PAK1), and Ran-binding protein (RanBPM). Length = 293

>gnl|CDD|173665 cd05574, STKc_phototropin_like, Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

 Score = 54.6 bits (132), Expect = 6e-08
 Identities = 45/167 (26%), Positives = 67/167 (40%), Gaps = 33/167 (19%)

Query: 355 HLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSY-TNKSGLSMQYSSADIELGGN 413
           +L++    +RDLK +NILL   E      ++++DF  S  ++     +  +        +
Sbjct: 118 YLHLLGIVYRDLKPENILL--HESG---HIMLSDFDLSKQSDVEPPPVSKALRKGSRRSS 172

Query: 414 VALMAPEVALATPGLF--SFV---NY------------SKSDAWTAGTVAYEI-FGHDNP 455
           V  +  E     P     SFV    Y            S  D WT G + YE+ +G   P
Sbjct: 173 VNSIPSETFSEEPSFRSNSFVGTEEYIAPEVISGDGHGSAVDWWTLGILLYEMLYGT-TP 231

Query: 456 FYQSARNTDY------EVNALPQLNTNVPEVMRRLVAKLLENDPSDR 496
           F  S R+  +      EV   P  +  V    R L+ KLL  DPS R
Sbjct: 232 FKGSNRDETFSNILKKEVT-FPG-SPPVSSSARDLIRKLLVKDPSKR 276

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-terminal photosensory domain and a C-terminal catalytic domain. The N-terminal domain contains two LOV (Light, Oxygen or Voltage) domains that binds FMN. Photoexcitation of the LOV domains results in autophosphorylation at multiple sites and activation of the catalytic domain. Neurospora crassa nrc-2 plays a role in growth and development by controlling entry into the conidiation program. Length = 316

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 53.8 bits (130), Expect = 6e-08
 Identities = 52/208 (25%), Positives = 88/208 (42%), Gaps = 38/208 (18%)

Query: 307 GGYGRNMSLFILMKKY--NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHR 364
           G Y +N  L+I+M+ Y     + + ++     L+  E   +  Q L+G+ +L+ ++  HR
Sbjct: 65  GSYFKNTDLWIVME-YCGAGSVSDIMKITNKTLTEEEIAAILYQTLKGLEYLHSNKKIHR 123

Query: 365 DLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIE-LGGNVALMAPEVAL 423
           D+K+ NILL+  E+       + DFG S        +  + A    + G    MAPEV  
Sbjct: 124 DIKAGNILLN--EEGQAK---LADFGVSG------QLTDTMAKRNTVIGTPFWMAPEVIQ 172

Query: 424 ATPGLFSFVNY-SKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMR 482
                   + Y +K+D W+ G  A E+     P+        + + A+  +    P  + 
Sbjct: 173 E-------IGYNNKADIWSLGITAIEMAEGKPPYS-----DIHPMRAIFMIPNKPPPTLS 220

Query: 483 ----------RLVAKLLENDPSDRPSAE 500
                       V K L  DP +RPSA 
Sbjct: 221 DPEKWSPEFNDFVKKCLVKDPEERPSAI 248

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|132966 cd06635, STKc_TAO1, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

 Score = 54.3 bits (130), Expect = 7e-08
 Identities = 59/198 (29%), Positives = 84/198 (42%), Gaps = 45/198 (22%)

Query: 329 YLRERCAQLSM-------------HERVLLFTQL-------LEGVTHLNMHRTAHRDLKS 368
           YLRE  A L M             H++ L   ++       L+G+ +L+ H   HRD+K+
Sbjct: 94  YLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHNMIHRDIKA 153

Query: 369 DNILLDCSEDNTCP-QLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALAT-P 426
            NILL      T P Q+ + DFGS+           +S      G    MAPEV LA   
Sbjct: 154 GNILL------TEPGQVKLADFGSA---------SIASPANSFVGTPYWMAPEVILAMDE 198

Query: 427 GLFSFVNYSKSDAWTAGTVAYEIFGHDNP-FYQSARNTDYEV--NALPQLNTNV-PEVMR 482
           G +      K D W+ G    E+     P F  +A +  Y +  N  P L +N   +  R
Sbjct: 199 GQYD----GKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPTLQSNEWSDYFR 254

Query: 483 RLVAKLLENDPSDRPSAE 500
             V   L+  P DRP++E
Sbjct: 255 NFVDSCLQKIPQDRPTSE 272

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuronal apoptosis. TAO1 interacts with the checkpoint proteins BubR1 and Mad2, and plays an important role in regulating mitotic progression, which is required for both chromosome congression and checkpoint-induced anaphase delay. TAO1 may play a role in protecting genomic stability. Length = 317

>gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

 Score = 53.9 bits (130), Expect = 7e-08
 Identities = 56/206 (27%), Positives = 81/206 (39%), Gaps = 52/206 (25%)

Query: 323 NTDLRNYLRER--------CAQLSMHERVLLF--TQLLEGVTHLNMHRTAHRDLKSDNIL 372
           N DL  +L++         C   S+    LL+  TQ+  G+ +L      HRDL + N L
Sbjct: 103 NGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLESLNFVHRDLATRNCL 162

Query: 373 LDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVAL----MAPEVALATPGL 428
           +  +       + I DFG S          YSS    + G   L    MA E  L   G 
Sbjct: 163 VGKNY-----TIKIADFGMS-------RNLYSSDYYRVQGRAPLPIRWMAWESVLL--GK 208

Query: 429 FSFVNYSKSDAWTAGTVAYEI--FGHDNPFYQSARNTDYEV--NA------------LPQ 472
           F+    +KSD W  G   +EI     + P+      TD +V  NA            LP+
Sbjct: 209 FT----TKSDVWAFGVTLWEILTLCREQPYEHL---TDQQVIENAGHFFRDDGRQIYLPR 261

Query: 473 LNTNVPEVMRRLVAKLLENDPSDRPS 498
              N P+ +  L+ +    D  DRP+
Sbjct: 262 -PPNCPKDIYELMLECWRRDEEDRPT 286

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 296

>gnl|CDD|173719 cd05630, STKc_GRK6, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

 Score = 53.9 bits (129), Expect = 8e-08
 Identities = 45/155 (29%), Positives = 59/155 (38%), Gaps = 31/155 (20%)

Query: 352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELG 411
           G+  L+  R  +RDLK +NILLD             D G    +  GL++         G
Sbjct: 114 GLEDLHQERIVYRDLKPENILLD-------------DHGHIRISDLGLAVHVPEGQTIKG 160

Query: 412 --GNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNA 469
             G V  MAPEV       FS       D W  G + YE+    +PF Q  +    E   
Sbjct: 161 RVGTVGYMAPEVVKNERYTFS------PDWWALGCLLYEMIAGQSPFQQRKKKIKRE--E 212

Query: 470 LPQLNTNVPE--------VMRRLVAKLLENDPSDR 496
           + +L   V E          R L   LL  DP +R
Sbjct: 213 VERLVKEVQEEYSEKFSPDARSLCKMLLCKDPKER 247

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK6 plays important roles in the regulation of dopamine, M3 muscarinic, opioid, and chemokine receptor signaling. It also plays maladaptive roles in addiction and Parkinson's disease. GRK6-deficient mice exhibit altered dopamine receptor regulation, decreased lymphocyte chemotaxis, and increased acute inflammation and neutrophil chemotaxis. Length = 285

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 53.7 bits (130), Expect = 8e-08
 Identities = 37/157 (23%), Positives = 62/157 (39%), Gaps = 42/157 (26%)

Query: 314 SLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
           S++++ +  + DL   L     + +  +      QLLEG+ +L+ +   HRD+K  NIL+
Sbjct: 74  SIYMVFEYMDHDLTGLLDSPEVKFTESQIKCYMKQLLEGLQYLHSNGILHRDIKGSNILI 133

Query: 374 DCSEDNTCPQLVITDFG----------SSYTNKSGLSMQYSSADIELGGNVAL--MAPEV 421
           +         L + DFG          + YTN+                 + L    PE+
Sbjct: 134 NNDG-----VLKLADFGLARPYTKRNSADYTNRV----------------ITLWYRPPEL 172

Query: 422 AL-ATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPF 456
            L AT        Y  + D W+ G +  E+F     F
Sbjct: 173 LLGAT-------RYGPEVDMWSVGCILAELFLGKPIF 202

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 53.2 bits (128), Expect = 9e-08
 Identities = 46/151 (30%), Positives = 72/151 (47%), Gaps = 29/151 (19%)

Query: 309 YG---RNMSLFILMK-KYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHR 364
           YG   +   +FI+ +   N  L NYLRER  +L     + + + + E + +L  +   HR
Sbjct: 65  YGVCTKQRPIFIVTEYMANGCLLNYLRERKGKLGTEWLLDMCSDVCEAMEYLESNGFIHR 124

Query: 365 DLKSDNILLDCSEDNTCPQLVITDFG-SSYTNKSGLSMQYSSADIELGGN---VALMAPE 420
           DL + N L+   EDN    + ++DFG + Y     L  QY+S+     G    V    PE
Sbjct: 125 DLAARNCLV--GEDNV---VKVSDFGLARYV----LDDQYTSS----QGTKFPVKWAPPE 171

Query: 421 VALATPGLFSFVNY-SKSDAWTAGTVAYEIF 450
           V       F +  + SKSD W+ G + +E+F
Sbjct: 172 V-------FDYSRFSSKSDVWSFGVLMWEVF 195

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 53.0 bits (127), Expect = 1e-07
 Identities = 52/185 (28%), Positives = 88/185 (47%), Gaps = 29/185 (15%)

Query: 326 LRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLV 385
           L +YLR +  + S    + +   + EG+ +L      HRDL + N L+   E+     + 
Sbjct: 86  LSDYLRAQRGKFSQETLLGMCLDVCEGMAYLESSNVIHRDLAARNCLV--GENQV---VK 140

Query: 386 ITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGT 444
           ++DFG +   +  L  QY+S+    G         V  ++P +FSF  YS KSD W+ G 
Sbjct: 141 VSDFGMT---RFVLDDQYTSST---GTKFP-----VKWSSPEVFSFSKYSSKSDVWSFGV 189

Query: 445 VAYEIFGHDNPFYQSARNTDY--EVNA-----LPQL-NTNVPEVMRRLVAKLLENDPSDR 496
           + +E+F      Y++  N++    +NA      P+L + +V E+M+       +  P DR
Sbjct: 190 LMWEVFSEGKTPYENRSNSEVVETINAGFRLYKPRLASQSVYELMQH----CWKERPEDR 245

Query: 497 PSAEL 501
           PS  L
Sbjct: 246 PSFSL 250

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|132965 cd06634, STKc_TAO2, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

 Score = 53.5 bits (128), Expect = 1e-07
 Identities = 49/158 (31%), Positives = 69/158 (43%), Gaps = 25/158 (15%)

Query: 350 LEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLV-ITDFGSSYTNKSGLSMQYSSADI 408
           L+G+ +L+ H   HRD+K+ NILL      + P LV + DFGS+                
Sbjct: 125 LQGLAYLHSHNMIHRDVKAGNILL------SEPGLVKLGDFGSASIMAPANXFV------ 172

Query: 409 ELGGNVALMAPEVALAT-PGLFSFVNYSKSDAWTAGTVAYEIFGHDNP-FYQSARNTDYE 466
              G    MAPEV LA   G +      K D W+ G    E+     P F  +A +  Y 
Sbjct: 173 ---GTPYWMAPEVILAMDEGQYD----GKVDVWSLGITCIELAERKPPLFNMNAMSALYH 225

Query: 467 V--NALPQLNTNV-PEVMRRLVAKLLENDPSDRPSAEL 501
           +  N  P L +    E  R  V   L+  P DRP++E+
Sbjct: 226 IAQNESPALQSGHWSEYFRNFVDSCLQKIPQDRPTSEV 263

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. TAO2 contains a long C-terminal extension with autoinhibitory segments. It is activated by the release of this inhibition and the phosphorylation of its activation loop serine. TAO2 functions as a regulator of actin cytoskeletal and microtubule organization. In addition, it regulates the transforming growth factor-activated kinase 1 (TAK1), which is a MAPKKK that plays an essential role in the signaling pathways of tumor necrosis factor (TNF), interleukin 1 (IL-1), and Toll-like receptor (TLR). Length = 308

>gnl|CDD|173759 cd08219, STKc_Nek3, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

 Score = 53.1 bits (127), Expect = 1e-07
 Identities = 51/192 (26%), Positives = 89/192 (46%), Gaps = 25/192 (13%)

Query: 315 LFILMKKYNT-DLRNYLRERCAQLSMHERVL-LFTQLLEGVTHLNMHRTAHRDLKSDNIL 372
           L+I+M+  +  DL   ++ +  +L   + +L  F Q+  GV H++  R  HRD+KS NI 
Sbjct: 73  LYIVMEYCDGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIHEKRVLHRDIKSKNIF 132

Query: 373 LDCSEDNTCPQLVITDFGSS--YTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFS 430
           L         ++ + DFGS+   T+    +  Y        G    + PE+    P    
Sbjct: 133 L----TQNG-KVKLGDFGSARLLTSPGAYACTYV-------GTPYYVPPEIWENMP---- 176

Query: 431 FVNYSKSDAWTAGTVAYEIFGHDNPFY-QSARNTDYEV--NALPQLNTNVPEVMRRLVAK 487
               +KSD W+ G + YE+    +PF   S +N   +V   +   L ++    +R L+ +
Sbjct: 177 --YNNKSDIWSLGCILYELCTLKHPFQANSWKNLILKVCQGSYKPLPSHYSYELRSLIKQ 234

Query: 488 LLENDPSDRPSA 499
           + + +P  RPSA
Sbjct: 235 MFKRNPRSRPSA 246

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activation of Vav2 and contributes to prolactin-mediated motility of breast cancer cells. Length = 255

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 45/164 (27%), Positives = 68/164 (41%), Gaps = 31/164 (18%)

Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
           Q+LEGV +L+ +   HRD+K  NIL D S  N    + + DFG+S   ++  S       
Sbjct: 112 QILEGVEYLHSNMIVHRDIKGANILRD-SAGN----VKLGDFGASKRLQTICSSGTGMKS 166

Query: 408 IELGGNVALMAPEVALA-TPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE 466
           +   G    M+PEV      G        K+D W+ G    E+     P+       ++E
Sbjct: 167 VT--GTPYWMSPEVISGEGYG-------RKADVWSVGCTVVEMLTEKPPW------AEFE 211

Query: 467 VNAL----------PQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
             A           PQL ++V    R  + +    +   RPSAE
Sbjct: 212 AMAAIFKIATQPTNPQLPSHVSPDARNFLRRTFVENAKKRPSAE 255

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine Kinase, C-ros

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 51/192 (26%), Positives = 82/192 (42%), Gaps = 35/192 (18%)

Query: 325 DLRNYLRERCAQ------LSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSED 378
           DL +YLR+   +      L++ E + +   + +G  +L      HRDL + N L+   + 
Sbjct: 85  DLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQMHFIHRDLAARNCLVS-EKG 143

Query: 379 NTCPQLV-ITDFG-------SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFS 430
               ++V I DFG       S Y  K G  +            V  MAPE  L   G F+
Sbjct: 144 YDADRVVKIGDFGLARDIYKSDYYRKEGEGLL----------PVRWMAPESLL--DGKFT 191

Query: 431 FVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD--YEVNALPQLNT--NVPEVMRRLVA 486
               ++SD W+ G + +EI       Y +  N +    V A  +L    N P+ + +L+ 
Sbjct: 192 ----TQSDVWSFGVLMWEILTLGQQPYPALNNQEVLQHVTAGGRLQKPENCPDKIYQLMT 247

Query: 487 KLLENDPSDRPS 498
                DPS+RP+
Sbjct: 248 NCWAQDPSERPT 259

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male mice bearing inactive mutations of c-ros lack the initial segment of the epididymis and are infertile. The Drosophila protein, Sevenless, is required for the specification of the R7 photoreceptor cell during eye development. Length = 269

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 51/199 (25%), Positives = 82/199 (41%), Gaps = 48/199 (24%)

Query: 314 SLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
           SL  L+KKY +       E    + ++ R     Q+L G+ +L+   T HRD+K  NIL+
Sbjct: 88  SLAKLLKKYGS-----FPE--PVIRLYTR-----QILLGLEYLHDRNTVHRDIKGANILV 135

Query: 374 DCSEDNTCPQLVITDFGSS---YTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFS 430
           D    N   +L   DFG +          S +         G+   MAPEV     G + 
Sbjct: 136 D---TNGVVKL--ADFGMAKQVVEFSFAKSFK---------GSPYWMAPEVIAQQ-GGYG 180

Query: 431 FVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTN-----VPEVM---- 481
                 +D W+ G    E+     P+ Q        V A+ ++  +     +P+ +    
Sbjct: 181 L----AADIWSLGCTVLEMATGKPPWSQL-----EGVAAVFKIGRSKELPPIPDHLSDEA 231

Query: 482 RRLVAKLLENDPSDRPSAE 500
           +  + K L+ DPS RP+A 
Sbjct: 232 KDFILKCLQRDPSLRPTAA 250

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|173705 cd05614, STKc_MSK2_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

 Score = 53.4 bits (128), Expect = 1e-07
 Identities = 52/183 (28%), Positives = 79/183 (43%), Gaps = 35/183 (19%)

Query: 327 RNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVI 386
           R+   E   +    E +L        + HL+     +RD+K +NILLD SE +    +V+
Sbjct: 99  RDNFSEDEVRFYSGEIIL-------ALEHLHKLGIVYRDIKLENILLD-SEGH----VVL 146

Query: 387 TDFGSSYTNKSGLSMQYSSADIE----LGGNVALMAPEVALATPGLFSFVNYSKSDAWTA 442
           TDF        GLS ++ S + E      G +  MAPE+     G    V     D W+ 
Sbjct: 147 TDF--------GLSKEFLSEEKERTYSFCGTIEYMAPEIIRGKGGHGKAV-----DWWSL 193

Query: 443 GTVAYEIFGHDNPF-YQSARNTDYEVNAL-----PQLNTNVPEVMRRLVAKLLENDPSDR 496
           G + +E+    +PF  +  RNT  EV+       P   + +    + L+ KLL  DP  R
Sbjct: 194 GILIFELLTGASPFTLEGERNTQSEVSRRILKCDPPFPSFIGPEAQDLLHKLLRKDPKKR 253

Query: 497 PSA 499
             A
Sbjct: 254 LGA 256

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK2 and MSK1 play nonredundant roles in activating histone H3 kinases, which play pivotal roles in compaction of the chromatin fiber. MSK2 is the required H3 kinase in response to stress stimuli and activation of the p38 MAPK pathway. MSK2 also plays a role in the pathogenesis of psoriasis. Length = 332

>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 59/197 (29%), Positives = 83/197 (42%), Gaps = 43/197 (21%)

Query: 329 YLRERCAQLSM-------------HERVL-------LFTQLLEGVTHLNMHRTAHRDLKS 368
           YLRE  A L M             H++ L       +    L+G+ +L+ H   HRD+K+
Sbjct: 84  YLREHTAWLVMEYCLGSASDILEVHKKPLQEVEIAAICHGALQGLAYLHSHERIHRDIKA 143

Query: 369 DNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALAT-PG 427
            NILL  +E  T   + + DFGS+       S           G    MAPEV LA   G
Sbjct: 144 GNILL--TEPGT---VKLADFGSASLVSPANSFV---------GTPYWMAPEVILAMDEG 189

Query: 428 LFSFVNYSKSDAWTAGTVAYEIFGHDNP-FYQSARNTDYEV--NALPQLNTN-VPEVMRR 483
            +      K D W+ G    E+     P F  +A +  Y +  N  P L++N   +  R 
Sbjct: 190 QYD----GKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNDSPTLSSNDWSDYFRN 245

Query: 484 LVAKLLENDPSDRPSAE 500
            V   L+  P DRPS+E
Sbjct: 246 FVDSCLQKIPQDRPSSE 262

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3. Length = 307

>gnl|CDD|173674 cd05583, STKc_MSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

 Score = 52.5 bits (126), Expect = 2e-07
 Identities = 50/182 (27%), Positives = 79/182 (43%), Gaps = 38/182 (20%)

Query: 327 RNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVI 386
           R +  E   ++ + E VL        + HL+     +RD+K +NILLD   +     +V+
Sbjct: 99  REHFTESEVRVYIAEIVL-------ALDHLHQLGIIYRDIKLENILLD--SEG---HVVL 146

Query: 387 TDFGSSYTNKSGLSMQYSSADIELG----GNVALMAPEVALATPGLFSFVNYSKS-DAWT 441
           TDF        GLS ++ + + E      G +  MAPEV     G      + K+ D W+
Sbjct: 147 TDF--------GLSKEFLAEEEERAYSFCGTIEYMAPEVIRGGSG-----GHDKAVDWWS 193

Query: 442 AGTVAYEIFGHDNPF-YQSARNTDYEV------NALPQLNTNVPEVMRRLVAKLLENDPS 494
            G + +E+    +PF     +N+  E+      +  P   T   E  R  + KLLE DP 
Sbjct: 194 LGVLTFELLTGASPFTVDGEQNSQSEISRRILKSKPPFPKTMSAEA-RDFIQKLLEKDPK 252

Query: 495 DR 496
            R
Sbjct: 253 KR 254

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines. This triggers phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) in the C-terminal extension of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSKs are predominantly nuclear proteins. They are widely expressed in many tissues including heart, brain, lung, liver, kidney, and pancreas. There are two isoforms of MSK, called MSK1 and MSK2. Length = 288

>gnl|CDD|132964 cd06633, STKc_TAO3, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

 Score = 52.7 bits (126), Expect = 2e-07
 Identities = 53/159 (33%), Positives = 72/159 (45%), Gaps = 26/159 (16%)

Query: 350 LEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP-QLVITDFGSSYTNKSGLSMQYSSADI 408
           L+G+ +L+ H   HRD+K+ NILL      T P Q+ + DFGS+           SS   
Sbjct: 131 LQGLAYLHSHNMIHRDIKAGNILL------TEPGQVKLADFGSA---------SKSSPAN 175

Query: 409 ELGGNVALMAPEVALAT-PGLFSFVNYSKSDAWTAGTVAYEIFGHDNP-FYQSARNTDYE 466
              G    MAPEV LA   G +      K D W+ G    E+     P F  +A +  Y 
Sbjct: 176 SFVGTPYWMAPEVILAMDEGQYD----GKVDVWSLGITCIELAERKPPLFNMNAMSALYH 231

Query: 467 V--NALPQLNTNV-PEVMRRLVAKLLENDPSDRP-SAEL 501
           +  N  P L +N   +  R  V   L+  P +RP SAEL
Sbjct: 232 IAQNDSPTLQSNEWTDSFRGFVDYCLQKIPQERPASAEL 270

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a component of the RAM (regulation of Ace2p activity and cellular morphogenesis) signaling pathway. TAO3 is upregulated in retinal ganglion cells after axotomy, and may play a role in apoptosis. Length = 313

>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase, Fes

 Score = 51.9 bits (124), Expect = 2e-07
 Identities = 50/180 (27%), Positives = 77/180 (42%), Gaps = 22/180 (12%)

Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           D   +LR    +L + E + +      G+ +L      HRDL + N L+  +E N    L
Sbjct: 79  DFLTFLRTEGPRLKVKELIQMVENAAAGMEYLESKHCIHRDLAARNCLV--TEKNV---L 133

Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY-SKSDAWTAG 443
            I+DFG S   + G+   Y+S     GG   +    V    P   ++  Y S+SD W+ G
Sbjct: 134 KISDFGMSREEEDGV---YAST----GG---MKQIPVKWTAPEALNYGRYSSESDVWSFG 183

Query: 444 TVAYEIFG-----HDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS 498
            + +E F      + N   Q  R    +   LP      P+ + RL+ +  E DP  RPS
Sbjct: 184 ILLWEAFSLGAVPYANLSNQQTREAIEQGVRLP-CPELCPDAVYRLMERCWEYDPGQRPS 242

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells. It plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. A recent study implicates Fes kinase as a tumor suppressor in colorectal cancer. Length = 252

>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 54/205 (26%), Positives = 88/205 (42%), Gaps = 51/205 (24%)

Query: 318 LMKKYNTDLRNYLRERCAQ---------LSMHERVLLFTQLLEGVTHLNMHRTAHRDLKS 368
           LM K   DL++YLR R  +          ++ + + +  ++ +G+ +L   +  HRDL +
Sbjct: 90  LMAK--GDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAAKKFVHRDLAA 147

Query: 369 DNILLDCSEDNTCPQLVITDFG-------SSYTNKSGLSMQYSSADIELGGNVALMAPEV 421
            N ++  +ED T     I DFG       + Y  K G  +            V  MAPE 
Sbjct: 148 RNCMV--AEDLTVK---IGDFGMTRDIYETDYYRKGGKGLL----------PVRWMAPE- 191

Query: 422 ALATPGLFSFVNYSKSDAWTAGTVAYEI--FGHDNPFYQSARNTDYEV------NALPQL 473
           +L   G+F+    +KSD W+ G V +E+     + P YQ   N   EV           L
Sbjct: 192 SLKD-GVFT----TKSDVWSFGVVLWEMATLA-EQP-YQGLSNE--EVLKFVIDGGHLDL 242

Query: 474 NTNVPEVMRRLVAKLLENDPSDRPS 498
             N P+ +  L+    + +P  RP+
Sbjct: 243 PENCPDKLLELMRMCWQYNPKMRPT 267

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277

>gnl|CDD|173664 cd05573, STKc_ROCK_NDR_like, Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

 Score = 52.3 bits (126), Expect = 3e-07
 Identities = 33/129 (25%), Positives = 43/129 (33%), Gaps = 37/129 (28%)

Query: 363 HRDLKSDNILLDCSEDNTCPQLVITDFGSSYT-NKSGLSMQYSSADIELG---------- 411
           HRD+K DNIL+D         + + DFG     NK+     Y +    L           
Sbjct: 124 HRDIKPDNILID-----ADGHIKLADFGLCKKMNKAKDREYYLNDSHNLLFRDNVLVRRR 178

Query: 412 -------------GNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFY 457
                        G    +APEV   TP       Y    D W+ G + YE+     PFY
Sbjct: 179 DHKQRRVRANSTVGTPDYIAPEVLRGTP-------YGLECDWWSLGVILYEMLYGFPPFY 231

Query: 458 QSARNTDYE 466
                  Y 
Sbjct: 232 SDTLQETYN 240

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Proteins in this subfamily are involved in regulating many cellular functions including contraction, motility, division, proliferation, apoptosis, morphogenesis, and cytokinesis. Length = 350

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 51.7 bits (124), Expect = 3e-07
 Identities = 50/198 (25%), Positives = 76/198 (38%), Gaps = 42/198 (21%)

Query: 318 LMKKYNTDLRNYLR-ERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCS 376
           LMK     L  YL+      L + + + +  Q+  G+ +L      HRDL + N+L+   
Sbjct: 82  LMK--YGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEAQNYIHRDLAARNVLV--G 137

Query: 377 EDNTCPQLVITDFG-------SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF 429
           E+N C    + DFG         Y  + G               +   APE AL     F
Sbjct: 138 ENNICK---VADFGLARVIKEDIYEAREGAKFP-----------IKWTAPEAALYNR--F 181

Query: 430 SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNA-------LPQLNTNVPEVMR 482
           S     KSD W+ G +  EI  +    Y     T+ EV         +P      P+ + 
Sbjct: 182 SI----KSDVWSFGILLTEIVTYGRMPY--PGMTNAEVLQQVDQGYRMPC-PPGCPKELY 234

Query: 483 RLVAKLLENDPSDRPSAE 500
            ++    + DP DRP+ E
Sbjct: 235 DIMLDCWKEDPDDRPTFE 252

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 50.6 bits (121), Expect = 7e-07
 Identities = 42/131 (32%), Positives = 64/131 (48%), Gaps = 21/131 (16%)

Query: 323 NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 382
           N  L NYLRE   +    + + +   + EG+ +L   +  HRDL + N L+D   D  C 
Sbjct: 83  NGCLLNYLREHGKRFQPSQLLEMCKDVCEGMAYLESKQFIHRDLAARNCLVD---DQGCV 139

Query: 383 QLVITDFG-SSYTNKSGLSMQYSSADIELGGN--VALMAPEVALATPGLFSFVNYSKSDA 439
           +  ++DFG S Y     L  +Y+S+   +G    V    PEV L +   FS    SKSD 
Sbjct: 140 K--VSDFGLSRYV----LDDEYTSS---VGSKFPVRWSPPEVLLYSK--FS----SKSDV 184

Query: 440 WTAGTVAYEIF 450
           W  G + +E++
Sbjct: 185 WAFGVLMWEVY 195

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 50.3 bits (120), Expect = 7e-07
 Identities = 44/140 (31%), Positives = 68/140 (48%), Gaps = 21/140 (15%)

Query: 315 LFILMKKYNT-DLRNYLRERCAQLSMHERVLLFT-QLLEGVTHLNMHRTAHRDLKSDNIL 372
           L+I+M+  +  +L N+LR R   L    ++L F+  + EG+ +L   +  HRDL + NIL
Sbjct: 73  LYIVMELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLESKKLVHRDLAARNIL 132

Query: 373 LDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV 432
           +  SED       ++DFG +     G+              V   APE AL     FS  
Sbjct: 133 V--SEDGVAK---VSDFGLARVGSMGVDNSKLP--------VKWTAPE-ALKH-KKFS-- 175

Query: 433 NYSKSDAWTAGTVAYEIFGH 452
             SKSD W+ G + +E+F +
Sbjct: 176 --SKSDVWSYGVLLWEVFSY 193

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 50.7 bits (122), Expect = 8e-07
 Identities = 54/209 (25%), Positives = 86/209 (41%), Gaps = 43/209 (20%)

Query: 307 GGYGRNMSLFILMKKY--NTDLRNYLRERCAQLSMHERVLLFT--QLLEGVTHLNMHRTA 362
           G + +   L+I+M+ Y       + L+       + E  + F   ++L G+ +L+     
Sbjct: 66  GSFLKGSKLWIIME-YCGGGSCLDLLKPG----KLDETYIAFILREVLLGLEYLHEEGKI 120

Query: 363 HRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVA 422
           HRD+K+ NILL  SE+     + + DFG S      L+   S  +    G    MAPEV 
Sbjct: 121 HRDIKAANILL--SEEG---DVKLADFGVS----GQLTSTMSKRN-TFVGTPFWMAPEVI 170

Query: 423 LATPGLFSFVNY-SKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV---------NALPQ 472
             +        Y  K+D W+ G  A E+   + P       +D            N  P 
Sbjct: 171 KQS-------GYDEKADIWSLGITAIELAKGEPP------LSDLHPMRVLFLIPKNNPPS 217

Query: 473 LNTNV-PEVMRRLVAKLLENDPSDRPSAE 500
           L  N   +  +  V+  L  DP +RPSA+
Sbjct: 218 LEGNKFSKPFKDFVSLCLNKDPKERPSAK 246

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

 Score = 50.2 bits (120), Expect = 8e-07
 Identities = 56/195 (28%), Positives = 89/195 (45%), Gaps = 40/195 (20%)

Query: 326 LRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLV 385
           L NYLR+R  +LS    + +   + EG+ +L  +   HRDL + N L+     ++   + 
Sbjct: 86  LLNYLRQRQGKLSKDMLLSMCQDVCEGMEYLERNSFIHRDLAARNCLV-----SSTGVVK 140

Query: 386 ITDFGSSYTNKSGLSMQYSSADIELGGN--VALMAPEVALATPGLFSFVNYS-KSDAWTA 442
           ++DFG +   +  L  +Y+S+    G    V    PEV       F+F  YS KSD W+ 
Sbjct: 141 VSDFGMT---RYVLDDEYTSSS---GAKFPVKWSPPEV-------FNFSKYSSKSDVWSF 187

Query: 443 GTVAYEIFGHDN-PFYQSARNTDYEVNAL---------PQLNTN-VPEVMRRLVAKLLEN 491
           G + +E+F     PF    + ++YEV  +         P+L +  V EVM          
Sbjct: 188 GVLMWEVFTEGKMPF---EKKSNYEVVEMISRGFRLYRPKLASMTVYEVMYS----CWHE 240

Query: 492 DPSDRPS-AELAATV 505
            P  RP+ AEL   +
Sbjct: 241 KPEGRPTFAELLRAI 255

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. Instead of PH, Rlk contains an N-terminal cysteine-rich region. In addition to PH, Tec also contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Tec is more widely-expressed than other Tec subfamily kinases. It is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Rlk is expressed in T-cells and mast cell lines. Tec and Rlk are both key components of T-cell receptor (TCR) signaling. They are important in TCR-stimulated proliferation, IL-2 production and phopholipase C-gamma1 activation. Length = 256

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 50.3 bits (120), Expect = 9e-07
 Identities = 45/195 (23%), Positives = 72/195 (36%), Gaps = 37/195 (18%)

Query: 326 LRNYLRERCAQLSMHERVLLFTQ-LLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           LR+YL +    L+   ++LLF Q + EG+ +L+     HRDL + N+LLD   D     +
Sbjct: 95  LRDYLPKHKLNLA---QLLLFAQQICEGMAYLHSQHYIHRDLAARNVLLD--NDRL---V 146

Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGT 444
            I DFG +     G        D +        +P    A   L        SD W+ G 
Sbjct: 147 KIGDFGLAKAVPEGHEYYRVREDGD--------SPVFWYAVECLKENKFSYASDVWSFGV 198

Query: 445 VAYEIFGHDNPFYQSARN--------TDYEVNALPQLN-----------TNVPEVMRRLV 485
             YE+  H +   QS              ++  +  +             N P+ +  L+
Sbjct: 199 TLYELLTHCDS-KQSPPKKFEEMIGPKQGQMTVVRLIELLERGMRLPCPKNCPQEVYILM 257

Query: 486 AKLLENDPSDRPSAE 500
               E +   RP+  
Sbjct: 258 KNCWETEAKFRPTFR 272

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|173721 cd05632, STKc_GRK5, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

 Score = 50.4 bits (120), Expect = 1e-06
 Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 22/119 (18%)

Query: 341 ERVLLFT-QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGL 399
           ER L +  ++L G+  L+   T +RDLK +NILLD             D+G    +  GL
Sbjct: 102 ERALFYAAEILCGLEDLHRENTVYRDLKPENILLD-------------DYGHIRISDLGL 148

Query: 400 SMQYSSADIELG--GNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPF 456
           +++    +   G  G V  MAPEV        S       D W  G + YE+    +PF
Sbjct: 149 AVKIPEGESIRGRVGTVGYMAPEVLNNQRYTLS------PDYWGLGCLIYEMIEGQSPF 201

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with the membrane though an N-terminal PIP2 binding domain and also binds phospholipids via its C-terminus. GRK5 deficiency is associated with early Alzheimer's disease in humans and mouse models. GRK5 also plays a crucial role in the pathogenesis of sporadic Parkinson's disease. It participates in the regulation and desensitization of PDGFRbeta, a receptor tyrosine kinase involved in a variety of downstream cellular effects including cell growth, chemotaxis, apoptosis, and angiogenesis. GRK5 also regulates Toll-like receptor 4, which is involved in innate and adaptive immunity. Length = 285

>gnl|CDD|173763 cd08223, STKc_Nek4, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

 Score = 50.0 bits (119), Expect = 1e-06
 Identities = 59/214 (27%), Positives = 92/214 (42%), Gaps = 26/214 (12%)

Query: 291 SSLIYPSALPARLNPTGGYGRNMSLFILMK-KYNTDLRNYLRERCAQLSMHERVL-LFTQ 348
           S L +P+ +  R +  G  G    L+I+M      DL + L+E+  +L    +V+  F Q
Sbjct: 54  SQLKHPNIVAYRESWEGEDGL---LYIVMGFCEGGDLYHKLKEQKGKLLPENQVVEWFVQ 110

Query: 349 LLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADI 408
           +   + +L+     HRDLK+ N+ L  +  N    + + D G +      L  Q   A  
Sbjct: 111 IAMALQYLHEKHILHRDLKTQNVFL--TRTNI---IKVGDLGIARV----LENQCDMAST 161

Query: 409 ELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNT-DYE 466
            L G    M+PE       LFS   Y+ KSD W  G   YE+    + F     N+  Y 
Sbjct: 162 -LIGTPYYMSPE-------LFSNKPYNYKSDVWALGCCVYEMATLKHAFNAKDMNSLVYR 213

Query: 467 V--NALPQLNTNVPEVMRRLVAKLLENDPSDRPS 498
           +    LP +  +    +  L+A +L   P  RPS
Sbjct: 214 IIEGKLPPMPKDYSPELGELIATMLSKRPEKRPS 247

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown. Length = 257

>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

 Score = 49.8 bits (119), Expect = 1e-06
 Identities = 42/164 (25%), Positives = 66/164 (40%), Gaps = 28/164 (17%)

Query: 342 RVLLFT-QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLS 400
           R + +  Q++ G+ HL+  R  +RDLK +N+LLD  +        I+D G +   K G  
Sbjct: 96  RAIFYAAQIICGLEHLHQRRIVYRDLKPENVLLD--DHGNVR---ISDLGLAVELKGGKK 150

Query: 401 MQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSA 460
           ++  +      G    MAPEV      ++ F      D +  G   YE+    +PF Q  
Sbjct: 151 IKGRA------GTPGYMAPEVLQG--EVYDF----SVDWFALGCTLYEMIAGRSPFRQ-- 196

Query: 461 RNTDYEVNALPQLNTNVP--------EVMRRLVAKLLENDPSDR 496
           R    E   L +    +            + L   LL+ DP  R
Sbjct: 197 RKEKVEKEELKRRTLEMAVEYPDKFSPEAKDLCEALLQKDPEKR 240

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of G protein signaling) homology (RH) domain and several motifs. The C-terminus diverges among different groups of GRKs. There are seven types of GRKs, named GRK1 to GRK7. They are subdivided into three main groups: visual (GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is widespread while GRK1/4/7 show a limited tissue distribution. The substrate spectrum of the widely expressed GRKs partially overlaps. GRKs play important roles in the cardiovascular, immune, respiratory, skeletal, and nervous systems. Length = 277

>gnl|CDD|173768 cd08228, STKc_Nek6, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

 Score = 50.0 bits (119), Expect = 1e-06
 Identities = 47/158 (29%), Positives = 67/158 (42%), Gaps = 22/158 (13%)

Query: 346 FTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSS 405
           F QL   V H++  R  HRD+K  N+ +  +       L +  F SS T          +
Sbjct: 112 FVQLCSAVEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKT----------T 161

Query: 406 ADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARN--- 462
           A   L G    M+PE  +   G ++F    KSD W+ G + YE+    +PFY    N   
Sbjct: 162 AAHSLVGTPYYMSPE-RIHENG-YNF----KSDIWSLGCLLYEMAALQSPFYGDKMNLFS 215

Query: 463 --TDYEVNALPQLNT-NVPEVMRRLVAKLLENDPSDRP 497
                E    P L T +  E +R LV+  +  DP  RP
Sbjct: 216 LCQKIEQCDYPPLPTEHYSEKLRELVSMCIYPDPDQRP 253

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase and anaphase, and to the midbody during cytokinesis. Length = 267

>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 37/103 (35%), Positives = 50/103 (48%), Gaps = 13/103 (12%)

Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
           Q+LE +  L+ H+  HRDLK+ NILL  + D     + + DFG S  NKS  ++Q     
Sbjct: 111 QMLEALNFLHSHKVIHRDLKAGNILL--TLDG---DVKLADFGVSAKNKS--TLQKRDTF 163

Query: 408 IELGGNVALMAPEVALATPGLFSFVNY-SKSDAWTAGTVAYEI 449
           I   G    MAPEV       F    Y  K+D W+ G    E+
Sbjct: 164 I---GTPYWMAPEVVACET--FKDNPYDYKADIWSLGITLIEL 201

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions. Length = 280

>gnl|CDD|173704 cd05613, STKc_MSK1_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

 Score = 50.0 bits (119), Expect = 1e-06
 Identities = 43/183 (23%), Positives = 83/183 (45%), Gaps = 30/183 (16%)

Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           +L  +L +R  +    E  +   +++  + HL+     +RD+K +NILLD +       +
Sbjct: 91  ELFTHLSQR-ERFKEQEVQIYSGEIVLALEHLHKLGIIYRDIKLENILLDSNG-----HV 144

Query: 385 VITDFGSSYTNKSGLSMQYSSADIE----LGGNVALMAPEVALATPGLFSFVNYSKS-DA 439
           V+TDF        GLS ++   ++E      G +  MAP++     G      + K+ D 
Sbjct: 145 VLTDF--------GLSKEFHEDEVERAYSFCGTIEYMAPDIVRGGDG-----GHDKAVDW 191

Query: 440 WTAGTVAYEIFGHDNPF-YQSARNTDYEVN-----ALPQLNTNVPEVMRRLVAKLLENDP 493
           W+ G + YE+    +PF     +N+  E++     + P     +  + + ++ +LL  DP
Sbjct: 192 WSMGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEPPYPQEMSALAKDIIQRLLMKDP 251

Query: 494 SDR 496
             R
Sbjct: 252 KKR 254

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK1 plays a role in the regulation of translational control and transcriptional activation. It phosphorylates the transcription factors, CREB and NFkappaB. It also phosphorylates the nucleosomal proteins H3 and HMG-14. Increased phosphorylation of MEK1 is associated with the development of cerebral ischemic/hypoxic preconditioning. Length = 290

>gnl|CDD|143375 cd07870, STKc_PFTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

 Score = 50.0 bits (119), Expect = 1e-06
 Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 17/138 (12%)

Query: 314 SLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
           +L  + +  +TDL  Y+ +    L  +   L   QLL G+ +++     HRDLK  N+L+
Sbjct: 77  TLTFVFEYMHTDLAQYMIQHPGGLHPYNVRLFMFQLLRGLAYIHGQHILHRDLKPQNLLI 136

Query: 374 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN 433
                    +L + DFG +   KS  S  YSS  + L        P+V L         +
Sbjct: 137 SY-----LGELKLADFGLARA-KSIPSQTYSSEVVTLW----YRPPDVLLGA------TD 180

Query: 434 YSKS-DAWTAGTVAYEIF 450
           YS + D W AG +  E+ 
Sbjct: 181 YSSALDIWGAGCIFIEML 198

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recessive form of juvenile ALS. The function of PFTAIRE-2 is not yet known. Length = 291

>gnl|CDD|143359 cd07854, STKc_MAPK4_6, Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 42/143 (29%), Positives = 64/143 (44%), Gaps = 27/143 (18%)

Query: 314 SLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
           S++I+ +   TDL N L +    LS     L   QLL G+ +++     HRDLK  N+ +
Sbjct: 90  SVYIVQEYMETDLANVLEQ--GPLSEEHARLFMYQLLRGLKYIHSANVLHRDLKPANVFI 147

Query: 374 DCSEDNTCPQLVITDFG------SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG 427
           + +ED     L I DFG        Y++K  LS    +            +P +      
Sbjct: 148 N-TEDLV---LKIGDFGLARIVDPHYSHKGYLSEGLVTK--------WYRSPRL------ 189

Query: 428 LFSFVNYSKS-DAWTAGTVAYEI 449
           L S  NY+K+ D W AG +  E+
Sbjct: 190 LLSPNNYTKAIDMWAAGCIFAEM 212

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progression in certain conditions. It may also play a role in glucose-induced insulin secretion. MAPK6 and MAPK4 cooperate to regulate the activity of MAPK-activated protein kinase 5 (MK5), leading to its relocation to the cytoplasm and exclusion from the nucleus. The MAPK6/MK5 and MAPK4/MK5 pathways may play critical roles in embryonic and post-natal development. Length = 342

>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 47/186 (25%), Positives = 76/186 (40%), Gaps = 38/186 (20%)

Query: 330 LRERCAQLSMHERVL--LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVIT 387
           +++R  ++   E+VL  +   +L+G+++L+  +  HRD+K  NILL         Q+ + 
Sbjct: 95  VKKRGGRIG--EKVLGKIAESVLKGLSYLHSRKIIHRDIKPSNILL-----TRKGQVKLC 147

Query: 388 DFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGTVA 446
           DFG S    + L+  ++       G    MAPE     P       YS  SD W+ G   
Sbjct: 148 DFGVSGELVNSLAGTFT-------GTSFYMAPERIQGKP-------YSITSDVWSLGLTL 193

Query: 447 YEIFGHDNPFYQSARNT-------DYEVNAL-------PQLNTNVPEVMRRLVAKLLEND 492
            E+  +  PF               Y VN         P       E  +  + + LE D
Sbjct: 194 LEVAQNRFPFPPEGEPPLGPIELLSYIVNMPNPELKDEPGNGIKWSEEFKDFIKQCLEKD 253

Query: 493 PSDRPS 498
           P+ RP+
Sbjct: 254 PTRRPT 259

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287

>gnl|CDD|173699 cd05608, STKc_GRK1, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 47/164 (28%), Positives = 64/164 (39%), Gaps = 27/164 (16%)

Query: 342 RVLLFT-QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLS 400
           R   +T Q++ G+ HL+  R  +RDLK +N+LLD ++ N    + I+D G +   K G S
Sbjct: 98  RACFYTAQIISGLEHLHQRRIIYRDLKPENVLLD-NDGN----VRISDLGLAVELKDGQS 152

Query: 401 MQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSA 460
                A     G    MAPE+       FS       D +  G   YE+     PF   A
Sbjct: 153 KTKGYA-----GTPGFMAPELLQGEEYDFSV------DYFALGVTLYEMIAARGPF--RA 199

Query: 461 RNTDYEVNALPQLNTNVP--------EVMRRLVAKLLENDPSDR 496
           R    E   L Q   N             +     LL  DP  R
Sbjct: 200 RGEKVENKELKQRILNDSVTYPDKFSPASKSFCEALLAKDPEKR 243

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual group of GRKs and is expressed in retinal cells. It phosphorylates rhodopsin in rod cells, which leads to termination of the phototransduction cascade. Mutations in GRK1 are associated to a recessively inherited form of stationary nightblindness called Oguchi disease. Length = 280

>gnl|CDD|173750 cd07857, STKc_MPK1, Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 76/356 (21%), Positives = 122/356 (34%), Gaps = 103/356 (28%)

Query: 199 QIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILK---AMSKELLPLRKPLR 255
           ++ K + +G   +V  A          +           AI K     SK++L  ++ LR
Sbjct: 3   ELIKELGQGAYGIVCSARNAETSEEETV-----------AIKKITNVFSKKIL-AKRALR 50

Query: 256 LNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSL 315
             E  L+        H N+  ++           D  +++P                  L
Sbjct: 51  --ELKLLRHFRG---HKNITCLY-----------DMDIVFPGNFN-------------EL 81

Query: 316 FILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNIL--L 373
           ++  +    DL   +R        H +  ++ Q+L G+ +++     HRDLK  N+L   
Sbjct: 82  YLYEELMEADLHQIIRSGQPLTDAHFQSFIY-QILCGLKYIHSANVLHRDLKPGNLLVNA 140

Query: 374 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALM---APEVALATPGLFS 430
           DC       +L I DFG +     G S         +   VA     APE+ L      S
Sbjct: 141 DC-------ELKICDFGLA----RGFSENPGENAGFMTEYVATRWYRAPEIML------S 183

Query: 431 FVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRR------ 483
           F +Y+K+ D W+ G +  E+ G   P ++     D     L  L T   E + R      
Sbjct: 184 FQSYTKAIDVWSVGCILAELLGR-KPVFKGKDYVDQLNQILQVLGTPDEETLSRIGSPKA 242

Query: 484 ----------------------------LVAKLLENDPSDRPSAELAATVCQLYLW 511
                                       L+ KLL  DP+ R S E A     L +W
Sbjct: 243 QNYIRSLPNIPKKPFESIFPNANPLALDLLEKLLAFDPTKRISVEEALEHPYLAIW 298

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall construction, morphogenesis, and ion homeostasis. MPK1 is activated in response to cell wall stress including heat stimulation, osmotic shock, UV irradiation, and any agents that interfere with cell wall biogenesis such as chitin antagonists, caffeine, or zymolase. MPK1 is regulated by the MAP2Ks Mkk1/2, which are regulated by the MAP3K Bck1. Pmk1 is also activated by multiple stresses including elevated temperatures, hyper- or hypotonic stress, glucose deprivation, exposure to cell-wall damaging compounds, and oxidative stress. It is regulated by the MAP2K Pek1, which is regulated by the MAP3K Mkh1. Length = 332

>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 52/196 (26%), Positives = 80/196 (40%), Gaps = 32/196 (16%)

Query: 325 DLRNYLRERCAQLSMHERVLLFT-QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQ 383
           +LR+YL+     L     ++L++ QL   + +L   R  HRD+ + N+L+       C +
Sbjct: 92  ELRSYLQVNKYSLD-LASLILYSYQLSTALAYLESKRFVHRDIAARNVLV---SSPDCVK 147

Query: 384 LVITDFG-SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY----SKSD 438
           L   DFG S Y         Y ++  +L   +  MAPE           +N+    S SD
Sbjct: 148 L--GDFGLSRYLEDESY---YKASKGKL--PIKWMAPES----------INFRRFTSASD 190

Query: 439 AWTAGTVAYEIFGHDNPFYQSARNTDY----EVNALPQLNTNVPEVMRRLVAKLLENDPS 494
            W  G   +EI       +Q  +N D     E      +  N P  +  L+ K    DPS
Sbjct: 191 VWMFGVCMWEILMLGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPS 250

Query: 495 DRPS-AELAATVCQLY 509
            RP   EL A +  + 
Sbjct: 251 KRPRFTELKAQLSDIL 266

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions and at growth factor receptors. Through diverse molecular interactions, FAK functions as a biosensor or integrator to control cell motility. It is a key regulator of cell survival, proliferation, migration and invasion, and thus plays an important role in the development and progression of cancer. Src binds to autophosphorylated FAK forming the FAK-Src dual kinase complex, which is activated in a wide variety of tumor cells and generates signals promoting growth and metastasis. FAK is being developed as a target for cancer therapy. Length = 270

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 61/260 (23%), Positives = 99/260 (38%), Gaps = 79/260 (30%)

Query: 197 DIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRL 256
           ++++G  I KG    V    +RG + A+K + + S A+ +                   L
Sbjct: 7   ELKLGATIGKGEFGDVMLGDYRGQKVAVKCLKDDSTAAQAF------------------L 48

Query: 257 NEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLF 316
            E  +M ++     HPN+V         +  +   + +Y                     
Sbjct: 49  AEASVMTTLR----HPNLVQ-------LLGVVLQGNPLY--------------------- 76

Query: 317 IL---MKKYNTDLRNYLRERCAQLSMHERVLLFT-QLLEGVTHLNMHRTAHRDLKSDNIL 372
           I+   M K +  L +YLR R   +    + L F   + EG+ +L      HRDL + N+L
Sbjct: 77  IVTEYMAKGS--LVDYLRSRGRAVITLAQQLGFALDVCEGMEYLEEKNFVHRDLAARNVL 134

Query: 373 LDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGN--VALMAPEVALATPGLFS 430
           +  SED       ++DFG +     G             G   V   APE AL     FS
Sbjct: 135 V--SEDLVAK---VSDFGLAKEASQGQD----------SGKLPVKWTAPE-ALRE-KKFS 177

Query: 431 FVNYSKSDAWTAGTVAYEIF 450
               +KSD W+ G + +EI+
Sbjct: 178 ----TKSDVWSFGILLWEIY 193

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 50/205 (24%), Positives = 86/205 (41%), Gaps = 34/205 (16%)

Query: 307 GGYGRNMSLFILMKKYNT-DLRNYLR-----ERCAQLSMHERVLLFTQLLEGVTHLNMHR 360
           G Y +   L+I+M+      +R  ++     E+   + + E       +L  + +++   
Sbjct: 69  GSYLKGPRLWIIMEYAEGGSVRTLMKAGPIAEKYISVIIRE-------VLVALKYIHKVG 121

Query: 361 TAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPE 420
             HRD+K+ NIL+          + + DFG      + L  Q SS      G    MAPE
Sbjct: 122 VIHRDIKAANILV-----TNTGNVKLCDFGV-----AALLNQNSSKRSTFVGTPYWMAPE 171

Query: 421 VALATPGLFSFVNY-SKSDAWTAGTVAYEIFGHDNPFYQ--SARNTDYEV-NALPQLNTN 476
           V            Y +K+D W+ G   YE+   + P+    + R       +  P+L  N
Sbjct: 172 VITEG------KYYDTKADIWSLGITIYEMATGNPPYSDVDAFRAMMLIPKSKPPRLEDN 225

Query: 477 -VPEVMRRLVAKLLENDPSDRPSAE 500
              +++R  VA  L+ +P +R SAE
Sbjct: 226 GYSKLLREFVAACLDEEPKERLSAE 250

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner. Length = 277

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 43/145 (29%), Positives = 67/145 (46%), Gaps = 20/145 (13%)

Query: 315 LFILMK-KYNTDLRNYLRERCAQLSMHERVL-LFTQLLEGVTHLNMHRTAHRDLKSDNIL 372
           L I+M+   N DL   L+ +  +    ++V   F Q+L G+ HL+  +  HRD+KS N+ 
Sbjct: 74  LNIVMEYAENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLHSKKILHRDIKSLNLF 133

Query: 373 LDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV 432
           LD  +      + I D G +      LS   + A+  + G    ++PE+    P      
Sbjct: 134 LDAYD-----NVKIGDLGVAKL----LSDNTNFANTIV-GTPYYLSPELCEDKP------ 177

Query: 433 NYS-KSDAWTAGTVAYEIFGHDNPF 456
            Y+ KSD W  G V YE     +PF
Sbjct: 178 -YNEKSDVWALGVVLYECCTGKHPF 201

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|143376 cd07871, STKc_PCTAIRE3, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

 Score = 49.2 bits (117), Expect = 2e-06
 Identities = 54/221 (24%), Positives = 93/221 (42%), Gaps = 47/221 (21%)

Query: 314 SLFILMKKYNTDLRNYLRERCAQL-SMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNIL 372
            L ++ +  ++DL+ YL + C  L SMH   +   QLL G+++ +  +  HRDLK  N+L
Sbjct: 77  CLTLVFEYLDSDLKQYL-DNCGNLMSMHNVKIFMFQLLRGLSYCHKRKILHRDLKPQNLL 135

Query: 373 LDCSEDNTCPQLVITDFG---------SSYTNKSGLSMQYSSADIELGGN---------- 413
           +     N   +L + DFG          +Y+N+  +++ Y   D+ LG            
Sbjct: 136 I-----NEKGELKLADFGLARAKSVPTKTYSNEV-VTLWYRPPDVLLGSTEYSTPIDMWG 189

Query: 414 VALMAPEVALATPG------------LFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSAR 461
           V  +  E+A   P             +F  +     + W   T   E   +  P Y+   
Sbjct: 190 VGCILYEMATGRPMFPGSTVKEELHLIFRLLGTPTEETWPGITSNEEFRSYLFPQYR--- 246

Query: 462 NTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA 502
                +N  P+L+T+  +    L++ LL  +   R SAE A
Sbjct: 247 -AQPLINHAPRLDTDGID----LLSSLLLYETKSRISAEAA 282

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filaments (PHFs) and stimulate Tau phosphorylation. As AD progresses, phosphorylated Tau aggregates and forms PHFs, which leads to the formation of neurofibrillary tangles (NFTs). In human glioma cells, PCTAIRE-3 induces cell cycle arrest and cell death. Length = 288

>gnl|CDD|143380 cd07875, STKc_JNK1, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

 Score = 49.3 bits (117), Expect = 3e-06
 Identities = 51/192 (26%), Positives = 80/192 (41%), Gaps = 44/192 (22%)

Query: 315 LFILMKKYNTDLRNYLRERCAQLSM---HERV-LLFTQLLEGVTHLNMHRTAHRDLKSDN 370
           ++I+M+  + +L       C  + M   HER+  L  Q+L G+ HL+     HRDLK  N
Sbjct: 104 VYIVMELMDANL-------CQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSN 156

Query: 371 ILL--DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVA---LAT 425
           I++  DC+       L I DFG + T                 G   +M P V       
Sbjct: 157 IVVKSDCT-------LKILDFGLART----------------AGTSFMMTPYVVTRYYRA 193

Query: 426 PGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRL 484
           P +   + Y ++ D W+ G +  E+       +    + D     + QL T  PE M++L
Sbjct: 194 PEVILGMGYKENVDIWSVGCIMGEMIKG-GVLFPGTDHIDQWNKVIEQLGTPCPEFMKKL 252

Query: 485 ---VAKLLENDP 493
              V   +EN P
Sbjct: 253 QPTVRTYVENRP 264

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK1 specifically binds with JAMP (JNK1-associated membrane protein), which regulates the duration of JNK1 activity in response to stimuli. Specific JNK1 substrates include Itch and SG10, which are implicated in Th2 responses and airway inflammation, and microtubule dynamics and axodendritic length, respectively. Mice deficient in Jnk1 are protected against arthritis, obesity, type 2 diabetes, cardiac cell death, and non-alcoholic liver disease, suggesting that JNK1 may play roles in the pathogenesis of these diseases. Length = 364

>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 41/143 (28%), Positives = 60/143 (41%), Gaps = 23/143 (16%)

Query: 314 SLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
           S+F++M+    DL + L       S  +   L  QLL G+ +L+ +   HRDLK  N+LL
Sbjct: 82  SIFLVMEYCEQDLASLLDNMPTPFSESQVKCLMLQLLRGLQYLHENFIIHRDLKVSNLLL 141

Query: 374 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALM---APEVALATPGLFS 430
               D  C  L I DF        GL+  Y      +   V  +   APE+      L  
Sbjct: 142 T---DKGC--LKIADF--------GLARTYGLPAKPMTPKVVTLWYRAPEL------LLG 182

Query: 431 FVNYSKS-DAWTAGTVAYEIFGH 452
              Y+ + D W  G +  E+  H
Sbjct: 183 CTTYTTAIDMWAVGCILAELLAH 205

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 48.4 bits (116), Expect = 4e-06
 Identities = 56/215 (26%), Positives = 78/215 (36%), Gaps = 56/215 (26%)

Query: 312 NMSLFILMKKYNT--DL----RNYLRERCAQLSMHERVLL--FTQLLEGVTH-----LNM 358
           N +L+I+M+ Y    DL    +   +ER     + E  +    TQLL  +          
Sbjct: 73  NQTLYIVME-YCEGGDLAQLIQKCKKER---KYIEEEFIWRILTQLLLALYECHNRSDPG 128

Query: 359 HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMA 418
           +   HRDLK  NI LD    N   +L   DFG +       S   +       G    M+
Sbjct: 129 NTVLHRDLKPANIFLD---ANNNVKL--GDFGLAKILGHDSSFAKTYV-----GTPYYMS 178

Query: 419 PEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNV 477
           PE             Y  KSD W+ G + YE+     PF   ARN         QL + +
Sbjct: 179 PEQLNHMS-------YDEKSDIWSLGCLIYELCALSPPFT--ARNQL-------QLASKI 222

Query: 478 PEVM------------RRLVAKLLENDPSDRPSAE 500
            E                ++  +L  DP  RPS E
Sbjct: 223 KEGKFRRIPYRYSSELNEVIKSMLNVDPDKRPSTE 257

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|143349 cd07844, STKc_PCTAIRE_like, Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

 Score = 48.5 bits (116), Expect = 4e-06
 Identities = 59/219 (26%), Positives = 82/219 (37%), Gaps = 60/219 (27%)

Query: 324 TDLRNYLRERCAQ-LSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 382
           TDL+ Y+ + C   LSMH   L   QLL G+ + +  R  HRDLK  N+L+     +   
Sbjct: 87  TDLKQYM-DDCGGGLSMHNVRLFLFQLLRGLAYCHQRRVLHRDLKPQNLLI-----SERG 140

Query: 383 QLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWT 441
           +L + DFG +   KS  S  YS+  + L        P+V L +        YS S D W 
Sbjct: 141 ELKLADFGLARA-KSVPSKTYSNEVVTLW----YRPPDVLLGS------TEYSTSLDMWG 189

Query: 442 AGTVAYE--------------------IFG-------------HDNPFYQSARNTDYEVN 468
            G + YE                    IF                NP ++      Y   
Sbjct: 190 VGCIFYEMATGRPLFPGSTDVEDQLHKIFRVLGTPTEETWPGVSSNPEFKPYSFPFYPPR 249

Query: 469 ALPQLNTNVPEVMRR-----LVAKLLENDPSDRPSAELA 502
            L     + P + R      L  K L+ +P  R SA  A
Sbjct: 250 PLIN---HAPRLDRIPHGEELALKFLQYEPKKRISAAEA 285

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the membrane-associated cyclin Y. PCTAIRE-like proteins show unusual expression patterns with high levels in post-mitotic tissues, suggesting that they may be involved in regulating post-mitotic cellular events. Length = 291

>gnl|CDD|173769 cd08229, STKc_Nek7, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

 Score = 48.1 bits (114), Expect = 5e-06
 Identities = 45/162 (27%), Positives = 67/162 (41%), Gaps = 30/162 (18%)

Query: 346 FTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSS 405
           F QL   + H++  R  HRD+K  N+ +  +       L +  F SS T          +
Sbjct: 112 FVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKT----------T 161

Query: 406 ADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARN--- 462
           A   L G    M+PE  +   G ++F    KSD W+ G + YE+    +PFY    N   
Sbjct: 162 AAHSLVGTPYYMSPE-RIHENG-YNF----KSDIWSLGCLLYEMAALQSPFYGDKMNLYS 215

Query: 463 -------TDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRP 497
                   DY     P  + +  E +R+LV   +  DP  RP
Sbjct: 216 LCKKIEQCDYP----PLPSDHYSEELRQLVNMCINPDPEKRP 253

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|173758 cd08218, STKc_Nek1, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

 Score = 47.9 bits (114), Expect = 5e-06
 Identities = 45/159 (28%), Positives = 76/159 (47%), Gaps = 25/159 (15%)

Query: 346 FTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSS 405
           F Q+   + H++  +  HRD+KS NI L  ++D T   + + DFG +    S  +++ + 
Sbjct: 107 FVQICLALKHVHDRKILHRDIKSQNIFL--TKDGT---IKLGDFGIARVLNS--TVELAR 159

Query: 406 ADIELGGNVALMAPEVALATPGLFSFVNY-SKSDAWTAGTVAYEIFGHDNPFYQSARNTD 464
             I   G    ++PE+    P       Y +KSD W  G V YE+    + F   A N  
Sbjct: 160 TCI---GTPYYLSPEICENRP-------YNNKSDIWALGCVLYEMCTLKHAF--EAGNMK 207

Query: 465 YEV-----NALPQLNTNVPEVMRRLVAKLLENDPSDRPS 498
             V      + P ++++    +R LV++L + +P DRPS
Sbjct: 208 NLVLKIIRGSYPPVSSHYSYDLRNLVSQLFKRNPRDRPS 246

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycystic kidney disease, which is characterized by benign polycystic tumors formed by abnormal overgrowth of renal epithelial cells. It appears also to be involved in DNA damage response, and may be important for both correct DNA damage checkpoint activation and DNA repair. Length = 256

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 54/199 (27%), Positives = 81/199 (40%), Gaps = 44/199 (22%)

Query: 318 LMKKYNTDLRNYLRE-RCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCS 376
            M K +  L ++L+     +L + + V +  Q+ EG+ +L      HRDL + NIL+   
Sbjct: 82  YMSKGS--LLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLESRNYIHRDLAARNILV--G 137

Query: 377 EDNTCPQLVITDFG-------SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF 429
           E+  C    I DFG         YT + G               +   APE A    G F
Sbjct: 138 ENLVCK---IADFGLARLIEDDEYTAREGAKFP-----------IKWTAPEAANY--GRF 181

Query: 430 SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLN--------TNVPEVM 481
           +     KSD W+ G +  EI  +    Y    N   EV  L Q+          N PE +
Sbjct: 182 TI----KSDVWSFGILLTEIVTYGRVPYPGMTNR--EV--LEQVERGYRMPRPPNCPEEL 233

Query: 482 RRLVAKLLENDPSDRPSAE 500
             L+ +  + DP +RP+ E
Sbjct: 234 YDLMLQCWDKDPEERPTFE 252

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

 Score = 47.9 bits (114), Expect = 7e-06
 Identities = 60/224 (26%), Positives = 85/224 (37%), Gaps = 58/224 (25%)

Query: 310 GRNMSLFILMKKYNTDLRNYLRERCA---------------------QLSMHERVLLFTQ 348
           G+ M L      Y  DL  +LR R                        LS  E++ +  Q
Sbjct: 80  GKPMCLLFEYMAYG-DLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQ 138

Query: 349 LLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD- 407
           +  G+ +L+  +  HRDL + N L+   E+     + I DFG        LS    SAD 
Sbjct: 139 VAAGMAYLSERKFVHRDLATRNCLV--GENMV---VKIADFG--------LSRNIYSADY 185

Query: 408 IELGGNVAL----MAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHD-NPFYQSAR 461
            +   N A+    M PE          +  Y+ +SD W  G V +EIF +   P+Y  A 
Sbjct: 186 YKASENDAIPIRWMPPESIF-------YNRYTTESDVWAYGVVLWEIFSYGMQPYYGMAH 238

Query: 462 NT------DYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSA 499
                   D  V + P    N P  +  L+       PSDRPS 
Sbjct: 239 EEVIYYVRDGNVLSCPD---NCPLELYNLMRLCWSKLPSDRPSF 279

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates Musk autophosphorylation and activation, leading to the clustering of acetylcholine receptors (AChRs). To date, there is no evidence to suggest that agrin binds directly to Musk. Mutations in AChR, Musk and other partners are responsible for diseases of the NMJ, such as the autoimmune syndrome myasthenia gravis. Length = 288

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 47.3 bits (112), Expect = 7e-06
 Identities = 44/182 (24%), Positives = 76/182 (41%), Gaps = 29/182 (15%)

Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           D  ++LR++  +L   + V        G+ +L      HRDL + N L+   E+N    L
Sbjct: 78  DFLSFLRKKKDELKTKQLVKFALDAAAGMAYLESKNCIHRDLAARNCLV--GENNV---L 132

Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY-SKSDAWTAG 443
            I+DFG S     G+   YSS+         L    +    P   ++  Y S+SD W+ G
Sbjct: 133 KISDFGMSRQEDDGI---YSSS--------GLKQIPIKWTAPEALNYGRYSSESDVWSYG 181

Query: 444 TVAYEIF--------GHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSD 495
            + +E F        G  N   +      Y ++  PQ     P+ + +++ +  +  P +
Sbjct: 182 ILLWETFSLGVCPYPGMTNQQAREQVEKGYRMSC-PQ---KCPDDVYKVMQRCWDYKPEN 237

Query: 496 RP 497
           RP
Sbjct: 238 RP 239

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 47.6 bits (114), Expect = 7e-06
 Identities = 41/163 (25%), Positives = 71/163 (43%), Gaps = 29/163 (17%)

Query: 346 FTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSS 405
             Q+L+G+ +L+     HRD+K+ NIL   ++D       + DFG + T  + +S     
Sbjct: 105 VYQVLQGLAYLHEQGVIHRDIKAANILT--TKDGVVK---LADFGVA-TKLNDVSKD--- 155

Query: 406 ADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY 465
            D  + G    MAPEV   +         + SD W+ G    E+   + P+Y    N   
Sbjct: 156 -DASVVGTPYWMAPEVIEMSGA------STASDIWSLGCTVIELLTGNPPYYD--LNP-- 204

Query: 466 EVNAL--------PQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
            + AL        P L   +   ++  + +  + DP+ RP+A+
Sbjct: 205 -MAALFRIVQDDHPPLPEGISPELKDFLMQCFQKDPNLRPTAK 246

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 47.7 bits (114), Expect = 7e-06
 Identities = 55/212 (25%), Positives = 84/212 (39%), Gaps = 43/212 (20%)

Query: 307 GGYGRNMSLFILMKKYN-TDLRNYLRERCAQLSMHERVL--LFTQLLEGVTHL-NMHRTA 362
           G +  N  + I M+  +   L   L+E   Q  + ER+L  +   +L+G+T+L   H+  
Sbjct: 66  GAFYNNGDISICMEYMDGGSLDKILKE--VQGRIPERILGKIAVAVLKGLTYLHEKHKII 123

Query: 363 HRDLKSDNILLDCSEDNTCPQLVITDFGSS--YTNKSGLSMQYSSADIELGGNVALMAPE 420
           HRD+K  NIL+     N+  Q+ + DFG S    N    S+  +       G  + MAPE
Sbjct: 124 HRDVKPSNILV-----NSRGQIKLCDFGVSGQLVN----SLAKTFV-----GTSSYMAPE 169

Query: 421 VALATPGLFSFVNYS-KSDAWTAGTVAYEI-----------FGHDNPFYQSARNTDYEVN 468
                       +YS KSD W+ G    E+              D  F       +    
Sbjct: 170 RIQGN-------DYSVKSDIWSLGLSLIELATGRFPYPPENDPPDGIFELLQYIVNEPPP 222

Query: 469 ALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
            LP  +       +  V   L  DP +RPS +
Sbjct: 223 RLP--SGKFSPDFQDFVNLCLIKDPRERPSYK 252

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

 Score = 47.2 bits (112), Expect = 8e-06
 Identities = 49/196 (25%), Positives = 82/196 (41%), Gaps = 36/196 (18%)

Query: 323 NTDLRNYLR-ERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTC 381
           N  L ++L+     +L++++ + +  Q+ EG+  +      HRDL++ NIL+  SE   C
Sbjct: 84  NGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIERKNYIHRDLRAANILV--SETLCC 141

Query: 382 PQLVITDFG-------SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY 434
               I DFG       + YT + G               +   APE      G F+    
Sbjct: 142 K---IADFGLARLIEDNEYTAREGAKFP-----------IKWTAPEA--INYGTFTI--- 182

Query: 435 SKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVN-----ALPQLNTNVPEVMRRLVAKLL 489
            KSD W+ G +  EI  +    Y    N +   N      +P+ + N PE +  L+    
Sbjct: 183 -KSDVWSFGILLTEIVTYGRIPYPGMTNPEVIQNLERGYRMPRPD-NCPEELYELMRLCW 240

Query: 490 ENDPSDRPSAELAATV 505
           +  P +RP+ E   +V
Sbjct: 241 KEKPEERPTFEYLRSV 256

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260

>gnl|CDD|143378 cd07873, STKc_PCTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

 Score = 47.7 bits (113), Expect = 8e-06
 Identities = 54/220 (24%), Positives = 94/220 (42%), Gaps = 45/220 (20%)

Query: 314 SLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
           SL ++ +  + DL+ YL +    ++MH   L   QLL G+ + +  +  HRDLK  N+L+
Sbjct: 78  SLTLVFEYLDKDLKQYLDDCGNSINMHNVKLFLFQLLRGLNYCHRRKVLHRDLKPQNLLI 137

Query: 374 DCSEDNTCPQLVITDFG---------SSYTNKSGLSMQYSSADIELGGN----------V 414
                N   +L + DFG          +Y+N+  +++ Y   DI LG            V
Sbjct: 138 -----NERGELKLADFGLARAKSIPTKTYSNEV-VTLWYRPPDILLGSTDYSTQIDMWGV 191

Query: 415 ALMAPEVALATP------------GLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARN 462
             +  E++   P             +F  +     + W       E   ++ P Y++   
Sbjct: 192 GCIFYEMSTGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEFKSYNYPKYRA--- 248

Query: 463 TDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA 502
            D   N  P+L+++  E    L++KLL+ +   R SAE A
Sbjct: 249 -DCLHNHAPRLDSDGAE----LLSKLLQFEGRKRISAEEA 283

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may play a role in regulating neurite outgrowth. It can also associate with Trap (Tudor repeat associator with PCTAIRE-2), a physiological partner of PCTAIRE-2; with p11, a small dimeric protein with similarity to S100; and with 14-3-3 proteins, mediators of phosphorylation-dependent interactions in many different proteins. Length = 301

>gnl|CDD|132969 cd06638, STKc_myosinIIIA, Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

 Score = 47.3 bits (112), Expect = 9e-06
 Identities = 48/188 (25%), Positives = 79/188 (42%), Gaps = 32/188 (17%)

Query: 324 TDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQ 383
           TDL     +R  ++       +  + L G+ HL++++T HRD+K +NILL      T   
Sbjct: 108 TDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHVNKTIHRDVKGNNILL-----TTEGG 162

Query: 384 LVITDFGSSYTNKSGLSMQYSSADIELGGNVAL---MAPEVALATPGLFSFVNYSKSDAW 440
           + + DF        G+S Q +S  +    +V     MAPEV      L S  + ++ D W
Sbjct: 163 VKLVDF--------GVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQLDSTYD-ARCDVW 213

Query: 441 TAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRR----------LVAKLLE 490
           + G  A E+   D P         + + AL ++  N P  + +           + K L 
Sbjct: 214 SLGITAIELGDGDPPLADL-----HPMRALFKIPRNPPPTLHQPELWSNEFNDFIRKCLT 268

Query: 491 NDPSDRPS 498
            D   RP+
Sbjct: 269 KDYEKRPT 276

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear hair cells. It is localized to the distal ends of actin-bundled structures. Mutations in human myosin IIIA are responsible for progressive nonsyndromic hearing loss. Human myosin IIIA possesses ATPase and kinase activities, and the ability to move actin filaments in a motility assay. It may function as a cellular transporter capable of moving along actin bundles in sensory cells. Length = 286

>gnl|CDD|132970 cd06639, STKc_myosinIIIB, Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

 Score = 47.3 bits (112), Expect = 1e-05
 Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 33/168 (19%)

Query: 344 LLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQY 403
           +L+  LL G+ HL+ +R  HRD+K +NILL      T   + + DF        G+S Q 
Sbjct: 133 ILYGALL-GLQHLHNNRIIHRDVKGNNILL-----TTEGGVKLVDF--------GVSAQL 178

Query: 404 SSADIELGGNVAL---MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSA 460
           +S  +    +V     MAPEV +A    + +   ++ D W+ G  A E+   D P +   
Sbjct: 179 TSTRLRRNTSVGTPFWMAPEV-IACEQQYDYSYDARCDVWSLGITAIELGDGDPPLFDM- 236

Query: 461 RNTDYEVNALPQLNTNVPEVMR----------RLVAKLLENDPSDRPS 498
               + V  L ++  N P  +             +++ L  D   RPS
Sbjct: 237 ----HPVKTLFKIPRNPPPTLLHPEKWCRSFNHFISQCLIKDFEARPS 280

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also present in the brain and testis. The human class IIIB myosin gene maps to a region that overlaps the locus for Bardet-Biedl syndrome, which is characterized by dysmorphic extremities, retinal dystrophy, obesity, male hypogenitalism, and renal abnormalities. Length = 291

>gnl|CDD|165478 PHA03212, PHA03212, serine/threonine kinase US3; Provisional

 Score = 47.7 bits (113), Expect = 1e-05
 Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 31/165 (18%)

Query: 300 PARLNPTGGYGRNMSLFILMKKYNTDLRNYLRER-----CAQLSMHERVLLFTQLLEGVT 354
           P+ +   G +  N    +++ +Y TDL  YL  +     C  L++   VL        + 
Sbjct: 143 PSIIQLKGTFTYNKFTCLILPRYKTDLYCYLAAKRNIAICDILAIERSVL------RAIQ 196

Query: 355 HLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSS-YTNKSGLSMQYSSADIELGGN 413
           +L+ +R  HRD+K++NI ++   D     + + DFG++ +      +  Y  A     G 
Sbjct: 197 YLHENRIIHRDIKAENIFINHPGD-----VCLGDFGAACFPVDINANKYYGWA-----GT 246

Query: 414 VALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEI-FGHDNPF 456
           +A  APE+    P       Y  + D W+AG V +E+   HD+ F
Sbjct: 247 IATNAPELLARDP-------YGPAVDIWSAGIVLFEMATCHDSLF 284

Length = 391

>gnl|CDD|143356 cd07851, STKc_p38, Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 59/219 (26%), Positives = 92/219 (42%), Gaps = 67/219 (30%)

Query: 324 TDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQ 383
            DL N ++  C +LS      L  Q+L G+ +++     HRDLK  NI ++  ED  C +
Sbjct: 104 ADLNNIVK--CQKLSDDHIQFLVYQILRGLKYIHSAGIIHRDLKPSNIAVN--ED--C-E 156

Query: 384 LVITDFGSSYTNKSGLSMQYSSADIELGGNVALM---APEVALATPGLFSFVNYSKS-DA 439
           L I DF        GL+      D E+ G VA     APE+      + ++++Y+++ D 
Sbjct: 157 LKILDF--------GLARH---TDDEMTGYVATRWYRAPEI------MLNWMHYNQTVDI 199

Query: 440 WTAGTVAYE------IFGHDNPFYQ----------------------SARNTDYEVNALP 471
           W+ G +  E      +F   +   Q                      SARN  Y + +LP
Sbjct: 200 WSVGCIMAELLTGKTLFPGSDHIDQLKRIMNLVGTPDEELLQKISSESARN--Y-IQSLP 256

Query: 472 QL-NTNVPEVMRR-------LVAKLLENDPSDRPSAELA 502
           Q+   +  EV          L+ K+L  DP  R +A  A
Sbjct: 257 QMPKKDFKEVFSGANPLAIDLLEKMLVLDPDKRITAAEA 295

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. p38 substrates include other protein kinases and factors that regulate transcription, nuclear export, mRNA stability and translation. p38 kinases are drug targets for the inflammatory diseases psoriasis, rheumatoid arthritis, and chronic pulmonary disease. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta, which show varying substrate specificity and expression patterns. p38alpha and p38beta are ubiquitously expressed, p38gamma is predominantly found in skeletal muscle, and p38delta is found in the heart, lung, testis, pancreas, and small intestine. Length = 343

>gnl|CDD|133178 cd05046, PTK_CCK4, Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 55/200 (27%), Positives = 84/200 (42%), Gaps = 43/200 (21%)

Query: 325 DLRNYLR--------ERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCS 376
           DL+ +LR         +   LS  ++V L TQ+  G+ HL+  R  HRDL + N L+  S
Sbjct: 94  DLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSNARFVHRDLAARNCLV--S 151

Query: 377 EDN----TCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV 432
                  +   L    + S Y        +  +A I L      +APE        FS  
Sbjct: 152 SQREVKVSLLSLSKDVYNSEY-------YKLRNALIPL----RWLAPEAVQE--DDFS-- 196

Query: 433 NYSKSDAWTAGTVAYEIFGHDN-PFYQSARNTDYEVNALPQ-------LNTNVPEVMRRL 484
             +KSD W+ G + +E+F     PFY     +D EV    Q       +    P  + +L
Sbjct: 197 --TKSDVWSFGVLMWEVFTQGELPFYGL---SDEEVLNRLQAGKLELPVPEGCPSRLYKL 251

Query: 485 VAKLLENDPSDRPS-AELAA 503
           + +    +P DRPS +EL +
Sbjct: 252 MTRCWAVNPKDRPSFSELVS 271

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is still unknown. Other pseudokinases such as HER3 rely on the activity of partner RTKs. Length = 275

>gnl|CDD|133233 cd05102, PTKc_VEGFR3, Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 50/176 (28%), Positives = 75/176 (42%), Gaps = 37/176 (21%)

Query: 337 LSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNK 396
           L+M + +    Q+  G+  L   +  HRDL + NILL  SE+N    + I DFG +    
Sbjct: 171 LTMEDLICYSFQVARGMEFLASRKCIHRDLAARNILL--SENNV---VKICDFGLARD-- 223

Query: 397 SGLSMQYSSADIELGGNVAL----MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGH 452
                 Y   D    G+  L    MAPE       +F  V  ++SD W+ G + +EIF  
Sbjct: 224 -----IYKDPDYVRKGSARLPLKWMAPE------SIFDKVYTTQSDVWSFGVLLWEIFSL 272

Query: 453 ----------DNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS 498
                     +  F Q  R  D      P+  T  PE+  R++    + DP +RP+
Sbjct: 273 GASPYPGVQINEEFCQ--RLKDGTRMRAPENAT--PEI-YRIMLACWQGDPKERPT 323

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. VEGFR3 preferentially binds the ligands VEGFC and VEGFD. VEGFR3 is essential for lymphatic endothelial cell (EC) development and function. It has been shown to regulate adaptive immunity during corneal transplantation. VEGFR3 is upregulated on blood vascular ECs in pathological conditions such as vascular tumors and the periphery of solid tumors. It plays a role in cancer progression and lymph node metastasis. Missense mutations in the VEGFR3 gene are associated with primary human lymphedema. Length = 338

>gnl|CDD|173677 cd05586, STKc_Sck1_like, Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 45/163 (27%), Positives = 70/163 (42%), Gaps = 24/163 (14%)

Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
           +L+  + HL+ +   +RDLK +NILLD +       + + DFG S  N +      +   
Sbjct: 104 ELVLALEHLHKYDIVYRDLKPENILLDATG-----HIALCDFGLSKANLTDNKTTNT--- 155

Query: 408 IELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFY-----QSAR 461
               G    +APEV L   G      Y+K  D W+ G + +E+    +PFY     Q  R
Sbjct: 156 --FCGTTEYLAPEVLLDEKG------YTKHVDFWSLGVLVFEMCCGWSPFYAEDTQQMYR 207

Query: 462 NTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAAT 504
           N  +     P+    + +  R+ V  LL  +P  R  A   A 
Sbjct: 208 NIAFGKVRFPK--NVLSDEGRQFVKGLLNRNPQHRLGAHRDAV 248

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of yeast to environmental changes. Length = 330

>gnl|CDD|173720 cd05631, STKc_GRK4, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

 Score = 46.5 bits (110), Expect = 2e-05
 Identities = 42/165 (25%), Positives = 64/165 (38%), Gaps = 28/165 (16%)

Query: 341 ERVLLFT-QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGL 399
           +R + +  +L  G+  L   R  +RDLK +NILLD         + I+D         GL
Sbjct: 102 QRAIFYAAELCCGLEDLQRERIVYRDLKPENILLD-----DRGHIRISDL--------GL 148

Query: 400 SMQYSSADIELG--GNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFY 457
           ++Q    +   G  G V  MAPEV       FS       D W  G + YE+    +PF 
Sbjct: 149 AVQIPEGETVRGRVGTVGYMAPEVINNEKYTFS------PDWWGLGCLIYEMIQGQSPFR 202

Query: 458 QSARNTDYE------VNALPQLNTNVPEVMRRLVAKLLENDPSDR 496
           +       E           + +    E  + +   LL  +P +R
Sbjct: 203 KRKERVKREEVDRRVKEDQEEYSEKFSEDAKSICRMLLTKNPKER 247

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found in the testis, but is also present in the cerebellum and kidney. It is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK4 polymorphisms are associated with hypertension and salt sensitivity, as they cause hyperphosphorylation, desensitization, and internalization of the dopamine 1 (D1) receptor while increasing the expression of the angiotensin II type 1 receptor. GRK4 plays a crucial role in the D1 receptor regulation of sodium excretion and blood pressure. Length = 285

>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 59/246 (23%), Positives = 94/246 (38%), Gaps = 73/246 (29%)

Query: 303 LNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTA 362
           L P G   ++  ++++M    +DL + +         H R  L+ QLL G+ +++     
Sbjct: 73  LRPPGADFKD--VYVVMDLMESDLHHIIHSDQPLTEEHIRYFLY-QLLRGLKYIHSANVI 129

Query: 363 HRDLKSDNILL--DCSEDNTCPQLVITDFG------SSYTNKSGLSMQYSSADIELGGNV 414
           HRDLK  N+L+  DC        L I DFG      SS T       +Y          V
Sbjct: 130 HRDLKPSNLLVNEDCE-------LRIGDFGMARGLSSSPTEHKYFMTEY----------V 172

Query: 415 ALM---APEVALATPGLFSFVNYSKS-DAWTAGTVAYE------IFGHDNPFYQ------ 458
           A     APE+      L S   Y+ + D W+ G +  E      +F   N  +Q      
Sbjct: 173 ATRWYRAPEL------LLSLPEYTTAIDMWSVGCIFAEMLGRRQLFPGKNYVHQLKLILS 226

Query: 459 --------------SARNTDYEVNALPQ-----LNTNVPEV---MRRLVAKLLENDPSDR 496
                         S R   Y +  LP+      +   P+       L++++L+ DP +R
Sbjct: 227 VLGSPSEEVLNRIGSDRVRKY-IQNLPRKQPVPWSKIFPKASPEALDLLSQMLQFDPEER 285

Query: 497 PSAELA 502
            + E A
Sbjct: 286 ITVEQA 291

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the MAP2K MEK5, which in turn is regulated by the MAP3Ks MEKK2 and MEKK3. Activated ERK5 phosphorylates its targets including myocyte enhancer factor 2 (MEF2), Sap1a, c-Myc, and RSK. It plays a role in EGF-induced cell proliferation during the G1/S phase transition. Studies on knockout mice revealed that ERK5 is essential for cardiovascular development and plays an important role in angiogenesis. It is also critical for neural differentiation and survival. The ERK5 pathway has been implicated in the pathogenesis of many diseases including cancer, cardiac hypertrophy, and atherosclerosis. Length = 334

>gnl|CDD|173676 cd05585, STKc_YPK1_like, Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

 Score = 46.9 bits (111), Expect = 2e-05
 Identities = 41/152 (26%), Positives = 61/152 (40%), Gaps = 20/152 (13%)

Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
           +LL  + +L+     +RDLK +NILLD         + + DFG        L+M+     
Sbjct: 101 ELLCALENLHKFNVIYRDLKPENILLDYQG-----HIALCDFG-----LCKLNMKDDDKT 150

Query: 408 IELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYE 466
               G    +APE       L     Y+K+ D WT G + YE+     PFY    N  Y 
Sbjct: 151 NTFCGTPEYLAPE-------LLLGHGYTKAVDWWTLGVLLYEMLTGLPPFYDENVNEMYR 203

Query: 467 --VNALPQLNTNVPEVMRRLVAKLLENDPSDR 496
             +    +         + L+  LL  DP+ R
Sbjct: 204 KILQEPLRFPDGFDRDAKDLLIGLLSRDPTRR 235

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It plays a role in cell growth and sexual development. Length = 312

>gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 56/242 (23%), Positives = 89/242 (36%), Gaps = 66/242 (27%)

Query: 271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYN----TDL 326
           HPN+V  +  F +                            N  L+I+M         + 
Sbjct: 68  HPNIVRYYKTFLE----------------------------NDRLYIVMDLIEGAPLGEH 99

Query: 327 RNYLRERCAQLSMHERVL-LFTQLLEGVTHLNMH-RTAHRDLKSDNILLDCSEDNTCPQL 384
            N L+E+  + +  ER+  +F Q++  + +L+   R  HRDL  +NI+L   ED+   ++
Sbjct: 100 FNSLKEKKQRFT-EERIWNIFVQMVLALRYLHKEKRIVHRDLTPNNIML--GEDD---KV 153

Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAG 443
            ITDFG +   K   S   S       G +    PE+    P       Y  K+D W  G
Sbjct: 154 TITDFGLA-KQKQPESKLTSVV-----GTILYSCPEIVKNEP-------YGEKADVWAFG 200

Query: 444 TVAYEIFGHDNPFYQSAR--------NTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSD 495
            + Y++     PFY +             YE    P       E +  ++   L  D   
Sbjct: 201 CILYQMCTLQPPFYSTNMLSLATKIVEAVYE----PLPEGMYSEDVTDVITSCLTPDAEA 256

Query: 496 RP 497
           RP
Sbjct: 257 RP 258

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. Length = 269

>gnl|CDD|132975 cd06644, STKc_STK10_LOK, Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

 Score = 46.6 bits (110), Expect = 2e-05
 Identities = 46/158 (29%), Positives = 67/158 (42%), Gaps = 18/158 (11%)

Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
           Q+LE + +L+  +  HRDLK+ N+LL    D     + + DFG S  N   L  + S   
Sbjct: 118 QMLEALQYLHSMKIIHRDLKAGNVLLTLDGD-----IKLADFGVSAKNVKTLQRRDS--- 169

Query: 408 IELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-----HD-NPFYQSAR 461
               G    MAPEV +      +  +Y K+D W+ G    E+       H+ NP     +
Sbjct: 170 --FIGTPYWMAPEVVMCETMKDTPYDY-KADIWSLGITLIEMAQIEPPHHELNPMRVLLK 226

Query: 462 NTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSA 499
               E   L Q +    E  R  +   L+  P  RPSA
Sbjct: 227 IAKSEPPTLSQPSKWSME-FRDFLKTALDKHPETRPSA 263

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. Length = 292

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 42/166 (25%)

Query: 313 MSLFILMKKYNTDLRNYLR-------------ERCAQLSMHERVLLFTQLLEGVTHLNMH 359
           + +F  M+  + DL  +LR                 +L++ + + +  Q+  G+ +L   
Sbjct: 84  IMVFEYME--HGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLASQ 141

Query: 360 RTAHRDLKSDNILLDCSEDNTCPQLV--ITDFGSSYTNKSGLSMQYSSADIELGGNVAL- 416
              HRDL + N L+          LV  I DFG S          Y++    +GG+  L 
Sbjct: 142 HFVHRDLATRNCLVGYD-------LVVKIGDFGMSRD-------VYTTDYYRVGGHTMLP 187

Query: 417 ---MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGH-DNPFYQ 458
              M PE  +     F+    ++SD W+ G V +EIF +   P+Y 
Sbjct: 188 IRWMPPESIMY--RKFT----TESDVWSFGVVLWEIFTYGKQPWYG 227

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein Tyrosine Kinases

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 55/196 (28%), Positives = 80/196 (40%), Gaps = 27/196 (13%)

Query: 313 MSLFILMKKYNTDLRNYL-RERCAQLSMH---ERVLLF-TQLLEGVTHLNMHRTAHRDLK 367
           M +   MK  + DL ++L   R   L      + +L F   +  G+ +L+     HRDL 
Sbjct: 83  MVILPFMK--HGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSNRNFIHRDLA 140

Query: 368 SDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG 427
           + N +L   ED T   + + DF        GLS +  S D    G +A M P   +A   
Sbjct: 141 ARNCMLR--EDMT---VCVADF--------GLSKKIYSGDYYRQGRIAKM-PVKWIAIES 186

Query: 428 LFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD-YEV----NALPQLNTNVPEVMR 482
           L   V  SKSD W  G   +EI       Y    N + Y+     N L Q   +  + + 
Sbjct: 187 LADRVYTSKSDVWAFGVTMWEIATRGQTPYPGVENHEIYDYLRHGNRLKQ-PEDCLDELY 245

Query: 483 RLVAKLLENDPSDRPS 498
            L+      DP DRP+
Sbjct: 246 DLMYSCWRADPKDRPT 261

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellular effects including survival, proliferation, migration, and phagocytosis. They are also associated with several types of cancer as well as inflammatory, autoimmune, vascular, and kidney diseases. Mer is named after its original reported expression pattern (monocytes, epithelial, and reproductive tissues). It is required for the ingestion of apoptotic cells by phagocytes such as macrophages, retinal pigment epithelial cells, and dendritic cells. Mer is also important in maintaining immune homeostasis. Length = 273

>gnl|CDD|143379 cd07874, STKc_JNK3, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

 Score = 46.6 bits (110), Expect = 2e-05
 Identities = 49/161 (30%), Positives = 71/161 (44%), Gaps = 28/161 (17%)

Query: 340 HERV-LLFTQLLEGVTHLNMHRTAHRDLKSDNILL--DCSEDNTCPQLVITDFGSSYTNK 396
           HER+  L  Q+L G+ HL+     HRDLK  NI++  DC+       L I DFG + T  
Sbjct: 118 HERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCT-------LKILDFGLART-- 168

Query: 397 SGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNP 455
           +G S   +   +         APEV L        + Y ++ D W+ G +  E+  H   
Sbjct: 169 AGTSFMMTPYVV----TRYYRAPEVILG-------MGYKENVDIWSVGCIMGEMVRH-KI 216

Query: 456 FYQSARNTDYEVNALPQLNTNVPEVMRRL---VAKLLENDP 493
            +      D     + QL T  PE M++L   V   +EN P
Sbjct: 217 LFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRP 257

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, stroke, sciatic axotomy neural death, and neuronal death due to NGF deprivation, oxidative stress, or exposure to beta-amyloid peptide. This suggests that JNK3 may play roles in the pathogenesis of these diseases. Length = 355

>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 47/186 (25%), Positives = 84/186 (45%), Gaps = 29/186 (15%)

Query: 323 NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 382
           N  L ++LR+   Q ++ + V +   +  G+ +L+     HRDL + NIL++ +      
Sbjct: 89  NGALDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLSEMNYVHRDLAARNILVNSN------ 142

Query: 383 QLV--ITDFG-SSYTNKSGLSMQYSSADIELGGNVAL--MAPEVALATPGLFSFVNY-SK 436
            LV  ++DFG S +         Y+S+   LGG + +   APE         ++  + S 
Sbjct: 143 -LVCKVSDFGLSRFLEDDTSDPTYTSS---LGGKIPIRWTAPEA-------IAYRKFTSA 191

Query: 437 SDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQ-----LNTNVPEVMRRLVAKLLEN 491
           SD W+ G V +E+  +    Y    N D  +NA+ Q        + P  + +L+    + 
Sbjct: 192 SDVWSYGIVMWEVMSYGERPYWDMSNQDV-INAIEQDYRLPPPMDCPTALHQLMLDCWQK 250

Query: 492 DPSDRP 497
           D + RP
Sbjct: 251 DRNARP 256

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269

>gnl|CDD|173688 cd05597, STKc_DMPK_like, Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 48/188 (25%), Positives = 75/188 (39%), Gaps = 40/188 (21%)

Query: 315 LFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLD 374
           L  L+ K+     + L E  A+  + E VL        +  ++     HRD+K DN+LLD
Sbjct: 88  LLTLLSKFE----DRLPEDMARFYLAEMVL-------AIDSVHQLGYVHRDIKPDNVLLD 136

Query: 375 CSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVAL-----MAPEVALATPGLF 429
                    + + DFGS       L +    AD  +  NVA+     ++PE+  A     
Sbjct: 137 -----KNGHIRLADFGSC------LRLL---ADGTVQSNVAVGTPDYISPEILQAMED-- 180

Query: 430 SFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDY-------EVNALPQLNTNVPEVM 481
               Y    D W+ G   YE+   + PFY  +    Y       E    P   T+V E  
Sbjct: 181 GKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHKEHFQFPPDVTDVSEEA 240

Query: 482 RRLVAKLL 489
           + L+ +L+
Sbjct: 241 KDLIRRLI 248

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy, and cardiac conduction defects. The genetic basis for DM1 is the mutational expansion of a CTG repeat in the 3'-UTR of DMPK. DMPK is expressed in skeletal and cardiac muscles, and in central nervous tissues. The functional role of DMPK is not fully understood. It may play a role in the signal transduction and homeostasis of calcium. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKgamma is expressed in heart and skeletal muscles, unlike MRCKalpha and MRCKbeta, which are expressed ubiquitously. Length = 331

>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 52/198 (26%), Positives = 83/198 (41%), Gaps = 37/198 (18%)

Query: 326 LRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLV 385
           L  YL++R  ++ + +   L  Q+  G+ +L      HRDL + N+LL  +      Q  
Sbjct: 82  LLKYLKKR-REIPVSDLKELAHQVAMGMAYLESKHFVHRDLAARNVLL-VNRH----QAK 135

Query: 386 ITDFGSSYTNKSGLSMQYSSADIELGGN--VALMAPEVALATPGLFSFVNY----SKSDA 439
           I+DFG S    +G S  Y +      G   +   APE           +NY    SKSD 
Sbjct: 136 ISDFGMSRALGAG-SDYYRA---TTAGRWPLKWYAPEC----------INYGKFSSKSDV 181

Query: 440 WTAGTVAYEIFGHDNPFYQSARNTDYEVNA-------LPQLNTNVPEVMRRLVAKLLEND 492
           W+ G   +E F +    Y   +    EV A       LP+     P+ +  ++    +  
Sbjct: 182 WSYGVTLWEAFSYGAKPYGEMKGA--EVIAMLESGERLPRPE-ECPQEIYSIMLSCWKYR 238

Query: 493 PSDRPS-AELAATVCQLY 509
           P DRP+ +EL +T  +  
Sbjct: 239 PEDRPTFSELESTFRRDP 256

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257

>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 63/227 (27%), Positives = 93/227 (40%), Gaps = 58/227 (25%)

Query: 311 RNMSLFILMKKYNTDLRNYL---RERCAQLSMHERVLLFT-QLLEGVTHLNMHRTAHRDL 366
           RN+ L +    Y + LR+YL   RER      H ++LL+  Q+ +G+ +L   R  HRDL
Sbjct: 80  RNLRLVMEYLPYGS-LRDYLQKHRERLD----HRKLLLYASQICKGMEYLGSKRYVHRDL 134

Query: 367 KSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP 426
            + NIL++ SE+    ++ I DFG   T       +Y          +   APE    T 
Sbjct: 135 ATRNILVE-SEN----RVKIGDFG--LTKVLPQDKEYYKVREPGESPIFWYAPES--LTE 185

Query: 427 GLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVA 486
             FS      SD W+ G V YE+F +      S ++       +  +  +    M  +V 
Sbjct: 186 SKFS----VASDVWSFGVVLYELFTY------SDKSCSPPAEFMRMMGNDKQGQM--IVY 233

Query: 487 KLLE---------------------------NDPSDRPS-AELAATV 505
            L+E                           NDPS RPS +ELA  V
Sbjct: 234 HLIELLKNNGRLPAPPGCPAEIYAIMKECWNNDPSQRPSFSELALQV 280

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 284

>gnl|CDD|173710 cd05620, STKc_nPKC_delta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

 Score = 46.1 bits (109), Expect = 3e-05
 Identities = 44/185 (23%), Positives = 81/185 (43%), Gaps = 20/185 (10%)

Query: 315 LFILMKKYNT-DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
           LF +M+  N  DL  +++++  +  ++       +++ G+  L+     +RDLK DN++L
Sbjct: 71  LFFVMEFLNGGDLMFHIQDK-GRFDLYRATFYAAEIVCGLQFLHSKGIIYRDLKLDNVML 129

Query: 374 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN 433
           D   D     + I DFG    N  G +   +       G    +APE+       FS   
Sbjct: 130 D--RDG---HIKIADFGMCKENVFGDNRAST-----FCGTPDYIAPEILQGLKYTFSV-- 177

Query: 434 YSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNAL--PQLNTNVPEVMRRLVAKLLEN 491
               D W+ G + YE+    +PF+    +  +E   +  P     + +  + ++ KL E 
Sbjct: 178 ----DWWSFGVLLYEMLIGQSPFHGDDEDELFESIRVDTPHYPRWITKESKDILEKLFER 233

Query: 492 DPSDR 496
           DP+ R
Sbjct: 234 DPTRR 238

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. It slows down cell proliferation, inducing cell cycle arrest and enhancing cell differentiation. PKC-delta is also involved in the regulation of transcription as well as immune and inflammatory responses. It plays a central role in the genotoxic stress response that leads to DNA damaged-induced apoptosis. Length = 316

>gnl|CDD|143377 cd07872, STKc_PCTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

 Score = 45.8 bits (108), Expect = 3e-05
 Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 17/137 (12%)

Query: 314 SLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
           SL ++ +  + DL+ Y+ +    +SMH   +   Q+L G+ + +  +  HRDLK  N+L+
Sbjct: 78  SLTLVFEYLDKDLKQYMDDCGNIMSMHNVKIFLYQILRGLAYCHRRKVLHRDLKPQNLLI 137

Query: 374 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN 433
                N   +L + DFG +   KS  +  YS+  + L        P+V L +        
Sbjct: 138 -----NERGELKLADFGLARA-KSVPTKTYSNEVVTLW----YRPPDVLLGSS------E 181

Query: 434 YSKS-DAWTAGTVAYEI 449
           YS   D W  G + +E+
Sbjct: 182 YSTQIDMWGVGCIFFEM 198

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play a role in regulating mitochondrial function in neurons. Length = 309

>gnl|CDD|173635 cd05054, PTKc_VEGFR, Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 47/175 (26%), Positives = 73/175 (41%), Gaps = 33/175 (18%)

Query: 336 QLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTN 395
            L++ + +    Q+  G+  L   +  HRDL + NILL  SE+N    + I DFG +   
Sbjct: 169 PLTLEDLISYSFQVARGMEFLASRKCIHRDLAARNILL--SENNV---VKICDFGLARD- 222

Query: 396 KSGLSMQYSSADIELGGNVAL----MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG 451
                  Y   D    G+  L    MAPE       +F  V  ++SD W+ G + +EIF 
Sbjct: 223 ------IYKDPDYVRKGDARLPLKWMAPE------SIFDKVYTTQSDVWSFGVLLWEIFS 270

Query: 452 HDNPFYQSARNTDYEVNAL--------PQLNTNVPEVMRRLVAKLLENDPSDRPS 498
                Y   +  +     L        P+  T  PE+   ++     N+P DRP+
Sbjct: 271 LGASPYPGVQIDEEFCRRLKEGTRMRAPEYAT--PEIYSIMLD-CWHNNPEDRPT 322

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. There are five VEGF ligands in mammals, which bind, in an overlapping pattern to the three VEGFRs, which can form homo or heterodimers. VEGFRs regulate the cardiovascular system. They are critical for vascular development during embryogenesis and blood vessel formation in adults. They induce cellular functions common to other growth factor receptors such as cell migration, survival, and proliferation. VEGFR1 binds VEGFA, VEGFB, and placenta growth factor (PLGF). It regulates monocyte and macrophage migration, vascular permeability, haematopoiesis, and the recruitment of haematopietic progenitor cells from the bone marrow. Length = 337

>gnl|CDD|132982 cd06651, STKc_MEKK3, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

 Score = 45.4 bits (107), Expect = 4e-05
 Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 40/168 (23%)

Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNK----SGLSMQY 403
           Q+LEG+++L+ +   HRD+K  NIL D + +     + + DFG+S   +    SG  ++ 
Sbjct: 114 QILEGMSYLHSNMIVHRDIKGANILRDSAGN-----VKLGDFGASKRLQTICMSGTGIR- 167

Query: 404 SSADIELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARN 462
                 + G    M+PEV        S   Y  K+D W+ G    E+     P+      
Sbjct: 168 -----SVTGTPYWMSPEV-------ISGEGYGRKADVWSLGCTVVEMLTEKPPW------ 209

Query: 463 TDYEVNAL----------PQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
            +YE  A           PQL +++ E  R  +  +   +   RPSAE
Sbjct: 210 AEYEAMAAIFKIATQPTNPQLPSHISEHARDFLGCIFV-EARHRPSAE 256

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. In addition, MEKK3 is involved in interleukin-1 receptor and Toll-like receptor 4 signaling. It is also a specific regulator of the proinflammatory cytokines IL-6 and GM-CSF in some immune cells. MEKK3 also regulates calcineurin, which plays a critical role in T cell activation, apoptosis, skeletal myocyte differentiation, and cardiac hypertrophy. Length = 266

>gnl|CDD|173698 cd05607, STKc_GRK7, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

 Score = 45.3 bits (107), Expect = 4e-05
 Identities = 41/174 (23%), Positives = 67/174 (38%), Gaps = 38/174 (21%)

Query: 341 ERVLLFT-QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGL 399
           ERV+ ++ Q+  G+ HL+     +RD+K +N+LLD           ++D G +   K G 
Sbjct: 95  ERVIHYSAQITCGILHLHSMDIVYRDMKPENVLLDDQG-----NCRLSDLGLAVELKDGK 149

Query: 400 SMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQ 458
           ++       +  G    MAPE+    P       YS   D +  G   YE+     PF  
Sbjct: 150 TIT------QRAGTNGYMAPEILKEEP-------YSYPVDWFAMGCSIYEMVAGRTPFKD 196

Query: 459 SARNTDYEVNALPQLNTNVPEVMRRLVAK--LLENDPSDRPSAELAATVCQLYL 510
                  E            E+ RR +      E+      S +    +C+L+L
Sbjct: 197 HKEKVAKE------------ELKRRTLEDEVKFEHQNFTEESKD----ICRLFL 234

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual group of GRKs. It is primarily found in the retina and plays a role in the regulation of opsin light receptors. GRK7 is located in retinal cone outer segments and plays an important role in regulating photoresponse of the cones. Length = 277

>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

 Score = 45.2 bits (107), Expect = 4e-05
 Identities = 37/165 (22%), Positives = 59/165 (35%), Gaps = 26/165 (15%)

Query: 347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSA 406
            +++ GV  L+     HRD+K +N+L+D +       L +TDFG S            + 
Sbjct: 104 AEVVLGVEDLHQRGIIHRDIKPENLLIDQTG-----HLKLTDFGLS-------RNGLENK 151

Query: 407 DIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQS------A 460
                G    +APE  L             SD W+ G V +E      PF+         
Sbjct: 152 KFV--GTPDYLAPETILGVGDD------KMSDWWSLGCVIFEFLFGYPPFHAETPDAVFD 203

Query: 461 RNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATV 505
                 +N   ++          L+ +LL  DP+ R  A     +
Sbjct: 204 NILSRRINWPEEVKEFCSPEAVDLINRLLCMDPAKRLGANGYQEI 248

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a downstream effector of PKA and regulates entry into stationary phase (G0). Thus, it plays a crucial role in regulating yeast proliferation, differentiation, and aging. Cek1 may facilitate progression of mitotic anaphase. Length = 260

>gnl|CDD|173675 cd05584, STKc_p70S6K, Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

 Score = 45.6 bits (108), Expect = 4e-05
 Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 22/146 (15%)

Query: 355 HLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNV 414
           HL+     +RDLK +NILLD         + +TDFG    +    ++ ++       G +
Sbjct: 115 HLHQQGIIYRDLKPENILLDAQG-----HVKLTDFGLCKESIHEGTVTHT-----FCGTI 164

Query: 415 ALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLN 474
             MAPE+ L   G    V     D W+ G + Y++     PF  +A N    ++ + +  
Sbjct: 165 EYMAPEI-LMRSGHGKAV-----DWWSLGALMYDMLTGAPPF--TAENRKKTIDKILKGK 216

Query: 475 TNVPEVM----RRLVAKLLENDPSDR 496
            N+P  +    R L+ KLL+ +PS R
Sbjct: 217 LNLPPYLTPEARDLLKKLLKRNPSSR 242

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the insulin receptor substrate IRS-1, among others. Mammals contain two isoforms of p70S6K, named S6K1 and S6K2 (or S6K-beta). Length = 323

>gnl|CDD|173652 cd05100, PTKc_FGFR3, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

 Score = 45.8 bits (108), Expect = 4e-05
 Identities = 46/164 (28%), Positives = 74/164 (45%), Gaps = 30/164 (18%)

Query: 303 LNPTGGYGRNMSLFILMKKYNT-DLRNYLRER-----------C----AQLSMHERVLLF 346
           +N  G   ++  L++L++  +  +LR YLR R           C     QL+  + V   
Sbjct: 81  INLLGACTQDGPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCA 140

Query: 347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSA 406
            Q+  G+ +L   +  HRDL + N+L+  +EDN    + I DFG +   +   ++ Y   
Sbjct: 141 YQVARGMEYLASQKCIHRDLAARNVLV--TEDNV---MKIADFGLA---RDVHNIDYYKK 192

Query: 407 DIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIF 450
                  V  MAPE       LF  V   +SD W+ G + +EIF
Sbjct: 193 TTNGRLPVKWMAPE------ALFDRVYTHQSDVWSFGVLLWEIF 230

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Many FGFR3 splice variants have been reported with the IIIb and IIIc isoforms being the predominant forms. FGFR3 IIIc is the isoform expressed in chondrocytes, the cells affected in dwarfism, while IIIb is expressed in epithelial cells. FGFR3 ligands include FGF1, FGF2, FGF4, FGF8, FGF9, and FGF23. It is a negative regulator of long bone growth. In the cochlear duct and in the lens, FGFR3 is involved in differentiation while it appears to have a role in cell proliferation in epithelial cells. Germline mutations in FGFR3 are associated with skeletal disorders including several forms of dwarfism. Some missense mutations are associated with multiple myeloma and carcinomas of the bladder and cervix. Overexpression of FGFR3 is found in thyroid carcinoma. Length = 334

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 26/131 (19%)

Query: 326 LRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLV 385
           L +Y+R     +     +    Q+ +G+++L   R  HRDL + N+L+        PQ V
Sbjct: 95  LLDYVRNHKDNIGSQYLLNWCVQIAKGMSYLEEKRLVHRDLAARNVLVK------TPQHV 148

Query: 386 -ITDFGSSYTNKSGLSMQYSSADIEL---GGNVAL--MAPEVALATPGLFSFVNYSKSDA 439
            ITDF        GL+      + E    GG V +  MA E       +   +   KSD 
Sbjct: 149 KITDF--------GLAKLLDVDEKEYHAEGGKVPIKWMALE------SILHRIYTHKSDV 194

Query: 440 WTAGTVAYEIF 450
           W+ G   +E+ 
Sbjct: 195 WSYGVTVWELM 205

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|133186 cd05055, PTKc_PDGFR, Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

 Score = 45.2 bits (107), Expect = 5e-05
 Identities = 52/198 (26%), Positives = 79/198 (39%), Gaps = 56/198 (28%)

Query: 325 DLRNYLRERCAQLSMHERVLLFT-QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQ 383
           DL N+LR +       E +L F+ Q+ +G+  L      HRDL + N+LL      T  +
Sbjct: 125 DLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNVLL------THGK 178

Query: 384 LV-ITDFG--------SSYTNKSGLSMQYSSADIELGGNVAL----MAPEVALATPGLFS 430
           +V I DFG        S+Y  K               GN  L    MAPE       +F+
Sbjct: 179 IVKICDFGLARDIMNDSNYVVK---------------GNARLPVKWMAPE------SIFN 217

Query: 431 FVNYSKSDAWTAGTVAYEIFG----------HDNPFYQSARNTDYEVNALPQLNTNVPEV 480
            V   +SD W+ G + +EIF            D+ FY+  +   Y +         + ++
Sbjct: 218 CVYTFESDVWSYGILLWEIFSLGSNPYPGMPVDSKFYKLIKE-GYRMAQPEHAPAEIYDI 276

Query: 481 MRRLVAKLLENDPSDRPS 498
           M+         DP  RP+
Sbjct: 277 MKTCWDA----DPLKRPT 290

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR subfamily receptors are important in the development of a variety of cells. PDGFRs are expressed in a many cells including fibroblasts, neurons, endometrial cells, mammary epithelial cells, and vascular smooth muscle cells. PDGFR signaling is critical in normal embryonic development, angiogenesis, and wound healing. PDGFRs transduce mitogenic signals for connective tissue cells and are important for cell shape and motility. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. Mammalian FLT3 plays an important role in the survival, proliferation, and differentiation of stem cells. Length = 302

>gnl|CDD|143344 cd07839, STKc_CDK5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

 Score = 44.7 bits (106), Expect = 6e-05
 Identities = 56/217 (25%), Positives = 79/217 (36%), Gaps = 61/217 (28%)

Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           DL+ Y       +          QLL+G+   + H   HRDLK  N+L+     N   +L
Sbjct: 84  DLKKYFDSCNGDIDPEIVKSFMFQLLKGLAFCHSHNVLHRDLKPQNLLI-----NKNGEL 138

Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVAL--MAPEVALATPGLFSFVNYSKS-DAWT 441
            + DFG       G+ ++  SA++     V L    P+V      LF    YS S D W+
Sbjct: 139 KLADFG--LARAFGIPVRCYSAEV-----VTLWYRPPDV------LFGAKLYSTSIDMWS 185

Query: 442 AGTVAYE-----------------------IFGH-------------DNPFYQSARNTDY 465
           AG +  E                       + G              D   Y     T  
Sbjct: 186 AGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEESWPGVSKLPDYKPYPMYPATTS 245

Query: 466 EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA 502
            VN +P+LN+      R L+  LL  +P  R SAE A
Sbjct: 246 LVNVVPKLNST----GRDLLQNLLVCNPVQRISAEEA 278

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also important in synaptic plasticity and learning. CDK5 also participates in protecting against cell death and promoting angiogenesis. Impaired CDK5 activity is implicated in Alzheimer's disease, amyotrophic lateral sclerosis, Parkinson's disease, Huntington's disease and acute neuronal injury. Length = 284

>gnl|CDD|173746 cd07850, STKc_JNK, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

 Score = 45.1 bits (107), Expect = 6e-05
 Identities = 49/167 (29%), Positives = 67/167 (40%), Gaps = 40/167 (23%)

Query: 340 HERV-LLFTQLLEGVTHLNMHRTAHRDLKSDNILL--DCSEDNTCPQLVITDFGSSYTNK 396
           HER+  L  Q+L G+ HL+     HRDLK  NI++  DC+       L I DFG + T  
Sbjct: 117 HERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCT-------LKILDFGLARTAG 169

Query: 397 SGLSM------QYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEI 449
           +   M      +Y              APEV L          Y ++ D W+ G +  E+
Sbjct: 170 TSFMMTPYVVTRY------------YRAPEVILGMG-------YKENVDIWSVGCIMGEM 210

Query: 450 FGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRL---VAKLLENDP 493
                 F     + D     + QL T   E M RL   V   +EN P
Sbjct: 211 IRGTVLF-PGTDHIDQWNKIIEQLGTPSDEFMSRLQPTVRNYVENRP 256

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3) that are alternatively spliced to produce at least 10 isoforms. JNKs are specifically activated by the MAPK kinases MKK4 and MKK7, which are in turn activated by upstream MAPK kinase kinases as a result of different stimuli including stresses such as ultraviolet (UV) irradiation, hyperosmolarity, heat shock, or cytokines. JNKs activate a large number of different substrates based on specific stimulus, cell type, and cellular condition, and may be implicated in seemingly contradictory functions. Length = 353

>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

 Score = 44.9 bits (106), Expect = 6e-05
 Identities = 45/164 (27%), Positives = 69/164 (42%), Gaps = 29/164 (17%)

Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVIT--DFG-SSYTNKSGLSMQYS 404
           Q+L+GV +L+ +   HRD+K +N++L        P  +I   DFG +      GL   +S
Sbjct: 110 QILDGVAYLHNNCVVHRDIKGNNVML-------MPNGIIKLIDFGCARRLAWVGLHGTHS 162

Query: 405 SADIELGGNVALMAPEVALATPGLFSFVNYS----KSDAWTAGTVAYEIFGHDNPFYQSA 460
           +    + G    MAPEV          +N S    KSD W+ G   +E+     P     
Sbjct: 163 NMLKSMHGTPYWMAPEV----------INESGYGRKSDIWSIGCTVFEMATGKPPLASMD 212

Query: 461 R-NTDYEVNA----LPQLNTNVPEVMRRLVAKLLENDPSDRPSA 499
           R    + + A    +P+L  +        V   L  D  +RPSA
Sbjct: 213 RLAAMFYIGAHRGLMPRLPDSFSAAAIDFVTSCLTRDQHERPSA 256

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265

>gnl|CDD|132990 cd06659, STKc_PAK6, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

 Score = 44.6 bits (105), Expect = 7e-05
 Identities = 40/162 (24%), Positives = 73/162 (45%), Gaps = 31/162 (19%)

Query: 349 LLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADI 408
           +L+ + +L+     HRD+KSD+ILL         ++ ++DFG        +  + S    
Sbjct: 126 VLQALCYLHSQGVIHRDIKSDSILLTLDG-----RVKLSDFGFCAQISKDVPKRKS---- 176

Query: 409 ELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVN 468
            L G    MAPEV   TP        ++ D W+ G +  E+   + P++     +D  V 
Sbjct: 177 -LVGTPYWMAPEVISRTP------YGTEVDIWSLGIMVIEMVDGEPPYF-----SDSPVQ 224

Query: 469 ALPQLNTNVP----------EVMRRLVAKLLENDPSDRPSAE 500
           A+ +L  + P           V+R  + ++L  +P +R +A+
Sbjct: 225 AMKRLRDSPPPKLKNAHKISPVLRDFLERMLTREPQERATAQ 266

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role in stress responses through its activation by the mitogen-activated protein kinase (MAPK) p38 and MAPK kinase 6 (MKK6) pathway. PAK6 is highly expressed in the brain. It is not required for viability, but together with PAK5, it is required for normal levels of locomotion and activity, and for learning and memory. Increased expression of PAK6 is found in primary and metastatic prostate cancer. PAK6 may play a role in the regulation of motility. Length = 297

>gnl|CDD|173642 cd05075, PTKc_Axl, Catalytic domain of the Protein Tyrosine Kinase, Axl

 Score = 44.6 bits (105), Expect = 7e-05
 Identities = 46/163 (28%), Positives = 69/163 (42%), Gaps = 20/163 (12%)

Query: 343 VLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQ 402
           V   T +  G+ +L+     HRDL + N +L+    N C    + DF        GLS +
Sbjct: 115 VKFMTDIASGMEYLSSKSFIHRDLAARNCMLN-ENMNVC----VADF--------GLSKK 161

Query: 403 YSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARN 462
             + D    G +A M P   +A   L   V  +KSD W+ G   +EI       Y    N
Sbjct: 162 IYNGDYYRQGRIAKM-PVKWIAIESLADRVYTTKSDVWSFGVTMWEIATRGQTPYPGVEN 220

Query: 463 T---DY--EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
           +   DY  + N L Q   +  + +  L++     +P DRPS E
Sbjct: 221 SEIYDYLRQGNRLKQ-PPDCLDGLYSLMSSCWLLNPKDRPSFE 262

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transformed cells. Axl signaling is important in many cellular functions such as survival, anti-apoptosis, proliferation, migration, and adhesion. Axl was originally isolated from patients with chronic myelogenous leukemia and a chronic myeloproliferative disorder. Axl is overexpressed in many human cancers including colon, squamous cell, thyroid, breast, and lung carcinomas. Length = 272

>gnl|CDD|173683 cd05592, STKc_nPKC_theta_delta, Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

 Score = 44.8 bits (106), Expect = 8e-05
 Identities = 44/186 (23%), Positives = 79/186 (42%), Gaps = 22/186 (11%)

Query: 315 LFILMKKYNT-DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
           LF +M+  N  DL  +++    +           +++ G+  L+     +RDLK DN+LL
Sbjct: 71  LFFVMEYLNGGDLMFHIQS-SGRFDEARARFYAAEIICGLQFLHKKGIIYRDLKLDNVLL 129

Query: 374 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN 433
           D         + I DFG    N +G     +       G    +APE+            
Sbjct: 130 DKDG-----HIKIADFGMCKENMNGEGKAST-----FCGTPDYIAPEILKGQ-------K 172

Query: 434 YSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVAKLLE 490
           Y++S D W+ G + YE+    +PF+    +  ++  +N  P     + +  +  ++KL E
Sbjct: 173 YNESVDWWSFGVLLYEMLIGQSPFHGEDEDELFDSILNDRPHFPRWISKEAKDCLSKLFE 232

Query: 491 NDPSDR 496
            DP+ R
Sbjct: 233 RDPTKR 238

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. Length = 316

>gnl|CDD|132972 cd06641, STKc_MST3, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

 Score = 44.3 bits (104), Expect = 8e-05
 Identities = 50/200 (25%), Positives = 88/200 (44%), Gaps = 26/200 (13%)

Query: 307 GGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDL 366
           G Y ++  L+I+M+         L E    L   +   +  ++L+G+ +L+  +  HRD+
Sbjct: 69  GSYLKDTKLWIIMEYLGGGSALDLLEP-GPLDETQIATILREILKGLDYLHSEKKIHRDI 127

Query: 367 KSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELG---GNVALMAPEVAL 423
           K+ N+LL  SE     ++ + DF        G++ Q +   I+     G    MAPEV  
Sbjct: 128 KAANVLL--SEHG---EVKLADF--------GVAGQLTDTQIKRNTFVGTPFWMAPEVIK 174

Query: 424 ATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQ-SARNTDYEV--NALPQLNTNVPEV 480
            +         SK+D W+ G  A E+   + P  +       + +  N  P L  N  + 
Sbjct: 175 QS------AYDSKADIWSLGITAIELAKGEPPHSELHPMKVLFLIPKNNPPTLEGNYSKP 228

Query: 481 MRRLVAKLLENDPSDRPSAE 500
           ++  V   L  +PS RP+A+
Sbjct: 229 LKEFVEACLNKEPSFRPTAK 248

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and intrauterine growth retardation. Length = 277

>gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

 Score = 44.3 bits (104), Expect = 8e-05
 Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 37/168 (22%)

Query: 345 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYS 404
           +  ++L+G+ +L+  +  HRD+K+ N+LL  SE      + + DF        G++ Q +
Sbjct: 106 MLKEILKGLDYLHSEKKIHRDIKAANVLL--SEQG---DVKLADF--------GVAGQLT 152

Query: 405 SADIE---LGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSAR 461
              I+     G    MAPEV   +         SK+D W+ G  A E+   + P      
Sbjct: 153 DTQIKRNTFVGTPFWMAPEVIQQS------AYDSKADIWSLGITAIELAKGEPP------ 200

Query: 462 NTDYE---------VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
           N+D            N  P L     +  +  +   L  DPS RP+A+
Sbjct: 201 NSDMHPMRVLFLIPKNNPPTLTGEFSKPFKEFIDACLNKDPSFRPTAK 248

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by interacting with the Golgi matrix protein GM130 and may play a role in cell migration. Length = 277

>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

 Score = 44.4 bits (105), Expect = 9e-05
 Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 30/157 (19%)

Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
           +L   + HL+     +RDLK +NILLD  E+     + +TDFG S  +       YS   
Sbjct: 106 ELALALDHLHSLGIIYRDLKPENILLD--EEG---HIKLTDFGLSKESIDHEKKAYS--- 157

Query: 408 IELGGNVALMAPEVALATPGLFSFVN---YSKS-DAWTAGTVAYEIFGHDNPFYQSARNT 463
               G V  MAPEV          VN   +++S D W+ G + +E+     PF    R  
Sbjct: 158 --FCGTVEYMAPEV----------VNRRGHTQSADWWSFGVLMFEMLTGSLPFQGKDRKE 205

Query: 464 DYEVNALPQLNTNVPEVM----RRLVAKLLENDPSDR 496
              +  + +    +P+ +    + L+  L + +P++R
Sbjct: 206 --TMTMILKAKLGMPQFLSPEAQSLLRALFKRNPANR 240

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylates all known RSK substrates. RSKs act as downstream effectors of mitogen-activated protein kinase (MAPK) and play key roles in mitogen-activated cell growth, differentiation, and survival. Mammals possess four RSK isoforms (RSK1-4) from distinct genes. RSK proteins are also referred to as MAP kinase-activated protein kinases (MAPKAPKs), p90-RSKs, or p90S6Ks. Length = 318

>gnl|CDD|173694 cd05603, STKc_SGK2, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

 Score = 44.6 bits (105), Expect = 9e-05
 Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 22/138 (15%)

Query: 331 RERCAQLSMHERVLLFT-QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDF 389
           RERC    +  R   +  ++   + +L+     +RDLK +NILLD         +V+TDF
Sbjct: 89  RERCF---LEPRARFYAAEVASAIGYLHSLNIIYRDLKPENILLDSQG-----HVVLTDF 140

Query: 390 GSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYE 448
           G     K G+  + +++     G    +APEV    P       Y ++ D W  G V YE
Sbjct: 141 GLC---KEGVEPEETTS--TFCGTPEYLAPEVLRKEP-------YDRTVDWWCLGAVLYE 188

Query: 449 IFGHDNPFYQSARNTDYE 466
           +     PFY    +  Y+
Sbjct: 189 MLYGLPPFYSRDVSQMYD 206

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1. Length = 321

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score = 44.1 bits (105), Expect = 1e-04
 Identities = 61/277 (22%), Positives = 107/277 (38%), Gaps = 87/277 (31%)

Query: 240 LKAMSKELLPLRKPLRL-------NEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSS 292
           LK +SK      K ++L       NE  ++ S+     HP +V ++ +F D         
Sbjct: 31  LKILSKA-----KIVKLKQVEHVLNEKRILQSIR----HPFLVNLYGSFQD--------- 72

Query: 293 LIYPSALPARLNPTGGYGRNMSLFILMKKYNT-DLRNYLRERCAQLSMHERVLLF--TQL 349
                              + +L+++M+     +L ++LR +  +    E V  F   Q+
Sbjct: 73  -------------------DSNLYLVMEYVPGGELFSHLR-KSGRFP--EPVARFYAAQV 110

Query: 350 LEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG-------SSYTNKSGLSMQ 402
           +  + +L+     +RDLK +N+LLD     +   + ITDFG        +YT        
Sbjct: 111 VLALEYLHSLDIVYRDLKPENLLLD-----SDGYIKITDFGFAKRVKGRTYT-------- 157

Query: 403 YSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSAR 461
                  L G    +APE+ L+         Y K+ D W  G + YE+     PF+    
Sbjct: 158 -------LCGTPEYLAPEIILSKG-------YGKAVDWWALGILIYEMLAGYPPFFDDNP 203

Query: 462 NTDYE--VNALPQLNTNVPEVMRRLVAKLLENDPSDR 496
              YE  +    +  +      + L+  LL+ D + R
Sbjct: 204 IQIYEKILEGKVRFPSFFSPDAKDLIRNLLQVDLTKR 240

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 59/266 (22%), Positives = 91/266 (34%), Gaps = 68/266 (25%)

Query: 271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYL 330
           H N+V +    TD                  + +         + +++ +  + DL   L
Sbjct: 65  HRNIVNLKEIVTD------------------KQDALDFKKDKGAFYLVFEYMDHDLMGLL 106

Query: 331 RERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG 390
                  S         QLLEG+ + +     HRD+K  NILL     N   Q+ + DFG
Sbjct: 107 ESGLVHFSEDHIKSFMKQLLEGLNYCHKKNFLHRDIKCSNILL-----NNKGQIKLADFG 161

Query: 391 SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEI 449
            +    S  S  Y++  I L        PE+ L          Y  + D W+ G +  E+
Sbjct: 162 LARLYNSEESRPYTNKVITLW----YRPPELLLGEE------RYGPAIDVWSCGCILGEL 211

Query: 450 FGHDNPFYQSARNTDY-----------------EVNALPQLNTNVPEVMRR--------- 483
           F    P +Q+ +                     +V  LP  NT  P+   R         
Sbjct: 212 FTK-KPIFQANQELAQLELISRLCGSPCPAVWPDVIKLPYFNTMKPKKQYRRRLREEFSF 270

Query: 484 -------LVAKLLENDPSDRPSAELA 502
                  L+  +L  DPS R +AE A
Sbjct: 271 IPTPALDLLDHMLTLDPSKRCTAEEA 296

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely expressed in tissues. It interacts with cyclins L1 and L2, and plays roles in regulating transcription and alternative splicing. Length = 302

>gnl|CDD|133230 cd05099, PTKc_FGFR4, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

 Score = 44.2 bits (104), Expect = 1e-04
 Identities = 42/141 (29%), Positives = 60/141 (42%), Gaps = 29/141 (20%)

Query: 325 DLRNYLRERC---------------AQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSD 369
           +LR +LR R                 QLS  + V    Q+  G+ +L   R  HRDL + 
Sbjct: 104 NLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLESRRCIHRDLAAR 163

Query: 370 NILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF 429
           N+L+  +EDN    + I DFG +   +    + Y          V  MAPE       LF
Sbjct: 164 NVLV--TEDNV---MKIADFGLA---RGVHDIDYYKKTSNGRLPVKWMAPE------ALF 209

Query: 430 SFVNYSKSDAWTAGTVAYEIF 450
             V   +SD W+ G + +EIF
Sbjct: 210 DRVYTHQSDVWSFGILMWEIF 230

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Unlike other FGFRs, there is only one splice form of FGFR4. It binds FGF1, FGF2, FGF6, FGF19, and FGF23. FGF19 is a selective ligand for FGFR4. Although disruption of FGFR4 in mice causes no obvious phenotype, in vivo inhibition of FGFR4 in cultured skeletal muscle cells resulted in an arrest of muscle progenitor differentiation. FGF6 and FGFR4 are uniquely expressed in myofibers and satellite cells. FGF6/FGFR4 signaling appears to play a key role in the regulation of muscle regeneration. A polymorphism in FGFR4 is found in head and neck squamous cell carcinoma. Length = 314

>gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

 Score = 43.9 bits (103), Expect = 1e-04
 Identities = 43/168 (25%), Positives = 70/168 (41%), Gaps = 37/168 (22%)

Query: 345 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYS 404
           +  ++L+G+ +L+  R  HRD+K+ N+LL    D     + + DF        G++ Q +
Sbjct: 106 ILREILKGLDYLHSERKIHRDIKAANVLLSEQGD-----VKLADF--------GVAGQLT 152

Query: 405 SADIELG---GNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSAR 461
              I+     G    MAPEV   +   F      K+D W+ G  A E+   + P      
Sbjct: 153 DTQIKRNTFVGTPFWMAPEVIKQSAYDF------KADIWSLGITAIELAKGEPP------ 200

Query: 462 NTDYE---------VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
           N+D            N+ P L     +  +  V   L  DP  RP+A+
Sbjct: 201 NSDLHPMRVLFLIPKNSPPTLEGQYSKPFKEFVEACLNKDPRFRPTAK 248

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 is a candidate gene responsible for pseudopseudohypoparathyroidism (PPHP), a disease that shares features with the Albright hereditary osteodystrophy (AHO) phenotype. Length = 277

>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn

 Score = 43.9 bits (103), Expect = 1e-04
 Identities = 40/174 (22%), Positives = 69/174 (39%), Gaps = 43/174 (24%)

Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG-------SSYTNKSGLS 400
           Q+ EG+ ++      HRDL++ N+L+  SE   C    I DFG       + YT + G  
Sbjct: 111 QIAEGMAYIERKNYIHRDLRAANVLV--SESLMCK---IADFGLARVIEDNEYTAREGAK 165

Query: 401 MQYSSADIELGGNVALMAPEVALATPGLFSFVNYS----KSDAWTAGTVAYEIFGHDNPF 456
                        +   APE           +N+     KSD W+ G + YEI  +    
Sbjct: 166 FP-----------IKWTAPEA----------INFGSFTIKSDVWSFGILLYEIVTYGKIP 204

Query: 457 YQSARNTDYEVNA-----LPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATV 505
           Y    N+D          +P++  N P+ +  ++    +    +RP+ +   +V
Sbjct: 205 YPGMSNSDVMSALQRGYRMPRME-NCPDELYDIMKTCWKEKAEERPTFDYLQSV 257

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261

>gnl|CDD|132967 cd06636, STKc_MAP4K4_6, Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 23/108 (21%)

Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
           ++L G+ HL+ H+  HRD+K  N+LL    +N   +LV  DFG S           +  D
Sbjct: 129 EILRGLAHLHAHKVIHRDIKGQNVLL---TENAEVKLV--DFGVS-----------AQLD 172

Query: 408 IELG------GNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEI 449
             +G      G    MAPEV        +  +Y +SD W+ G  A E+
Sbjct: 173 RTVGRRNTFIGTPYWMAPEVIACDENPDATYDY-RSDIWSLGITAIEM 219

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K4 is also called Nck Interacting kinase (NIK). It facilitates the activation of the MAPKs, extracellular signal-regulated kinase (ERK) 1, ERK2, and c-Jun N-terminal kinase (JNK), by phosphorylating and activating MEKK1. MAP4K4 plays a role in tumor necrosis factor (TNF) alpha-induced insulin resistance. MAP4K4 silencing in skeletal muscle cells from type II diabetic patients restores insulin-mediated glucose uptake. MAP4K4, through JNK, also plays a broad role in cell motility, which impacts inflammation, homeostasis, as well as the invasion and spread of cancer. MAP4K4 is found to be highly expressed in most tumor cell lines relative to normal tissue. MAP4K6 (also called MINK for Misshapen/NIKs-related kinase) is activated after Ras induction and mediates activation of p38 MAPK. MAP4K6 plays a role in cell cycle arrest, cytoskeleton organization, cell adhesion, and cell motility. Length = 282

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 40/126 (31%), Positives = 61/126 (48%), Gaps = 20/126 (15%)

Query: 326 LRNYLRERCAQLSMHERVLLFT-QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           L +YLR R   +   + +L F+  + E + +L  +   HRDL + N+L+  SEDN     
Sbjct: 87  LVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEANNFVHRDLAARNVLV--SEDNVAK-- 142

Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGT 444
            ++DFG        L+ + SS        V   APE AL     FS    +KSD W+ G 
Sbjct: 143 -VSDFG--------LTKEASSTQDTGKLPVKWTAPE-ALREK-KFS----TKSDVWSFGI 187

Query: 445 VAYEIF 450
           + +EI+
Sbjct: 188 LLWEIY 193

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 44.1 bits (105), Expect = 1e-04
 Identities = 54/240 (22%), Positives = 84/240 (35%), Gaps = 82/240 (34%)

Query: 314 SLFILMKKYNTDLRNYLRERCAQLSMHERVLLFT-QLLEGVTHLNMHRT--AHRDLKSDN 370
            ++I+ +   TDL   ++    Q    + +  F  Q+L G+ +  +H     HRDLK  N
Sbjct: 78  DVYIVTELMETDLHKVIKSP--QPLTDDHIQYFLYQILRGLKY--LHSANVIHRDLKPSN 133

Query: 371 ILL--DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALM---------AP 419
           IL+  +C        L I DF        GL+      D +      L          AP
Sbjct: 134 ILVNSNC-------DLKICDF--------GLA---RGVDPDEDEKGFLTEYVVTRWYRAP 175

Query: 420 EVALATPGLFSFVNYSKS-DAWTAGTVAYEIF-------GHDN----------------- 454
           E+ L      S   Y+K+ D W+ G +  E+        G D                  
Sbjct: 176 ELLL------SSSRYTKAIDIWSVGCIFAELLTRKPLFPGRDYIDQLNLIVEVLGTPSEE 229

Query: 455 ----PFYQSARNTDYEVNALP--------QLNTNVPEVMRRLVAKLLENDPSDRPSAELA 502
                  + ARN    + +LP        +L          L+ K+L  DP  R +A+ A
Sbjct: 230 DLKFITSEKARN---YLKSLPKKPKKPLSKLFPGASPEAIDLLEKMLVFDPKKRITADEA 286

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|173713 cd05624, STKc_MRCK_beta, Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

 Score = 43.8 bits (103), Expect = 2e-04
 Identities = 46/183 (25%), Positives = 76/183 (41%), Gaps = 30/183 (16%)

Query: 315 LFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLD 374
           L  L+ K+     + L E  A+  + E VL        +  ++     HRD+K DN+LLD
Sbjct: 88  LLTLLSKF----EDRLPEDMARFYIAEMVL-------AIHSIHQLHYVHRDIKPDNVLLD 136

Query: 375 CSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP-GLFSFVN 433
            +       + + DFGS        ++Q S A     G    ++PE+  A   G+  +  
Sbjct: 137 MNG-----HIRLADFGSCLKMNQDGTVQSSVA----VGTPDYISPEILQAMEDGMGKY-- 185

Query: 434 YSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY-------EVNALPQLNTNVPEVMRRLVA 486
             + D W+ G   YE+   + PFY  +    Y       E    P   T+V E  + L+ 
Sbjct: 186 GPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHEERFQFPSHITDVSEEAKDLIQ 245

Query: 487 KLL 489
           +L+
Sbjct: 246 RLI 248

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues. Length = 331

>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

 Score = 43.4 bits (102), Expect = 2e-04
 Identities = 48/184 (26%), Positives = 82/184 (44%), Gaps = 27/184 (14%)

Query: 323 NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 382
           N  L  +LR+   Q ++ + V +   +  G+ +L+     HRDL + NIL++ +      
Sbjct: 89  NGSLDAFLRKHDGQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILVNSN------ 142

Query: 383 QLV--ITDFGSSYTNKSGLSMQYSSADIELGGNVAL--MAPEVALATPGLFSFVNYSKSD 438
            LV  ++DFG S   +      Y++     GG + +   APE A+A    F+    S SD
Sbjct: 143 -LVCKVSDFGLSRVLEDDPEAAYTTR----GGKIPIRWTAPE-AIAYRK-FT----SASD 191

Query: 439 AWTAGTVAYEIFGHDNPFYQSARNTDY-----EVNALPQLNTNVPEVMRRLVAKLLENDP 493
            W+ G V +E+  +    Y    N D      E   LP    + P  + +L+    + D 
Sbjct: 192 VWSYGIVMWEVMSYGERPYWEMSNQDVIKAIEEGYRLPA-PMDCPAALHQLMLDCWQKDR 250

Query: 494 SDRP 497
           ++RP
Sbjct: 251 NERP 254

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. EphARs and ephrin-A ligands are expressed in multiple areas of the developing brain, especially in the retina and tectum. They are part of a system controlling retinotectal mapping. Length = 267

>gnl|CDD|165476 PHA03210, PHA03210, serine/threonine kinase US3; Provisional

 Score = 43.9 bits (103), Expect = 2e-04
 Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 25/145 (17%)

Query: 316 FILMKKYNTDLRNYLRERCAQLSMHERVLL------FTQLLEGVTHLNMHRTAHRDLKSD 369
           +++ +KY+ DL +++ +        +R LL        QLL  V +++  +  HRD+K +
Sbjct: 239 YMITQKYDFDLYSFMYD--EAFDWKDRPLLKQTRAIMKQLLCAVEYIHDKKLIHRDIKLE 296

Query: 370 NILLDCSEDNTCPQLVITDFGSSYT-NKSGLSMQYSSADIELGGNVALMAPEVALATPGL 428
           NI L+C  D     +V+ DFG++    K   +  Y        G VA  +PE+ LA  G 
Sbjct: 297 NIFLNC--DGK---IVLGDFGTAMPFEKEREAFDYGWV-----GTVATNSPEI-LAGDGY 345

Query: 429 FSFVNYSKSDAWTAGTVAYEIFGHD 453
                   +D W+ G +  ++  HD
Sbjct: 346 CEI-----TDIWSCGLILLDMLSHD 365

Length = 501

>gnl|CDD|143367 cd07862, STKc_CDK6, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

 Score = 43.1 bits (101), Expect = 2e-04
 Identities = 49/175 (28%), Positives = 73/175 (41%), Gaps = 38/175 (21%)

Query: 311 RNMSLFILMKKYNTDLRNYLRERCAQLSMHERVL--LFTQLLEGVTHLNMHRTAHRDLKS 368
           R   L ++ +  + DL  YL ++  +  +    +  +  QLL G+  L+ HR  HRDLK 
Sbjct: 80  RETKLTLVFEHVDQDLTTYL-DKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKP 138

Query: 369 DNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVAL--MAPEVAL--- 423
            NIL+  S      Q+ + DF        GL+  YS         V L   APEV L   
Sbjct: 139 QNILVTSSG-----QIKLADF--------GLARIYSFQMALTSVVVTLWYRAPEVLLQSS 185

Query: 424 -ATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD-----YEVNALPQ 472
            ATP           D W+ G +  E+F    P ++ + + D      +V  LP 
Sbjct: 186 YATP----------VDLWSVGCIFAEMF-RRKPLFRGSSDVDQLGKILDVIGLPG 229

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytoplasm. It is also present in the ruffling edge of spreading fibroblasts and may play a role in cell spreading. It binds to the p21 inhibitor without any effect on its own activity and it is overexpressed in squamous cell carcinomas and neuroblastomas. CDK6 has also been shown to inhibit cell differentiation in many cell types. Length = 290

>gnl|CDD|143381 cd07876, STKc_JNK2, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

 Score = 43.5 bits (102), Expect = 2e-04
 Identities = 48/162 (29%), Positives = 68/162 (41%), Gaps = 28/162 (17%)

Query: 340 HERV-LLFTQLLEGVTHLNMHRTAHRDLKSDNILL--DCSEDNTCPQLVITDFGSSYTNK 396
           HER+  L  Q+L G+ HL+     HRDLK  NI++  DC+       L I DFG + T  
Sbjct: 122 HERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCT-------LKILDFGLARTAC 174

Query: 397 SGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNP 455
           +   M                APEV L        + Y ++ D W+ G +  E+    + 
Sbjct: 175 TNFMMTPYVV------TRYYRAPEVILG-------MGYKENVDIWSVGCIMGELV-KGSV 220

Query: 456 FYQSARNTDYEVNALPQLNTNVPEVMRRL---VAKLLENDPS 494
            +Q   + D     + QL T   E M RL   V   +EN P 
Sbjct: 221 IFQGTDHIDQWNKVIEQLGTPSAEFMNRLQPTVRNYVENRPQ 262

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK2 is specifically translocated to the mitochondria during dopaminergic cell death. Specific substrates include the microtubule-associated proteins DCX and Tau, as well as TIF-IA which is involved in ribosomal RNA synthesis regulation. Mice deficient in Jnk2 show protection against arthritis, type 1 diabetes, atherosclerosis, abdominal aortic aneurysm, cardiac cell death, TNF-induced liver damage, and tumor growth, indicating that JNK2 may play roles in the pathogenesis of these diseases. Length = 359

>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 45/167 (26%), Positives = 72/167 (43%), Gaps = 33/167 (19%)

Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSS---YTNKSGLSMQYS 404
           Q+  G+ +L   +  HRDL + N+L+  +E        I+DFG S   Y   S +  + S
Sbjct: 135 QISRGMQYLAEMKLVHRDLAARNVLV--AEGRKMK---ISDFGLSRDVYEEDSYV--KRS 187

Query: 405 SADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIF---GHDNPFYQSAR 461
              I     V  MA E       LF  +  ++SD W+ G + +EI    G+  P     R
Sbjct: 188 KGRIP----VKWMAIE------SLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIAPER 237

Query: 462 -----NTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS-AELA 502
                 T Y +   P+   N  E M  L+    + +P  RP+ A+++
Sbjct: 238 LFNLLKTGYRMER-PE---NCSEEMYNLMLTCWKQEPDKRPTFADIS 280

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290

>gnl|CDD|133229 cd05098, PTKc_FGFR1, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

 Score = 43.1 bits (101), Expect = 2e-04
 Identities = 41/141 (29%), Positives = 60/141 (42%), Gaps = 29/141 (20%)

Query: 325 DLRNYLRER---------------CAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSD 369
           +LR YLR R                 QLS  + V    Q+  G+ +L   +  HRDL + 
Sbjct: 110 NLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLASKKCIHRDLAAR 169

Query: 370 NILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF 429
           N+L+  +EDN    + I DFG +   +    + Y          V  MAPE       LF
Sbjct: 170 NVLV--TEDNV---MKIADFGLA---RDIHHIDYYKKTTNGRLPVKWMAPE------ALF 215

Query: 430 SFVNYSKSDAWTAGTVAYEIF 450
             +   +SD W+ G + +EIF
Sbjct: 216 DRIYTHQSDVWSFGVLLWEIF 236

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Alternative splicing of FGFR1 transcripts produces a variety of isoforms, which are differentially expressed in cells. FGFR1 binds the ligands, FGF1 and FGF2, with high affinity and has also been reported to bind FGF4, FGF6, and FGF9. FGFR1 signaling is critical in the control of cell migration during embryo development. It promotes cell proliferation in fibroblasts. Nuclear FGFR1 plays a role in the regulation of transcription. Mutations, insertions or deletions of FGFR1 have been identified in patients with Kallman's syndrome (KS), an inherited disorder characterized by hypogonadotropic hypogonadism and loss of olfaction. Aberrant FGFR1 expression has been found in some human cancers including 8P11 myeloproliferative syndrome (EMS), breast cancer, and pancreatic adenocarcinoma. Length = 307

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 47/193 (24%), Positives = 82/193 (42%), Gaps = 46/193 (23%)

Query: 323 NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 382
           N  L  +LRE   + ++ + V +   +  G+ +L+     HRDL + NIL+  + +  C 
Sbjct: 89  NGSLDKFLRENDGKFTVGQLVGMLRGIASGMKYLSEMNYVHRDLAARNILV--NSNLVCK 146

Query: 383 QLVITDFG---------SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN 433
              ++DFG         ++YT K G               +   APE A+A    F+   
Sbjct: 147 ---VSDFGLSRRLEDSEATYTTKGGKI------------PIRWTAPE-AIAY-RKFT--- 186

Query: 434 YSKSDAWTAGTVAYEI--FGHDNPFYQ-------SARNTDYEVNALPQLNTNVPEVMRRL 484
            S SD W+ G V +E+  +G + P++         A    Y    LP    + P  + +L
Sbjct: 187 -SASDVWSFGIVMWEVMSYG-ERPYWDMSNQDVIKAVEDGYR---LPP-PMDCPSALYQL 240

Query: 485 VAKLLENDPSDRP 497
           +    + D ++RP
Sbjct: 241 MLDCWQKDRNERP 253

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|133232 cd05101, PTKc_FGFR2, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

 Score = 43.1 bits (101), Expect = 3e-04
 Identities = 42/164 (25%), Positives = 73/164 (44%), Gaps = 30/164 (18%)

Query: 303 LNPTGGYGRNMSLFILMKKYNT-DLRNYLRERCA---------------QLSMHERVLLF 346
           +N  G   ++  L+++++  +  +LR YLR R                 Q++  + V   
Sbjct: 84  INLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCT 143

Query: 347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSA 406
            Q+  G+ +L   +  HRDL + N+L+  +E+N    + I DFG +   +   ++ Y   
Sbjct: 144 YQVARGMEYLASQKCIHRDLAARNVLV--TENNV---MKIADFGLA---RDVNNIDYYKK 195

Query: 407 DIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIF 450
                  V  MAPE       LF  V   +SD W+ G + +EIF
Sbjct: 196 TTNGRLPVKWMAPE------ALFDRVYTHQSDVWSFGVLMWEIF 233

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. There are many splice variants of FGFR2 which show differential expression and binding to FGF ligands. Disruption of either FGFR2 or FGFR2b is lethal in mice, due to defects in the placenta or severe impairment of tissue development including lung, limb, and thyroid, respectively. Disruption of FGFR2c in mice results in defective bone and skull development. Genetic alterations of FGFR2 are associated with many human skeletal disorders including Apert syndrome, Crouzon syndrome, Jackson-Weiss syndrome, and Pfeiffer syndrome. Length = 304

>gnl|CDD|143374 cd07869, STKc_PFTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

 Score = 42.8 bits (100), Expect = 3e-04
 Identities = 54/237 (22%), Positives = 92/237 (38%), Gaps = 48/237 (20%)

Query: 314 SLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
           +L ++ +  +TDL  Y+ +    L      L   QLL G+++++     HRDLK  N+L+
Sbjct: 77  TLTLVFEYVHTDLCQYMDKHPGGLHPENVKLFLFQLLRGLSYIHQRYILHRDLKPQNLLI 136

Query: 374 DCSEDNTCPQLVITDFG---------SSYTNKSGLSMQYSSADIELG------------- 411
                +   +L + DFG          +Y+N+  +++ Y   D+ LG             
Sbjct: 137 -----SDTGELKLADFGLARAKSVPSHTYSNEV-VTLWYRPPDVLLGSTEYSTCLDMWGV 190

Query: 412 GNVALMAPEVALATPGL----------FSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSAR 461
           G + +   +   A PG+          F  +     D W           H  P ++  R
Sbjct: 191 GCIFVEMIQGVAAFPGMKDIQDQLERIFLVLGTPNEDTWPG--------VHSLPHFKPER 242

Query: 462 NTDYEVNALPQLNTNVPEV--MRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHW 516
            T Y    L Q    +  V     L +KLL+  P +R SA+ A +        P+ W
Sbjct: 243 FTLYSPKNLRQAWNKLSYVNHAEDLASKLLQCFPKNRLSAQAALSHEYFSDLPPRLW 299

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 and is inhibited by the p21 cell cycle inhibitor. It has also been shown to interact with the membrane-associated cyclin Y, which recruits the protein to the plasma membrane. Length = 303

>gnl|CDD|132968 cd06637, STKc_TNIK, Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

 Score = 42.8 bits (100), Expect = 3e-04
 Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 11/102 (10%)

Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
           ++L G++HL+ H+  HRD+K  N+LL    +N   +LV  DFG S      +  + +   
Sbjct: 119 EILRGLSHLHQHKVIHRDIKGQNVLL---TENAEVKLV--DFGVSAQLDRTVGRRNT--- 170

Query: 408 IELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEI 449
               G    MAPEV        +  ++ KSD W+ G  A E+
Sbjct: 171 --FIGTPYWMAPEVIACDENPDATYDF-KSDLWSLGITAIEM 209

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activates the c-Jun N-terminal kinase (JNK) pathway and plays a role in regulating the actin cytoskeleton. Length = 272

>gnl|CDD|173647 cd05091, PTKc_Ror2, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

 Score = 42.7 bits (100), Expect = 3e-04
 Identities = 56/234 (23%), Positives = 100/234 (42%), Gaps = 45/234 (19%)

Query: 238 AILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPS 297
           AI     K   PLR+  + +E M+ + ++    HPN+V +    T   P     S+I+  
Sbjct: 39  AIKTLKDKAEGPLREEFK-HEAMMRSRLQ----HPNIVCLLGVVTKEQPL----SMIFSY 89

Query: 298 ALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMH--ERVLLFTQLLEGVTH 355
              + L+           F++M+  ++D+ +   ++  + ++   + V + TQ+  G+  
Sbjct: 90  CSHSDLHE----------FLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEF 139

Query: 356 LNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD-IELGGNV 414
           L+ H   H+DL + N+L             + D  +   +  GL  +  +AD  +L GN 
Sbjct: 140 LSSHHVVHKDLATRNVL-------------VFDKLNVKISDLGLFREVYAADYYKLMGNS 186

Query: 415 AL----MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD 464
            L    M+PE      G FS      SD W+ G V +E+F +    Y    N D
Sbjct: 187 LLPIRWMSPEA--IMYGKFSI----DSDIWSYGVVLWEVFSYGLQPYCGYSNQD 234

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror2 plays important roles in skeletal and heart formation. Ror2-deficient mice show widespread bone abnormalities, ventricular defects in the heart, and respiratory dysfunction. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Ror2 is also implicated in neural development. Length = 283

>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase, Yes

 Score = 42.4 bits (99), Expect = 3e-04
 Identities = 48/200 (24%), Positives = 81/200 (40%), Gaps = 42/200 (21%)

Query: 326 LRNYLRERCAQ-LSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           L ++L+E   + L + + V +  Q+ +G+ ++      HRDL++ NIL+   ++  C   
Sbjct: 87  LLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIERMNYIHRDLRAANILV--GDNLVCK-- 142

Query: 385 VITDFG-------SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS 437
            I DFG       + YT + G               +   APE AL   G F+     KS
Sbjct: 143 -IADFGLARLIEDNEYTARQGAKFP-----------IKWTAPEAALY--GRFTI----KS 184

Query: 438 DAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLN--------TNVPEVMRRLVAKLL 489
           D W+ G +  E+       Y    N +     L Q+            PE +  L+    
Sbjct: 185 DVWSFGILLTELVTKGRVPYPGMVNRE----VLEQVERGYRMPCPQGCPESLHELMKLCW 240

Query: 490 ENDPSDRPSAELAATVCQLY 509
           + DP +RP+ E   +  + Y
Sbjct: 241 KKDPDERPTFEYIQSFLEDY 260

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Length = 260

>gnl|CDD|173695 cd05604, STKc_SGK3, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

 Score = 42.7 bits (100), Expect = 3e-04
 Identities = 38/147 (25%), Positives = 58/147 (39%), Gaps = 24/147 (16%)

Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
           ++   + +L+     +RDLK +NILLD     +   +V+TDFG     K G++   S   
Sbjct: 104 EIASALGYLHSINIVYRDLKPENILLD-----SQGHVVLTDFGLC---KEGIAQ--SDTT 153

Query: 408 IELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDY- 465
               G    +APEV    P       Y  + D W  G V YE+     PFY       Y 
Sbjct: 154 TTFCGTPEYLAPEVIRKQP-------YDNTVDWWCLGAVLYEMLYGLPPFYCRDVAEMYD 206

Query: 466 -----EVNALPQLNTNVPEVMRRLVAK 487
                 +   P  +     ++  L+ K
Sbjct: 207 NILHKPLVLRPGASLTAWSILEELLEK 233

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. Length = 325

>gnl|CDD|173662 cd05571, STKc_PKB, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 40/152 (26%), Positives = 68/152 (44%), Gaps = 20/152 (13%)

Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
           +++  + +L+     +RDLK +N++LD  +D     + ITDFG     K G+S    +  
Sbjct: 103 EIVSALGYLHSCDVVYRDLKLENLMLD--KDG---HIKITDFGLC---KEGIS--DGATM 152

Query: 408 IELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYE 466
               G    +APEV           +Y ++ D W  G V YE+     PFY       +E
Sbjct: 153 KTFCGTPEYLAPEV-------LEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFE 205

Query: 467 VNALPQLN--TNVPEVMRRLVAKLLENDPSDR 496
           +  + ++     +    + L+A LL+ DP  R
Sbjct: 206 LILMEEIRFPRTLSPEAKSLLAGLLKKDPKQR 237

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having been implicated in tumor initiation, progression, and metastasis. Length = 323

>gnl|CDD|173722 cd05633, STKc_GRK3, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

 Score = 42.7 bits (100), Expect = 3e-04
 Identities = 47/188 (25%), Positives = 77/188 (40%), Gaps = 27/188 (14%)

Query: 316 FILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDC 375
           FIL      DL  +L +     S  E     T+++ G+ H++     +RDLK  NILLD 
Sbjct: 74  FILDLMNGGDLHYHLSQH-GVFSEKEMRFYATEIILGLEHMHNRFVVYRDLKPANILLD- 131

Query: 376 SEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELG-GNVALMAPEVALATPGLFSFVNY 434
                       + G    +  GL+  +S        G    MAPEV      L     Y
Sbjct: 132 ------------EHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEV------LQKGTAY 173

Query: 435 SKSDAW-TAGTVAYEIFGHDNPFYQSARNTDYEVNALP-QLNTNVPEV----MRRLVAKL 488
             S  W + G + +++    +PF Q      +E++ +   +N  +P+     ++ L+  L
Sbjct: 174 DSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTVNVELPDSFSPELKSLLEGL 233

Query: 489 LENDPSDR 496
           L+ D S R
Sbjct: 234 LQRDVSKR 241

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is widely expressed in many tissues. GRK3-deficient mice show a lack of olfactory receptor desensitization and altered regulation of the M2 muscarinic airway. GRK3 is involved in modulating the cholinergic response of airway smooth muscles. It also plays a role in dopamine receptor regulation. GRK3 promoter polymorphisms may be associated with bipolar disorder. Length = 279

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 37/119 (31%), Positives = 52/119 (43%), Gaps = 29/119 (24%)

Query: 347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLV--ITDFGSSYTNKSGLSMQYS 404
            Q+  G+ +L+ H   HRDL + N L+          L   I+DF        GLS    
Sbjct: 131 IQIAAGMEYLSSHHFVHRDLAARNCLVG-------EGLTVKISDF--------GLSRDIY 175

Query: 405 SAD-IELGGNVAL----MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHD-NPFY 457
           SAD   +     L    M PE  L   G F+    ++SD W+ G V +EIF +   P+Y
Sbjct: 176 SADYYRVQSKSLLPVRWMPPEAILY--GKFT----TESDIWSFGVVLWEIFSYGLQPYY 228

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|173697 cd05606, STKc_beta_ARK, Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 46/188 (24%), Positives = 75/188 (39%), Gaps = 27/188 (14%)

Query: 316 FILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDC 375
           FIL      DL  +L +     S  E      +++ G+ H++     +RDLK  NILLD 
Sbjct: 74  FILDLMNGGDLHYHLSQH-GVFSEAEMRFYAAEIILGLEHMHNRFVVYRDLKPANILLD- 131

Query: 376 SEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELG-GNVALMAPEVALATPGLFSFVNY 434
                       + G    +  GL+  +S        G    MAPEV      L   V Y
Sbjct: 132 ------------EHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEV------LQKGVAY 173

Query: 435 SKSDAW-TAGTVAYEIFGHDNPFYQSARNTDYEVNAL-----PQLNTNVPEVMRRLVAKL 488
             S  W + G + +++    +PF Q      +E++ +      +L  +    +R L+  L
Sbjct: 174 DSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELPDSFSPELRSLLEGL 233

Query: 489 LENDPSDR 496
           L+ D + R
Sbjct: 234 LQRDVNRR 241

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is composed of GRK2, GRK3, and similar proteins. GRK2 and GRK3 are both widely expressed in many tissues, although GRK2 is present at higher levels. They contain an N-terminal RGS homology (RH) domain, a central catalytic domain, and C-terminal pleckstrin homology (PH) domain that mediates PIP2 and G protein betagamma-subunit translocation to the membrane. GRK2 (also called beta-ARK or beta-ARK1) is important in regulating several cardiac receptor responses. It plays a role in cardiac development and in hypertension. Deletion of GRK2 in mice results in embryonic lethality, caused by hypoplasia of the ventricular myocardium. GRK2 also plays important roles in the liver (as a regulator of portal blood pressure), in immune cells, and in the nervous system. Altered GRK2 expression has been reported in several disorders including major depression, schizophrenia, bipolar disorder, and Parkinsonism. Length = 278

>gnl|CDD|133234 cd05103, PTKc_VEGFR2, Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

 Score = 42.7 bits (100), Expect = 4e-04
 Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 22/118 (18%)

Query: 337 LSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNK 396
           L++ + +    Q+ +G+  L   +  HRDL + NILL  SE+N    + I DFG +    
Sbjct: 176 LTLEDLICYSFQVAKGMEFLASRKCIHRDLAARNILL--SENNV---VKICDFGLARD-- 228

Query: 397 SGLSMQYSSADIELGGNVAL----MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIF 450
                 Y   D    G+  L    MAPE       +F  V   +SD W+ G + +EIF
Sbjct: 229 -----IYKDPDYVRKGDARLPLKWMAPET------IFDRVYTIQSDVWSFGVLLWEIF 275

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosphorylation and activation. VEGFR2 binds the ligands VEGFA, VEGFC, VEGFD and VEGFE. VEGFR2 signaling is implicated in all aspects of normal and pathological vascular endothelial cell biology. It induces a variety of cellular effects including migration, survival, and proliferation. It is critical in regulating embryonic vascular development and angiogenesis. VEGFR2 is the major signal transducer in pathological angiogenesis including cancer and diabetic retinopathy, and is a target for inhibition in cancer therapy. Length = 343

>gnl|CDD|173691 cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 52/187 (27%), Positives = 72/187 (38%), Gaps = 41/187 (21%)

Query: 325 DLRNYLRERCAQLSMHERVLLF--TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 382
           D R  L        + E    F   ++ E V  L+     HRDLK +N L+D S      
Sbjct: 87  DFRTLL---NNLGVLSEDHARFYMAEMFEAVDALHELGYIHRDLKPENFLIDASG----- 138

Query: 383 QLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWT 441
            + +TDFG S   K  ++   S       G+   MAPEV            Y  + D W+
Sbjct: 139 HIKLTDFGLS---KGIVTYANSVV-----GSPDYMAPEVLRGK-------GYDFTVDYWS 183

Query: 442 AGTVAYE-IFGHDNPFYQSARNTDYEVNAL--------PQLNTNVPEVMRR---LVAKLL 489
            G + YE + G   PF  S  N  +E N          P  +     +      L+ KL+
Sbjct: 184 LGCMLYEFLCGF-PPFSGSTPNETWE-NLKYWKETLQRPVYDDPRFNLSDEAWDLITKLI 241

Query: 490 ENDPSDR 496
            NDPS R
Sbjct: 242 -NDPSRR 247

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. Dbf2p is important in regulating the mitotic exit network (MEN) and in cytokinesis. Length = 333

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 42.2 bits (100), Expect = 4e-04
 Identities = 70/339 (20%), Positives = 119/339 (35%), Gaps = 101/339 (29%)

Query: 201 GKFIAKGTNAVVYEA--TFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNE 258
           GK + +GT AVVY+A     G   A+K +           I    +           L E
Sbjct: 5   GKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGI--NFTA----------LRE 52

Query: 259 DMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSL-FI 317
             L+  ++    HPN++ +   F                          G+  N++L F 
Sbjct: 53  IKLLQELK----HPNIIGLLDVF--------------------------GHKSNINLVFE 82

Query: 318 LMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSE 377
            M+   TDL   ++++   L+  +        L G+ +L+ +   HRDLK +N+L+    
Sbjct: 83  FME---TDLEKVIKDKSIVLTPADIKSYMLMTLRGLEYLHSNWILHRDLKPNNLLIA--S 137

Query: 378 DNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNV-ALM--APEVALATPGLFSFVNY 434
           D     L + DF        GL+  + S + ++   V      APE+      LF   +Y
Sbjct: 138 DG---VLKLADF--------GLARSFGSPNRKMTHQVVTRWYRAPEL------LFGARHY 180

Query: 435 SKS-DAWTAGTVAYE------IFGHDNPFYQSAR----------NTDYEVNALP------ 471
               D W+ G +  E          D+   Q  +               V +LP      
Sbjct: 181 GVGVDMWSVGCIFAELLLRVPFLPGDSDIDQLGKIFEALGTPTEENWPGVTSLPDYVEFK 240

Query: 472 --------QLNTNVPEVMRRLVAKLLENDPSDRPSAELA 502
                   Q+     +    L+ +LL  +P+ R +A  A
Sbjct: 241 PFPPTPLKQIFPAASDDALDLLQRLLTLNPNKRITARQA 279

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|173709 cd05619, STKc_nPKC_theta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

 Score = 42.3 bits (99), Expect = 4e-04
 Identities = 38/144 (26%), Positives = 60/144 (41%), Gaps = 16/144 (11%)

Query: 314 SLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
           +LF +M+  N     +  + C +  +        +++ G+  L+     +RDLK DNILL
Sbjct: 70  NLFFVMEYLNGGDLMFHIQSCHKFDLPRATFYAAEIICGLQFLHSKGIVYRDLKLDNILL 129

Query: 374 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN 433
           D     T   + I DFG    N  G      +      G    +APE+ L         N
Sbjct: 130 D-----TDGHIKIADFGMCKENMLG-----DAKTCTFCGTPDYIAPEILLGQK-----YN 174

Query: 434 YSKSDAWTAGTVAYEIFGHDNPFY 457
            S  D W+ G + YE+    +PF+
Sbjct: 175 TS-VDWWSFGVLLYEMLIGQSPFH 197

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. Although T-cells also express other PKC isoforms, PKC-theta is unique in that upon antigen stimulation, it is translocated to the plasma membrane at the immunological synapse, where it mediates signals essential for T-cell activation. It is essential for TCR-induced proliferation, cytokine production, T-cell survival, and the differentiation and effector function of T-helper (Th) cells, particularly Th2 and Th17. PKC-theta is being developed as a therapeutic target for Th2-mediated allergic inflammation and Th17-mediated autoimmune diseases. Length = 316

>gnl|CDD|132974 cd06643, STKc_SLK, Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

 Score = 42.3 bits (99), Expect = 4e-04
 Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 11/111 (9%)

Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
           Q LE + +L+ ++  HRDLK+ NIL     D     + + DFG S  N   +  + S   
Sbjct: 111 QTLEALNYLHENKIIHRDLKAGNILFTLDGD-----IKLADFGVSAKNTRTIQRRDS--- 162

Query: 408 IELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQ 458
               G    MAPEV +         +Y K+D W+ G    E+   + P ++
Sbjct: 163 --FIGTPYWMAPEVVMCETSKDRPYDY-KADVWSLGITLIEMAQIEPPHHE 210

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration. Length = 282

>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 43/161 (26%), Positives = 68/161 (42%), Gaps = 26/161 (16%)

Query: 347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSA 406
            Q+  G+ +L   R  HRDL + NILL  + D+   ++ I DFG                
Sbjct: 104 VQIANGMRYLESKRFIHRDLAARNILL--ASDD---KVKIGDFGLMRALPQNEDHYVMEE 158

Query: 407 DIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGH-DNPFY-----QSA 460
            +++    A  APE +L T   FS      SD W  G   +E+F + + P+      Q  
Sbjct: 159 HLKV--PFAWCAPE-SLRT-RTFS----HASDVWMFGVTLWEMFTYGEEPWAGLSGSQIL 210

Query: 461 RNTDYEVNALPQ---LNTNVPEVMRRLVAKLLENDPSDRPS 498
           +  D E   L +      ++  VM +  A     +P+DRP+
Sbjct: 211 KKIDKEGERLERPEACPQDIYNVMLQCWAH----NPADRPT 247

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257

>gnl|CDD|173685 cd05594, STKc_PKB_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

 Score = 42.3 bits (99), Expect = 5e-04
 Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 27/177 (15%)

Query: 348 QLLEGVTHLNMHR-TAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTN-KSGLSMQYSS 405
           +++  + +L+  +   +RDLK +N++LD  +D     + ITDFG      K G +M+   
Sbjct: 103 EIVSALDYLHSEKNVVYRDLKLENLMLD--KDG---HIKITDFGLCKEGIKDGATMK--- 154

Query: 406 ADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTD 464
                 G    +APEV           +Y ++ D W  G V YE+     PFY       
Sbjct: 155 ---TFCGTPEYLAPEV-------LEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKL 204

Query: 465 YEVNALPQL---NTNVPEVMRRLVAKLLENDPSDR--PSAELAATVCQLYLWAPKHW 516
           +E+  + ++    T  PE  + L++ LL+ DP  R     + A  + Q   +A   W
Sbjct: 205 FELILMEEIRFPRTLSPEA-KSLLSGLLKKDPKQRLGGGPDDAKEIMQHKFFAGIVW 260

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficient in PKB-alpha exhibit perinatal morbidity, growth retardation, reduction in body weight accompanied by reduced sizes of multiple organs, and enhanced apoptosis in some cell types. PKB-alpha activity has been reported to be frequently elevated in breast and prostate cancers. In some cancer cells, PKB-alpha may act as a suppressor of metastasis. Length = 325

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 41.9 bits (99), Expect = 6e-04
 Identities = 43/224 (19%), Positives = 69/224 (30%), Gaps = 56/224 (25%)

Query: 315 LFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLD 374
           L+++ +     L   L      L          QLL+ + + + H   HRD+K +NIL+ 
Sbjct: 75  LYLVFEYVERTLLELLEASPGGLPPDAVRSYIWQLLQAIAYCHSHNIIHRDIKPENILV- 133

Query: 375 CSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVA---LMAPEVALATPGLFSF 431
            SE      L + DFG +   ++  +   +         VA     APE+      L   
Sbjct: 134 -SESGV---LKLCDFGFARALRARPASPLTDY-------VATRWYRAPEL------LVGD 176

Query: 432 VNYSKS-DAWTAGTVAYEIF---------------------------GHDNPFYQSARNT 463
            NY K  D W  G +  E+                             H   F  + R  
Sbjct: 177 TNYGKPVDVWAIGCIMAELLDGEPLFPGDSDIDQLYLIQKCLGPLPPSHQELFSSNPRFA 236

Query: 464 DYEVNALPQLNT-------NVPEVMRRLVAKLLENDPSDRPSAE 500
                   Q  +        V       +   L  DP +R + +
Sbjct: 237 GVAFPEPSQPESLERRYPGKVSSPALDFLKACLRMDPKERLTCD 280

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|132983 cd06652, STKc_MEKK2, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

 Score = 41.6 bits (97), Expect = 7e-04
 Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 28/162 (17%)

Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNK----SGLSMQY 403
           Q+LEGV++L+ +   HRD+K  NIL D   +     + + DFG+S   +    SG  M+ 
Sbjct: 114 QILEGVSYLHSNMIVHRDIKGANILRDSVGN-----VKLGDFGASKRLQTICLSGTGMK- 167

Query: 404 SSADIELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQ-SAR 461
                 + G    M+PEV        S   Y  K+D W+ G    E+     P+ +  A 
Sbjct: 168 -----SVTGTPYWMSPEV-------ISGEGYGRKADIWSVGCTVVEMLTEKPPWAEFEAM 215

Query: 462 NTDYEVNAL---PQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
              +++      P L  +V +  R  + ++   +   RPSA+
Sbjct: 216 AAIFKIATQPTNPVLPPHVSDHCRDFLKRIFV-EAKLRPSAD 256

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their respective MAPKKs MEK1/2, JNK-activating kinase 2 (JNKK2), and MKK3/6. MEKK2 plays roles in T cell receptor signaling, immune synapse formation, cytokine gene expression, as well as in EGF and FGF receptor signaling. Length = 265

>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

 Score = 41.5 bits (97), Expect = 7e-04
 Identities = 43/182 (23%), Positives = 82/182 (45%), Gaps = 23/182 (12%)

Query: 323 NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 382
           N  L  YLR+   + S ++ V +   +  G+ +L+     HRDL + NIL+     N+  
Sbjct: 90  NGALDKYLRDHDGEFSSYQLVGMLRGIAAGMKYLSDMNYVHRDLAARNILV-----NSNL 144

Query: 383 QLVITDFGSSYTNKSGLSMQYSSADIELGGNVAL--MAPEVALATPGLFSFVNY-SKSDA 439
           +  ++DFG S   +      Y+++    GG + +   APE         ++  + S SD 
Sbjct: 145 ECKVSDFGLSRVLEDDPEGTYTTS----GGKIPIRWTAPEA-------IAYRKFTSASDV 193

Query: 440 WTAGTVAYEIFGH-DNPFYQ-SARNTDYEVNALPQLNT--NVPEVMRRLVAKLLENDPSD 495
           W+ G V +E+    + P++  S       +N   +L    + P  + +L+ +  + D + 
Sbjct: 194 WSFGIVMWEVMSFGERPYWDMSNHEVMKAINDGFRLPAPMDCPSAVYQLMLQCWQQDRAR 253

Query: 496 RP 497
           RP
Sbjct: 254 RP 255

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268

>gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional

 Score = 42.4 bits (99), Expect = 7e-04
 Identities = 61/217 (28%), Positives = 86/217 (39%), Gaps = 42/217 (19%)

Query: 312 NMSLFILMKKYNT-DL-RNYLRERC----AQLSMHERVLLFTQLLEGVTHL-------NM 358
           N  L+ILM+  +  DL RN   ++C     ++  H  V +  QLL  + +        N 
Sbjct: 86  NQKLYILMEFCDAGDLSRNI--QKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNG 143

Query: 359 HRTAHRDLKSDNILLD------------CSEDNTCPQLVITDFGSSYTNKSGLSMQYSSA 406
            R  HRDLK  NI L              +  N  P   I DFG S  N    SM +S  
Sbjct: 144 ERVLHRDLKPQNIFLSTGIRHIGKITAQANNLNGRPIAKIGDFGLS-KNIGIESMAHSCV 202

Query: 407 DIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE 466
                G     +PE+ L     +      KSD W  G + YE+     PF++ A N    
Sbjct: 203 -----GTPYYWSPELLLHETKSYD----DKSDMWALGCIIYELCSGKTPFHK-ANNFSQL 252

Query: 467 VNAL---PQLNTN-VPEVMRRLVAKLLENDPSDRPSA 499
           ++ L   P L      + +  L+  LL     +RPSA
Sbjct: 253 ISELKRGPDLPIKGKSKELNILIKNLLNLSAKERPSA 289

Length = 1021

>gnl|CDD|132949 cd06618, PKc_MKK7, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

 Score = 41.6 bits (98), Expect = 7e-04
 Identities = 42/148 (28%), Positives = 54/148 (36%), Gaps = 25/148 (16%)

Query: 359 HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMA 418
           H   HRD+K  NILLD S       + + DFG      SG  +  S A     G  A MA
Sbjct: 134 HGVIHRDVKPSNILLDASG-----NVKLCDFGI-----SG-RLVDSKAKTRSAGCAAYMA 182

Query: 419 PEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV------NALP 471
           PE  +  P       Y  ++D W+ G    E+     P+      T++EV         P
Sbjct: 183 PE-RIDPPDPNP--KYDIRADVWSLGISLVELATGQFPYKNC--KTEFEVLTKILQEEPP 237

Query: 472 QL--NTNVPEVMRRLVAKLLENDPSDRP 497
            L  N          V   L  D   RP
Sbjct: 238 SLPPNEGFSPDFCSFVDLCLTKDHRKRP 265

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates its downstream target, c-Jun N-terminal kinase (JNK), on specific threonine and tyrosine residues. Although MKK7 is capable of dual phosphorylation, it prefers to phosphorylate the threonine residue of JNK. Thus, optimal activation of JNK requires both MKK4 (not included in this subfamily) and MKK7. MKK7 is primarily activated by cytokines. MKK7 is essential for liver formation during embryogenesis. It plays roles in G2/M cell cycle arrest and cell growth. In addition, it is involved in the control of programmed cell death, which is crucial in oncogenesis, cancer chemoresistance, and antagonism to TNFalpha-induced killing, through its inhibition by Gadd45beta and the subsequent suppression of the JNK cascade. Length = 296

>gnl|CDD|132984 cd06653, STKc_MEKK3_like_1, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 41.2 bits (96), Expect = 8e-04
 Identities = 43/165 (26%), Positives = 71/165 (43%), Gaps = 34/165 (20%)

Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
           Q+L+GV++L+ +   HRD+K  NIL D + +     + + DFG+S   K   ++  S   
Sbjct: 114 QILQGVSYLHSNMIVHRDIKGANILRDSAGN-----VKLGDFGAS---KRIQTICMSGTG 165

Query: 408 IE-LGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTDY 465
           I+ + G    M+PEV        S   Y  K+D W+      E+     P+       +Y
Sbjct: 166 IKSVTGTPYWMSPEV-------ISGEGYGRKADVWSVACTVVEMLTEKPPW------AEY 212

Query: 466 EVNAL----------PQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
           E  A           P L   V +  R  + ++   +   RP+AE
Sbjct: 213 EAMAAIFKIATQPTKPMLPDGVSDACRDFLKQIFVEE-KRRPTAE 256

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 264

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 41.0 bits (96), Expect = 9e-04
 Identities = 47/186 (25%), Positives = 73/186 (39%), Gaps = 30/186 (16%)

Query: 323 NTDLRNYLRERCAQLSMHERVLLF--TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNT 380
             +L +YLRE C +  ++  VLL+  TQ+   + +L      HRDL + N L+   E++ 
Sbjct: 86  YGNLLDYLRE-CNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLV--GENHL 142

Query: 381 CPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAW 440
              + + DFG S          ++ A       +   APE       L       KSD W
Sbjct: 143 ---VKVADFGLSRLMTGDTYTAHAGAKFP----IKWTAPE------SLAYNKFSIKSDVW 189

Query: 441 TAGTVAYEIFGHDNPFYQSARNTD--------YEVNALPQLNTNVPEVMRRLVAKLLEND 492
             G + +EI  +    Y     +         Y +         V E+MR       + +
Sbjct: 190 AFGVLLWEIATYGMSPYPGIDLSQVYELLEKGYRMERPEGCPPKVYELMR----ACWQWN 245

Query: 493 PSDRPS 498
           PSDRPS
Sbjct: 246 PSDRPS 251

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

 Score = 41.1 bits (96), Expect = 0.001
 Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 27/132 (20%)

Query: 334 CAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLV--ITDFGS 391
             QL++ + + + +Q+  G+ +L      HRDL + N L+          LV  I DFG 
Sbjct: 116 PGQLTLGQMLAIASQIASGMVYLASLHFVHRDLATRNCLVG-------QGLVVKIGDFGM 168

Query: 392 SYTNKSGLSMQYSSADIELGGNVAL----MAPEVALATPGLFSFVNYSKSDAWTAGTVAY 447
           S          YS+    +GG   L    M PE  L     F+    ++SD W+ G V +
Sbjct: 169 SRD-------IYSTDYYRVGGRTMLPIRWMPPESILYRK--FT----TESDIWSFGVVLW 215

Query: 448 EIFGH-DNPFYQ 458
           EIF +   P+YQ
Sbjct: 216 EIFTYGKQPWYQ 227

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. Length = 280

>gnl|CDD|143363 cd07858, STKc_TEY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 40/140 (28%), Positives = 60/140 (42%), Gaps = 31/140 (22%)

Query: 318 LMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSE 377
           LM   +TDL   +R        H +  L+ QLL G+ +++     HRDLK  N+LL+ + 
Sbjct: 90  LM---DTDLHQIIRSSQTLSDDHCQYFLY-QLLRGLKYIHSANVLHRDLKPSNLLLNANC 145

Query: 378 DNTCPQLVITDFGSSYTN--KSGLSMQYSSADIELGGNVALM---APEVALATPGLFSFV 432
           D     L I DFG + T   K     +Y          V      APE+      L +  
Sbjct: 146 D-----LKICDFGLARTTSEKGDFMTEY----------VVTRWYRAPEL------LLNCS 184

Query: 433 NYSKS-DAWTAGTVAYEIFG 451
            Y+ + D W+ G +  E+ G
Sbjct: 185 EYTTAIDVWSVGCIFAELLG 204

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. This subfamily represents the TEY subtype and is further subdivided into three groups (A, B, and C). Group A is represented by AtMPK3, AtMPK6, Nicotiana tabacum BTF4 (NtNTF4), among others. They are mostly involved in environmental and hormonal responses. AtMPK3 and AtMPK6 are also key regulators for stomatal development and patterning. Group B is represented by AtMPK4, AtMPK13, and NtNTF6, among others. They may be involved in both cell division and environmental stress response. AtMPK4 also participates in regulating innate immunity. Group C is represented by AtMPK1, AtMPK2, NtNTF3, Oryza sativa MAPK4 (OsMAPK4), among others. They may also be involved in stress responses. AtMPK1 and AtMPK2 are activated following mechanical injury and in the presence of stress chemicals such as jasmonic acid, hydrogen peroxide and abscisic acid. OsMAPK4 is also called OsMSRMK3 for Multiple Stress-Responsive MAPK3. Length = 337

>gnl|CDD|173680 cd05589, STKc_PKN, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 45/156 (28%), Positives = 67/156 (42%), Gaps = 36/156 (23%)

Query: 352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELG 411
           G+ +L+ ++  +RDLK DN+LLD     T   + I DFG     K G  M +        
Sbjct: 113 GLQYLHENKIVYRDLKLDNLLLD-----TEGFVKIADFGLC---KEG--MGFGDRTSTFC 162

Query: 412 GNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYE---- 466
           G    +APEV   T       +Y+++ D W  G + YE+   ++PF       D E    
Sbjct: 163 GTPEFLAPEVLTET-------SYTRAVDWWGLGVLIYEMLVGESPF----PGDDEEEVFD 211

Query: 467 --VNALPQ----LNTNVPEVMRRLVAKLLENDPSDR 496
             VN   +    L+     +MRR    LL  +P  R
Sbjct: 212 SIVNDEVRYPRFLSREAISIMRR----LLRRNPERR 243

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved in many biological processes including cytokeletal regulation, cell adhesion, vesicle transport, glucose transport, regulation of meiotic maturation and embryonic cell cycles, signaling to the nucleus, and tumorigenesis. Length = 324

>gnl|CDD|143383 cd07878, STKc_p38beta_MAPK11, Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

 Score = 41.2 bits (96), Expect = 0.001
 Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 32/132 (24%)

Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL--DCSEDNTCP 382
           DL N ++  C +LS      L  QLL G+ +++     HRDLK  N+ +  DC       
Sbjct: 105 DLNNIVK--CQKLSDEHVQFLIYQLLRGLKYIHSAGIIHRDLKPSNVAVNEDC------- 155

Query: 383 QLVITDFGSSYTNKSGLSMQYSSADIELGGNVA---LMAPEVALATPGLFSFVNYSKS-D 438
           +L I DF        GL+ Q   AD E+ G VA     APE+ L      ++++Y+++ D
Sbjct: 156 ELRILDF--------GLARQ---ADDEMTGYVATRWYRAPEIML------NWMHYNQTVD 198

Query: 439 AWTAGTVAYEIF 450
            W+ G +  E+ 
Sbjct: 199 IWSVGCIMAELL 210

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is widely expressed in tissues and shows more similarity with p38alpha than with the other isoforms. Both are sensitive to pyridinylimidazoles and share some common substrates such as MAPK activated protein kinase 2 (MK2) and the transcription factors ATF2, c-Fos and, ELK-1. p38beta is involved in regulating the activation of the cyclooxygenase-2 promoter and the expression of TGFbeta-induced alpha-smooth muscle cell actin. Length = 343

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 41.0 bits (97), Expect = 0.001
 Identities = 65/319 (20%), Positives = 101/319 (31%), Gaps = 129/319 (40%)

Query: 238 AILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVV----------VMHFAFTDFVPS 287
           AI K M K+     + + L E   + S+  L  HPN+V           ++F F +++  
Sbjct: 28  AI-KKMKKKFYSWEECMNLRE---VKSLRKLNEHPNIVKLKEVFRENDELYFVF-EYM-- 80

Query: 288 IPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDL------RNYLRERCAQLSMHE 341
                                     +L+ LMK            R+ +           
Sbjct: 81  ------------------------EGNLYQLMKDRKGKPFSESVIRSIIY---------- 106

Query: 342 RVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG--------SSY 393
                 Q+L+G+ H++ H   HRDLK +N+L   S       + I DFG          Y
Sbjct: 107 ------QILQGLAHIHKHGFFHRDLKPENLL--VSGPEV---VKIADFGLAREIRSRPPY 155

Query: 394 TNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIF-- 450
           T+       Y S            APE+ L +       +YS   D W  G +  E++  
Sbjct: 156 TD-------YVSTR-------WYRAPEILLRST------SYSSPVDIWALGCIMAELYTL 195

Query: 451 --------------------GHDNPF-----YQSARNTDY-----EVNALPQLNTNVPEV 480
                               G          Y+ A    +        +L QL  N    
Sbjct: 196 RPLFPGSSEIDQLYKICSVLGTPTKQDWPEGYKLASKLGFRFPQFAPTSLHQLIPNASPE 255

Query: 481 MRRLVAKLLENDPSDRPSA 499
              L+  +L  DP  RP+A
Sbjct: 256 AIDLIKDMLRWDPKKRPTA 274

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|133193 cd05062, PTKc_IGF-1R, Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

 Score = 40.8 bits (95), Expect = 0.001
 Identities = 50/205 (24%), Positives = 86/205 (41%), Gaps = 41/205 (20%)

Query: 314 SLFILMKKYNTDLRNYLRERCAQL---------SMHERVLLFTQLLEGVTHLNMHRTAHR 364
           +L I+      DL++YLR    ++         S+ + + +  ++ +G+ +LN ++  HR
Sbjct: 84  TLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLNANKFVHR 143

Query: 365 DLKSDNILLDCSEDNTCPQLVITDFG-------SSYTNKSGLSMQYSSADIELGGNVALM 417
           DL + N ++  +ED T   + I DFG       + Y  K G  +            V  M
Sbjct: 144 DLAARNCMV--AEDFT---VKIGDFGMTRDIYETDYYRKGGKGLL----------PVRWM 188

Query: 418 APEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD----YEVNALPQL 473
           +PE      G+F+    + SD W+ G V +EI       YQ   N           L   
Sbjct: 189 SPES--LKDGVFT----TYSDVWSFGVVLWEIATLAEQPYQGMSNEQVLRFVMEGGLLDK 242

Query: 474 NTNVPEVMRRLVAKLLENDPSDRPS 498
             N P+++  L+    + +P  RPS
Sbjct: 243 PDNCPDMLFELMRMCWQYNPKMRPS 267

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, where it is frequently overexpressed, IGF-1R is implicated in proliferation, the suppression of apoptosis, invasion, and metastasis. IGF-1R is being developed as a therapeutic target in cancer treatment. Length = 277

>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 8/68 (11%)

Query: 325 DLRNYLRERCAQLSMHERVL--LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 382
           DL+ Y+ +      +   ++     QLL+G+ + + HR  HRDLK  N+L+D  E     
Sbjct: 83  DLKKYM-DSSPLTGLDPPLIKSYLYQLLQGIAYCHSHRVLHRDLKPQNLLID-REGA--- 137

Query: 383 QLVITDFG 390
            L + DFG
Sbjct: 138 -LKLADFG 144

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression while the CDK1/cyclin B complex is critical for G2 to M phase transition. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. Studies in knockout mice revealed that CDK1 can compensate for the loss of the cdk2 gene as it can also bind cyclin E and drive G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 283

>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

 Score = 40.8 bits (95), Expect = 0.001
 Identities = 43/176 (24%), Positives = 67/176 (38%), Gaps = 43/176 (24%)

Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG-------SSYTNKSGLS 400
           Q+ EG+  +      HRDL++ NIL+  S    C    I DFG       + YT + G  
Sbjct: 110 QIAEGMAFIEQRNYIHRDLRAANILV--SASLVCK---IADFGLARVIEDNEYTAREGAK 164

Query: 401 MQYSSADIELGGNVALMAPEVALATPGLFSFVNYS----KSDAWTAGTVAYEIFGHDNPF 456
                        +   APE           +N+     KSD W+ G +  EI  +    
Sbjct: 165 FP-----------IKWTAPEA----------INFGSFTIKSDVWSFGILLMEIVTYGRIP 203

Query: 457 YQSARNTDYEVNALP-----QLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQ 507
           Y    N +  + AL          N PE +  ++ +  +N P +RP+ E   +V  
Sbjct: 204 YPGMSNPEV-IRALERGYRMPRPENCPEELYNIMMRCWKNRPEERPTFEYIQSVLD 258

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Hck is present in myeloid and lymphoid cells that play a role in the development of cancer. It may be important in the oncogenic signaling of the protein Tel-Abl, which induces a chronic myelogenous leukemia (CML)-like disease. Hck also acts as a negative regulator of granulocyte colony-stimulating factor (G-CSF)-induced proliferation of granulocytic precursors, suggesting a possible role in the development of acute myeloid leukemia (AML). In addition, Hck is essential in regulating the degranulation of polymorphonuclear leukocytes (PMNs). Genetic polymorphisms affect the expression level of Hck, which affects PMN mediator release and influences the development of chronic obstructive pulmonary disease (COPD). Length = 260

>gnl|CDD|88524 cd05623, STKc_MRCK_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

 Score = 40.8 bits (95), Expect = 0.001
 Identities = 44/187 (23%), Positives = 77/187 (41%), Gaps = 24/187 (12%)

Query: 314 SLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNIL 372
           +L+++M  Y   DL   L +   +L          +++  +  ++     HRD+K DNIL
Sbjct: 75  NLYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVIAIDSVHQLHYVHRDIKPDNIL 134

Query: 373 LDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALAT---PGLF 429
           +D +       + + DFGS        ++Q S A     G    ++PE+  A     G +
Sbjct: 135 MDMNG-----HIRLADFGSCLKLMEDGTVQSSVA----VGTPDYISPEILQAMEDGKGKY 185

Query: 430 SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY-------EVNALPQLNTNVPEVMR 482
                 + D W+ G   YE+   + PFY  +    Y       E    P   T+V E  +
Sbjct: 186 G----PECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHKERFQFPAQVTDVSEDAK 241

Query: 483 RLVAKLL 489
            L+ +L+
Sbjct: 242 DLIRRLI 248

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathway. Length = 332

>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 54/224 (24%), Positives = 92/224 (41%), Gaps = 53/224 (23%)

Query: 314 SLFILMKKYNTDLRNYLR-ERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNIL 372
            L+++ +  + DL+ ++     + + +        QLL+G+   + HR  HRDLK  N+L
Sbjct: 73  KLYLVFEFLHQDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLL 132

Query: 373 LDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVAL--MAPEVALATPGLFS 430
           +     NT   + + DFG       G+ ++  + ++     V L   APE+ L       
Sbjct: 133 I-----NTEGAIKLADFG--LARAFGVPVRTYTHEV-----VTLWYRAPEILLGCK---- 176

Query: 431 FVNYSKS-DAWTAGTVAYE------IFGHDNPFYQSAR-----NTDYE-----VNALPQL 473
              YS + D W+ G +  E      +F  D+   Q  R      T  E     V +LP  
Sbjct: 177 --YYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSLPDY 234

Query: 474 NTNVP---------------EVMRRLVAKLLENDPSDRPSAELA 502
             + P               E  R L++++L  DP+ R SA+ A
Sbjct: 235 KPSFPKWARQDFSKVVPPLDEDGRDLLSQMLHYDPNKRISAKAA 278

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. CDK2, together with CDK4, also regulates embryonic cell proliferation. Despite these important roles, mice deleted for the cdk2 gene are viable and normal except for being sterile. This may be due to compensation provided by CDK1 (also called Cdc2), which can also bind cyclin E and drive the G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 284

>gnl|CDD|183880 PRK13184, pknD, serine/threonine-protein kinase; Reviewed

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 38/157 (24%), Positives = 60/157 (38%), Gaps = 39/157 (24%)

Query: 363 HRDLKSDNILLDC-SEDNTCPQLVITDFGSSYTNK-----------SGLSMQYSSADI-- 408
           HRDLK DNILL    E      +VI D+G++   K              ++ YSS  I  
Sbjct: 136 HRDLKPDNILLGLFGE------VVILDWGAAIFKKLEEEDLLDIDVDERNICYSSMTIPG 189

Query: 409 ELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVN 468
           ++ G    MAPE  L  P          +D +  G + Y++     P+    R       
Sbjct: 190 KIVGTPDYMAPERLLGVPA------SESTDIYALGVILYQMLTLSFPY----RRKKGRKI 239

Query: 469 ALPQL---------NTNVPEVMRRLVAKLLENDPSDR 496
           +   +            +P  + ++  K L  DP++R
Sbjct: 240 SYRDVILSPIEVAPYREIPPFLSQIAMKALAVDPAER 276

Length = 932

>gnl|CDD|173686 cd05595, STKc_PKB_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

 Score = 40.8 bits (95), Expect = 0.001
 Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 22/153 (14%)

Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
           +++  + +L+     +RD+K +N++LD  +D     + ITDFG     K G+S   +   
Sbjct: 103 EIVSALEYLHSRDVVYRDIKLENLMLD--KDG---HIKITDFGLC---KEGISDGATMK- 153

Query: 408 IELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYE 466
               G    +APEV           +Y ++ D W  G V YE+     PFY       +E
Sbjct: 154 -TFCGTPEYLAPEV-------LEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFE 205

Query: 467 VNALPQL---NTNVPEVMRRLVAKLLENDPSDR 496
           +  + ++    T  PE  + L+A LL+ DP  R
Sbjct: 206 LILMEEIRFPRTLSPEA-KSLLAGLLKKDPKQR 237

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in PKB-beta display normal growth weights but exhibit severe insulin resistance and diabetes, accompanied by lipoatrophy and B-cell failure. Length = 323

>gnl|CDD|143341 cd07836, STKc_Pho85, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 52/235 (22%), Positives = 87/235 (37%), Gaps = 75/235 (31%)

Query: 313 MSLFILMKKYNTDLRNYLR---ERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSD 369
           M +F  M K   DL+ Y+     R A      +   + QLL+G+   + +R  HRDLK  
Sbjct: 74  MLVFEYMDK---DLKKYMDTHGVRGALDPNTVKSFTY-QLLKGIAFCHENRVLHRDLKPQ 129

Query: 370 NILLDCSEDNTCPQLVITDFG---------SSYTNKSGLSMQYSSADIELGGNVALMAPE 420
           N+L+     N   +L + DFG         ++++N+  +++ Y + D+ LG         
Sbjct: 130 NLLI-----NKRGELKLADFGLARAFGIPVNTFSNEV-VTLWYRAPDVLLGSRT------ 177

Query: 421 VALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDY-------------- 465
                        YS S D W+ G +  E+     P +    N D               
Sbjct: 178 -------------YSTSIDIWSVGCIMAEMIT-GRPLFPGTNNEDQLLKIFRIMGTPTES 223

Query: 466 ---EVNALPQLNTNVPEVMRR---------------LVAKLLENDPSDRPSAELA 502
               ++ LP+     P    +               L+ +LL+ +P  R SA  A
Sbjct: 224 TWPGISQLPEYKPTFPRYPPQDLQQLFPHADPLGIDLLHRLLQLNPELRISAHDA 278

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. It is not essential for yeast viability and is the functional homolog of mammalian CDK5, which plays a role in central nervous system development. Length = 284

>gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 46/192 (23%), Positives = 81/192 (42%), Gaps = 33/192 (17%)

Query: 326 LRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLV 385
           L+ YL     ++++ +++    Q+ +G+ +L   +  HRDL + N+L++ SE     Q+ 
Sbjct: 95  LKEYLPRNKNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVE-SEH----QVK 149

Query: 386 ITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTV 445
           I DFG +   ++    +Y +   +L   V   APE  + +     F  Y  SD W+ G  
Sbjct: 150 IGDFGLTKAIET--DKEYYTVKDDLDSPVFWYAPECLIQS----KF--YIASDVWSFGVT 201

Query: 446 AYEIFGHDNPFYQS-----------------AR--NTDYEVNALPQLNTNVPEVMRRLVA 486
            YE+  + +                       R      E   LP+   N PE + +L+ 
Sbjct: 202 LYELLTYCDSESSPMTLFLKMIGPTHGQMTVTRLVRVLEEGKRLPR-PPNCPEEVYQLMR 260

Query: 487 KLLENDPSDRPS 498
           K  E  PS R +
Sbjct: 261 KCWEFQPSKRTT 272

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak1 is widely expressed in many tissues. Many cytokines are dependent on Jak1 for signaling, including those that use the shared receptor subunits common gamma chain (IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M, G-CSF, and IFNs, among others). The many varied interactions of Jak1 and its ubiquitous expression suggest many biological roles. Jak1 is important in neurological development, as well as in lymphoid development and function. It also plays a role in the pathophysiology of cardiac hypertrophy and heart failure. A mutation in the ATP-binding site of Jak1 was identified in a human uterine leiomyosarcoma cell line, resulting in defective cytokine induction and antigen presentation, thus allowing the tumor to evade the immune system. Length = 284

>gnl|CDD|173712 cd05622, STKc_ROCK1, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

 Score = 40.8 bits (95), Expect = 0.002
 Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 13/96 (13%)

Query: 363 HRDLKSDNILLDCSEDNTCPQLVITDFGSSYT-NKSGLSMQYSSADIELGGNVALMAPEV 421
           HRD+K DN+LLD S       L + DFG+    NK G+    ++      G    ++PEV
Sbjct: 165 HRDVKPDNMLLDKSG-----HLKLADFGTCMKMNKEGMVRCDTAV-----GTPDYISPEV 214

Query: 422 ALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFY 457
            L + G   +    + D W+ G   YE+   D PFY
Sbjct: 215 -LKSQGGDGYYG-RECDWWSVGVFLYEMLVGDTPFY 248

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, and kidney. It mediates signaling from Rho to the actin cytoskeleton. It is implicated in the development of cardiac fibrosis, cardiomyocyte apoptosis, and hyperglycemia. Mice deficient with ROCK1 display eyelids open at birth (EOB) and omphalocele phenotypes due to the disorganization of actin filaments in the eyelids and the umbilical ring. Length = 371

>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 35/150 (23%), Positives = 56/150 (37%), Gaps = 24/150 (16%)

Query: 352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELG 411
           G+  L+     +RDLK DN+LLD   +       I DFG     K G  +          
Sbjct: 108 GLQFLHERGIIYRDLKLDNVLLD--SEGHIK---IADFGMC---KEG--ILGGVTTSTFC 157

Query: 412 GNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYEVNAL 470
           G    +APE+    P       Y  + D W  G + YE+    +PF     + D    ++
Sbjct: 158 GTPDYIAPEILSYQP-------YGPAVDWWALGVLLYEMLAGQSPF--EGDDEDELFQSI 208

Query: 471 PQLNTNVPEVMRR----LVAKLLENDPSDR 496
            +     P  + +    ++   L  +P  R
Sbjct: 209 LEDEVRYPRWLSKEAKSILKSFLTKNPEKR 238

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only require PS. PKCs phosphorylate and modify the activities of a wide variety of cellular proteins including receptors, enzymes, cytoskeletal proteins, transcription factors, and other kinases. They play a central role in signal transduction pathways that regulate cell migration and polarity, proliferation, differentiation, and apoptosis. Also included in this subfamily are the PKC-like proteins, called PKNs. Length = 318

>gnl|CDD|143342 cd07837, STKc_CdkB_plant, Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 30/112 (26%), Positives = 55/112 (49%), Gaps = 18/112 (16%)

Query: 314 SLFILMKKYNTDLRNYL--RERCAQLSMHERVL--LFTQLLEGVTHLNMHRTAHRDLKSD 369
           SL+++ +  ++DL+ ++    R     +  + +     QLL+GV H + H   HRDLK  
Sbjct: 80  SLYLVFEYLDSDLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHKHGVMHRDLKPQ 139

Query: 370 NILLDCSEDNTCPQLVITDFG---------SSYTNKSGLSMQYSSADIELGG 412
           N+L+D  +      L I D G          SYT++  +++ Y + ++ LG 
Sbjct: 140 NLLVDKQKG----LLKIADLGLGRAFSIPVKSYTHEI-VTLWYRAPEVLLGS 186

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developmental pathways, such as stomata and leaf development. CdkB has been shown to associate with both cyclin B, which controls G2/M transition, and cyclin D, which acts as a mediator in linking extracellular signals to the cell cycle. Length = 295

>gnl|CDD|177649 PLN00009, PLN00009, cyclin-dependent kinase A; Provisional

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 7/78 (8%)

Query: 315 LFILMKKYNTDLRNYLRERCAQLSMHERVL--LFTQLLEGVTHLNMHRTAHRDLKSDNIL 372
           L+++ +  + DL+ ++ +     + + R++     Q+L G+ + + HR  HRDLK  N+L
Sbjct: 76  LYLVFEYLDLDLKKHM-DSSPDFAKNPRLIKTYLYQILRGIAYCHSHRVLHRDLKPQNLL 134

Query: 373 LDCSEDNTCPQLVITDFG 390
           +D   +     L + DFG
Sbjct: 135 IDRRTN----ALKLADFG 148

Length = 294

>gnl|CDD|133175 cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 52/245 (21%), Positives = 91/245 (37%), Gaps = 51/245 (20%)

Query: 211 VVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPP 270
           ++ E TF  + Y +  + +          +K +      ++  L L E  L+  +     
Sbjct: 13  LLQEGTFGRIFYGI--LIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGL----S 66

Query: 271 HPNVV-VMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNY 329
           H N++ ++H    D  P             P  L P   +G        +K +    R  
Sbjct: 67  HQNILPILHVCIEDGEP-------------PFVLYPYMNWGN-------LKLFLQQCRLG 106

Query: 330 LRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDF 389
                  LS  + V +  Q+  G+++L+     H+D+ + N ++D        Q+ ITD 
Sbjct: 107 EANNPQALSTQQLVHMAIQIACGMSYLHKRGVIHKDIAARNCVIDEEL-----QVKITD- 160

Query: 390 GSSYTNKSGLSMQYSSADIE-LGGN----VALMAPEVALATPGLFSFVNYSKSDAWTAGT 444
                  + LS      D   LG N    V  MA E +L     +S    S SD W+ G 
Sbjct: 161 -------NALSRDLFPMDYHCLGDNENRPVKWMALE-SLVNK-EYS----SASDVWSFGV 207

Query: 445 VAYEI 449
           + +E+
Sbjct: 208 LLWEL 212

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It acts as a chemorepulsive axon guidance receptor of Wnt glycoproteins and is responsible for the establishment of axon tracts during the development of the central nervous system. In addition, studies in mice reveal that Ryk is essential in skeletal, craniofacial, and cardiac development. Thus, it appears Ryk is involved in signal transduction despite its lack of kinase activity. Ryk may function as an accessory protein that modulates the signals coming from catalytically active partner RTKs such as the Eph receptors. Length = 280

>gnl|CDD|143384 cd07879, STKc_p38delta_MAPK13, Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 41/147 (27%), Positives = 65/147 (44%), Gaps = 34/147 (23%)

Query: 310 GRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKS 368
           G     F L+  Y  TDL+   +     LS  +   L  Q+L G+ +++     HRDLK 
Sbjct: 89  GDEFQDFYLVMPYMQTDLQ---KIMGHPLSEDKVQYLVYQMLCGLKYIHSAGIIHRDLKP 145

Query: 369 DNILL--DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVA---LMAPEVAL 423
            N+ +  DC       +L I DFG +             AD E+ G V      APEV L
Sbjct: 146 GNLAVNEDC-------ELKILDFGLA-----------RHADAEMTGYVVTRWYRAPEVIL 187

Query: 424 ATPGLFSFVNYSKS-DAWTAGTVAYEI 449
                 ++++Y+++ D W+ G +  E+
Sbjct: 188 ------NWMHYNQTVDIWSVGCIMAEM 208

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13, is found in skeletal muscle, heart, lung, testis, pancreas, and small intestine. It regulates microtubule function by phosphorylating Tau. It activates the c-jun promoter and plays a role in G2 cell cycle arrest. It also controls the degration of c-Myb, which is associated with myeloid leukemia and poor prognosis in colorectal cancer. p38delta is the main isoform involved in regulating the differentiation and apoptosis of keratinocytes. Length = 342

>gnl|CDD|173687 cd05596, STKc_ROCK, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 33/106 (31%), Positives = 48/106 (45%), Gaps = 15/106 (14%)

Query: 363 HRDLKSDNILLDCSEDNTCPQLVITDFGSSY-TNKSGLSMQYSSADIELGGNVALMAPEV 421
           HRD+K DN+LLD S       L + DFG+    + +G  M      +   G    ++PEV
Sbjct: 165 HRDVKPDNMLLDKSG-----HLKLADFGTCMKMDANG--MVRCDTAV---GTPDYISPEV 214

Query: 422 ALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYE 466
            L + G   +  Y +  D W+ G   YE+   D PFY  +    Y 
Sbjct: 215 -LKSQGGDGY--YGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYS 257

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via interaction with Rho GTPases and is involved in many cellular functions including contraction, adhesion, migration, motility, proliferation, and apoptosis. The ROCK subfamily consists of two isoforms, ROCK1 and ROCK2, which may be functionally redundant in some systems, but exhibit different tissue distributions. Both isoforms are ubiquitously expressed in most tissues, but ROCK2 is more prominent in brain and skeletal muscle while ROCK1 is more pronounced in the liver, testes, and kidney. Studies in knockout mice result in different phenotypes, suggesting that the two isoforms do not compensate for each other during embryonic development. Length = 370

>gnl|CDD|132989 cd06658, STKc_PAK5, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 21/157 (13%)

Query: 349 LLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADI 408
           +L  +++L+     HRD+KSD+ILL  + D    ++ ++DFG        +  + S    
Sbjct: 127 VLRALSYLHNQGVIHRDIKSDSILL--TSDG---RIKLSDFGFCAQVSKEVPKRKS---- 177

Query: 409 ELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFY-----QSARNT 463
            L G    MAPEV    P        ++ D W+ G +  E+   + P++     Q+ R  
Sbjct: 178 -LVGTPYWMAPEVISRLP------YGTEVDIWSLGIMVIEMIDGEPPYFNEPPLQAMRRI 230

Query: 464 DYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
              +    + +  V  V+R  +  +L  +PS R +A+
Sbjct: 231 RDNLPPRVKDSHKVSSVLRGFLDLMLVREPSQRATAQ 267

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly expressed in the brain. It is not required for viability, but together with PAK6, it is required for normal levels of locomotion and activity, and for learning and memory. PAK5 cooperates with Inca (induced in neural crest by AP2) in the regulation of cell adhesion and cytoskeletal organization in the embryo and in neural crest cells during craniofacial development. PAK5 may also play a role in controlling the signaling of Raf-1, an effector of Ras, at the mitochondria. Length = 292

>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

 Score = 39.4 bits (92), Expect = 0.003
 Identities = 71/312 (22%), Positives = 123/312 (39%), Gaps = 91/312 (29%)

Query: 204 IAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDML 261
           I +G+  +V  AT +  G + A+K M           + K   +ELL        NE ++
Sbjct: 27  IGEGSTGIVCIATDKSTGRQVAVKKM----------DLRKQQRRELL-------FNEVVI 69

Query: 262 MNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKK 321
           M        HPN+V M+            S L+                    L+++M+ 
Sbjct: 70  MRDY----QHPNIVEMY-----------SSYLV-----------------GDELWVVMEF 97

Query: 322 YN----TDLRNYLRERCAQLSMHERVL--LFTQLLEGVTHLNMHRTAHRDLKSDNILLDC 375
                 TD+  + R       M+E  +  +   +L+ ++ L+     HRD+KSD+ILL  
Sbjct: 98  LEGGALTDIVTHTR-------MNEEQIATVCLAVLKALSFLHAQGVIHRDIKSDSILL-- 148

Query: 376 SEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY- 434
           + D     + ++DFG        +  + S     L G    MAPEV    P       Y 
Sbjct: 149 TSDGR---VKLSDFGFCAQVSKEVPRRKS-----LVGTPYWMAPEVISRLP-------YG 193

Query: 435 SKSDAWTAGTVAYEIFGHDNPFY-----QSARNTDYEVNALPQLNT--NVPEVMRRLVAK 487
           ++ D W+ G +  E+   + P++     Q+ +      N  P+L     V   +R  + +
Sbjct: 194 TEVDIWSLGIMVIEMVDGEPPYFNEPPLQAMKRI--RDNLPPKLKNLHKVSPRLRSFLDR 251

Query: 488 LLENDPSDRPSA 499
           +L  DP+ R +A
Sbjct: 252 MLVRDPAQRATA 263

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs found in group I PAKs, such as an AID (autoinhibitory domain) and SH3 binding sites. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. While group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX, no such binding has been demonstrated for group II PAKs. Some known substrates of group II PAKs are also substrates of group I PAKs such as Raf, BAD, LIMK and GEFH1. Unique group II substrates include MARK/Par-1 and PDZ-RhoGEF. Group II PAKs play important roles in filopodia formation, neuron extension, cytoskeletal organization, and cell survival. Length = 285

>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

 Score = 39.4 bits (92), Expect = 0.003
 Identities = 53/205 (25%), Positives = 78/205 (38%), Gaps = 62/205 (30%)

Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
           Q+L G+ +++     HRDLK  NIL++ + D     L I DFG +              D
Sbjct: 116 QILRGLKYVHSAGVVHRDLKPSNILINENCD-----LKICDFGLARIQ-----------D 159

Query: 408 IELGGNVA---LMAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIF---------GHDN 454
            ++ G V+     APE+ L      ++  Y  + D W+AG +  E+           H N
Sbjct: 160 PQMTGYVSTRYYRAPEIML------TWQKYDVEVDIWSAGCIFAEMLEGKPLFPGKDHVN 213

Query: 455 PFYQ----------------SARNTDYEVNALPQLN--------TNVPEVMRRLVAKLLE 490
            F                   + NT   V +LP+           N       L+ K+L 
Sbjct: 214 QFSIITDLLGTPPDDVINTICSENTLRFVQSLPKREPVPFSEKFKNADPSAIDLLEKMLV 273

Query: 491 NDPSDRPSAELAATVCQLYLWAPKH 515
            DP  R SA  A  +   YL AP H
Sbjct: 274 FDPQKRISAAEA--LAHPYL-APYH 295

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and UV radiation. Sty1 is regulated by the MAP2K Wis1, which is activated by the MAP3Ks Wis4 and Win1, which receive signals of the stress condition from membrane-spanning histidine kinases Mak1-3. Activated Sty1 stabilizes the Atf1 transcription factor and induces transcription of Atf1-dependent genes of the core environmetal stress response (CESR). Hog1 is the key element in the high osmolarity glycerol (HOG) pathway and is activated upon hyperosmotic stress. Activated Hog1 accumulates in the nucleus and regulates stress-induced transcription. The HOG pathway is mediated by two transmembrane osmosensors, Sln1 and Sho1. Length = 328

>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

 Score = 39.2 bits (91), Expect = 0.004
 Identities = 42/148 (28%), Positives = 62/148 (41%), Gaps = 32/148 (21%)

Query: 311 RNMSLFILMKKYNTDLRNYLRERCAQ-LSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSD 369
           R   + ++ +  + DLR YL +     L       L  Q L G+  L+ +   HRDLK +
Sbjct: 78  RETKVTLVFEHVDQDLRTYLDKVPPPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPE 137

Query: 370 NILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALM---APEVAL--- 423
           NIL+      +  Q+ + DF        GL+  Y S  + L   V  +   APEV L   
Sbjct: 138 NILV-----TSGGQVKLADF--------GLARIY-SCQMALTPVVVTLWYRAPEVLLQST 183

Query: 424 -ATPGLFSFVNYSKSDAWTAGTVAYEIF 450
            ATP           D W+ G +  E+F
Sbjct: 184 YATP----------VDMWSVGCIFAEMF 201

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the nucleus. CDK4 also shows kinase activity towards Smad3, a signal transducer of transforming growth factor (TGF)-beta signaling which modulates transcription and plays a role in cell proliferation and apoptosis. CDK4 is inhibited by the p21 inhibitor and is specifically mutated in human melanoma. Length = 288

>gnl|CDD|173700 cd05609, STKc_MAST, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

 Score = 39.4 bits (92), Expect = 0.004
 Identities = 47/187 (25%), Positives = 77/187 (41%), Gaps = 42/187 (22%)

Query: 344 LLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQY 403
           + F + +  + +L+ +   HRDLK DN+L+      +   + +TDFG S   K GL M  
Sbjct: 105 MYFAETVLALEYLHNYGIVHRDLKPDNLLI-----TSMGHIKLTDFGLS---KIGL-MSL 155

Query: 404 SS--------------ADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYE 448
           ++               D ++ G    +APEV L          Y K  D W  G + YE
Sbjct: 156 TTNLYEGHIEKDTREFLDKQVCGTPEYIAPEVILRQ-------GYGKPVDWWAMGIILYE 208

Query: 449 IFGHDNPFYQSARNTDYEVNA--------LPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
                 PF+    +T  E+           P+ +  +P   + L+++LL  +P +R    
Sbjct: 209 FLVGCVPFFG---DTPEELFGQVISDDIEWPEGDEALPADAQDLISRLLRQNPLERLGTG 265

Query: 501 LAATVCQ 507
            A  V Q
Sbjct: 266 GAFEVKQ 272

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. MAST1, MAST2, and MAST3 bind and phosphorylate the tumor suppressor PTEN, and may contribute to the regulation and stabilization of PTEN. MAST2 is involved in the regulation of the Fc-gamma receptor of the innate immune response in macrophages, and may also be involved in the regulation of the Na+/H+ exchanger NHE3. Length = 305

>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

 Score = 39.2 bits (91), Expect = 0.004
 Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 25/134 (18%)

Query: 331 RERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLV-ITDF 389
           R+   +L + + + + +Q+  G+ +L      HRDL + N L+  +       LV I DF
Sbjct: 114 RQAKGELGLSQMLHIASQIASGMVYLASQHFVHRDLATRNCLVGAN------LLVKIGDF 167

Query: 390 GSSYTNKSGLSMQYSSADIELGGNVAL----MAPEVALATPGLFSFVNYSKSDAWTAGTV 445
           G S          YS+    +GG+  L    M PE  +     F+    ++SD W+ G +
Sbjct: 168 GMSRD-------VYSTDYYRVGGHTMLPIRWMPPESIMYRK--FT----TESDVWSFGVI 214

Query: 446 AYEIFGH-DNPFYQ 458
            +EIF +   P++Q
Sbjct: 215 LWEIFTYGKQPWFQ 228

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291

>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

 Score = 39.2 bits (92), Expect = 0.004
 Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 5/43 (11%)

Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG 390
           QLLEG+ +L+ +   HRD+K+ NIL+    DN    L I DFG
Sbjct: 123 QLLEGINYLHENHILHRDIKAANILI----DNQ-GILKIADFG 160

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen as factors involved in general transcription. The BUR1/BUR2 complex phosphorylates the C-terminal domain of RNA polymerase II. In addition, this complex regulates histone modification by phosporylating Rad6 and mediating the association of the Paf1 complex with chromatin. Length = 311

>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

 Score = 38.9 bits (90), Expect = 0.004
 Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 21/158 (13%)

Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
           + L+ +  L+ ++  HRD+KSDNILL          + +TDFG      + ++ + S   
Sbjct: 124 ECLQALEFLHSNQVIHRDIKSDNILLGMDG-----SVKLTDFGFC----AQITPEQSKRS 174

Query: 408 IELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFY-QSARNTDYE 466
             + G    MAPEV   T   +      K D W+ G +A E+   + P+  ++     Y 
Sbjct: 175 -TMVGTPYWMAPEV--VTRKAYG----PKVDIWSLGIMAIEMIEGEPPYLNENPLRALYL 227

Query: 467 V--NALPQLNT--NVPEVMRRLVAKLLENDPSDRPSAE 500
           +  N  P+L     +  + R  + + L+ D   R SA+
Sbjct: 228 IATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKRGSAK 265

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK1 is important in the regulation of many cellular processes including cytoskeletal dynamics, cell motility, growth, and proliferation. Although PAK1 has been regarded mainly as a cytosolic protein, recent reports indicate that PAK1 also exists in significant amounts in the nucleus, where it is involved in transcription modulation and in cell cycle regulatory events. PAK1 is also involved in transformation and tumorigenesis. Its overexpression, hyperactivation and increased nuclear accumulation is correlated to breast cancer invasiveness and progression. Nuclear accumulation is also linked to tamoxifen resistance in breast cancer cells. Length = 296

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	588
KOG4158|consensus	598		100.0
KOG0615|consensus	475		100.0
KOG0581|consensus	364		100.0
KOG0575|consensus	592		100.0
KOG0603|consensus	612		100.0
KOG0595|consensus	429		100.0
KOG0192|consensus	362		100.0
KOG0598|consensus	357		100.0
KOG0592|consensus	604		100.0
KOG0616|consensus	355		100.0
KOG0583|consensus	370		100.0
KOG0661|consensus	538		100.0
KOG0588|consensus	786		100.0
KOG0593|consensus	396		100.0
KOG0591|consensus	375		100.0
KOG0600|consensus	560		100.0
KOG0197|consensus	468		100.0
KOG0585|consensus	576		100.0
KOG0198|consensus	313		100.0
KOG0599|consensus	411		100.0
KOG0605|consensus	550		100.0
KOG0582|consensus	516		100.0
KOG0578|consensus	550		100.0
KOG0033|consensus	355		100.0
KOG0580|consensus	281		100.0
KOG0659|consensus	318		100.0
KOG0597|consensus	808		100.0
PTZ00263	329	protein kinase A catalytic subunit; Provisional	100.0
KOG0663|consensus	419		100.0
KOG4721|consensus	904		100.0
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	100.0
KOG0032|consensus	382		100.0
KOG0660|consensus	359		100.0
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	100.0
KOG0611|consensus	668		100.0
KOG0193|consensus	678		100.0
KOG0694|consensus	694		100.0
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	100.0
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	100.0
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	100.0
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	100.0
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	100.0
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	100.0
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	100.0
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	100.0
PTZ00036	440	glycogen synthase kinase; Provisional	100.0
KOG0658|consensus	364		100.0
KOG1187|consensus	361		100.0
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	100.0
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	100.0
KOG0201|consensus	467		100.0
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	100.0
PHA02988	283	hypothetical protein; Provisional	100.0
PHA03212	391	serine/threonine kinase US3; Provisional	100.0
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	100.0
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	100.0
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	100.0
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	100.0
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	100.0
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	100.0
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	100.0
KOG4717|consensus	864		100.0
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	100.0
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	100.0
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	100.0
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	100.0
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	100.0
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	100.0
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	100.0
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	100.0
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	100.0
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	100.0
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	100.0
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	100.0
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	100.0
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	100.0
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	100.0
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	100.0
KOG0604|consensus	400		100.0
KOG0594|consensus	323		100.0
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	100.0
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	100.0
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	100.0
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	100.0
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	100.0
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	100.0
PTZ00283	496	serine/threonine protein kinase; Provisional	100.0
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	100.0
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	100.0
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	100.0
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	100.0
PLN00034	353	mitogen-activated protein kinase kinase; Provision	100.0
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	100.0
PHA03207	392	serine/threonine kinase US3; Provisional	100.0
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	100.0
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	100.0
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	100.0
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	100.0
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	100.0
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	100.0
PTZ00267	478	NIMA-related protein kinase; Provisional	100.0
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	100.0
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	100.0
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	100.0
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	100.0
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	100.0
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	100.0
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	100.0
PHA03209	357	serine/threonine kinase US3; Provisional	100.0
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	100.0
PHA03211	461	serine/threonine kinase US3; Provisional	100.0
PTZ00284	467	protein kinase; Provisional	100.0
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	100.0
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	100.0
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	100.0
KOG0194|consensus	474		100.0
KOG0596|consensus	677		100.0
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	100.0
KOG1026|consensus	774		100.0
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	100.0
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	100.0
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	100.0
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	100.0
KOG0574|consensus	502		100.0
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	100.0
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	100.0
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	100.0
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	100.0
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	100.0
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	100.0
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	100.0
KOG4279|consensus	1226		100.0
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	100.0
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	100.0
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	100.0
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	100.0
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	100.0
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	100.0
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	100.0
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	100.0
KOG0589|consensus	426		100.0
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	100.0
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	100.0
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	100.0
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	100.0
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	100.0
KOG0667|consensus	586		100.0
KOG0610|consensus	459		100.0
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	100.0
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	100.0
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	100.0
KOG0607|consensus	463		100.0
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	100.0
KOG0196|consensus	996		100.0
KOG0577|consensus	948		100.0
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	100.0
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	100.0
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	100.0
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	100.0
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	100.0
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	100.0
KOG0586|consensus	596		100.0
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	100.0
KOG1989|consensus	738		100.0
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	100.0
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	100.0
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	100.0
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	100.0
PTZ00266	1021	NIMA-related protein kinase; Provisional	100.0
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	100.0
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	100.0
KOG4236|consensus	888		100.0
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	100.0
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	100.0
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	100.0
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	100.0
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	100.0
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	100.0
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	100.0
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	100.0
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	100.0
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	100.0
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	100.0
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	100.0
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	100.0
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	100.0
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	100.0
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	100.0
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	100.0
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	100.0
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	100.0
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	100.0
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	100.0
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	100.0
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	100.0
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	100.0
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	100.0
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	100.0
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	100.0
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	100.0
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	100.0
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	100.0
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	100.0
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	100.0
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	100.0
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	100.0
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	100.0
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	100.0
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	100.0
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	100.0
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	100.0
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	100.0
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	100.0
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	100.0
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	100.0
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	100.0
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	100.0
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	100.0
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	100.0
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	100.0
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	100.0
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	100.0
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	100.0
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	100.0
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	100.0
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	100.0
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	100.0
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	100.0
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	100.0
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	100.0
KOG1095|consensus	1025		100.0
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	100.0
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	100.0
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	100.0
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	100.0
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	100.0
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	100.0
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	100.0
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	100.0
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	100.0
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	100.0
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	100.0
KOG0983|consensus	391		100.0
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	100.0
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	100.0
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	100.0
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	100.0
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	100.0
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	100.0
KOG0690|consensus	516		100.0
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	100.0
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	100.0
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	100.0
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	100.0
PLN00009	294	cyclin-dependent kinase A; Provisional	100.0
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	100.0
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	100.0
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	100.0
PHA03210	501	serine/threonine kinase US3; Provisional	100.0
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	100.0
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	100.0
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	100.0
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	100.0
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	100.0
KOG4257|consensus	974		100.0
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	100.0
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	100.0
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	100.0
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	100.0
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	100.0
KOG0612|consensus	1317		100.0
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	100.0
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	100.0
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	100.0
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	100.0
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	100.0
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	100.0
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	100.0
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	100.0
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	100.0
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	100.0
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	100.0
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	100.0
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	100.0
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	100.0
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	100.0
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	100.0
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	100.0
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	100.0
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	100.0
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	100.0
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	100.0
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	100.0
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	100.0
KOG0579|consensus	1187		100.0
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	100.0
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	100.0
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	100.0
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	100.0
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	100.0
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	100.0
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	100.0
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	100.0
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	100.0
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	100.0
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	100.0
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	100.0
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	100.0
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	100.0
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	100.0
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	100.0
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	100.0
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	100.0
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	100.0
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	100.0
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	100.0
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	100.0
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	100.0
KOG4645|consensus	1509		100.0
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	100.0
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	100.0
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	100.0
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	100.0
KOG0666|consensus	438		100.0
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	100.0
PHA02882	294	putative serine/threonine kinase; Provisional	100.0
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	100.0
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	100.0
KOG2345|consensus	302		100.0
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	100.0
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	100.0
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	100.0
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	100.0
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	100.0
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	100.0
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	100.0
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	100.0
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	100.0
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	100.0
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	100.0
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	100.0
KOG0669|consensus	376		100.0
PTZ00024	335	cyclin-dependent protein kinase; Provisional	100.0
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	100.0
KOG0986|consensus	591		100.0
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	100.0
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	100.0
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	100.0
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	100.0
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	100.0
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	100.0
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	100.0
KOG0584|consensus	632		100.0
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	100.0
KOG3653|consensus	534		100.0
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	100.0
KOG1035|consensus	1351		100.0
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	100.0
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	100.0
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	100.0
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	100.0
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	100.0
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	100.0
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	100.0
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	100.0
KOG4278|consensus	1157		100.0
KOG1094|consensus	807		100.0
KOG2052|consensus	513		100.0
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	100.0
KOG4250|consensus	732		100.0
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	100.0
KOG1027|consensus	903		100.0
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	100.0
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	100.0
KOG0696|consensus	683		100.0
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	100.0
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	100.0
KOG0199|consensus	1039		100.0
KOG0662|consensus	292		100.0
KOG0614|consensus	732		100.0
KOG0608|consensus	1034		100.0
KOG1006|consensus	361		100.0
KOG0587|consensus	953		100.0
KOG0200|consensus	609		100.0
KOG1151|consensus	775		100.0
PLN03224	507	probable serine/threonine protein kinase; Provisio	100.0
KOG0671|consensus	415		100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG1025|consensus	1177		100.0
KOG0695|consensus	593		100.0
KOG0665|consensus	369		99.98
KOG0668|consensus	338		99.98
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.97
KOG0984|consensus	282		99.97
KOG0664|consensus	449		99.97
KOG1152|consensus	772		99.97
KOG1290|consensus	590		99.97
KOG0670|consensus	752		99.97
KOG1167|consensus	418		99.96
PLN00181	793	protein SPA1-RELATED; Provisional	99.96
KOG0576|consensus	829		99.96
KOG1024|consensus	563		99.95
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.95
KOG1345|consensus	378		99.95
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.94
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.94
KOG0195|consensus	448		99.91
PRK09188	365	serine/threonine protein kinase; Provisional	99.9
KOG0590|consensus	601		99.9
KOG1164|consensus	322		99.89
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.89
KOG1163|consensus	341		99.88
KOG1165|consensus	449		99.88
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.86
KOG0603|consensus	612		99.86
KOG1240|consensus	1431		99.83
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.83
KOG0606|consensus	1205		99.82
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.81
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.8
PRK12274	218	serine/threonine protein kinase; Provisional	99.79
PRK10345	210	hypothetical protein; Provisional	99.78
KOG1033|consensus	516		99.77
KOG1023|consensus	484		99.76
KOG1166|consensus	974		99.71
smart00090	237	RIO RIO-like kinase.	99.71
PRK14879	211	serine/threonine protein kinase; Provisional	99.7
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.68
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.67
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.66
KOG0590|consensus	601		99.64
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.6
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	99.59
KOG0601|consensus	524		99.5
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.48
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	99.44
KOG1266|consensus	458		99.33
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	99.3
KOG0606|consensus	1205		99.27
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	99.19
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	99.19
KOG0601|consensus	524		99.19
KOG3087|consensus	229		99.09
KOG1243|consensus	690		98.98
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	98.92
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	98.84
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	98.84
COG4248	637	Uncharacterized protein with protein kinase and he	98.83
KOG2137|consensus	700		98.82
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	98.77
KOG0690|consensus	516		98.63
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	98.63
KOG3741|consensus	655		98.61
PRK09902	216	hypothetical protein; Provisional	98.59
COG0478	304	RIO-like serine/threonine protein kinase fused to	98.39
KOG0694|consensus	694		98.36
COG0661	517	AarF Predicted unusual protein kinase [General fun	98.36
KOG0598|consensus	357		98.3
KOG1235|consensus	538		98.06
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	98.06
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	97.85
KOG0576|consensus	829		97.79
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	97.75
PF13095	207	FTA2: Kinetochore Sim4 complex subunit FTA2	97.74
COG2112	201	Predicted Ser/Thr protein kinase [Signal transduct	97.67
PF10707	199	YrbL-PhoP_reg: PhoP regulatory network protein Yrb	97.59
PF01636	239	APH: Phosphotransferase enzyme family This family	97.58
KOG1035|consensus	1351		97.55
PLN02876	822	acyl-CoA dehydrogenase	97.46
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	97.37
PF12260	188	PIP49_C: Protein-kinase domain of FAM69; InterPro:	97.19
KOG0696|consensus	683		97.04
KOG1826|consensus	2724		96.77
PRK10593	297	hypothetical protein; Provisional	96.76
PRK09550	401	mtnK methylthioribose kinase; Reviewed	96.7
cd05157	235	ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes.	96.67
cd05155	235	APH_ChoK_like_1 Uncharacterized bacterial proteins	96.65
TIGR02721	256	ycfN_thiK thiamine kinase. Members of this family	96.46
TIGR00938	307	thrB_alt homoserine kinase, Neisseria type. Homose	96.4
cd05153	296	HomoserineK_II Homoserine Kinase, type II. Homoser	96.36
KOG0695|consensus	593		96.32
TIGR01767	370	MTRK 5-methylthioribose kinase. This enzyme is inv	96.29
KOG0605|consensus	550		96.23
PRK05231	319	homoserine kinase; Provisional	96.22
KOG0610|consensus	459		96.19
KOG2268|consensus	465		95.95
PRK12396	409	5-methylribose kinase; Reviewed	95.77
KOG0616|consensus	355		95.32
KOG0986|consensus	591		95.25
cd05156	302	ChoK_euk Choline Kinase (ChoK) in eukaryotes. The	95.23
KOG1236|consensus	565		95.2
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	95.1
KOG1093|consensus	725		94.36
PLN02756	418	S-methyl-5-thioribose kinase	94.21
COG5072	488	ALK1 Serine/threonine kinase of the haspin family	94.21
KOG2270|consensus	520		94.17
KOG0614|consensus	732		94.07
PLN02421	330	phosphotransferase, alcohol group as acceptor/kina	93.93
KOG0612|consensus	1317		93.44
COG3173	321	Predicted aminoglycoside phosphotransferase [Gener	92.65

>KOG4158|consensus

Probab=100.00  E-value=3.6e-66  Score=519.59  Aligned_cols=522  Identities=37%  Similarity=0.552  Sum_probs=436.5

Q ss_pred             CchhhhhHhhhhcchhhhhhhccC---CCCCccc-----cc-------cCCCCCCCCCCCCCCC-CCCchhhHHhHHHHH
Q psy4039           1 MSLRTLLFRFYHNGKLLVRYIKPL---QPGHKIE-----FL-------TQPPATSSGQGRLSAP-AGHPIQTYFQNARKL   64 (588)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-----~~-------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   64 (588)
                      ||+|.++.|.||+||.||-.....   +||++.-     .+       -..|+.+|.|++++.| ....+++++||.++|
T Consensus         1 Msvr~~~~r~~~~gr~ll~~~~~kp~~~rglprp~pAa~~lr~~vPr~v~~p~~~Pr~~~l~~p~~~tr~~rv~q~~~~l   80 (598)
T KOG4158|consen    1 MSVRRFGKRAYRIGRELLAKGGRKPIFQRGLPRPFPAAYNLRVHVPRVVLKPAPFPRQNALRIPRLVTRHGRVFQPFSSL   80 (598)
T ss_pred             CcHHHHHHHHHHHHHHHHHhcCCCchhhccCCCCccccccccccccceecCCCCCccccccCCCccchhhhhhhccHHHH
Confidence            999999999999999998777322   6665531     11       1267778999998888 336788999999999


Q ss_pred             HHHhhhhhhcCCchhHHHhHHHHHHhhhcCCCCcccccccccccCcccccccccccccchhhHHhhhhhhccCCCCceee
Q psy4039          65 FVNSLLNRVTNSMASDLRRKTIQQLLYKDNSKPFLAFVGVSLASGTGILTNRVTNSMASDLRRKTLQQLLYKDNSKPFLA  144 (588)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  144 (588)
                      +.++-..|+++.-.++.+-..--+|.                                                     .
T Consensus        81 ~i~~~r~~v~~~w~~~~~~rat~~l~-----------------------------------------------------f  107 (598)
T KOG4158|consen   81 IIERHRFQVQNDWRRKFQPRATIRLE-----------------------------------------------------F  107 (598)
T ss_pred             HHHHHHHHHHHHHhhhcCccceeeec-----------------------------------------------------c
Confidence            99999999976533322221111111                                                     1


Q ss_pred             eeeeeeccccccCCCcchhhhhhHHHHHHHhHhhhhhcccccC-CCccccccCCeEEeeeecccCceeEEEEEEC-----
Q psy4039         145 FVGVSLASGTGILTKEDEFEGVCWEIRHAVNNMFDKLVQVETL-PDVDDVKVDDIQIGKFIAKGTNAVVYEATFR-----  218 (588)
Q Consensus       145 ~v~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-----  218 (588)
                      -+++.++.+.+.+..  +++++|||++......+... .+++. .....+.+++|++++.||+|+.+.||.|+..     
T Consensus       108 g~gv~Lve~~~~~s~--~l~gvCwEir~~~~~ks~~w-hDei~~r~dskFtiddyeiG~~igkGC~AaVY~A~~~~dg~~  184 (598)
T KOG4158|consen  108 GRGVDLVERIRQISG--NLSGVCWEIRYNEDLKSTEW-HDEIPNRIDSKFTIDDYEIGEFIGKGCNAAVYSARLANDGSD  184 (598)
T ss_pred             ccCccHHHHHHHHhc--chhhHHHHHHHHHhhhccCC-CCcCcchhhcccchhhhcccchhhccchhhhhhhhcCCCccc
Confidence            133444444444433  38899999999887665444 44544 5567899999999999999999999998876     


Q ss_pred             --------------------------------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHH------
Q psy4039         219 --------------------------------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDM------  260 (588)
Q Consensus       219 --------------------------------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~------  260 (588)
                                                      ..+.|||+|++.+..+++..+++.|.+|.++.......-|..      
T Consensus       185 le~~~~t~~~pgf~p~ts~p~e~~q~~~p~~~aFPLAiKmMfN~~~~s~~~~iL~sM~~ElvPa~~~a~~~e~~~~t~R~  264 (598)
T KOG4158|consen  185 LESSGNTHYGPGFNPVTSIPAEIPQVSKPAQKAFPLAIKMMFNFEHDSGDAHILKSMGNELVPAPNAAKLLEGQMGTFRP  264 (598)
T ss_pred             ccccCCCCcCCCcCCCcCCcccCCcccCccccccchHHHHhcccccCCchHHHHHHhhhhccCcchhhhhcccccceeee
Confidence                                            347899999999999999999999999999988766654431      


Q ss_pred             HHhhhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHH
Q psy4039         261 LMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMH  340 (588)
Q Consensus       261 il~~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~  340 (588)
                      .-+....+.+|||||+++++|.+..+.+++....||+++|.|++|+ |++++.++|+||..|..+|.+|+-.+  ..+..
T Consensus       265 l~nqtvhLa~HPNIvri~~aF~dsv~~lPda~~~YPdalp~R~~p~-g~g~~~tlylvMkrY~~tLr~yl~~~--~~s~r  341 (598)
T KOG4158|consen  265 LPNQTVHLAKHPNIVRIQTAFIDSVKVLPDAIERYPDALPARWYPS-GAGEPKTLYLVMKRYRQTLREYLWTR--HRSYR  341 (598)
T ss_pred             CCCCCcccCCCCCEEeehhhhhhhhccCCchhhhCcccccceeccc-ccCCCceEEEehhcchhhHHHHHhcC--CCchH
Confidence            1112224468999999999999999999999999999999999999 78999999999999999999999887  78999


Q ss_pred             HHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCC-CCccccccccccccCCccccch
Q psy4039         341 ERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKS-GLSMQYSSADIELGGNVALMAP  419 (588)
Q Consensus       341 ~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~-~~~~~~~~~~~~~~GT~~Y~AP  419 (588)
                      ....++.|+++|+.|||.+||.|||+|++|||+.-+ ++.++.++|+|||+|...+. +...++.+...+.+|+-..|||
T Consensus       342 ~~~~~laQlLEav~hL~~hgvAhRDlKSDNiL~Eld-dD~~P~LVvaDFGCcLAd~~hGlqlpy~S~~Vd~GGNa~lmAP  420 (598)
T KOG4158|consen  342 TGRVILAQLLEAVTHLHKHGVAHRDLKSDNILLELD-DDEIPQLVVADFGCCLADDNHGLQLPYESDEVDLGGNAKLMAP  420 (598)
T ss_pred             HHHHHHHHHHHHHHHHHHccchhhcccccceEEEec-CCCCcEEEEcccceeeeccccccccccccccccCCCcceecch
Confidence            999999999999999999999999999999999887 44558999999999988665 6778899988999999999999


Q ss_pred             hHHhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCccc----cccccccccccCCCCCCccHHHHHHHHHhhhhCCCC
Q psy4039         420 EVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQS----ARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSD  495 (588)
Q Consensus       420 E~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~----~~~~~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~  495 (588)
                      |+...-++.+.+.+|.|+|.|+.|.+.||+++...||++.    .....|.+...|.+++.+|+.+++||..+|++||++
T Consensus       421 Ei~ta~PGp~avvny~kAD~WA~GalaYEIfg~~NPFY~rGem~L~~r~Yqe~qLPalp~~vpp~~rqlV~~lL~r~psk  500 (598)
T KOG4158|consen  421 EIATAVPGPNAVVNYEKADTWAAGALAYEIFGRSNPFYKRGEMLLDTRTYQESQLPALPSRVPPVARQLVFDLLKRDPSK  500 (598)
T ss_pred             hhhhcCCCCceeeccchhhhhhhhhhHHHHhccCCcccccchheechhhhhhhhCCCCcccCChHHHHHHHHHhcCCccc
Confidence            9999999999999999999999999999999999999982    444557888999999999999999999999999999


Q ss_pred             CCCHHHHHHHHhhhhhcCCcccc-CCCCChhHHHHHHHhhhccccccCccccC---------CcccCHHHHHHHHHhhhH
Q psy4039         496 RPSAELAATVCQLYLWAPKHWLY-GATPSHNEIMQWLLTLTTKVLCTGVSYGG---------HVRRTFVEYQLISTFLKR  565 (588)
Q Consensus       496 Rps~~e~l~~L~~~~~~~h~w~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---------~~~~~~~e~~~~~~fl~~  565 (588)
                      |+++.-+.+++++.+|.+|.|++ ...+...++++||.+.+++++|++++...         .......++.++.+++++
T Consensus       501 Rvsp~iAANvl~LsLw~~~~~vka~~~~~~~~~~~wLL~~sskvl~~~r~~~~~~~m~~~~~~~~~a~~~~~Lic~~l~q  580 (598)
T KOG4158|consen  501 RVSPNIAANVLNLSLWRMGEDVKAMMEKCGISQMTWLLAGSSKVLSQKRNSRLDKVMNLITAETIMANLAPHLICRALRQ  580 (598)
T ss_pred             cCCccHHHhHHHHHHhcCchHHHHhcccccHHHHHHHHHhhHHHHhccccchhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999 67788899999999999999999997522         223445667799999999


Q ss_pred             HhHHHHHHHHHHHHHhc
Q psy4039         566 AEFRLITNALQYIQRVL  582 (588)
Q Consensus       566 ~~~~~i~~a~~~~~~~~  582 (588)
                      +.+..+..+..|++...
T Consensus       581 arl~~~s~~~~Wr~~~~  597 (598)
T KOG4158|consen  581 ARLTFLSRMDIWRSLQY  597 (598)
T ss_pred             HHHHHhhhhHHHHHhhc
Confidence            99999999999998754

>KOG0615|consensus

Probab=100.00  E-value=1.5e-52  Score=424.20  Aligned_cols=263  Identities=27%  Similarity=0.330  Sum_probs=216.8

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      +.|.+.+.||+|+||.|-+|..+  |+.||||++.+......+.          .......+.+|++||++|    +|||
T Consensus       172 d~yii~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~----------~~~~~~~v~~EieILkkL----~HP~  237 (475)
T KOG0615|consen  172 DYYIISKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSR----------AIAKTRDVQNEIEILKKL----SHPN  237 (475)
T ss_pred             ceeEeeeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccc----------cccchhhhHHHHHHHHhc----CCCC
Confidence            77899999999999999999987  8999999996533222111          011233457899999998    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      ||+++++|+..+                            +.|+||||+ +|+|.+++-.++ .+.+.....+++||+.|
T Consensus       238 IV~~~d~f~~~d----------------------------s~YmVlE~v~GGeLfd~vv~nk-~l~ed~~K~~f~Qll~a  288 (475)
T KOG0615|consen  238 IVRIKDFFEVPD----------------------------SSYMVLEYVEGGELFDKVVANK-YLREDLGKLLFKQLLTA  288 (475)
T ss_pred             EEEEeeeeecCC----------------------------ceEEEEEEecCccHHHHHHhcc-ccccchhHHHHHHHHHH
Confidence            999999998753                            489999999 689999998765 78999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      +.|||++||+||||||+|||+..+.++  ..+||+|||+|+..+.+..+      .+.||||.|.|||++.......   
T Consensus       289 vkYLH~~GI~HRDiKPeNILl~~~~e~--~llKItDFGlAK~~g~~sfm------~TlCGTpsYvAPEVl~~kg~~~---  357 (475)
T KOG0615|consen  289 VKYLHSQGIIHRDIKPENILLSNDAED--CLLKITDFGLAKVSGEGSFM------KTLCGTPSYVAPEVLASKGVEY---  357 (475)
T ss_pred             HHHHHHcCcccccCCcceEEeccCCcc--eEEEecccchhhccccceeh------hhhcCCccccChhheecCCeec---
Confidence            999999999999999999999876332  68999999999987654333      3789999999999998765331   


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcccccccc-------ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHH
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD-------YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATV  505 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~-------~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~  505 (588)
                      +..|+|+||+||++|-+++|.+||.+......       -.....|..|..+++++++||.+||..||++|||++++++ 
T Consensus       358 ~~~kVDiWSlGcvLfvcLsG~pPFS~~~~~~sl~eQI~~G~y~f~p~~w~~Iseea~dlI~~mL~VdP~~R~s~~eaL~-  436 (475)
T KOG0615|consen  358 YPSKVDIWSLGCVLFVCLSGYPPFSEEYTDPSLKEQILKGRYAFGPLQWDRISEEALDLINWMLVVDPENRPSADEALN-  436 (475)
T ss_pred             ccchheeeeccceEEEEeccCCCcccccCCccHHHHHhcCcccccChhhhhhhHHHHHHHHHhhEeCcccCcCHHHHhc-
Confidence            23589999999999999999999987543331       1123345667889999999999999999999999999999 


Q ss_pred             HhhhhhcCCccccCCC
Q psy4039         506 CQLYLWAPKHWLYGAT  521 (588)
Q Consensus       506 L~~~~~~~h~w~~~~~  521 (588)
                              |||++...
T Consensus       437 --------hpW~~~~~  444 (475)
T KOG0615|consen  437 --------HPWFKDAP  444 (475)
T ss_pred             --------Chhhhccc
Confidence                    99998443

>KOG0581|consensus

Probab=100.00  E-value=1.9e-50  Score=406.38  Aligned_cols=270  Identities=22%  Similarity=0.303  Sum_probs=226.9

Q ss_pred             ccccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcC
Q psy4039         190 VDDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVEN  267 (588)
Q Consensus       190 ~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~  267 (588)
                      ...+..++++..+.||+|..|+||++.++  ++.+|+|.+..                +..+..++++.+|++|++.+  
T Consensus        73 ~~~i~~~dle~~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~----------------~~~~~~~~Qi~rEl~il~~~--  134 (364)
T KOG0581|consen   73 DNGISLSDLERLGVLGSGNGGTVYKVRHKPTGKIYALKVILL----------------NIDPALQKQILRELEILRSC--  134 (364)
T ss_pred             ccccCHHHhhhhhhcccCCCcEEEEEEEcCCCeEEEEEeecc----------------cCCHHHHHHHHHHHHHHhhC--
Confidence            34567788999999999999999999998  89999999932                11122456677899999998  


Q ss_pred             CCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHH
Q psy4039         268 LPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLF  346 (588)
Q Consensus       268 l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~  346 (588)
                        +|||||++||+|.+..                          . .+.++|||| +|||++++...+ .++|.....|+
T Consensus       135 --~spyIV~~ygaF~~~~--------------------------~-~isI~mEYMDgGSLd~~~k~~g-~i~E~~L~~ia  184 (364)
T KOG0581|consen  135 --QSPYIVGFYGAFYSNG--------------------------E-EISICMEYMDGGSLDDILKRVG-RIPEPVLGKIA  184 (364)
T ss_pred             --CCCCeeeEeEEEEeCC--------------------------c-eEEeehhhcCCCCHHHHHhhcC-CCCHHHHHHHH
Confidence              9999999999998731                          0 499999999 589999998764 89999999999


Q ss_pred             HHHHHHHHHHHh-CCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcC
Q psy4039         347 TQLLEGVTHLNM-HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALAT  425 (588)
Q Consensus       347 ~ql~~gL~yLH~-~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~  425 (588)
                      .+|++||.|||+ ++||||||||+|||++..     +.+||||||.++.+.+.       ...+++||..|||||.+.+.
T Consensus       185 ~~VL~GL~YLh~~~~IIHRDIKPsNlLvNsk-----GeVKicDFGVS~~lvnS-------~a~tfvGT~~YMsPERi~g~  252 (364)
T KOG0581|consen  185 RAVLRGLSYLHEERKIIHRDIKPSNLLVNSK-----GEVKICDFGVSGILVNS-------IANTFVGTSAYMSPERISGE  252 (364)
T ss_pred             HHHHHHHHHHhhccCeeeccCCHHHeeeccC-----CCEEeccccccHHhhhh-------hcccccccccccChhhhcCC
Confidence            999999999995 999999999999999988     89999999999876543       22368899999999999988


Q ss_pred             CCCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccc--------ccccccccCCCCCC-ccHHHHHHHHHhhhhCCCCC
Q psy4039         426 PGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARN--------TDYEVNALPQLNTN-VPEVMRRLVAKLLENDPSDR  496 (588)
Q Consensus       426 ~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~--------~~~~~~~~~~~~~~-~~~~l~~Li~~~L~~dP~~R  496 (588)
                      .      |+.++||||||+.++|+.+|+.||......        ..+.....|.+|.. +|++++++|..||++||.+|
T Consensus       253 ~------Ys~~sDIWSLGLsllE~a~GrfP~~~~~~~~~~~~~Ll~~Iv~~ppP~lP~~~fS~ef~~FV~~CL~Kdp~~R  326 (364)
T KOG0581|consen  253 S------YSVKSDIWSLGLSLLELAIGRFPYPPPNPPYLDIFELLCAIVDEPPPRLPEGEFSPEFRSFVSCCLRKDPSER  326 (364)
T ss_pred             c------CCcccceecccHHHHHHhhCCCCCCCcCCCCCCHHHHHHHHhcCCCCCCCcccCCHHHHHHHHHHhcCCcccC
Confidence            6      556799999999999999999999774110        11223456777876 99999999999999999999


Q ss_pred             CCHHHHHHHHhhhhhcCCccccCCCCChhHHHHHHHhh
Q psy4039         497 PSAELAATVCQLYLWAPKHWLYGATPSHNEIMQWLLTL  534 (588)
Q Consensus       497 ps~~e~l~~L~~~~~~~h~w~~~~~~~~~~~~~~l~~~  534 (588)
                      ||+.|+++         |||++.......++..|+...
T Consensus       327 ~s~~qLl~---------Hpfi~~~~~~~vd~~~~~~~~  355 (364)
T KOG0581|consen  327 PSAKQLLQ---------HPFIKKFEDPNVDMASFVRKA  355 (364)
T ss_pred             CCHHHHhc---------CHHHhhcccccccHHHHHHHh
Confidence            99999999         999997766666676676643

>KOG0575|consensus

Probab=100.00  E-value=6e-50  Score=423.69  Aligned_cols=251  Identities=27%  Similarity=0.379  Sum_probs=214.2

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ..|..++.||+|||+.||++++.  |..||+|++.+....           +   ...++.+.+||+|.+.|    +|||
T Consensus        18 ~~Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~-----------k---~~~reKv~~EIeIHr~L----~Hpn   79 (592)
T KOG0575|consen   18 KRYKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLK-----------K---PKQREKVLNEIEIHRSL----KHPN   79 (592)
T ss_pred             ceeeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhc-----------C---cchHHHHHHHHHHHHhc----CCCc
Confidence            56999999999999999999994  899999999653222           1   12455677899999998    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      ||+++++|+|..                            ++|+|+|+| +++|..+++.+ ..++|.+++.+++||+.|
T Consensus        80 IV~f~~~FEDs~----------------------------nVYivLELC~~~sL~el~Krr-k~ltEpEary~l~QIv~G  130 (592)
T KOG0575|consen   80 IVQFYHFFEDSN----------------------------NVYIVLELCHRGSLMELLKRR-KPLTEPEARYFLRQIVEG  130 (592)
T ss_pred             EEeeeeEeecCC----------------------------ceEEEEEecCCccHHHHHHhc-CCCCcHHHHHHHHHHHHH
Confidence            999999999853                            599999999 69999999844 499999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||+++|+|||||..|+|++++     .++||+|||+|.........     ..+.||||.|+|||++.....     
T Consensus       131 lkYLH~~~IiHRDLKLGNlfL~~~-----~~VKIgDFGLAt~le~~~Er-----k~TlCGTPNYIAPEVl~k~gH-----  195 (592)
T KOG0575|consen  131 LKYLHSLGIIHRDLKLGNLFLNEN-----MNVKIGDFGLATQLEYDGER-----KKTLCGTPNYIAPEVLNKSGH-----  195 (592)
T ss_pred             HHHHHhcCceecccchhheeecCc-----CcEEecccceeeeecCcccc-----cceecCCCcccChhHhccCCC-----
Confidence            999999999999999999999998     89999999999887643221     126899999999999987664     


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCccccccccccc--cccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhh
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV--NALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYL  510 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~--~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~  510 (588)
                       +..+||||+||+||.||+|++||........+..  .....+|..++.++++||.++|++||.+|||+++++.      
T Consensus       196 -sfEvDiWSlGcvmYtLL~G~PPFetk~vkety~~Ik~~~Y~~P~~ls~~A~dLI~~lL~~~P~~Rpsl~~vL~------  268 (592)
T KOG0575|consen  196 -SFEVDIWSLGCVMYTLLVGRPPFETKTVKETYNKIKLNEYSMPSHLSAEAKDLIRKLLRPNPSERPSLDEVLD------  268 (592)
T ss_pred             -CCchhhhhhhhHHHhhhhCCCCcccchHHHHHHHHHhcCcccccccCHHHHHHHHHHhcCCcccCCCHHHHhc------
Confidence             3569999999999999999999988644444332  1223466789999999999999999999999999999      


Q ss_pred             hcCCcccc
Q psy4039         511 WAPKHWLY  518 (588)
Q Consensus       511 ~~~h~w~~  518 (588)
                         |+|++
T Consensus       269 ---h~Ff~  273 (592)
T KOG0575|consen  269 ---HPFFK  273 (592)
T ss_pred             ---CHhhh
Confidence               99995

>KOG0603|consensus

Probab=100.00  E-value=3.8e-50  Score=427.52  Aligned_cols=333  Identities=20%  Similarity=0.263  Sum_probs=270.0

Q ss_pred             HHHHHHHHhhhhhhcCC--chhHHHhHHH------HHHhhhcCCCCcccccccccccCcccccccccccccchhh----H
Q psy4039          60 NARKLFVNSLLNRVTNS--MASDLRRKTI------QQLLYKDNSKPFLAFVGVSLASGTGILTNRVTNSMASDLR----R  127 (588)
Q Consensus        60 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~------~~l~~~~~~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~  127 (588)
                      -++.+|++||.|||+.|  ++.|||+|.|      ++|.+|++.||||++++-..  ++..||.+||..+|.+++    +
T Consensus       217 ~~~~l~~r~p~nrLg~~~~~~~eik~h~f~~~i~~~~l~~r~~~~~fkp~~~~e~--~~~~fd~eft~~~P~dsp~~~~~  294 (612)
T KOG0603|consen  217 LFRQLFKRNPENRLGAGPDGVDEIKQHEFFQSIDWNELEARSRPPPFKPGSITER--DVAQFDPEFTSQVPADSPLLSAS  294 (612)
T ss_pred             HHHHHHhhCHHHHhccCcchhHHHhccchheeeeHhhHhhcCCCCCCCCcccchh--hhhhcCchhccCCcccCCCCCCC
Confidence            36799999999999998  9999999999      89999999999999998887  788899999999999876    6


Q ss_pred             HhhhhhhccCCCCceeeeeeeeeccccccCCCcchhhhhhHHHHHHHhHhhhhhcccccCCCccccccCCeEEeeeeccc
Q psy4039         128 KTLQQLLYKDNSKPFLAFVGVSLASGTGILTKEDEFEGVCWEIRHAVNNMFDKLVQVETLPDVDDVKVDDIQIGKFIAKG  207 (588)
Q Consensus       128 ~~~~~~~~~~~s~~~~~~v~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~IG~G  207 (588)
                      .+.|++|+|      +.+++..      ++..              .          .+.    . ..++|.+...+|.|
T Consensus       295 ~s~~~if~g------~sfva~~------il~~--------------~----------~~~----~-~~~~y~~~~~~~~g  333 (612)
T KOG0603|consen  295 GSDHTIFSG------PSFVAPG------VLED--------------A----------VTA----P-FTESYEFREELGEG  333 (612)
T ss_pred             ccccchhcC------CCccChH------Hhhc--------------c----------ccC----C-cchhhccccccCCC
Confidence            777888888      6665544      2211              0          000    0 12778888889999


Q ss_pred             CceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEEeeeeeccC
Q psy4039         208 TNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFV  285 (588)
Q Consensus       208 ~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l~~~~~~~~  285 (588)
                      +|++|-.|.+.  ++..|||++.+.                     ..+..+|+.++...   .+||||++++++|.+. 
T Consensus       334 s~s~~~~~~~~~t~~~~~vkii~~~---------------------~~~~~~e~~~~~~~---~~h~niv~~~~v~~~~-  388 (612)
T KOG0603|consen  334 SFSAVKYCESSPTDQEPAVKIISKR---------------------ADDNQDEIPISLLV---RDHPNIVKSHDVYEDG-  388 (612)
T ss_pred             Cccceeeeeccccccchhheecccc---------------------ccccccccchhhhh---cCCCcceeecceecCC-
Confidence            99999999987  789999999432                     22334567666655   5899999999998773 


Q ss_pred             CCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCC-CcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCceec
Q psy4039         286 PSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYN-TDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHR  364 (588)
Q Consensus       286 ~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~-gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yLH~~~IvHr  364 (588)
                                                 .+.|+|||.++ +-|.+.+...  +....++..|+++|+.|+.|||++|||||
T Consensus       389 ---------------------------~~~~~v~e~l~g~ell~ri~~~--~~~~~e~~~w~~~lv~Av~~LH~~gvvhR  439 (612)
T KOG0603|consen  389 ---------------------------KEIYLVMELLDGGELLRRIRSK--PEFCSEASQWAAELVSAVDYLHEQGVVHR  439 (612)
T ss_pred             ---------------------------ceeeeeehhccccHHHHHHHhc--chhHHHHHHHHHHHHHHHHHHHhcCeeec
Confidence                                       25999999994 4555555444  23337888999999999999999999999


Q ss_pred             cCCCCcEEEc-CCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCCcCchhhHH
Q psy4039         365 DLKSDNILLD-CSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAG  443 (588)
Q Consensus       365 DLKp~NILld-~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~G  443 (588)
                      ||||+|||++ +.     ++++|+|||.++......        .+.+=|..|.|||++....      ++++|||||||
T Consensus       440 DLkp~NIL~~~~~-----g~lrltyFG~a~~~~~~~--------~tp~~t~~y~APEvl~~~~------yt~acD~WSLG  500 (612)
T KOG0603|consen  440 DLKPGNILLDGSA-----GHLRLTYFGFWSELERSC--------DTPALTLQYVAPEVLAIQE------YTEACDWWSLG  500 (612)
T ss_pred             CCChhheeecCCC-----CcEEEEEechhhhCchhh--------cccchhhcccChhhhccCC------CCcchhhHHHH
Confidence            9999999996 44     799999999998765541        1345688999999998655      56889999999


Q ss_pred             HHHHHHhcCCCCCcccccc-ccccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccc
Q psy4039         444 TVAYEIFGHDNPFYQSARN-TDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWL  517 (588)
Q Consensus       444 vil~ElltG~~Pf~~~~~~-~~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~  517 (588)
                      ++||+|++|+.||...... ........+.+...+|+++++||+.||+.||.+||+++++..         |||+
T Consensus       501 vlLy~ML~G~tp~~~~P~~~ei~~~i~~~~~s~~vS~~AKdLl~~LL~~dP~~Rl~~~~i~~---------h~w~  566 (612)
T KOG0603|consen  501 VLLYEMLTGRTLFAAHPAGIEIHTRIQMPKFSECVSDEAKDLLQQLLQVDPALRLGADEIGA---------HPWF  566 (612)
T ss_pred             HHHHHHHhCCCccccCCchHHHHHhhcCCccccccCHHHHHHHHHhccCChhhCcChhhhcc---------Ccch
Confidence            9999999999999875444 233334555666899999999999999999999999999999         9999

>KOG0595|consensus

Probab=100.00  E-value=4.8e-48  Score=392.05  Aligned_cols=250  Identities=29%  Similarity=0.438  Sum_probs=206.8

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      .++|.+.+.||.|+||+||+|+++  +..||||.|.+....               ....+....||+||+.+    +||
T Consensus         9 ~~~y~~~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~---------------~k~~e~L~~Ei~iLkel----~H~   69 (429)
T KOG0595|consen    9 VGDYELSREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLN---------------KKLVELLLSEIKILKEL----KHP   69 (429)
T ss_pred             cccceehhhccCcceEEEEEeEeccCCceEEeeeehhhccC---------------HHHHHHHHHHHHHHHhc----CCc
Confidence            388999999999999999999998  889999999542211               11334456799999998    899


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLE  351 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~  351 (588)
                      |||.+++++.+..                            .+|+||||| +|+|.+||+.++ .+++..+..++.||+.
T Consensus        70 nIV~l~d~~~~~~----------------------------~i~lVMEyC~gGDLs~yi~~~~-~l~e~t~r~Fm~QLA~  120 (429)
T KOG0595|consen   70 NIVRLLDCIEDDD----------------------------FIYLVMEYCNGGDLSDYIRRRG-RLPEATARHFMQQLAS  120 (429)
T ss_pred             ceeeEEEEEecCC----------------------------eEEEEEEeCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            9999999998742                            599999999 589999999876 8999999999999999


Q ss_pred             HHHHHHhCCceeccCCCCcEEEcCCC-CCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCcc
Q psy4039         352 GVTHLNMHRTAHRDLKSDNILLDCSE-DNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFS  430 (588)
Q Consensus       352 gL~yLH~~~IvHrDLKp~NILld~~~-~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~  430 (588)
                      ||++||+++||||||||.||||+... ......+||+|||+||....+...      .+.||+|.|||||++..+.    
T Consensus       121 alq~L~~~~IiHRDLKPQNiLLs~~~~~~~~~~LKIADFGfAR~L~~~~~a------~tlcGSplYMAPEV~~~~~----  190 (429)
T KOG0595|consen  121 ALQFLHENNIIHRDLKPQNILLSTTARNDTSPVLKIADFGFARFLQPGSMA------ETLCGSPLYMAPEVIMSQQ----  190 (429)
T ss_pred             HHHHHHHCCeeeccCCcceEEeccCCCCCCCceEEecccchhhhCCchhHH------HHhhCCccccCHHHHHhcc----
Confidence            99999999999999999999998762 222257999999999998764332      2689999999999997654    


Q ss_pred             CCCCCcCchhhHHHHHHHHhcCCCCCccccccccc-----cccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHH
Q psy4039         431 FVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY-----EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAAT  504 (588)
Q Consensus       431 ~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~-----~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~  504 (588)
                        |+.|+|+||+|+|+|+|++|++||.........     .....+.++..++....+|+...|..+|.+|.+..+...
T Consensus       191 --YdAKADLWSiG~Ilyq~l~g~~Pf~a~t~~eL~~~~~k~~~~~~~~~~~~s~~~~~Ll~~ll~~~~~~~~~~~~~~~  267 (429)
T KOG0595|consen  191 --YDAKADLWSIGTILYQCLTGKPPFDAETPKELLLYIKKGNEIVPVLPAELSNPLRELLISLLQRNPKDRISFEDFFD  267 (429)
T ss_pred             --ccchhhHHHHHHHHHHHHhCCCCccccCHHHHHHHHhccccccCchhhhccCchhhhhhHHHhcCccccCchHHhhh
Confidence              668999999999999999999999864322111     123344455667777889999999999999999988766

>KOG0192|consensus

Probab=100.00  E-value=2.6e-47  Score=399.71  Aligned_cols=263  Identities=26%  Similarity=0.360  Sum_probs=219.8

Q ss_pred             CCccccccCCeEEeeeecccCceeEEEEEECCee-EEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhc
Q psy4039         188 PDVDDVKVDDIQIGKFIAKGTNAVVYEATFRGVE-YALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVE  266 (588)
Q Consensus       188 ~~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~g~~-vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~  266 (588)
                      ...+.++.+++.+.+.||+|+||+||+|.++|.. ||||++...+....               ..+.|.+|+.+|.++ 
T Consensus        33 ~~~~~i~~~~l~~~~~iG~G~~g~V~~~~~~g~~~vavK~~~~~~~~~~---------------~~~~f~~E~~il~~l-   96 (362)
T KOG0192|consen   33 LPEEEIDPDELPIEEVLGSGSFGTVYKGKWRGTDVVAVKIISDPDFDDE---------------SRKAFRREASLLSRL-   96 (362)
T ss_pred             ccceecChHHhhhhhhcccCCceeEEEEEeCCceeEEEEEecchhcChH---------------HHHHHHHHHHHHHhC-
Confidence            3556777788888889999999999999999998 99999954322111               145678899999997 


Q ss_pred             CCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHH-hcCCCCHHHHHH
Q psy4039         267 NLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRE-RCAQLSMHERVL  344 (588)
Q Consensus       267 ~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~-~~~~l~~~~~~~  344 (588)
                         +|||||+++|+|.+..                      +     .+.+||||+ +|+|.+++.. +...+++..++.
T Consensus        97 ---~HpNIV~f~G~~~~~~----------------------~-----~~~iVtEy~~~GsL~~~l~~~~~~~l~~~~~l~  146 (362)
T KOG0192|consen   97 ---RHPNIVQFYGACTSPP----------------------G-----SLCIVTEYMPGGSLSVLLHKKRKRKLPLKVRLR  146 (362)
T ss_pred             ---CCCCeeeEEEEEcCCC----------------------C-----ceEEEEEeCCCCcHHHHHhhcccCCCCHHHHHH
Confidence               9999999999998732                      0     389999999 7999999988 355899999999


Q ss_pred             HHHHHHHHHHHHHhCC-ceeccCCCCcEEEcCCCCCCCC-ceeeeccccccccCCCCccccccccccccCCccccchhHH
Q psy4039         345 LFTQLLEGVTHLNMHR-TAHRDLKSDNILLDCSEDNTCP-QLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVA  422 (588)
Q Consensus       345 i~~ql~~gL~yLH~~~-IvHrDLKp~NILld~~~~~~~~-~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l  422 (588)
                      ++.||++||.|||+++ ||||||||+|||++.+     + ++||+|||+++......     ...+...||+.|||||++
T Consensus       147 ~aldiArGm~YLH~~~~iIHrDLK~~NiLv~~~-----~~~~KI~DFGlsr~~~~~~-----~~~~~~~GT~~wMAPEv~  216 (362)
T KOG0192|consen  147 IALDIARGMEYLHSEGPIIHRDLKSDNILVDLK-----GKTLKIADFGLSREKVISK-----TSMTSVAGTYRWMAPEVL  216 (362)
T ss_pred             HHHHHHHHHHHHhcCCCeeecccChhhEEEcCC-----CCEEEECCCccceeecccc-----ccccCCCCCccccChhhh
Confidence            9999999999999999 9999999999999988     5 99999999998765421     111136799999999999


Q ss_pred             hcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccc----cccccccccCCCCCCccHHHHHHHHHhhhhCCCCCCC
Q psy4039         423 LATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSAR----NTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS  498 (588)
Q Consensus       423 ~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~----~~~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps  498 (588)
                      .+.    ...++.|+||||||+++|||+||+.||.+...    ........+|.++..+++.+..||.+||+.||.+||+
T Consensus       217 ~~~----~~~~~~K~DvySFgIvlWEl~t~~~Pf~~~~~~~~~~~v~~~~~Rp~~p~~~~~~l~~l~~~CW~~dp~~RP~  292 (362)
T KOG0192|consen  217 RGE----KSPYTEKSDVYSFGIVLWELLTGEIPFEDLAPVQVASAVVVGGLRPPIPKECPPHLSSLMERCWLVDPSRRPS  292 (362)
T ss_pred             cCC----CCcCCccchhhhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcCCCCCCCccCCHHHHHHHHHhCCCCCCcCCC
Confidence            854    11267899999999999999999999987543    2222346677888889999999999999999999999


Q ss_pred             HHHHHHHHhhhh
Q psy4039         499 AELAATVCQLYL  510 (588)
Q Consensus       499 ~~e~l~~L~~~~  510 (588)
                      +.+++..|+.+.
T Consensus       293 f~ei~~~l~~~~  304 (362)
T KOG0192|consen  293 FLEIVSRLESIM  304 (362)
T ss_pred             HHHHHHHHHHHH
Confidence            999999888664

>KOG0598|consensus

Probab=100.00  E-value=1.2e-47  Score=386.25  Aligned_cols=255  Identities=25%  Similarity=0.384  Sum_probs=212.2

Q ss_pred             ccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCC
Q psy4039         192 DVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLP  269 (588)
Q Consensus       192 ~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~  269 (588)
                      ....++|++.++||+|+||+||.++.+  ++.||+|+|++..+...              ........|..||..+    
T Consensus        21 ~~~~~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~--------------~e~~~~~~Er~IL~~v----   82 (357)
T KOG0598|consen   21 MVGPDDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEK--------------KEVRHTKAERNILSKI----   82 (357)
T ss_pred             cCChhheeeeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhh--------------hhHHHHHHHHHHHHhC----
Confidence            566799999999999999999999887  88999999965332211              1233455689999987    


Q ss_pred             CCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHH
Q psy4039         270 PHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQ  348 (588)
Q Consensus       270 ~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~q  348 (588)
                      +||.||+++..|++..                            .+|+|+||+ +|.|...|...+ .+++..+..++..
T Consensus        83 ~hPFiv~l~ysFQt~~----------------------------kLylVld~~~GGeLf~hL~~eg-~F~E~~arfYlaE  133 (357)
T KOG0598|consen   83 KHPFIVKLIYSFQTEE----------------------------KLYLVLDYLNGGELFYHLQREG-RFSEDRARFYLAE  133 (357)
T ss_pred             CCCcEeeeEEecccCC----------------------------eEEEEEeccCCccHHHHHHhcC-CcchhHHHHHHHH
Confidence            9999999999998742                            599999999 679999998765 8999999999999


Q ss_pred             HHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCC
Q psy4039         349 LLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGL  428 (588)
Q Consensus       349 l~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~  428 (588)
                      |+.||.|||++|||||||||+|||||.+     ++++|+|||+|+..-....     .+.++|||+.|||||++.+.+  
T Consensus       134 i~lAL~~LH~~gIiyRDlKPENILLd~~-----GHi~LtDFgL~k~~~~~~~-----~t~tfcGT~eYmAPEil~~~g--  201 (357)
T KOG0598|consen  134 IVLALGYLHSKGIIYRDLKPENILLDEQ-----GHIKLTDFGLCKEDLKDGD-----ATRTFCGTPEYMAPEILLGKG--  201 (357)
T ss_pred             HHHHHHHHHhCCeeeccCCHHHeeecCC-----CcEEEeccccchhcccCCC-----ccccccCCccccChHHHhcCC--
Confidence            9999999999999999999999999999     9999999999986443211     122589999999999999886  


Q ss_pred             ccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccccc---ccccCCCCCCccHHHHHHHHHhhhhCCCCCC----CHHH
Q psy4039         429 FSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE---VNALPQLNTNVPEVMRRLVAKLLENDPSDRP----SAEL  501 (588)
Q Consensus       429 ~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~---~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rp----s~~e  501 (588)
                          ++..+|+||+||++|||++|.+||.+......+.   ....+..+..++.+++++++++|+.||++|.    ++.+
T Consensus       202 ----y~~~vDWWsLGillYeML~G~pPF~~~~~~~~~~~I~~~k~~~~p~~ls~~ardll~~LL~rdp~~RLg~~~d~~~  277 (357)
T KOG0598|consen  202 ----YDKAVDWWSLGILLYEMLTGKPPFYAEDVKKMYDKILKGKLPLPPGYLSEEARDLLKKLLKRDPRQRLGGPGDAEE  277 (357)
T ss_pred             ----CCcccchHhHHHHHHHHhhCCCCCcCccHHHHHHHHhcCcCCCCCccCCHHHHHHHHHHhccCHHHhcCCCCChHH
Confidence                5677999999999999999999999865433332   2233445566899999999999999999996    5666


Q ss_pred             HHHHHhhhhhcCCcccc
Q psy4039         502 AATVCQLYLWAPKHWLY  518 (588)
Q Consensus       502 ~l~~L~~~~~~~h~w~~  518 (588)
                      +.+         |||+.
T Consensus       278 ik~---------HpfF~  285 (357)
T KOG0598|consen  278 IKR---------HPFFK  285 (357)
T ss_pred             hhc---------Ccccc
Confidence            666         88876

>KOG0592|consensus

Probab=100.00  E-value=1.8e-47  Score=398.74  Aligned_cols=261  Identities=26%  Similarity=0.414  Sum_probs=219.7

Q ss_pred             ccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCC
Q psy4039         192 DVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLP  269 (588)
Q Consensus       192 ~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~  269 (588)
                      .....+|.+++.||.|+|++|++|+.+  ++.||||++.+           +...+|.   +.+.+.+|-.+|..|   .
T Consensus        69 kk~~~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K-----------~~Iike~---KvkYV~~Ek~~l~~L---~  131 (604)
T KOG0592|consen   69 KKTPNDFKFGKILGEGSYSTVVLAREKATGKEYAIKVLDK-----------RYIIKEK---KVKYVTREKEALTQL---S  131 (604)
T ss_pred             cCChhhcchhheeccccceeEEEeeecCCCceeeHhhhhH-----------HHHHhhc---ccchhhHHHHHHHHh---h
Confidence            345589999999999999999999998  89999999953           2223332   455667899999887   5


Q ss_pred             CCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHH
Q psy4039         270 PHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQ  348 (588)
Q Consensus       270 ~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~q  348 (588)
                      .||.||+||..|+|+.                            .+|+|+||+ +|+|.++|+.-+ .|++..++.++.+
T Consensus       132 ~hPgivkLy~TFQD~~----------------------------sLYFvLe~A~nGdll~~i~K~G-sfde~caR~YAAe  182 (604)
T KOG0592|consen  132 GHPGIVKLYFTFQDEE----------------------------SLYFVLEYAPNGDLLDLIKKYG-SFDETCARFYAAE  182 (604)
T ss_pred             CCCCeEEEEEEeeccc----------------------------ceEEEEEecCCCcHHHHHHHhC-cchHHHHHHHHHH
Confidence            8999999999999854                            499999999 899999999876 9999999999999


Q ss_pred             HHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCcc------c--cccccccccCCccccchh
Q psy4039         349 LLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSM------Q--YSSADIELGGNVALMAPE  420 (588)
Q Consensus       349 l~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~------~--~~~~~~~~~GT~~Y~APE  420 (588)
                      |+.||+|||++|||||||||+|||||.+     +++||+|||.|+.+......      +  .++....++||..|++||
T Consensus       183 IldAleylH~~GIIHRDlKPENILLd~d-----mhikITDFGsAK~l~~~~~~~~~~~~~~~a~s~~~SFVGTAeYVSPE  257 (604)
T KOG0592|consen  183 ILDALEYLHSNGIIHRDLKPENILLDKD-----GHIKITDFGSAKILSPSQKSQENPVDPNQASSRRSSFVGTAEYVSPE  257 (604)
T ss_pred             HHHHHHHHHhcCceeccCChhheeEcCC-----CcEEEeeccccccCChhhccccCccCcccccCcccceeeeecccCHH
Confidence            9999999999999999999999999999     89999999999987652211      1  111124689999999999


Q ss_pred             HHhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccccc--cccCCCCCCccHHHHHHHHHhhhhCCCCCCC
Q psy4039         421 VALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV--NALPQLNTNVPEVMRRLVAKLLENDPSDRPS  498 (588)
Q Consensus       421 ~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~--~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps  498 (588)
                      ++..+.      .+..+|+|+||||+|.|+.|.+||.+......+..  .....++..+|+.+++||+++|..||.+|+|
T Consensus       258 lL~~~~------~~~~sDiWAlGCilyQmlaG~PPFra~NeyliFqkI~~l~y~fp~~fp~~a~dLv~KLLv~dp~~Rlt  331 (604)
T KOG0592|consen  258 LLNDSP------AGPSSDLWALGCILYQMLAGQPPFRAANEYLIFQKIQALDYEFPEGFPEDARDLIKKLLVRDPSDRLT  331 (604)
T ss_pred             HhcCCC------CCcccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHccCcccccc
Confidence            998776      34679999999999999999999988655444332  2334678899999999999999999999999


Q ss_pred             HHHHHHHHhhhhhcCCcccc
Q psy4039         499 AELAATVCQLYLWAPKHWLY  518 (588)
Q Consensus       499 ~~e~l~~L~~~~~~~h~w~~  518 (588)
                      ++++.+         ||||.
T Consensus       332 ~~qIk~---------HpFF~  342 (604)
T KOG0592|consen  332 SQQIKA---------HPFFE  342 (604)
T ss_pred             HHHHhh---------Ccccc
Confidence            999988         77776

>KOG0616|consensus

Probab=100.00  E-value=1e-45  Score=360.75  Aligned_cols=251  Identities=24%  Similarity=0.347  Sum_probs=215.1

Q ss_pred             cccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCC
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPP  270 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~  270 (588)
                      ..+++|++.+.||.|+||.|..++.+  |..||+|++.+..       +++.       ...+...+|..+|+.+    .
T Consensus        41 ~~l~dfe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~-------vVkl-------KQveH~~nEk~vL~~v----~  102 (355)
T KOG0616|consen   41 YSLQDFERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQK-------VVKL-------KQVEHTHNEKRVLKAV----S  102 (355)
T ss_pred             cchhhhhheeeeccCccceEEEEEEccCCceeehhhcCHHH-------HHHH-------HHHHHHhhHHHHHhhc----c
Confidence            78899999999999999999999998  8899999995321       1110       1223456799999988    8


Q ss_pred             CCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4039         271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQL  349 (588)
Q Consensus       271 HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql  349 (588)
                      ||.+++|++.|.|.                            .++|+||||. +|.|..+|+..+ ++++..++.++.||
T Consensus       103 ~PFlv~l~~t~~d~----------------------------~~lymvmeyv~GGElFS~Lrk~~-rF~e~~arFYAAei  153 (355)
T KOG0616|consen  103 HPFLVKLYGTFKDN----------------------------SNLYMVMEYVPGGELFSYLRKSG-RFSEPHARFYAAEI  153 (355)
T ss_pred             CceeEEEEEeeccC----------------------------CeEEEEEeccCCccHHHHHHhcC-CCCchhHHHHHHHH
Confidence            99999999998874                            2599999999 689999999876 99999999999999


Q ss_pred             HHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCc
Q psy4039         350 LEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF  429 (588)
Q Consensus       350 ~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~  429 (588)
                      +.||+|||+.+|++|||||+|||||.+     +.+||+|||+|+.....        +-+.||||.|+|||++...+   
T Consensus       154 vlAleylH~~~iiYRDLKPENiLlD~~-----G~iKitDFGFAK~v~~r--------T~TlCGTPeYLAPEii~sk~---  217 (355)
T KOG0616|consen  154 VLALEYLHSLDIIYRDLKPENLLLDQN-----GHIKITDFGFAKRVSGR--------TWTLCGTPEYLAPEIIQSKG---  217 (355)
T ss_pred             HHHHHHHHhcCeeeccCChHHeeeccC-----CcEEEEeccceEEecCc--------EEEecCCccccChHHhhcCC---
Confidence            999999999999999999999999998     99999999999886543        12689999999999999887   


Q ss_pred             cCCCCCcCchhhHHHHHHHHhcCCCCCcccccccccccc--ccCCCCCCccHHHHHHHHHhhhhCCCCCC-----CHHHH
Q psy4039         430 SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVN--ALPQLNTNVPEVMRRLVAKLLENDPSDRP-----SAELA  502 (588)
Q Consensus       430 ~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~~--~~~~~~~~~~~~l~~Li~~~L~~dP~~Rp-----s~~e~  502 (588)
                         ++.++|.|||||++|||++|.+||+.+.....++..  ..-.+|..+++++++|+.++|+.|-.+|.     ...++
T Consensus       218 ---ynkavDWWalGVLIYEMlaG~pPF~~~~~~~iY~KI~~~~v~fP~~fs~~~kdLl~~LL~vD~t~R~gnlknG~~dI  294 (355)
T KOG0616|consen  218 ---YNKAVDWWALGVLIYEMLAGYPPFYDDNPIQIYEKILEGKVKFPSYFSSDAKDLLKKLLQVDLTKRFGNLKNGVEDI  294 (355)
T ss_pred             ---CCcchhHHHHHHHHHHHHcCCCCCcCCChHHHHHHHHhCcccCCcccCHHHHHHHHHHHhhhhHhhhcCcCCCcccc
Confidence               557799999999999999999999997666555442  23357888999999999999999999993     45677


Q ss_pred             HHHHhhhhhcCCcccc
Q psy4039         503 ATVCQLYLWAPKHWLY  518 (588)
Q Consensus       503 l~~L~~~~~~~h~w~~  518 (588)
                      .+         |||++
T Consensus       295 k~---------H~wF~  301 (355)
T KOG0616|consen  295 KN---------HPWFK  301 (355)
T ss_pred             cc---------Ccccc
Confidence            77         99997

>KOG0583|consensus

Probab=100.00  E-value=3.8e-45  Score=386.24  Aligned_cols=260  Identities=25%  Similarity=0.361  Sum_probs=211.5

Q ss_pred             cccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCC
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPP  270 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~  270 (588)
                      ...+.|.+++.||+|+||+|+.|.+.  +..||||++........           . ....+.+.+|+.+++.+   ..
T Consensus        14 ~~~g~y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~-----------~-~~~~~~i~rEi~~~~~~---~~   78 (370)
T KOG0583|consen   14 LSIGKYELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSK-----------S-QKLDELIKREISILRRL---RS   78 (370)
T ss_pred             cccCceeeeeeecCCCCeeEEEeeeccCCCeEEEEEechhccccc-----------c-cccchhhHHHHHHHHHh---cc
Confidence            44589999999999999999999886  89999997743211100           0 11233445799999988   23


Q ss_pred             CCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4039         271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQL  349 (588)
Q Consensus       271 HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql  349 (588)
                      ||||+++++++....                            .+|+||||+ +|+|.+++.+. .++.+.++..+++|+
T Consensus        79 HpnI~~l~ev~~t~~----------------------------~~~ivmEy~~gGdL~~~i~~~-g~l~E~~ar~~F~Ql  129 (370)
T KOG0583|consen   79 HPNIIRLLEVFATPT----------------------------KIYIVMEYCSGGDLFDYIVNK-GRLKEDEARKYFRQL  129 (370)
T ss_pred             CCCEeEEEEEEecCC----------------------------eEEEEEEecCCccHHHHHHHc-CCCChHHHHHHHHHH
Confidence            999999999998742                            399999999 67999999984 499999999999999


Q ss_pred             HHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccC-CCCccccccccccccCCccccchhHHhcCCCC
Q psy4039         350 LEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNK-SGLSMQYSSADIELGGNVALMAPEVALATPGL  428 (588)
Q Consensus       350 ~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~-~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~  428 (588)
                      +.|++|||++||+||||||+|||+|.+.    +++||+|||++.... .+..      ..+.+||+.|+|||++.+... 
T Consensus       130 isav~y~H~~gi~HRDLK~ENilld~~~----~~~Kl~DFG~s~~~~~~~~~------l~t~cGsp~Y~aPEvl~~~~~-  198 (370)
T KOG0583|consen  130 ISAVAYCHSRGIVHRDLKPENILLDGNE----GNLKLSDFGLSAISPGEDGL------LKTFCGSPAYAAPEVLSGKGT-  198 (370)
T ss_pred             HHHHHHHHhCCEeeCCCCHHHEEecCCC----CCEEEeccccccccCCCCCc------ccCCCCCcccCCHHHhCCCCC-
Confidence            9999999999999999999999999873    589999999998773 2211      126899999999999987651 


Q ss_pred             ccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccccc--cccCCCCCCc-cHHHHHHHHHhhhhCCCCCCCHHHHHHH
Q psy4039         429 FSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV--NALPQLNTNV-PEVMRRLVAKLLENDPSDRPSAELAATV  505 (588)
Q Consensus       429 ~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~--~~~~~~~~~~-~~~l~~Li~~~L~~dP~~Rps~~e~l~~  505 (588)
                         +.+.++||||+||+||.|++|+.||........+..  .....+|..+ ++++++|+.+||..||.+|+|+.++++ 
T Consensus       199 ---Y~g~~aDvWS~GViLy~ml~G~~PF~d~~~~~l~~ki~~~~~~~p~~~~S~~~~~Li~~mL~~~P~~R~t~~~i~~-  274 (370)
T KOG0583|consen  199 ---YSGKAADVWSLGVILYVLLCGRLPFDDSNVPNLYRKIRKGEFKIPSYLLSPEARSLIEKMLVPDPSTRITLLEILE-  274 (370)
T ss_pred             ---cCCchhhhhhhHHHHHHHHhCCCCCCCccHHHHHHHHhcCCccCCCCcCCHHHHHHHHHHcCCCcccCCCHHHHhh-
Confidence               135789999999999999999999988543322222  2223456677 999999999999999999999999998 


Q ss_pred             HhhhhhcCCccccC
Q psy4039         506 CQLYLWAPKHWLYG  519 (588)
Q Consensus       506 L~~~~~~~h~w~~~  519 (588)
                              |||++.
T Consensus       275 --------h~w~~~  280 (370)
T KOG0583|consen  275 --------HPWFQK  280 (370)
T ss_pred             --------Chhhcc
Confidence                    999996

>KOG0661|consensus

Probab=100.00  E-value=2e-46  Score=385.47  Aligned_cols=257  Identities=25%  Similarity=0.371  Sum_probs=209.9

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      .++|.+.++||.|+||.||+|+..  +..||||.|++.-                .........||+..|+++   ..||
T Consensus         9 m~RY~~i~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf----------------~s~ee~~nLREvksL~kl---n~hp   69 (538)
T KOG0661|consen    9 MDRYTVIRKLGDGTFGSVYLAKSKETGELVAIKKMKKKF----------------YSWEECMNLREVKSLRKL---NPHP   69 (538)
T ss_pred             HHHHHHHHHhcCCcceeEEEeeecCCCceeeHHHHHhhh----------------ccHHHHHHHHHHHHHHhc---CCCC
Confidence            478999999999999999999987  7889999985311                112333446799999887   3499


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |||++.+++.+..                           ..+|+|||||+++|.+++++++..|++.++..|+.||++|
T Consensus        70 niikL~Evi~d~~---------------------------~~L~fVfE~Md~NLYqLmK~R~r~fse~~irnim~QilqG  122 (538)
T KOG0661|consen   70 NIIKLKEVIRDND---------------------------RILYFVFEFMDCNLYQLMKDRNRLFSESDIRNIMYQILQG  122 (538)
T ss_pred             cchhhHHHhhccC---------------------------ceEeeeHHhhhhhHHHHHhhcCCcCCHHHHHHHHHHHHHH
Confidence            9999999998742                           1599999999999999999988789999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |+|+|.+|+.|||+||+|||+...     ..+||+|||+||.....  .+++    ..+.|.+|.|||++....     .
T Consensus       123 L~hiHk~GfFHRDlKPENiLi~~~-----~~iKiaDFGLARev~Sk--pPYT----eYVSTRWYRAPEvLLrs~-----~  186 (538)
T KOG0661|consen  123 LAHIHKHGFFHRDLKPENILISGN-----DVIKIADFGLAREVRSK--PPYT----EYVSTRWYRAPEVLLRSG-----Y  186 (538)
T ss_pred             HHHHHhcCcccccCChhheEeccc-----ceeEecccccccccccC--CCcc----hhhhcccccchHHhhhcc-----c
Confidence            999999999999999999999965     69999999999987653  2333    678899999999998664     2


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcccccccc---------------------------ccc-----cccCCCCCCccHH
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD---------------------------YEV-----NALPQLNTNVPEV  480 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~---------------------------~~~-----~~~~~~~~~~~~~  480 (588)
                      |+.+.||||+|||++|+.+-++.|.+..+...                           +..     .....+-.+++++
T Consensus       187 Ys~pvD~wA~GcI~aEl~sLrPLFPG~sE~Dqi~KIc~VLGtP~~~~~~eg~~La~~mnf~~P~~~~~~l~~L~p~~s~~  266 (538)
T KOG0661|consen  187 YSSPVDMWAVGCIMAELYSLRPLFPGASEIDQIYKICEVLGTPDKDSWPEGYNLASAMNFRFPQVKPSPLKDLLPNASSE  266 (538)
T ss_pred             cCCchHHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHhCCCccccchhHHHHHHHhccCCCcCCCCChHHhCcccCHH
Confidence            66789999999999999999999977311100                           000     1111122457899


Q ss_pred             HHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccCCCC
Q psy4039         481 MRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGATP  522 (588)
Q Consensus       481 l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~~~  522 (588)
                      +.+||.+||.+||++||||+|+++         |||++...+
T Consensus       267 ~~~li~~ll~WDP~kRpTA~~al~---------~pffq~~~~  299 (538)
T KOG0661|consen  267 AASLIERLLAWDPDKRPTASQALQ---------HPFFQVGRA  299 (538)
T ss_pred             HHHHHHHHhcCCCccCccHHHHhc---------Ccccccccc
Confidence            999999999999999999999999         999994433

>KOG0588|consensus

Probab=100.00  E-value=1.9e-45  Score=390.57  Aligned_cols=254  Identities=25%  Similarity=0.399  Sum_probs=218.4

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      +.-|++++.||+|+-|.|..|++.  |+.+|||++.+..              +........+.+||.||+.+    .||
T Consensus        11 iGpwkLgkTLG~Gstg~vrlakh~~TGqlaaiKii~k~~--------------~~s~s~~~~IerEIviMkLi----~Hp   72 (786)
T KOG0588|consen   11 IGPWKLGKTLGKGSTGCVRLAKHAETGQLAAIKIIPKRS--------------ELSSSQPAGIEREIVIMKLI----EHP   72 (786)
T ss_pred             ccceeccccccCCCCceehhhhcccccceeEEEeecccc--------------ccccccccchhhhhHHHHHh----cCC
Confidence            377899999999999999999997  9999999996432              11222334567899999887    999


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLE  351 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~  351 (588)
                      ||+++|+++++..                            .+|+|+||+ +|.|++++-.++ .+++.++++++.||+.
T Consensus        73 nVl~LydVwe~~~----------------------------~lylvlEyv~gGELFdylv~kG-~l~e~eaa~ff~QIi~  123 (786)
T KOG0588|consen   73 NVLRLYDVWENKQ----------------------------HLYLVLEYVPGGELFDYLVRKG-PLPEREAAHFFRQILD  123 (786)
T ss_pred             CeeeeeeeeccCc----------------------------eEEEEEEecCCchhHHHHHhhC-CCCCHHHHHHHHHHHH
Confidence            9999999998743                            599999999 789999998876 9999999999999999


Q ss_pred             HHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccC
Q psy4039         352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF  431 (588)
Q Consensus       352 gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~  431 (588)
                      |+.|+|..+|+||||||+|+|||..     .++||+|||+|.....+....      +.||+|.|.|||++.+.++    
T Consensus       124 gv~yCH~~~icHRDLKpENlLLd~~-----~nIKIADFGMAsLe~~gklLe------TSCGSPHYA~PEIV~G~pY----  188 (786)
T KOG0588|consen  124 GVSYCHAFNICHRDLKPENLLLDVK-----NNIKIADFGMASLEVPGKLLE------TSCGSPHYAAPEIVSGRPY----  188 (786)
T ss_pred             HHHHHhhhcceeccCCchhhhhhcc-----cCEeeeccceeecccCCcccc------ccCCCcccCCchhhcCCCC----
Confidence            9999999999999999999999988     789999999998765554433      5689999999999999885    


Q ss_pred             CCCCcCchhhHHHHHHHHhcCCCCCcccccccccccc--ccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhh
Q psy4039         432 VNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVN--ALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLY  509 (588)
Q Consensus       432 ~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~~--~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~  509 (588)
                       .+.++||||+|||||-||+|+.||.++.....+...  ...++|..+|+++++|+.+||..||++|+|++++++     
T Consensus       189 -dG~~sDVWSCGVILfALLtG~LPFdDdNir~LLlKV~~G~f~MPs~Is~eaQdLLr~ml~VDp~~RiT~~eI~k-----  262 (786)
T KOG0588|consen  189 -DGRPSDVWSCGVILFALLTGKLPFDDDNIRVLLLKVQRGVFEMPSNISSEAQDLLRRMLDVDPSTRITTEEILK-----  262 (786)
T ss_pred             -CCCccccchhHHHHHHHHhCCCCCCCccHHHHHHHHHcCcccCCCcCCHHHHHHHHHHhccCccccccHHHHhh-----
Confidence             567899999999999999999999987554444332  233567899999999999999999999999999999     


Q ss_pred             hhcCCccccCC
Q psy4039         510 LWAPKHWLYGA  520 (588)
Q Consensus       510 ~~~~h~w~~~~  520 (588)
                          |||+...
T Consensus       263 ----HP~l~g~  269 (786)
T KOG0588|consen  263 ----HPFLSGY  269 (786)
T ss_pred             ----CchhhcC
Confidence                9999943

>KOG0593|consensus

Probab=100.00  E-value=5.5e-46  Score=363.23  Aligned_cols=252  Identities=21%  Similarity=0.264  Sum_probs=205.4

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      +.|+...++|+|+||+||+|+++  |+.||||++...+               -.+.-++-..+||++|+++    +|||
T Consensus         2 ekYE~LgkvGEGSYGvV~KCrnk~TgqIVAIKkF~Ese---------------dd~~VkKIAlREIrmLKqL----kH~N   62 (396)
T KOG0593|consen    2 EKYEKLGKVGEGSYGVVMKCRNKDTGQIVAIKKFVESE---------------DDPVVKKIALREIRMLKQL----KHEN   62 (396)
T ss_pred             cHHhhhhccccCcceEEEEeccCCcccEEEEEeeccCC---------------ccHHHHHHHHHHHHHHHhc----ccch
Confidence            56888899999999999999998  8999999984211               1112234456799999998    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      +|.|+++|...                            ..+++|+|||+.++.+-|......++...+.+++.|++.|+
T Consensus        63 LVnLiEVFrrk----------------------------rklhLVFE~~dhTvL~eLe~~p~G~~~~~vk~~l~Q~l~ai  114 (396)
T KOG0593|consen   63 LVNLIEVFRRK----------------------------RKLHLVFEYCDHTVLHELERYPNGVPSELVKKYLYQLLKAI  114 (396)
T ss_pred             HHHHHHHHHhc----------------------------ceeEEEeeecchHHHHHHHhccCCCCHHHHHHHHHHHHHHh
Confidence            99999999763                            24999999999888888877766899999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN  433 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~  433 (588)
                      .|+|++++|||||||+||||+.+     +.+||||||+|+.+..... .|    ++.+.|.+|.|||++.+...     |
T Consensus       115 ~~cHk~n~IHRDIKPENILit~~-----gvvKLCDFGFAR~L~~pgd-~Y----TDYVATRWYRaPELLvGDtq-----Y  179 (396)
T KOG0593|consen  115 HFCHKNNCIHRDIKPENILITQN-----GVVKLCDFGFARTLSAPGD-NY----TDYVATRWYRAPELLVGDTQ-----Y  179 (396)
T ss_pred             hhhhhcCeecccCChhheEEecC-----CcEEeccchhhHhhcCCcc-hh----hhhhhhhhccChhhhcccCc-----C
Confidence            99999999999999999999998     8999999999998764211 12    36789999999999988642     6


Q ss_pred             CCcCchhhHHHHHHHHhcCCCCCccccc------------------------cccccccccCCC---------CCCccHH
Q psy4039         434 YSKSDAWTAGTVAYEIFGHDNPFYQSAR------------------------NTDYEVNALPQL---------NTNVPEV  480 (588)
Q Consensus       434 ~~ksDVwS~Gvil~ElltG~~Pf~~~~~------------------------~~~~~~~~~~~~---------~~~~~~~  480 (588)
                      +..+||||+||++.||++|.+.|.+...                        +..+.....|+.         ...++.-
T Consensus       180 G~pVDiWAiGCv~aEl~~G~pL~PG~SDiDQLy~I~ktLG~L~prhq~iF~~N~~F~Gv~lP~~~~~epLe~k~p~~s~~  259 (396)
T KOG0593|consen  180 GKPVDIWAIGCVFAELLTGEPLWPGRSDIDQLYLIRKTLGNLIPRHQSIFSSNPFFHGVRLPEPEHPEPLERKYPKISNV  259 (396)
T ss_pred             CCcccchhhhHHHHHHhcCCcCCCCcchHHHHHHHHHHHcccCHHHHHHhccCCceeeeecCCCCCccchhhhcccchHH
Confidence            6789999999999999999999987311                        111111112211         1345667


Q ss_pred             HHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCcccc
Q psy4039         481 MRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLY  518 (588)
Q Consensus       481 l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~  518 (588)
                      +.|++++||+.||++|++.+|++.         |++|.
T Consensus       260 ~ld~~k~cL~~dP~~R~sc~qll~---------H~yFd  288 (396)
T KOG0593|consen  260 LLDLLKKCLKMDPDDRLSCEQLLH---------HPYFD  288 (396)
T ss_pred             HHHHHHHHhcCCccccccHHHHhc---------ChHHH
Confidence            899999999999999999999998         99883

>KOG0591|consensus

Probab=100.00  E-value=4.2e-47  Score=367.74  Aligned_cols=252  Identities=25%  Similarity=0.314  Sum_probs=206.2

Q ss_pred             ccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCC
Q psy4039         192 DVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLP  269 (588)
Q Consensus       192 ~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~  269 (588)
                      ..++.+|++.+.||+|+||.||++.+.  |..||.|.|. .              ..+....+++...|+.+|++|    
T Consensus        15 ~~~l~~y~Il~~IG~GsFg~vykv~~~~~g~l~a~K~i~-f--------------~~md~k~rq~~v~Ei~lLkQL----   75 (375)
T KOG0591|consen   15 QKTLADYQILKKIGRGSFGEVYKVQCLLDGKLVALKKIQ-F--------------GMMDAKARQDCVKEISLLKQL----   75 (375)
T ss_pred             cccHHHHHHHHHHcCCcchheEEeeeccCcchhhhhhcc-h--------------hhccHHHHHHHHHHHHHHHhc----
Confidence            344578999999999999999999886  8999999984 1              122233456667899999998    


Q ss_pred             CCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHH---hcCCCCHHHHHHH
Q psy4039         270 PHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRE---RCAQLSMHERVLL  345 (588)
Q Consensus       270 ~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~---~~~~l~~~~~~~i  345 (588)
                      +|||||+++++-...                          .+..+++|||+| .|+|.+.++.   ....+++..+|++
T Consensus        76 ~HpNIVqYy~~~f~~--------------------------~~evlnivmE~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~  129 (375)
T KOG0591|consen   76 NHPNIVQYYAHSFIE--------------------------DNEVLNIVMELCDAGDLSQMIKHFKKQKRLIPEKTVWKY  129 (375)
T ss_pred             CCchHHHHHHHhhhc--------------------------cchhhHHHHHhhcccCHHHHHHHHHhccccCchHHHHHH
Confidence            999999998743221                          122489999999 6999999873   3457999999999


Q ss_pred             HHHHHHHHHHHHh--CC--ceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhH
Q psy4039         346 FTQLLEGVTHLNM--HR--TAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEV  421 (588)
Q Consensus       346 ~~ql~~gL~yLH~--~~--IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~  421 (588)
                      +.|++.||.++|+  ..  |+||||||.||+|+.+     +.+||+|||+++.+.....     .....+|||.||+||.
T Consensus       130 f~QL~~AL~~cH~~~~r~~VmHRDIKPaNIFl~~~-----gvvKLGDfGL~r~l~s~~t-----fA~S~VGTPyYMSPE~  199 (375)
T KOG0591|consen  130 FVQLCRALYHCHSKIPRGTVMHRDIKPANIFLTAN-----GVVKLGDFGLGRFLSSKTT-----FAHSLVGTPYYMSPER  199 (375)
T ss_pred             HHHHHHHHHHHhccccccceeeccCcchheEEcCC-----CceeeccchhHhHhcchhH-----HHHhhcCCCcccCHHH
Confidence            9999999999999  45  9999999999999988     8999999999999876432     2236899999999999


Q ss_pred             HhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccc---cccccccccCCCC-CCccHHHHHHHHHhhhhCCCCCC
Q psy4039         422 ALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSAR---NTDYEVNALPQLN-TNVPEVMRRLVAKLLENDPSDRP  497 (588)
Q Consensus       422 l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~---~~~~~~~~~~~~~-~~~~~~l~~Li~~~L~~dP~~Rp  497 (588)
                      +...+      ++.||||||+||++|||+.-.+||+++..   ...+.....+++| ..+|.++..||..|+..||+.||
T Consensus       200 i~~~~------Y~~kSDiWslGCllyEMcaL~~PF~g~n~~~L~~KI~qgd~~~~p~~~YS~~l~~li~~ci~vd~~~RP  273 (375)
T KOG0591|consen  200 IHESG------YNFKSDIWSLGCLLYEMCALQSPFYGDNLLSLCKKIEQGDYPPLPDEHYSTDLRELINMCIAVDPEQRP  273 (375)
T ss_pred             HhcCC------CCcchhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHcCCCCCCcHHHhhhHHHHHHHHHccCCcccCC
Confidence            99887      56899999999999999999999998632   2233445666677 67899999999999999999999


Q ss_pred             CHHHHHH
Q psy4039         498 SAELAAT  504 (588)
Q Consensus       498 s~~e~l~  504 (588)
                      +.-..+.
T Consensus       274 ~t~~~v~  280 (375)
T KOG0591|consen  274 DTVPYVQ  280 (375)
T ss_pred             CcchHHH
Confidence            8544433

>KOG0600|consensus

Probab=100.00  E-value=3.1e-45  Score=379.24  Aligned_cols=262  Identities=23%  Similarity=0.292  Sum_probs=215.0

Q ss_pred             CccccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhc
Q psy4039         189 DVDDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVE  266 (588)
Q Consensus       189 ~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~  266 (588)
                      .+.....+.|+..++||+|+||.||+|++.  |+.||+|+++-.....               ..-....+||.||++| 
T Consensus       110 ~w~~r~~~~feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~---------------~~~~t~~REI~ILr~l-  173 (560)
T KOG0600|consen  110 GWGPRRADSFEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKE---------------GFPITAIREIKILRRL-  173 (560)
T ss_pred             cccccchHHHHHHHHhcCcchhheeEeeecccCcEEEEEEeecccCCC---------------cchHHHHHHHHHHHhc-
Confidence            334445588999999999999999999997  8899999996322111               1223446799999998 


Q ss_pred             CCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHH
Q psy4039         267 NLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLF  346 (588)
Q Consensus       267 ~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~  346 (588)
                         .|||||+|.+..++..                          .+++|+|+|||+.+|..++...+..|++.++..++
T Consensus       174 ---~HpNIikL~eivt~~~--------------------------~~siYlVFeYMdhDL~GLl~~p~vkft~~qIKc~m  224 (560)
T KOG0600|consen  174 ---DHPNIIKLEEIVTSKL--------------------------SGSIYLVFEYMDHDLSGLLSSPGVKFTEPQIKCYM  224 (560)
T ss_pred             ---CCCcccceeeEEEecC--------------------------CceEEEEEecccchhhhhhcCCCcccChHHHHHHH
Confidence               9999999999988741                          23599999999999999999887899999999999


Q ss_pred             HHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCC
Q psy4039         347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP  426 (588)
Q Consensus       347 ~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~  426 (588)
                      +||+.||+|||++||+|||||.+|||||.+     +.+||+|||+|+.+......+++    ..+-|++|.|||++.+..
T Consensus       225 kQLl~Gl~~cH~~gvlHRDIK~SNiLidn~-----G~LKiaDFGLAr~y~~~~~~~~T----~rVvTLWYRpPELLLG~t  295 (560)
T KOG0600|consen  225 KQLLEGLEYCHSRGVLHRDIKGSNILIDNN-----GVLKIADFGLARFYTPSGSAPYT----SRVVTLWYRPPELLLGAT  295 (560)
T ss_pred             HHHHHHHHHHhhcCeeeccccccceEEcCC-----CCEEeccccceeeccCCCCcccc----cceEEeeccChHHhcCCc
Confidence            999999999999999999999999999988     99999999999987765544444    466799999999999876


Q ss_pred             CCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccc---------------ccccccccC----------------CCCC
Q psy4039         427 GLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARN---------------TDYEVNALP----------------QLNT  475 (588)
Q Consensus       427 ~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~---------------~~~~~~~~~----------------~~~~  475 (588)
                      .     |+.++|+||+||||.||+.|++.|.+....               ..+....+|                +...
T Consensus       296 ~-----Yg~aVDlWS~GCIl~El~~gkPI~~G~tEveQl~kIfklcGSP~e~~W~~~kLP~~~~~kp~~~y~r~l~E~~~  370 (560)
T KOG0600|consen  296 S-----YGTAVDLWSVGCILAELFLGKPILQGRTEVEQLHKIFKLCGSPTEDYWPVSKLPHATIFKPQQPYKRRLRETFK  370 (560)
T ss_pred             c-----cccceeehhhhHHHHHHHcCCCCcCCccHHHHHHHHHHHhCCCChhccccccCCcccccCCCCcccchHHHHhc
Confidence            3     678899999999999999999999873111               111111111                0123


Q ss_pred             CccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCcccc
Q psy4039         476 NVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLY  518 (588)
Q Consensus       476 ~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~  518 (588)
                      .+|+.+.+|+..||..||++|.|+.++++         ++||.
T Consensus       371 ~~~~~~l~Ll~~lL~ldP~kR~tA~~aL~---------seyF~  404 (560)
T KOG0600|consen  371 DFPASALDLLEKLLSLDPDKRGTASSALQ---------SEYFT  404 (560)
T ss_pred             cCCHHHHHHHHHHhccCccccccHHHHhc---------Ccccc
Confidence            56888999999999999999999999999         89985

>KOG0197|consensus

Probab=100.00  E-value=4.6e-45  Score=382.96  Aligned_cols=258  Identities=22%  Similarity=0.296  Sum_probs=216.2

Q ss_pred             CCccccccCCeEEeeeecccCceeEEEEEECCe-eEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhc
Q psy4039         188 PDVDDVKVDDIQIGKFIAKGTNAVVYEATFRGV-EYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVE  266 (588)
Q Consensus       188 ~~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~g~-~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~  266 (588)
                      ...|++.-+.+.+.+.||+|.||.|+.|.+++. .||||.+...                  .+..+.|.+|+.+|++| 
T Consensus       198 ~d~wei~r~~l~l~~~LG~G~FG~V~~g~~~~~~~vavk~ik~~------------------~m~~~~f~~Ea~iMk~L-  258 (468)
T KOG0197|consen  198 RDPWEIPREELKLIRELGSGQFGEVWLGKWNGSTKVAVKTIKEG------------------SMSPEAFLREAQIMKKL-  258 (468)
T ss_pred             cCCeeecHHHHHHHHHhcCCccceEEEEEEcCCCcccceEEecc------------------ccChhHHHHHHHHHHhC-
Confidence            566788888899999999999999999999976 9999999542                  22446677899999998 


Q ss_pred             CCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHH-hcCCCCHHHHHH
Q psy4039         267 NLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRE-RCAQLSMHERVL  344 (588)
Q Consensus       267 ~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~-~~~~l~~~~~~~  344 (588)
                         +|+|||+++++|..+.|                            +||||||+ .|+|.+||+. .+..++..+.+.
T Consensus       259 ---~H~~lV~l~gV~~~~~p----------------------------iyIVtE~m~~GsLl~yLr~~~~~~l~~~~Ll~  307 (468)
T KOG0197|consen  259 ---RHEKLVKLYGVCTKQEP----------------------------IYIVTEYMPKGSLLDYLRTREGGLLNLPQLLD  307 (468)
T ss_pred             ---cccCeEEEEEEEecCCc----------------------------eEEEEEecccCcHHHHhhhcCCCccchHHHHH
Confidence               99999999999987532                            99999999 7999999997 456899999999


Q ss_pred             HHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhc
Q psy4039         345 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALA  424 (588)
Q Consensus       345 i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~  424 (588)
                      ++.|||+|++||+++++|||||-+.|||++++     ..+||+|||+||...++......    ..--.+.|.|||.+..
T Consensus       308 ~a~qIaeGM~YLes~~~IHRDLAARNiLV~~~-----~~vKIsDFGLAr~~~d~~Y~~~~----~~kfPIkWtAPEa~~~  378 (468)
T KOG0197|consen  308 FAAQIAEGMAYLESKNYIHRDLAARNILVDED-----LVVKISDFGLARLIGDDEYTASE----GGKFPIKWTAPEALNY  378 (468)
T ss_pred             HHHHHHHHHHHHHhCCccchhhhhhheeeccC-----ceEEEcccccccccCCCceeecC----CCCCCceecCHHHHhh
Confidence            99999999999999999999999999999988     89999999999965543221111    1123568999999987


Q ss_pred             CCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHH
Q psy4039         425 TPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE  500 (588)
Q Consensus       425 ~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~  500 (588)
                      ..      ++.|||||||||+||||+| |+.||.+......   .+.+.+.+-|..||+++.++|..||+.+|++|||++
T Consensus       379 ~~------FS~kSDVWSFGVlL~E~fT~G~~py~~msn~ev~~~le~GyRlp~P~~CP~~vY~lM~~CW~~~P~~RPtF~  452 (468)
T KOG0197|consen  379 GK------FSSKSDVWSFGVLLWELFTYGRVPYPGMSNEEVLELLERGYRLPRPEGCPDEVYELMKSCWHEDPEDRPTFE  452 (468)
T ss_pred             CC------cccccceeehhhhHHHHhccCCCCCCCCCHHHHHHHHhccCcCCCCCCCCHHHHHHHHHHhhCCcccCCCHH
Confidence            65      5689999999999999998 7888877433222   234455567889999999999999999999999999


Q ss_pred             HHHHHHhhhh
Q psy4039         501 LAATVCQLYL  510 (588)
Q Consensus       501 e~l~~L~~~~  510 (588)
                      .+...+..+.
T Consensus       453 ~L~~~l~~~~  462 (468)
T KOG0197|consen  453 TLREVLEDFF  462 (468)
T ss_pred             HHHHHHHHhh
Confidence            8888777554

>KOG0585|consensus

Probab=100.00  E-value=2e-45  Score=377.61  Aligned_cols=280  Identities=20%  Similarity=0.279  Sum_probs=213.3

Q ss_pred             CCccccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhh--cccccchhhhHHHHHh
Q psy4039         188 PDVDDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKEL--LPLRKPLRLNEDMLMN  263 (588)
Q Consensus       188 ~~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~--~~~~~~~~~~Ei~il~  263 (588)
                      .......+++|++++.||+|.||.|-+|++.  ++.||||++.+.....+.     .+....  .....+...+||.||+
T Consensus        89 ~~~~~k~lNqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~-----~~~~~~a~~~~~~ekv~~EIailK  163 (576)
T KOG0585|consen   89 DDQDRKQLNQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQY-----GFPRQPAMKLMPIEKVRREIAILK  163 (576)
T ss_pred             CcccceehhheehhhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhc-----ccccccccccCcHHHHHHHHHHHH
Confidence            4556677899999999999999999999997  889999999653322110     011111  1112246788999999


Q ss_pred             hhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCC-CcHHHHHHHhcCCCCHHHH
Q psy4039         264 SVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYN-TDLRNYLRERCAQLSMHER  342 (588)
Q Consensus       264 ~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~-gsL~~~L~~~~~~l~~~~~  342 (588)
                      ++    .|||||+|+++..|..                          ...+|||+|||. |.+...=.+ ...+++.++
T Consensus       164 kl----~H~nVV~LiEvLDDP~--------------------------s~~~YlVley~s~G~v~w~p~d-~~els~~~A  212 (576)
T KOG0585|consen  164 KL----HHPNVVKLIEVLDDPE--------------------------SDKLYLVLEYCSKGEVKWCPPD-KPELSEQQA  212 (576)
T ss_pred             hc----CCcCeeEEEEeecCcc--------------------------cCceEEEEEeccCCccccCCCC-cccccHHHH
Confidence            98    9999999999987742                          235999999994 654322111 223999999


Q ss_pred             HHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHH
Q psy4039         343 VLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVA  422 (588)
Q Consensus       343 ~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l  422 (588)
                      ++++++++.||+|||.+|||||||||+|+||+++     +++||+|||.+.....+............+|||+|||||.+
T Consensus       213 r~ylrDvv~GLEYLH~QgiiHRDIKPsNLLl~~~-----g~VKIsDFGVs~~~~~~~~~~~d~~L~~tvGTPAF~APE~c  287 (576)
T KOG0585|consen  213 RKYLRDVVLGLEYLHYQGIIHRDIKPSNLLLSSD-----GTVKISDFGVSNEFPQGSDEGSDDQLSRTVGTPAFFAPELC  287 (576)
T ss_pred             HHHHHHHHHHHHHHHhcCeeccccchhheEEcCC-----CcEEeeccceeeecccCCccccHHHHhhcCCCccccchHhh
Confidence            9999999999999999999999999999999998     89999999999876544222211122246899999999999


Q ss_pred             hcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccccccccC--CCC--CCccHHHHHHHHHhhhhCCCCCCC
Q psy4039         423 LATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALP--QLN--TNVPEVMRRLVAKLLENDPSDRPS  498 (588)
Q Consensus       423 ~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~~~~~--~~~--~~~~~~l~~Li~~~L~~dP~~Rps  498 (588)
                      .+....+  ..+.+.||||+||+||.|+.|+.||.++.....+......  .+|  ..+.++++|||.+||.+||++|++
T Consensus       288 ~~~~~~~--~~g~a~DiWalGVTLYCllfG~~PF~~~~~~~l~~KIvn~pL~fP~~pe~~e~~kDli~~lL~KdP~~Ri~  365 (576)
T KOG0585|consen  288 SGGNSFS--YSGFALDIWALGVTLYCLLFGQLPFFDDFELELFDKIVNDPLEFPENPEINEDLKDLIKRLLEKDPEQRIT  365 (576)
T ss_pred             cCCCCcc--ccchhhhhhhhhhhHHHhhhccCCcccchHHHHHHHHhcCcccCCCcccccHHHHHHHHHHhhcChhheee
Confidence            8754311  1456789999999999999999999986544433322111  122  246789999999999999999999


Q ss_pred             HHHHHHHHhhhhhcCCccccC
Q psy4039         499 AELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       499 ~~e~l~~L~~~~~~~h~w~~~  519 (588)
                      ..++..         |||...
T Consensus       366 l~~ik~---------Hpwvt~  377 (576)
T KOG0585|consen  366 LPDIKL---------HPWVTR  377 (576)
T ss_pred             hhhhee---------cceecc
Confidence            999988         999983

>KOG0198|consensus

Probab=100.00  E-value=4.6e-45  Score=372.57  Aligned_cols=259  Identities=23%  Similarity=0.299  Sum_probs=208.7

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      .++..++.||+|+||.||++.+.  |...|||.+...+    ..             ..+.+.+|+.+|.++    +|||
T Consensus        17 ~~~~~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~----~~-------------~~~~l~~Ei~iL~~l----~~p~   75 (313)
T KOG0198|consen   17 SNWSKGKLLGRGSFGSVYLATNKKTGELMAVKSVELED----SP-------------TSESLEREIRILSRL----NHPN   75 (313)
T ss_pred             chhhhhccccCccceEEEEEEecCCCcceeeeeeeccc----ch-------------hHHHHHHHHHHHHhC----CCCC
Confidence            56888899999999999999997  6899999984321    00             033456799999998    7999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      ||+++|......                      +    ..++++|||+ +|+|.+++...+..|++..+..+.+|+++|
T Consensus        76 IV~~~G~~~~~~----------------------~----~~~~i~mEy~~~GsL~~~~~~~g~~l~E~~v~~ytr~iL~G  129 (313)
T KOG0198|consen   76 IVQYYGSSSSRE----------------------N----DEYNIFMEYAPGGSLSDLIKRYGGKLPEPLVRRYTRQILEG  129 (313)
T ss_pred             EEeeCCcccccc----------------------C----eeeEeeeeccCCCcHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence            999998754321                      0    2489999999 789999999875579999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcC-CCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDC-SEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF  431 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~-~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~  431 (588)
                      |.|||++|||||||||+|||++. +     +.+||+|||+++.....  ...........||+.|||||++.....    
T Consensus       130 L~ylHs~g~vH~DiK~~NiLl~~~~-----~~~KlaDFG~a~~~~~~--~~~~~~~~~~~Gtp~~maPEvi~~g~~----  198 (313)
T KOG0198|consen  130 LAYLHSKGIVHCDIKPANILLDPSN-----GDVKLADFGLAKKLESK--GTKSDSELSVQGTPNYMAPEVIRNGEV----  198 (313)
T ss_pred             HHHHHhCCEeccCcccceEEEeCCC-----CeEEeccCccccccccc--cccccccccccCCccccCchhhcCCCc----
Confidence            99999999999999999999998 5     79999999999876531  111122235789999999999985211    


Q ss_pred             CCCCcCchhhHHHHHHHHhcCCCCCccc--ccc---ccccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHH
Q psy4039         432 VNYSKSDAWTAGTVAYEIFGHDNPFYQS--ARN---TDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVC  506 (588)
Q Consensus       432 ~~~~ksDVwS~Gvil~ElltG~~Pf~~~--~~~---~~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L  506 (588)
                       ...++||||+||++.||+||.+||...  ...   ........|.+|..+|+++++++.+|+..||++||||+++++  
T Consensus       199 -~~~~sDiWSlGCtVvEM~Tg~~PW~~~~~~~~~~~~ig~~~~~P~ip~~ls~~a~~Fl~~C~~~~p~~Rpta~eLL~--  275 (313)
T KOG0198|consen  199 -ARRESDIWSLGCTVVEMLTGKPPWSEFFEEAEALLLIGREDSLPEIPDSLSDEAKDFLRKCFKRDPEKRPTAEELLE--  275 (313)
T ss_pred             -CCccchhhhcCCEEEeccCCCCcchhhcchHHHHHHHhccCCCCCCCcccCHHHHHHHHHHhhcCcccCcCHHHHhh--
Confidence             124799999999999999999999862  111   111123456888999999999999999999999999999999  


Q ss_pred             hhhhhcCCccccCCCC
Q psy4039         507 QLYLWAPKHWLYGATP  522 (588)
Q Consensus       507 ~~~~~~~h~w~~~~~~  522 (588)
                             |||+....+
T Consensus       276 -------hpf~~~~~~  284 (313)
T KOG0198|consen  276 -------HPFLKQNSI  284 (313)
T ss_pred             -------Chhhhcccc
Confidence                   999985544

>KOG0599|consensus

Probab=100.00  E-value=1.6e-45  Score=354.97  Aligned_cols=260  Identities=23%  Similarity=0.397  Sum_probs=212.5

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ..|...+.||+|..++|.+|.++  +.++|+|+|........... .+++.        +.-..|+.||+++   +.|||
T Consensus        17 ~~y~pkeilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~-~~~~~--------EaT~~Ev~ILRqv---~GHP~   84 (411)
T KOG0599|consen   17 AKYEPKEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGET-PYEMR--------EATRQEISILRQV---MGHPY   84 (411)
T ss_pred             hhcChHHHhcccchhhhhhhhhcccccceeEEEEEecccccCCcc-HHHHH--------HHHHHHHHHHHHh---cCCCc
Confidence            66778889999999999999987  88999999975443332222 22222        2234599999998   79999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++.++|+...                            .+|+|+|.| .|.|.+||.+.- .+++.....|++|+.+|
T Consensus        85 II~l~D~yes~s----------------------------F~FlVFdl~prGELFDyLts~V-tlSEK~tR~iMrqlfeg  135 (411)
T KOG0599|consen   85 IIDLQDVYESDA----------------------------FVFLVFDLMPRGELFDYLTSKV-TLSEKETRRIMRQLFEG  135 (411)
T ss_pred             EEEeeeeccCcc----------------------------hhhhhhhhcccchHHHHhhhhe-eecHHHHHHHHHHHHHH
Confidence            999999998742                            489999999 699999998864 89999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      ++|||.++||||||||+|||+|++     .++||+|||+|..+..|....      ..||||+|+|||.+..+-..-.--
T Consensus       136 VeylHa~~IVHRDLKpENILlddn-----~~i~isDFGFa~~l~~GekLr------elCGTPgYLAPEtikC~m~e~~pG  204 (411)
T KOG0599|consen  136 VEYLHARNIVHRDLKPENILLDDN-----MNIKISDFGFACQLEPGEKLR------ELCGTPGYLAPETIKCSMYENHPG  204 (411)
T ss_pred             HHHHHHhhhhhcccChhheeeccc-----cceEEeccceeeccCCchhHH------HhcCCCcccChhheeeecccCCCC
Confidence            999999999999999999999998     899999999999988765442      689999999999987542211111


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCccc--------cccccccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHH
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQS--------ARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAAT  504 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~--------~~~~~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~  504 (588)
                      |+..+|+||+|||||.|+.|.+||+..        +....+..  ..+-|.+++.+.+|||.+||+.||.+|.|++|+++
T Consensus       205 Ys~EVD~Wa~GVImyTLLaGcpPFwHRkQmlMLR~ImeGkyqF--~speWadis~~~KdLIsrlLqVdp~~Ritake~La  282 (411)
T KOG0599|consen  205 YSKEVDEWACGVIMYTLLAGCPPFWHRKQMLMLRMIMEGKYQF--RSPEWADISATVKDLISRLLQVDPTKRITAKEALA  282 (411)
T ss_pred             ccchhhHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhccccc--CCcchhhccccHHHHHHHHHeeCchhcccHHHHhc
Confidence            445699999999999999999999873        22233332  22456789999999999999999999999999999


Q ss_pred             HHhhhhhcCCcccc
Q psy4039         505 VCQLYLWAPKHWLY  518 (588)
Q Consensus       505 ~L~~~~~~~h~w~~  518 (588)
                               |||+.
T Consensus       283 ---------Hpff~  287 (411)
T KOG0599|consen  283 ---------HPFFI  287 (411)
T ss_pred             ---------ChHHH
Confidence                     99994

>KOG0605|consensus

Probab=100.00  E-value=1.4e-44  Score=377.56  Aligned_cols=259  Identities=22%  Similarity=0.344  Sum_probs=208.1

Q ss_pred             ccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCC
Q psy4039         192 DVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLP  269 (588)
Q Consensus       192 ~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~  269 (588)
                      .+.+++|++++.||+|+||.||.|+-+  |..+|+|++++.+....          +    ...-+..|-.||...    
T Consensus       137 r~~~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~----------~----Qv~hV~aERdiL~~~----  198 (550)
T KOG0605|consen  137 RLSLDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKK----------N----QVEHVRAERDILAEV----  198 (550)
T ss_pred             cCCcccchhheeeccccceeEEEEEEccCCcEEeeecccHHHHHhh----------h----hHHHHHHHHHHhhhc----
Confidence            667899999999999999999999987  89999999975332110          0    122344577788775    


Q ss_pred             CCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHH
Q psy4039         270 PHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQ  348 (588)
Q Consensus       270 ~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~q  348 (588)
                      .+|+||+||..|++..                            ++||||||. +|++..+|...+ .|++..+..++.+
T Consensus       199 ds~~vVKLyYsFQD~~----------------------------~LYLiMEylPGGD~mTLL~~~~-~L~e~~arfYiaE  249 (550)
T KOG0605|consen  199 DSPWVVKLYYSFQDKE----------------------------YLYLIMEYLPGGDMMTLLMRKD-TLTEDWARFYIAE  249 (550)
T ss_pred             CCCcEEEEEEEecCCC----------------------------eeEEEEEecCCccHHHHHHhcC-cCchHHHHHHHHH
Confidence            9999999999999843                            599999999 689999998776 8999999999999


Q ss_pred             HHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCC-------------------cccccc----
Q psy4039         349 LLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGL-------------------SMQYSS----  405 (588)
Q Consensus       349 l~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~-------------------~~~~~~----  405 (588)
                      ++.|+.-||..|+|||||||+|+|||..     |++||+|||+|..+....                   ......    
T Consensus       250 ~vlAI~~iH~~gyIHRDIKPdNlLiD~~-----GHiKLSDFGLs~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (550)
T KOG0605|consen  250 TVLAIESIHQLGYIHRDIKPDNLLIDAK-----GHIKLSDFGLSTGLDKKHRIESYRLDEQMQINLSEAKPSDFPKFNTP  324 (550)
T ss_pred             HHHHHHHHHHcCcccccCChhheeecCC-----CCEeeccccccchhhhhhhhhhhcchhhhhhhhccCCCccccccccc
Confidence            9999999999999999999999999998     999999999996432200                   000000    


Q ss_pred             -------------------ccccccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccccc
Q psy4039         406 -------------------ADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE  466 (588)
Q Consensus       406 -------------------~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~  466 (588)
                                         .....+|||.|||||++.+..      ++..||+||+|||+||||.|.+||.++.....+.
T Consensus       325 ~~~~~~~~~~~~w~~nrr~~a~StVGTPDYiAPEVll~kg------Y~~~cDwWSLG~ImyEmLvGyPPF~s~tp~~T~r  398 (550)
T KOG0605|consen  325 RSTMSRREQLQTWKRNRRQLAYSTVGTPDYIAPEVLLGKG------YGKECDWWSLGCIMYEMLVGYPPFCSETPQETYR  398 (550)
T ss_pred             cchhhHHHHHHHHHhhhhhhhhcccCCccccchHHHhcCC------CCccccHHHHHHHHHHHHhCCCCCCCCCHHHHHH
Confidence                               012357999999999999887      4467999999999999999999999875544432


Q ss_pred             c------cccCCCCCCccHHHHHHHHHhhhhCCCCCCC---HHHHHHHHhhhhhcCCcccc
Q psy4039         467 V------NALPQLNTNVPEVMRRLVAKLLENDPSDRPS---AELAATVCQLYLWAPKHWLY  518 (588)
Q Consensus       467 ~------~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps---~~e~l~~L~~~~~~~h~w~~  518 (588)
                      .      ...-+-...++++++|||.+||. ||++|..   ++|+..         ||||+
T Consensus       399 kI~nwr~~l~fP~~~~~s~eA~DLI~rll~-d~~~RLG~~G~~EIK~---------HPfF~  449 (550)
T KOG0605|consen  399 KIVNWRETLKFPEEVDLSDEAKDLITRLLC-DPENRLGSKGAEEIKK---------HPFFK  449 (550)
T ss_pred             HHHHHhhhccCCCcCcccHHHHHHHHHHhc-CHHHhcCcccHHHHhc---------CCccc
Confidence            2      12222234677999999999999 9999975   778777         99998

>KOG0582|consensus

Probab=100.00  E-value=7.3e-44  Score=364.17  Aligned_cols=267  Identities=23%  Similarity=0.296  Sum_probs=212.4

Q ss_pred             CCccccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhh
Q psy4039         188 PDVDDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSV  265 (588)
Q Consensus       188 ~~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l  265 (588)
                      ...+....++|++.+.||.|..++||+|++.  +..||||++.......                .-..+.+|+..|..+
T Consensus        18 ~~~~p~n~~~YeL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~----------------~ld~l~kE~~~msl~   81 (516)
T KOG0582|consen   18 EKEFPLNAKDYELQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNN----------------DLDALRKEVQTMSLI   81 (516)
T ss_pred             cccCCCCccceeEEEEEeccceeEeeeeeecccCCEEEEEEeehhhhhh----------------hHHHHHHHHHHhhhc
Confidence            3456677799999999999999999999997  8899999994322111                123345688888877


Q ss_pred             cCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh-cCCCCHHHHH
Q psy4039         266 ENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER-CAQLSMHERV  343 (588)
Q Consensus       266 ~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~-~~~l~~~~~~  343 (588)
                          +|||||+++..|....                            .+|+||.|| .||+.+.++.. ...++|..+.
T Consensus        82 ----~HPNIv~~~~sFvv~~----------------------------~LWvVmpfMa~GS~ldIik~~~~~Gl~E~~Ia  129 (516)
T KOG0582|consen   82 ----DHPNIVTYHCSFVVDS----------------------------ELWVVMPFMAGGSLLDIIKTYYPDGLEEASIA  129 (516)
T ss_pred             ----CCCCcceEEEEEEecc----------------------------eeEEeehhhcCCcHHHHHHHHccccccHHHHH
Confidence                9999999999998742                            599999999 58999999875 4479999999


Q ss_pred             HHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCC-CCccccccccccccCCccccchhHH
Q psy4039         344 LLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKS-GLSMQYSSADIELGGNVALMAPEVA  422 (588)
Q Consensus       344 ~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~-~~~~~~~~~~~~~~GT~~Y~APE~l  422 (588)
                      .|++++++||.|||.+|.||||||+.||||+++     |.+||+|||.+...-. +....+. . .+++||+.|||||++
T Consensus       130 ~iLre~LkaL~YLH~~G~IHRdvKAgnILi~~d-----G~VkLadFgvsa~l~~~G~R~~~r-f-~tfvgtp~wmAPEvl  202 (516)
T KOG0582|consen  130 TILREVLKALDYLHQNGHIHRDVKAGNILIDSD-----GTVKLADFGVSASLFDSGDRQVTR-F-NTFVGTPCWMAPEVL  202 (516)
T ss_pred             HHHHHHHHHHHHHHhcCceecccccccEEEcCC-----CcEEEcCceeeeeecccCceeeEe-e-ccccCcccccChHHh
Confidence            999999999999999999999999999999999     9999999998776444 3222211 1 468999999999997


Q ss_pred             hcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccc--cccccCC----------CCCCccHHHHHHHHHhhh
Q psy4039         423 LATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY--EVNALPQ----------LNTNVPEVMRRLVAKLLE  490 (588)
Q Consensus       423 ~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~--~~~~~~~----------~~~~~~~~l~~Li~~~L~  490 (588)
                      .++...    |+.|+||||||+++.||.+|..||..-......  .....|+          -...++..++++|..||+
T Consensus       203 ~q~~~G----YdfKaDIwSfGITA~ELA~G~aPf~k~pPmkvLl~tLqn~pp~~~t~~~~~d~~k~~~ksf~e~i~~CL~  278 (516)
T KOG0582|consen  203 MQQLHG----YDFKADIWSFGITACELAHGHAPFSKYPPMKVLLLTLQNDPPTLLTSGLDKDEDKKFSKSFREMIALCLV  278 (516)
T ss_pred             hhcccC----ccchhhhhhhhHHHHHHhcCCCCcccCChHHHHHHHhcCCCCCcccccCChHHhhhhcHHHHHHHHHHhh
Confidence            665544    568999999999999999999999763222111  1111111          113456789999999999


Q ss_pred             hCCCCCCCHHHHHHHHhhhhhcCCccccCCCC
Q psy4039         491 NDPSDRPSAELAATVCQLYLWAPKHWLYGATP  522 (588)
Q Consensus       491 ~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~~~  522 (588)
                      .||.+|||++++++         |+||+....
T Consensus       279 kDP~kRptAskLlk---------h~FFk~~k~  301 (516)
T KOG0582|consen  279 KDPSKRPTASKLLK---------HAFFKKAKS  301 (516)
T ss_pred             cCcccCCCHHHHhc---------cHHHhhccc
Confidence            99999999999999         999985443

>KOG0578|consensus

Probab=100.00  E-value=1.4e-44  Score=380.18  Aligned_cols=251  Identities=26%  Similarity=0.349  Sum_probs=211.0

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ..|..-.+||+|+.|.||.|...  ++.||||+|....                 ...++.+.+|+.+|+..    +|+|
T Consensus       273 ~~y~~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~-----------------Q~~keLilnEi~Vm~~~----~H~N  331 (550)
T KOG0578|consen  273 SKYTDFKKIGQGATGGVYVARKISTKQEVAIKRMDLRK-----------------QPKKELLLNEILVMRDL----HHPN  331 (550)
T ss_pred             hhhcchhhhccccccceeeeeeccCCceEEEEEEEecc-----------------CCchhhhHHHHHHHHhc----cchH
Confidence            56888889999999999999887  7899999995322                 12456677899999997    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      ||.+++.|--.                            +.+|+||||+ +|+|.+.+...  .++|.++..|++++++|
T Consensus       332 iVnfl~Sylv~----------------------------deLWVVMEym~ggsLTDvVt~~--~~~E~qIA~Icre~l~a  381 (550)
T KOG0578|consen  332 IVNFLDSYLVG----------------------------DELWVVMEYMEGGSLTDVVTKT--RMTEGQIAAICREILQG  381 (550)
T ss_pred             HHHHHHHhccc----------------------------ceeEEEEeecCCCchhhhhhcc--cccHHHHHHHHHHHHHH
Confidence            99999876542                            3599999999 68999999877  79999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |+|||.+||+|||||.+|||++.+     +.+||+|||+|..+.....     ...+.+|||.|||||++....      
T Consensus       382 L~fLH~~gIiHrDIKSDnILL~~~-----g~vKltDFGFcaqi~~~~~-----KR~TmVGTPYWMAPEVvtrk~------  445 (550)
T KOG0578|consen  382 LKFLHARGIIHRDIKSDNILLTMD-----GSVKLTDFGFCAQISEEQS-----KRSTMVGTPYWMAPEVVTRKP------  445 (550)
T ss_pred             HHHHHhcceeeeccccceeEeccC-----CcEEEeeeeeeeccccccC-----ccccccCCCCccchhhhhhcc------
Confidence            999999999999999999999988     8999999999988765432     223678999999999998877      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcccccccc-c--cccccC--CCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHh
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD-Y--EVNALP--QLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~-~--~~~~~~--~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~  507 (588)
                      |++|.||||||++++||+-|++||..+..... +  .....|  ..++.+++++++++.+||+.|+++|+++.++|+   
T Consensus       446 YG~KVDIWSLGIMaIEMveGEPPYlnE~PlrAlyLIa~ng~P~lk~~~klS~~~kdFL~~cL~~dv~~RasA~eLL~---  522 (550)
T KOG0578|consen  446 YGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPKLKNPEKLSPELKDFLDRCLVVDVEQRASAKELLE---  522 (550)
T ss_pred             cCccccchhhhhHHHHHhcCCCCccCCChHHHHHHHhhcCCCCcCCccccCHHHHHHHHHHhhcchhcCCCHHHHhc---
Confidence            67899999999999999999999986432221 1  112222  345789999999999999999999999999999   


Q ss_pred             hhhhcCCccccCCCC
Q psy4039         508 LYLWAPKHWLYGATP  522 (588)
Q Consensus       508 ~~~~~~h~w~~~~~~  522 (588)
                            ||||+...+
T Consensus       523 ------HpFl~~a~p  531 (550)
T KOG0578|consen  523 ------HPFLKMAKP  531 (550)
T ss_pred             ------ChhhhhcCC
Confidence                  999974444

>KOG0033|consensus

Probab=100.00  E-value=8.9e-46  Score=352.09  Aligned_cols=252  Identities=22%  Similarity=0.360  Sum_probs=208.8

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|.|++||+|.+.  |+.+|+|++....           |.    ....+.+.+|+.|-+.|    +|||
T Consensus        11 d~y~l~e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k-----------~~----~~~~e~l~rEarIC~~L----qHP~   71 (355)
T KOG0033|consen   11 DNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKK-----------LS----ARDFQKLEREARICRKL----QHPN   71 (355)
T ss_pred             hhhhHHHHHccCchHHHHHHHhccchHHHHHHHhhhhh-----------hc----cccHHHHHHHHHHHHhc----CCCc
Confidence            77999999999999999999987  8999999984211           11    12456677899998887    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      ||+|++.+.+.                       +     ..|+|+|++ +++|..-|-.+. .+++..+...++||+++
T Consensus        72 IvrL~~ti~~~-----------------------~-----~~ylvFe~m~G~dl~~eIV~R~-~ySEa~aSH~~rQiLea  122 (355)
T KOG0033|consen   72 IVRLHDSIQEE-----------------------S-----FHYLVFDLVTGGELFEDIVARE-FYSEADASHCIQQILEA  122 (355)
T ss_pred             Eeehhhhhccc-----------------------c-----eeEEEEecccchHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            99999877653                       2     499999999 568877666553 78999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|+|.++|||||+||+|+|+.+....  .-+||+|||+|.....+..      ....+|||+|||||++...+      
T Consensus       123 l~yCH~n~IvHRDvkP~nllLASK~~~--A~vKL~~FGvAi~l~~g~~------~~G~~GtP~fmaPEvvrkdp------  188 (355)
T KOG0033|consen  123 LAYCHSNGIVHRDLKPENLLLASKAKG--AAVKLADFGLAIEVNDGEA------WHGFAGTPGYLSPEVLKKDP------  188 (355)
T ss_pred             HHHHHhcCceeccCChhheeeeeccCC--CceeecccceEEEeCCccc------cccccCCCcccCHHHhhcCC------
Confidence            999999999999999999999877443  4699999999988774321      22678999999999999887      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCccccccccccc------cccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHH
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV------NALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVC  506 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~------~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L  506 (588)
                      ++..+||||.|||||-|+.|++||+++.....++.      ...++.++.+++++++||++||..||.+|+|+.|+++  
T Consensus       189 y~kpvDiW~cGViLfiLL~G~~PF~~~~~~rlye~I~~g~yd~~~~~w~~is~~Ak~LvrrML~~dP~kRIta~EAL~--  266 (355)
T KOG0033|consen  189 YSKPVDIWACGVILYILLVGYPPFWDEDQHRLYEQIKAGAYDYPSPEWDTVTPEAKSLIRRMLTVNPKKRITADEALK--  266 (355)
T ss_pred             CCCcchhhhhhHHHHHHHhCCCCCCCccHHHHHHHHhccccCCCCcccCcCCHHHHHHHHHHhccChhhhccHHHHhC--
Confidence            45679999999999999999999998533332221      2233467889999999999999999999999999999  


Q ss_pred             hhhhhcCCcccc
Q psy4039         507 QLYLWAPKHWLY  518 (588)
Q Consensus       507 ~~~~~~~h~w~~  518 (588)
                             |||+.
T Consensus       267 -------HpWi~  271 (355)
T KOG0033|consen  267 -------HPWIC  271 (355)
T ss_pred             -------Cchhc
Confidence                   99997

>KOG0580|consensus

Probab=100.00  E-value=8.7e-45  Score=345.06  Aligned_cols=259  Identities=22%  Similarity=0.338  Sum_probs=220.7

Q ss_pred             CCccccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhh
Q psy4039         188 PDVDDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSV  265 (588)
Q Consensus       188 ~~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l  265 (588)
                      .....+.+++|++++.||+|-||.||.|+.+  +..||+|++++..+           .   .....+++.+|++|...|
T Consensus        14 ~~~~~~~l~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi-----------~---~~~v~~qlrREiEIqs~L   79 (281)
T KOG0580|consen   14 RATKTWTLDDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQI-----------L---KTQVEHQLRREIEIQSHL   79 (281)
T ss_pred             ccccccchhhccccccccCCccccEeEeeeccCCcEEEEeeeeHHHH-----------H---HhcchhhhhheeEeeccc
Confidence            4556788899999999999999999999998  77999999965221           1   112456678899999987


Q ss_pred             cCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh-cCCCCHHHHH
Q psy4039         266 ENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER-CAQLSMHERV  343 (588)
Q Consensus       266 ~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~-~~~l~~~~~~  343 (588)
                          +||||+++|++|.|..                            ..|+++||. +|+|...|.+. ..++++..++
T Consensus        80 ----~hpnilrlY~~fhd~~----------------------------riyLilEya~~gel~k~L~~~~~~~f~e~~~a  127 (281)
T KOG0580|consen   80 ----RHPNILRLYGYFHDSK----------------------------RIYLILEYAPRGELYKDLQEGRMKRFDEQRAA  127 (281)
T ss_pred             ----CCccHHhhhhheeccc----------------------------eeEEEEEecCCchHHHHHHhcccccccccchh
Confidence                9999999999999854                            399999999 69999999864 3479999999


Q ss_pred             HHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHh
Q psy4039         344 LLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVAL  423 (588)
Q Consensus       344 ~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~  423 (588)
                      .++.|+|.||.|+|.++||||||||+|+|++..     +.+||+|||-+...+.+.       ..+.|||.-|.+||+..
T Consensus       128 ~Yi~q~A~Al~y~h~k~VIhRdiKpenlLlg~~-----~~lkiAdfGwsV~~p~~k-------R~tlcgt~dyl~pEmv~  195 (281)
T KOG0580|consen  128 TYIKQLANALLYCHLKRVIHRDIKPENLLLGSA-----GELKIADFGWSVHAPSNK-------RKTLCGTLDYLPPEMVE  195 (281)
T ss_pred             HHHHHHHHHHHHhccCCcccCCCCHHHhccCCC-----CCeeccCCCceeecCCCC-------ceeeecccccCCHhhcC
Confidence            999999999999999999999999999999988     899999999986654322       23689999999999998


Q ss_pred             cCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccccccc--ccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHH
Q psy4039         424 ATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVN--ALPQLNTNVPEVMRRLVAKLLENDPSDRPSAEL  501 (588)
Q Consensus       424 ~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~~--~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e  501 (588)
                      +..      .+..+|+|++|++.||++.|.+||........|...  ..-.+|..++.+++|+|.+||..+|.+|.+..|
T Consensus       196 ~~~------hd~~Vd~w~lgvl~yeflvg~ppFes~~~~etYkrI~k~~~~~p~~is~~a~dlI~~ll~~~p~~r~~l~~  269 (281)
T KOG0580|consen  196 GRG------HDKFVDLWSLGVLCYEFLVGLPPFESQSHSETYKRIRKVDLKFPSTISGGAADLISRLLVKNPIERLALTE  269 (281)
T ss_pred             CCC------ccchhhHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHccccCCcccChhHHHHHHHHhccCccccccHHH
Confidence            776      456799999999999999999999987755555432  233467889999999999999999999999999


Q ss_pred             HHHHHhhhhhcCCccccC
Q psy4039         502 AATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       502 ~l~~L~~~~~~~h~w~~~  519 (588)
                      +++         |||+..
T Consensus       270 v~~---------hpwI~a  278 (281)
T KOG0580|consen  270 VMD---------HPWIVA  278 (281)
T ss_pred             Hhh---------hHHHHh
Confidence            999         999863

>KOG0659|consensus

Probab=100.00  E-value=9.7e-44  Score=342.35  Aligned_cols=253  Identities=24%  Similarity=0.271  Sum_probs=207.6

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|...+.||+|.||+||+|++.  |+.||||+|+.......               ......+||+.|+.+    +|||
T Consensus         2 ~rY~~~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kdG---------------i~~talREIK~Lqel----~h~n   62 (318)
T KOG0659|consen    2 DRYEKLEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKDG---------------INRTALREIKLLQEL----KHPN   62 (318)
T ss_pred             chhhhhhhhcCcceEEEEEEEecCCCcEEEEEEeeccccccC---------------ccHHHHHHHHHHHHc----cCcc
Confidence            56888899999999999999997  89999999975433221               223346799999998    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      ||.++++|-...                            .+.+|+||+..+|...++++...++..++..++.++++||
T Consensus        63 Ii~LiD~F~~~~----------------------------~l~lVfEfm~tdLe~vIkd~~i~l~pa~iK~y~~m~LkGl  114 (318)
T KOG0659|consen   63 IIELIDVFPHKS----------------------------NLSLVFEFMPTDLEVVIKDKNIILSPADIKSYMLMTLKGL  114 (318)
T ss_pred             hhhhhhhccCCC----------------------------ceEEEEEeccccHHHHhcccccccCHHHHHHHHHHHHHHH
Confidence            999999986532                            4899999999999999999877899999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN  433 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~  433 (588)
                      +|||++.|+||||||.|+|++++     +.+||+|||+|+.+....... +    ..+-|..|.|||++.|...     |
T Consensus       115 ~y~H~~~IlHRDlKPnNLLis~~-----g~lKiADFGLAr~f~~p~~~~-~----~~V~TRWYRAPELLfGsr~-----Y  179 (318)
T KOG0659|consen  115 AYCHSKWILHRDLKPNNLLISSD-----GQLKIADFGLARFFGSPNRIQ-T----HQVVTRWYRAPELLFGSRQ-----Y  179 (318)
T ss_pred             HHHHhhhhhcccCCccceEEcCC-----CcEEeecccchhccCCCCccc-c----cceeeeeccChHHhccchh-----c
Confidence            99999999999999999999998     899999999999987643321 1    2367889999999987653     5


Q ss_pred             CCcCchhhHHHHHHHHhcCCCCCccccccc------------------------cccc------cccCCCCCCccHHHHH
Q psy4039         434 YSKSDAWTAGTVAYEIFGHDNPFYQSARNT------------------------DYEV------NALPQLNTNVPEVMRR  483 (588)
Q Consensus       434 ~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~------------------------~~~~------~~~~~~~~~~~~~l~~  483 (588)
                      +..+||||.|||+.||+-|.+-|.++....                        ++..      .....+...+++++.|
T Consensus       180 g~~VDmWavGCI~AELllr~P~fpG~sDidQL~~If~~LGTP~~~~WP~~~~lpdY~~~~~~P~~~~~~lf~aas~d~ld  259 (318)
T KOG0659|consen  180 GTGVDMWAVGCIFAELLLRVPFFPGDSDIDQLSKIFRALGTPTPDQWPEMTSLPDYVKIQQFPKPPLNNLFPAASSDALD  259 (318)
T ss_pred             CCcchhhhHHHHHHHHHccCCCCCCCchHHHHHHHHHHcCCCCcccCccccccccHHHHhcCCCCccccccccccHHHHH
Confidence            678999999999999999887776631110                        1110      0011123456788999


Q ss_pred             HHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccC
Q psy4039         484 LVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       484 Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~  519 (588)
                      |+.+||..||.+|++++|+++         |+||+.
T Consensus       260 Ll~~m~~ynP~~Rita~qaL~---------~~yf~~  286 (318)
T KOG0659|consen  260 LLSKMLTYNPKKRITASQALK---------HPYFKS  286 (318)
T ss_pred             HHHhhhccCchhcccHHHHhc---------chhhhc
Confidence            999999999999999999999         999984

>KOG0597|consensus

Probab=100.00  E-value=1.9e-44  Score=375.86  Aligned_cols=250  Identities=22%  Similarity=0.309  Sum_probs=208.9

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|.+.+.||+|+||+||||+.+  .+.||+|.+.+.....          +     .-+.+.+|++|++.+    +|||
T Consensus         2 e~yhv~e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~~----------k-----~l~~l~~ev~i~r~l----kHpn   62 (808)
T KOG0597|consen    2 EQYHVYEMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRNE----------K-----ELKNLRQEVRILRSL----KHPN   62 (808)
T ss_pred             cchhHHHHhcCCccceeeecccccceeEEEEEEehhcCCch----------H-----HHHHHHHHHHHHHhc----CCcc
Confidence            67888999999999999999988  6789999995432111          1     123456799999998    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      ||.++++|+...                            .+|+|+||+-|+|..+|...+ .++|+++..|+.|++.||
T Consensus        63 iv~m~esfEt~~----------------------------~~~vVte~a~g~L~~il~~d~-~lpEe~v~~~a~~LVsaL  113 (808)
T KOG0597|consen   63 IVEMLESFETSA----------------------------HLWVVTEYAVGDLFTILEQDG-KLPEEQVRAIAYDLVSAL  113 (808)
T ss_pred             hhhHHHhhcccc----------------------------eEEEEehhhhhhHHHHHHhcc-CCCHHHHHHHHHHHHHHH
Confidence            999999998743                            599999999889999998765 999999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN  433 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~  433 (588)
                      .|||+.+|+|||+||.|||++..     +.+|+||||+|+....+..+     .+.+.|||.|||||+..++++      
T Consensus       114 ~yLhs~rilhrd~kPqniLl~~~-----~~~KlcdFg~Ar~m~~~t~v-----ltsikGtPlYmAPElv~e~py------  177 (808)
T KOG0597|consen  114 YYLHSNRILHRDMKPQNILLEKG-----GTLKLCDFGLARAMSTNTSV-----LTSIKGTPLYMAPELVEEQPY------  177 (808)
T ss_pred             HHHHhcCcccccCCcceeeecCC-----CceeechhhhhhhcccCcee-----eeeccCcccccCHHHHcCCCc------
Confidence            99999999999999999999988     89999999999987664332     235779999999999998874      


Q ss_pred             CCcCchhhHHHHHHHHhcCCCCCccccccccccc--cccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhh
Q psy4039         434 YSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV--NALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLW  511 (588)
Q Consensus       434 ~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~--~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~  511 (588)
                      +..+|+||+|||+|||++|++||+........+.  ......|...+.++..++..+|.+||.+|.+..+++.       
T Consensus       178 d~~sDlWslGcilYE~~~G~PPF~a~si~~Lv~~I~~d~v~~p~~~S~~f~nfl~gLL~kdP~~RltW~~Ll~-------  250 (808)
T KOG0597|consen  178 DHTSDLWSLGCILYELYVGQPPFYARSITQLVKSILKDPVKPPSTASSSFVNFLQGLLIKDPAQRLTWTDLLG-------  250 (808)
T ss_pred             cchhhHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCCCCCcccccHHHHHHHHHHhhcChhhcccHHHHhc-------
Confidence            4569999999999999999999987533222211  1222334578999999999999999999999999777       


Q ss_pred             cCCcccc
Q psy4039         512 APKHWLY  518 (588)
Q Consensus       512 ~~h~w~~  518 (588)
                        |||.+
T Consensus       251 --HpF~k  255 (808)
T KOG0597|consen  251 --HPFWK  255 (808)
T ss_pred             --ChHHh
Confidence              77766

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=100.00  E-value=2.1e-43  Score=369.60  Aligned_cols=257  Identities=24%  Similarity=0.347  Sum_probs=209.8

Q ss_pred             CCccccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhh
Q psy4039         188 PDVDDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSV  265 (588)
Q Consensus       188 ~~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l  265 (588)
                      .....+.+++|++.+.||+|+||.||+|.+.  ++.||||++......           .   ....+.+.+|+.+++.+
T Consensus        10 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~-----------~---~~~~~~~~~E~~~l~~l   75 (329)
T PTZ00263         10 PDTSSWKLSDFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREIL-----------K---MKQVQHVAQEKSILMEL   75 (329)
T ss_pred             cccCCCCchheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHh-----------h---hhhHHHHHHHHHHHHhC
Confidence            3455667799999999999999999999997  789999998531100           0   01224466799999987


Q ss_pred             cCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHH
Q psy4039         266 ENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVL  344 (588)
Q Consensus       266 ~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~  344 (588)
                          +||||+++++++.+..                            .+|+||||+ +|+|.+++.... .+++..+..
T Consensus        76 ----~hp~iv~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~  122 (329)
T PTZ00263         76 ----SHPFIVNMMCSFQDEN----------------------------RVYFLLEFVVGGELFTHLRKAG-RFPNDVAKF  122 (329)
T ss_pred             ----CCCCCCcEEEEEEcCC----------------------------EEEEEEcCCCCChHHHHHHHcC-CCCHHHHHH
Confidence                9999999999987632                            499999999 679999998764 789999999


Q ss_pred             HHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhc
Q psy4039         345 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALA  424 (588)
Q Consensus       345 i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~  424 (588)
                      ++.|++.||.|||++||+||||||+|||++.+     +.+||+|||+++......        ....||+.|+|||++.+
T Consensus       123 ~~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~-----~~~kl~Dfg~~~~~~~~~--------~~~~gt~~y~aPE~~~~  189 (329)
T PTZ00263        123 YHAELVLAFEYLHSKDIIYRDLKPENLLLDNK-----GHVKVTDFGFAKKVPDRT--------FTLCGTPEYLAPEVIQS  189 (329)
T ss_pred             HHHHHHHHHHHHHHCCeeecCCCHHHEEECCC-----CCEEEeeccCceEcCCCc--------ceecCChhhcCHHHHcC
Confidence            99999999999999999999999999999987     899999999997654321        13579999999999976


Q ss_pred             CCCCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccccc--ccccCCCCCCccHHHHHHHHHhhhhCCCCCCC----
Q psy4039         425 TPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVAKLLENDPSDRPS----  498 (588)
Q Consensus       425 ~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~--~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps----  498 (588)
                      ..      ++.++|||||||++|||++|..||.+......+.  ......++..++..+++||.+||+.||.+||+    
T Consensus       190 ~~------~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~  263 (329)
T PTZ00263        190 KG------HGKAVDWWTMGVLLYEFIAGYPPFFDDTPFRIYEKILAGRLKFPNWFDGRARDLVKGLLQTDHTKRLGTLKG  263 (329)
T ss_pred             CC------CCCcceeechHHHHHHHHcCCCCCCCCCHHHHHHHHhcCCcCCCCCCCHHHHHHHHHHhhcCHHHcCCCCCC
Confidence            65      4578999999999999999999997643222111  12233456678999999999999999999997    


Q ss_pred             -HHHHHHHHhhhhhcCCccccC
Q psy4039         499 -AELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       499 -~~e~l~~L~~~~~~~h~w~~~  519 (588)
                       ++++++         |||+..
T Consensus       264 ~~~~ll~---------hp~f~~  276 (329)
T PTZ00263        264 GVADVKN---------HPYFHG  276 (329)
T ss_pred             CHHHHhc---------CCccCC
Confidence             789888         999974

>KOG0663|consensus

Probab=100.00  E-value=8.7e-44  Score=351.92  Aligned_cols=268  Identities=26%  Similarity=0.338  Sum_probs=213.8

Q ss_pred             cccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCC
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPP  270 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~  270 (588)
                      -.+++|+..+.|++|+||.||+|+++  +..||+|+++-..            .++..+..   ..+||.+|.++    +
T Consensus        73 rsv~efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmek------------ek~GFPIt---sLREIniLl~~----~  133 (419)
T KOG0663|consen   73 RSVEEFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEK------------EKEGFPIT---SLREINILLKA----R  133 (419)
T ss_pred             ccHHHHHHHhhcccCcceeEEEeccCCcceeEEeeeccccc------------ccCCCcch---hHHHHHHHHhc----C
Confidence            34588999999999999999999998  7899999985211            12222222   35799999998    8


Q ss_pred             CCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy4039         271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLL  350 (588)
Q Consensus       271 HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~  350 (588)
                      |||||.+-++.....                          ...+|+|||||+.+|...+..-..++...++.-++.|++
T Consensus       134 H~NIV~vkEVVvG~~--------------------------~d~iy~VMe~~EhDLksl~d~m~q~F~~~evK~L~~QlL  187 (419)
T KOG0663|consen  134 HPNIVEVKEVVVGSN--------------------------MDKIYIVMEYVEHDLKSLMETMKQPFLPGEVKTLMLQLL  187 (419)
T ss_pred             CCCeeeeEEEEeccc--------------------------cceeeeeHHHHHhhHHHHHHhccCCCchHHHHHHHHHHH
Confidence            999999998876521                          235999999999999999998777999999999999999


Q ss_pred             HHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCcc
Q psy4039         351 EGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFS  430 (588)
Q Consensus       351 ~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~  430 (588)
                      +|+.|||.+.|+|||||++|+|+...     +.+||+|||+||.++.... +++    ..+-|.+|.|||++.+.+.   
T Consensus       188 ~glk~lH~~wilHRDLK~SNLLm~~~-----G~lKiaDFGLAR~ygsp~k-~~T----~lVVTLWYRaPELLLG~~t---  254 (419)
T KOG0663|consen  188 RGLKHLHDNWILHRDLKTSNLLLSHK-----GILKIADFGLAREYGSPLK-PYT----PLVVTLWYRAPELLLGAKT---  254 (419)
T ss_pred             HHHHHHhhceeEecccchhheeeccC-----CcEEecccchhhhhcCCcc-cCc----ceEEEeeecCHHHhcCCcc---
Confidence            99999999999999999999999988     8999999999999877532 233    5678999999999998763   


Q ss_pred             CCCCCcCchhhHHHHHHHHhcCCCCCccccccccc----------cccccC-----------------------CCCC-C
Q psy4039         431 FVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY----------EVNALP-----------------------QLNT-N  476 (588)
Q Consensus       431 ~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~----------~~~~~~-----------------------~~~~-~  476 (588)
                        |+++.|+||+|||+.||+++++.|.+.......          ....+|                       .++. .
T Consensus       255 --yst~iDMWSvGCI~aE~l~~kPlf~G~sE~dQl~~If~llGtPte~iwpg~~~lp~~k~~~f~~~pyn~lr~kF~~~~  332 (419)
T KOG0663|consen  255 --YSTAVDMWSVGCIFAELLTQKPLFPGKSEIDQLDKIFKLLGTPSEAIWPGYSELPAVKKMTFSEHPYNNLRKKFGALS  332 (419)
T ss_pred             --cCcchhhhhHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCccccCCCccccchhhccccCCCCchhhhhhccccc
Confidence              668899999999999999999999873111100          000111                       1111 2


Q ss_pred             ccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccC-CCCChhHHHH
Q psy4039         477 VPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYG-ATPSHNEIMQ  529 (588)
Q Consensus       477 ~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~-~~~~~~~~~~  529 (588)
                      +++...+|+..+|..||.+|.|++++++         |+|+.+ ..|.+.+.+.
T Consensus       333 lse~g~~Lln~llt~dP~kR~tA~~~L~---------h~~F~e~P~p~~P~~~P  377 (419)
T KOG0663|consen  333 LSEQGFDLLNKLLTYDPGKRITAEDGLK---------HEYFRETPLPIDPSMFP  377 (419)
T ss_pred             cchhHHHHHHHHhccCccccccHHHhhc---------ccccccCCCCCChhhcC
Confidence            5688899999999999999999999999         999984 3444444433

>KOG4721|consensus

Probab=100.00  E-value=9.5e-44  Score=370.28  Aligned_cols=248  Identities=22%  Similarity=0.350  Sum_probs=212.6

Q ss_pred             CCccccccCCeEEeeeecccCceeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcC
Q psy4039         188 PDVDDVKVDDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVEN  267 (588)
Q Consensus       188 ~~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~  267 (588)
                      .+.|++.++....++-||.|+.|.||+|++.++.||||+++.                        .-..+|+-|++|  
T Consensus       116 ~e~WeiPFe~IsELeWlGSGaQGAVF~Grl~netVAVKKV~e------------------------lkETdIKHLRkL--  169 (904)
T KOG4721|consen  116 EELWEIPFEEISELEWLGSGAQGAVFLGRLHNETVAVKKVRE------------------------LKETDIKHLRKL--  169 (904)
T ss_pred             hhhccCCHHHhhhhhhhccCcccceeeeeccCceehhHHHhh------------------------hhhhhHHHHHhc--
Confidence            567999999999999999999999999999999999999731                        112367778887  


Q ss_pred             CCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHH
Q psy4039         268 LPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLF  346 (588)
Q Consensus       268 l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~  346 (588)
                        +|||||.+.|+|+...                            .++|||||| .|-|...|+..+ .++......+.
T Consensus       170 --kH~NII~FkGVCtqsP----------------------------cyCIiMEfCa~GqL~~VLka~~-~itp~llv~Ws  218 (904)
T KOG4721|consen  170 --KHPNIITFKGVCTQSP----------------------------CYCIIMEFCAQGQLYEVLKAGR-PITPSLLVDWS  218 (904)
T ss_pred             --cCcceeeEeeeecCCc----------------------------eeEEeeeccccccHHHHHhccC-ccCHHHHHHHH
Confidence              9999999999998732                            489999999 699999998765 88999999999


Q ss_pred             HHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCC
Q psy4039         347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP  426 (588)
Q Consensus       347 ~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~  426 (588)
                      .+||.|+.|||.+.|||||||+-||||..+     ..+||+|||.++.....      +....++||..|||||++...+
T Consensus       219 k~IA~GM~YLH~hKIIHRDLKSPNiLIs~~-----d~VKIsDFGTS~e~~~~------STkMSFaGTVaWMAPEvIrneP  287 (904)
T KOG4721|consen  219 KGIAGGMNYLHLHKIIHRDLKSPNILISYD-----DVVKISDFGTSKELSDK------STKMSFAGTVAWMAPEVIRNEP  287 (904)
T ss_pred             HHhhhhhHHHHHhhHhhhccCCCceEeecc-----ceEEeccccchHhhhhh------hhhhhhhhhHhhhCHHHhhcCC
Confidence            999999999999999999999999999988     68999999999876542      1122689999999999999887


Q ss_pred             CCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccc----cccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHH
Q psy4039         427 GLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY----EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA  502 (588)
Q Consensus       427 ~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~----~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~  502 (588)
                            .++|+|||||||+|||||||..||.+-.....+    .....-+.|..||+.++-||++||+..|..||++.++
T Consensus       288 ------csEKVDIwSfGVVLWEmLT~EiPYkdVdssAIIwGVGsNsL~LpvPstcP~GfklL~Kqcw~sKpRNRPSFrqi  361 (904)
T KOG4721|consen  288 ------CSEKVDIWSFGVVLWEMLTGEIPYKDVDSSAIIWGVGSNSLHLPVPSTCPDGFKLLLKQCWNSKPRNRPSFRQI  361 (904)
T ss_pred             ------cccccceehhHHHHHHHHhcCCCccccchheeEEeccCCcccccCcccCchHHHHHHHHHHhcCCCCCccHHHH
Confidence                  568999999999999999999999773222222    2233345678999999999999999999999999999


Q ss_pred             HHHHhhh
Q psy4039         503 ATVCQLY  509 (588)
Q Consensus       503 l~~L~~~  509 (588)
                      +.+|+.+
T Consensus       362 l~HldIa  368 (904)
T KOG4721|consen  362 LLHLDIA  368 (904)
T ss_pred             HHHHhhc
Confidence            9977754

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=100.00  E-value=1.5e-42  Score=355.93  Aligned_cols=252  Identities=22%  Similarity=0.287  Sum_probs=199.9

Q ss_pred             ccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCC
Q psy4039         194 KVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPH  271 (588)
Q Consensus       194 ~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~H  271 (588)
                      .+++|++.+.||.|+||.||+|.+.  +..||+|.+......                .....+.+|+.+++.+    +|
T Consensus         3 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~----------------~~~~~~~~E~~~l~~l----~h   62 (288)
T cd07871           3 KLETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEE----------------GAPCTAIREVSLLKNL----KH   62 (288)
T ss_pred             ccccceEeeEEecCCCEEEEEEEECCCCCEEEEEEecccccC----------------CcchhHHHHHHHHHhC----CC
Confidence            3588999999999999999999986  789999998532111                0123445799999887    99


Q ss_pred             CceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4039         272 PNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLE  351 (588)
Q Consensus       272 pNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~  351 (588)
                      |||+++++++.+..                            ..++||||+.|+|.+++...+..+++..+..++.||+.
T Consensus        63 ~niv~~~~~~~~~~----------------------------~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~qi~~  114 (288)
T cd07871          63 ANIVTLHDIIHTER----------------------------CLTLVFEYLDSDLKQYLDNCGNLMSMHNVKIFMFQLLR  114 (288)
T ss_pred             CCEeeEEEEEcCCC----------------------------eEEEEEeCCCcCHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence            99999999987531                            48999999999999999876656899999999999999


Q ss_pred             HHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccC
Q psy4039         352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF  431 (588)
Q Consensus       352 gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~  431 (588)
                      ||+|||++||+||||||+|||++.+     +.+||+|||+++.......     ......||+.|+|||++.+...    
T Consensus       115 aL~~LH~~~ivH~dlkp~Nil~~~~-----~~~kl~DfG~~~~~~~~~~-----~~~~~~~~~~y~aPE~~~~~~~----  180 (288)
T cd07871         115 GLSYCHKRKILHRDLKPQNLLINEK-----GELKLADFGLARAKSVPTK-----TYSNEVVTLWYRPPDVLLGSTE----  180 (288)
T ss_pred             HHHHHHhCCcccCCCCHHHEEECCC-----CCEEECcCcceeeccCCCc-----cccCceecccccChHHhcCCcc----
Confidence            9999999999999999999999987     7899999999976533211     1123568999999999865321    


Q ss_pred             CCCCcCchhhHHHHHHHHhcCCCCCccccccccc------------------------cccccC--------CCCCCccH
Q psy4039         432 VNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY------------------------EVNALP--------QLNTNVPE  479 (588)
Q Consensus       432 ~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~------------------------~~~~~~--------~~~~~~~~  479 (588)
                       ++.++||||+||++|||++|++||.+.......                        .....+        .....+++
T Consensus       181 -~~~~~DiwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (288)
T cd07871         181 -YSTPIDMWGVGCILYEMATGRPMFPGSTVKEELHLIFRLLGTPTEETWPGITSNEEFRSYLFPQYRAQPLINHAPRLDT  259 (288)
T ss_pred             -cCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHHhhccccchhhhccccCccCCCchHHhCCCCCH
Confidence             456899999999999999999999653211000                        000000        01234678


Q ss_pred             HHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccc
Q psy4039         480 VMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWL  517 (588)
Q Consensus       480 ~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~  517 (588)
                      ++++|+.+||+.||.+|||++|+++         ||||
T Consensus       260 ~~~dll~~mL~~dp~~R~t~~~~l~---------hp~f  288 (288)
T cd07871         260 DGIDLLSSLLLYETKSRISAEAALR---------HSYF  288 (288)
T ss_pred             HHHHHHHHhcCcCcccCCCHHHHhc---------CCCC
Confidence            8999999999999999999999999         9996

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>KOG0032|consensus

Probab=100.00  E-value=1.3e-42  Score=367.09  Aligned_cols=256  Identities=24%  Similarity=0.398  Sum_probs=214.0

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      +.|++++.||+|.||.||+|+.+  |+.+|+|++.+......              .....+.+|+.||+++   ..|||
T Consensus        35 ~~Y~l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~--------------~~~~~v~~Ev~il~~l---~~hpn   97 (382)
T KOG0032|consen   35 EKYELGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGK--------------EDREDVRREVAILQQL---SGHPN   97 (382)
T ss_pred             ccEEehhhhCCCCceEEEEEEecCCCceeEEEEeehhhcccc--------------ccHHHHHHHHHHHHhc---cCCCC
Confidence            67999999999999999999998  88999999965332211              0335678899999998   34999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      ||+++++|++..                            .+++|||++ +|.|.+.+...  .+++..+..++.|++.+
T Consensus        98 iv~l~~~~e~~~----------------------------~~~lvmEL~~GGeLfd~i~~~--~~sE~da~~~~~~il~a  147 (382)
T KOG0032|consen   98 IVQLKDAFEDPD----------------------------SVYLVMELCEGGELFDRIVKK--HYSERDAAGIIRQILEA  147 (382)
T ss_pred             EEEEEEEEEcCC----------------------------eEEEEEEecCCchHHHHHHHc--cCCHHHHHHHHHHHHHH
Confidence            999999999843                            599999999 68999999876  49999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      +.|||+.||+||||||+|+|+.....+. +.+|++|||+|.....+...      ...+||+.|+|||++.+.+      
T Consensus       148 v~~lH~~gvvHrDlKpEN~L~~~~~~~~-~~ik~~DFGla~~~~~~~~~------~~~~Gtp~y~APEvl~~~~------  214 (382)
T KOG0032|consen  148 VKYLHSLGVVHRDLKPENLLLASKDEGS-GRIKLIDFGLAKFIKPGERL------HTIVGTPEYVAPEVLGGRP------  214 (382)
T ss_pred             HHHHHhCCceeccCCHHHeeeccccCCC-CcEEEeeCCCceEccCCceE------eeecCCccccCchhhcCCC------
Confidence            9999999999999999999998774333 58999999999887652221      2688999999999998655      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcccccccccc------ccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHH
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE------VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVC  506 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~------~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L  506 (588)
                      ++..+||||+||++|.|++|.+||.+........      .....+.+..++..++++|.+||..||.+|+|+.++++  
T Consensus       215 y~~~~DiWS~Gvi~yiLL~G~~PF~~~~~~~~~~~i~~~~~~f~~~~w~~is~~akd~i~~ll~~dp~~R~ta~~~L~--  292 (382)
T KOG0032|consen  215 YGDEVDVWSIGVILYILLSGVPPFWGETEFEIFLAILRGDFDFTSEPWDDISESAKDFIRKLLEFDPRKRLTAAQALQ--  292 (382)
T ss_pred             CCcccchhHHHHHHHHHhhCCCCCcCCChhHHHHHHHcCCCCCCCCCccccCHHHHHHHHHhcccCcccCCCHHHHhc--
Confidence            5678999999999999999999998864322221      12233456788999999999999999999999999999  


Q ss_pred             hhhhhcCCccccCC
Q psy4039         507 QLYLWAPKHWLYGA  520 (588)
Q Consensus       507 ~~~~~~~h~w~~~~  520 (588)
                             |||++..
T Consensus       293 -------HpWi~~~  299 (382)
T KOG0032|consen  293 -------HPWIKSI  299 (382)
T ss_pred             -------CccccCC
Confidence                   9999853

>KOG0660|consensus

Probab=100.00  E-value=2.1e-43  Score=354.27  Aligned_cols=258  Identities=22%  Similarity=0.301  Sum_probs=206.0

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ..|...+.||+|+||.|+.+.++  |..||||++.+            .|....   ..++-.+|+++|+++    +|+|
T Consensus        22 ~~y~~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~------------~F~~~~---~akRtlRElklLr~~----~HeN   82 (359)
T KOG0660|consen   22 RYYVLIEPIGRGAYGVVCSAKDKRTGEKVAIKKILN------------PFENQI---DAKRTLRELKLLRHL----RHEN   82 (359)
T ss_pred             ceecccccccCcceeeEEEEEEcCCCCEeehhhhhh------------hhhchH---HHHHHHHHHHHHHHh----cCCC
Confidence            55666799999999999999997  89999999841            122221   334456799999998    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      ||.+++++...                       .......+|+|+|+|+.+|.+.|+.+. .|+...+..+++|+++||
T Consensus        83 Ii~l~di~~p~-----------------------~~~~f~DvYiV~elMetDL~~iik~~~-~L~d~H~q~f~YQiLrgL  138 (359)
T KOG0660|consen   83 IIGLLDIFRPP-----------------------SRDKFNDVYLVFELMETDLHQIIKSQQ-DLTDDHAQYFLYQILRGL  138 (359)
T ss_pred             cceEEeecccc-----------------------cccccceeEEehhHHhhHHHHHHHcCc-cccHHHHHHHHHHHHHhc
Confidence            99999998752                       112233599999999999999998873 599999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN  433 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~  433 (588)
                      .|+|+.+|+||||||+|+|++.+     ..+||+|||+||.....   ......+..+.|.+|.|||++.....     +
T Consensus       139 KyiHSAnViHRDLKPsNll~n~~-----c~lKI~DFGLAR~~~~~---~~~~~mTeYVaTRWYRAPElll~~~~-----Y  205 (359)
T KOG0660|consen  139 KYIHSANVIHRDLKPSNLLLNAD-----CDLKICDFGLARYLDKF---FEDGFMTEYVATRWYRAPELLLNSSE-----Y  205 (359)
T ss_pred             chhhcccccccccchhheeeccC-----CCEEeccccceeecccc---CcccchhcceeeeeecCHHHHhcccc-----c
Confidence            99999999999999999999988     78999999999987653   22233346788999999999965432     5


Q ss_pred             CCcCchhhHHHHHHHHhcCCCCCccccccc--------------------------ccc--ccccC-----CCCCCccHH
Q psy4039         434 YSKSDAWTAGTVAYEIFGHDNPFYQSARNT--------------------------DYE--VNALP-----QLNTNVPEV  480 (588)
Q Consensus       434 ~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~--------------------------~~~--~~~~~-----~~~~~~~~~  480 (588)
                      +.+.||||+|||+.||++|++-|.+.....                          .+.  ....+     .+....++.
T Consensus       206 t~aiDiWSvGCI~AEmL~gkplFpG~d~v~Ql~lI~~~lGtP~~e~l~~i~s~~ar~yi~slp~~p~~~f~~~fp~a~p~  285 (359)
T KOG0660|consen  206 TKAIDIWSVGCILAEMLTGKPLFPGKDYVHQLQLILELLGTPSEEDLQKIRSEKARPYIKSLPQIPKQPFSSIFPNANPL  285 (359)
T ss_pred             cchhhhhhhhHHHHHHHcCCCCCCCCchHHHHHHHHHhcCCCCHHHHHHhccHHHHHHHHhCCCCCCCCHHHHcCCCCHH
Confidence            567899999999999999999998731000                          000  01111     122467899


Q ss_pred             HHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCcccc
Q psy4039         481 MRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLY  518 (588)
Q Consensus       481 l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~  518 (588)
                      +.+|+.+||+.||.+|+|++|+++         |||+.
T Consensus       286 AidLlekmL~fdP~kRita~eAL~---------hPYl~  314 (359)
T KOG0660|consen  286 AIDLLEKMLVFDPKKRITAEEALA---------HPYLA  314 (359)
T ss_pred             HHHHHHHHhccCccccCCHHHHhc---------Chhhh
Confidence            999999999999999999999999         99998

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.9e-43  Score=360.92  Aligned_cols=249  Identities=25%  Similarity=0.352  Sum_probs=203.0

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||.||+|.+.  ++.||||++.......              ....+.+.+|+.+++.+    +|||
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~--------------~~~~~~~~~E~~~l~~l----~hp~   62 (291)
T cd05612           1 DDLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIR--------------LKQEQHVHNEKRVLKEV----SHPF   62 (291)
T ss_pred             CCceeeeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhh--------------hHHHHHHHHHHHHHHhC----CCCc
Confidence            47899999999999999999997  8899999985311100              00223466799999987    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++++.+.                            ..+++||||+ +|+|.+++...+ .+++..+..++.|++.|
T Consensus        63 iv~~~~~~~~~----------------------------~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~qi~~~  113 (291)
T cd05612          63 IIRLFWTEHDQ----------------------------RFLYMLMEYVPGGELFSYLRNSG-RFSNSTGLFYASEIVCA  113 (291)
T ss_pred             HhhhHhhhccC----------------------------CeEEEEEeCCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence            99999887653                            2499999999 689999998764 79999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |+|||++||+||||||+|||++.+     +.+||+|||+++......        ...+||+.|+|||++.+..      
T Consensus       114 l~~lH~~~i~H~dlkp~NIli~~~-----~~~kl~Dfg~~~~~~~~~--------~~~~gt~~y~aPE~~~~~~------  174 (291)
T cd05612         114 LEYLHSKEIVYRDLKPENILLDKE-----GHIKLTDFGFAKKLRDRT--------WTLCGTPEYLAPEVIQSKG------  174 (291)
T ss_pred             HHHHHHCCeeecCCCHHHeEECCC-----CCEEEEecCcchhccCCc--------ccccCChhhcCHHHHcCCC------
Confidence            999999999999999999999877     789999999997654321        1356999999999997654      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcccccccccc--ccccCCCCCCccHHHHHHHHHhhhhCCCCCCC-----HHHHHHH
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVAKLLENDPSDRPS-----AELAATV  505 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~--~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps-----~~e~l~~  505 (588)
                      ++.++|||||||++|||++|+.||.+......+.  ......++..+++.+++||++||+.||.+||+     ++++++ 
T Consensus       175 ~~~~~DiwSlG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~-  253 (291)
T cd05612         175 HNKAVDWWALGILIYEMLVGYPPFFDDNPFGIYEKILAGKLEFPRHLDLYAKDLIKKLLVVDRTRRLGNMKNGADDVKN-  253 (291)
T ss_pred             CCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCcCCCccCCHHHHHHHHHHcCCCHHHccCCccCCHHHHhc-
Confidence            4578999999999999999999997743222111  11223456678999999999999999999995     999888 


Q ss_pred             HhhhhhcCCccccC
Q psy4039         506 CQLYLWAPKHWLYG  519 (588)
Q Consensus       506 L~~~~~~~h~w~~~  519 (588)
                              |||+..
T Consensus       254 --------h~~~~~  259 (291)
T cd05612         254 --------HRWFKS  259 (291)
T ss_pred             --------CccccC
Confidence                    999963

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>KOG0611|consensus

Probab=100.00  E-value=1.2e-43  Score=357.13  Aligned_cols=277  Identities=24%  Similarity=0.329  Sum_probs=225.5

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      .+|++.+.||+|+||.|-+|+..  |+.||||.|++..+.+..              ....+.+||+||..|    +|||
T Consensus        53 HRyE~~etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeq--------------DlvhIRREIeIMSsL----NHPh  114 (668)
T KOG0611|consen   53 HRYEITETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQ--------------DLVHIRREIEIMSSL----NHPH  114 (668)
T ss_pred             hHHHHHHHhcCCcccceeehhhccCCcEeehhhhhhhhcccHH--------------HHHHHHHHHHHHhhc----CCCc
Confidence            57999999999999999999885  999999999765443321              223356799999998    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++|++|+..+                            .+.+||||. +|.|.+|+.+++ .|++.++..+++||+.|
T Consensus       115 II~IyEVFENkd----------------------------KIvivMEYaS~GeLYDYiSer~-~LsErEaRhfFRQIvSA  165 (668)
T KOG0611|consen  115 IIQIYEVFENKD----------------------------KIVIVMEYASGGELYDYISERG-SLSEREARHFFRQIVSA  165 (668)
T ss_pred             eeehhhhhcCCc----------------------------eEEEEEEecCCccHHHHHHHhc-cccHHHHHHHHHHHHHH
Confidence            999999998743                            499999999 799999999886 99999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      +.|+|.++++|||||.+|||+|.+     +++||+|||++..+..+.-.      .++||+|-|.+||++.+.++     
T Consensus       166 VhYCHknrVvHRDLKLENILLD~N-----~NiKIADFGLSNly~~~kfL------qTFCGSPLYASPEIvNG~PY-----  229 (668)
T KOG0611|consen  166 VHYCHKNRVVHRDLKLENILLDQN-----NNIKIADFGLSNLYADKKFL------QTFCGSPLYASPEIVNGTPY-----  229 (668)
T ss_pred             HHHHhhccceecccchhheeecCC-----CCeeeeccchhhhhccccHH------HHhcCCcccCCccccCCCCC-----
Confidence            999999999999999999999998     89999999999877664333      27899999999999999884     


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCccccccccccccccCCC-CCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhh
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQL-NTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLW  511 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~~~~~~~-~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~  511 (588)
                      -++.+|-||+||+||.|+.|..||.+............... .+.-|.++.-||+.||..||++|-|++++..       
T Consensus       230 ~GPEVDsWsLGvLLYtLVyGtMPFDG~Dhk~lvrQIs~GaYrEP~~PSdA~gLIRwmLmVNP~RRATieDiAs-------  302 (668)
T KOG0611|consen  230 KGPEVDSWSLGVLLYTLVYGTMPFDGRDHKRLVRQISRGAYREPETPSDASGLIRWMLMVNPERRATIEDIAS-------  302 (668)
T ss_pred             CCCccchhhHHHHHHHHhhcccccCCchHHHHHHHhhcccccCCCCCchHHHHHHHHHhcCcccchhHHHHhh-------
Confidence            35679999999999999999999988432222221111111 1235677899999999999999999999999       


Q ss_pred             cCCcccc---------------CCCCChhHHHHHHHhhhccccccCcc
Q psy4039         512 APKHWLY---------------GATPSHNEIMQWLLTLTTKVLCTGVS  544 (588)
Q Consensus       512 ~~h~w~~---------------~~~~~~~~~~~~l~~~~~~~~~~~~~  544 (588)
                        |.|+.               ...|....+.+|....++-++.....
T Consensus       303 --HWWvNwgy~~~V~~~ea~h~~~~P~~~~m~dw~~Rs~~~~~~~~Ak  348 (668)
T KOG0611|consen  303 --HWWVNWGYNMPVIQEEAQHIDHTPGSDSMADWTERSETMIVQDLAK  348 (668)
T ss_pred             --hheeecccccccccccccccCCCCcchhhhHHhhccccchhhhhhh
Confidence              88876               23455566777887766665555443

>KOG0193|consensus

Probab=100.00  E-value=2.3e-43  Score=372.02  Aligned_cols=265  Identities=22%  Similarity=0.284  Sum_probs=213.7

Q ss_pred             CCCccccccCCeEEeeeecccCceeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhc
Q psy4039         187 LPDVDDVKVDDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVE  266 (588)
Q Consensus       187 ~~~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~  266 (588)
                      ....|++..+++.+++.||+|+||+||+|.|-| +||||++.-.....               ...+.|.+|+.++++. 
T Consensus       383 s~~~WeIp~~ev~l~~rIGsGsFGtV~Rg~whG-dVAVK~Lnv~~pt~---------------~qlqaFKnEVa~lkkT-  445 (678)
T KOG0193|consen  383 SLEEWEIPPEEVLLGERIGSGSFGTVYRGRWHG-DVAVKLLNVDDPTP---------------EQLQAFKNEVAVLKKT-  445 (678)
T ss_pred             cccccccCHHHhhccceeccccccceeeccccc-ceEEEEEecCCCCH---------------HHHHHHHHHHHHHhhc-
Confidence            458899999999999999999999999999975 79999995322211               1345577789999887 


Q ss_pred             CCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCC-cHHHHHHHhcCCCCHHHHHHH
Q psy4039         267 NLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNT-DLRNYLRERCAQLSMHERVLL  345 (588)
Q Consensus       267 ~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~g-sL~~~L~~~~~~l~~~~~~~i  345 (588)
                         +|.||+-+.|+|..+                             .+.||+.+|+| +|..+|+....+|++.+.+.|
T Consensus       446 ---RH~NIlLFMG~~~~p-----------------------------~~AIiTqwCeGsSLY~hlHv~etkfdm~~~idI  493 (678)
T KOG0193|consen  446 ---RHENILLFMGACMNP-----------------------------PLAIITQWCEGSSLYTHLHVQETKFDMNTTIDI  493 (678)
T ss_pred             ---chhhheeeehhhcCC-----------------------------ceeeeehhccCchhhhhccchhhhhhHHHHHHH
Confidence               999999999998763                             26899999965 899999988779999999999


Q ss_pred             HHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcC
Q psy4039         346 FTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALAT  425 (588)
Q Consensus       346 ~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~  425 (588)
                      ++|+++|+.|||.++|||||||+.||+++++     +.|||+|||++..-..-.   .........|...|||||++..+
T Consensus       494 AqQiaqGM~YLHAK~IIHrDLKSnNIFl~~~-----~kVkIgDFGLatvk~~w~---g~~q~~qp~gsilwmAPEvIRmq  565 (678)
T KOG0193|consen  494 AQQIAQGMDYLHAKNIIHRDLKSNNIFLHED-----LKVKIGDFGLATVKTRWS---GEQQLEQPHGSLLWMAPEVIRMQ  565 (678)
T ss_pred             HHHHHHhhhhhhhhhhhhhhccccceEEccC-----CcEEEecccceeeeeeec---cccccCCCccchhhhcHHHHhhc
Confidence            9999999999999999999999999999988     899999999997633210   01111234588999999999865


Q ss_pred             CCCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccccccccc----C---CCCCCccHHHHHHHHHhhhhCCCCCCC
Q psy4039         426 PGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNAL----P---QLNTNVPEVMRRLVAKLLENDPSDRPS  498 (588)
Q Consensus       426 ~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~~~~----~---~~~~~~~~~l~~Li~~~L~~dP~~Rps  498 (588)
                      ..   ..++..+|||||||++|||+||..||........+-....    +   ....+++.++++|+..||..++++||.
T Consensus       566 d~---nPfS~qSDVYaFGiV~YELltg~lPysi~~~dqIifmVGrG~l~pd~s~~~s~~pk~mk~Ll~~C~~~~~~eRP~  642 (678)
T KOG0193|consen  566 DD---NPFSFQSDVYAFGIVWYELLTGELPYSIQNRDQIIFMVGRGYLMPDLSKIRSNCPKAMKRLLSDCWKFDREERPL  642 (678)
T ss_pred             cc---CCCCcccchhhhhHHHHHHHhCcCCcCCCChhheEEEecccccCccchhhhccCHHHHHHHHHHHHhcCcccCcc
Confidence            42   1256789999999999999999999986543333221111    1   233578899999999999999999999


Q ss_pred             HHHHHHHHhhhhh
Q psy4039         499 AELAATVCQLYLW  511 (588)
Q Consensus       499 ~~e~l~~L~~~~~  511 (588)
                      +.+++..|+..+-
T Consensus       643 F~~il~~l~~l~~  655 (678)
T KOG0193|consen  643 FPQLLSKLEELLP  655 (678)
T ss_pred             HHHHHHHHHHhhh
Confidence            9999997776553

>KOG0694|consensus

Probab=100.00  E-value=3.4e-43  Score=376.23  Aligned_cols=256  Identities=21%  Similarity=0.316  Sum_probs=211.6

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCC
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENL  268 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l  268 (588)
                      ..+.+++|.+.++||+|+||+|+++..+  ++.||||++++..+-.++.              .+....|..|+...   
T Consensus       363 ~~~~l~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~--------------Ve~~~~EkrI~~la---  425 (694)
T KOG0694|consen  363 GPLTLDDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDE--------------VESLMCEKRIFELA---  425 (694)
T ss_pred             CcccccceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceecccc--------------HHHHHHHHHHHHHh---
Confidence            4788899999999999999999999998  6799999998766554431              12234577888766   


Q ss_pred             CCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHH
Q psy4039         269 PPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFT  347 (588)
Q Consensus       269 ~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~  347 (588)
                      .+||.+++|+.+|+...                            ++|.||||. +|++..+.+.  ..+++..+..++.
T Consensus       426 ~~HPFL~~L~~~fQT~~----------------------------~l~fvmey~~Ggdm~~~~~~--~~F~e~rarfyaA  475 (694)
T KOG0694|consen  426 NRHPFLVNLFSCFQTKE----------------------------HLFFVMEYVAGGDLMHHIHT--DVFSEPRARFYAA  475 (694)
T ss_pred             ccCCeEeecccccccCC----------------------------eEEEEEEecCCCcEEEEEec--ccccHHHHHHHHH
Confidence            47999999999998743                            599999999 4674333332  3899999999999


Q ss_pred             HHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCC
Q psy4039         348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG  427 (588)
Q Consensus       348 ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~  427 (588)
                      .|+.||.|||++|||+||||.+|||+|.+     |.+||+|||+|+.....     ...+.++||||.|||||++.++. 
T Consensus       476 ev~l~L~fLH~~~IIYRDlKLdNiLLD~e-----Gh~kiADFGlcKe~m~~-----g~~TsTfCGTpey~aPEil~e~~-  544 (694)
T KOG0694|consen  476 EVVLGLQFLHENGIIYRDLKLDNLLLDTE-----GHVKIADFGLCKEGMGQ-----GDRTSTFCGTPEFLAPEVLTEQS-  544 (694)
T ss_pred             HHHHHHHHHHhcCceeeecchhheEEccc-----CcEEecccccccccCCC-----CCccccccCChhhcChhhhccCc-
Confidence            99999999999999999999999999998     99999999999874321     22334899999999999999886 


Q ss_pred             CccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccccc--ccccCCCCCCccHHHHHHHHHhhhhCCCCCCCH-----H
Q psy4039         428 LFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSA-----E  500 (588)
Q Consensus       428 ~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~--~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~-----~  500 (588)
                           |+..+|+|||||+||||+.|..||.++.....+.  ....+..|..+|.++.++++++|.+||++|..+     +
T Consensus       545 -----Yt~aVDWW~lGVLlyeML~Gq~PF~gddEee~FdsI~~d~~~yP~~ls~ea~~il~~ll~k~p~kRLG~~e~d~~  619 (694)
T KOG0694|consen  545 -----YTRAVDWWGLGVLLYEMLVGESPFPGDDEEEVFDSIVNDEVRYPRFLSKEAIAIMRRLLRKNPEKRLGSGERDAE  619 (694)
T ss_pred             -----ccchhhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHhcCCCCCCCcccHHHHHHHHHHhccCcccccCCCCCCch
Confidence                 5577999999999999999999999865554443  234455778899999999999999999999865     5


Q ss_pred             HHHHHHhhhhhcCCcccc
Q psy4039         501 LAATVCQLYLWAPKHWLY  518 (588)
Q Consensus       501 e~l~~L~~~~~~~h~w~~  518 (588)
                      ++..         ||||+
T Consensus       620 ~i~~---------hpFFr  628 (694)
T KOG0694|consen  620 DIKK---------HPFFR  628 (694)
T ss_pred             hhhh---------CCccc
Confidence            6666         88886

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=100.00  E-value=2.2e-42  Score=353.89  Aligned_cols=257  Identities=25%  Similarity=0.311  Sum_probs=197.4

Q ss_pred             CCeEEeeeecccCceeEEEEEEC---CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR---GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~---g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      ++|++.+.||+|+||.||+|.+.   +..||||.+........               ......+|+.+++.+.. ..||
T Consensus         1 ~~Y~~~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~~---------------~~~~~~~e~~~l~~l~~-~~hp   64 (290)
T cd07862           1 QQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEG---------------MPLSTIREVAVLRHLET-FEHP   64 (290)
T ss_pred             CCcceeeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCCC---------------chHHHHHHHHHHHhhcc-cCCC
Confidence            46899999999999999999874   67899999854221111               11233457777766522 2799


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHh-cCCCCHHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRER-CAQLSMHERVLLFTQLLE  351 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~-~~~l~~~~~~~i~~ql~~  351 (588)
                      ||++++++|....                       ......+++||||++++|.+++... ...+++..+..++.|++.
T Consensus        65 niv~~~~~~~~~~-----------------------~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~  121 (290)
T cd07862          65 NVVRLFDVCTVSR-----------------------TDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLR  121 (290)
T ss_pred             CcceEEEEEeccc-----------------------CCCCCcEEEEEccCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence            9999999986421                       1123358999999999999999764 235899999999999999


Q ss_pred             HHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccC
Q psy4039         352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF  431 (588)
Q Consensus       352 gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~  431 (588)
                      ||.|||++||+||||||+|||++.+     +.+||+|||+++......      ......||+.|+|||++.+..     
T Consensus       122 aL~~lH~~~iiH~dlkp~Nil~~~~-----~~~kl~Dfg~~~~~~~~~------~~~~~~~~~~y~aPE~~~~~~-----  185 (290)
T cd07862         122 GLDFLHSHRVVHRDLKPQNILVTSS-----GQIKLADFGLARIYSFQM------ALTSVVVTLWYRAPEVLLQSS-----  185 (290)
T ss_pred             HHHHHHHCCeeeCCCCHHHEEEcCC-----CCEEEccccceEeccCCc------ccccccccccccChHHHhCCC-----
Confidence            9999999999999999999999987     789999999997654321      112456899999999997654     


Q ss_pred             CCCCcCchhhHHHHHHHHhcCCCCCcccccccccc----------ccc-------------------cCCCCCCccHHHH
Q psy4039         432 VNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE----------VNA-------------------LPQLNTNVPEVMR  482 (588)
Q Consensus       432 ~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~----------~~~-------------------~~~~~~~~~~~l~  482 (588)
                       ++.++|||||||++|||++|.+||.+........          ...                   ...+...+++.++
T Consensus       186 -~~~~~DiwslG~il~el~~g~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (290)
T cd07862         186 -YATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGK  264 (290)
T ss_pred             -CCCccchHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhchhhhcccchhccCCCCCCHHHHccCCCHHHH
Confidence             4578999999999999999999997632110000          000                   0011235778899


Q ss_pred             HHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccc
Q psy4039         483 RLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWL  517 (588)
Q Consensus       483 ~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~  517 (588)
                      +++.+||+.||++|||+.++++         |||+
T Consensus       265 ~li~~~l~~~P~~R~s~~~~l~---------hp~f  290 (290)
T cd07862         265 DLLLKCLTFNPAKRISAYSALS---------HPYF  290 (290)
T ss_pred             HHHHHHhccCchhcCCHHHHhc---------CCCC
Confidence            9999999999999999999999         9996

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=100.00  E-value=1.8e-42  Score=357.72  Aligned_cols=256  Identities=22%  Similarity=0.297  Sum_probs=201.1

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||.||+|.+.  ++.||||++......                .......+|+.+++.+    +|||
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~----------------~~~~~~~~E~~~l~~l----~h~n   64 (303)
T cd07869           5 DSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEE----------------GTPFTAIREASLLKGL----KHAN   64 (303)
T ss_pred             ccceEeeeEEecCCEEEEEEEECCCCCEEEEEEecccccc----------------ccchhHHHHHHHHhhC----CCCC
Confidence            78999999999999999999996  789999998532111                0122345689999887    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      |+++++++.+..                            ..++||||++++|.+++......+++..+..++.|++.||
T Consensus        65 iv~~~~~~~~~~----------------------------~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al  116 (303)
T cd07869          65 IVLLHDIIHTKE----------------------------TLTLVFEYVHTDLCQYMDKHPGGLHPENVKLFLFQLLRGL  116 (303)
T ss_pred             cCeEEEEEecCC----------------------------eEEEEEECCCcCHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence            999999987632                            4899999999999999987655799999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN  433 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~  433 (588)
                      .|||++||+||||||+|||++.+     +.+||+|||+++.......     ......||+.|+|||++.+...     +
T Consensus       117 ~~lH~~~ivH~dlkp~Nill~~~-----~~~kl~Dfg~~~~~~~~~~-----~~~~~~~~~~y~aPE~~~~~~~-----~  181 (303)
T cd07869         117 SYIHQRYILHRDLKPQNLLISDT-----GELKLADFGLARAKSVPSH-----TYSNEVVTLWYRPPDVLLGSTE-----Y  181 (303)
T ss_pred             HHHHHCCeecCCCCHHHEEECCC-----CCEEECCCCcceeccCCCc-----cCCCCcccCCCCChHHHcCCCC-----C
Confidence            99999999999999999999987     7899999999975432111     1113568999999999865431     4


Q ss_pred             CCcCchhhHHHHHHHHhcCCCCCcccccccc-c----------ccccc------CC---------C---------CCCcc
Q psy4039         434 YSKSDAWTAGTVAYEIFGHDNPFYQSARNTD-Y----------EVNAL------PQ---------L---------NTNVP  478 (588)
Q Consensus       434 ~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~-~----------~~~~~------~~---------~---------~~~~~  478 (588)
                      +.++||||+||++|||++|..||.+...... .          ....+      +.         .         ....+
T Consensus       182 ~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (303)
T cd07869         182 STCLDMWGVGCIFVEMIQGVAAFPGMKDIQDQLERIFLVLGTPNEDTWPGVHSLPHFKPERFTLYSPKNLRQAWNKLSYV  261 (303)
T ss_pred             CcHHHHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHhCCCChhhccchhhccccccccccccCCccHHHHhhccCCC
Confidence            4679999999999999999999975211000 0          00000      00         0         01245


Q ss_pred             HHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccCCCCC
Q psy4039         479 EVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGATPS  523 (588)
Q Consensus       479 ~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~~~~  523 (588)
                      +++++|+.+||+.||.+|||++++++         |||++...+.
T Consensus       262 ~~~~dli~~mL~~dp~~R~s~~~~l~---------h~~f~~~~~~  297 (303)
T cd07869         262 NHAEDLASKLLQCFPKNRLSAQAALS---------HEYFSDLPPR  297 (303)
T ss_pred             hHHHHHHHHHhccCchhccCHHHHhc---------CcccccCChh
Confidence            77899999999999999999999999         9999866553

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=100.00  E-value=1.3e-42  Score=365.49  Aligned_cols=257  Identities=22%  Similarity=0.302  Sum_probs=208.2

Q ss_pred             CCccccccCCeEEeeeecccCceeEEEEEEC---CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhh
Q psy4039         188 PDVDDVKVDDIQIGKFIAKGTNAVVYEATFR---GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNS  264 (588)
Q Consensus       188 ~~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~---g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~  264 (588)
                      .....+..++|++.+.||+|+||.||+|.+.   +..||||++......              .......+.+|+.+++.
T Consensus        22 ~~~~~~~~~~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~--------------~~~~~~~~~~E~~~l~~   87 (340)
T PTZ00426         22 KRKNKMKYEDFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKII--------------KQKQVDHVFSERKILNY   87 (340)
T ss_pred             ccCCCCChhhcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhh--------------hhhhHHHHHHHHHHHHh
Confidence            3446677899999999999999999999875   358999998531110              00122345678999988


Q ss_pred             hcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHH
Q psy4039         265 VENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERV  343 (588)
Q Consensus       265 l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~  343 (588)
                      +    +|||||++++++.+..                            .+|+||||+ +|+|.+++.... .+++..+.
T Consensus        88 l----~hp~Iv~~~~~~~~~~----------------------------~~~lv~Ey~~~g~L~~~i~~~~-~~~~~~~~  134 (340)
T PTZ00426         88 I----NHPFCVNLYGSFKDES----------------------------YLYLVLEFVIGGEFFTFLRRNK-RFPNDVGC  134 (340)
T ss_pred             C----CCCCCcceEEEEEeCC----------------------------EEEEEEeCCCCCcHHHHHHHcC-CCCHHHHH
Confidence            7    8999999999987632                            499999999 689999998764 79999999


Q ss_pred             HHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHh
Q psy4039         344 LLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVAL  423 (588)
Q Consensus       344 ~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~  423 (588)
                      .++.|++.||.|||++||+||||||+|||++.+     +.+||+|||+++......        ....||+.|||||++.
T Consensus       135 ~~~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~-----~~ikL~DFG~a~~~~~~~--------~~~~gt~~y~aPE~~~  201 (340)
T PTZ00426        135 FYAAQIVLIFEYLQSLNIVYRDLKPENLLLDKD-----GFIKMTDFGFAKVVDTRT--------YTLCGTPEYIAPEILL  201 (340)
T ss_pred             HHHHHHHHHHHHHHHCCeEccCCCHHHEEECCC-----CCEEEecCCCCeecCCCc--------ceecCChhhcCHHHHh
Confidence            999999999999999999999999999999877     899999999997654311        2457999999999997


Q ss_pred             cCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccccc--ccccCCCCCCccHHHHHHHHHhhhhCCCCCC----
Q psy4039         424 ATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVAKLLENDPSDRP----  497 (588)
Q Consensus       424 ~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~--~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rp----  497 (588)
                      +..      ++.++|||||||++|||++|..||.+......+.  ......++..++++++++|++||+.||++|+    
T Consensus       202 ~~~------~~~~~DiwSlGvil~ell~G~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~~l~~dp~~R~~~~~  275 (340)
T PTZ00426        202 NVG------HGKAADWWTLGIFIYEILVGCPPFYANEPLLIYQKILEGIIYFPKFLDNNCKHLMKKLLSHDLTKRYGNLK  275 (340)
T ss_pred             CCC------CCccccccchhhHHHHHhcCCCCCCCCCHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHcccCHHHcCCCCC
Confidence            654      4578999999999999999999998743221111  1122345677899999999999999999995    


Q ss_pred             -CHHHHHHHHhhhhhcCCccccC
Q psy4039         498 -SAELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       498 -s~~e~l~~L~~~~~~~h~w~~~  519 (588)
                       +++++++         |||+..
T Consensus       276 ~~~~~~~~---------hp~f~~  289 (340)
T PTZ00426        276 KGAQNVKE---------HPWFGN  289 (340)
T ss_pred             CCHHHHHc---------CCCcCC
Confidence             8999988         999974

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=100.00  E-value=2.1e-42  Score=362.77  Aligned_cols=260  Identities=23%  Similarity=0.293  Sum_probs=202.6

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEEC-------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHh
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATFR-------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMN  263 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~  263 (588)
                      |.+..++|++.+.||+|+||.||+|.+.       +..||||++......                .....+.+|+.++.
T Consensus         2 ~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~----------------~~~~~~~~E~~~l~   65 (338)
T cd05102           2 WEFPRDRLRLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGATA----------------SEHKALMSELKILI   65 (338)
T ss_pred             cccchhHceeeeEeccCCcceEEEEEEeccCCcccchhhheeccccccch----------------HHHHHHHHHHHHHH
Confidence            5667789999999999999999999753       468999998532110                01234567899998


Q ss_pred             hhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc--------
Q psy4039         264 SVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC--------  334 (588)
Q Consensus       264 ~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~--------  334 (588)
                      .+   .+|||||+++++|.+..                           ..++++|||+ +|+|.+++....        
T Consensus        66 ~l---~~h~niv~~~~~~~~~~---------------------------~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~  115 (338)
T cd05102          66 HI---GNHLNVVNLLGACTKPN---------------------------GPLMVIVEFCKYGNLSNFLRAKREFFSPYRE  115 (338)
T ss_pred             Hh---ccCcceeeEEeEecCCC---------------------------CceEEEEecCCCCcHHHHHHhcchhcccccc
Confidence            87   58999999999876521                           1389999999 689999997531        


Q ss_pred             -----------------------------------------------------CCCCHHHHHHHHHHHHHHHHHHHhCCc
Q psy4039         335 -----------------------------------------------------AQLSMHERVLLFTQLLEGVTHLNMHRT  361 (588)
Q Consensus       335 -----------------------------------------------------~~l~~~~~~~i~~ql~~gL~yLH~~~I  361 (588)
                                                                           ..+++..+..++.||++||.|||++||
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~i  195 (338)
T cd05102         116 KSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGSTNPPQETDDLWKSPLTMEDLICYSFQVARGMEFLASRKC  195 (338)
T ss_pred             cchhhhhhhhhhhhhhccccccccccCCccccccccccCcccccchhccccccCCCCHHHHHHHHHHHHHHHHHHHHCCE
Confidence                                                                 247888999999999999999999999


Q ss_pred             eeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCCcCchhh
Q psy4039         362 AHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWT  441 (588)
Q Consensus       362 vHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS  441 (588)
                      +||||||+|||++.+     +.+||+|||+++.........   ......+|+.|||||++.+..      ++.++||||
T Consensus       196 vHrDiKp~Nil~~~~-----~~~kl~DfG~a~~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~------~~~~sDiws  261 (338)
T cd05102         196 IHRDLAARNILLSEN-----NVVKICDFGLARDIYKDPDYV---RKGSARLPLKWMAPESIFDKV------YTTQSDVWS  261 (338)
T ss_pred             ECCCCccceEEEcCC-----CcEEEeecccccccccCcchh---cccCCCCCccccCcHHhhcCC------CCcccCHHH
Confidence            999999999999987     789999999998653321111   111345678999999997654      457899999


Q ss_pred             HHHHHHHHhc-CCCCCcccccccc----ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhh
Q psy4039         442 AGTVAYEIFG-HDNPFYQSARNTD----YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYL  510 (588)
Q Consensus       442 ~Gvil~Ellt-G~~Pf~~~~~~~~----~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~  510 (588)
                      |||++|||++ |..||.+......    ......+..+..+++++.+++.+||+.||++|||+.++++.|+..+
T Consensus       262 lG~il~el~~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPs~~el~~~l~~~~  335 (338)
T cd05102         262 FGVLLWEIFSLGASPYPGVQINEEFCQRLKDGTRMRAPENATPEIYRIMLACWQGDPKERPTFSALVEILGDLL  335 (338)
T ss_pred             HHHHHHHHHhCCCCCCCCCCccHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence            9999999997 9999976322111    1112233456678999999999999999999999999999887543

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=4.3e-42  Score=359.51  Aligned_cols=260  Identities=22%  Similarity=0.280  Sum_probs=199.6

Q ss_pred             CeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCce
Q psy4039         197 DIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNV  274 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNI  274 (588)
                      +|++.+.||+|+||.||+|++.  +..||||++......               ......+.+|+.+++.+    +||||
T Consensus         1 ry~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~---------------~~~~~~~~~E~~~l~~l----~hpni   61 (338)
T cd07859           1 RYKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEH---------------VSDATRILREIKLLRLL----RHPDI   61 (338)
T ss_pred             CeEEEEEEeecCCeEEEEEEECCCCCEEEEEEechhhcc---------------chhHHHHHHHHHHHHhC----CCCCE
Confidence            4889999999999999999986  789999998421100               00122456799999887    99999


Q ss_pred             EEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy4039         275 VVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVT  354 (588)
Q Consensus       275 V~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~  354 (588)
                      +++++++....                       ......+|+||||++++|.+++.... .+++..+..++.||++||.
T Consensus        62 v~~~~~~~~~~-----------------------~~~~~~~~lv~e~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~  117 (338)
T cd07859          62 VEIKHIMLPPS-----------------------RREFKDIYVVFELMESDLHQVIKAND-DLTPEHHQFFLYQLLRALK  117 (338)
T ss_pred             eeecceEeccC-----------------------CCCCceEEEEEecCCCCHHHHHHhcc-cCCHHHHHHHHHHHHHHHH
Confidence            99999886532                       11122489999999999999997654 7999999999999999999


Q ss_pred             HHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCC
Q psy4039         355 HLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY  434 (588)
Q Consensus       355 yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~  434 (588)
                      |||++||+||||||+|||++.+     +.+||+|||+++........  ........||+.|+|||++.+....    ++
T Consensus       118 ~LH~~~ivH~dlkp~NIll~~~-----~~~kL~Dfg~~~~~~~~~~~--~~~~~~~~~t~~y~aPE~~~~~~~~----~~  186 (338)
T cd07859         118 YIHTANVFHRDLKPKNILANAD-----CKLKICDFGLARVAFNDTPT--AIFWTDYVATRWYRAPELCGSFFSK----YT  186 (338)
T ss_pred             HHHHCCeecCCCCHHHeEECCC-----CcEEEccCccccccccccCc--cccccCCCCCCCcCCHHHHhccccc----cC
Confidence            9999999999999999999987     89999999999864332111  0111245799999999998653221    45


Q ss_pred             CcCchhhHHHHHHHHhcCCCCCcccccccc------------------------------ccccc---cCCCCCCccHHH
Q psy4039         435 SKSDAWTAGTVAYEIFGHDNPFYQSARNTD------------------------------YEVNA---LPQLNTNVPEVM  481 (588)
Q Consensus       435 ~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~------------------------------~~~~~---~~~~~~~~~~~l  481 (588)
                      .++|||||||++|||++|++||.+......                              .....   .......+++++
T Consensus       187 ~~~DvwSlGvvl~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (338)
T cd07859         187 PAIDIWSIGCIFAEVLTGKPLFPGKNVVHQLDLITDLLGTPSPETISRVRNEKARRYLSSMRKKQPVPFSQKFPNADPLA  266 (338)
T ss_pred             chhHHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhhhhhHHHHHHhhcccCCCchHHhcCCCChHH
Confidence            789999999999999999999965321000                              00000   001113467889


Q ss_pred             HHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccC
Q psy4039         482 RRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       482 ~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~  519 (588)
                      .+++.+||+.||++|||++++++         |||++.
T Consensus       267 ~~li~~~l~~~P~~Rpt~~e~l~---------hp~f~~  295 (338)
T cd07859         267 LRLLERLLAFDPKDRPTAEEALA---------DPYFKG  295 (338)
T ss_pred             HHHHHHHcCcCcccCCCHHHHhc---------Cchhhh
Confidence            99999999999999999999999         999974

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=100.00  E-value=5.3e-42  Score=350.61  Aligned_cols=251  Identities=19%  Similarity=0.265  Sum_probs=196.9

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||.||+|+++  ++.||||++......               ....+.+.+|+.+++.+    +|||
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~---------------~~~~~~~~~E~~~l~~l----~h~~   61 (287)
T cd07848           1 NKFEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEEN---------------EEVKETTLRELKMLRTL----KQEN   61 (287)
T ss_pred             CCceEEEEecccCCEEEEEEEECCCCcEEEEEEEeccccc---------------ccchhhHHHHHHHHHhC----CCcc
Confidence            47999999999999999999997  789999998532111               11233456789999887    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      |+++++++.+..                            .+++||||+.+++.+.+......+++..+..++.|++.||
T Consensus        62 iv~~~~~~~~~~----------------------------~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~qi~~~L  113 (287)
T cd07848          62 IVELKEAFRRRG----------------------------KLYLVFEYVEKNMLELLEEMPNGVPPEKVRSYIYQLIKAI  113 (287)
T ss_pred             ccchhhhEecCC----------------------------EEEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence            999999887632                            4899999997665566655445799999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN  433 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~  433 (588)
                      .|||+.+|+||||||+||+++.+     +.+||+|||+++.........    .....||+.|+|||++.+..      +
T Consensus       114 ~~lH~~~i~H~dlkp~Nill~~~-----~~~kl~Dfg~~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~------~  178 (287)
T cd07848         114 HWCHKNDIVHRDIKPENLLISHN-----DVLKLCDFGFARNLSEGSNAN----YTEYVATRWYRSPELLLGAP------Y  178 (287)
T ss_pred             HHHHHCCeecCCCCHHHEEEcCC-----CcEEEeeccCccccccccccc----ccccccccccCCcHHHcCCC------C
Confidence            99999999999999999999887     789999999998764422111    12456899999999997654      4


Q ss_pred             CCcCchhhHHHHHHHHhcCCCCCcccccccc------------------------ccccccC----------CCCCCccH
Q psy4039         434 YSKSDAWTAGTVAYEIFGHDNPFYQSARNTD------------------------YEVNALP----------QLNTNVPE  479 (588)
Q Consensus       434 ~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~------------------------~~~~~~~----------~~~~~~~~  479 (588)
                      +.++|||||||++|||++|++||.+......                        ......+          .....+|.
T Consensus       179 ~~~~DiwslGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  258 (287)
T cd07848         179 GKAVDMWSVGCILGELSDGQPLFPGESEIDQLFTIQKVLGPLPAEQMKLFYSNPRFHGLRFPAVNHPQSLERRYLGILSG  258 (287)
T ss_pred             CCchhHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhhCCCCHHHHHhhhccchhcccccCcccCcccHHHhhhcccCH
Confidence            5789999999999999999999975311000                        0000000          01123678


Q ss_pred             HHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccc
Q psy4039         480 VMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWL  517 (588)
Q Consensus       480 ~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~  517 (588)
                      ++.+||++||+.||++|||++++++         |||+
T Consensus       259 ~~~dll~~~L~~~P~~R~s~~~~l~---------hp~f  287 (287)
T cd07848         259 VLLDLMKNLLKLNPTDRYLTEQCLN---------HPAF  287 (287)
T ss_pred             HHHHHHHHHccCCcccCCCHHHHhc---------CCCC
Confidence            8999999999999999999999999         9996

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=100.00  E-value=4.8e-42  Score=351.65  Aligned_cols=251  Identities=22%  Similarity=0.302  Sum_probs=200.9

Q ss_pred             CeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCce
Q psy4039         197 DIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNV  274 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNI  274 (588)
                      .|+..+.||+|+||.||+|.+.  ++.||||.+.......              ......+.+|+.++..+    +|+||
T Consensus         1 ~f~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~--------------~~~~~~~~~E~~il~~l----~~~~i   62 (285)
T cd05631           1 TFRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKK--------------RKGEAMALNEKRILEKV----NSRFV   62 (285)
T ss_pred             CceEEEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhh--------------hhhHHHHHHHHHHHHhc----CCCcE
Confidence            3788899999999999999986  8899999985321110              00123456799999987    99999


Q ss_pred             EEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh-cCCCCHHHHHHHHHHHHHH
Q psy4039         275 VVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER-CAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       275 V~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~-~~~l~~~~~~~i~~ql~~g  352 (588)
                      +++++++.+..                            .+++||||+ +|+|..++... ...+++..+..++.|++.|
T Consensus        63 v~~~~~~~~~~----------------------------~~~lv~e~~~~g~L~~~~~~~~~~~~~~~~~~~~~~qi~~~  114 (285)
T cd05631          63 VSLAYAYETKD----------------------------ALCLVLTIMNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCG  114 (285)
T ss_pred             EEEEEEEccCC----------------------------eEEEEEEecCCCcHHHHHHhhCCCCCCHHHHHHHHHHHHHH
Confidence            99999887632                            489999999 68999888754 2368999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||+++|+||||||+|||++++     +.+||+|||++.....+...      ....||+.|||||++.+..      
T Consensus       115 l~~lH~~~iiH~dikp~Nill~~~-----~~~kl~Dfg~~~~~~~~~~~------~~~~g~~~y~aPE~~~~~~------  177 (285)
T cd05631         115 LEDLQRERIVYRDLKPENILLDDR-----GHIRISDLGLAVQIPEGETV------RGRVGTVGYMAPEVINNEK------  177 (285)
T ss_pred             HHHHHhCCEEeCCCCHHHEEECCC-----CCEEEeeCCCcEEcCCCCee------cCCCCCCCccCHhhhcCCC------
Confidence            999999999999999999999987     78999999999775432211      1356999999999997654      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCccccccccc------cccccCCCCCCccHHHHHHHHHhhhhCCCCCCC-----HHH
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY------EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS-----AEL  501 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~------~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps-----~~e  501 (588)
                      ++.++|||||||++|||++|+.||.........      .......++..+++++.+|+.+||+.||.+||+     +++
T Consensus       178 ~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~l~~~P~~R~~~~~~~~~~  257 (285)
T cd05631         178 YTFSPDWWGLGCLIYEMIQGQSPFRKRKERVKREEVDRRVKEDQEEYSEKFSEDAKSICRMLLTKNPKERLGCRGNGAAG  257 (285)
T ss_pred             CCcccCchhHHHHHHHHHhCCCCCCCCCcchhHHHHHHHhhcccccCCccCCHHHHHHHHHHhhcCHHHhcCCCCCCHHH
Confidence            457899999999999999999999764321111      111223455678999999999999999999997     889


Q ss_pred             HHHHHhhhhhcCCccccC
Q psy4039         502 AATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       502 ~l~~L~~~~~~~h~w~~~  519 (588)
                      +++         |||+..
T Consensus       258 ~~~---------h~~~~~  266 (285)
T cd05631         258 VKQ---------HPIFKN  266 (285)
T ss_pred             Hhc---------CHhhcC
Confidence            888         999965

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=100.00  E-value=2.2e-42  Score=360.94  Aligned_cols=246  Identities=23%  Similarity=0.311  Sum_probs=197.2

Q ss_pred             eeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEEee
Q psy4039         202 KFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHF  279 (588)
Q Consensus       202 ~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l~~  279 (588)
                      +.||+|+||.||+|.+.  ++.||||++.......              ......+.+|+.+++.+    +||||+++++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~--------------~~~~~~~~~e~~~l~~l----~hp~i~~~~~   62 (323)
T cd05571           1 KLLGKGTFGKVILVREKATGKYYAMKILKKEVIIA--------------KDEVAHTLTESRVLQNT----RHPFLTALKY   62 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhh--------------hHHHHHHHHHHHHHHhC----CCCCCCCEEE
Confidence            46999999999999986  7899999985311100              00122345688899887    9999999999


Q ss_pred             eeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh
Q psy4039         280 AFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNM  358 (588)
Q Consensus       280 ~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yLH~  358 (588)
                      ++.+..                            .+++||||+ +|+|.+++.... .+++.++..++.||+.||+|||+
T Consensus        63 ~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~L~~lH~  113 (323)
T cd05571          63 SFQTHD----------------------------RLCFVMEYANGGELFFHLSRER-VFSEDRARFYGAEIVSALGYLHS  113 (323)
T ss_pred             EEEcCC----------------------------EEEEEEeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHh
Confidence            887632                            499999999 689999997654 79999999999999999999999


Q ss_pred             CCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCCcCc
Q psy4039         359 HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSD  438 (588)
Q Consensus       359 ~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksD  438 (588)
                      +||+||||||+|||++.+     +.+||+|||+++......     ......+||+.|+|||++.+..      ++.++|
T Consensus       114 ~~ivHrDlkp~NIll~~~-----~~~kl~DfG~a~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~------~~~~~D  177 (323)
T cd05571         114 CDVVYRDLKLENLMLDKD-----GHIKITDFGLCKEGISDG-----ATMKTFCGTPEYLAPEVLEDND------YGRAVD  177 (323)
T ss_pred             CCeEeCCCCHHHEEECCC-----CCEEEeeCCCCcccccCC-----CcccceecCccccChhhhcCCC------CCcccc
Confidence            999999999999999987     789999999987532211     1112467999999999997654      457899


Q ss_pred             hhhHHHHHHHHhcCCCCCcccccccccc--ccccCCCCCCccHHHHHHHHHhhhhCCCCCC-----CHHHHHHHHhhhhh
Q psy4039         439 AWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVAKLLENDPSDRP-----SAELAATVCQLYLW  511 (588)
Q Consensus       439 VwS~Gvil~ElltG~~Pf~~~~~~~~~~--~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rp-----s~~e~l~~L~~~~~  511 (588)
                      |||+||++|||++|..||..........  ......++..+++++.++|.+||+.||++||     ++.++++       
T Consensus       178 iwSlG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~ll~-------  250 (323)
T cd05571         178 WWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPEDAKEIME-------  250 (323)
T ss_pred             CcccchhhhhhhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHccCCHHHcCCCCCCCHHHHHc-------
Confidence            9999999999999999997643222111  1223356678899999999999999999999     8999988       


Q ss_pred             cCCccccC
Q psy4039         512 APKHWLYG  519 (588)
Q Consensus       512 ~~h~w~~~  519 (588)
                        |||+..
T Consensus       251 --h~~f~~  256 (323)
T cd05571         251 --HRFFAS  256 (323)
T ss_pred             --CCCcCC
Confidence              999974

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>PTZ00036 glycogen synthase kinase; Provisional

Probab=100.00  E-value=5.3e-42  Score=373.05  Aligned_cols=255  Identities=20%  Similarity=0.284  Sum_probs=199.1

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      .++|++++.||+|+||+||+|.+.  ++.||||++...                     .....+|+.+|+.+    +||
T Consensus        65 ~~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~---------------------~~~~~~Ei~il~~l----~h~  119 (440)
T PTZ00036         65 NKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQD---------------------PQYKNRELLIMKNL----NHI  119 (440)
T ss_pred             CCeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecC---------------------cchHHHHHHHHHhc----CCC
Confidence            368999999999999999999986  789999998421                     11234689999987    999


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHH---hcCCCCHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRE---RCAQLSMHERVLLFTQL  349 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~---~~~~l~~~~~~~i~~ql  349 (588)
                      |||+++++|.....                    ........+++||||++++|.+++..   ....+++..++.++.||
T Consensus       120 niv~l~~~~~~~~~--------------------~~~~~~~~l~lvmE~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~qi  179 (440)
T PTZ00036        120 NIIFLKDYYYTECF--------------------KKNEKNIFLNVVMEFIPQTVHKYMKHYARNNHALPLFLVKLYSYQL  179 (440)
T ss_pred             CCcceeeeEeeccc--------------------ccCCCceEEEEEEecCCccHHHHHHHHhhcCCCCCHHHHHHHHHHH
Confidence            99999998765320                    01122335889999999899888764   23479999999999999


Q ss_pred             HHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCc
Q psy4039         350 LEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF  429 (588)
Q Consensus       350 ~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~  429 (588)
                      +.||.|||+++|+||||||+|||++.+.    ..+||+|||+|+....+..      .....||+.|+|||++.+...  
T Consensus       180 ~~gL~yLH~~~IiHrDLKp~NILl~~~~----~~vkL~DFGla~~~~~~~~------~~~~~~t~~y~aPE~~~~~~~--  247 (440)
T PTZ00036        180 CRALAYIHSKFICHRDLKPQNLLIDPNT----HTLKLCDFGSAKNLLAGQR------SVSYICSRFYRAPELMLGATN--  247 (440)
T ss_pred             HHHHHHHHHCCEecCCcCHHHEEEcCCC----CceeeeccccchhccCCCC------cccCCCCcCccCHHHhcCCCC--
Confidence            9999999999999999999999998652    4799999999987543221      113568999999999865431  


Q ss_pred             cCCCCCcCchhhHHHHHHHHhcCCCCCcccccccc----------------------ccccc---------cCCCCCCcc
Q psy4039         430 SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD----------------------YEVNA---------LPQLNTNVP  478 (588)
Q Consensus       430 ~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~----------------------~~~~~---------~~~~~~~~~  478 (588)
                         ++.++|||||||++|||++|.+||.+......                      +....         ...++...|
T Consensus       248 ---~~~~~DiwSlGvil~elltG~~pf~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~  324 (440)
T PTZ00036        248 ---YTTHIDLWSLGCIIAEMILGYPIFSGQSSVDQLVRIIQVLGTPTEDQLKEMNPNYADIKFPDVKPKDLKKVFPKGTP  324 (440)
T ss_pred             ---CCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhchhhhcccCCccCchhHHHHhccCCC
Confidence               45789999999999999999999976421100                      00000         011334578


Q ss_pred             HHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCcccc
Q psy4039         479 EVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLY  518 (588)
Q Consensus       479 ~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~  518 (588)
                      +++++||.+||+.||.+|||+.++++         |||+.
T Consensus       325 ~~~~~li~~~L~~dP~~R~ta~e~l~---------hp~f~  355 (440)
T PTZ00036        325 DDAINFISQFLKYEPLKRLNPIEALA---------DPFFD  355 (440)
T ss_pred             HHHHHHHHHHCCCChhHCcCHHHHhC---------ChhHH
Confidence            89999999999999999999999999         99987

>KOG0658|consensus

Probab=100.00  E-value=1.7e-42  Score=348.30  Aligned_cols=251  Identities=26%  Similarity=0.369  Sum_probs=204.5

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      -.|...++||.|+||+||+|...  +.+||||++..                     .++.-.+|..||+.+    .|||
T Consensus        24 i~~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~---------------------d~r~knrEl~im~~l----~HpN   78 (364)
T KOG0658|consen   24 ISYEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQ---------------------DKRYKNRELQIMRKL----DHPN   78 (364)
T ss_pred             EEEEeeEEEeecccceEEEEEEcCCCceeEEEEecC---------------------CCCcCcHHHHHHHhc----CCcC
Confidence            35778899999999999999997  68999999853                     333446799999976    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHh---cCCCCHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRER---CAQLSMHERVLLFTQLL  350 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~---~~~l~~~~~~~i~~ql~  350 (588)
                      ||+|..+|.....                       ....++.+||||+..+|.++++.-   +..++.-.+..++.||+
T Consensus        79 IV~L~~~f~~~~~-----------------------~d~~~lnlVleymP~tL~~~~r~~~~~~~~mp~~~iKLYt~Qlf  135 (364)
T KOG0658|consen   79 IVRLLYFFSSSTE-----------------------SDEVYLNLVLEYMPETLYRVIRHYTRANQRMPLLEIKLYTYQLF  135 (364)
T ss_pred             eeeEEEEEEecCC-----------------------CchhHHHHHHHhchHHHHHHHHHHhhcCCCCceeeeHHHHHHHH
Confidence            9999999887431                       123358899999999999999852   45899999999999999


Q ss_pred             HHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCcc
Q psy4039         351 EGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFS  430 (588)
Q Consensus       351 ~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~  430 (588)
                      +||.|||+.||+||||||.|||+|.+.    +.+||||||.|+....+...      ....-|..|.|||++.+...   
T Consensus       136 rgl~yLh~~~IcHRDIKPqNlLvD~~t----g~LKicDFGSAK~L~~~epn------iSYicSRyYRaPELifga~~---  202 (364)
T KOG0658|consen  136 RGLAYLHSHGICHRDIKPQNLLVDPDT----GVLKICDFGSAKVLVKGEPN------ISYICSRYYRAPELIFGATE---  202 (364)
T ss_pred             HHHHHHHhcCcccCCCChheEEEcCCC----CeEEeccCCcceeeccCCCc------eeEEEeccccCHHHHcCccc---
Confidence            999999999999999999999999874    89999999999987664321      13445779999999988763   


Q ss_pred             CCCCCcCchhhHHHHHHHHhcCCCCCccccc----------------------cccccc--------cccCC-CCCCccH
Q psy4039         431 FVNYSKSDAWTAGTVAYEIFGHDNPFYQSAR----------------------NTDYEV--------NALPQ-LNTNVPE  479 (588)
Q Consensus       431 ~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~----------------------~~~~~~--------~~~~~-~~~~~~~  479 (588)
                        |+.+.||||.||++.||+-|++-|.++..                      +..+..        ..+.. +....++
T Consensus       203 --Yt~~IDiWSaGCV~aELl~g~plFpG~s~~dQL~eIik~lG~Pt~e~I~~mn~~y~~~~~p~ik~~~~~~~~~~~~~~  280 (364)
T KOG0658|consen  203 --YTTSIDIWSAGCVMAELLKGQPLFPGDSSVDQLVEIIKVLGTPTREDIKSMNPNYTEFKFPQIKAHPWHKVFFKRLPP  280 (364)
T ss_pred             --cCceeEEhhhhHHHHHHhcCCcccCCCCHHHHHHHHHHHhCCCCHHHHhhcCcccccccCcccccccceeecccCCCH
Confidence              66789999999999999999999987311                      111111        11111 3456789


Q ss_pred             HHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCcccc
Q psy4039         480 VMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLY  518 (588)
Q Consensus       480 ~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~  518 (588)
                      ++.+|+.++|..+|.+|.++.|++.         ||++.
T Consensus       281 d~~dll~~~L~Y~P~~R~~~~~~l~---------h~fFd  310 (364)
T KOG0658|consen  281 DALDLLSKLLQYSPSKRLSALEALA---------HPFFD  310 (364)
T ss_pred             HHHHHHHHHhccChhhcCCHHHHhc---------chhhH
Confidence            9999999999999999999999999         99986

>KOG1187|consensus

Probab=100.00  E-value=5e-42  Score=361.67  Aligned_cols=247  Identities=23%  Similarity=0.290  Sum_probs=196.2

Q ss_pred             CCeEEeeeecccCceeEEEEEECC-eeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCce
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFRG-VEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNV  274 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~g-~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNI  274 (588)
                      ++|...+.||+|+||.||+|...+ ..||||++......                . .++|.+|+.++.++    +|||+
T Consensus        75 ~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~----------------~-~~eF~~Ei~~ls~l----~H~Nl  133 (361)
T KOG1187|consen   75 NNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQ----------------G-EREFLNEVEILSRL----RHPNL  133 (361)
T ss_pred             hCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCc----------------c-hhHHHHHHHHHhcC----CCcCc
Confidence            888888999999999999999985 89999987432110                0 34588899999998    89999


Q ss_pred             EEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcC-CCCHHHHHHHHHHHHHH
Q psy4039         275 VVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCA-QLSMHERVLLFTQLLEG  352 (588)
Q Consensus       275 V~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~-~l~~~~~~~i~~ql~~g  352 (588)
                      |+|+|||.+..                       .    ..++|+||+ +|+|.++|..... .++|.++.+|+.++|+|
T Consensus       134 v~LlGyC~e~~-----------------------~----~~~LVYEym~nGsL~d~L~~~~~~~L~W~~R~kIa~g~A~g  186 (361)
T KOG1187|consen  134 VKLLGYCLEGG-----------------------E----HRLLVYEYMPNGSLEDHLHGKKGEPLDWETRLKIALGAARG  186 (361)
T ss_pred             ccEEEEEecCC-----------------------c----eEEEEEEccCCCCHHHHhCCCCCCCCCHHHHHHHHHHHHHH
Confidence            99999998732                       0    389999999 7999999998755 89999999999999999


Q ss_pred             HHHHHhC---CceeccCCCCcEEEcCCCCCCCCceeeeccccccccCC-CCccccccccccc-cCCccccchhHHhcCCC
Q psy4039         353 VTHLNMH---RTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKS-GLSMQYSSADIEL-GGNVALMAPEVALATPG  427 (588)
Q Consensus       353 L~yLH~~---~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~-~~~~~~~~~~~~~-~GT~~Y~APE~l~~~~~  427 (588)
                      |+|||+.   .||||||||+|||+|++     +++||+|||+|+.... .....      +. .||.+|+|||++..+. 
T Consensus       187 L~yLH~~~~~~iiHrDiKssNILLD~~-----~~aKlsDFGLa~~~~~~~~~~~------~~~~gt~gY~~PEy~~~g~-  254 (361)
T KOG1187|consen  187 LAYLHEGCPPPIIHRDIKSSNILLDED-----FNAKLSDFGLAKLGPEGDTSVS------TTVMGTFGYLAPEYASTGK-  254 (361)
T ss_pred             HHHHccCCCCCEecCCCCHHHeeECCC-----CCEEccCccCcccCCcccccee------eecCCCCccCChhhhccCC-
Confidence            9999984   49999999999999988     8999999999976543 21111      12 7999999999997533 


Q ss_pred             CccCCCCCcCchhhHHHHHHHHhcCCCCCcccc---------------ccccccccccCCCC-CCcc--HH---HHHHHH
Q psy4039         428 LFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSA---------------RNTDYEVNALPQLN-TNVP--EV---MRRLVA  486 (588)
Q Consensus       428 ~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~---------------~~~~~~~~~~~~~~-~~~~--~~---l~~Li~  486 (588)
                           .++|+|||||||+++|++||+.|.....               ..........+.+. ...+  .+   +..+..
T Consensus       255 -----lt~KsDVySFGVvllElitgr~~~d~~~~~~~~~l~~w~~~~~~~~~~~eiiD~~l~~~~~~~~~~~~~~~~~a~  329 (361)
T KOG1187|consen  255 -----LTEKSDVYSFGVVLLELITGRKAVDQSRPRGELSLVEWAKPLLEEGKLREIVDPRLKEGEYPDEKEVKKLAELAL  329 (361)
T ss_pred             -----cCcccccccchHHHHHHHhCCcccCCCCCcccccHHHHHHHHHHCcchhheeCCCccCCCCChHHHHHHHHHHHH
Confidence                 5689999999999999999998876421               01112222233332 2333  22   556777


Q ss_pred             HhhhhCCCCCCCHHHHHHHHh
Q psy4039         487 KLLENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       487 ~~L~~dP~~Rps~~e~l~~L~  507 (588)
                      +|++.+|.+||+|.+++..|+
T Consensus       330 ~C~~~~~~~RP~m~~Vv~~L~  350 (361)
T KOG1187|consen  330 RCLRPDPKERPTMSQVVKELE  350 (361)
T ss_pred             HHcCcCCCcCcCHHHHHHHHH
Confidence            899999999999999988774

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=100.00  E-value=1.8e-41  Score=355.12  Aligned_cols=265  Identities=21%  Similarity=0.268  Sum_probs=208.3

Q ss_pred             cccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCC
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPP  270 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~  270 (588)
                      +..++|++.+.||+|+||.||++.+.  +..||+|.+....   .             ......+.+|+.+++.+    +
T Consensus         2 l~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~---~-------------~~~~~~~~~E~~~l~~l----~   61 (331)
T cd06649           2 LKDDDFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEI---K-------------PAIRNQIIRELQVLHEC----N   61 (331)
T ss_pred             CCcccceEEEeecCCCCEEEEEEEECCCCcEEEEEEeeccc---C-------------HHHHHHHHHHHHHHHHC----C
Confidence            44589999999999999999999997  7889999985311   0             01223466799999987    9


Q ss_pred             CCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4039         271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQL  349 (588)
Q Consensus       271 HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql  349 (588)
                      ||||+++++++.+..                            .+++||||+ +|+|.+++.... .+++..+..++.|+
T Consensus        62 h~~iv~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~i  112 (331)
T cd06649          62 SPYIVGFYGAFYSDG----------------------------EISICMEHMDGGSLDQVLKEAK-RIPEEILGKVSIAV  112 (331)
T ss_pred             CCCCCeEEEEEEECC----------------------------EEEEEeecCCCCcHHHHHHHcC-CCCHHHHHHHHHHH
Confidence            999999999987632                            489999999 579999998754 79999999999999


Q ss_pred             HHHHHHHHhC-CceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCC
Q psy4039         350 LEGVTHLNMH-RTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGL  428 (588)
Q Consensus       350 ~~gL~yLH~~-~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~  428 (588)
                      +.||.|||++ +|+||||||+|||++.+     +.+||+|||+++......       .....||+.|+|||++.+..  
T Consensus       113 ~~~l~~lH~~~~ivH~dlkp~Nil~~~~-----~~~kl~Dfg~~~~~~~~~-------~~~~~g~~~y~aPE~~~~~~--  178 (331)
T cd06649         113 LRGLAYLREKHQIMHRDVKPSNILVNSR-----GEIKLCDFGVSGQLIDSM-------ANSFVGTRSYMSPERLQGTH--  178 (331)
T ss_pred             HHHHHHHhhcCCEEcCCCChhhEEEcCC-----CcEEEccCcccccccccc-------cccCCCCcCcCCHhHhcCCC--
Confidence            9999999986 69999999999999987     789999999987653321       11356999999999997654  


Q ss_pred             ccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccc---------------c----------------------------
Q psy4039         429 FSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD---------------Y----------------------------  465 (588)
Q Consensus       429 ~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~---------------~----------------------------  465 (588)
                          ++.++|||||||++|||++|+.||........               .                            
T Consensus       179 ----~~~~~DiwslG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (331)
T cd06649         179 ----YSVQSDIWSMGLSLVELAIGRYPIPPPDAKELEAIFGRPVVDGEEGEPHSISPRPRPPGRPVSGHGMDSRPAMAIF  254 (331)
T ss_pred             ----CCchHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcccccccccCCccccCcccccccccccccccccccchhHH
Confidence                45789999999999999999999964210000               0                            


Q ss_pred             ------cccccCCC-CCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccCCCCChhHHHHHHHh
Q psy4039         466 ------EVNALPQL-NTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGATPSHNEIMQWLLT  533 (588)
Q Consensus       466 ------~~~~~~~~-~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~~~~~~~~~~~l~~  533 (588)
                            .....+.. ...+++++++||.+||+.||++|||++++++         |||++.......+...++..
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~~P~~Rpt~~ell~---------h~~~~~~~~~~~~~~~~~~~  320 (331)
T cd06649         255 ELLDYIVNEPPPKLPNGVFTPDFQEFVNKCLIKNPAERADLKMLMN---------HTFIKRSEVEEVDFAGWLCK  320 (331)
T ss_pred             HHHHHHHhCCCcCCCCccccHHHHHHHHHHccCCcccCCCHHHHhc---------ChHHhhcccccccHHHHHHH
Confidence                  00001111 1246789999999999999999999999999         99998655555555555543

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=100.00  E-value=1.9e-41  Score=354.86  Aligned_cols=255  Identities=23%  Similarity=0.347  Sum_probs=200.7

Q ss_pred             CeEEeeeecccCceeEEEEEEC-----CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCC
Q psy4039         197 DIQIGKFIAKGTNAVVYEATFR-----GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPH  271 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~~~-----g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~H  271 (588)
                      +|++.+.||+|+||.||++...     +..||+|++.+......             ....+.+.+|+.++..+   ..|
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~-------------~~~~~~~~~e~~~l~~l---~~~   64 (332)
T cd05614           1 NFELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQK-------------AKTVEHTRTERNVLEHV---RQS   64 (332)
T ss_pred             CceEEEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhh-------------hhHHHHHHHHHHHHHhc---cCC
Confidence            5889999999999999998863     78999999853111000             01123455688888876   469


Q ss_pred             CceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy4039         272 PNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLL  350 (588)
Q Consensus       272 pNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~  350 (588)
                      |||+++++++.+..                            .+++||||+ +|+|.+++..+. .+++.++..++.||+
T Consensus        65 ~~i~~~~~~~~~~~----------------------------~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~qi~  115 (332)
T cd05614          65 PFLVTLHYAFQTEA----------------------------KLHLILDYVSGGEMFTHLYQRD-NFSEDEVRFYSGEII  115 (332)
T ss_pred             CCcccEEEEEecCC----------------------------EEEEEEeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            99999998887532                            489999999 679999997654 799999999999999


Q ss_pred             HHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCcc
Q psy4039         351 EGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFS  430 (588)
Q Consensus       351 ~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~  430 (588)
                      .||.|||++||+||||||+|||++.+     +.+||+|||+++........    .....+||+.|||||++.+...   
T Consensus       116 ~~l~~lH~~~ivHrDlkp~Nili~~~-----~~~kl~DfG~~~~~~~~~~~----~~~~~~gt~~y~aPE~~~~~~~---  183 (332)
T cd05614         116 LALEHLHKLGIVYRDIKLENILLDSE-----GHVVLTDFGLSKEFLSEEKE----RTYSFCGTIEYMAPEIIRGKGG---  183 (332)
T ss_pred             HHHHHHHHCCcEecCCCHHHeEECCC-----CCEEEeeCcCCccccccCCC----ccccccCCccccCHHHhcCCCC---
Confidence            99999999999999999999999987     79999999999764332111    1124679999999999975431   


Q ss_pred             CCCCCcCchhhHHHHHHHHhcCCCCCcccccccc---c---cccccCCCCCCccHHHHHHHHHhhhhCCCCCC-----CH
Q psy4039         431 FVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD---Y---EVNALPQLNTNVPEVMRRLVAKLLENDPSDRP-----SA  499 (588)
Q Consensus       431 ~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~---~---~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rp-----s~  499 (588)
                        ++.++|||||||++|||++|..||........   +   .....+.++..+++.+++++.+||+.||++||     ++
T Consensus       184 --~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~~~~~~~~  261 (332)
T cd05614         184 --HGKAVDWWSLGILIFELLTGASPFTLEGERNTQSEVSRRILKCDPPFPSFIGPEAQDLLHKLLRKDPKKRLGAGPQGA  261 (332)
T ss_pred             --CCCccccccchhhhhhhhcCCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHcCCCHHHcCCCCCCCH
Confidence              34679999999999999999999964321111   0   11233456677899999999999999999999     78


Q ss_pred             HHHHHHHhhhhhcCCccccC
Q psy4039         500 ELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       500 ~e~l~~L~~~~~~~h~w~~~  519 (588)
                      +++++         |||++.
T Consensus       262 ~~~l~---------h~~~~~  272 (332)
T cd05614         262 SEIKE---------HPFFKG  272 (332)
T ss_pred             HHHHc---------CCCcCC
Confidence            89888         999975

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>KOG0201|consensus

Probab=100.00  E-value=6.1e-43  Score=357.34  Aligned_cols=253  Identities=22%  Similarity=0.279  Sum_probs=211.8

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ..|...+.||+|+||.||+|.+.  ++.||+|++.......                ..+++..|+.++..+    +++|
T Consensus        13 ~~~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~d----------------eIediqqei~~Ls~~----~~~~   72 (467)
T KOG0201|consen   13 LLYTKLELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAED----------------EIEDIQQEISVLSQC----DSPN   72 (467)
T ss_pred             cccccchhccccccceeeeeeeccccceEEEEEechhhcch----------------hhHHHHHHHHHHHhc----Ccch
Confidence            45667799999999999999998  7899999995422211                234566799999998    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |.++|+.|....                            .++++|||| +|++.+.|.... .+++..+..|+++++.|
T Consensus        73 it~yygsyl~g~----------------------------~LwiiMey~~gGsv~~lL~~~~-~~~E~~i~~ilre~l~~  123 (467)
T KOG0201|consen   73 ITEYYGSYLKGT----------------------------KLWIIMEYCGGGSVLDLLKSGN-ILDEFEIAVILREVLKG  123 (467)
T ss_pred             HHhhhhheeecc----------------------------cHHHHHHHhcCcchhhhhccCC-CCccceeeeehHHHHHH
Confidence            999999887632                            499999999 689999998763 55999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||+++.+|||||+.|||+..+     +.+||+|||.+-........     ..+++|||.|||||++.+..      
T Consensus       124 l~ylH~~~kiHrDIKaanil~s~~-----g~vkl~DfgVa~ql~~~~~r-----r~tfvGTPfwMAPEVI~~~~------  187 (467)
T KOG0201|consen  124 LDYLHSEKKIHRDIKAANILLSES-----GDVKLADFGVAGQLTNTVKR-----RKTFVGTPFWMAPEVIKQSG------  187 (467)
T ss_pred             hhhhhhcceecccccccceeEecc-----CcEEEEecceeeeeechhhc-----cccccccccccchhhhcccc------
Confidence            999999999999999999999988     89999999999776553322     13789999999999998655      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCccccccc---cccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhh
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNT---DYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLY  509 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~---~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~  509 (588)
                      |+.|+||||||++++||++|.+|+.......   .+.....|.+...+++.++++|..||+.||+.||+|.+++.     
T Consensus       188 Y~~KADIWSLGITaiEla~GePP~s~~hPmrvlflIpk~~PP~L~~~~S~~~kEFV~~CL~k~P~~RpsA~~LLK-----  262 (467)
T KOG0201|consen  188 YDTKADIWSLGITAIELAKGEPPHSKLHPMRVLFLIPKSAPPRLDGDFSPPFKEFVEACLDKNPEFRPSAKELLK-----  262 (467)
T ss_pred             ccchhhhhhhhHHHHHHhcCCCCCcccCcceEEEeccCCCCCccccccCHHHHHHHHHHhhcCcccCcCHHHHhh-----
Confidence            6689999999999999999999997743322   23344556677789999999999999999999999999999     


Q ss_pred             hhcCCccccCCCC
Q psy4039         510 LWAPKHWLYGATP  522 (588)
Q Consensus       510 ~~~~h~w~~~~~~  522 (588)
                          |.|++...+
T Consensus       263 ----h~FIk~a~k  271 (467)
T KOG0201|consen  263 ----HKFIKRAKK  271 (467)
T ss_pred             ----hHHHHhcCC
Confidence                999997443

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.2e-41  Score=353.49  Aligned_cols=245  Identities=24%  Similarity=0.350  Sum_probs=195.0

Q ss_pred             ecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEEeeee
Q psy4039         204 IAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAF  281 (588)
Q Consensus       204 IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l~~~~  281 (588)
                      ||+|+||.||+|.+.  ++.||||++.......              ......+.+|+.+++.+    +||||++++++|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~--------------~~~~~~~~~E~~~l~~l----~h~~iv~~~~~~   62 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVS--------------RSEVTHTLAERTVLAQV----NCPFIVPLKFSF   62 (312)
T ss_pred             CCcCCCeEEEEEEECCCCCEEEEEEEEHHHhhh--------------hhHHHHHHHHHHHHHhC----CCCcEeceeeEE
Confidence            799999999999987  7789999985311100              00123455688899887    999999999988


Q ss_pred             eccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC
Q psy4039         282 TDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHR  360 (588)
Q Consensus       282 ~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yLH~~~  360 (588)
                      .+..                            .+|+||||+ +|+|.+++.... .+++..+..++.|++.||.|||++|
T Consensus        63 ~~~~----------------------------~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH~~~  113 (312)
T cd05585          63 QSPE----------------------------KLYLVLAFINGGELFHHLQREG-RFDLSRARFYTAELLCALENLHKFN  113 (312)
T ss_pred             ecCC----------------------------eEEEEEcCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            7632                            489999999 689999997654 7999999999999999999999999


Q ss_pred             ceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCCcCchh
Q psy4039         361 TAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAW  440 (588)
Q Consensus       361 IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVw  440 (588)
                      |+||||||+|||++.+     +.+||+|||+++.......     .....+||+.|+|||++.+..      ++.++|||
T Consensus       114 i~HrDlkp~Nili~~~-----~~~kl~Dfg~~~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~------~~~~~Dvw  177 (312)
T cd05585         114 VIYRDLKPENILLDYQ-----GHIALCDFGLCKLNMKDDD-----KTNTFCGTPEYLAPELLLGHG------YTKAVDWW  177 (312)
T ss_pred             eEeCCCCHHHeEECCC-----CcEEEEECcccccCccCCC-----ccccccCCcccCCHHHHcCCC------CCCcccee
Confidence            9999999999999987     7899999999975432111     112467999999999997654      45789999


Q ss_pred             hHHHHHHHHhcCCCCCcccccccccc--ccccCCCCCCccHHHHHHHHHhhhhCCCCCCC---HHHHHHHHhhhhhcCCc
Q psy4039         441 TAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVAKLLENDPSDRPS---AELAATVCQLYLWAPKH  515 (588)
Q Consensus       441 S~Gvil~ElltG~~Pf~~~~~~~~~~--~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps---~~e~l~~L~~~~~~~h~  515 (588)
                      ||||++|||++|+.||.+......+.  ......++..+++++++++.+||+.||.+||+   +.++++         ||
T Consensus       178 slGvil~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~~~~~~~e~l~---------hp  248 (312)
T cd05585         178 TLGVLLYEMLTGLPPFYDENVNEMYRKILQEPLRFPDGFDRDAKDLLIGLLSRDPTRRLGYNGAQEIKN---------HP  248 (312)
T ss_pred             chhHHHHHHHhCCCCcCCCCHHHHHHHHHcCCCCCCCcCCHHHHHHHHHHcCCCHHHcCCCCCHHHHHc---------CC
Confidence            99999999999999997643222111  12233456788999999999999999999985   667666         99


Q ss_pred             cccCC
Q psy4039         516 WLYGA  520 (588)
Q Consensus       516 w~~~~  520 (588)
                      |+...
T Consensus       249 ~~~~~  253 (312)
T cd05585         249 FFSQL  253 (312)
T ss_pred             CcCCC
Confidence            99754

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>PHA02988 hypothetical protein; Provisional

Probab=100.00  E-value=2.7e-41  Score=346.25  Aligned_cols=258  Identities=18%  Similarity=0.198  Sum_probs=203.1

Q ss_pred             ccccCCeEEe--eeecccCceeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCC
Q psy4039         192 DVKVDDIQIG--KFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLP  269 (588)
Q Consensus       192 ~i~~~~~~~~--~~IG~G~fG~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~  269 (588)
                      .++.++++..  ..||+|++|.||+|.+.|+.||||.+......  ...            ..+.+.+|+.+|.++    
T Consensus        14 ~i~~~~i~~~~~~~i~~g~~~~v~~~~~~~~~vavK~~~~~~~~--~~~------------~~~~~~~E~~~l~~l----   75 (283)
T PHA02988         14 CIESDDIDKYTSVLIKENDQNSIYKGIFNNKEVIIRTFKKFHKG--HKV------------LIDITENEIKNLRRI----   75 (283)
T ss_pred             ecCHHHcCCCCCeEEeeCCceEEEEEEECCEEEEEEeccccccc--cHH------------HHHHHHHHHHHHHhc----
Confidence            3444555555  67999999999999999999999998542211  100            123456799999988    


Q ss_pred             CCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHH
Q psy4039         270 PHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQ  348 (588)
Q Consensus       270 ~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~q  348 (588)
                      +|||||++++++.+..                        .....+++||||+ +|+|.+++.... .+++.....++.|
T Consensus        76 ~h~nIv~~~g~~~~~~------------------------~~~~~~~lv~Ey~~~g~L~~~l~~~~-~~~~~~~~~i~~~  130 (283)
T PHA02988         76 DSNNILKIYGFIIDIV------------------------DDLPRLSLILEYCTRGYLREVLDKEK-DLSFKTKLDMAID  130 (283)
T ss_pred             CCCCEEEEeeeEEecc------------------------cCCCceEEEEEeCCCCcHHHHHhhCC-CCChhHHHHHHHH
Confidence            9999999999987621                        1122489999999 589999998754 7999999999999


Q ss_pred             HHHHHHHHHh-CCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCC
Q psy4039         349 LLEGVTHLNM-HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG  427 (588)
Q Consensus       349 l~~gL~yLH~-~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~  427 (588)
                      ++.||.|||+ .+++||||||+|||++.+     +.+||+|||+++......        ....||+.|+|||++.+...
T Consensus       131 i~~~l~~lH~~~~~~Hrdlkp~nill~~~-----~~~kl~dfg~~~~~~~~~--------~~~~~~~~y~aPE~~~~~~~  197 (283)
T PHA02988        131 CCKGLYNLYKYTNKPYKNLTSVSFLVTEN-----YKLKIICHGLEKILSSPP--------FKNVNFMVYFSYKMLNDIFS  197 (283)
T ss_pred             HHHHHHHHHhcCCCCCCcCChhhEEECCC-----CcEEEcccchHhhhcccc--------ccccCcccccCHHHhhhccc
Confidence            9999999998 499999999999999988     899999999997653321        13458899999999975321


Q ss_pred             CccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccc----cccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHH
Q psy4039         428 LFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY----EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAA  503 (588)
Q Consensus       428 ~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~----~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l  503 (588)
                      .    ++.++|||||||++|||++|+.||.+......+    .....+.++..+|+++++++.+||+.||++|||+++++
T Consensus       198 ~----~~~k~Di~SlGvil~el~~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~ell  273 (283)
T PHA02988        198 E----YTIKDDIYSLGVVLWEIFTGKIPFENLTTKEIYDLIINKNNSLKLPLDCPLEIKCIVEACTSHDSIKRPNIKEIL  273 (283)
T ss_pred             c----ccchhhhhHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcCCCCCCCCcCcHHHHHHHHHHhcCCcccCcCHHHHH
Confidence            1    457899999999999999999999864322111    12233445567899999999999999999999999999


Q ss_pred             HHHhhh
Q psy4039         504 TVCQLY  509 (588)
Q Consensus       504 ~~L~~~  509 (588)
                      +.|+.+
T Consensus       274 ~~l~~~  279 (283)
T PHA02988        274 YNLSLY  279 (283)
T ss_pred             HHHHHH
Confidence            988754

>PHA03212 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=1.8e-41  Score=363.46  Aligned_cols=247  Identities=20%  Similarity=0.332  Sum_probs=197.1

Q ss_pred             cccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCC
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPP  270 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~  270 (588)
                      +...+|++.+.||+|+||.||+|.+.  ++.||||...                       ...+.+|+.+++.+    +
T Consensus        89 ~~~~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~-----------------------~~~~~~E~~il~~l----~  141 (391)
T PHA03212         89 IEKAGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQ-----------------------RGGTATEAHILRAI----N  141 (391)
T ss_pred             cccCCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechh-----------------------hhhhHHHHHHHHhC----C
Confidence            44578999999999999999999987  7899999752                       12345799999987    9


Q ss_pred             CCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy4039         271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLL  350 (588)
Q Consensus       271 HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~  350 (588)
                      |||||+++++|....                            ..+++||++.++|..++.... .+++.+++.++.||+
T Consensus       142 HpnIv~~~~~~~~~~----------------------------~~~lv~e~~~~~L~~~l~~~~-~l~~~~~~~i~~qi~  192 (391)
T PHA03212        142 HPSIIQLKGTFTYNK----------------------------FTCLILPRYKTDLYCYLAAKR-NIAICDILAIERSVL  192 (391)
T ss_pred             CCCCCCEeEEEEECC----------------------------eeEEEEecCCCCHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence            999999999987632                            489999999999999987654 789999999999999


Q ss_pred             HHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCcc
Q psy4039         351 EGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFS  430 (588)
Q Consensus       351 ~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~  430 (588)
                      .||.|||++||+||||||+|||++.+     +.+||+|||+|+.......    .......||+.|+|||++.+..    
T Consensus       193 ~aL~ylH~~~IvHrDiKP~NIll~~~-----~~vkL~DFG~a~~~~~~~~----~~~~~~~gt~~y~aPE~~~~~~----  259 (391)
T PHA03212        193 RAIQYLHENRIIHRDIKAENIFINHP-----GDVCLGDFGAACFPVDINA----NKYYGWAGTIATNAPELLARDP----  259 (391)
T ss_pred             HHHHHHHhCCcccCCCChHhEEEcCC-----CCEEEEeCCcccccccccc----cccccccCccCCCChhhhcCCC----
Confidence            99999999999999999999999987     7899999999975322111    1112457999999999997654    


Q ss_pred             CCCCCcCchhhHHHHHHHHhcCCCCCccccccc---------------------ccc-------------c----cccCC
Q psy4039         431 FVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNT---------------------DYE-------------V----NALPQ  472 (588)
Q Consensus       431 ~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~---------------------~~~-------------~----~~~~~  472 (588)
                        ++.++|||||||++|||++|..||.......                     .+.             .    ...+.
T Consensus       260 --~~~~~DiwSlGvil~elltg~~p~~~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (391)
T PHA03212        260 --YGPAVDIWSAGIVLFEMATCHDSLFEKDGLDGDCDSDRQIKLIIRRSGTHPNEFPIDAQANLDEIYIGLAKKSSRKPG  337 (391)
T ss_pred             --CCcHHHHHHHHHHHHHHHHCCCCcCCcccccccCchhHHHHHHHHHhcCChhhcCcchhHHHHHHHHHHHhccCCCCC
Confidence              4578999999999999999998875421000                     000             0    00000


Q ss_pred             -C-----CCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccC
Q psy4039         473 -L-----NTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       473 -~-----~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~  519 (588)
                       .     ...+|.++.+||.+||+.||.+|||++|+++         |||++.
T Consensus       338 ~~~~~~~~~~~~~~l~~Li~~mL~~dP~~Rpta~elL~---------hp~f~~  381 (391)
T PHA03212        338 SRPLWTNLYELPIDLEYLICKMLAFDAHHRPSAEALLD---------FAAFQD  381 (391)
T ss_pred             CCCCHHHHhhhhhhHHHHHHHHhcCChhhCCCHHHHhc---------Chhhcc
Confidence             0     0135678999999999999999999999999         999974

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=100.00  E-value=1.7e-41  Score=361.12  Aligned_cols=261  Identities=20%  Similarity=0.314  Sum_probs=205.6

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCC
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENL  268 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l  268 (588)
                      ..+..++|++.+.||+|+||.||+|.+.  +..||||++.......              ......+.+|+.+++.+   
T Consensus        38 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~--------------~~~~~~~~~e~~il~~~---  100 (370)
T cd05596          38 LRMKAEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIK--------------RSDSAFFWEERDIMAHA---  100 (370)
T ss_pred             CCCCHHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhh--------------hhhHHHHHHHHHHHHhC---
Confidence            4456689999999999999999999987  7899999985311100              01223356788898887   


Q ss_pred             CCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHH
Q psy4039         269 PPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFT  347 (588)
Q Consensus       269 ~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~  347 (588)
                       +||||+++++++.+..                            .+|+||||+ +|+|.+++...  .+++..+..++.
T Consensus       101 -~h~~iv~~~~~~~~~~----------------------------~~~lv~Ey~~gg~L~~~l~~~--~l~~~~~~~~~~  149 (370)
T cd05596         101 -NSEWIVQLHYAFQDDK----------------------------YLYMVMEYMPGGDLVNLMSNY--DIPEKWARFYTA  149 (370)
T ss_pred             -CCCCcceEEEEEecCC----------------------------EEEEEEcCCCCCcHHHHHHhc--CCCHHHHHHHHH
Confidence             9999999999887632                            499999999 68999999765  789999999999


Q ss_pred             HHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCC
Q psy4039         348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG  427 (588)
Q Consensus       348 ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~  427 (588)
                      ||+.||.|||++||+||||||+|||++.+     +.+||+|||+++.........    ....+||+.|||||++.+...
T Consensus       150 qi~~aL~~LH~~~ivHrDLkp~NILl~~~-----~~~kL~DfG~~~~~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~  220 (370)
T cd05596         150 EVVLALDAIHSMGFIHRDVKPDNMLLDKS-----GHLKLADFGTCMKMDANGMVR----CDTAVGTPDYISPEVLKSQGG  220 (370)
T ss_pred             HHHHHHHHHHHCCeeccCCCHHHEEEcCC-----CCEEEEeccceeeccCCCccc----CCCCCCCcCeECHHHhccCCC
Confidence            99999999999999999999999999987     899999999998754322111    124579999999999976432


Q ss_pred             CccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccccccc----ccCCCC--CCccHHHHHHHHHhhhhCCCC--CCCH
Q psy4039         428 LFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVN----ALPQLN--TNVPEVMRRLVAKLLENDPSD--RPSA  499 (588)
Q Consensus       428 ~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~~----~~~~~~--~~~~~~l~~Li~~~L~~dP~~--Rps~  499 (588)
                        ...++.++|||||||++|||++|+.||.+......+...    ....++  ..+|.++++||.+||+.+|.+  |+++
T Consensus       221 --~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~~p~r~~R~s~  298 (370)
T cd05596         221 --DGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMDHKNSLTFPDDIEISKQAKDLICAFLTDREVRLGRNGV  298 (370)
T ss_pred             --CCCCCCceeeeehhHHHHHHHhCCCCcCCCCHHHHHHHHHcCCCcCCCCCcCCCCHHHHHHHHHHccChhhccCCCCH
Confidence              111457899999999999999999999875332221111    111222  257899999999999999987  9999


Q ss_pred             HHHHHHHhhhhhcCCccccC
Q psy4039         500 ELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       500 ~e~l~~L~~~~~~~h~w~~~  519 (588)
                      +++++         |||++.
T Consensus       299 ~ell~---------h~~~~~  309 (370)
T cd05596         299 DEIKS---------HPFFKN  309 (370)
T ss_pred             HHHhc---------CcccCC
Confidence            99999         999974

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.8e-41  Score=359.50  Aligned_cols=256  Identities=21%  Similarity=0.327  Sum_probs=199.8

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||+||+|.+.  ++.||||++......           .   ......+.+|+.++..+    +|||
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~-----------~---~~~~~~~~~E~~il~~l----~h~~   62 (364)
T cd05599           1 DDFESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEML-----------E---KEQVAHVRAERDILAEA----DNPW   62 (364)
T ss_pred             CCceEEEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhh-----------h---hhHHHHHHHHHHHHHhC----CCCC
Confidence            47999999999999999999996  789999999531100           0   01123456789999887    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |++++++|.+..                            .+|+||||+ +|+|.+++...+ .+++..+..++.|++.|
T Consensus        63 iv~~~~~~~~~~----------------------------~~~lv~E~~~~g~L~~~l~~~~-~l~~~~~~~~~~qi~~a  113 (364)
T cd05599          63 VVKLYYSFQDEN----------------------------YLYLIMEYLPGGDMMTLLMKKD-TFTEEETRFYIAETILA  113 (364)
T ss_pred             CcceEEEEEcCC----------------------------eEEEEECCCCCcHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence            999999988632                            499999999 689999998754 79999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCcccc-----------------------------
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQY-----------------------------  403 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~-----------------------------  403 (588)
                      |.|||++||+||||||+|||++.+     +.+||+|||+++..........                             
T Consensus       114 L~~lH~~~ivH~Dlkp~NIl~~~~-----~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (364)
T cd05599         114 IDSIHKLGYIHRDIKPDNLLLDAK-----GHIKLSDFGLCTGLKKSHRTEFYRILSHALPSNFLDFISKPMSSKRKAETW  188 (364)
T ss_pred             HHHHHHCCeEeccCCHHHeEECCC-----CCEEEeecccceeccccccccccccccccccccccccccccccccccccch
Confidence            999999999999999999999988     8999999999976432111000                             


Q ss_pred             ----ccccccccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccccc----ccccCCC--
Q psy4039         404 ----SSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE----VNALPQL--  473 (588)
Q Consensus       404 ----~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~----~~~~~~~--  473 (588)
                          .......+||+.|+|||++....      ++.++|||||||++|||++|..||.+........    ......+  
T Consensus       189 ~~~~~~~~~~~~gt~~y~aPE~~~~~~------~~~~~DiwSlG~il~el~~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~  262 (364)
T cd05599         189 KRNRRALAYSTVGTPDYIAPEVFLQTG------YNKECDWWSLGVIMYEMLVGYPPFCSDNPQETYRKIINWKETLQFPD  262 (364)
T ss_pred             hhcccccccccccCccccCHHHHcCCC------CCCeeeeecchhHHHHhhcCCCCCCCCCHHHHHHHHHcCCCccCCCC
Confidence                00011346999999999987654      4578999999999999999999997643221111    0011112  


Q ss_pred             CCCccHHHHHHHHHhhhhCCCCCCC---HHHHHHHHhhhhhcCCccccC
Q psy4039         474 NTNVPEVMRRLVAKLLENDPSDRPS---AELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       474 ~~~~~~~l~~Li~~~L~~dP~~Rps---~~e~l~~L~~~~~~~h~w~~~  519 (588)
                      ...++++++++|.+||. +|.+|++   ++++++         |||++.
T Consensus       263 ~~~~s~~~~~li~~ll~-~p~~R~~~~~~~~ll~---------h~~~~~  301 (364)
T cd05599         263 EVPLSPEAKDLIKRLCC-EAERRLGNNGVNEIKS---------HPFFKG  301 (364)
T ss_pred             CCCCCHHHHHHHHHHcc-CHhhcCCCCCHHHHhc---------CCCcCC
Confidence            23578999999999996 9999998   999888         999974

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=100.00  E-value=2.3e-41  Score=359.05  Aligned_cols=258  Identities=21%  Similarity=0.304  Sum_probs=197.9

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||+||+|.+.  ++.||||++.......              ......+.+|+.++..+    +|||
T Consensus         1 ~~y~~~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~--------------~~~~~~~~~E~~il~~~----~~~~   62 (363)
T cd05628           1 EDFESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLE--------------KEQVGHIRAERDILVEA----DSLW   62 (363)
T ss_pred             CCceEeEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHH--------------hhHHHHHHHHHHHHHhC----CCCC
Confidence            47899999999999999999986  7899999995311100              00123456788888887    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++++.+..                            .+|+||||+ +|+|.+++...+ .+++.++..++.|++.|
T Consensus        63 iv~~~~~~~~~~----------------------------~~~lv~E~~~gg~L~~~l~~~~-~l~~~~~~~~~~qi~~a  113 (363)
T cd05628          63 VVKMFYSFQDKL----------------------------NLYLIMEFLPGGDMMTLLMKKD-TLTEEETQFYIAETVLA  113 (363)
T ss_pred             cceEEEEEecCC----------------------------eEEEEEcCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHH
Confidence            999999987632                            499999999 689999998754 89999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccc------------------------------
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQ------------------------------  402 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~------------------------------  402 (588)
                      |.|||++||+||||||+|||++.+     +.+||+|||+|+.........                              
T Consensus       114 L~~lH~~givHrDlKp~NILi~~~-----~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (363)
T cd05628         114 IDSIHQLGFIHRDIKPDNLLLDSK-----GHVKLSDFGLCTGLKKAHRTEFYRNLNHSLPSDFTFQNMNSKRKAETWKRN  188 (363)
T ss_pred             HHHHHhCCeEecCCCHHHeEECCC-----CCEEEeeccCcccccccccccccccccccccccccccccccccccchhhhc
Confidence            999999999999999999999987     799999999997643211000                              


Q ss_pred             cccccccccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccccccc----ccCCCC--CC
Q psy4039         403 YSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVN----ALPQLN--TN  476 (588)
Q Consensus       403 ~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~~----~~~~~~--~~  476 (588)
                      ........+||+.|+|||++.+..      ++.++|||||||++|||++|+.||.+......+...    ....++  ..
T Consensus       189 ~~~~~~~~~Gt~~Y~aPE~~~~~~------~~~~~DvwSlGvil~ell~G~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~  262 (363)
T cd05628         189 RRQLAFSTVGTPDYIAPEVFMQTG------YNKLCDWWSLGVIMYEMLIGYPPFCSETPQETYKKVMNWKETLIFPPEVP  262 (363)
T ss_pred             cccccccccCCccccCHHHHcCCC------CCCchhhhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHcCcCcccCCCcCC
Confidence            000012457999999999997654      457899999999999999999999764322221110    111122  24


Q ss_pred             ccHHHHHHHHHhhh--hCCCCCCCHHHHHHHHhhhhhcCCccccCC
Q psy4039         477 VPEVMRRLVAKLLE--NDPSDRPSAELAATVCQLYLWAPKHWLYGA  520 (588)
Q Consensus       477 ~~~~l~~Li~~~L~--~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~  520 (588)
                      +++++++++.+|+.  .++..||+++++++         |||++..
T Consensus       263 ~s~~~~~li~~l~~~~~~r~~r~~~~ei~~---------hp~f~~~  299 (363)
T cd05628         263 ISEKAKDLILRFCCEWEHRIGAPGVEEIKT---------NPFFEGV  299 (363)
T ss_pred             CCHHHHHHHHHHcCChhhcCCCCCHHHHhC---------CCCCCCC
Confidence            78899999999764  23345689999988         9999743

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=100.00  E-value=7.5e-41  Score=342.00  Aligned_cols=256  Identities=23%  Similarity=0.293  Sum_probs=196.6

Q ss_pred             CeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCce
Q psy4039         197 DIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNV  274 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNI  274 (588)
                      +|++.+.||+|+||+||+|.++  ++.||+|.+........               ......+|+.+++.+.. .+||||
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~~---------------~~~~~~~e~~~l~~l~~-~~h~ni   64 (288)
T cd07863           1 QYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDG---------------LPLSTVREVALLKRLEA-FDHPNI   64 (288)
T ss_pred             CceEeeEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCCC---------------CchHHHHHHHHHHHhhh-cCCCCe
Confidence            4889999999999999999987  78999999853211110               11233457777666522 279999


Q ss_pred             EEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhc-CCCCHHHHHHHHHHHHHHH
Q psy4039         275 VVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERC-AQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       275 V~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~-~~l~~~~~~~i~~ql~~gL  353 (588)
                      +++++++.+..                       ......++++||++.++|.+++.... ..+++.++..++.|++.||
T Consensus        65 ~~~~~~~~~~~-----------------------~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al  121 (288)
T cd07863          65 VRLMDVCATSR-----------------------TDRETKVTLVFEHVDQDLRTYLDKVPPPGLPAETIKDLMRQFLRGL  121 (288)
T ss_pred             eeeeeeecccc-----------------------CCCCceEEEEEcccccCHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Confidence            99999887531                       11223589999999889999987643 3589999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN  433 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~  433 (588)
                      .|||++||+||||||+|||++.+     +.+||+|||+++.......      .....||+.|+|||++.+..      +
T Consensus       122 ~~lH~~~ivH~dikp~Nili~~~-----~~~kl~dfg~~~~~~~~~~------~~~~~~~~~y~aPE~~~~~~------~  184 (288)
T cd07863         122 DFLHANCIVHRDLKPENILVTSG-----GQVKLADFGLARIYSCQMA------LTPVVVTLWYRAPEVLLQST------Y  184 (288)
T ss_pred             HHHHhCCeecCCCCHHHEEECCC-----CCEEECccCccccccCccc------CCCccccccccCchHhhCCC------C
Confidence            99999999999999999999987     7899999999976543211      11356899999999997654      4


Q ss_pred             CCcCchhhHHHHHHHHhcCCCCCccccccccc---------------cc------c--------ccCCCCCCccHHHHHH
Q psy4039         434 YSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY---------------EV------N--------ALPQLNTNVPEVMRRL  484 (588)
Q Consensus       434 ~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~---------------~~------~--------~~~~~~~~~~~~l~~L  484 (588)
                      +.++||||+||++|||++|.+||.........               ..      .        ........++++++++
T Consensus       185 ~~~~DiwslG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  264 (288)
T cd07863         185 ATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPPEDDWPRDVTLPRGAFSPRGPRPVQSVVPEIEESGAQL  264 (288)
T ss_pred             CCcchhhhHHHHHHHHHhCCcCcCCCCHHHHHHHHHHHhCCCChhhCcccccccccccCCCCCCchHHhCcCcCHHHHHH
Confidence            57899999999999999999999653111000               00      0        0001123577889999


Q ss_pred             HHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccc
Q psy4039         485 VAKLLENDPSDRPSAELAATVCQLYLWAPKHWL  517 (588)
Q Consensus       485 i~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~  517 (588)
                      +.+||+.||++|||+.+++.         ||||
T Consensus       265 i~~~L~~dP~~R~t~~~~l~---------hp~f  288 (288)
T cd07863         265 LLEMLTFNPHKRISAFRALQ---------HPFF  288 (288)
T ss_pred             HHHHhccCcccCCCHHHHhc---------CCCC
Confidence            99999999999999999999         9996

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.6e-41  Score=354.08  Aligned_cols=249  Identities=26%  Similarity=0.300  Sum_probs=200.7

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||.||+|.+.  ++.||||++.......              ......+.+|+.++..+    +|||
T Consensus         1 ~~y~~~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~--------------~~~~~~~~~e~~~l~~~----~h~~   62 (333)
T cd05600           1 KDFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFK--------------LNEVRHVLTERDILTTT----KSEW   62 (333)
T ss_pred             CCcEEEEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhh--------------hhHHHHHHHHHHHHHhC----CCCC
Confidence            47999999999999999999996  7899999985311000              00123456788898887    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++++.+..                            ..|+||||+ +|+|.+++.... .+++.++..++.||+.|
T Consensus        63 iv~~~~~~~~~~----------------------------~~~lv~e~~~g~~L~~~l~~~~-~l~~~~~~~~~~qi~~~  113 (333)
T cd05600          63 LVKLLYAFQDDE----------------------------YLYLAMEYVPGGDFRTLLNNLG-VLSEDHARFYMAEMFEA  113 (333)
T ss_pred             CccEEEEEEcCC----------------------------EEEEEEeCCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence            999999987632                            599999999 689999997654 79999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||++||+||||||+|||++.+     +.+||+|||+++....        ......||+.|+|||++.+..      
T Consensus       114 l~~lH~~~ivH~dlkp~Nil~~~~-----~~~kL~Dfg~a~~~~~--------~~~~~~gt~~y~aPE~~~~~~------  174 (333)
T cd05600         114 VDALHELGYIHRDLKPENFLIDAS-----GHIKLTDFGLSKGIVT--------YANSVVGSPDYMAPEVLRGKG------  174 (333)
T ss_pred             HHHHHHCCccccCCCHHHEEECCC-----CCEEEEeCcCCccccc--------ccCCcccCccccChhHhcCCC------
Confidence            999999999999999999999987     7999999999976533        112457999999999997664      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcccccccccc------c-cccCCCC---CCccHHHHHHHHHhhhhCCCCCCCHHHH
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE------V-NALPQLN---TNVPEVMRRLVAKLLENDPSDRPSAELA  502 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~------~-~~~~~~~---~~~~~~l~~Li~~~L~~dP~~Rps~~e~  502 (588)
                      ++.++|||||||++|||++|..||........+.      . ...+...   ..+++++.+++.+||..+|.+||+++++
T Consensus       175 ~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~s~~~~~li~~~l~~~~~rr~s~~~l  254 (333)
T cd05600         175 YDFTVDYWSLGCMLYEFLCGFPPFSGSTPNETWENLKYWKETLQRPVYDDPRFNLSDEAWDLITKLINDPSRRFGSLEDI  254 (333)
T ss_pred             CCCccceecchHHHhhhhhCCCCCCCCCHHHHHHHHHhccccccCCCCCccccccCHHHHHHHHHHhhChhhhcCCHHHH
Confidence            4578999999999999999999997642211110      0 1111111   2568999999999999999999999999


Q ss_pred             HHHHhhhhhcCCccccC
Q psy4039         503 ATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       503 l~~L~~~~~~~h~w~~~  519 (588)
                      ++         |||+..
T Consensus       255 l~---------h~~~~~  262 (333)
T cd05600         255 KN---------HPFFKE  262 (333)
T ss_pred             Hh---------CcccCC
Confidence            99         999974

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=100.00  E-value=2.2e-41  Score=354.32  Aligned_cols=246  Identities=22%  Similarity=0.316  Sum_probs=196.3

Q ss_pred             eeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEEee
Q psy4039         202 KFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHF  279 (588)
Q Consensus       202 ~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l~~  279 (588)
                      +.||+|+||.||++.+.  ++.||||++........              .....+.+|+.+++.+    +||||+++++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~--------------~~~~~~~~E~~~l~~l----~hp~iv~~~~   62 (328)
T cd05593           1 KLLGKGTFGKVILVREKASGKYYAMKILKKEVIIAK--------------DEVAHTLTESRVLKNT----RHPFLTSLKY   62 (328)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhh--------------hHHHHHHHHHHHHHhC----CCCCCcceEE
Confidence            46999999999999986  78999999853211100              0123455688888887    9999999999


Q ss_pred             eeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh
Q psy4039         280 AFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNM  358 (588)
Q Consensus       280 ~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yLH~  358 (588)
                      ++.+..                            .+++||||+ +|+|..++.... .+++.++..++.||+.||.|||+
T Consensus        63 ~~~~~~----------------------------~~~lv~Ey~~~g~L~~~l~~~~-~l~~~~~~~~~~qi~~aL~~LH~  113 (328)
T cd05593          63 SFQTKD----------------------------RLCFVMEYVNGGELFFHLSRER-VFSEDRTRFYGAEIVSALDYLHS  113 (328)
T ss_pred             EEEcCC----------------------------EEEEEEeCCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHh
Confidence            887632                            499999999 689998887654 79999999999999999999999


Q ss_pred             CCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCCcCc
Q psy4039         359 HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSD  438 (588)
Q Consensus       359 ~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksD  438 (588)
                      +||+||||||+|||++.+     +.+||+|||+++.......     .....+||+.|+|||++.+..      ++.++|
T Consensus       114 ~~ivHrDikp~NIll~~~-----~~~kL~DfG~~~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~------~~~~~D  177 (328)
T cd05593         114 GKIVYRDLKLENLMLDKD-----GHIKITDFGLCKEGITDAA-----TMKTFCGTPEYLAPEVLEDND------YGRAVD  177 (328)
T ss_pred             CCeEecccCHHHeEECCC-----CcEEEecCcCCccCCCccc-----ccccccCCcCccChhhhcCCC------CCccCC
Confidence            999999999999999987     7899999999875322111     112457999999999997654      457899


Q ss_pred             hhhHHHHHHHHhcCCCCCcccccccccc--ccccCCCCCCccHHHHHHHHHhhhhCCCCCC-----CHHHHHHHHhhhhh
Q psy4039         439 AWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVAKLLENDPSDRP-----SAELAATVCQLYLW  511 (588)
Q Consensus       439 VwS~Gvil~ElltG~~Pf~~~~~~~~~~--~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rp-----s~~e~l~~L~~~~~  511 (588)
                      ||||||++|||++|+.||..........  ......++..+++++.++|.+||+.||++||     ++.++++       
T Consensus       178 iwslGvil~elltG~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~il~-------  250 (328)
T cd05593         178 WWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEDIKFPRTLSADAKSLLSGLLIKDPNKRLGGGPDDAKEIMR-------  250 (328)
T ss_pred             ccccchHHHHHhhCCCCCCCCCHHHHHHHhccCCccCCCCCCHHHHHHHHHHcCCCHHHcCCCCCCCHHHHhc-------
Confidence            9999999999999999997643221111  1123346678899999999999999999997     8999888       


Q ss_pred             cCCccccC
Q psy4039         512 APKHWLYG  519 (588)
Q Consensus       512 ~~h~w~~~  519 (588)
                        |||+..
T Consensus       251 --h~~~~~  256 (328)
T cd05593         251 --HSFFTG  256 (328)
T ss_pred             --CCCcCC
Confidence              999864

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=100.00  E-value=5.3e-41  Score=355.48  Aligned_cols=254  Identities=23%  Similarity=0.288  Sum_probs=197.0

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      .++|++.+.||+|+||.||+|.+.  +..||||++.......               .....+.+|+.+++.+    +||
T Consensus        20 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~---------------~~~~~~~~E~~~l~~l----~h~   80 (359)
T cd07876          20 LKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQ---------------THAKRAYRELVLLKCV----NHK   80 (359)
T ss_pred             hhceEEEEEeecCCCEEEEEEEEcCCCceeEEEEecccccch---------------hHHHHHHHHHHHHHhC----CCC
Confidence            489999999999999999999886  7899999984321100               0123345688888887    999


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      ||+++++++....                      .......+|+||||++++|.+.+..   .+++..+..++.|++.|
T Consensus        81 niv~~~~~~~~~~----------------------~~~~~~~~~lv~e~~~~~l~~~~~~---~~~~~~~~~~~~qi~~~  135 (359)
T cd07876          81 NIISLLNVFTPQK----------------------SLEEFQDVYLVMELMDANLCQVIHM---ELDHERMSYLLYQMLCG  135 (359)
T ss_pred             CEeeeeeeeccCC----------------------CccccceeEEEEeCCCcCHHHHHhc---cCCHHHHHHHHHHHHHH
Confidence            9999999987532                      1112234899999999888887753   68999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||++||+||||||+|||++.+     +.+||+|||+++.......      .....||+.|+|||++.+..      
T Consensus       136 L~~LH~~~ivHrDlkp~NIl~~~~-----~~~kl~Dfg~a~~~~~~~~------~~~~~~t~~y~aPE~~~~~~------  198 (359)
T cd07876         136 IKHLHSAGIIHRDLKPSNIVVKSD-----CTLKILDFGLARTACTNFM------MTPYVVTRYYRAPEVILGMG------  198 (359)
T ss_pred             HHHHHhCCcccCCCCHHHEEECCC-----CCEEEecCCCccccccCcc------CCCCcccCCCCCchhccCCC------
Confidence            999999999999999999999987     8999999999976433211      12356899999999997654      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCccccccccc----------------------c--cccc------------------
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY----------------------E--VNAL------------------  470 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~----------------------~--~~~~------------------  470 (588)
                      ++.++|||||||++|||++|+.||.+......+                      .  ....                  
T Consensus       199 ~~~~~DiwSlG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (359)
T cd07876         199 YKENVDIWSVGCIMGELVKGSVIFQGTDHIDQWNKVIEQLGTPSAEFMNRLQPTVRNYVENRPQYPGISFEELFPDWIFP  278 (359)
T ss_pred             CCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCCCCCCcchhhhccccccc
Confidence            457899999999999999999999753110000                      0  0000                  


Q ss_pred             --CCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCcccc
Q psy4039         471 --PQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLY  518 (588)
Q Consensus       471 --~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~  518 (588)
                        .......++++++||.+||+.||++|||++|+++         |||+.
T Consensus       279 ~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~---------hp~~~  319 (359)
T cd07876         279 SESERDKLKTSQARDLLSKMLVIDPDKRISVDEALR---------HPYIT  319 (359)
T ss_pred             cccccccccchhHHHHHHHHhccCcccCCCHHHHhc---------Cchhh
Confidence              0011224678999999999999999999999999         99987

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>KOG4717|consensus

Probab=100.00  E-value=9.3e-42  Score=351.87  Aligned_cols=254  Identities=23%  Similarity=0.335  Sum_probs=214.2

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      .-|++.+.||+|-|++|-.|++-  |..||||++.+.....-               ....+-.|+.-|+.+    +|||
T Consensus        18 GLYDLekTlG~GHFAVVKLArHVFTGekVAVKviDKTKlD~~---------------st~hlfqEVRCMKLV----QHpN   78 (864)
T KOG4717|consen   18 GLYDLEKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTL---------------STGHLFQEVRCMKLV----QHPN   78 (864)
T ss_pred             eeehhhhhhcCCceehhhhhhhhcccceeEEEEecccccchh---------------hhhHHHHHHHHHHHh----cCcC
Confidence            55889999999999999999886  99999999976443321               223344588888776    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      ||+||++...+.                            .+|+|+|.. +|+|.+||-++...+++..+.+++.||+.|
T Consensus        79 iVRLYEViDTQT----------------------------KlyLiLELGD~GDl~DyImKHe~Gl~E~La~kYF~QI~~A  130 (864)
T KOG4717|consen   79 IVRLYEVIDTQT----------------------------KLYLILELGDGGDLFDYIMKHEEGLNEDLAKKYFAQIVHA  130 (864)
T ss_pred             eeeeeehhcccc----------------------------eEEEEEEecCCchHHHHHHhhhccccHHHHHHHHHHHHHH
Confidence            999999876642                            499999999 579999999887799999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      +.|+|...+|||||||+||.+-+.-    +-+||+|||++-.+..+....      +.||++.|.|||++.+..+     
T Consensus       131 I~YCHqLHVVHRDLKPENVVFFEKl----GlVKLTDFGFSNkf~PG~kL~------TsCGSLAYSAPEILLGDsY-----  195 (864)
T KOG4717|consen  131 ISYCHQLHVVHRDLKPENVVFFEKL----GLVKLTDFGFSNKFQPGKKLT------TSCGSLAYSAPEILLGDSY-----  195 (864)
T ss_pred             HHHHhhhhhhcccCCcceeEEeeec----CceEeeeccccccCCCcchhh------cccchhhccCchhhhcCcc-----
Confidence            9999999999999999999887663    899999999998877765432      6789999999999998763     


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCccccccccc--cccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhh
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY--EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYL  510 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~--~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~  510 (588)
                      +.+++||||+|||||.|+||++||.........  .......+|..++.++++||..||..||.+|-+.+++..      
T Consensus       196 DAPAVDiWSLGVILyMLVCGq~PFqeANDSETLTmImDCKYtvPshvS~eCrdLI~sMLvRdPkkRAslEeI~s------  269 (864)
T KOG4717|consen  196 DAPAVDIWSLGVILYMLVCGQPPFQEANDSETLTMIMDCKYTVPSHVSKECRDLIQSMLVRDPKKRASLEEIVS------  269 (864)
T ss_pred             CCcchhhhHHHHHHHHHHhCCCccccccchhhhhhhhcccccCchhhhHHHHHHHHHHHhcCchhhccHHHHhc------
Confidence            456799999999999999999999875433322  233445678889999999999999999999999999999      


Q ss_pred             hcCCccccCC
Q psy4039         511 WAPKHWLYGA  520 (588)
Q Consensus       511 ~~~h~w~~~~  520 (588)
                         ++|++..
T Consensus       270 ---~~Wlq~~  276 (864)
T KOG4717|consen  270 ---TSWLQAG  276 (864)
T ss_pred             ---cccccCC
Confidence               9999933

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=100.00  E-value=3.6e-41  Score=351.82  Aligned_cols=252  Identities=21%  Similarity=0.283  Sum_probs=197.0

Q ss_pred             eEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceE
Q psy4039         198 IQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVV  275 (588)
Q Consensus       198 ~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV  275 (588)
                      |++.+.||+|+||.||+|.+.  ++.||||++.+......              ...+.+.+|+.++..+.+ ++||||+
T Consensus         1 y~i~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~--------------~~~~~l~~e~~~~~~~~~-l~hp~i~   65 (324)
T cd05589           1 FRCLAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIAR--------------DEVESLMCEKRIFETANS-ERHPFLV   65 (324)
T ss_pred             CeEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhh--------------hHHHHHHHHHHHHHhccc-cCCCChh
Confidence            678899999999999999986  78999999953211100              012234456665544322 3899999


Q ss_pred             EEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy4039         276 VMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVT  354 (588)
Q Consensus       276 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~  354 (588)
                      ++++++.+..                            .+|+||||+ +++|..++...  .+++..+..++.||+.||.
T Consensus        66 ~~~~~~~~~~----------------------------~~~lv~E~~~~~~L~~~~~~~--~l~~~~~~~~~~qi~~al~  115 (324)
T cd05589          66 NLFACFQTED----------------------------HVCFVMEYAAGGDLMMHIHTD--VFSEPRAVFYAACVVLGLQ  115 (324)
T ss_pred             ceeeEEEcCC----------------------------EEEEEEcCCCCCcHHHHhhcC--CCCHHHHHHHHHHHHHHHH
Confidence            9999987632                            499999999 57998888654  7999999999999999999


Q ss_pred             HHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCC
Q psy4039         355 HLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY  434 (588)
Q Consensus       355 yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~  434 (588)
                      |||++||+||||||+|||++.+     +.+||+|||+++......     ......+||+.|||||++.+..      ++
T Consensus       116 ~lH~~~ivHrdlkp~Nill~~~-----~~~kL~Dfg~~~~~~~~~-----~~~~~~~g~~~y~aPE~~~~~~------~~  179 (324)
T cd05589         116 YLHENKIVYRDLKLDNLLLDTE-----GFVKIADFGLCKEGMGFG-----DRTSTFCGTPEFLAPEVLTETS------YT  179 (324)
T ss_pred             HHHhCCeEecCCCHHHeEECCC-----CcEEeCcccCCccCCCCC-----CcccccccCccccCHhHhcCCC------CC
Confidence            9999999999999999999988     799999999987532211     1112467999999999997654      45


Q ss_pred             CcCchhhHHHHHHHHhcCCCCCcccccccccc--ccccCCCCCCccHHHHHHHHHhhhhCCCCCC-----CHHHHHHHHh
Q psy4039         435 SKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVAKLLENDPSDRP-----SAELAATVCQ  507 (588)
Q Consensus       435 ~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~--~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rp-----s~~e~l~~L~  507 (588)
                      .++|||||||++|||++|+.||.+........  ....+..+..+++++.++|.+||+.||.+||     ++.++++   
T Consensus       180 ~~~DiwslG~il~el~~G~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~l~~---  256 (324)
T cd05589         180 RAVDWWGLGVLIYEMLVGESPFPGDDEEEVFDSIVNDEVRYPRFLSREAISIMRRLLRRNPERRLGSGEKDAEDVKK---  256 (324)
T ss_pred             cccchhhHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhhcCHhHcCCCCCCCHHHHhh---
Confidence            78999999999999999999997643221111  1122345677899999999999999999999     6788777   


Q ss_pred             hhhhcCCccccC
Q psy4039         508 LYLWAPKHWLYG  519 (588)
Q Consensus       508 ~~~~~~h~w~~~  519 (588)
                            |||++.
T Consensus       257 ------~~~f~~  262 (324)
T cd05589         257 ------QPFFRD  262 (324)
T ss_pred             ------CCCcCC
Confidence                  999864

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=100.00  E-value=2.6e-41  Score=352.46  Aligned_cols=247  Identities=19%  Similarity=0.267  Sum_probs=194.5

Q ss_pred             eeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEEee
Q psy4039         202 KFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHF  279 (588)
Q Consensus       202 ~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l~~  279 (588)
                      +.||+|+||+||+|.++  ++.||||++.+......              .....+..|+.++..+   .+||||+++++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~--------------~~~~~~~~e~~~l~~~---~~h~~iv~~~~   63 (320)
T cd05590           1 RVLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQD--------------DDVECTMTEKRILSLA---RNHPFLTQLYC   63 (320)
T ss_pred             CeeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhc--------------cHHHHHHHHHHHHHhc---cCCCchhceee
Confidence            46999999999999987  78999999853111000              0122344577777655   47999999999


Q ss_pred             eeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh
Q psy4039         280 AFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNM  358 (588)
Q Consensus       280 ~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yLH~  358 (588)
                      ++.+..                            .+|+||||+ +|+|.+++.... .+++..+..++.|++.||.|||+
T Consensus        64 ~~~~~~----------------------------~~~iv~Ey~~~g~L~~~i~~~~-~l~~~~~~~~~~ql~~~L~~lH~  114 (320)
T cd05590          64 CFQTPD----------------------------RLFFVMEFVNGGDLMFHIQKSR-RFDEARARFYAAEITSALMFLHD  114 (320)
T ss_pred             EEEcCC----------------------------EEEEEEcCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence            987632                            489999999 579999987654 79999999999999999999999


Q ss_pred             CCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCCcCc
Q psy4039         359 HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSD  438 (588)
Q Consensus       359 ~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksD  438 (588)
                      +||+||||||+|||++.+     +.+||+|||+++.......     ......||+.|+|||++.+..      ++.++|
T Consensus       115 ~~ivH~dlkp~NIli~~~-----~~~kL~DfG~~~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~------~~~~~D  178 (320)
T cd05590         115 KGIIYRDLKLDNVLLDHE-----GHCKLADFGMCKEGIFNGK-----TTSTFCGTPDYIAPEILQEML------YGPSVD  178 (320)
T ss_pred             CCeEeCCCCHHHeEECCC-----CcEEEeeCCCCeecCcCCC-----cccccccCccccCHHHHcCCC------CCCccc
Confidence            999999999999999987     7899999999875322111     112457999999999997654      457899


Q ss_pred             hhhHHHHHHHHhcCCCCCcccccccccc--ccccCCCCCCccHHHHHHHHHhhhhCCCCCCCH------HHHHHHHhhhh
Q psy4039         439 AWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSA------ELAATVCQLYL  510 (588)
Q Consensus       439 VwS~Gvil~ElltG~~Pf~~~~~~~~~~--~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~------~e~l~~L~~~~  510 (588)
                      ||||||++|||++|+.||........+.  .......+..+++++++++.+||+.||.+||++      +++++      
T Consensus       179 iwslG~il~el~~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~~~~------  252 (320)
T cd05590         179 WWAMGVLLYEMLCGHAPFEAENEDDLFEAILNDEVVYPTWLSQDAVDILKAFMTKNPTMRLGSLTLGGEEAILR------  252 (320)
T ss_pred             hhhhHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHcccCHHHCCCCCCCCCHHHHHc------
Confidence            9999999999999999997643222111  112234556789999999999999999999998      78777      


Q ss_pred             hcCCccccC
Q psy4039         511 WAPKHWLYG  519 (588)
Q Consensus       511 ~~~h~w~~~  519 (588)
                         |||+..
T Consensus       253 ---h~~f~~  258 (320)
T cd05590         253 ---HPFFKE  258 (320)
T ss_pred             ---CCCcCC
Confidence               999974

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=100.00  E-value=7.4e-41  Score=357.45  Aligned_cols=256  Identities=19%  Similarity=0.211  Sum_probs=197.1

Q ss_pred             CeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCce
Q psy4039         197 DIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNV  274 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNI  274 (588)
                      .|++.+.||+|+||+||+|++.  ++.||||++........              .....+.+|+.+++.+    +||||
T Consensus         2 ~f~~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~--------------~~~~~~~~E~~il~~l----~h~~i   63 (381)
T cd05626           2 MFVKIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNR--------------NQVAHVKAERDILAEA----DNEWV   63 (381)
T ss_pred             CceEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhh--------------HHHHHHHHHHHHHHhc----CCCCe
Confidence            6889999999999999999986  78999999953221110              0123456788999887    99999


Q ss_pred             EEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         275 VVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       275 V~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      |++++++.+..                            .+|+||||+ +|+|.+++.... .+++..+..++.||+.||
T Consensus        64 v~l~~~~~~~~----------------------------~~~lv~E~~~gg~L~~~l~~~~-~~~e~~~~~~~~qi~~aL  114 (381)
T cd05626          64 VKLYYSFQDKD----------------------------NLYFVMDYIPGGDMMSLLIRME-VFPEVLARFYIAELTLAI  114 (381)
T ss_pred             eeeEEEEecCC----------------------------EEEEEEecCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHH
Confidence            99999988632                            499999999 689999998754 799999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCcc--------------------------------
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSM--------------------------------  401 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~--------------------------------  401 (588)
                      .|||+.||+||||||+|||++.+     +.+||+|||+++........                                
T Consensus       115 ~~LH~~givHrDlKp~Nili~~~-----~~~kL~DFGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (381)
T cd05626         115 ESVHKMGFIHRDIKPDNILIDLD-----GHIKLTDFGLCTGFRWTHNSKYYQKGSHIRQDSMEPSDLWDDVSNCRCGDRL  189 (381)
T ss_pred             HHHHhCCeeecCCcHHHEEECCC-----CCEEEeeCcCCcccccccccccccccccccccccCccccccccccccccccc
Confidence            99999999999999999999987     79999999998643210000                                


Q ss_pred             ----------ccccccccccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccc------
Q psy4039         402 ----------QYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY------  465 (588)
Q Consensus       402 ----------~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~------  465 (588)
                                .........+||+.|+|||++.+..      ++.++|||||||++|||++|..||.........      
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~------~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~~~~i~~~  263 (381)
T cd05626         190 KTLEQRATKQHQRCLAHSLVGTPNYIAPEVLLRKG------YTQLCDWWSVGVILFEMLVGQPPFLAPTPTETQLKVINW  263 (381)
T ss_pred             chhhccccccccccccccccCCccccCHHHHcCCC------CCCccceeehhhHHHHHHhCCCCCcCCCHHHHHHHHHcc
Confidence                      0000012457999999999997654      457899999999999999999999764321111      


Q ss_pred             cccccCCCCCCccHHHHHHHHHhh--hhCCCCCCCHHHHHHHHhhhhhcCCccccC
Q psy4039         466 EVNALPQLNTNVPEVMRRLVAKLL--ENDPSDRPSAELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       466 ~~~~~~~~~~~~~~~l~~Li~~~L--~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~  519 (588)
                      ......+....+++++++||.+|+  ..+|..||+++++++         |||+..
T Consensus       264 ~~~~~~~~~~~~s~~~~dli~~ll~~~~~~~~R~~~~~~l~---------hp~f~~  310 (381)
T cd05626         264 ENTLHIPPQVKLSPEAVDLITKLCCSAEERLGRNGADDIKA---------HPFFSE  310 (381)
T ss_pred             ccccCCCCCCCCCHHHHHHHHHHccCcccccCCCCHHHHhc---------CcccCC
Confidence            011111122357899999999955  556667999999999         999974

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=100.00  E-value=5.2e-41  Score=354.89  Aligned_cols=254  Identities=23%  Similarity=0.269  Sum_probs=197.3

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      .++|++.+.||+|+||.||+|.+.  ++.||||.+.......               .....+.+|+.+++.+    +||
T Consensus        16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~---------------~~~~~~~~E~~~l~~l----~h~   76 (355)
T cd07874          16 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQ---------------THAKRAYRELVLMKCV----NHK   76 (355)
T ss_pred             hhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCcccCh---------------HHHHHHHHHHHHHHHh----CCC
Confidence            389999999999999999999886  7899999985321110               0123345688888887    999


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      ||+++++++....                      ........|+||||++++|.+++..   .+++..+..++.|+++|
T Consensus        77 niv~~~~~~~~~~----------------------~~~~~~~~~lv~e~~~~~l~~~~~~---~l~~~~~~~~~~qi~~a  131 (355)
T cd07874          77 NIISLLNVFTPQK----------------------SLEEFQDVYLVMELMDANLCQVIQM---ELDHERMSYLLYQMLCG  131 (355)
T ss_pred             chhceeeeeeccc----------------------cccccceeEEEhhhhcccHHHHHhh---cCCHHHHHHHHHHHHHH
Confidence            9999999987532                      1112235899999999888888754   68999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||++||+||||||+|||++.+     +.+||+|||+++.......      .....||+.|+|||++.+..      
T Consensus       132 L~~LH~~givHrDikp~Nill~~~-----~~~kl~Dfg~~~~~~~~~~------~~~~~~t~~y~aPE~~~~~~------  194 (355)
T cd07874         132 IKHLHSAGIIHRDLKPSNIVVKSD-----CTLKILDFGLARTAGTSFM------MTPYVVTRYYRAPEVILGMG------  194 (355)
T ss_pred             HHHHHhCCcccCCCChHHEEECCC-----CCEEEeeCcccccCCCccc------cCCccccCCccCHHHHcCCC------
Confidence            999999999999999999999987     7999999999986543221      11356899999999997654      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCccccccccc--------------------------------cccc-----------
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY--------------------------------EVNA-----------  469 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~--------------------------------~~~~-----------  469 (588)
                      ++.++|||||||++|||++|+.||.+......+                                ....           
T Consensus       195 ~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (355)
T cd07874         195 YKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFP  274 (355)
T ss_pred             CCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhcHHHHHHHhcCCccccccchhhccccccc
Confidence            457899999999999999999999653110000                                0000           


Q ss_pred             -cCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCcccc
Q psy4039         470 -LPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLY  518 (588)
Q Consensus       470 -~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~  518 (588)
                       ....+...+.++++||.+||+.||++|||++|+++         |||+.
T Consensus       275 ~~~~~~~~~~~~~~~li~~mL~~dP~~Rps~~ell~---------hp~~~  315 (355)
T cd07874         275 ADSEHNKLKASQARDLLSKMLVIDPAKRISVDEALQ---------HPYIN  315 (355)
T ss_pred             cccccccccchHHHHHHHHHhcCCchhcCCHHHHhc---------Ccchh
Confidence             00011224567899999999999999999999999         99996

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=100.00  E-value=2.3e-41  Score=353.91  Aligned_cols=259  Identities=20%  Similarity=0.284  Sum_probs=202.3

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||.||+|.+.  ++.||||++.......              ......+.+|+.+++.+    +|||
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~--------------~~~~~~~~~e~~i~~~~----~~~~   62 (330)
T cd05601           1 KDFDVKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLA--------------QETVSFFEEERDILSIS----NSPW   62 (330)
T ss_pred             CCceEEEEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhh--------------hhHHHHHHHHHHHHHhC----CCCC
Confidence            47999999999999999999986  7899999995321100              01223456688888776    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++++.+..                            ..++||||+ +|+|.+++......+++..+..++.|++.|
T Consensus        63 i~~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~qi~~a  114 (330)
T cd05601          63 IPQLQYAFQDKD----------------------------NLYLVMEYQPGGDLLSLLNRYEDQFDEDMAQFYLAELVLA  114 (330)
T ss_pred             CcceeeEEecCC----------------------------eEEEEECCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            999999887632                            489999999 689999998875589999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||+++|+||||||+|||++.+     +.+||+|||++.........    ......||+.|+|||++..........
T Consensus       115 L~~lH~~~i~H~Dlkp~NIll~~~-----~~~kL~Dfg~a~~~~~~~~~----~~~~~~gt~~y~aPE~~~~~~~~~~~~  185 (330)
T cd05601         115 IHSVHQMGYVHRDIKPENVLIDRT-----GHIKLADFGSAARLTANKMV----NSKLPVGTPDYIAPEVLTTMNGDGKGT  185 (330)
T ss_pred             HHHHHHCCeEcccCchHheEECCC-----CCEEeccCCCCeECCCCCce----eeecccCCccccCHHHhccccccccCC
Confidence            999999999999999999999987     89999999999876442211    111356999999999987432211122


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCccccccccccc----cccCC--CCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHH
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV----NALPQ--LNTNVPEVMRRLVAKLLENDPSDRPSAELAATVC  506 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~----~~~~~--~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L  506 (588)
                      ++.++|||||||++|||++|..||........+..    .....  ....+++++.+|+.+||. ||.+||+++++++  
T Consensus       186 ~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~ll~-~p~~R~t~~~l~~--  262 (330)
T cd05601         186 YGVECDWWSLGVIAYEMIYGRSPFHEGTSAKTYNNIMNFQRFLKFPEDPKVSSDFLDLIQSLLC-GQKERLGYEGLCC--  262 (330)
T ss_pred             CCCcceeecccceeeeeccCCCCCCCCCHHHHHHHHHcCCCccCCCCCCCCCHHHHHHHHHHcc-ChhhCCCHHHHhC--
Confidence            45789999999999999999999976432211111    11111  223578999999999998 9999999999998  


Q ss_pred             hhhhhcCCccccC
Q psy4039         507 QLYLWAPKHWLYG  519 (588)
Q Consensus       507 ~~~~~~~h~w~~~  519 (588)
                             |||+..
T Consensus       263 -------h~~~~~  268 (330)
T cd05601         263 -------HPFFSK  268 (330)
T ss_pred             -------CCCcCC
Confidence                   999974

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=100.00  E-value=2.9e-41  Score=352.54  Aligned_cols=246  Identities=22%  Similarity=0.315  Sum_probs=195.9

Q ss_pred             eeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEEee
Q psy4039         202 KFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHF  279 (588)
Q Consensus       202 ~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l~~  279 (588)
                      +.||+|+||.||++.+.  |..||+|++.......              ......+.+|+.+++.+    +||||+++++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~--------------~~~~~~~~~E~~~l~~l----~hp~i~~~~~   62 (323)
T cd05595           1 KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIA--------------KDEVAHTVTESRVLQNT----RHPFLTALKY   62 (323)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhh--------------hHHHHHHHHHHHHHHhC----CCCCCcceee
Confidence            46999999999999986  7899999985311000              00122345688888887    9999999999


Q ss_pred             eeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh
Q psy4039         280 AFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNM  358 (588)
Q Consensus       280 ~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yLH~  358 (588)
                      +|.+..                            .+|+||||+ +|+|..++.... .+++..+..++.||+.||.|||+
T Consensus        63 ~~~~~~----------------------------~~~lv~E~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH~  113 (323)
T cd05595          63 AFQTHD----------------------------RLCFVMEYANGGELFFHLSRER-VFTEERARFYGAEIVSALEYLHS  113 (323)
T ss_pred             EEecCC----------------------------EEEEEEeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence            887632                            499999999 689998887654 79999999999999999999999


Q ss_pred             CCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCCcCc
Q psy4039         359 HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSD  438 (588)
Q Consensus       359 ~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksD  438 (588)
                      +||+||||||+|||++.+     +.+||+|||+++.......     ......||+.|+|||++.+..      ++.++|
T Consensus       114 ~~ivH~Dlkp~NIll~~~-----~~~kL~Dfg~~~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~------~~~~~D  177 (323)
T cd05595         114 RDVVYRDIKLENLMLDKD-----GHIKITDFGLCKEGISDGA-----TMKTFCGTPEYLAPEVLEDND------YGRAVD  177 (323)
T ss_pred             CCeEecCCCHHHEEEcCC-----CCEEecccHHhccccCCCC-----ccccccCCcCcCCcccccCCC------CCchhc
Confidence            999999999999999987     7899999999875322111     112457999999999987654      457899


Q ss_pred             hhhHHHHHHHHhcCCCCCcccccccccc--ccccCCCCCCccHHHHHHHHHhhhhCCCCCC-----CHHHHHHHHhhhhh
Q psy4039         439 AWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVAKLLENDPSDRP-----SAELAATVCQLYLW  511 (588)
Q Consensus       439 VwS~Gvil~ElltG~~Pf~~~~~~~~~~--~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rp-----s~~e~l~~L~~~~~  511 (588)
                      ||||||++|||++|+.||..........  ......++..++++++++|.+||+.||.+||     ++.++++       
T Consensus       178 iwSlGvil~ell~g~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~l~-------  250 (323)
T cd05595         178 WWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVME-------  250 (323)
T ss_pred             hhhhHHHHHHHHhCCCCCCCCCHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHccCCHHHhCCCCCCCHHHHHc-------
Confidence            9999999999999999997643222111  1122345678899999999999999999998     8999888       


Q ss_pred             cCCccccC
Q psy4039         512 APKHWLYG  519 (588)
Q Consensus       512 ~~h~w~~~  519 (588)
                        |+|+..
T Consensus       251 --h~~~~~  256 (323)
T cd05595         251 --HRFFLS  256 (323)
T ss_pred             --CCCcCC
Confidence              999974

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=100.00  E-value=6.4e-41  Score=349.91  Aligned_cols=252  Identities=19%  Similarity=0.280  Sum_probs=197.5

Q ss_pred             CeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCce
Q psy4039         197 DIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNV  274 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNI  274 (588)
                      +|++.+.||+|+||.||+|.+.  ++.||||++.......+              ...+.+..|+.++..+   ..|++|
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~--------------~~~~~~~~e~~~l~~~---~~~~~i   63 (324)
T cd05587           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQD--------------DDVECTMVEKRVLALP---GKPPFL   63 (324)
T ss_pred             CceEEEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhhh--------------hHHHHHHHHHHHHHhc---CCCCce
Confidence            5889999999999999999987  57899999853211000              0122345677777766   245668


Q ss_pred             EEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         275 VVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       275 V~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      +++++++.+..                            .+|+||||+ +|+|.+++.... .+++..+..++.||+.||
T Consensus        64 ~~~~~~~~~~~----------------------------~~~lv~E~~~~g~L~~~~~~~~-~~~~~~~~~~~~qi~~al  114 (324)
T cd05587          64 TQLHSCFQTMD----------------------------RLYFVMEYVNGGDLMYHIQQVG-KFKEPHAVFYAAEIAIGL  114 (324)
T ss_pred             eeeEEEEEcCC----------------------------EEEEEEcCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHH
Confidence            89998887632                            499999999 689999997654 789999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN  433 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~  433 (588)
                      .|||++||+||||||+|||++.+     +.+||+|||+++......     ......+||+.|+|||++.+..      +
T Consensus       115 ~~lH~~~ivH~dlkp~Nill~~~-----~~~kL~Dfg~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~------~  178 (324)
T cd05587         115 FFLHSKGIIYRDLKLDNVMLDAE-----GHIKIADFGMCKENIFGG-----KTTRTFCGTPDYIAPEIIAYQP------Y  178 (324)
T ss_pred             HHHHHCCeEecCCCHHHeEEcCC-----CCEEEeecCcceecCCCC-----CceeeecCCccccChhhhcCCC------C
Confidence            99999999999999999999987     789999999987532211     1112467999999999997665      4


Q ss_pred             CCcCchhhHHHHHHHHhcCCCCCcccccccccc--ccccCCCCCCccHHHHHHHHHhhhhCCCCCCCH-----HHHHHHH
Q psy4039         434 YSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSA-----ELAATVC  506 (588)
Q Consensus       434 ~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~--~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~-----~e~l~~L  506 (588)
                      +.++||||+||++|||++|+.||.+......+.  ....+.++..+++++.+++.+||+.||.+|++.     +++++  
T Consensus       179 ~~~~DiwslGvil~elltG~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~~~~--  256 (324)
T cd05587         179 GKSVDWWAFGVLLYEMLAGQPPFDGEDEDELFQSIMEHNVSYPKSLSKEAVSICKGLLTKHPAKRLGCGPTGERDIRE--  256 (324)
T ss_pred             CcccchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhc--
Confidence            578999999999999999999997643221111  122334567789999999999999999999986     67777  


Q ss_pred             hhhhhcCCccccC
Q psy4039         507 QLYLWAPKHWLYG  519 (588)
Q Consensus       507 ~~~~~~~h~w~~~  519 (588)
                             |||++.
T Consensus       257 -------hp~~~~  262 (324)
T cd05587         257 -------HAFFRR  262 (324)
T ss_pred             -------CCCcCC
Confidence                   999864

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=100.00  E-value=5.6e-41  Score=357.14  Aligned_cols=260  Identities=20%  Similarity=0.302  Sum_probs=201.9

Q ss_pred             cccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCC
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPP  270 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~  270 (588)
                      +..++|++.+.||+|+||.||++.+.  ++.||+|++.+.....              ......+.+|+.+++.+    +
T Consensus        40 ~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~--------------~~~~~~~~~e~~i~~~~----~  101 (370)
T cd05621          40 MKAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIK--------------RSDSAFFWEERDIMAFA----N  101 (370)
T ss_pred             CCHHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhh--------------hhhHHHHHHHHHHHHhC----C
Confidence            34488999999999999999999997  7899999985311100              01123456788888876    9


Q ss_pred             CCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4039         271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQL  349 (588)
Q Consensus       271 HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql  349 (588)
                      ||||+++++++.+..                            .+|+||||+ +|+|.+++...  .+++..+..++.||
T Consensus       102 hp~iv~~~~~~~~~~----------------------------~~~lv~Ey~~gg~L~~~l~~~--~~~~~~~~~~~~qi  151 (370)
T cd05621         102 SPWVVQLFCAFQDDK----------------------------YLYMVMEYMPGGDLVNLMSNY--DVPEKWAKFYTAEV  151 (370)
T ss_pred             CCCEeeEEEEEEcCC----------------------------EEEEEEcCCCCCcHHHHHHhc--CCCHHHHHHHHHHH
Confidence            999999999987632                            499999999 68999999765  78999999999999


Q ss_pred             HHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCc
Q psy4039         350 LEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF  429 (588)
Q Consensus       350 ~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~  429 (588)
                      +.||+|||+++|+||||||+|||++.+     +.+||+|||+|+.........    ....+||+.|||||++.+.... 
T Consensus       152 l~aL~~LH~~~IvHrDLKp~NILl~~~-----~~~kL~DFG~a~~~~~~~~~~----~~~~~gt~~Y~aPE~~~~~~~~-  221 (370)
T cd05621         152 VLALDAIHSMGLIHRDVKPDNMLLDKH-----GHLKLADFGTCMKMDETGMVR----CDTAVGTPDYISPEVLKSQGGD-  221 (370)
T ss_pred             HHHHHHHHHCCeEecCCCHHHEEECCC-----CCEEEEecccceecccCCcee----cccCCCCcccCCHHHHhccCCC-
Confidence            999999999999999999999999987     899999999998754322111    1246799999999999765321 


Q ss_pred             cCCCCCcCchhhHHHHHHHHhcCCCCCccccccccccc----cccCCCC--CCccHHHHHHHHHhhhhCCCC--CCCHHH
Q psy4039         430 SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV----NALPQLN--TNVPEVMRRLVAKLLENDPSD--RPSAEL  501 (588)
Q Consensus       430 ~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~----~~~~~~~--~~~~~~l~~Li~~~L~~dP~~--Rps~~e  501 (588)
                       ..++.++||||+||++|||++|+.||........+..    .....++  ..++..+++++.+||..++.+  |+++++
T Consensus       222 -~~~~~~~DiwSlG~ilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~s~~~~~li~~~L~~~~~r~~R~~~~e  300 (370)
T cd05621         222 -GYYGRECDWWSVGVFLFEMLVGDTPFYADSLVGTYSKIMDHKNSLNFPEDVEISKHAKNLICAFLTDREVRLGRNGVEE  300 (370)
T ss_pred             -CCCCcccCEEeehHHHHHHHhCCCCCCCCCHHHHHHHHHhCCcccCCCCcccCCHHHHHHHHHHccCchhccCCCCHHH
Confidence             1145789999999999999999999976532221111    1111222  356899999999999855543  889999


Q ss_pred             HHHHHhhhhhcCCccccCC
Q psy4039         502 AATVCQLYLWAPKHWLYGA  520 (588)
Q Consensus       502 ~l~~L~~~~~~~h~w~~~~  520 (588)
                      +++         |||++..
T Consensus       301 ~l~---------hp~~~~~  310 (370)
T cd05621         301 IKQ---------HPFFKND  310 (370)
T ss_pred             Hhc---------CcccCCC
Confidence            998         9999753

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.2e-41  Score=355.05  Aligned_cols=256  Identities=24%  Similarity=0.348  Sum_probs=202.4

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|.+.+.||+|+||+||+|.+.  ++.||||++.......              ......+.+|+.++..+    +|||
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~--------------~~~~~~~~~e~~~l~~~----~~~~   62 (350)
T cd05573           1 DDFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIK--------------RNQIAHVRAERDILADA----DSPW   62 (350)
T ss_pred             CCceEEEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhh--------------ccHHHHHHHHHHHHHhc----CCCC
Confidence            47999999999999999999998  8999999985321100              01223456788899887    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++++.+..                            .+++||||+ +++|.+++... ..+++..+..++.|++.|
T Consensus        63 i~~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~-~~l~~~~~~~i~~qi~~a  113 (350)
T cd05573          63 IVKLYYSFQDEE----------------------------HLYLVMEYMPGGDLMNLLIRK-DVFPEETARFYIAELVLA  113 (350)
T ss_pred             ccchhhheecCC----------------------------eEEEEEcCCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHH
Confidence            999998887632                            499999999 68999999876 389999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCcc------------------------ccccccc
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSM------------------------QYSSADI  408 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~------------------------~~~~~~~  408 (588)
                      |.|||++||+||||||+|||++.+     +.+||+|||+++........                        .......
T Consensus       114 L~~LH~~giiH~Dlkp~NIll~~~-----~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (350)
T cd05573         114 LDSVHKLGFIHRDIKPDNILIDAD-----GHIKLADFGLCKKMNKAKDREYYLNDSHNLLFRDNVLVRRRDHKQRRVRAN  188 (350)
T ss_pred             HHHHHHCCeeccCCCHHHeEECCC-----CCEEeecCCCCccCcccCccccccccccccccccccccccccccccccccc
Confidence            999999999999999999999988     89999999999865442200                        0001122


Q ss_pred             cccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccccc------ccccCCCCCCccHHHH
Q psy4039         409 ELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE------VNALPQLNTNVPEVMR  482 (588)
Q Consensus       409 ~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~------~~~~~~~~~~~~~~l~  482 (588)
                      ...||+.|+|||++.+..      ++.++|||||||++|||++|+.||........+.      .....+....+++++.
T Consensus       189 ~~~gt~~y~aPE~~~~~~------~~~~~DiwSlG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~  262 (350)
T cd05573         189 STVGTPDYIAPEVLRGTP------YGLECDWWSLGVILYEMLYGFPPFYSDTLQETYNKIINWKESLRFPPDPPVSPEAI  262 (350)
T ss_pred             ccccCccccCHHHHcCCC------CCCceeeEecchhhhhhccCCCCCCCCCHHHHHHHHhccCCcccCCCCCCCCHHHH
Confidence            456999999999997764      4578999999999999999999997643221111      1111112234699999


Q ss_pred             HHHHHhhhhCCCCCCC-HHHHHHHHhhhhhcCCccccC
Q psy4039         483 RLVAKLLENDPSDRPS-AELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       483 ~Li~~~L~~dP~~Rps-~~e~l~~L~~~~~~~h~w~~~  519 (588)
                      ++|.+||. ||.+||+ ++++++         |||++.
T Consensus       263 ~li~~ll~-dp~~R~~s~~~ll~---------hp~~~~  290 (350)
T cd05573         263 DLICRLLC-DPEDRLGSFEEIKS---------HPFFKG  290 (350)
T ss_pred             HHHHHHcc-ChhhcCCCHHHHhc---------CCCcCC
Confidence            99999997 9999999 999998         999974

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=100.00  E-value=1.3e-40  Score=345.66  Aligned_cols=251  Identities=24%  Similarity=0.304  Sum_probs=189.5

Q ss_pred             eeeecccCceeEEEEEEC----CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEE
Q psy4039         201 GKFIAKGTNAVVYEATFR----GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVV  276 (588)
Q Consensus       201 ~~~IG~G~fG~Vy~a~~~----g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~  276 (588)
                      +++||+|+||+||+|.+.    ++.||||.+....                   ......+|+.+++.+    +||||++
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~-------------------~~~~~~~E~~~l~~l----~h~niv~   62 (317)
T cd07868           6 GCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTG-------------------ISMSACREIALLREL----KHPNVIS   62 (317)
T ss_pred             ccccccCCCeEEEEEEEccCCCCceEEEEEECCCC-------------------CcHHHHHHHHHHHhc----CCCCCcc
Confidence            468999999999999975    5789999984321                   112345699999987    9999999


Q ss_pred             EeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHh--------cCCCCHHHHHHHHHH
Q psy4039         277 MHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRER--------CAQLSMHERVLLFTQ  348 (588)
Q Consensus       277 l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~--------~~~l~~~~~~~i~~q  348 (588)
                      +++++.+..                          ...++++|||++++|.+++...        ...+++..+..++.|
T Consensus        63 ~~~~~~~~~--------------------------~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~q  116 (317)
T cd07868          63 LQKVFLSHA--------------------------DRKVWLLFDYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQ  116 (317)
T ss_pred             eeeeEecCC--------------------------CcEEEEEEeccCCCHHHHHHhcccccccCCcccCCHHHHHHHHHH
Confidence            999886531                          1248999999999999988642        125899999999999


Q ss_pred             HHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCC
Q psy4039         349 LLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGL  428 (588)
Q Consensus       349 l~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~  428 (588)
                      |+.||.|||++||+||||||+|||++.+.+. .+.+||+|||+|+........  ........||+.|+|||++.+... 
T Consensus       117 i~~al~~LH~~~ivHrDlkp~Nil~~~~~~~-~~~~kl~DfG~a~~~~~~~~~--~~~~~~~~~t~~y~aPE~~~~~~~-  192 (317)
T cd07868         117 ILDGIHYLHANWVLHRDLKPANILVMGEGPE-RGRVKIADMGFARLFNSPLKP--LADLDPVVVTFWYRAPELLLGARH-  192 (317)
T ss_pred             HHHHHHHHHhCCEEcCCCCHHHEEEecCCCC-cCcEEEeecCceeccCCCCcc--ccccCCccccccccCCHHHcCCCC-
Confidence            9999999999999999999999999643222 278999999999876542211  111124678999999999976431 


Q ss_pred             ccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccc------------------------ccc-cccC------------
Q psy4039         429 FSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD------------------------YEV-NALP------------  471 (588)
Q Consensus       429 ~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~------------------------~~~-~~~~------------  471 (588)
                          ++.++||||+||++|||++|++||........                        +.. ...+            
T Consensus       193 ----~~~~~DiwslG~il~el~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (317)
T cd07868         193 ----YTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRN  268 (317)
T ss_pred             ----cCchhhHHHHHHHHHHHHhCCCCccCCcccccccccccHHHHHHHHHhcCCCChHHhHHHhhccchhhhhhhhhcc
Confidence                45679999999999999999999964211000                        000 0000            


Q ss_pred             ------------CCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccc
Q psy4039         472 ------------QLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWL  517 (588)
Q Consensus       472 ------------~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~  517 (588)
                                  ......+.++.+||.+||+.||.+|||++|+++         |||+
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~R~t~~e~l~---------hp~f  317 (317)
T cd07868         269 TYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQAMQ---------DPYF  317 (317)
T ss_pred             ccCcccccchHHhcCCCCChHHHHHHHHHhccCcccCCCHHHHhc---------CCCC
Confidence                        000123456899999999999999999999999         9996

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=100.00  E-value=7.3e-41  Score=349.31  Aligned_cols=252  Identities=19%  Similarity=0.267  Sum_probs=197.9

Q ss_pred             CeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCce
Q psy4039         197 DIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNV  274 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNI  274 (588)
                      +|++.+.||+|+||.||+|.+.  +..||||++.+......              ........|..++..+   ..||+|
T Consensus         1 df~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~--------------~~~~~~~~e~~~l~~~---~~~~~i   63 (323)
T cd05616           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQD--------------DDVECTMVEKRVLALS---GKPPFL   63 (323)
T ss_pred             CceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhh--------------hHHHHHHHHHHHHHhc---cCCCeE
Confidence            5889999999999999999987  67999999853211000              0112234466666655   478999


Q ss_pred             EEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         275 VVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       275 V~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      +++++++.+..                            .+|+||||+ +|+|.+++.... .+++.++..++.|++.||
T Consensus        64 ~~~~~~~~~~~----------------------------~~~lv~E~~~~g~L~~~~~~~~-~~~~~~~~~~~~qi~~aL  114 (323)
T cd05616          64 TQLHSCFQTMD----------------------------RLYFVMEYVNGGDLMYQIQQVG-RFKEPHAVFYAAEIAIGL  114 (323)
T ss_pred             eeEEEEEecCC----------------------------EEEEEEcCCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHH
Confidence            99999887632                            499999999 689999987654 799999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN  433 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~  433 (588)
                      .|||++||+||||||+|||++.+     +.+||+|||+++.......     .....+||+.|+|||++.+..      +
T Consensus       115 ~~LH~~~ivHrDlkp~Nill~~~-----~~~kL~DfG~~~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~------~  178 (323)
T cd05616         115 FFLHSKGIIYRDLKLDNVMLDSE-----GHIKIADFGMCKENMWDGV-----TTKTFCGTPDYIAPEIIAYQP------Y  178 (323)
T ss_pred             HHHHHCCEEecCCCHHHeEECCC-----CcEEEccCCCceecCCCCC-----ccccCCCChhhcCHHHhcCCC------C
Confidence            99999999999999999999988     7999999999975432111     112467999999999997665      4


Q ss_pred             CCcCchhhHHHHHHHHhcCCCCCcccccccccc--ccccCCCCCCccHHHHHHHHHhhhhCCCCCCCH-----HHHHHHH
Q psy4039         434 YSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSA-----ELAATVC  506 (588)
Q Consensus       434 ~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~--~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~-----~e~l~~L  506 (588)
                      +.++|||||||++|||++|+.||.+........  ......++..+++++.+++.+||+.||++|++.     .++++  
T Consensus       179 ~~~~DiwSlGvil~elltg~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~l~~~p~~R~~~~~~~~~~i~~--  256 (323)
T cd05616         179 GKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHNVAYPKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKE--  256 (323)
T ss_pred             CCccchhchhHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHcccCHHhcCCCCCCCHHHHhc--
Confidence            578999999999999999999997643222111  112234567789999999999999999999984     67666  


Q ss_pred             hhhhhcCCccccC
Q psy4039         507 QLYLWAPKHWLYG  519 (588)
Q Consensus       507 ~~~~~~~h~w~~~  519 (588)
                             |||++.
T Consensus       257 -------h~~~~~  262 (323)
T cd05616         257 -------HAFFRY  262 (323)
T ss_pred             -------CCCcCC
Confidence                   999863

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=100.00  E-value=5.5e-41  Score=349.39  Aligned_cols=247  Identities=21%  Similarity=0.329  Sum_probs=192.7

Q ss_pred             eeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEEee
Q psy4039         202 KFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHF  279 (588)
Q Consensus       202 ~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l~~  279 (588)
                      +.||+|+||.||+|.+.  ++.||||++.......              ....+....|..++..+   ..||||+++++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~--------------~~~~~~~~~e~~~l~~~---~~hp~i~~~~~   63 (316)
T cd05592           1 KVLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLE--------------DDDVECTMVERRVLALA---WEHPFLTHLFC   63 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhh--------------hhhHHHHHHHHHHHHhc---cCCCCccceee
Confidence            36999999999999987  6789999985311100              00112233455555543   48999999999


Q ss_pred             eeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh
Q psy4039         280 AFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNM  358 (588)
Q Consensus       280 ~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yLH~  358 (588)
                      ++.+.                            ..+|+||||+ +|+|..++.... .+++..+..++.|++.||.|||+
T Consensus        64 ~~~~~----------------------------~~~~lv~e~~~gg~L~~~~~~~~-~~~~~~~~~~~~qi~~al~~LH~  114 (316)
T cd05592          64 TFQTK----------------------------EHLFFVMEYLNGGDLMFHIQSSG-RFDEARARFYAAEIICGLQFLHK  114 (316)
T ss_pred             EEEcC----------------------------CEEEEEEcCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence            88763                            1499999999 689999987654 79999999999999999999999


Q ss_pred             CCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCCcCc
Q psy4039         359 HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSD  438 (588)
Q Consensus       359 ~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksD  438 (588)
                      ++|+||||||+|||++.+     +.+||+|||+|+.......     .....+||+.|+|||++.+..      ++.++|
T Consensus       115 ~~ivH~dlkp~Nill~~~-----~~~kL~Dfg~a~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~------~~~~~D  178 (316)
T cd05592         115 KGIIYRDLKLDNVLLDKD-----GHIKIADFGMCKENMNGEG-----KASTFCGTPDYIAPEILKGQK------YNESVD  178 (316)
T ss_pred             CCEEeCCCCHHHeEECCC-----CCEEEccCcCCeECCCCCC-----ccccccCCccccCHHHHcCCC------CCCccc
Confidence            999999999999999987     7899999999976433211     112467999999999997654      457899


Q ss_pred             hhhHHHHHHHHhcCCCCCcccccccccc--ccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHH-HHHHHHhhhhhcCCc
Q psy4039         439 AWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE-LAATVCQLYLWAPKH  515 (588)
Q Consensus       439 VwS~Gvil~ElltG~~Pf~~~~~~~~~~--~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~-e~l~~L~~~~~~~h~  515 (588)
                      ||||||++|||++|..||.+......+.  ....+.++..++.++.+++.+||+.||.+||++. ++++         ||
T Consensus       179 vwslG~il~ell~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ll~~~l~~~P~~R~~~~~~l~~---------h~  249 (316)
T cd05592         179 WWSFGVLLYEMLIGQSPFHGEDEDELFDSILNDRPHFPRWISKEAKDCLSKLFERDPTKRLGVDGDIRQ---------HP  249 (316)
T ss_pred             chhHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHccCCHHHcCCChHHHHc---------Cc
Confidence            9999999999999999997643221111  1233456677899999999999999999999875 6666         99


Q ss_pred             cccC
Q psy4039         516 WLYG  519 (588)
Q Consensus       516 w~~~  519 (588)
                      |+..
T Consensus       250 ~~~~  253 (316)
T cd05592         250 FFRG  253 (316)
T ss_pred             ccCC
Confidence            9863

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=100.00  E-value=9.8e-41  Score=345.74  Aligned_cols=254  Identities=21%  Similarity=0.294  Sum_probs=200.9

Q ss_pred             ccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCC
Q psy4039         194 KVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPH  271 (588)
Q Consensus       194 ~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~H  271 (588)
                      ..++|.+.+.||+|+||.||+|++.  +..||||.+.......                ....+.+|+.+++.+    +|
T Consensus         4 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~----------------~~~~~~~E~~~l~~l----~h   63 (309)
T cd07872           4 KMETYIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEG----------------APCTAIREVSLLKDL----KH   63 (309)
T ss_pred             CCCceEEEEEecccCCEEEEEEEecCCCCeEEEEEeeccccCC----------------cchhHHHHHHHHHhC----CC
Confidence            3478999999999999999999986  7789999985321110                122345689999887    99


Q ss_pred             CceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4039         272 PNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLE  351 (588)
Q Consensus       272 pNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~  351 (588)
                      |||+++++++.+..                            ..++||||++++|.+++......+++..+..++.|++.
T Consensus        64 ~~iv~~~~~~~~~~----------------------------~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~  115 (309)
T cd07872          64 ANIVTLHDIVHTDK----------------------------SLTLVFEYLDKDLKQYMDDCGNIMSMHNVKIFLYQILR  115 (309)
T ss_pred             CCcceEEEEEeeCC----------------------------eEEEEEeCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence            99999999987632                            48999999998999999876657899999999999999


Q ss_pred             HHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccC
Q psy4039         352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF  431 (588)
Q Consensus       352 gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~  431 (588)
                      ||.|||++||+||||||+|||++.+     +.+||+|||+++........     .....||+.|+|||++.+...    
T Consensus       116 aL~~lH~~~ivH~dlkp~Nill~~~-----~~~kl~Dfg~~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~----  181 (309)
T cd07872         116 GLAYCHRRKVLHRDLKPQNLLINER-----GELKLADFGLARAKSVPTKT-----YSNEVVTLWYRPPDVLLGSSE----  181 (309)
T ss_pred             HHHHHHHCCeecCCCCHHHEEECCC-----CCEEECccccceecCCCccc-----cccccccccccCCHHHhCCCC----
Confidence            9999999999999999999999987     78999999999764332111     113468999999999865431    


Q ss_pred             CCCCcCchhhHHHHHHHHhcCCCCCccccccccc------------------------cccccC--------CCCCCccH
Q psy4039         432 VNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY------------------------EVNALP--------QLNTNVPE  479 (588)
Q Consensus       432 ~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~------------------------~~~~~~--------~~~~~~~~  479 (588)
                       ++.++||||+||++|||++|+.||.+.......                        .....+        .....+++
T Consensus       182 -~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (309)
T cd07872         182 -YSTQIDMWGVGCIFFEMASGRPLFPGSTVEDELHLIFRLLGTPTEETWPGISSNDEFKNYNFPKYKPQPLINHAPRLDT  260 (309)
T ss_pred             -CCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHhhhcchhhhhhhhcCccCCCchhhhccCCCH
Confidence             456899999999999999999999653211000                        000000        11135788


Q ss_pred             HHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccC
Q psy4039         480 VMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       480 ~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~  519 (588)
                      ++++||.+||+.||.+|||++++++         |||++.
T Consensus       261 ~~~~li~~~L~~dp~~R~t~~e~l~---------h~~~~~  291 (309)
T cd07872         261 EGIELLTKFLQYESKKRISAEEAMK---------HAYFRS  291 (309)
T ss_pred             HHHHHHHHhccCChhhCCCHHHHhc---------Chhhhh
Confidence            9999999999999999999999999         999984

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=6.2e-41  Score=349.97  Aligned_cols=247  Identities=22%  Similarity=0.359  Sum_probs=196.5

Q ss_pred             eeecccCceeEEEEEEC-----CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEE
Q psy4039         202 KFIAKGTNAVVYEATFR-----GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVV  276 (588)
Q Consensus       202 ~~IG~G~fG~Vy~a~~~-----g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~  276 (588)
                      +.||+|+||.||++...     ++.||||++.......+             ......+.+|+.+++.+    +||||++
T Consensus         2 ~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~-------------~~~~~~~~~E~~il~~l----~hp~iv~   64 (323)
T cd05584           2 KVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRN-------------QKDTAHTKAERNILEAV----KHPFIVD   64 (323)
T ss_pred             ceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhh-------------hhhHHHHHHHHHHHHhC----CCCchhc
Confidence            57999999999999863     78899999853211100             00123345789999887    9999999


Q ss_pred             EeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q psy4039         277 MHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTH  355 (588)
Q Consensus       277 l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~y  355 (588)
                      ++++|.+..                            .+|+||||+ +++|.+++...+ .+++..+..++.|++.||.|
T Consensus        65 ~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~qi~~~l~~  115 (323)
T cd05584          65 LIYAFQTGG----------------------------KLYLILEYLSGGELFMHLEREG-IFMEDTACFYLSEISLALEH  115 (323)
T ss_pred             eeeEEecCC----------------------------eEEEEEeCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHHHHHH
Confidence            999987631                            489999999 579999997654 78999999999999999999


Q ss_pred             HHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCC
Q psy4039         356 LNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS  435 (588)
Q Consensus       356 LH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~  435 (588)
                      ||++||+||||||+|||++.+     +.+||+|||+++.......     ......||+.|+|||++.+..      ++.
T Consensus       116 lH~~~ivH~dlkp~Nil~~~~-----~~~kl~Dfg~~~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~------~~~  179 (323)
T cd05584         116 LHQQGIIYRDLKPENILLDAQ-----GHVKLTDFGLCKESIHEGT-----VTHTFCGTIEYMAPEILMRSG------HGK  179 (323)
T ss_pred             HHHCCeecCCCCHHHeEECCC-----CCEEEeeCcCCeecccCCC-----cccccCCCccccChhhccCCC------CCC
Confidence            999999999999999999987     8999999999875432111     112457999999999987654      457


Q ss_pred             cCchhhHHHHHHHHhcCCCCCccccccccccc--cccCCCCCCccHHHHHHHHHhhhhCCCCCC-----CHHHHHHHHhh
Q psy4039         436 KSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV--NALPQLNTNVPEVMRRLVAKLLENDPSDRP-----SAELAATVCQL  508 (588)
Q Consensus       436 ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~--~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rp-----s~~e~l~~L~~  508 (588)
                      ++|||||||++|||++|+.||...........  .....++..+++++.++|.+||+.||++||     +++++++    
T Consensus       180 ~~DiwslG~il~ell~G~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~l~~----  255 (323)
T cd05584         180 AVDWWSLGALMYDMLTGAPPFTAENRKKTIDKILKGKLNLPPYLTPEARDLLKKLLKRNPSSRLGAGPGDAAEVQS----  255 (323)
T ss_pred             cceecccHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHcccCHhHcCCCCCCCHHHHhc----
Confidence            89999999999999999999976432221111  122345677899999999999999999999     8999888    


Q ss_pred             hhhcCCccccC
Q psy4039         509 YLWAPKHWLYG  519 (588)
Q Consensus       509 ~~~~~h~w~~~  519 (588)
                           |||+..
T Consensus       256 -----h~~~~~  261 (323)
T cd05584         256 -----HPFFRH  261 (323)
T ss_pred             -----CCCcCC
Confidence                 999864

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=100.00  E-value=5.7e-41  Score=349.80  Aligned_cols=247  Identities=19%  Similarity=0.282  Sum_probs=194.8

Q ss_pred             eeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEEee
Q psy4039         202 KFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHF  279 (588)
Q Consensus       202 ~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l~~  279 (588)
                      +.||+|+||.||+|.+.  ++.||||++........              .....+..|..++..+   .+||||+++++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~--------------~~~~~~~~e~~il~~~---~~hp~i~~~~~   63 (321)
T cd05591           1 KVLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQD--------------DDVDCTMTEKRILALA---AKHPFLTALHC   63 (321)
T ss_pred             CccccCCCeEEEEEEECCCCCEEEEEEEeHHHhhhh--------------hHHHHHHHHHHHHHhc---cCCCCccceee
Confidence            46999999999999987  67999999853211000              0122344577777655   48999999999


Q ss_pred             eeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh
Q psy4039         280 AFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNM  358 (588)
Q Consensus       280 ~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yLH~  358 (588)
                      ++.+..                            .+|+||||+ +|+|..++.... .+++..+..++.||+.||.|||+
T Consensus        64 ~~~~~~----------------------------~~~lv~E~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH~  114 (321)
T cd05591          64 CFQTKD----------------------------RLFFVMEYVNGGDLMFQIQRSR-KFDEPRSRFYAAEVTLALMFLHR  114 (321)
T ss_pred             EEEcCC----------------------------eEEEEEeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence            987632                            489999999 579999987654 79999999999999999999999


Q ss_pred             CCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCCcCc
Q psy4039         359 HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSD  438 (588)
Q Consensus       359 ~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksD  438 (588)
                      +||+||||||+|||++.+     +.+||+|||+++.......     ......||+.|+|||++.+..      ++.++|
T Consensus       115 ~~ivHrDikp~Nill~~~-----~~~kL~Dfg~~~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~------~~~~~D  178 (321)
T cd05591         115 HGVIYRDLKLDNILLDAE-----GHCKLADFGMCKEGILNGV-----TTTTFCGTPDYIAPEILQELE------YGPSVD  178 (321)
T ss_pred             CCeeccCCCHHHeEECCC-----CCEEEeecccceecccCCc-----cccccccCccccCHHHHcCCC------CCCccc
Confidence            999999999999999987     8999999999875432111     112457999999999997654      457899


Q ss_pred             hhhHHHHHHHHhcCCCCCccccccccccc--cccCCCCCCccHHHHHHHHHhhhhCCCCCC-------CHHHHHHHHhhh
Q psy4039         439 AWTAGTVAYEIFGHDNPFYQSARNTDYEV--NALPQLNTNVPEVMRRLVAKLLENDPSDRP-------SAELAATVCQLY  509 (588)
Q Consensus       439 VwS~Gvil~ElltG~~Pf~~~~~~~~~~~--~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rp-------s~~e~l~~L~~~  509 (588)
                      ||||||++|||++|+.||........+..  ......+..+++++.+++.+||+.||++||       +++++++     
T Consensus       179 vwslG~il~el~tg~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~ll~~~L~~dp~~R~~~~~~~~~~~~~~~-----  253 (321)
T cd05591         179 WWALGVLMYEMMAGQPPFEADNEDDLFESILHDDVLYPVWLSKEAVSILKAFMTKNPNKRLGCVASQGGEDAIKQ-----  253 (321)
T ss_pred             eechhHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhccCHHHcCCCCCCCCCHHHHhc-----
Confidence            99999999999999999976432222211  112234556889999999999999999999       8899888     


Q ss_pred             hhcCCccccC
Q psy4039         510 LWAPKHWLYG  519 (588)
Q Consensus       510 ~~~~h~w~~~  519 (588)
                          |||+..
T Consensus       254 ----hp~~~~  259 (321)
T cd05591         254 ----HPFFKE  259 (321)
T ss_pred             ----CCccCC
Confidence                999964

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=100.00  E-value=5.3e-41  Score=349.52  Aligned_cols=247  Identities=21%  Similarity=0.303  Sum_probs=194.2

Q ss_pred             eeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEEee
Q psy4039         202 KFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHF  279 (588)
Q Consensus       202 ~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l~~  279 (588)
                      +.||+|+||.||+|.+.  +..||||++.......+              ........|..++...   .+||||+++++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~--------------~~~~~~~~e~~~l~~~---~~~~~i~~~~~   63 (316)
T cd05620           1 KVLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLID--------------DDVECTMVEKRVLALA---WENPFLTHLYC   63 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhc--------------chHHHHHHHHHHHHhc---cCCCCccCeeE
Confidence            46999999999999997  78999999853111000              0112234466666544   48999999999


Q ss_pred             eeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh
Q psy4039         280 AFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNM  358 (588)
Q Consensus       280 ~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yLH~  358 (588)
                      ++.+..                            .+|+||||+ +|+|..++..+. .+++.++..++.|+++||+|||+
T Consensus        64 ~~~~~~----------------------------~~~lv~E~~~~g~L~~~i~~~~-~~~~~~~~~~~~qi~~~l~~lH~  114 (316)
T cd05620          64 TFQTKE----------------------------HLFFVMEFLNGGDLMFHIQDKG-RFDLYRATFYAAEIVCGLQFLHS  114 (316)
T ss_pred             EEEeCC----------------------------EEEEEECCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence            987632                            599999999 579999987754 79999999999999999999999


Q ss_pred             CCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCCcCc
Q psy4039         359 HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSD  438 (588)
Q Consensus       359 ~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksD  438 (588)
                      +||+||||||+|||++.+     +.+||+|||+++.......     .....+||+.|+|||++.+..      ++.++|
T Consensus       115 ~~ivHrDlkp~Nil~~~~-----~~~kl~Dfg~~~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~------~~~~~D  178 (316)
T cd05620         115 KGIIYRDLKLDNVMLDRD-----GHIKIADFGMCKENVFGDN-----RASTFCGTPDYIAPEILQGLK------YTFSVD  178 (316)
T ss_pred             CCeEecCCCHHHeEECCC-----CCEEeCccCCCeecccCCC-----ceeccCCCcCccCHHHHcCCC------CCcccc
Confidence            999999999999999987     7899999999875322111     112467999999999997654      457899


Q ss_pred             hhhHHHHHHHHhcCCCCCcccccccccc--ccccCCCCCCccHHHHHHHHHhhhhCCCCCCCH-HHHHHHHhhhhhcCCc
Q psy4039         439 AWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSA-ELAATVCQLYLWAPKH  515 (588)
Q Consensus       439 VwS~Gvil~ElltG~~Pf~~~~~~~~~~--~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~-~e~l~~L~~~~~~~h~  515 (588)
                      |||+||++|||++|..||.+........  ....+.++..++.++++++.+||+.||++||++ +++++         ||
T Consensus       179 iwslGvil~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~~~~~~~~~---------h~  249 (316)
T cd05620         179 WWSFGVLLYEMLIGQSPFHGDDEDELFESIRVDTPHYPRWITKESKDILEKLFERDPTRRLGVVGNIRG---------HP  249 (316)
T ss_pred             hhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHccCCHHHcCCChHHHHc---------CC
Confidence            9999999999999999997643222111  122345566789999999999999999999997 57777         99


Q ss_pred             cccC
Q psy4039         516 WLYG  519 (588)
Q Consensus       516 w~~~  519 (588)
                      |++.
T Consensus       250 ~f~~  253 (316)
T cd05620         250 FFKT  253 (316)
T ss_pred             CcCC
Confidence            9974

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>KOG0604|consensus

Probab=100.00  E-value=7.8e-42  Score=333.53  Aligned_cols=251  Identities=24%  Similarity=0.378  Sum_probs=203.6

Q ss_pred             CCeEEe-eeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         196 DDIQIG-KFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       196 ~~~~~~-~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      ++|.+. ++||-|-.|.|..|.++  ++.+|+|++.                      ......+|+++.-..   ..||
T Consensus        61 edY~is~qvLG~GinGkV~~C~~k~T~ekfALKvL~----------------------Ds~KARrEVeLHw~~---s~h~  115 (400)
T KOG0604|consen   61 EDYSISWQVLGAGINGKVVQCVHKRTQEKFALKVLL----------------------DSPKARREVELHWMA---SGHP  115 (400)
T ss_pred             hhheehhhhhccccCCceEEEEeccchhhhHHHHHh----------------------cCHHHHhHhhhhhhh---cCCC
Confidence            777775 68999999999999998  8899999984                      222334566654433   4899


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc-CCCCHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC-AQLSMHERVLLFTQLL  350 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~-~~l~~~~~~~i~~ql~  350 (588)
                      |||.++++|+.                        .+.....+.+|||.+ +|.|.+.+.+++ ..++++++..|++||+
T Consensus       116 ~iV~IidVyeN------------------------s~~~rkcLLiVmE~meGGeLfsriq~~g~~afTErea~eI~~qI~  171 (400)
T KOG0604|consen  116 HIVSIIDVYEN------------------------SYQGRKCLLIVMECMEGGELFSRIQDRGDQAFTEREASEIMKQIG  171 (400)
T ss_pred             ceEEeehhhhh------------------------hccCceeeEeeeecccchHHHHHHHHcccccchHHHHHHHHHHHH
Confidence            99999999987                        233355799999999 689999999875 3599999999999999


Q ss_pred             HHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCcc
Q psy4039         351 EGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFS  430 (588)
Q Consensus       351 ~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~  430 (588)
                      .|+.|||+.+|.||||||+|+|......+  ..+||+|||+|+.......+      .+.+-||.|.|||++....    
T Consensus       172 ~Av~~lH~~nIAHRDlKpENLLyt~t~~n--a~lKLtDfGFAK~t~~~~~L------~TPc~TPyYvaPevlg~eK----  239 (400)
T KOG0604|consen  172 LAVRYLHSMNIAHRDLKPENLLYTTTSPN--APLKLTDFGFAKETQEPGDL------MTPCFTPYYVAPEVLGPEK----  239 (400)
T ss_pred             HHHHHHHhcchhhccCChhheeeecCCCC--cceEecccccccccCCCccc------cCCcccccccCHHHhCchh----
Confidence            99999999999999999999999877544  47999999999886542222      2567899999999996654    


Q ss_pred             CCCCCcCchhhHHHHHHHHhcCCCCCccccc------------cccccccccCCCCCCccHHHHHHHHHhhhhCCCCCCC
Q psy4039         431 FVNYSKSDAWTAGTVAYEIFGHDNPFYQSAR------------NTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS  498 (588)
Q Consensus       431 ~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~------------~~~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps  498 (588)
                        +...+|+||+||++|-|+||.+||+....            ...|.  ...+-|..+|++++|+|+.+|..+|.+|.|
T Consensus       240 --ydkscdmwSlgVimYIlLCGyPPFYS~hg~aispgMk~rI~~gqy~--FP~pEWs~VSe~aKdlIR~LLkt~PteRlT  315 (400)
T KOG0604|consen  240 --YDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKRRIRTGQYE--FPEPEWSCVSEAAKDLIRKLLKTEPTERLT  315 (400)
T ss_pred             --cCCCCCccchhHHHHHhhcCCCcccccCCccCChhHHhHhhccCcc--CCChhHhHHHHHHHHHHHHHhcCCchhhee
Confidence              44569999999999999999999987421            11121  112335678999999999999999999999


Q ss_pred             HHHHHHHHhhhhhcCCccccCC
Q psy4039         499 AELAATVCQLYLWAPKHWLYGA  520 (588)
Q Consensus       499 ~~e~l~~L~~~~~~~h~w~~~~  520 (588)
                      ++++++         |||+...
T Consensus       316 I~~~m~---------hpwi~~~  328 (400)
T KOG0604|consen  316 IEEVMD---------HPWINQY  328 (400)
T ss_pred             HHHhhc---------Cchhccc
Confidence            999999         9999833

>KOG0594|consensus

Probab=100.00  E-value=9e-41  Score=336.14  Aligned_cols=261  Identities=26%  Similarity=0.322  Sum_probs=205.8

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      ...|+..++||+|+||+||+|+.+  |+.||+|+++....            .|..   -....+|+.+++.+    +|+
T Consensus        10 ~~~~~~~eklGeGtyg~Vykar~~~~g~~VALKkirl~~~------------~EG~---P~taiREisllk~L----~~~   70 (323)
T KOG0594|consen   10 MFDYEKVEKLGEGTYGVVYKARSKRTGKFVALKKIRLEFE------------EEGV---PSTAIREISLLKRL----SHA   70 (323)
T ss_pred             HHHHHHHHHhCCCCceEEEEEEEecCCCEEEEEEEecccc------------ccCC---CchhhHHHHHHHHh----CCC
Confidence            466788888999999999999997  88999999964221            0111   22336799999998    999


Q ss_pred             c-eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhc---CCCCHHHHHHHHHH
Q psy4039         273 N-VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERC---AQLSMHERVLLFTQ  348 (588)
Q Consensus       273 N-IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~---~~l~~~~~~~i~~q  348 (588)
                      | ||.|++++.+...                      ......+++|+||+.-+|.+++....   ..++...+..+++|
T Consensus        71 ~~iv~L~dv~~~~~~----------------------~~~~~~l~lvfe~~d~DL~~ymd~~~~~~~g~~~~~ik~~m~Q  128 (323)
T KOG0594|consen   71 NHIVRLHDVIHTSNN----------------------HRGIGKLYLVFEFLDRDLKKYMDSLPKKPQGLPPRLIKSFMRQ  128 (323)
T ss_pred             cceEEEEeeeeeccc----------------------ccccceEEEEEEeecccHHHHHHhccccccCCCHHHHHHHHHH
Confidence            9 9999999987531                      12234699999999999999999865   36888999999999


Q ss_pred             HHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCC
Q psy4039         349 LLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGL  428 (588)
Q Consensus       349 l~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~  428 (588)
                      |+.||+|||+++|+||||||.||||+++     +.+||+|||+|+...-.... +    +..++|..|.|||++.+... 
T Consensus       129 ll~gl~~~H~~~IlHRDLKPQNlLi~~~-----G~lKlaDFGlAra~~ip~~~-y----t~evvTlWYRaPEvLlGs~~-  197 (323)
T KOG0594|consen  129 LLRGLAFLHSHGILHRDLKPQNLLISSS-----GVLKLADFGLARAFSIPMRT-Y----TPEVVTLWYRAPEVLLGSTS-  197 (323)
T ss_pred             HHHHHHHHHhCCeecccCCcceEEECCC-----CcEeeeccchHHHhcCCccc-c----cccEEEeeccCHHHhcCCCc-
Confidence            9999999999999999999999999987     89999999999976532221 2    24678999999999988752 


Q ss_pred             ccCCCCCcCchhhHHHHHHHHhcCCCCCccccccc------------------------cccc--cccC------CCCCC
Q psy4039         429 FSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNT------------------------DYEV--NALP------QLNTN  476 (588)
Q Consensus       429 ~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~------------------------~~~~--~~~~------~~~~~  476 (588)
                          +++..||||+|||+.||+++++-|.+.....                        .+..  ..+.      ...+.
T Consensus       198 ----Ys~~vDiWs~GcIfaEm~~~~~LFpG~se~~ql~~If~~lGtP~e~~Wp~v~~~~~~k~~f~~~~~~~~l~~~~~~  273 (323)
T KOG0594|consen  198 ----YSTSVDIWSLGCIFAEMFTRRPLFPGDSEIDQLFRIFRLLGTPNEKDWPGVSSLPDYKAPFPKWPGPKDLSSILPK  273 (323)
T ss_pred             ----CCCCcchHhHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHcCCCCccCCCCccccccccccCcCCCCccchHHhccc
Confidence                5678999999999999999999997731100                        1110  0000      00012


Q ss_pred             ccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccCC
Q psy4039         477 VPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGA  520 (588)
Q Consensus       477 ~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~  520 (588)
                      ..++..+++.+||+.+|.+|.|++.+++         |||+...
T Consensus       274 ~~~~~~dll~~~L~y~p~~R~Sa~~al~---------h~yf~~~  308 (323)
T KOG0594|consen  274 LDPDGIELLSKLLQYDPAKRISAKGALT---------HPYFSEL  308 (323)
T ss_pred             cCccHHHHHHHHhccCcccCcCHHHHhc---------Chhhccc
Confidence            2357899999999999999999999999         9999744

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=100.00  E-value=9.2e-41  Score=349.65  Aligned_cols=247  Identities=18%  Similarity=0.272  Sum_probs=194.5

Q ss_pred             eeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEEee
Q psy4039         202 KFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHF  279 (588)
Q Consensus       202 ~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l~~  279 (588)
                      +.||+|+||.||+|.+.  ++.||||+++.......              .....+.+|+.++..+   .+||||+++++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~~--------------~~~~~~~~e~~il~~~---~~hp~Iv~~~~   63 (329)
T cd05588           1 RVIGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDD--------------EDIDWVQTEKHVFETA---SNHPFLVGLHS   63 (329)
T ss_pred             CeEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhh--------------hHHHHHHHHHHHHHhc---cCCCCCCceEE
Confidence            46999999999999986  78999999953211100              0122345688888776   57999999999


Q ss_pred             eeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh
Q psy4039         280 AFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNM  358 (588)
Q Consensus       280 ~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yLH~  358 (588)
                      +|.+..                            .+|+||||+ +|+|.+++...+ .+++..+..++.|++.||.|||+
T Consensus        64 ~~~~~~----------------------------~~~lv~e~~~~g~L~~~~~~~~-~l~~~~~~~~~~qi~~~l~~lH~  114 (329)
T cd05588          64 CFQTES----------------------------RLFFVIEFVSGGDLMFHMQRQR-KLPEEHARFYSAEISLALNFLHE  114 (329)
T ss_pred             EEEcCC----------------------------EEEEEEeCCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence            987632                            489999999 579999887654 89999999999999999999999


Q ss_pred             CCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCCcCc
Q psy4039         359 HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSD  438 (588)
Q Consensus       359 ~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksD  438 (588)
                      +||+||||||+|||++.+     +.+||+|||+++......     ......+||+.|+|||++.+..      ++.++|
T Consensus       115 ~~ivH~dlkp~Nili~~~-----~~~kL~Dfg~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~------~~~~~D  178 (329)
T cd05588         115 RGIIYRDLKLDNVLLDAE-----GHIKLTDYGMCKEGIRPG-----DTTSTFCGTPNYIAPEILRGED------YGFSVD  178 (329)
T ss_pred             CCeEecCCCHHHeEECCC-----CCEEECcCccccccccCC-----CccccccCCccccCHHHHcCCC------CCCccc
Confidence            999999999999999987     789999999987532211     1112467999999999997654      457899


Q ss_pred             hhhHHHHHHHHhcCCCCCccccccc-----------cccccccCCCCCCccHHHHHHHHHhhhhCCCCCCC------HHH
Q psy4039         439 AWTAGTVAYEIFGHDNPFYQSARNT-----------DYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS------AEL  501 (588)
Q Consensus       439 VwS~Gvil~ElltG~~Pf~~~~~~~-----------~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps------~~e  501 (588)
                      ||||||++|||++|+.||.......           .........++..++.++.+++.+||+.||.+||+      +++
T Consensus       179 iwslG~~l~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~  258 (329)
T cd05588         179 WWALGVLMFEMMAGRSPFDIVGMSDNPDQNTEDYLFQVILEKQIRIPRSLSVKASSVLKGFLNKDPKERLGCHPQTGFRD  258 (329)
T ss_pred             eechHHHHHHHHHCCCCcccccccccccccchHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhccCHHHcCCCCCCCCHHH
Confidence            9999999999999999996311000           00112233466788999999999999999999997      678


Q ss_pred             HHHHHhhhhhcCCccccC
Q psy4039         502 AATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       502 ~l~~L~~~~~~~h~w~~~  519 (588)
                      +++         |||+..
T Consensus       259 i~~---------hp~~~~  267 (329)
T cd05588         259 IKS---------HPFFRN  267 (329)
T ss_pred             Hhc---------CCCCCC
Confidence            888         999963

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=100.00  E-value=4.3e-41  Score=358.35  Aligned_cols=256  Identities=20%  Similarity=0.234  Sum_probs=198.9

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||.||+|.+.  ++.||||++......           .   ......+.+|+.+++.+    +|||
T Consensus         1 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~-----------~---~~~~~~~~~E~~il~~l----~h~~   62 (376)
T cd05598           1 SMFVKIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVL-----------M---RNQAAHVKAERDILAEA----DNEW   62 (376)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHH-----------h---hhhHHHHHHHHHHHHhC----CCCC
Confidence            47999999999999999999987  789999998431100           0   01223456799999987    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++.|.+..                            .+|+||||+ +|+|.+++...+ .+++..+..++.||+.|
T Consensus        63 iv~~~~~~~~~~----------------------------~~~lv~E~~~~g~L~~~i~~~~-~~~~~~~~~~~~qi~~a  113 (376)
T cd05598          63 VVKLYYSFQDKD----------------------------NLYFVMDYIPGGDMMSLLIRLG-IFEEDLARFYIAELTCA  113 (376)
T ss_pred             cceEEEEEEcCC----------------------------EEEEEEeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHH
Confidence            999999987632                            499999999 689999998764 78999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCcc-------------------------------
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSM-------------------------------  401 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~-------------------------------  401 (588)
                      |+|||++||+||||||+|||++.+     +.+||+|||+|..+......                               
T Consensus       114 l~~lH~~~ivHrDlkp~Nill~~~-----~~ikL~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (376)
T cd05598         114 IESVHKMGFIHRDIKPDNILIDRD-----GHIKLTDFGLCTGFRWTHDSKYYQKGDHHRQDSMEPSEEWSEIDRCRLKPL  188 (376)
T ss_pred             HHHHHHCCeEeCCCCHHHEEECCC-----CCEEEEeCCCCccccccccccccccccccccccccccccccccccccccch
Confidence            999999999999999999999987     79999999998543210000                               


Q ss_pred             -------ccccccccccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccc------ccc
Q psy4039         402 -------QYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY------EVN  468 (588)
Q Consensus       402 -------~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~------~~~  468 (588)
                             .........+||+.|||||++.+..      ++.++|||||||++|||++|+.||.+.......      ...
T Consensus       189 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~------~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~  262 (376)
T cd05598         189 ERRRKRQHQRCLAHSLVGTPNYIAPEVLLRTG------YTQLCDWWSVGVILYEMLVGQPPFLADTPAETQLKVINWETT  262 (376)
T ss_pred             hhhhhhhcccccccccCCCccccCHHHHcCCC------CCcceeeeeccceeeehhhCCCCCCCCCHHHHHHHHhccCcc
Confidence                   0000012357999999999997665      457899999999999999999999764322111      111


Q ss_pred             ccCCCCCCccHHHHHHHHHhhhhCCCCCC---CHHHHHHHHhhhhhcCCccccC
Q psy4039         469 ALPQLNTNVPEVMRRLVAKLLENDPSDRP---SAELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       469 ~~~~~~~~~~~~l~~Li~~~L~~dP~~Rp---s~~e~l~~L~~~~~~~h~w~~~  519 (588)
                      ...+....+++++.++|.+|+ .+|.+|+   +++++++         |||++.
T Consensus       263 ~~~~~~~~~s~~~~~li~~l~-~~p~~R~~~~t~~ell~---------h~~~~~  306 (376)
T cd05598         263 LHIPSQAKLSREASDLILRLC-CGAEDRLGKNGADEIKA---------HPFFKG  306 (376)
T ss_pred             ccCCCCCCCCHHHHHHHHHHh-cCHhhcCCCCCHHHHhC---------CCCcCC
Confidence            111223467899999999977 5999999   8999998         999974

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=100.00  E-value=1.4e-40  Score=349.04  Aligned_cols=265  Identities=20%  Similarity=0.265  Sum_probs=208.7

Q ss_pred             cccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCC
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPP  270 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~  270 (588)
                      +..++|++.+.||+|+||.||+|.+.  +..+|+|++....   ..             .....+.+|+.+++.+    +
T Consensus         2 l~~~~y~~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~---~~-------------~~~~~~~~E~~~l~~l----~   61 (333)
T cd06650           2 LKDDDFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEI---KP-------------AIRNQIIRELQVLHEC----N   61 (333)
T ss_pred             cchhhhheeccccCCCCEEEEEEEECCCCcEEEEEEeeccc---CH-------------HHHHHHHHHHHHHHHC----C
Confidence            44588999999999999999999997  7789999985311   00             0123456799999987    8


Q ss_pred             CCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4039         271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQL  349 (588)
Q Consensus       271 HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql  349 (588)
                      ||||++++++|.+..                            .+++||||+ +|+|.+++.... .+++..+..++.|+
T Consensus        62 h~~iv~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~l  112 (333)
T cd06650          62 SPYIVGFYGAFYSDG----------------------------EISICMEHMDGGSLDQVLKKAG-RIPEQILGKVSIAV  112 (333)
T ss_pred             CCcccceeEEEEECC----------------------------EEEEEEecCCCCcHHHHHHHcC-CCCHHHHHHHHHHH
Confidence            999999999998732                            499999999 679999998754 78999999999999


Q ss_pred             HHHHHHHHhC-CceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCC
Q psy4039         350 LEGVTHLNMH-RTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGL  428 (588)
Q Consensus       350 ~~gL~yLH~~-~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~  428 (588)
                      +.||.|||+. +|+||||||+|||++.+     +.+||+|||++........       ....||+.|+|||++.+..  
T Consensus       113 ~~~l~~lH~~~~ivH~dlkp~Nili~~~-----~~~kL~Dfg~~~~~~~~~~-------~~~~~~~~y~aPE~~~~~~--  178 (333)
T cd06650         113 IKGLTYLREKHKIMHRDVKPSNILVNSR-----GEIKLCDFGVSGQLIDSMA-------NSFVGTRSYMSPERLQGTH--  178 (333)
T ss_pred             HHHHHHHHhcCCEEecCCChhhEEEcCC-----CCEEEeeCCcchhhhhhcc-------ccCCCCccccCHHHhcCCC--
Confidence            9999999975 79999999999999887     7899999999876533211       1356899999999997654  


Q ss_pred             ccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccc-------------------------------------------
Q psy4039         429 FSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY-------------------------------------------  465 (588)
Q Consensus       429 ~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~-------------------------------------------  465 (588)
                          ++.++|||||||++|||++|+.||.........                                           
T Consensus       179 ----~~~~~DvwslG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (333)
T cd06650         179 ----YSVQSDIWSMGLSLVEMAIGRYPIPPPDAKELELMFGCPVEGDPAESETSPRPRPPGRPLSSYGPDSRPPMAIFEL  254 (333)
T ss_pred             ----CCcHHHHHHHHHHHHHHHHCCCCCCCcchhHHHHHhcCcccCCccccccCcccCCccchhhhhcccccccccHHHH
Confidence                457899999999999999999998642110000                                           


Q ss_pred             ----cccccCCCC-CCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccCCCCChhHHHHHHHh
Q psy4039         466 ----EVNALPQLN-TNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGATPSHNEIMQWLLT  533 (588)
Q Consensus       466 ----~~~~~~~~~-~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~~~~~~~~~~~l~~  533 (588)
                          .....+..+ ..++.++++||.+||+.||++|||+++++.         |+|++.......+...|+.+
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~P~~Rpt~~ell~---------h~~~~~~~~~~~~~~~~~~~  318 (333)
T cd06650         255 LDYIVNEPPPKLPSGVFGAEFQDFVNKCLIKNPAERADLKQLMV---------HAFIKRSEAEEVDFAGWLCS  318 (333)
T ss_pred             HHHHhcCCCccCCCCCcCHHHHHHHHHhccCCcccCcCHHHHhh---------CHHHhcCccccccHHHHHHH
Confidence                000001111 135788999999999999999999999998         99999766556667788744

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=100.00  E-value=1.1e-40  Score=353.70  Aligned_cols=254  Identities=23%  Similarity=0.264  Sum_probs=197.0

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      .++|.+.+.||+|+||.||+|.+.  ++.||||++.......               .....+.+|+.+++.+    +||
T Consensus        23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~---------------~~~~~~~~E~~~l~~l----~h~   83 (364)
T cd07875          23 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQ---------------THAKRAYRELVLMKCV----NHK   83 (364)
T ss_pred             hcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCccccCc---------------hhHHHHHHHHHHHHhc----CCC
Confidence            488999999999999999999986  7899999985321110               0123345688888887    999


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      ||+++++++....                      .......+|+||||++++|.+++..   .+++..+..++.|++.|
T Consensus        84 ~ii~~~~~~~~~~----------------------~~~~~~~~~lv~e~~~~~l~~~~~~---~~~~~~~~~~~~qi~~a  138 (364)
T cd07875          84 NIIGLLNVFTPQK----------------------SLEEFQDVYIVMELMDANLCQVIQM---ELDHERMSYLLYQMLCG  138 (364)
T ss_pred             Cccccceeecccc----------------------cccccCeEEEEEeCCCCCHHHHHHh---cCCHHHHHHHHHHHHHH
Confidence            9999999886532                      1112235899999999899888853   68899999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||++||+||||||+|||++.+     +.+||+|||+++.......      .....||+.|+|||++.+..      
T Consensus       139 L~~LH~~~ivH~Dlkp~NIll~~~-----~~~kL~DfG~a~~~~~~~~------~~~~~~t~~y~aPE~~~~~~------  201 (364)
T cd07875         139 IKHLHSAGIIHRDLKPSNIVVKSD-----CTLKILDFGLARTAGTSFM------MTPYVVTRYYRAPEVILGMG------  201 (364)
T ss_pred             HHHHhhCCeecCCCCHHHEEECCC-----CcEEEEeCCCccccCCCCc------ccCCcccCCcCCHHHHhCCC------
Confidence            999999999999999999999987     7999999999976543211      12356899999999997654      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCccccccccccc------------------------ccc------------------
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV------------------------NAL------------------  470 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~------------------------~~~------------------  470 (588)
                      ++.++|||||||++|||++|+.||.+......+..                        ...                  
T Consensus       202 ~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (364)
T cd07875         202 YKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFP  281 (364)
T ss_pred             CCchhhHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHhhhHHHHHHHhhCCCcCCCChHhhCcccccc
Confidence            45789999999999999999999965311000000                        000                  


Q ss_pred             --CCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCcccc
Q psy4039         471 --PQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLY  518 (588)
Q Consensus       471 --~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~  518 (588)
                        .......+.++++||.+||+.||.+|||++++++         |||+.
T Consensus       282 ~~~~~~~~~~~~~~dll~~mL~~dP~~R~t~~e~L~---------hp~~~  322 (364)
T cd07875         282 ADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQ---------HPYIN  322 (364)
T ss_pred             ccccccccccHHHHHHHHHhcCcCcccCCCHHHHhc---------Ccccc
Confidence              0011123567899999999999999999999999         99996

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=8.2e-41  Score=356.45  Aligned_cols=256  Identities=21%  Similarity=0.287  Sum_probs=196.6

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|.+.+.||+|+||.||+|.+.  ++.||||++.+....          ..    .....+.+|+.+++.+    +|||
T Consensus         1 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~----------~~----~~~~~~~~E~~il~~l----~hp~   62 (377)
T cd05629           1 EDFHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMF----------KK----DQLAHVKAERDVLAES----DSPW   62 (377)
T ss_pred             CCceEeEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHH----------Hh----HHHHHHHHHHHHHHhC----CCCC
Confidence            47899999999999999999886  789999998531100          00    0123456788999887    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      ||+++++|.+..                            .+|+||||+ +|+|.+++.... .+++..+..++.|++.|
T Consensus        63 iv~~~~~~~~~~----------------------------~~~lv~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~ql~~a  113 (377)
T cd05629          63 VVSLYYSFQDAQ----------------------------YLYLIMEFLPGGDLMTMLIKYD-TFSEDVTRFYMAECVLA  113 (377)
T ss_pred             cceEEEEEEcCC----------------------------eeEEEEeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHH
Confidence            999999988632                            499999999 689999997654 78999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCcc-----------ccc-----------------
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSM-----------QYS-----------------  404 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~-----------~~~-----------------  404 (588)
                      |.|||++||+||||||+|||++.+     +.+||+|||+++........           ...                 
T Consensus       114 L~~LH~~givHrDlkp~NIll~~~-----~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (377)
T cd05629         114 IEAVHKLGFIHRDIKPDNILIDRG-----GHIKLSDFGLSTGFHKQHDSAYYQKLLQGKSNKNRIDNRNSVAVDSINLTM  188 (377)
T ss_pred             HHHHHhCCeeccCCCHHHEEECCC-----CCEEEeecccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999999999977     79999999999643210000           000                 


Q ss_pred             --------------cccccccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccccc---
Q psy4039         405 --------------SADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV---  467 (588)
Q Consensus       405 --------------~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~---  467 (588)
                                    ......+||+.|+|||++.+..      ++.++|||||||++|||++|..||........+..   
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~------~~~~~DiwSlGvil~elltG~~Pf~~~~~~~~~~~i~~  262 (377)
T cd05629         189 SSKDQIATWKKNRRLMAYSTVGTPDYIAPEIFLQQG------YGQECDWWSLGAIMFECLIGWPPFCSENSHETYRKIIN  262 (377)
T ss_pred             cchhhhhhhhhcccccccccCCCccccCHHHHccCC------CCCceeeEecchhhhhhhcCCCCCCCCCHHHHHHHHHc
Confidence                          0001246999999999997654      45789999999999999999999976432211111   


Q ss_pred             -cccCCCC--CCccHHHHHHHHHhhhhCCCCC---CCHHHHHHHHhhhhhcCCccccC
Q psy4039         468 -NALPQLN--TNVPEVMRRLVAKLLENDPSDR---PSAELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       468 -~~~~~~~--~~~~~~l~~Li~~~L~~dP~~R---ps~~e~l~~L~~~~~~~h~w~~~  519 (588)
                       .....++  ..++.++++||.+||. +|.+|   +++.++++         |||+..
T Consensus       263 ~~~~~~~p~~~~~s~~~~dli~~lL~-~~~~r~~r~~~~~~l~---------hp~~~~  310 (377)
T cd05629         263 WRETLYFPDDIHLSVEAEDLIRRLIT-NAENRLGRGGAHEIKS---------HPFFRG  310 (377)
T ss_pred             cCCccCCCCCCCCCHHHHHHHHHHhc-CHhhcCCCCCHHHHhc---------CCCcCC
Confidence             1111222  2578999999999997 77765   59999988         999974

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=100.00  E-value=9.1e-41  Score=356.75  Aligned_cols=255  Identities=21%  Similarity=0.227  Sum_probs=197.1

Q ss_pred             CeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCce
Q psy4039         197 DIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNV  274 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNI  274 (588)
                      .|++.+.||+|+||.||+|.+.  ++.||||++......           .   ......+.+|+.+++.+    +||||
T Consensus         2 ~f~~~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~-----------~---~~~~~~~~~E~~il~~~----~h~~i   63 (382)
T cd05625           2 MFVKIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVL-----------L---RNQVAHVKAERDILAEA----DNEWV   63 (382)
T ss_pred             CcEEEEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhh-----------h---HHHHHHHHHHHHHHHhC----CCCcC
Confidence            5889999999999999999986  789999998531100           0   00223466799999887    99999


Q ss_pred             EEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         275 VVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       275 V~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      |+++++|.+..                            .+|+||||+ +|+|.+++...+ .+++..+..++.||+.||
T Consensus        64 v~~~~~~~~~~----------------------------~~~lv~E~~~gg~L~~~l~~~~-~~~e~~~~~~~~qi~~al  114 (382)
T cd05625          64 VRLYYSFQDKD----------------------------NLYFVMDYIPGGDMMSLLIRMG-IFPEDLARFYIAELTCAV  114 (382)
T ss_pred             CeEEEEEEeCC----------------------------EEEEEEeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHH
Confidence            99999988632                            499999999 679999997654 789999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCcc--------------------------------
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSM--------------------------------  401 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~--------------------------------  401 (588)
                      .|||++||+||||||+|||++.+     +.+||+|||+|+........                                
T Consensus       115 ~~lH~~~ivHrDlKp~NILl~~~-----g~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (382)
T cd05625         115 ESVHKMGFIHRDIKPDNILIDRD-----GHIKLTDFGLCTGFRWTHDSKYYQSGDHVRQDSMDFSNEWGDPANCRCGDRL  189 (382)
T ss_pred             HHHHhCCeecCCCCHHHEEECCC-----CCEEEeECCCCccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999987     89999999998643210000                                


Q ss_pred             ----------ccccccccccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccc----c-
Q psy4039         402 ----------QYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY----E-  466 (588)
Q Consensus       402 ----------~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~----~-  466 (588)
                                .........+||+.|+|||++.+..      ++.++||||+||++|||++|++||.........    . 
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~------~~~~~DiwSlGvil~elltG~~Pf~~~~~~~~~~~i~~~  263 (382)
T cd05625         190 KPLERRAARQHQRCLAHSLVGTPNYIAPEVLLRTG------YTQLCDWWSVGVILYEMLVGQPPFLAQTPLETQMKVINW  263 (382)
T ss_pred             cchhhhhccccccccccccccCcccCCHHHhcCCC------CCCeeeEEechHHHHHHHhCCCCCCCCCHHHHHHHHHcc
Confidence                      0000012357999999999997654      457899999999999999999999764321111    1 


Q ss_pred             -ccccCCCCCCccHHHHHHHHHhhhhCCCCCCC---HHHHHHHHhhhhhcCCccccC
Q psy4039         467 -VNALPQLNTNVPEVMRRLVAKLLENDPSDRPS---AELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       467 -~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps---~~e~l~~L~~~~~~~h~w~~~  519 (588)
                       .....+....+++++.++|.+|+ .||.+|++   ++++++         |||++.
T Consensus       264 ~~~~~~p~~~~~s~~~~~li~~l~-~~p~~R~~~~~~~ei~~---------hp~f~~  310 (382)
T cd05625         264 QTSLHIPPQAKLSPEASDLIIKLC-RGPEDRLGKNGADEIKA---------HPFFKT  310 (382)
T ss_pred             CCCcCCCCcccCCHHHHHHHHHHc-cCHhHcCCCCCHHHHhc---------CCCcCC
Confidence             11111123467899999999987 59999997   888888         999974

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=100.00  E-value=1.5e-40  Score=366.46  Aligned_cols=265  Identities=23%  Similarity=0.290  Sum_probs=207.0

Q ss_pred             ccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCC
Q psy4039         194 KVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPH  271 (588)
Q Consensus       194 ~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~H  271 (588)
                      ..++|.+.+.||+|+||+||+|.+.  ++.||||++........               ....+.+|+.++..+    +|
T Consensus        30 ~~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~---------------~~~~~~~Ei~~l~~~----~h   90 (496)
T PTZ00283         30 QAKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEA---------------DKNRAQAEVCCLLNC----DF   90 (496)
T ss_pred             cCCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCHH---------------HHHHHHHHHHHHhcC----CC
Confidence            3479999999999999999999885  88999999854322110               122345688888776    99


Q ss_pred             CceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh---cCCCCHHHHHHHHH
Q psy4039         272 PNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER---CAQLSMHERVLLFT  347 (588)
Q Consensus       272 pNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~---~~~l~~~~~~~i~~  347 (588)
                      +||+++++.+....+.                    .......+++||||+ +|+|.+++..+   ...+++..+..++.
T Consensus        91 ~~iv~~~~~~~~~~~~--------------------~~~~~~~i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~  150 (496)
T PTZ00283         91 FSIVKCHEDFAKKDPR--------------------NPENVLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFI  150 (496)
T ss_pred             CcEEEeecceeccccc--------------------CcccceEEEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHH
Confidence            9999998877643210                    001112478999999 68999999764   24689999999999


Q ss_pred             HHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCC
Q psy4039         348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG  427 (588)
Q Consensus       348 ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~  427 (588)
                      |++.||.|||+++|+||||||+|||++.+     +.+||+|||+++.........   .....+||+.|+|||++.+.. 
T Consensus       151 qll~aL~~lH~~~IiHrDLKP~NILl~~~-----~~vkL~DFGls~~~~~~~~~~---~~~~~~Gt~~Y~aPE~~~~~~-  221 (496)
T PTZ00283        151 QVLLAVHHVHSKHMIHRDIKSANILLCSN-----GLVKLGDFGFSKMYAATVSDD---VGRTFCGTPYYVAPEIWRRKP-  221 (496)
T ss_pred             HHHHHHHHHHhCCEecCCCCHHHEEEeCC-----CCEEEEecccCeecccccccc---ccccccCCcceeCHHHhCCCC-
Confidence            99999999999999999999999999987     799999999998754422111   112467999999999997654 


Q ss_pred             CccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccc---cccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHH
Q psy4039         428 LFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY---EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAAT  504 (588)
Q Consensus       428 ~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~---~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~  504 (588)
                           ++.++|||||||++|||++|+.||.+......+   ......+++..+++++.+++.+||+.||.+||++.++++
T Consensus       222 -----~s~k~DVwSlGvilyeLltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~RPs~~ell~  296 (496)
T PTZ00283        222 -----YSKKADMFSLGVLLYELLTLKRPFDGENMEEVMHKTLAGRYDPLPPSISPEMQEIVTALLSSDPKRRPSSSKLLN  296 (496)
T ss_pred             -----CCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcccChhhCcCHHHHHh
Confidence                 457899999999999999999999764322111   122334567789999999999999999999999999998


Q ss_pred             HHhhhhhcCCccccCC
Q psy4039         505 VCQLYLWAPKHWLYGA  520 (588)
Q Consensus       505 ~L~~~~~~~h~w~~~~  520 (588)
                               |||++..
T Consensus       297 ---------~p~~~~~  303 (496)
T PTZ00283        297 ---------MPICKLF  303 (496)
T ss_pred             ---------CHHHHHh
Confidence                     9987643

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=100.00  E-value=4.8e-41  Score=350.98  Aligned_cols=246  Identities=22%  Similarity=0.324  Sum_probs=195.0

Q ss_pred             eeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEEee
Q psy4039         202 KFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHF  279 (588)
Q Consensus       202 ~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l~~  279 (588)
                      +.||+|+||.||++.+.  +..||||++.+......              .....+.+|+.++..+    +||||+++++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~~--------------~~~~~~~~e~~~l~~~----~hp~i~~~~~   62 (325)
T cd05594           1 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAK--------------DEVAHTLTENRVLQNS----RHPFLTALKY   62 (325)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhh--------------hHHHHHHHHHHHHHhC----CCCCCCceEE
Confidence            46999999999999986  78999999953211100              0112345678888876    8999999999


Q ss_pred             eeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh
Q psy4039         280 AFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNM  358 (588)
Q Consensus       280 ~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yLH~  358 (588)
                      ++.+..                            .+++||||+ +|+|..++.... .+++..+..++.||+.||.|||+
T Consensus        63 ~~~~~~----------------------------~~~lv~E~~~~~~L~~~l~~~~-~l~~~~~~~~~~qi~~aL~~lH~  113 (325)
T cd05594          63 SFQTHD----------------------------RLCFVMEYANGGELFFHLSRER-VFSEDRARFYGAEIVSALDYLHS  113 (325)
T ss_pred             EEEcCC----------------------------EEEEEEeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHh
Confidence            887632                            499999999 689998887654 79999999999999999999997


Q ss_pred             -CCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCCcC
Q psy4039         359 -HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS  437 (588)
Q Consensus       359 -~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ks  437 (588)
                       +||+||||||+|||++.+     +.+||+|||+++.......     ......||+.|+|||++.+..      ++.++
T Consensus       114 ~~~ivHrDikp~NIll~~~-----~~~kL~Dfg~~~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~------~~~~~  177 (325)
T cd05594         114 EKNVVYRDLKLENLMLDKD-----GHIKITDFGLCKEGIKDGA-----TMKTFCGTPEYLAPEVLEDND------YGRAV  177 (325)
T ss_pred             cCCEEecCCCCCeEEECCC-----CCEEEecCCCCeecCCCCc-----ccccccCCcccCCHHHHccCC------CCCcc
Confidence             799999999999999987     7999999999875322111     112456999999999997654      45789


Q ss_pred             chhhHHHHHHHHhcCCCCCcccccccccc--ccccCCCCCCccHHHHHHHHHhhhhCCCCCC-----CHHHHHHHHhhhh
Q psy4039         438 DAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVAKLLENDPSDRP-----SAELAATVCQLYL  510 (588)
Q Consensus       438 DVwS~Gvil~ElltG~~Pf~~~~~~~~~~--~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rp-----s~~e~l~~L~~~~  510 (588)
                      |||||||++|||++|..||.+........  ......++..+++++.+++.+||+.||++|+     ++.++++      
T Consensus       178 DiwslG~il~el~tG~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~il~------  251 (325)
T cd05594         178 DWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRFPRTLSPEAKSLLSGLLKKDPKQRLGGGPDDAKEIMQ------  251 (325)
T ss_pred             ccccccceeeeeccCCCCCCCCCHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhcCHHHhCCCCCCCHHHHhc------
Confidence            99999999999999999997643222111  1222345677899999999999999999997     8999988      


Q ss_pred             hcCCccccC
Q psy4039         511 WAPKHWLYG  519 (588)
Q Consensus       511 ~~~h~w~~~  519 (588)
                         |||+..
T Consensus       252 ---h~~~~~  257 (325)
T cd05594         252 ---HKFFAG  257 (325)
T ss_pred             ---CCCcCC
Confidence               999974

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=100.00  E-value=1.1e-40  Score=349.10  Aligned_cols=247  Identities=18%  Similarity=0.267  Sum_probs=193.6

Q ss_pred             eeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEEee
Q psy4039         202 KFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHF  279 (588)
Q Consensus       202 ~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l~~  279 (588)
                      +.||+|+||.||+|.+.  ++.||+|++........              .....+.+|+.++..+   .+||||+++++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~--------------~~~~~~~~E~~~l~~~---~~hp~iv~~~~   63 (329)
T cd05618           1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDD--------------EDIDWVQTEKHVFEQA---SNHPFLVGLHS   63 (329)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEhhHhcch--------------hHHHHHHHHHHHHHhc---CCCCcCCceee
Confidence            46999999999999987  68999999964211110              0112345677777665   58999999999


Q ss_pred             eeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh
Q psy4039         280 AFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNM  358 (588)
Q Consensus       280 ~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yLH~  358 (588)
                      ++.+..                            ..++||||+ +|+|..++.... .+++..+..++.|++.||.|||+
T Consensus        64 ~~~~~~----------------------------~~~lv~E~~~~~~L~~~~~~~~-~l~~~~~~~i~~qi~~~l~~lH~  114 (329)
T cd05618          64 CFQTES----------------------------RLFFVIEYVNGGDLMFHMQRQR-KLPEEHARFYSAEISLALNYLHE  114 (329)
T ss_pred             EEEeCC----------------------------EEEEEEeCCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence            987632                            489999999 589998887654 79999999999999999999999


Q ss_pred             CCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCCcCc
Q psy4039         359 HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSD  438 (588)
Q Consensus       359 ~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksD  438 (588)
                      +||+||||||+|||++.+     +.+||+|||+++.......     ......||+.|+|||++.+..      ++.++|
T Consensus       115 ~~ivH~Dikp~Nili~~~-----~~~kL~DfG~~~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~------~~~~~D  178 (329)
T cd05618         115 RGIIYRDLKLDNVLLDSE-----GHIKLTDYGMCKEGLRPGD-----TTSTFCGTPNYIAPEILRGED------YGFSVD  178 (329)
T ss_pred             CCeeeCCCCHHHEEECCC-----CCEEEeeCCccccccCCCC-----ccccccCCccccCHHHHcCCC------CCCccc
Confidence            999999999999999988     7999999999875322111     112467999999999997664      457899


Q ss_pred             hhhHHHHHHHHhcCCCCCcccccc----c-------cccccccCCCCCCccHHHHHHHHHhhhhCCCCCCC------HHH
Q psy4039         439 AWTAGTVAYEIFGHDNPFYQSARN----T-------DYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS------AEL  501 (588)
Q Consensus       439 VwS~Gvil~ElltG~~Pf~~~~~~----~-------~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps------~~e  501 (588)
                      ||||||++|||++|+.||......    .       .........++..++.++.+++.+||+.||.+||+      +++
T Consensus       179 iwslG~il~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~ll~~~L~~dP~~R~~~~~~~~~~~  258 (329)
T cd05618         179 WWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIPRSLSVKAASVLKSFLNKDPKERLGCHPQTGFAD  258 (329)
T ss_pred             eecccHHHHHHhhCCCCCccCCCcCCcccccHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhcCCHHHcCCCCCCCCHHH
Confidence            999999999999999999531000    0       00112233567788999999999999999999998      578


Q ss_pred             HHHHHhhhhhcCCccccC
Q psy4039         502 AATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       502 ~l~~L~~~~~~~h~w~~~  519 (588)
                      +++         |||++.
T Consensus       259 i~~---------hp~f~~  267 (329)
T cd05618         259 IQG---------HPFFRN  267 (329)
T ss_pred             Hhc---------CCCCCC
Confidence            777         999964

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=100.00  E-value=7.2e-41  Score=356.25  Aligned_cols=258  Identities=22%  Similarity=0.250  Sum_probs=199.7

Q ss_pred             CeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCce
Q psy4039         197 DIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNV  274 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNI  274 (588)
                      +|++.+.||+|+||.||+|.+.  ++.||||.+....  .+.             ...+.+.+|+.+++.+    +||||
T Consensus         1 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~--~~~-------------~~~~~~~~E~~~l~~l----~h~ni   61 (372)
T cd07853           1 DVEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVF--QNL-------------VSCKRVFRELKMLCFF----KHDNV   61 (372)
T ss_pred             CCcccceeeeCCCEEEEEEEECCCCCEEEEEeccccc--cch-------------HHHHHHHHHHHHHHhC----CCCCc
Confidence            4788999999999999999975  8899999984311  000             0123456789999887    89999


Q ss_pred             EEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy4039         275 VVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVT  354 (588)
Q Consensus       275 V~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~  354 (588)
                      +++++++.+..                       ......+|+||||+.++|.+++.... .+++..+..++.||+.||.
T Consensus        62 v~~~~~~~~~~-----------------------~~~~~~~~lv~e~~~~~l~~~~~~~~-~l~~~~~~~~~~qi~~aL~  117 (372)
T cd07853          62 LSALDILQPPH-----------------------IDPFEEIYVVTELMQSDLHKIIVSPQ-PLSSDHVKVFLYQILRGLK  117 (372)
T ss_pred             CCHhheecCCC-----------------------ccccceEEEEeeccccCHHHHHhcCC-CCCHHHHHHHHHHHHHHHH
Confidence            99999987632                       01122489999999989998886653 7999999999999999999


Q ss_pred             HHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCC
Q psy4039         355 HLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY  434 (588)
Q Consensus       355 yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~  434 (588)
                      |||++||+||||||+|||++.+     +.+||+|||+++........    ......||+.|+|||++.+...     ++
T Consensus       118 ~LH~~~ivH~dlkp~Nili~~~-----~~~kL~Dfg~a~~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~-----~~  183 (372)
T cd07853         118 YLHSAGILHRDIKPGNLLVNSN-----CVLKICDFGLARVEEPDESK----HMTQEVVTQYYRAPEILMGSRH-----YT  183 (372)
T ss_pred             HHHhCCeeCCCCChHHEEECCC-----CCEEeccccceeecccCccc----cCCCCCcCCCcCCHHHHcCCCC-----CC
Confidence            9999999999999999999987     89999999999865432111    1123468999999999876432     35


Q ss_pred             CcCchhhHHHHHHHHhcCCCCCccccccccc---------------------------cccc-------cCCCCCCccHH
Q psy4039         435 SKSDAWTAGTVAYEIFGHDNPFYQSARNTDY---------------------------EVNA-------LPQLNTNVPEV  480 (588)
Q Consensus       435 ~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~---------------------------~~~~-------~~~~~~~~~~~  480 (588)
                      .++||||+||++|||++|+.||.+.......                           ....       ........+++
T Consensus       184 ~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (372)
T cd07853         184 SAVDIWSVGCIFAELLGRRILFQAQSPIQQLDLITDLLGTPSLEAMRSACEGARAHILRGPHKPPSLPVLYTLSSQATHE  263 (372)
T ss_pred             cHHHHHhHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHHhhHHHHHHHHhCCCCCCchHHhcccCCCCCHH
Confidence            6899999999999999999999653211000                           0000       00123456889


Q ss_pred             HHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccCC
Q psy4039         481 MRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGA  520 (588)
Q Consensus       481 l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~  520 (588)
                      +.+||.+||+.||.+|||++++++         |||+...
T Consensus       264 ~~~li~~mL~~dP~~R~t~~e~l~---------hp~~~~~  294 (372)
T cd07853         264 AVHLLCRMLVFDPDKRISAADALA---------HPYLDEG  294 (372)
T ss_pred             HHHHHHHhCCCChhhCcCHHHHhc---------CHhhCCC
Confidence            999999999999999999999999         9999854

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=100.00  E-value=1.7e-40  Score=353.99  Aligned_cols=261  Identities=21%  Similarity=0.276  Sum_probs=203.2

Q ss_pred             CCccccccCCeEEeeeecccCceeEEEEEEC-------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHH
Q psy4039         188 PDVDDVKVDDIQIGKFIAKGTNAVVYEATFR-------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDM  260 (588)
Q Consensus       188 ~~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~  260 (588)
                      ...|.+..++|++++.||+|+||.||+|++.       +..||||++......                .....+.+|+.
T Consensus        30 ~~~~~~~~~~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~----------------~~~~~~~~E~~   93 (374)
T cd05106          30 NEKWEFPRDNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHT----------------DEREALMSELK   93 (374)
T ss_pred             cccccccHHHceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCCH----------------HHHHHHHHHHH
Confidence            4567788899999999999999999999864       357999998532110                01234567888


Q ss_pred             HHhhhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc-----
Q psy4039         261 LMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC-----  334 (588)
Q Consensus       261 il~~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~-----  334 (588)
                      +++.+   .+|||||+++++|.+..                            .+++||||+ +|+|.+++..+.     
T Consensus        94 il~~l---~~h~nIv~~~~~~~~~~----------------------------~~~lv~ey~~~g~L~~~l~~~~~~~~~  142 (374)
T cd05106          94 ILSHL---GQHKNIVNLLGACTHGG----------------------------PVLVITEYCCYGDLLNFLRKKAETFLN  142 (374)
T ss_pred             HHHhh---ccCCceeeEeeEecCCC----------------------------CeEEeHhhccCCcHHHHHHhhhhhhcc
Confidence            88876   57999999999987632                            389999999 689999986431     


Q ss_pred             ----------------------------------------------------------------CCCCHHHHHHHHHHHH
Q psy4039         335 ----------------------------------------------------------------AQLSMHERVLLFTQLL  350 (588)
Q Consensus       335 ----------------------------------------------------------------~~l~~~~~~~i~~ql~  350 (588)
                                                                                      ..+++.+++.++.||+
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~  222 (374)
T cd05106         143 FVMALPEISETSSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRPVSSSSSQSSDSKDEEDTEDSWPLDLDDLLRFSSQVA  222 (374)
T ss_pred             ccccccccccccccccccchhcccccccccccccccccccccCCccccccccccccchhccCCCCCcCHHHHHHHHHHHH
Confidence                                                                            2478889999999999


Q ss_pred             HHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCcc
Q psy4039         351 EGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFS  430 (588)
Q Consensus       351 ~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~  430 (588)
                      +||.|||++||+||||||+|||++++     ..+||+|||+++..........   .....+++.|||||++.+..    
T Consensus       223 ~aL~yLH~~giiHrDLkp~Nil~~~~-----~~~kL~DfGla~~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~----  290 (374)
T cd05106         223 QGMDFLASKNCIHRDVAARNVLLTDG-----RVAKICDFGLARDIMNDSNYVV---KGNARLPVKWMAPESIFDCV----  290 (374)
T ss_pred             HHHHHHHHCCEEeccCchheEEEeCC-----CeEEEeeceeeeeccCCcceee---ccCCCCccceeCHHHhcCCC----
Confidence            99999999999999999999999977     7899999999986544221111   11234567899999986554    


Q ss_pred             CCCCCcCchhhHHHHHHHHhc-CCCCCccccccccc----cccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHH
Q psy4039         431 FVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTDY----EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATV  505 (588)
Q Consensus       431 ~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~~----~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~  505 (588)
                        ++.++|||||||++|||++ |+.||.........    .....+..+..+|+++++++.+||+.||.+|||++++++.
T Consensus       291 --~~~~~DvwSlGvil~ellt~G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPs~~~l~~~  368 (374)
T cd05106         291 --YTVQSDVWSYGILLWEIFSLGKSPYPGILVNSKFYKMVKRGYQMSRPDFAPPEIYSIMKMCWNLEPTERPTFSQISQL  368 (374)
T ss_pred             --CCccccHHHHHHHHHHHHhCCCCCCccccccHHHHHHHHcccCccCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence              5678999999999999997 99999764322111    1122333455678999999999999999999999999998


Q ss_pred             Hhhh
Q psy4039         506 CQLY  509 (588)
Q Consensus       506 L~~~  509 (588)
                      |+..
T Consensus       369 l~~~  372 (374)
T cd05106         369 IQRQ  372 (374)
T ss_pred             HHHH
Confidence            7643

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=100.00  E-value=7.8e-41  Score=353.48  Aligned_cols=258  Identities=22%  Similarity=0.311  Sum_probs=199.4

Q ss_pred             ccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCC
Q psy4039         192 DVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLP  269 (588)
Q Consensus       192 ~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~  269 (588)
                      ...+++|+..+.||+|+||.||+|++.  ++.||||++....   . ..            ....+.+|+.+++.+    
T Consensus        70 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~---~-~~------------~~~~~~~E~~~l~~l----  129 (353)
T PLN00034         70 AKSLSELERVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNH---E-DT------------VRRQICREIEILRDV----  129 (353)
T ss_pred             CCCHHHHhhhhhccCCCCeEEEEEEECCCCCEEEEEEEecCC---c-HH------------HHHHHHHHHHHHHhC----
Confidence            344578888999999999999999986  7899999985321   0 00            123456799999887    


Q ss_pred             CCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHH
Q psy4039         270 PHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQ  348 (588)
Q Consensus       270 ~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~q  348 (588)
                      +|+||+++++++.+.                            ..+++||||+ +|+|.+.     ...++..+..++.|
T Consensus       130 ~h~~iv~~~~~~~~~----------------------------~~~~lv~e~~~~~~L~~~-----~~~~~~~~~~i~~q  176 (353)
T PLN00034        130 NHPNVVKCHDMFDHN----------------------------GEIQVLLEFMDGGSLEGT-----HIADEQFLADVARQ  176 (353)
T ss_pred             CCCCcceeeeEeccC----------------------------CeEEEEEecCCCCccccc-----ccCCHHHHHHHHHH
Confidence            999999999988753                            2489999999 5677542     25678888999999


Q ss_pred             HHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCC
Q psy4039         349 LLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGL  428 (588)
Q Consensus       349 l~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~  428 (588)
                      |+.||.|||++||+||||||+|||++.+     +.+||+|||+++........     .....||+.|+|||++..... 
T Consensus       177 i~~aL~~LH~~~ivHrDlkp~NIll~~~-----~~~kL~DfG~~~~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~-  245 (353)
T PLN00034        177 ILSGIAYLHRRHIVHRDIKPSNLLINSA-----KNVKIADFGVSRILAQTMDP-----CNSSVGTIAYMSPERINTDLN-  245 (353)
T ss_pred             HHHHHHHHHHCCEeecCCCHHHEEEcCC-----CCEEEcccccceeccccccc-----ccccccCccccCccccccccc-
Confidence            9999999999999999999999999987     79999999999875432211     124579999999998854321 


Q ss_pred             ccCCCCCcCchhhHHHHHHHHhcCCCCCccccccc------cccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHH
Q psy4039         429 FSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNT------DYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA  502 (588)
Q Consensus       429 ~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~------~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~  502 (588)
                      .....+.++|||||||++|||++|+.||.......      .......+..+..++.++++||.+||+.||++|||++++
T Consensus       246 ~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rpt~~el  325 (353)
T PLN00034        246 HGAYDGYAGDIWSLGVSILEFYLGRFPFGVGRQGDWASLMCAICMSQPPEAPATASREFRHFISCCLQREPAKRWSAMQL  325 (353)
T ss_pred             cCcCCCcchhHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHhccCCCCCCCccCHHHHHHHHHHccCChhhCcCHHHH
Confidence            11113357999999999999999999997421111      011122334556789999999999999999999999999


Q ss_pred             HHHHhhhhhcCCccccCCCC
Q psy4039         503 ATVCQLYLWAPKHWLYGATP  522 (588)
Q Consensus       503 l~~L~~~~~~~h~w~~~~~~  522 (588)
                      ++         |||+....+
T Consensus       326 l~---------hp~~~~~~~  336 (353)
T PLN00034        326 LQ---------HPFILRAQP  336 (353)
T ss_pred             hc---------CcccccCCc
Confidence            99         999986543

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=100.00  E-value=1.7e-40  Score=345.82  Aligned_cols=247  Identities=21%  Similarity=0.312  Sum_probs=193.1

Q ss_pred             eeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEEee
Q psy4039         202 KFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHF  279 (588)
Q Consensus       202 ~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l~~  279 (588)
                      +.||+|+||+||+|.+.  ++.||||++........              ........|..++..+   .+||||+++++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~--------------~~~~~~~~e~~~l~~~---~~hp~iv~~~~   63 (316)
T cd05619           1 KMLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMD--------------DDVECTMVEKRVLSLA---WEHPFLTHLYC   63 (316)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhc--------------chHHHHHHHHHHHHhc---cCCCcCcceEE
Confidence            46999999999999987  67899999953211000              0112234466666554   58999999999


Q ss_pred             eeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh
Q psy4039         280 AFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNM  358 (588)
Q Consensus       280 ~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yLH~  358 (588)
                      ++.+..                            .+++||||+ +|+|.+++.... .+++.++..++.|++.||.|||+
T Consensus        64 ~~~~~~----------------------------~~~lv~ey~~~g~L~~~l~~~~-~~~~~~~~~~~~qi~~al~~LH~  114 (316)
T cd05619          64 TFQTKE----------------------------NLFFVMEYLNGGDLMFHIQSCH-KFDLPRATFYAAEIICGLQFLHS  114 (316)
T ss_pred             EEEeCC----------------------------EEEEEEeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHh
Confidence            987632                            499999999 689999998653 79999999999999999999999


Q ss_pred             CCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCCcCc
Q psy4039         359 HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSD  438 (588)
Q Consensus       359 ~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksD  438 (588)
                      +||+||||||+|||++.+     +.+||+|||+++.......     ......||+.|+|||++.+..      ++.++|
T Consensus       115 ~~ivHrdikp~Nil~~~~-----~~~kl~Dfg~~~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~------~~~~~D  178 (316)
T cd05619         115 KGIVYRDLKLDNILLDTD-----GHIKIADFGMCKENMLGDA-----KTCTFCGTPDYIAPEILLGQK------YNTSVD  178 (316)
T ss_pred             CCeEeCCCCHHHEEECCC-----CCEEEccCCcceECCCCCC-----ceeeecCCccccCHHHHcCCC------CCchhh
Confidence            999999999999999987     7899999999875322111     112457999999999997654      457899


Q ss_pred             hhhHHHHHHHHhcCCCCCcccccccccc--ccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHH-HHHHHHhhhhhcCCc
Q psy4039         439 AWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE-LAATVCQLYLWAPKH  515 (588)
Q Consensus       439 VwS~Gvil~ElltG~~Pf~~~~~~~~~~--~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~-e~l~~L~~~~~~~h~  515 (588)
                      ||||||++|||++|..||..........  ....+.++..++.++++++.+||+.||++||++. ++++         ||
T Consensus       179 vwslG~il~el~~G~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~l~~---------h~  249 (316)
T cd05619         179 WWSFGVLLYEMLIGQSPFHGHDEEELFQSIRMDNPCYPRWLTREAKDILVKLFVREPERRLGVKGDIRQ---------HP  249 (316)
T ss_pred             hhhHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCccCCHHHHHHHHHHhccCHhhcCCChHHHHc---------Cc
Confidence            9999999999999999997643221111  1122345566889999999999999999999996 7777         99


Q ss_pred             cccC
Q psy4039         516 WLYG  519 (588)
Q Consensus       516 w~~~  519 (588)
                      |++.
T Consensus       250 ~~~~  253 (316)
T cd05619         250 FFRE  253 (316)
T ss_pred             ccCC
Confidence            9874

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>PHA03207 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=3.2e-40  Score=354.00  Aligned_cols=250  Identities=21%  Similarity=0.318  Sum_probs=198.9

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC----CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR----GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPP  270 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~----g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~  270 (588)
                      ..+|.+.+.||+|+||.||+|...    +..||||.+..                      .....+|+.+++.+    +
T Consensus        91 ~~~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~----------------------~~~~~~E~~il~~l----~  144 (392)
T PHA03207         91 RMQYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTG----------------------GKTPGREIDILKTI----S  144 (392)
T ss_pred             cCceEEEEeecCCCCeEEEEEEEcCCccceeEEEEeccc----------------------cccHHHHHHHHHhc----C
Confidence            367999999999999999999865    57899998732                      12234699999987    9


Q ss_pred             CCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy4039         271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLL  350 (588)
Q Consensus       271 HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~  350 (588)
                      |||||++++++....                            .++++||++.++|.+++... ..+++.+++.++.||+
T Consensus       145 h~~iv~~~~~~~~~~----------------------------~~~lv~e~~~~~l~~~l~~~-~~l~~~~~~~i~~ql~  195 (392)
T PHA03207        145 HRAIINLIHAYRWKS----------------------------TVCMVMPKYKCDLFTYVDRS-GPLPLEQAITIQRRLL  195 (392)
T ss_pred             CCCccceeeeEeeCC----------------------------EEEEEehhcCCCHHHHHHhc-CCCCHHHHHHHHHHHH
Confidence            999999999887532                            48999999999999999544 4899999999999999


Q ss_pred             HHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCcc
Q psy4039         351 EGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFS  430 (588)
Q Consensus       351 ~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~  430 (588)
                      .||.|||++||+||||||+|||++.+     +.+||+|||+++........   .......||+.|+|||++.+..    
T Consensus       196 ~aL~~LH~~givHrDlkp~Nill~~~-----~~~~l~DfG~a~~~~~~~~~---~~~~~~~gt~~y~aPE~~~~~~----  263 (392)
T PHA03207        196 EALAYLHGRGIIHRDVKTENIFLDEP-----ENAVLGDFGAACKLDAHPDT---PQCYGWSGTLETNSPELLALDP----  263 (392)
T ss_pred             HHHHHHHHCCccccCCCHHHEEEcCC-----CCEEEccCccccccCccccc---ccccccccccCccCHhHhcCCC----
Confidence            99999999999999999999999987     78999999999765442211   1112467999999999997654    


Q ss_pred             CCCCCcCchhhHHHHHHHHhcCCCCCccccccc-----------------c---------------ccccccCCC-----
Q psy4039         431 FVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNT-----------------D---------------YEVNALPQL-----  473 (588)
Q Consensus       431 ~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~-----------------~---------------~~~~~~~~~-----  473 (588)
                        ++.++|||||||++|||++|+.||.+.....                 .               +.....++.     
T Consensus       264 --~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (392)
T PHA03207        264 --YCAKTDIWSAGLVLFEMSVKNVTLFGKQVKSSSSQLRSIIRCMQVHPLEFPQNGSTNLCKHFKQYAIVLRPPYTIPPV  341 (392)
T ss_pred             --CCchhhHHHHHHHHHHHHHCCCCCCCCCCCCcHHHHHHHHHHhccCccccCCccchhHHHHHHhhcccccCCccccch
Confidence              4578999999999999999999997632110                 0               000001100     


Q ss_pred             --CCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccCCCC
Q psy4039         474 --NTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGATP  522 (588)
Q Consensus       474 --~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~~~  522 (588)
                        ...++.+++++|.+||..||++|||+.++++         |||+....+
T Consensus       342 ~~~~~~~~~~~~li~~ml~~dp~~Rpsa~e~l~---------~p~f~~~~~  383 (392)
T PHA03207        342 IRKYGMHMDVEYLIAKMLTFDQEFRPSAQDILS---------LPLFTKEPI  383 (392)
T ss_pred             hhccCcchhHHHHHHHHhccChhhCCCHHHHhh---------Cchhhccch
Confidence              1235678999999999999999999999999         999986544

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=100.00  E-value=3.9e-40  Score=339.74  Aligned_cols=253  Identities=23%  Similarity=0.307  Sum_probs=201.0

Q ss_pred             ccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCC
Q psy4039         194 KVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPH  271 (588)
Q Consensus       194 ~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~H  271 (588)
                      .+++|.+.+.||+|+||.||+|.+.  +..||+|.+.......                ....+.+|+.+++.+    +|
T Consensus         4 ~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~----------------~~~~~~~E~~~l~~l----~h   63 (301)
T cd07873           4 KLETYIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEG----------------APCTAIREVSLLKDL----KH   63 (301)
T ss_pred             cccceEEeeEeccCcCEEEEEEEEcCCCcEEEEEEEecccccC----------------chhHHHHHHHHHHhc----CC
Confidence            4588999999999999999999986  7899999985322111                122345689999887    99


Q ss_pred             CceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4039         272 PNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLE  351 (588)
Q Consensus       272 pNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~  351 (588)
                      |||+++++++.+..                            ..++||||+.++|.+++......+++..+..++.|+++
T Consensus        64 ~nI~~~~~~~~~~~----------------------------~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~qi~~  115 (301)
T cd07873          64 ANIVTLHDIIHTEK----------------------------SLTLVFEYLDKDLKQYLDDCGNSINMHNVKLFLFQLLR  115 (301)
T ss_pred             CCcceEEEEEecCC----------------------------eEEEEEeccccCHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence            99999999987632                            48999999999999999876557999999999999999


Q ss_pred             HHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccC
Q psy4039         352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF  431 (588)
Q Consensus       352 gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~  431 (588)
                      ||.|||+++|+||||||+|||++.+     +.++|+|||++.........     .....+++.|+|||++.+...    
T Consensus       116 aL~~lH~~~i~H~dlkp~Nil~~~~-----~~~kl~dfg~~~~~~~~~~~-----~~~~~~~~~y~~PE~~~~~~~----  181 (301)
T cd07873         116 GLNYCHRRKVLHRDLKPQNLLINER-----GELKLADFGLARAKSIPTKT-----YSNEVVTLWYRPPDILLGSTD----  181 (301)
T ss_pred             HHHHHHhCCeeCCCCCHHHEEECCC-----CcEEECcCcchhccCCCCCc-----ccccceeecccCcHHHhCCCC----
Confidence            9999999999999999999999987     78999999999764332111     113457899999999865431    


Q ss_pred             CCCCcCchhhHHHHHHHHhcCCCCCcccccccc------------------------ccccccC--------CCCCCccH
Q psy4039         432 VNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD------------------------YEVNALP--------QLNTNVPE  479 (588)
Q Consensus       432 ~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~------------------------~~~~~~~--------~~~~~~~~  479 (588)
                       ++.++|||||||++|||++|++||........                        +.....+        .....+++
T Consensus       182 -~~~~~Dv~slG~~l~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (301)
T cd07873         182 -YSTQIDMWGVGCIFYEMSTGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEFKSYNYPKYRADCLHNHAPRLDS  260 (301)
T ss_pred             -CccHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCChhhchhhhccccccccccCccccccHHhhcCCCCH
Confidence             34679999999999999999999975321000                        0000001        11235788


Q ss_pred             HHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCcccc
Q psy4039         480 VMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLY  518 (588)
Q Consensus       480 ~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~  518 (588)
                      ++++||.+||+.||.+|||++++++         |||++
T Consensus       261 ~~~~li~~ml~~dp~~R~t~~eil~---------h~~f~  290 (301)
T cd07873         261 DGAELLSKLLQFEGRKRISAEEAMK---------HPYFH  290 (301)
T ss_pred             HHHHHHHHHhcCCcccCcCHHHHhc---------Ccccc
Confidence            9999999999999999999999999         99997

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=100.00  E-value=1.2e-40  Score=350.20  Aligned_cols=254  Identities=21%  Similarity=0.244  Sum_probs=197.7

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|.+.+.||+|+||+||+|.+.  +..||||++......               ......+.+|+.+++.+    +|||
T Consensus        15 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~---------------~~~~~~~~~E~~~l~~l----~h~~   75 (343)
T cd07878          15 ERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQS---------------LIHARRTYRELRLLKHM----KHEN   75 (343)
T ss_pred             hhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCchhhh---------------hHHHHHHHHHHHHHHhc----CCCc
Confidence            78999999999999999999886  789999998431100               00122345689999987    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      |+++++++.....                      .......|++|++++++|.+++...  .+++..+..++.||+.||
T Consensus        76 iv~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~l~~~~~~~--~l~~~~~~~i~~qi~~aL  131 (343)
T cd07878          76 VIGLLDVFTPATS----------------------IENFNEVYLVTNLMGADLNNIVKCQ--KLSDEHVQFLIYQLLRGL  131 (343)
T ss_pred             hhhhhhhhccccc----------------------ccccCcEEEEeecCCCCHHHHHhcC--CCCHHHHHHHHHHHHHHH
Confidence            9999998865321                      1112248999999999999888654  799999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN  433 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~  433 (588)
                      .|||++||+||||||+|||++.+     +.+||+|||+++......        ....||+.|+|||++.+...     +
T Consensus       132 ~~LH~~~ivHrdikp~Nil~~~~-----~~~kl~Dfg~~~~~~~~~--------~~~~~t~~y~aPE~~~~~~~-----~  193 (343)
T cd07878         132 KYIHSAGIIHRDLKPSNVAVNED-----CELRILDFGLARQADDEM--------TGYVATRWYRAPEIMLNWMH-----Y  193 (343)
T ss_pred             HHHHHCCeecccCChhhEEECCC-----CCEEEcCCccceecCCCc--------CCccccccccCchHhcCCcc-----C
Confidence            99999999999999999999987     789999999998654321        14568999999999865321     4


Q ss_pred             CCcCchhhHHHHHHHHhcCCCCCcccccccccc-------------------------ccccC--------CCCCCccHH
Q psy4039         434 YSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE-------------------------VNALP--------QLNTNVPEV  480 (588)
Q Consensus       434 ~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~-------------------------~~~~~--------~~~~~~~~~  480 (588)
                      +.++|||||||++|||++|+.||.+........                         ....+        ......++.
T Consensus       194 ~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (343)
T cd07878         194 NQTVDIWSVGCIMAELLKGKALFPGNDYIDQLKRIMEVVGTPSPEVLKKISSEHARKYIQSLPHMPQQDLKKIFRGANPL  273 (343)
T ss_pred             CchhhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhcchhhHHHHhhccccccchhHHHhccCCCHH
Confidence            578999999999999999999996521100000                         00000        111245677


Q ss_pred             HHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccC
Q psy4039         481 MRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       481 l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~  519 (588)
                      +.+|+.+||+.||.+|||++++++         |||+..
T Consensus       274 ~~~li~~mL~~dp~~R~s~~ell~---------hp~~~~  303 (343)
T cd07878         274 AIDLLEKMLVLDSDKRISASEALA---------HPYFSQ  303 (343)
T ss_pred             HHHHHHHHcCCChhhCCCHHHHhc---------Ccchhc
Confidence            899999999999999999999999         999984

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=100.00  E-value=1.7e-40  Score=345.96  Aligned_cols=247  Identities=20%  Similarity=0.303  Sum_probs=195.5

Q ss_pred             eeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEEee
Q psy4039         202 KFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHF  279 (588)
Q Consensus       202 ~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l~~  279 (588)
                      +.||+|+||+||+|.+.  +..||||++.......              ......+.+|+.++..+   .+||||+++++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~--------------~~~~~~~~~e~~il~~~---~~h~~i~~~~~   63 (318)
T cd05570           1 KVLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQ--------------DDDVECTMTEKRVLALA---GKHPFLTQLHS   63 (318)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhh--------------hhHHHHHHHHHHHHHhc---cCCCCccceee
Confidence            46999999999999987  6799999985321100              00122345677777765   47999999999


Q ss_pred             eeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh
Q psy4039         280 AFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNM  358 (588)
Q Consensus       280 ~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yLH~  358 (588)
                      ++.+..                            .+++||||+ +|+|..++.... .+++.++..++.|++.||.|||+
T Consensus        64 ~~~~~~----------------------------~~~lv~e~~~~~~L~~~~~~~~-~l~~~~~~~~~~qi~~~l~~LH~  114 (318)
T cd05570          64 CFQTKD----------------------------RLFFVMEYVNGGDLMFHIQRSG-RFDEPRARFYAAEIVLGLQFLHE  114 (318)
T ss_pred             EEEcCC----------------------------EEEEEEcCCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHh
Confidence            987632                            499999999 689999887654 79999999999999999999999


Q ss_pred             CCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCCcCc
Q psy4039         359 HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSD  438 (588)
Q Consensus       359 ~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksD  438 (588)
                      ++|+||||||+|||++.+     +.+||+|||+++.......     .....+||+.|+|||++.+..      ++.++|
T Consensus       115 ~~ivH~dlkp~Nill~~~-----~~~kl~Dfg~~~~~~~~~~-----~~~~~~g~~~y~aPE~~~~~~------~~~~~D  178 (318)
T cd05570         115 RGIIYRDLKLDNVLLDSE-----GHIKIADFGMCKEGILGGV-----TTSTFCGTPDYIAPEILSYQP------YGPAVD  178 (318)
T ss_pred             CCeEccCCCHHHeEECCC-----CcEEecccCCCeecCcCCC-----cccceecCccccCHHHhcCCC------CCcchh
Confidence            999999999999999987     7899999999875322111     112456999999999997654      457899


Q ss_pred             hhhHHHHHHHHhcCCCCCcccccccccc--ccccCCCCCCccHHHHHHHHHhhhhCCCCCCCH-----HHHHHHHhhhhh
Q psy4039         439 AWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSA-----ELAATVCQLYLW  511 (588)
Q Consensus       439 VwS~Gvil~ElltG~~Pf~~~~~~~~~~--~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~-----~e~l~~L~~~~~  511 (588)
                      ||||||++|||++|+.||.+........  ......++..+++++.++|.+||+.||.+||++     .++++       
T Consensus       179 iwslGvil~~l~~G~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~s~~~~~~~~ll~-------  251 (318)
T cd05570         179 WWALGVLLYEMLAGQSPFEGDDEDELFQSILEDEVRYPRWLSKEAKSILKSFLTKNPEKRLGCLPTGEQDIKG-------  251 (318)
T ss_pred             hhhHHHHHHHHhhCCCCCCCCCHHHHHHHHHcCCCCCCCcCCHHHHHHHHHHccCCHHHcCCCCCCCHHHHhc-------
Confidence            9999999999999999997643221111  112234566789999999999999999999999     99888       


Q ss_pred             cCCccccC
Q psy4039         512 APKHWLYG  519 (588)
Q Consensus       512 ~~h~w~~~  519 (588)
                        |||++.
T Consensus       252 --~~~~~~  257 (318)
T cd05570         252 --HPFFRE  257 (318)
T ss_pred             --CCCcCC
Confidence              999974

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=100.00  E-value=3.6e-40  Score=334.00  Aligned_cols=253  Identities=18%  Similarity=0.269  Sum_probs=199.2

Q ss_pred             cccCCeEEeeeecccCceeEEEEEEC-----CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcC
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFR-----GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVEN  267 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~-----g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~  267 (588)
                      +..++|++.+.||+|+||.||+|.+.     +..||+|++......                .....+.+|+.++..+  
T Consensus         2 i~~~~~~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~----------------~~~~~~~~e~~~l~~l--   63 (266)
T cd05064           2 LDNKSIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSD----------------KQRRGFLAEALTLGQF--   63 (266)
T ss_pred             CchHHeEEeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCCH----------------HHHHHHHHHHHHHhcC--
Confidence            44578999999999999999999864     568999998532110                0123456788888876  


Q ss_pred             CCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHH
Q psy4039         268 LPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLF  346 (588)
Q Consensus       268 l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~  346 (588)
                        +||||+++++++....                            ..++||||+ +|+|.+++......+++.+++.++
T Consensus        64 --~h~~iv~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~  113 (266)
T cd05064          64 --DHSNIVRLEGVITRGN----------------------------TMMIVTEYMSNGALDSFLRKHEGQLVAGQLMGML  113 (266)
T ss_pred             --CCCCcCeEEEEEecCC----------------------------CcEEEEEeCCCCcHHHHHHhCCCCCCHHHHHHHH
Confidence              8999999999987531                            489999999 579999998765589999999999


Q ss_pred             HHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCC
Q psy4039         347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP  426 (588)
Q Consensus       347 ~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~  426 (588)
                      .|++.||+|||++|++||||||+|||++.+     +.++++|||.+.........    ......++..|+|||++.+..
T Consensus       114 ~~i~~al~~lH~~~iiH~dikp~nili~~~-----~~~~l~dfg~~~~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~  184 (266)
T cd05064         114 PGLASGMKYLSEMGYVHKGLAAHKVLVNSD-----LVCKISGFRRLQEDKSEAIY----TTMSGKSPVLWAAPEAIQYHH  184 (266)
T ss_pred             HHHHHHHHHHHHCCEeeccccHhhEEEcCC-----CcEEECCCcccccccccchh----cccCCCCceeecCHHHHhhCC
Confidence            999999999999999999999999999887     78999999987654321111    111234567899999987654


Q ss_pred             CCccCCCCCcCchhhHHHHHHHHhc-CCCCCccccccc---cccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHH
Q psy4039         427 GLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNT---DYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA  502 (588)
Q Consensus       427 ~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~---~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~  502 (588)
                            ++.++|||||||++||+++ |..||.+.....   .......++.+..+|..+.+++.+||+.+|++||+++++
T Consensus       185 ------~~~~~Di~slG~~l~ell~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~c~~~~p~~RP~~~~i  258 (266)
T cd05064         185 ------FSSASDVWSFGIVMWEVMSYGERPYWDMSGQDVIKAVEDGFRLPAPRNCPNLLHQLMLDCWQKERGERPRFSQI  258 (266)
T ss_pred             ------ccchhHHHHHHHHHHHHhcCCCCCcCcCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHcCCCchhCCCHHHH
Confidence                  4578999999999999775 999997642211   111222334567889999999999999999999999999


Q ss_pred             HHHHhh
Q psy4039         503 ATVCQL  508 (588)
Q Consensus       503 l~~L~~  508 (588)
                      ++.|..
T Consensus       259 ~~~l~~  264 (266)
T cd05064         259 HSILSK  264 (266)
T ss_pred             HHHHHh
Confidence            987653

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=100.00  E-value=3.9e-40  Score=336.62  Aligned_cols=245  Identities=22%  Similarity=0.311  Sum_probs=193.1

Q ss_pred             ecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEEeeee
Q psy4039         204 IAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAF  281 (588)
Q Consensus       204 IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l~~~~  281 (588)
                      ||+|+||+||+|.+.  ++.||||.+........              ...+.+..|+.+++.+    +||||+++++++
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~--------------~~~~~~~~E~~il~~l----~~~~i~~~~~~~   62 (280)
T cd05608           1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKKR--------------KGYEGAMVEKRILAKV----HSRFIVSLAYAF   62 (280)
T ss_pred             CCCCCceeEEEEEEccCCcEEEEEeeeHHHHhhh--------------HHHHHHHHHHHHHHhC----CCCcEeeeeEEE
Confidence            799999999999986  78999999853211000              0113345688899887    999999999888


Q ss_pred             eccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHH
Q psy4039         282 TDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRE---RCAQLSMHERVLLFTQLLEGVTHLN  357 (588)
Q Consensus       282 ~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~---~~~~l~~~~~~~i~~ql~~gL~yLH  357 (588)
                      .+.                            ..+++||||+ +|+|..++..   ....+++..+..++.||+.||.|||
T Consensus        63 ~~~----------------------------~~~~lv~e~~~~g~L~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH  114 (280)
T cd05608          63 QTK----------------------------TDLCLVMTIMNGGDLRYHIYNVDEENPGFPEPRACFYTAQIISGLEHLH  114 (280)
T ss_pred             cCC----------------------------CeEEEEEeCCCCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            753                            2489999999 5899988854   2346999999999999999999999


Q ss_pred             hCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCCcC
Q psy4039         358 MHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS  437 (588)
Q Consensus       358 ~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ks  437 (588)
                      +++|+||||||+||+++.+     +.++|+|||++.....+...     .....||+.|+|||++.+..      ++.++
T Consensus       115 ~~~i~H~dlkp~Nili~~~-----~~~~l~dfg~~~~~~~~~~~-----~~~~~g~~~y~aPE~~~~~~------~~~~~  178 (280)
T cd05608         115 QRRIIYRDLKPENVLLDND-----GNVRISDLGLAVELKDGQSK-----TKGYAGTPGFMAPELLQGEE------YDFSV  178 (280)
T ss_pred             HCCcccCCCCHHHEEECCC-----CCEEEeeCccceecCCCCcc-----ccccCCCcCccCHHHhcCCC------CCccc
Confidence            9999999999999999877     78999999999765443211     12356999999999997654      45689


Q ss_pred             chhhHHHHHHHHhcCCCCCccccccccc------cccccCCCCCCccHHHHHHHHHhhhhCCCCCC-----CHHHHHHHH
Q psy4039         438 DAWTAGTVAYEIFGHDNPFYQSARNTDY------EVNALPQLNTNVPEVMRRLVAKLLENDPSDRP-----SAELAATVC  506 (588)
Q Consensus       438 DVwS~Gvil~ElltG~~Pf~~~~~~~~~------~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rp-----s~~e~l~~L  506 (588)
                      |||||||++|||++|+.||.........      ........+..+++++.+++.+||+.||++||     +++++++  
T Consensus       179 DvwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~~l~--  256 (280)
T cd05608         179 DYFALGVTLYEMIAARGPFRARGEKVENKELKQRILNDSVTYPDKFSPASKSFCEALLAKDPEKRLGFRDGNCDGLRT--  256 (280)
T ss_pred             cHHHHHHHHHHHHhCCCCCCCCCcchhHHHHHHhhcccCCCCcccCCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHhc--
Confidence            9999999999999999999753211110      01112234567899999999999999999999     7889888  


Q ss_pred             hhhhhcCCccccC
Q psy4039         507 QLYLWAPKHWLYG  519 (588)
Q Consensus       507 ~~~~~~~h~w~~~  519 (588)
                             |||++.
T Consensus       257 -------h~~~~~  262 (280)
T cd05608         257 -------HPLFRD  262 (280)
T ss_pred             -------Chhhhc
Confidence                   999975

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=100.00  E-value=2.6e-40  Score=352.66  Aligned_cols=260  Identities=22%  Similarity=0.250  Sum_probs=201.4

Q ss_pred             CCccccccCCeEEeeeecccCceeEEEEEEC-------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHH
Q psy4039         188 PDVDDVKVDDIQIGKFIAKGTNAVVYEATFR-------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDM  260 (588)
Q Consensus       188 ~~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~  260 (588)
                      ...+.+..++|++++.||+|+||.||+|++.       +..||||++......                ...+.+.+|+.
T Consensus        27 ~~~~~~~~~~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~----------------~~~~~~~~Ei~   90 (375)
T cd05104          27 DHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHL----------------TEREALMSELK   90 (375)
T ss_pred             ccccccchHHeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcCc----------------HHHHHHHHHHH
Confidence            3456677789999999999999999999752       568999998532111                01234567999


Q ss_pred             HHhhhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc-----
Q psy4039         261 LMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC-----  334 (588)
Q Consensus       261 il~~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~-----  334 (588)
                      ++..+   .+|||||+++++|.+..                            ..++||||+ +|+|.+++....     
T Consensus        91 il~~l---~~HpnIv~l~~~~~~~~----------------------------~~~lv~E~~~~g~L~~~l~~~~~~~~~  139 (375)
T cd05104          91 VLSYL---GNHINIVNLLGACTVGG----------------------------PTLVITEYCCYGDLLNFLRRKRDSFIC  139 (375)
T ss_pred             HHHHh---cCCcceeeeeeeeccCC----------------------------cceeeehhccCCcHHHHHHhccccccc
Confidence            99876   47999999999987632                            389999999 689999986531     


Q ss_pred             ---------------------------------------------------------------------CCCCHHHHHHH
Q psy4039         335 ---------------------------------------------------------------------AQLSMHERVLL  345 (588)
Q Consensus       335 ---------------------------------------------------------------------~~l~~~~~~~i  345 (588)
                                                                                           ..+++..+..+
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  219 (375)
T cd05104         140 PKHEDHAEAALYKNLLHQREMSCDSLNEYMDMKPGVSYVVPTKADKRRSVRSGSYIDQDVTSEILEEDELALDTEDLLSF  219 (375)
T ss_pred             ccccchhhhHHHHhhhhhhcccchhhhhhhhcCCCcccccccccccccccccceecccccHHHHHhccCCCCCHHHHHHH
Confidence                                                                                 14788899999


Q ss_pred             HHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcC
Q psy4039         346 FTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALAT  425 (588)
Q Consensus       346 ~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~  425 (588)
                      +.||++||.|||+++|+||||||+|||++.+     ..+||+|||+++..........   .....++..|+|||++.+.
T Consensus       220 ~~qi~~~l~~lH~~~ivH~Dlkp~Nill~~~-----~~~kl~DfG~a~~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~  291 (375)
T cd05104         220 SYQVAKGMSFLASKNCIHRDLAARNILLTHG-----RITKICDFGLARDIRNDSNYVV---KGNARLPVKWMAPESIFNC  291 (375)
T ss_pred             HHHHHHHHHHHHHCCeeccCCchhhEEEECC-----CcEEEecCccceeccCcccccc---cCCCCCCcceeChhHhcCC
Confidence            9999999999999999999999999999877     7899999999986544221111   1123456789999999765


Q ss_pred             CCCccCCCCCcCchhhHHHHHHHHhc-CCCCCccccccc----cccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHH
Q psy4039         426 PGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNT----DYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE  500 (588)
Q Consensus       426 ~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~----~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~  500 (588)
                      .      ++.++|||||||++|||++ |..||.......    .......+..+...|.++++|+.+||+.||++|||+.
T Consensus       292 ~------~~~~sDi~slG~~l~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~  365 (375)
T cd05104         292 V------YTFESDVWSYGILLWEIFSLGSSPYPGMPVDSKFYKMIKEGYRMLSPECAPSEMYDIMKSCWDADPLKRPTFK  365 (375)
T ss_pred             C------CCCCCCHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHhCccCCCCCCCCHHHHHHHHHHccCChhHCcCHH
Confidence            4      4578999999999999997 889986532211    1111222334556788999999999999999999999


Q ss_pred             HHHHHHhh
Q psy4039         501 LAATVCQL  508 (588)
Q Consensus       501 e~l~~L~~  508 (588)
                      ++++.|+.
T Consensus       366 eil~~l~~  373 (375)
T cd05104         366 QIVQLIEQ  373 (375)
T ss_pred             HHHHHHHh
Confidence            99997764

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=4e-40  Score=362.01  Aligned_cols=252  Identities=21%  Similarity=0.292  Sum_probs=201.3

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC---CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR---GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPH  271 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~---g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~H  271 (588)
                      ...|.+.+.||+|+||.||+|...   +..||+|.+...+    ..             ....+.+|+.+++.+    +|
T Consensus        66 ~~~y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~----~~-------------~~~~~~~E~~~l~~l----~H  124 (478)
T PTZ00267         66 EHMYVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLND----ER-------------QAAYARSELHCLAAC----DH  124 (478)
T ss_pred             ceeEEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCC----HH-------------HHHHHHHHHHHHHhC----CC
Confidence            355999999999999999999875   5678999763211    00             112345688999887    99


Q ss_pred             CceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh---cCCCCHHHHHHHHH
Q psy4039         272 PNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER---CAQLSMHERVLLFT  347 (588)
Q Consensus       272 pNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~---~~~l~~~~~~~i~~  347 (588)
                      ||||+++++|.+..                            .+|+||||+ +|+|.+++...   ...+++.++..++.
T Consensus       125 pniv~~~~~~~~~~----------------------------~~~lv~E~~~gg~L~~~l~~~~~~~~~l~~~~~~~i~~  176 (478)
T PTZ00267        125 FGIVKHFDDFKSDD----------------------------KLLLIMEYGSGGDLNKQIKQRLKEHLPFQEYEVGLLFY  176 (478)
T ss_pred             CCEeEEEEEEEECC----------------------------EEEEEEECCCCCCHHHHHHHHHhccCCCCHHHHHHHHH
Confidence            99999999987632                            599999999 68999988753   33689999999999


Q ss_pred             HHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCC
Q psy4039         348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG  427 (588)
Q Consensus       348 ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~  427 (588)
                      |++.||.|||+++|+||||||+|||++.+     +.+||+|||+++.........   .....+||+.|+|||++.+.. 
T Consensus       177 qi~~aL~~lH~~~ivHrDlkp~NIll~~~-----~~~kL~DFgla~~~~~~~~~~---~~~~~~gt~~y~aPE~~~~~~-  247 (478)
T PTZ00267        177 QIVLALDEVHSRKMMHRDLKSANIFLMPT-----GIIKLGDFGFSKQYSDSVSLD---VASSFCGTPYYLAPELWERKR-  247 (478)
T ss_pred             HHHHHHHHHHhCCEEECCcCHHhEEECCC-----CcEEEEeCcCceecCCccccc---cccccCCCccccCHhHhCCCC-
Confidence            99999999999999999999999999987     789999999998765432211   112467999999999997654 


Q ss_pred             CccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccc---cccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHH
Q psy4039         428 LFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY---EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAAT  504 (588)
Q Consensus       428 ~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~---~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~  504 (588)
                           ++.++|||||||++|||++|+.||.........   .....++.+..++.+++++|.+||+.||++||++++++.
T Consensus       248 -----~~~~~Dv~slG~~l~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~~~l~  322 (478)
T PTZ00267        248 -----YSKKADMWSLGVILYELLTLHRPFKGPSQREIMQQVLYGKYDPFPCPVSSGMKALLDPLLSKNPALRPTTQQLLH  322 (478)
T ss_pred             -----CCcHHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCccCCHHHHHHHHHHhccChhhCcCHHHHHh
Confidence                 457899999999999999999999764322111   112233456678999999999999999999999999988


Q ss_pred             HHhhhhhcCCcccc
Q psy4039         505 VCQLYLWAPKHWLY  518 (588)
Q Consensus       505 ~L~~~~~~~h~w~~  518 (588)
                               |+|++
T Consensus       323 ---------~~~~~  327 (478)
T PTZ00267        323 ---------TEFLK  327 (478)
T ss_pred             ---------CHHHH
Confidence                     77765

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=100.00  E-value=2.2e-40  Score=350.92  Aligned_cols=256  Identities=21%  Similarity=0.311  Sum_probs=197.7

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||.||+|.+.  ++.||||++.......              ......+.+|+.++..+    +|||
T Consensus         1 ~~f~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~--------------~~~~~~~~~e~~~l~~l----~~~~   62 (360)
T cd05627           1 DDFESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLE--------------KEQVAHIRAERDILVEA----DGAW   62 (360)
T ss_pred             CCceEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhh--------------hhhHHHHHHHHHHHHhC----CCCC
Confidence            47899999999999999999986  7899999985311100              00123456688888887    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++++.+..                            .+|+||||+ +|+|.+++...+ .+++..+..++.|++.|
T Consensus        63 iv~~~~~~~~~~----------------------------~~~lv~E~~~gg~L~~~l~~~~-~l~~~~~~~~~~qi~~~  113 (360)
T cd05627          63 VVKMFYSFQDKR----------------------------NLYLIMEFLPGGDMMTLLMKKD-TLSEEATQFYIAETVLA  113 (360)
T ss_pred             EeeEEEEEEcCC----------------------------EEEEEEeCCCCccHHHHHHhcC-CCCHHHHHHHHHHHHHH
Confidence            999999987632                            499999999 689999997654 79999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccc------------------------------
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQ------------------------------  402 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~------------------------------  402 (588)
                      |.|||++||+||||||+|||++.+     +.+||+|||+++.........                              
T Consensus       114 L~~lH~~givHrDLkp~NIli~~~-----~~vkL~DfG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (360)
T cd05627         114 IDAIHQLGFIHRDIKPDNLLLDAK-----GHVKLSDFGLCTGLKKAHRTEFYRNLTHNPPSDFSFQNMNSKRKAETWKKN  188 (360)
T ss_pred             HHHHHHCCeEccCCCHHHEEECCC-----CCEEEeeccCCcccccccccccccccccCCccccccccccccccccccccc
Confidence            999999999999999999999887     899999999987543211000                              


Q ss_pred             cccccccccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccccc----cccCCCC--CC
Q psy4039         403 YSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV----NALPQLN--TN  476 (588)
Q Consensus       403 ~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~----~~~~~~~--~~  476 (588)
                      ........+||+.|+|||++.+..      ++.++|||||||++|||++|+.||.+......+..    .....++  ..
T Consensus       189 ~~~~~~~~~gt~~Y~APE~~~~~~------~~~~~DiwSlGvilyel~tG~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~  262 (360)
T cd05627         189 RRQLAYSTVGTPDYIAPEVFMQTG------YNKLCDWWSLGVIMYEMLIGYPPFCSETPQETYRKVMNWKETLVFPPEVP  262 (360)
T ss_pred             ccccccccCCCccccCHHHHcCCC------CCCcceeccccceeeecccCCCCCCCCCHHHHHHHHHcCCCceecCCCCC
Confidence            000012357999999999997665      45789999999999999999999976433221111    0111122  24


Q ss_pred             ccHHHHHHHHHhhhhCCCCCCC---HHHHHHHHhhhhhcCCccccC
Q psy4039         477 VPEVMRRLVAKLLENDPSDRPS---AELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       477 ~~~~l~~Li~~~L~~dP~~Rps---~~e~l~~L~~~~~~~h~w~~~  519 (588)
                      +++++++||.+|+. ||.+|++   ++++++         |||++.
T Consensus       263 ~s~~~~~li~~l~~-~p~~R~~~~~~~ei~~---------hp~f~~  298 (360)
T cd05627         263 ISEKAKDLILRFCT-DSENRIGSNGVEEIKS---------HPFFEG  298 (360)
T ss_pred             CCHHHHHHHHHhcc-ChhhcCCCCCHHHHhc---------CCCCCC
Confidence            78899999999874 9999985   678777         999974

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=100.00  E-value=3.3e-40  Score=351.40  Aligned_cols=262  Identities=21%  Similarity=0.306  Sum_probs=201.9

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCC
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENL  268 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l  268 (588)
                      ..+..++|++.+.||+|+||.||+|.+.  ++.||+|++......           .   ......+.+|+.+++.+   
T Consensus        38 ~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~-----------~---~~~~~~~~~e~~i~~~~---  100 (371)
T cd05622          38 LRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMI-----------K---RSDSAFFWEERDIMAFA---  100 (371)
T ss_pred             cCcchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhh-----------h---hHHHHHHHHHHHHHHhC---
Confidence            4555689999999999999999999997  789999998531110           0   00123456788888876   


Q ss_pred             CCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHH
Q psy4039         269 PPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFT  347 (588)
Q Consensus       269 ~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~  347 (588)
                       +||||+++++++.+.                            ..+|+||||+ +|+|.+++...  .+++..+..++.
T Consensus       101 -~hp~iv~~~~~~~~~----------------------------~~~~lv~Ey~~gg~L~~~~~~~--~~~~~~~~~~~~  149 (371)
T cd05622         101 -NSPWVVQLFYAFQDD----------------------------RYLYMVMEYMPGGDLVNLMSNY--DVPEKWARFYTA  149 (371)
T ss_pred             -CCCCCCeEEEEEEcC----------------------------CEEEEEEcCCCCCcHHHHHHhc--CCCHHHHHHHHH
Confidence             999999999998763                            2499999999 68999999765  789999999999


Q ss_pred             HHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCC
Q psy4039         348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG  427 (588)
Q Consensus       348 ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~  427 (588)
                      ||+.||.|||++||+||||||+|||++.+     +.+||+|||+|+........    .....+||+.|||||++.+...
T Consensus       150 qi~~aL~~LH~~~ivHrDLkp~NIll~~~-----~~ikL~DfG~a~~~~~~~~~----~~~~~~gt~~y~aPE~l~~~~~  220 (371)
T cd05622         150 EVVLALDAIHSMGFIHRDVKPDNMLLDKS-----GHLKLADFGTCMKMNKEGMV----RCDTAVGTPDYISPEVLKSQGG  220 (371)
T ss_pred             HHHHHHHHHHHCCEEeCCCCHHHEEECCC-----CCEEEEeCCceeEcCcCCcc----cccCcccCccccCHHHHhccCC
Confidence            99999999999999999999999999987     89999999999875432111    1124679999999999976532


Q ss_pred             CccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccccc----cccC--CCCCCccHHHHHHHHHhhhhCCCC--CCCH
Q psy4039         428 LFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV----NALP--QLNTNVPEVMRRLVAKLLENDPSD--RPSA  499 (588)
Q Consensus       428 ~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~----~~~~--~~~~~~~~~l~~Li~~~L~~dP~~--Rps~  499 (588)
                      .  ..++.++|||||||++|||++|..||........+..    ....  +.+..++.+++++|..||..++.+  |+++
T Consensus       221 ~--~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~~~~r~~r~~~  298 (371)
T cd05622         221 D--GYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMNHKNSLTFPDDNDISKEAKNLICAFLTDREVRLGRNGV  298 (371)
T ss_pred             C--ccCCCccceeehhHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCcccCCCcCCCCHHHHHHHHHHcCChhhhcCCCCH
Confidence            1  1145789999999999999999999986432211111    1111  123468999999999999843332  7899


Q ss_pred             HHHHHHHhhhhhcCCccccCC
Q psy4039         500 ELAATVCQLYLWAPKHWLYGA  520 (588)
Q Consensus       500 ~e~l~~L~~~~~~~h~w~~~~  520 (588)
                      +++++         |+|++..
T Consensus       299 ~ei~~---------h~~~~~~  310 (371)
T cd05622         299 EEIKR---------HLFFKND  310 (371)
T ss_pred             HHHhc---------CcccCCC
Confidence            99888         9998753

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=5e-40  Score=336.69  Aligned_cols=251  Identities=24%  Similarity=0.322  Sum_probs=200.6

Q ss_pred             CeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCce
Q psy4039         197 DIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNV  274 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNI  274 (588)
                      +|++.+.||+|+||.||++.+.  ++.||||++.......              ......+.+|+.+++.+    +||||
T Consensus         1 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~--------------~~~~~~~~~E~~~l~~l----~h~~i   62 (285)
T cd05605           1 TFRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKK--------------RKGEAMALNEKQILEKV----NSRFV   62 (285)
T ss_pred             CceEEEEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhh--------------hhhHHHHHHHHHHHHhc----CCCCE
Confidence            4788999999999999999986  7899999985311110              00223456799999887    99999


Q ss_pred             EEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh-cCCCCHHHHHHHHHHHHHH
Q psy4039         275 VVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER-CAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       275 V~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~-~~~l~~~~~~~i~~ql~~g  352 (588)
                      +++++++.+..                            .+++||||+ +|+|.+++... ...+++..+..++.|++.|
T Consensus        63 v~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~  114 (285)
T cd05605          63 VSLAYAYETKD----------------------------ALCLVLTLMNGGDLKFHIYNMGNPGFDEERAVFYAAEITCG  114 (285)
T ss_pred             eeeeeeecCCC----------------------------eEEEEEeccCCCcHHHHHHhcCcCCCCHHHHHHHHHHHHHH
Confidence            99999887532                            499999999 58999888754 2369999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||+++|+||||||+||+++++     +.++|+|||++.....+...      ....||+.|+|||++.+..      
T Consensus       115 l~~lH~~~ivH~dlkp~Nil~~~~-----~~~~l~Dfg~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~------  177 (285)
T cd05605         115 LEDLHRERIVYRDLKPENILLDDY-----GHIRISDLGLAVEIPEGETI------RGRVGTVGYMAPEVVKNER------  177 (285)
T ss_pred             HHHHHHCCcEecCCCHHHEEECCC-----CCEEEeeCCCceecCCCCcc------ccccCCCCccCcHHhcCCC------
Confidence            999999999999999999999987     78999999999775432211      1346899999999997654      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCccccccccc------cccccCCCCCCccHHHHHHHHHhhhhCCCCCC-----CHHH
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY------EVNALPQLNTNVPEVMRRLVAKLLENDPSDRP-----SAEL  501 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~------~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rp-----s~~e  501 (588)
                      ++.++||||+||++|||++|..||.+.......      ........+..+++.+.+|+.+||+.||.+||     ++++
T Consensus       178 ~~~~~Diws~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~  257 (285)
T cd05605         178 YTFSPDWWGLGCLIYEMIEGKSPFRQRKEKVKREEVERRVKEDQEEYSEKFSEAARSICRQLLTKDPGFRLGCRGEGAEE  257 (285)
T ss_pred             CCccccchhHHHHHHHHHHCCCCCCCCchhhHHHHHHHHhhhcccccCcccCHHHHHHHHHHccCCHHHhcCCCCCCHHH
Confidence            457899999999999999999999764221110      11222344567899999999999999999999     8999


Q ss_pred             HHHHHhhhhhcCCccccC
Q psy4039         502 AATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       502 ~l~~L~~~~~~~h~w~~~  519 (588)
                      +++         |||+..
T Consensus       258 l~~---------~~~~~~  266 (285)
T cd05605         258 VKA---------HPFFRT  266 (285)
T ss_pred             Hhc---------CcCccC
Confidence            888         999964

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=100.00  E-value=2.8e-40  Score=344.95  Aligned_cols=246  Identities=25%  Similarity=0.363  Sum_probs=190.1

Q ss_pred             eeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHH-HHhhhcCCCCCCceEEEe
Q psy4039         202 KFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDM-LMNSVENLPPHPNVVVMH  278 (588)
Q Consensus       202 ~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~-il~~l~~l~~HpNIV~l~  278 (588)
                      +.||+|+||+||+|.+.  ++.||||++........              .....+..|.. +++.+    +||||++++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~--------------~~~~~~~~e~~~~~~~l----~hp~iv~~~   62 (323)
T cd05575           1 KVIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKK--------------KEQKHIMAERNVLLKNV----KHPFLVGLH   62 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhh--------------hHHHHHHHHHHHHHhhC----CCCCCCCee
Confidence            46999999999999996  78999999853211000              01112233443 44444    899999999


Q ss_pred             eeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q psy4039         279 FAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLN  357 (588)
Q Consensus       279 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yLH  357 (588)
                      +++.+..                            ..++||||+ +|+|..++.... .+++..+..++.||+.||.|||
T Consensus        63 ~~~~~~~----------------------------~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH  113 (323)
T cd05575          63 YSFQTAD----------------------------KLYFVLDYVNGGELFFHLQRER-SFPEPRARFYAAEIASALGYLH  113 (323)
T ss_pred             EEEEeCC----------------------------EEEEEEcCCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH
Confidence            9887632                            489999999 579999987654 7999999999999999999999


Q ss_pred             hCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCCcC
Q psy4039         358 MHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS  437 (588)
Q Consensus       358 ~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ks  437 (588)
                      ++||+||||||+|||++.+     +.+||+|||+++......     ......+||+.|+|||++.+..      ++.++
T Consensus       114 ~~givH~dikp~NIll~~~-----~~~kl~Dfg~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~------~~~~~  177 (323)
T cd05575         114 SLNIIYRDLKPENILLDSQ-----GHVVLTDFGLCKEGIEHS-----KTTSTFCGTPEYLAPEVLRKQP------YDRTV  177 (323)
T ss_pred             HCCeEeCCCCHHHeEECCC-----CcEEEeccCCCcccccCC-----CccccccCChhhcChhhhcCCC------CCccc
Confidence            9999999999999999987     799999999987532211     1112457999999999997654      45789


Q ss_pred             chhhHHHHHHHHhcCCCCCcccccccccc--ccccCCCCCCccHHHHHHHHHhhhhCCCCCCCH----HHHHHHHhhhhh
Q psy4039         438 DAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSA----ELAATVCQLYLW  511 (588)
Q Consensus       438 DVwS~Gvil~ElltG~~Pf~~~~~~~~~~--~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~----~e~l~~L~~~~~  511 (588)
                      |||||||++|||++|..||........+.  ......++..+++++.++|.+||+.||.+||++    .++++       
T Consensus       178 DvwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~il~-------  250 (323)
T cd05575         178 DWWCLGAVLYEMLYGLPPFYSRDTAEMYDNILNKPLRLKPNISVSARHLLEGLLQKDRTKRLGAKDDFLEIKN-------  250 (323)
T ss_pred             cccccchhhhhhhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhhcCHHhCCCCCCCHHHHHc-------
Confidence            99999999999999999997643222111  112234556789999999999999999999997    46666       


Q ss_pred             cCCccccC
Q psy4039         512 APKHWLYG  519 (588)
Q Consensus       512 ~~h~w~~~  519 (588)
                        |||+..
T Consensus       251 --~~~~~~  256 (323)
T cd05575         251 --HVFFSS  256 (323)
T ss_pred             --CCCcCC
Confidence              999864

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=100.00  E-value=4.1e-40  Score=343.89  Aligned_cols=252  Identities=19%  Similarity=0.268  Sum_probs=196.8

Q ss_pred             CeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCce
Q psy4039         197 DIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNV  274 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNI  274 (588)
                      +|++.+.||+|+||.||+|.+.  ++.||||++.......              ....+.+..|+.++..+   ..|++|
T Consensus         1 ~f~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~--------------~~~~~~~~~e~~~l~~~---~~~~~i   63 (323)
T cd05615           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQ--------------DDDVECTMVEKRVLALQ---DKPPFL   63 (323)
T ss_pred             CceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhh--------------hhHHHHHHHHHHHHHhc---cCCCch
Confidence            4788899999999999999986  7899999985311100              00122344577777665   457888


Q ss_pred             EEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         275 VVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       275 V~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      +++++++.+..                            .+|+||||+ +|+|.+++.... .+++.++..++.|++.||
T Consensus        64 ~~~~~~~~~~~----------------------------~~~lv~Ey~~~g~L~~~i~~~~-~l~~~~~~~i~~qi~~al  114 (323)
T cd05615          64 TQLHSCFQTVD----------------------------RLYFVMEYVNGGDLMYHIQQVG-KFKEPQAVFYAAEISVGL  114 (323)
T ss_pred             hheeeEEecCC----------------------------EEEEEEcCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHH
Confidence            89998887632                            499999999 689999997654 799999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN  433 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~  433 (588)
                      .|||++||+||||||+|||++.+     +.+||+|||+++.......     ......||+.|+|||++.+..      +
T Consensus       115 ~~lH~~~ivHrDikp~Nill~~~-----~~ikL~Dfg~~~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~------~  178 (323)
T cd05615         115 FFLHRRGIIYRDLKLDNVMLDSE-----GHIKIADFGMCKEHMVDGV-----TTRTFCGTPDYIAPEIIAYQP------Y  178 (323)
T ss_pred             HHHHHCCeeccCCCHHHeEECCC-----CCEEEeccccccccCCCCc-----cccCccCCccccCHHHHcCCC------C
Confidence            99999999999999999999987     7899999999875432111     112456999999999997654      4


Q ss_pred             CCcCchhhHHHHHHHHhcCCCCCcccccccccc--ccccCCCCCCccHHHHHHHHHhhhhCCCCCCCH-----HHHHHHH
Q psy4039         434 YSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSA-----ELAATVC  506 (588)
Q Consensus       434 ~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~--~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~-----~e~l~~L  506 (588)
                      +.++||||+||++|||++|+.||.+........  .......+..++.++.+++.+||+.||.+|++.     +++.+  
T Consensus       179 ~~~~DiwslGvil~elltG~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~i~~--  256 (323)
T cd05615         179 GKSVDWWAYGVLLYEMLAGQPPFDGEDEDELFQSIMEHNVSYPKSLSKEAVSICKGLMTKHPSKRLGCGPEGERDIRE--  256 (323)
T ss_pred             CCccchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCccCCHHHHHHHHHHcccCHhhCCCCCCCCHHHHhc--
Confidence            578999999999999999999997643222111  112234566789999999999999999999984     56665  


Q ss_pred             hhhhhcCCccccC
Q psy4039         507 QLYLWAPKHWLYG  519 (588)
Q Consensus       507 ~~~~~~~h~w~~~  519 (588)
                             |||++.
T Consensus       257 -------h~~f~~  262 (323)
T cd05615         257 -------HAFFRR  262 (323)
T ss_pred             -------CcccCC
Confidence                   999874

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=100.00  E-value=7.6e-40  Score=338.12  Aligned_cols=252  Identities=19%  Similarity=0.195  Sum_probs=194.1

Q ss_pred             ccCCeEEeeeecccCceeEEEEEEC------------------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchh
Q psy4039         194 KVDDIQIGKFIAKGTNAVVYEATFR------------------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLR  255 (588)
Q Consensus       194 ~~~~~~~~~~IG~G~fG~Vy~a~~~------------------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~  255 (588)
                      ..++|.+.+.||+|+||.||+|.+.                  +..||||.+.....   .             .....+
T Consensus         3 ~~~~~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~---~-------------~~~~~~   66 (304)
T cd05096           3 PRGHLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDAN---K-------------NARNDF   66 (304)
T ss_pred             chhhCeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCC---H-------------HHHHHH
Confidence            4478999999999999999999863                  34799999853211   0             012346


Q ss_pred             hhHHHHHhhhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc
Q psy4039         256 LNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC  334 (588)
Q Consensus       256 ~~Ei~il~~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~  334 (588)
                      .+|+.++..+    +||||+++++++.+..                            ..+++|||+ +|+|.+++....
T Consensus        67 ~~E~~~l~~l----~h~niv~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~  114 (304)
T cd05096          67 LKEVKILSRL----KDPNIIRLLGVCVDED----------------------------PLCMITEYMENGDLNQFLSSHH  114 (304)
T ss_pred             HHHHHHHhhc----CCCCeeEEEEEEecCC----------------------------ceEEEEecCCCCcHHHHHHhcc
Confidence            6789999887    9999999999987632                            389999999 689999996531


Q ss_pred             ------------------CCCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccC
Q psy4039         335 ------------------AQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNK  396 (588)
Q Consensus       335 ------------------~~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~  396 (588)
                                        ..+++..+..++.||+.||.|||++||+||||||+|||++.+     +.+||+|||+++...
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~ivH~dlkp~Nill~~~-----~~~kl~DfG~~~~~~  189 (304)
T cd05096         115 LDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSSLNFVHRDLATRNCLVGEN-----LTIKIADFGMSRNLY  189 (304)
T ss_pred             ccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHCCccccCcchhheEEcCC-----ccEEECCCccceecc
Confidence                              246888999999999999999999999999999999999987     789999999998654


Q ss_pred             CCCccccccccccccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc--CCCCCccccccccc---------
Q psy4039         397 SGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG--HDNPFYQSARNTDY---------  465 (588)
Q Consensus       397 ~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt--G~~Pf~~~~~~~~~---------  465 (588)
                      .+....   ......++..|||||++.+..      ++.++|||||||++|||++  +..||.........         
T Consensus       190 ~~~~~~---~~~~~~~~~~y~aPE~~~~~~------~~~~~Dv~slG~~l~el~~~~~~~p~~~~~~~~~~~~~~~~~~~  260 (304)
T cd05096         190 AGDYYR---IQGRAVLPIRWMAWECILMGK------FTTASDVWAFGVTLWEILMLCKEQPYGELTDEQVIENAGEFFRD  260 (304)
T ss_pred             cCceeE---ecCcCCCCccccCHHHHhcCC------CCchhhhHHHHHHHHHHHHccCCCCCCcCCHHHHHHHHHHHhhh
Confidence            322111   112345688999999987654      4578999999999999986  56787653211110         


Q ss_pred             -cccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHh
Q psy4039         466 -EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       466 -~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~  507 (588)
                       ........+..+|..+.+++.+||+.||++|||++++.+.|+
T Consensus       261 ~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~RPs~~~i~~~l~  303 (304)
T cd05096         261 QGRQVYLFRPPPCPQGLYELMLQCWSRDCRERPSFSDIHAFLT  303 (304)
T ss_pred             ccccccccCCCCCCHHHHHHHHHHccCCchhCcCHHHHHHHHh
Confidence             011112234578899999999999999999999999987654

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=7.8e-40  Score=342.91  Aligned_cols=259  Identities=23%  Similarity=0.339  Sum_probs=198.5

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||.||++.+.  ++.||||++.+....           +   ......+.+|+.++..+    +|||
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~-----------~---~~~~~~~~~e~~~l~~~----~~~~   62 (331)
T cd05597           1 DDFEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEML-----------K---RAETACFREERDVLVNG----DRRW   62 (331)
T ss_pred             CCceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHh-----------h---hhhHHHHHHHHHHHHhC----CCCC
Confidence            57999999999999999999987  789999998531100           0   01223456688888776    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |++++++|.+..                            .+|+||||+ +|+|.+++......+++..+..++.||+.|
T Consensus        63 i~~~~~~~~~~~----------------------------~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~qi~~~  114 (331)
T cd05597          63 ITNLHYAFQDEN----------------------------NLYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVLA  114 (331)
T ss_pred             CCceEEEEecCC----------------------------eEEEEEecCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            999999987632                            499999999 689999998755589999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||+++|+||||||+|||++.+     +.+||+|||++..........    ....+||+.|||||++...... ...
T Consensus       115 l~~lH~~~ivH~dlkp~Nill~~~-----~~~kl~Dfg~~~~~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~-~~~  184 (331)
T cd05597         115 IDSVHQLGYVHRDIKPDNVLLDKN-----GHIRLADFGSCLRLLADGTVQ----SNVAVGTPDYISPEILQAMEDG-KGR  184 (331)
T ss_pred             HHHHHhCCeEECCCCHHHEEECCC-----CCEEEEECCceeecCCCCCcc----ccceeccccccCHHHHhhcccc-ccC
Confidence            999999999999999999999887     789999999987654322111    1134699999999999743211 011


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcccccccccc-------ccccCCCCCCccHHHHHHHHHhhhhCCC--CCCCHHHHH
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE-------VNALPQLNTNVPEVMRRLVAKLLENDPS--DRPSAELAA  503 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~-------~~~~~~~~~~~~~~l~~Li~~~L~~dP~--~Rps~~e~l  503 (588)
                      ++.++|||||||++|||++|+.||.+......+.       ....+.....+++++++++++||..+++  .|+++++++
T Consensus       185 ~~~~~DiwslG~~l~el~~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~li~~ll~~~~~r~~r~~~~~~l  264 (331)
T cd05597         185 YGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHKEHFQFPPDVTDVSEEAKDLIRRLICSPETRLGRNGLQDFK  264 (331)
T ss_pred             CCCcceeehhhhHHHHHhhCCCCCCCCCHHHHHHHHHcCCCcccCCCccCCCCHHHHHHHHHHccCcccccCCCCHHHHh
Confidence            4568999999999999999999997642211110       1112223345799999999998865443  378999999


Q ss_pred             HHHhhhhhcCCccccC
Q psy4039         504 TVCQLYLWAPKHWLYG  519 (588)
Q Consensus       504 ~~L~~~~~~~h~w~~~  519 (588)
                      +         |||+..
T Consensus       265 ~---------hp~~~~  271 (331)
T cd05597         265 D---------HPFFEG  271 (331)
T ss_pred             c---------CCCCCC
Confidence            9         999964

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>PHA03209 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=4.9e-40  Score=348.15  Aligned_cols=243  Identities=28%  Similarity=0.396  Sum_probs=192.3

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      .+|++.+.||+|+||.||+|.+.  +..||+|+...                       .....|+.+++.+    +|||
T Consensus        66 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~-----------------------~~~~~E~~~l~~l----~h~~  118 (357)
T PHA03209         66 LGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQK-----------------------GTTLIEAMLLQNV----NHPS  118 (357)
T ss_pred             cCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCc-----------------------cccHHHHHHHHhC----CCCC
Confidence            57999999999999999999997  56899997521                       1223588888887    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      |+++++++.+..                            ..++|||++.++|.+++......+++.++..|+.||+.||
T Consensus       119 iv~~~~~~~~~~----------------------------~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~i~~qi~~aL  170 (357)
T PHA03209        119 VIRMKDTLVSGA----------------------------ITCMVLPHYSSDLYTYLTKRSRPLPIDQALIIEKQILEGL  170 (357)
T ss_pred             CcChhheEEeCC----------------------------eeEEEEEccCCcHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence            999999987632                            4899999999999999987666899999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN  433 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~  433 (588)
                      .|||++||+||||||+|||++.+     +.+||+|||+++......      ......||+.|+|||++.+..      +
T Consensus       171 ~~LH~~~ivHrDlkp~Nill~~~-----~~~kl~DfG~a~~~~~~~------~~~~~~gt~~y~aPE~~~~~~------~  233 (357)
T PHA03209        171 RYLHAQRIIHRDVKTENIFINDV-----DQVCIGDLGAAQFPVVAP------AFLGLAGTVETNAPEVLARDK------Y  233 (357)
T ss_pred             HHHHHCCeecCCCCHHHEEECCC-----CCEEEecCccccccccCc------ccccccccccccCCeecCCCC------C
Confidence            99999999999999999999987     789999999997532211      112456999999999997654      4


Q ss_pred             CCcCchhhHHHHHHHHhcCCCCCccccccc-------------------cccccccC--------------------C--
Q psy4039         434 YSKSDAWTAGTVAYEIFGHDNPFYQSARNT-------------------DYEVNALP--------------------Q--  472 (588)
Q Consensus       434 ~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~-------------------~~~~~~~~--------------------~--  472 (588)
                      +.++|||||||++|||+++..|+.......                   .......+                    +  
T Consensus       234 ~~~~DiwSlGvvl~ell~~~~~~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (357)
T PHA03209        234 NSKADIWSAGIVLFEMLAYPSTIFEDPPSTPEEYVKSCHSHLLKIISTLKVHPEEFPRDPGSRLVRGFIEYASLERQPYT  313 (357)
T ss_pred             CchhhHHHHHHHHHHHHHcCCccccCCCCcHHHHHHHHHHHHHHHHHHhccChhhcCCCCccHHHHHHHhhcccCCCccc
Confidence            578999999999999998655543210000                   00000000                    0  


Q ss_pred             -----CCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccC
Q psy4039         473 -----LNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       473 -----~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~  519 (588)
                           ....++.++.+||.+||+.||.+|||+.|+++         ||||+.
T Consensus       314 ~~~~~~~~~~~~~~~~li~~mL~~dP~~Rpta~e~l~---------hp~f~~  356 (357)
T PHA03209        314 RYPCFQRVNLPIDGEFLVHKMLTFDAAMRPSAEEILN---------YPMFAQ  356 (357)
T ss_pred             ccHHHhccCCCchHHHHHHHHHcCCcccCcCHHHHhc---------Cchhcc
Confidence                 01245677888999999999999999999999         999863

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=2.3e-40  Score=344.66  Aligned_cols=245  Identities=23%  Similarity=0.343  Sum_probs=194.2

Q ss_pred             eeecccCceeEEEEEEC-----CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEE
Q psy4039         202 KFIAKGTNAVVYEATFR-----GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVV  276 (588)
Q Consensus       202 ~~IG~G~fG~Vy~a~~~-----g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~  276 (588)
                      +.||+|+||.||++...     ++.||||++......               ........+|+.+++.+    +||||++
T Consensus         2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~---------------~~~~~~~~~E~~~l~~l----~h~niv~   62 (318)
T cd05582           2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLK---------------VRDRVRTKMERDILAEV----NHPFIVK   62 (318)
T ss_pred             ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhh---------------hhhHHHHHHHHHHHHhC----CCCCccc
Confidence            57999999999998763     789999998531110               00122345688899887    9999999


Q ss_pred             EeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q psy4039         277 MHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTH  355 (588)
Q Consensus       277 l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~y  355 (588)
                      +++++.+.                            ..+|+||||+ +|+|.+++.... .+++..+..++.||++||.|
T Consensus        63 ~~~~~~~~----------------------------~~~~lv~e~~~~~~L~~~l~~~~-~l~~~~~~~~~~qi~~~l~~  113 (318)
T cd05582          63 LHYAFQTE----------------------------GKLYLILDFLRGGDLFTRLSKEV-MFTEEDVKFYLAELALALDH  113 (318)
T ss_pred             EEEEEEcC----------------------------CEEEEEEcCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHH
Confidence            99998763                            1489999999 689999997654 79999999999999999999


Q ss_pred             HHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCC
Q psy4039         356 LNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS  435 (588)
Q Consensus       356 LH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~  435 (588)
                      ||+++|+||||||+|||++.+     +.+||+|||+++.......     ......||+.|+|||++.+..      ++.
T Consensus       114 lH~~~i~H~dlkp~Nil~~~~-----~~~kL~Dfg~~~~~~~~~~-----~~~~~~g~~~y~aPE~~~~~~------~~~  177 (318)
T cd05582         114 LHSLGIIYRDLKPENILLDEE-----GHIKLTDFGLSKESIDHEK-----KAYSFCGTVEYMAPEVVNRRG------HTQ  177 (318)
T ss_pred             HHHCCEecCCCCHHHeEECCC-----CcEEEeeccCCcccCCCCC-----ceecccCChhhcCHHHHcCCC------CCC
Confidence            999999999999999999987     7899999999876533211     112467999999999997654      457


Q ss_pred             cCchhhHHHHHHHHhcCCCCCcccccccccc--ccccCCCCCCccHHHHHHHHHhhhhCCCCCCC-----HHHHHHHHhh
Q psy4039         436 KSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVAKLLENDPSDRPS-----AELAATVCQL  508 (588)
Q Consensus       436 ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~--~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps-----~~e~l~~L~~  508 (588)
                      ++|||||||++|||++|+.||..........  ......++..+++++.+++.+||+.||++||+     +++++.    
T Consensus       178 ~~DiwslG~il~el~tg~~p~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~~l~~~P~~R~~a~~~~~~~~~~----  253 (318)
T cd05582         178 SADWWSFGVLMFEMLTGSLPFQGKDRKETMTMILKAKLGMPQFLSPEAQSLLRALFKRNPANRLGAGPDGVEEIKR----  253 (318)
T ss_pred             ccceeccceEeeeeccCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhhcCHhHcCCCCCCCHHHHhC----
Confidence            8999999999999999999997643221111  11223456678999999999999999999999     455555    


Q ss_pred             hhhcCCccccC
Q psy4039         509 YLWAPKHWLYG  519 (588)
Q Consensus       509 ~~~~~h~w~~~  519 (588)
                           |||+..
T Consensus       254 -----~~~~~~  259 (318)
T cd05582         254 -----HPFFST  259 (318)
T ss_pred             -----CCCcCC
Confidence                 999864

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>PHA03211 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=9e-40  Score=355.94  Aligned_cols=247  Identities=23%  Similarity=0.349  Sum_probs=195.4

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      ..+|.+.+.||+|+||.||+|.+.  ++.||||...                       ...+.+|+.+++.+    +||
T Consensus       168 ~~gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~-----------------------~~~~~~E~~iL~~L----~Hp  220 (461)
T PHA03211        168 GLGFAIHRALTPGSEGCVFESSHPDYPQRVVVKAGW-----------------------YASSVHEARLLRRL----SHP  220 (461)
T ss_pred             cCCeEEEEEEccCCCeEEEEEEECCCCCEEEEeccc-----------------------ccCHHHHHHHHHHC----CCC
Confidence            468999999999999999999997  6789999641                       12235699999987    999


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |||++++++....                            ..+++||++.++|.+++......+++.++..|+.||+.|
T Consensus       221 nIv~l~~~~~~~~----------------------------~~~lv~e~~~~~L~~~l~~~~~~l~~~~~~~i~~qi~~a  272 (461)
T PHA03211        221 AVLALLDVRVVGG----------------------------LTCLVLPKYRSDLYTYLGARLRPLGLAQVTAVARQLLSA  272 (461)
T ss_pred             CCCcEEEEEEECC----------------------------EEEEEEEccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence            9999999887631                            489999999999999998765579999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||++||+||||||+|||++.+     +.+||+|||+++.........   ......||+.|||||++.+..      
T Consensus       273 L~yLH~~gIvHrDLKP~NILl~~~-----~~vkL~DFGla~~~~~~~~~~---~~~~~~GT~~Y~APE~~~~~~------  338 (461)
T PHA03211        273 IDYIHGEGIIHRDIKTENVLVNGP-----EDICLGDFGAACFARGSWSTP---FHYGIAGTVDTNAPEVLAGDP------  338 (461)
T ss_pred             HHHHHHCCEEECcCCHHHEEECCC-----CCEEEcccCCceecccccccc---cccccCCCcCCcCHHHHcCCC------
Confidence            999999999999999999999987     789999999998754322111   112457999999999997654      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcccccc----------------ccccccccC---------------------CC--
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARN----------------TDYEVNALP---------------------QL--  473 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~----------------~~~~~~~~~---------------------~~--  473 (588)
                      ++.++|||||||++|||++|..|+......                ........+                     ..  
T Consensus       339 ~~~~sDvwSlGviL~El~~g~~~lf~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  418 (461)
T PHA03211        339 YTPSVDIWSAGLVIFEAAVHTASLFSASRGDERRPYDAQILRIIRQAQVHVDEFPQHAGSRLVSQYRHRAARNRRPAYTR  418 (461)
T ss_pred             CCchHHHHHHHHHHHHHHHcCCCcccCCcccccCCcHHHHHHHHHhhccccccCCCCcchHHHHHHHhhhhcccCCccCC
Confidence            457899999999999999987665431100                000000000                     00  


Q ss_pred             --C---CCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccC
Q psy4039         474 --N---TNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       474 --~---~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~  519 (588)
                        +   ..++.++.+||.+||+.||.+|||+.|+++         ||||+.
T Consensus       419 ~~~~~~~~~~~~~~dli~~mL~~DP~~RPsa~elL~---------hp~f~~  460 (461)
T PHA03211        419 PAWTRYYKLDLDVEYLVCRALTFDGARRPSAAELLR---------LPLFQS  460 (461)
T ss_pred             cchhhhccccchHHHHHHHHcccChhhCcCHHHHhh---------CcccCC
Confidence              0   134568999999999999999999999999         999963

>PTZ00284 protein kinase; Provisional

Probab=100.00  E-value=4.9e-40  Score=360.49  Aligned_cols=260  Identities=19%  Similarity=0.227  Sum_probs=193.8

Q ss_pred             ccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcC--CC
Q psy4039         194 KVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVEN--LP  269 (588)
Q Consensus       194 ~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~--l~  269 (588)
                      ..++|++.+.||+|+||+||+|.+.  ++.||||++++...                  .......|+.+++.+..  ..
T Consensus       127 ~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~~------------------~~~~~~~e~~~l~~l~~~~~~  188 (467)
T PTZ00284        127 STQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVPK------------------YTRDAKIEIQFMEKVRQADPA  188 (467)
T ss_pred             CCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEecchh------------------hHHHHHHHHHHHHHHhhcCcc
Confidence            3478999999999999999999986  78899999853110                  11123346666666532  12


Q ss_pred             CCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4039         270 PHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQL  349 (588)
Q Consensus       270 ~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql  349 (588)
                      .|++|++++++|...                           ...+++|||+++++|.+++...+ .+++..+..|+.||
T Consensus       189 ~~~~i~~i~~~~~~~---------------------------~~~~~iv~~~~g~~l~~~l~~~~-~l~~~~~~~i~~qi  240 (467)
T PTZ00284        189 DRFPLMKIQRYFQNE---------------------------TGHMCIVMPKYGPCLLDWIMKHG-PFSHRHLAQIIFQT  240 (467)
T ss_pred             cCcceeeeEEEEEcC---------------------------CceEEEEEeccCCCHHHHHHHcC-CCCHHHHHHHHHHH
Confidence            567799999888652                           12489999999999999997764 79999999999999


Q ss_pred             HHHHHHHHh-CCceeccCCCCcEEEcCCCCC-----------CCCceeeeccccccccCCCCccccccccccccCCcccc
Q psy4039         350 LEGVTHLNM-HRTAHRDLKSDNILLDCSEDN-----------TCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALM  417 (588)
Q Consensus       350 ~~gL~yLH~-~~IvHrDLKp~NILld~~~~~-----------~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~  417 (588)
                      +.||.|||+ .|||||||||+|||++.+...           ....+||+|||.+......        ....+||+.||
T Consensus       241 ~~aL~yLH~~~gIiHrDlKP~NILl~~~~~~~~~~~~~~~~~~~~~vkl~DfG~~~~~~~~--------~~~~~gt~~Y~  312 (467)
T PTZ00284        241 GVALDYFHTELHLMHTDLKPENILMETSDTVVDPVTNRALPPDPCRVRICDLGGCCDERHS--------RTAIVSTRHYR  312 (467)
T ss_pred             HHHHHHHHhcCCeecCCCCHHHEEEecCCcccccccccccCCCCceEEECCCCccccCccc--------cccccCCcccc
Confidence            999999998 599999999999999865310           1135999999988543221        12467999999


Q ss_pred             chhHHhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccccc---------------------------c--c
Q psy4039         418 APEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE---------------------------V--N  468 (588)
Q Consensus       418 APE~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~---------------------------~--~  468 (588)
                      |||++.+..      ++.++|||||||++|||++|+.||.+........                           .  .
T Consensus       313 APE~~~~~~------~~~~~DiwSlGvil~elltG~~pf~~~~~~~~~~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~  386 (467)
T PTZ00284        313 SPEVVLGLG------WMYSTDMWSMGCIIYELYTGKLLYDTHDNLEHLHLMEKTLGRLPSEWAGRCGTEEARLLYNSAGQ  386 (467)
T ss_pred             CcHHhhcCC------CCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHcCCCCHHHHhhccchhHHHHhhhccc
Confidence            999998765      4578999999999999999999996532110000                           0  0


Q ss_pred             ccCCC--------------C-CCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccCCCC
Q psy4039         469 ALPQL--------------N-TNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGATP  522 (588)
Q Consensus       469 ~~~~~--------------~-~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~~~  522 (588)
                      ..+..              . ....+.+.+||.+||+.||.+|||++|+++         ||||....+
T Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~R~ta~e~L~---------Hp~~~~~~~  446 (467)
T PTZ00284        387 LRPCTDPKHLARIARARPVREVIRDDLLCDLIYGLLHYDRQKRLNARQMTT---------HPYVLKYYP  446 (467)
T ss_pred             ccccCCHHHHHhhhcccchhhhhchHHHHHHHHHhCCcChhhCCCHHHHhc---------CccccccCC
Confidence            00000              0 011355789999999999999999999999         999985544

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=100.00  E-value=1.4e-39  Score=337.54  Aligned_cols=251  Identities=24%  Similarity=0.295  Sum_probs=188.5

Q ss_pred             eeeecccCceeEEEEEEC----CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEE
Q psy4039         201 GKFIAKGTNAVVYEATFR----GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVV  276 (588)
Q Consensus       201 ~~~IG~G~fG~Vy~a~~~----g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~  276 (588)
                      +.+||+|+||.||+|+..    +..||+|.+....                   ....+.+|+.+++.+    +||||++
T Consensus         6 g~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~-------------------~~~~~~~E~~~l~~l----~h~niv~   62 (317)
T cd07867           6 GCKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTG-------------------ISMSACREIALLREL----KHPNVIA   62 (317)
T ss_pred             ceEeccCCCeeEEEEEecCCCccceEEEEEecCCC-------------------CcHHHHHHHHHHHhC----CCCCeee
Confidence            468999999999999975    4789999984311                   112345689999987    9999999


Q ss_pred             EeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHh--------cCCCCHHHHHHHHHH
Q psy4039         277 MHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRER--------CAQLSMHERVLLFTQ  348 (588)
Q Consensus       277 l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~--------~~~l~~~~~~~i~~q  348 (588)
                      +++++....                          ...++++|||++++|.+++...        ...+++..+..++.|
T Consensus        63 ~~~~~~~~~--------------------------~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~q  116 (317)
T cd07867          63 LQKVFLSHS--------------------------DRKVWLLFDYAEHDLWHIIKFHRASKANKKPMQLPRSMVKSLLYQ  116 (317)
T ss_pred             EEEEEeccC--------------------------CCeEEEEEeeeCCcHHHHHHhhhccccCCCCccCCHHHHHHHHHH
Confidence            999986521                          2248999999998999888632        125889999999999


Q ss_pred             HHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCC
Q psy4039         349 LLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGL  428 (588)
Q Consensus       349 l~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~  428 (588)
                      |+.||.|||+++|+||||||+|||++.+.... +.+||+|||+|+........  ........||+.|+|||++.+... 
T Consensus       117 i~~aL~~lH~~~ivH~Dlkp~Nil~~~~~~~~-~~~kl~DfG~a~~~~~~~~~--~~~~~~~~~t~~y~aPE~~~~~~~-  192 (317)
T cd07867         117 ILDGIHYLHANWVLHRDLKPANILVMGEGPER-GRVKIADMGFARLFNSPLKP--LADLDPVVVTFWYRAPELLLGARH-  192 (317)
T ss_pred             HHHHHHHHHhCCEEcCCCCHHHEEEccCCCCC-CcEEEeeccceeccCCCccc--ccccCcceecccccCcHHhcCCCc-
Confidence            99999999999999999999999996442222 78999999999876543211  111124578999999999875431 


Q ss_pred             ccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccc------------------------ccc----c------------
Q psy4039         429 FSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD------------------------YEV----N------------  468 (588)
Q Consensus       429 ~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~------------------------~~~----~------------  468 (588)
                          ++.++|||||||++|||++|.+||........                        +..    .            
T Consensus       193 ----~~~~~DiwSlG~il~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (317)
T cd07867         193 ----YTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPFHHDQLDRIFSVMGFPADKDWEDIRKMPEYPTLQKDFRRT  268 (317)
T ss_pred             ----cCcHHHHHhHHHHHHHHHhCCCCcccccccccccccccHHHHHHHHHhcCCCChhhhhhhhhcccchhhhhhhccc
Confidence                45679999999999999999999964211000                        000    0            


Q ss_pred             ---------ccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccc
Q psy4039         469 ---------ALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWL  517 (588)
Q Consensus       469 ---------~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~  517 (588)
                               .........+..+.+|+.+||+.||.+|||++|+++         |||+
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~dP~~R~t~~e~l~---------hp~f  317 (317)
T cd07867         269 TYANSSLIKYMEKHKVKPDSKVFLLLQKLLTMDPTKRITSEQALQ---------DPYF  317 (317)
T ss_pred             ccCCchhhhhhhcccCCCChHHHHHHHHHhccCcccccCHHHHhc---------CCCC
Confidence                     000001123456889999999999999999999999         9996

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=100.00  E-value=1e-39  Score=342.17  Aligned_cols=259  Identities=22%  Similarity=0.334  Sum_probs=198.3

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||.||++.++  ++.||+|++.+...           ..   ......+.+|+.++..+    +|||
T Consensus         1 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~-----------~~---~~~~~~~~~e~~~l~~~----~~~~   62 (332)
T cd05623           1 EDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEM-----------LK---RAETACFREERDVLVNG----DNQW   62 (332)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHH-----------HH---hhHHHHHHHHHHHHhhC----CCCC
Confidence            47899999999999999999987  67899999842110           00   01123456688888776    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++++.+..                            .+|+||||+ +|+|.+++......+++..+..++.||+.|
T Consensus        63 i~~~~~~~~~~~----------------------------~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~~~~qi~~a  114 (332)
T cd05623          63 ITTLHYAFQDEN----------------------------NLYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVIA  114 (332)
T ss_pred             EeeEEEEEecCC----------------------------EEEEEEeccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            999999987632                            499999999 689999998755589999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||+++|+||||||+|||++.+     +.+||+|||+++.........    ....+||+.|||||++.+.... ...
T Consensus       115 l~~lH~~~iiHrDlkp~Nili~~~-----~~~kL~DfG~a~~~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~-~~~  184 (332)
T cd05623         115 IDSVHQLHYVHRDIKPDNILMDMN-----GHIRLADFGSCLKLMEDGTVQ----SSVAVGTPDYISPEILQAMEDG-KGK  184 (332)
T ss_pred             HHHHHHCCeEecCCCHHHEEECCC-----CCEEEeecchheecccCCcce----ecccccCccccCHHHHhccccC-CCC
Confidence            999999999999999999999977     789999999997653321111    1135799999999998642110 011


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcccccccccc-------ccccCCCCCCccHHHHHHHHHhhhhCCC--CCCCHHHHH
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE-------VNALPQLNTNVPEVMRRLVAKLLENDPS--DRPSAELAA  503 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~-------~~~~~~~~~~~~~~l~~Li~~~L~~dP~--~Rps~~e~l  503 (588)
                      ++.++|||||||++|||++|+.||........+.       ....+.....+++++++|+.+||..++.  .|+++++++
T Consensus       185 ~~~~~DvwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~~s~~~~~li~~ll~~~~~r~~r~~~~~~~  264 (332)
T cd05623         185 YGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHKERFQFPAQVTDVSEDAKDLIRRLICSREHRLGQNGIEDFK  264 (332)
T ss_pred             CCCcCCEEeeHHHHHHHhcCCCCCCCCCHHHHHHHHhCCCccccCCCccccCCHHHHHHHHHHccChhhhcCCCCHHHHh
Confidence            4578999999999999999999997642211111       1112333356799999999999965444  368999999


Q ss_pred             HHHhhhhhcCCccccC
Q psy4039         504 TVCQLYLWAPKHWLYG  519 (588)
Q Consensus       504 ~~L~~~~~~~h~w~~~  519 (588)
                      +         |||+..
T Consensus       265 ~---------h~~f~~  271 (332)
T cd05623         265 Q---------HPFFTG  271 (332)
T ss_pred             C---------CCCcCC
Confidence            8         999974

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=100.00  E-value=6.4e-40  Score=343.00  Aligned_cols=247  Identities=19%  Similarity=0.281  Sum_probs=193.9

Q ss_pred             eeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEEee
Q psy4039         202 KFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHF  279 (588)
Q Consensus       202 ~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l~~  279 (588)
                      +.||+|+||.||+|.+.  ++.||||++........              .....+.+|+.++..+   ..||||+++++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~--------------~~~~~~~~e~~~~~~~---~~~~~i~~~~~   63 (327)
T cd05617           1 RVIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDD--------------EDIDWVQTEKHVFEQA---SSNPFLVGLHS   63 (327)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhh--------------hHHHHHHHHHHHHHhh---cCCCCEeeEEE
Confidence            46999999999999986  68999999953211100              0123355678887776   57999999999


Q ss_pred             eeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh
Q psy4039         280 AFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNM  358 (588)
Q Consensus       280 ~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yLH~  358 (588)
                      ++.+..                            .+|+||||+ +|+|..++.... .+++..+..++.||+.||.|||+
T Consensus        64 ~~~~~~----------------------------~~~lv~e~~~~~~L~~~~~~~~-~l~~~~~~~~~~qi~~al~~lH~  114 (327)
T cd05617          64 CFQTTS----------------------------RLFLVIEYVNGGDLMFHMQRQR-KLPEEHARFYAAEICIALNFLHE  114 (327)
T ss_pred             EEEeCC----------------------------EEEEEEeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence            987632                            499999999 689999887654 79999999999999999999999


Q ss_pred             CCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCCcCc
Q psy4039         359 HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSD  438 (588)
Q Consensus       359 ~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksD  438 (588)
                      +||+||||||+|||++.+     +.+||+|||+++.......     .....+||+.|+|||++.+..      ++.++|
T Consensus       115 ~~ivHrDlkp~Nili~~~-----~~~kl~Dfg~~~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~------~~~~~D  178 (327)
T cd05617         115 RGIIYRDLKLDNVLLDAD-----GHIKLTDYGMCKEGLGPGD-----TTSTFCGTPNYIAPEILRGEE------YGFSVD  178 (327)
T ss_pred             CCeeccCCCHHHEEEeCC-----CCEEEeccccceeccCCCC-----ceecccCCcccCCHHHHCCCC------CCchhe
Confidence            999999999999999987     7899999999875322111     112467999999999997654      457899


Q ss_pred             hhhHHHHHHHHhcCCCCCcccccccc---------ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCC------HHHHH
Q psy4039         439 AWTAGTVAYEIFGHDNPFYQSARNTD---------YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS------AELAA  503 (588)
Q Consensus       439 VwS~Gvil~ElltG~~Pf~~~~~~~~---------~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps------~~e~l  503 (588)
                      ||||||++|||++|..||........         ........++..++..+.+++.+||+.||.+|++      +++++
T Consensus       179 iwslGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~i~  258 (327)
T cd05617         179 WWALGVLMFEMMAGRSPFDIITDNPDMNTEDYLFQVILEKPIRIPRFLSVKASHVLKGFLNKDPKERLGCQPQTGFSDIK  258 (327)
T ss_pred             eehhHHHHHHHHhCCCCCCccCCCcccccHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhccCHHHcCCCCCCCCHHHHH
Confidence            99999999999999999964211110         0112223466778999999999999999999998      46877


Q ss_pred             HHHhhhhhcCCccccC
Q psy4039         504 TVCQLYLWAPKHWLYG  519 (588)
Q Consensus       504 ~~L~~~~~~~h~w~~~  519 (588)
                      +         |||+..
T Consensus       259 ~---------h~~f~~  265 (327)
T cd05617         259 S---------HTFFRS  265 (327)
T ss_pred             c---------CCCCCC
Confidence            7         999874

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>KOG0194|consensus

Probab=100.00  E-value=2.1e-40  Score=352.69  Aligned_cols=268  Identities=21%  Similarity=0.280  Sum_probs=216.5

Q ss_pred             ccccCCCccccccCCeEEeeeecccCceeEEEEEEC---C---eeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhh
Q psy4039         183 QVETLPDVDDVKVDDIQIGKFIAKGTNAVVYEATFR---G---VEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRL  256 (588)
Q Consensus       183 ~~~~~~~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~---g---~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~  256 (588)
                      ...+....|++..++..+.+.||+|+||.||+|+++   +   .+||||.......              ........+.
T Consensus       144 ~~PI~r~~Wel~H~~v~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~--------------~~~~~~~e~m  209 (474)
T KOG0194|consen  144 KRPIPRQKWELSHSDIELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSE--------------LTKEQIKEFM  209 (474)
T ss_pred             cccccccccEEeccCccccceeecccccEEEEEEEEecCCceeeeeEEEeeccccc--------------ccHHHHHHHH
Confidence            345567889999999999999999999999999997   2   2389999853110              1111345677


Q ss_pred             hHHHHHhhhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcC
Q psy4039         257 NEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCA  335 (588)
Q Consensus       257 ~Ei~il~~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~  335 (588)
                      +|.++|+.+    +|||||++||++.+..|                            +++|||+| +|+|.+||++.+.
T Consensus       210 ~EArvMr~l----~H~NVVr~yGVa~~~~P----------------------------l~ivmEl~~gGsL~~~L~k~~~  257 (474)
T KOG0194|consen  210 KEARVMRQL----NHPNVVRFYGVAVLEEP----------------------------LMLVMELCNGGSLDDYLKKNKK  257 (474)
T ss_pred             HHHHHHHhC----CCCCEEEEEEEEcCCCc----------------------------cEEEEEecCCCcHHHHHHhCCC
Confidence            899999997    99999999999998765                            99999999 6899999999866


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCcc
Q psy4039         336 QLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVA  415 (588)
Q Consensus       336 ~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~  415 (588)
                      .++..+...++.+.+.||+|||++++|||||-++|+|++.+     ..+||+|||+++.-.......     ...--...
T Consensus       258 ~v~~~ek~~~~~~AA~Gl~YLh~k~~IHRDIAARNcL~~~~-----~~vKISDFGLs~~~~~~~~~~-----~~~klPir  327 (474)
T KOG0194|consen  258 SLPTLEKLRFCYDAARGLEYLHSKNCIHRDIAARNCLYSKK-----GVVKISDFGLSRAGSQYVMKK-----FLKKLPIR  327 (474)
T ss_pred             CCCHHHHHHHHHHHHhHHHHHHHCCCcchhHhHHHheecCC-----CeEEeCccccccCCcceeecc-----ccccCcce
Confidence            79999999999999999999999999999999999999987     678999999987643211100     01123568


Q ss_pred             ccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCccccc----cccccccccCCCCCCccHHHHHHHHHhhh
Q psy4039         416 LMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSAR----NTDYEVNALPQLNTNVPEVMRRLVAKLLE  490 (588)
Q Consensus       416 Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~----~~~~~~~~~~~~~~~~~~~l~~Li~~~L~  490 (588)
                      |+|||.+....      ++.++|||||||++||+++ |..||.+...    ..........+.+...|.++..++.+||.
T Consensus       328 WLAPEtl~~~~------~s~kTDV~sfGV~~~Eif~~g~~Py~g~~~~~v~~kI~~~~~r~~~~~~~p~~~~~~~~~c~~  401 (474)
T KOG0194|consen  328 WLAPETLNTGI------FSFKTDVWSFGVLLWEIFENGAEPYPGMKNYEVKAKIVKNGYRMPIPSKTPKELAKVMKQCWK  401 (474)
T ss_pred             ecChhhhccCc------cccccchhheeeeEEeeeccCCCCCCCCCHHHHHHHHHhcCccCCCCCCCHHHHHHHHHHhcc
Confidence            99999997663      6689999999999999998 7889987422    11113344455677889999999999999


Q ss_pred             hCCCCCCCHHHHHHHHhhhhhc
Q psy4039         491 NDPSDRPSAELAATVCQLYLWA  512 (588)
Q Consensus       491 ~dP~~Rps~~e~l~~L~~~~~~  512 (588)
                      .||++||+|.++.+.++...-.
T Consensus       402 ~~p~~R~tm~~i~~~l~~~~~~  423 (474)
T KOG0194|consen  402 KDPEDRPTMSTIKKKLEALEKK  423 (474)
T ss_pred             CChhhccCHHHHHHHHHHHHhc
Confidence            9999999999999988765433

>KOG0596|consensus

Probab=100.00  E-value=6.2e-40  Score=342.24  Aligned_cols=261  Identities=23%  Similarity=0.235  Sum_probs=202.6

Q ss_pred             cccCCeEEeeeecccCceeEEEEEEC-CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCC
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPH  271 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~-g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~H  271 (588)
                      +.-..|++.++||+||.+.||++... .+.||+|++...               +.......-+.+||.+|.+|   ..|
T Consensus       358 Vkg~~Yeilk~iG~GGSSkV~kV~~s~~~iyalkkv~~~---------------~~D~qtl~gy~nEI~lL~KL---kg~  419 (677)
T KOG0596|consen  358 VKGREYEILKQIGSGGSSKVFKVLNSDKQIYALKKVVLL---------------EADNQTLDGYRNEIALLNKL---KGH  419 (677)
T ss_pred             ECcchhhHHHhhcCCCcceeeeeecCCCcchhhhHHHHh---------------hcCHHHHHHHHHHHHHHHHh---cCC
Confidence            33356999999999999999999986 467888876321               11122334577899999998   689


Q ss_pred             CceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4039         272 PNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLE  351 (588)
Q Consensus       272 pNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~  351 (588)
                      .+||+|++|-..+                            +.+|+|||+.+.+|.++|++....+....+..+..||+.
T Consensus       420 ~~IIqL~DYEv~d----------------------------~~lYmvmE~Gd~DL~kiL~k~~~~~~~~~lk~ywkqML~  471 (677)
T KOG0596|consen  420 DKIIQLYDYEVTD----------------------------GYLYMVMECGDIDLNKILKKKKSIDPDWFLKFYWKQMLL  471 (677)
T ss_pred             ceEEEEeeeeccC----------------------------ceEEEEeecccccHHHHHHhccCCCchHHHHHHHHHHHH
Confidence            9999999985542                            249999999999999999987545554589999999999


Q ss_pred             HHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCC---
Q psy4039         352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGL---  428 (588)
Q Consensus       352 gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~---  428 (588)
                      |+.++|.+||||.||||.|+|+-.      |.+||+|||.|..+......   -.....+||+.||+||.+......   
T Consensus       472 aV~~IH~~gIVHSDLKPANFLlVk------G~LKLIDFGIA~aI~~DTTs---I~kdsQvGT~NYMsPEAl~~~~s~~~~  542 (677)
T KOG0596|consen  472 AVKTIHQHGIVHSDLKPANFLLVK------GRLKLIDFGIANAIQPDTTS---IVKDSQVGTVNYMSPEALTDMSSSREN  542 (677)
T ss_pred             HHHHHHHhceeecCCCcccEEEEe------eeEEeeeechhcccCccccc---eeeccccCcccccCHHHHhhccccccC
Confidence            999999999999999999999975      58999999999987664322   122367899999999999754332   


Q ss_pred             --ccCCCCCcCchhhHHHHHHHHhcCCCCCcccc-ccccc-------cccccCCCCCCccHHHHHHHHHhhhhCCCCCCC
Q psy4039         429 --FSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSA-RNTDY-------EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS  498 (588)
Q Consensus       429 --~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~-~~~~~-------~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps  498 (588)
                        .....+.++||||+|||||+|+.|++||..-. ....+       .....|.++..  .++.++++.||.+||.+||+
T Consensus       543 ~~~k~Ki~r~SDvWSLGCILYqMvYgktPf~~~~n~~aKl~aI~~P~~~Iefp~~~~~--~~li~~mK~CL~rdPkkR~s  620 (677)
T KOG0596|consen  543 GKSKIKISRKSDVWSLGCILYQMVYGKTPFGQIINQIAKLHAITDPNHEIEFPDIPEN--DELIDVMKCCLARDPKKRWS  620 (677)
T ss_pred             CCcceeecCccchhhhhhHHHHHHhcCCchHHHHHHHHHHHhhcCCCccccccCCCCc--hHHHHHHHHHHhcCcccCCC
Confidence              22235578999999999999999999997621 11111       11122233322  23999999999999999999


Q ss_pred             HHHHHHHHhhhhhcCCccccC
Q psy4039         499 AELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       499 ~~e~l~~L~~~~~~~h~w~~~  519 (588)
                      ..++|+         |||++.
T Consensus       621 i~eLLq---------hpFl~~  632 (677)
T KOG0596|consen  621 IPELLQ---------HPFLQI  632 (677)
T ss_pred             cHHHhc---------Cccccc
Confidence            999998         999975

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=100.00  E-value=1.9e-39  Score=331.13  Aligned_cols=262  Identities=20%  Similarity=0.203  Sum_probs=203.0

Q ss_pred             cccCCeEEeeeecccCceeEEEEEEC--Ce----eEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhc
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFR--GV----EYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVE  266 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~----~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~  266 (588)
                      +..++|++.+.||+|+||+||+|.+.  +.    .||+|.+....    ...            ....+..|+.++..+ 
T Consensus         4 ~~~~~~~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~----~~~------------~~~~~~~~~~~l~~l-   66 (279)
T cd05111           4 LKETELRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRS----GRQ------------TFQEITDHMLAMGSL-   66 (279)
T ss_pred             CCHhhceeccccCccCCcceEEEEEcCCCCceeeEEEEeeccccc----chH------------HHHHHHHHHHHHhcC-
Confidence            34478999999999999999999985  33    47777763210    000            112334466666665 


Q ss_pred             CCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHH
Q psy4039         267 NLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLL  345 (588)
Q Consensus       267 ~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i  345 (588)
                         .||||+++++++...                             ..++++||+ +|+|.+++......+++..+..+
T Consensus        67 ---~h~~iv~~~~~~~~~-----------------------------~~~~i~e~~~~gsL~~~l~~~~~~~~~~~~~~i  114 (279)
T cd05111          67 ---DHAYIVRLLGICPGA-----------------------------SLQLVTQLSPLGSLLDHVRQHRDSLDPQRLLNW  114 (279)
T ss_pred             ---CCCCcceEEEEECCC-----------------------------ccEEEEEeCCCCcHHHHHHhcccCCCHHHHHHH
Confidence               899999999986431                             267889998 68999999876668999999999


Q ss_pred             HHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcC
Q psy4039         346 FTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALAT  425 (588)
Q Consensus       346 ~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~  425 (588)
                      +.|++.||.|||+++++||||||+|||++.+     +.+||+|||+++..........   .....|+..|+|||++.+.
T Consensus       115 ~~qi~~~l~~lH~~~iiH~dlkp~nili~~~-----~~~kl~Dfg~~~~~~~~~~~~~---~~~~~~~~~y~~pE~~~~~  186 (279)
T cd05111         115 CVQIAKGMYYLEEHRMVHRNLAARNILLKSD-----SIVQIADFGVADLLYPDDKKYF---YSEHKTPIKWMALESILFG  186 (279)
T ss_pred             HHHHHHHHHHHHHCCEeccccCcceEEEcCC-----CcEEEcCCccceeccCCCcccc---cCCCCCcccccCHHHhccC
Confidence            9999999999999999999999999999987     7899999999986543221111   1134577899999999765


Q ss_pred             CCCccCCCCCcCchhhHHHHHHHHhc-CCCCCccccccc---cccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHH
Q psy4039         426 PGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNT---DYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAEL  501 (588)
Q Consensus       426 ~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~---~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e  501 (588)
                      .      ++.++|||||||++|||++ |..||.+.....   .......+..+..++.++.+++.+||..||++|||+.+
T Consensus       187 ~------~~~~~Dv~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~c~~~~p~~Rps~~e  260 (279)
T cd05111         187 R------YTHQSDVWSYGVTVWEMMSYGAEPYAGMRPHEVPDLLEKGERLAQPQICTIDVYMVMVKCWMIDENVRPTFKE  260 (279)
T ss_pred             C------cCchhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHCCCcCCCCCCCCHHHHHHHHHHcCCCcccCcCHHH
Confidence            4      4578999999999999998 999997642211   11222333445567889999999999999999999999


Q ss_pred             HHHHHhhhhhcCCccc
Q psy4039         502 AATVCQLYLWAPKHWL  517 (588)
Q Consensus       502 ~l~~L~~~~~~~h~w~  517 (588)
                      +++.+..+.-.+.+|+
T Consensus       261 l~~~l~~~~~~~~~~~  276 (279)
T cd05111         261 LANEFTRMARDPPRYL  276 (279)
T ss_pred             HHHHHHHHHhCCccee
Confidence            9999988888887776

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>KOG1026|consensus

Probab=100.00  E-value=1.8e-40  Score=363.86  Aligned_cols=261  Identities=25%  Similarity=0.301  Sum_probs=213.5

Q ss_pred             CccccccCCeEEeeeecccCceeEEEEEEC-------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHH
Q psy4039         189 DVDDVKVDDIQIGKFIAKGTNAVVYEATFR-------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDML  261 (588)
Q Consensus       189 ~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~i  261 (588)
                      ...+++..+.+..+.||+|.||+||+|...       ..-||||.++...                ....+++|++|+++
T Consensus       479 ~~~~i~r~~i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a----------------~~~~~~dF~REaeL  542 (774)
T KOG1026|consen  479 KVLEIPRSDIVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKA----------------ENQARQDFRREAEL  542 (774)
T ss_pred             ceeEechhheeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccc----------------cHHHHHHHHHHHHH
Confidence            344677788899999999999999999987       4579999985321                11145788999999


Q ss_pred             HhhhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc------
Q psy4039         262 MNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC------  334 (588)
Q Consensus       262 l~~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~------  334 (588)
                      +..+    +|||||+|+|+|.+..|                            +++|+||| .|||.+||+.+.      
T Consensus       543 la~l----~H~nIVrLlGVC~~~~P----------------------------~~MvFEYm~~GDL~eFLra~sP~a~~~  590 (774)
T KOG1026|consen  543 LAEL----QHPNIVRLLGVCREGDP----------------------------LCMVFEYMDHGDLHEFLRARSPKADKL  590 (774)
T ss_pred             HHhc----cCCCeEEEEEEEccCCe----------------------------eEEEEEecccccHHHHHHhhCCccccc
Confidence            9998    99999999999998654                            99999999 699999998531      


Q ss_pred             ---CC----CCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCcccccccc
Q psy4039         335 ---AQ----LSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD  407 (588)
Q Consensus       335 ---~~----l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~  407 (588)
                         ..    |+..+.+.|+.|||.|++||-++.+|||||-.+|+||.++     ..|||+|||++|..-........   
T Consensus       591 ~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~~~FVHRDLATRNCLVge~-----l~VKIsDfGLsRdiYssDYYk~~---  662 (774)
T KOG1026|consen  591 ASGQDTPPPLSTSQFLHIATQIAAGMEYLSSHHFVHRDLATRNCLVGEN-----LVVKISDFGLSRDIYSSDYYKVR---  662 (774)
T ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCcccccchhhhhceeccc-----eEEEecccccchhhhhhhhhccc---
Confidence               22    8899999999999999999999999999999999999988     89999999999875332111111   


Q ss_pred             ccccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccccc---ccccCCCCCCccHHHHH
Q psy4039         408 IELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTDYE---VNALPQLNTNVPEVMRR  483 (588)
Q Consensus       408 ~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~~~---~~~~~~~~~~~~~~l~~  483 (588)
                      ....-.+.|||||.+....      ++++||||||||+|||+++ |+.||++-.....+.   ....-+-|++||.++.+
T Consensus       663 ~~t~lPIRWMppEsIly~k------FTteSDVWs~GVvLWEIFsyG~QPy~glSn~EVIe~i~~g~lL~~Pe~CP~~vY~  736 (774)
T KOG1026|consen  663 GNTLLPIRWMPPESILYGK------FTTESDVWSFGVVLWEIFSYGKQPYYGLSNQEVIECIRAGQLLSCPENCPTEVYS  736 (774)
T ss_pred             CCceeeeecCCHHHhhcCc------ccchhhhhhhhhhhhhhhccccCcccccchHHHHHHHHcCCcccCCCCCCHHHHH
Confidence            0112356899999998776      6689999999999999997 899998854433332   23334568899999999


Q ss_pred             HHHHhhhhCCCCCCCHHHHHHHHhhhhh
Q psy4039         484 LVAKLLENDPSDRPSAELAATVCQLYLW  511 (588)
Q Consensus       484 Li~~~L~~dP~~Rps~~e~l~~L~~~~~  511 (588)
                      ||..||+.+|.+||++.++-..|+.+.-
T Consensus       737 LM~~CW~~~P~~RPsF~eI~~~L~~~~~  764 (774)
T KOG1026|consen  737 LMLECWNENPKRRPSFKEIHSRLQAWAQ  764 (774)
T ss_pred             HHHHHhhcCcccCCCHHHHHHHHHHHHh
Confidence            9999999999999999999998886543

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=100.00  E-value=3e-39  Score=329.46  Aligned_cols=250  Identities=25%  Similarity=0.327  Sum_probs=196.3

Q ss_pred             CeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCce
Q psy4039         197 DIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNV  274 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNI  274 (588)
                      +|++.+.||+|+||.||+|++.  +..||||.+......               ......+.+|+.+++.+    +||||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~---------------~~~~~~~~~e~~~l~~l----~h~~i   61 (285)
T cd07861           1 DYTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEE---------------EGVPSTAIREISLLKEL----QHPNI   61 (285)
T ss_pred             CceEeeEecccCceEEEEEEECCCCcEEEEEEecccccc---------------CCchHHHHHHHHHHHhc----CCCCE
Confidence            5889999999999999999986  789999998532111               01223456688999887    89999


Q ss_pred             EEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhc--CCCCHHHHHHHHHHHHHH
Q psy4039         275 VVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERC--AQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       275 V~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~--~~l~~~~~~~i~~ql~~g  352 (588)
                      +++++++.+..                            .+++||||+.++|.+++....  ..+++..+..++.|+++|
T Consensus        62 ~~~~~~~~~~~----------------------------~~~~v~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~  113 (285)
T cd07861          62 VCLQDVLMQES----------------------------RLYLIFEFLSMDLKKYLDSLPKGQYMDAELVKSYLYQILQG  113 (285)
T ss_pred             eeeEEEEeeCC----------------------------eEEEEEecCCCCHHHHHhcCCCCCcCCHHHHHHHHHHHHHH
Confidence            99999987632                            489999999989999987532  478999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||+++|+||||||+|||++.+     +.++|+|||++.........     .....|++.|+|||++.+...     
T Consensus       114 L~~lH~~~i~H~dl~p~nil~~~~-----~~~~l~dfg~~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~-----  178 (285)
T cd07861         114 ILFCHSRRVLHRDLKPQNLLIDNK-----GVIKLADFGLARAFGIPVRV-----YTHEVVTLWYRAPEVLLGSPR-----  178 (285)
T ss_pred             HHHHHhCCeeecCCCHHHEEEcCC-----CcEEECcccceeecCCCccc-----ccCCcccccccChHHhcCCCC-----
Confidence            999999999999999999999987     88999999999765432111     113457889999999865431     


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCccccccc------------------------ccc-------ccccCCCCCCccHHH
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNT------------------------DYE-------VNALPQLNTNVPEVM  481 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~------------------------~~~-------~~~~~~~~~~~~~~l  481 (588)
                      .+.++|||||||++|||++|++||.+.....                        .+.       ..........+++++
T Consensus       179 ~~~~~Dv~slG~il~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (285)
T cd07861         179 YSTPVDIWSIGTIFAEMATKKPLFHGDSEIDQLFRIFRILGTPTEDVWPGVTSLPDYKNTFPKWKKGSLRSAVKNLDEDG  258 (285)
T ss_pred             cCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCChhhhhcchhhHHHHhhccccCcchhHHhcCCCCHHH
Confidence            3467999999999999999999997532100                        000       000001123578899


Q ss_pred             HHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccc
Q psy4039         482 RRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWL  517 (588)
Q Consensus       482 ~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~  517 (588)
                      +++|.+||+.||++|||+.++++         |||+
T Consensus       259 ~~li~~~l~~dP~~Rpt~~~ll~---------~~~~  285 (285)
T cd07861         259 LDLLEKMLIYDPAKRISAKKALN---------HPYF  285 (285)
T ss_pred             HHHHHHHhcCChhhCCCHHHHhc---------CCCC
Confidence            99999999999999999999999         9996

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=100.00  E-value=1.2e-39  Score=341.53  Aligned_cols=259  Identities=22%  Similarity=0.341  Sum_probs=198.1

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||.||++.+.  ++.||||++.....           ..   ......+.+|+.++..+    .|+|
T Consensus         1 d~y~i~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~-----------~~---~~~~~~~~~e~~~l~~~----~~~~   62 (331)
T cd05624           1 DDFEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEM-----------LK---RAETACFREERNVLVNG----DCQW   62 (331)
T ss_pred             CCceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHH-----------Hh---hHHHHHHHHHHHHHHhC----CCCC
Confidence            57999999999999999999987  68899999843110           00   01223355678888776    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++++.+..                            ..|+||||+ +|+|.+++......+++..+..++.|++.|
T Consensus        63 i~~l~~~~~~~~----------------------------~~~lv~Ey~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~~  114 (331)
T cd05624          63 ITTLHYAFQDEN----------------------------YLYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYIAEMVLA  114 (331)
T ss_pred             EeeEEEEEEcCC----------------------------EEEEEEeCCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            999999987632                            499999999 689999998755589999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||++||+||||||+|||++.+     +.+||+|||+++........    ......||+.|||||++.+...... .
T Consensus       115 L~~lH~~~iiHrDlkp~Nill~~~-----~~~kl~DfG~a~~~~~~~~~----~~~~~~gt~~y~aPE~~~~~~~~~~-~  184 (331)
T cd05624         115 IHSIHQLHYVHRDIKPDNVLLDMN-----GHIRLADFGSCLKMNQDGTV----QSSVAVGTPDYISPEILQAMEDGMG-K  184 (331)
T ss_pred             HHHHHHCCeeeccCchHHEEEcCC-----CCEEEEeccceeeccCCCce----eeccccCCcccCCHHHHhccccCCC-C
Confidence            999999999999999999999977     78999999999765432211    1113569999999999875321110 1


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCccccccccccc-------cccCCCCCCccHHHHHHHHHhhhhCCCC--CCCHHHHH
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV-------NALPQLNTNVPEVMRRLVAKLLENDPSD--RPSAELAA  503 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~-------~~~~~~~~~~~~~l~~Li~~~L~~dP~~--Rps~~e~l  503 (588)
                      ++.++|||||||++|||++|+.||........+..       ...+.....+++++++++.+||..++.+  |+++++++
T Consensus       185 ~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~li~~ll~~~~~~~~~~~~~~~~  264 (331)
T cd05624         185 YGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHEERFQFPSHITDVSEEAKDLIQRLICSRERRLGQNGIEDFK  264 (331)
T ss_pred             CCCcccEEeeehhhhhhhhCCCCccCCCHHHHHHHHHcCCCcccCCCccccCCHHHHHHHHHHccCchhhcCCCCHHHHh
Confidence            34689999999999999999999976422111110       1122223457899999999999865544  46899988


Q ss_pred             HHHhhhhhcCCccccC
Q psy4039         504 TVCQLYLWAPKHWLYG  519 (588)
Q Consensus       504 ~~L~~~~~~~h~w~~~  519 (588)
                      +         |+|++.
T Consensus       265 ~---------h~~f~~  271 (331)
T cd05624         265 K---------HAFFEG  271 (331)
T ss_pred             c---------CCCcCC
Confidence            8         999874

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=100.00  E-value=2.4e-39  Score=330.18  Aligned_cols=250  Identities=21%  Similarity=0.266  Sum_probs=196.4

Q ss_pred             CeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCce
Q psy4039         197 DIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNV  274 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNI  274 (588)
                      +|++.+.||+|+||.||+|++.  |..||+|.+......               ......+.+|+.+++.+    +||||
T Consensus         1 ~y~~~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~---------------~~~~~~~~~ei~~l~~l----~h~~i   61 (284)
T cd07839           1 KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDD---------------EGVPSSALREICLLKEL----KHKNI   61 (284)
T ss_pred             CceeEEEecccCCeEEEEEEECCCCcEEEEEEeeccccc---------------ccCccchhHHHHHHHhc----CCCCe
Confidence            4788999999999999999996  889999998532111               01223455699999887    99999


Q ss_pred             EEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy4039         275 VVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVT  354 (588)
Q Consensus       275 V~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~  354 (588)
                      +++++++.+..                            ..++++||++++|.+++......+++..+..++.||++||.
T Consensus        62 ~~~~~~~~~~~----------------------------~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~  113 (284)
T cd07839          62 VRLYDVLHSDK----------------------------KLTLVFEYCDQDLKKYFDSCNGDIDPEIVKSFMFQLLKGLA  113 (284)
T ss_pred             eeHHHHhccCC----------------------------ceEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence            99999887632                            48999999999999998875557999999999999999999


Q ss_pred             HHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCC
Q psy4039         355 HLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY  434 (588)
Q Consensus       355 yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~  434 (588)
                      |||+++|+||||||+||+++.+     +.+||+|||+++........     .....+++.|+|||++.+...     ++
T Consensus       114 ~LH~~~i~H~dl~~~nil~~~~-----~~~~l~dfg~~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~-----~~  178 (284)
T cd07839         114 FCHSHNVLHRDLKPQNLLINKN-----GELKLADFGLARAFGIPVRC-----YSAEVVTLWYRPPDVLFGAKL-----YS  178 (284)
T ss_pred             HHHHCCEecCCCCHHHEEEcCC-----CcEEECccchhhccCCCCCC-----cCCCccccCCcChHHHhCCcc-----cC
Confidence            9999999999999999999987     78999999999765432111     113457899999999866431     35


Q ss_pred             CcCchhhHHHHHHHHhcCCCCCccccccc-c---------------c-------ccccc---------CCCCCCccHHHH
Q psy4039         435 SKSDAWTAGTVAYEIFGHDNPFYQSARNT-D---------------Y-------EVNAL---------PQLNTNVPEVMR  482 (588)
Q Consensus       435 ~ksDVwS~Gvil~ElltG~~Pf~~~~~~~-~---------------~-------~~~~~---------~~~~~~~~~~l~  482 (588)
                      .++|||||||++|||++|..||....... .               +       .....         ......++++++
T Consensus       179 ~~~DiwslG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (284)
T cd07839         179 TSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEESWPGVSKLPDYKPYPMYPATTSLVNVVPKLNSTGR  258 (284)
T ss_pred             cHHHHHHHHHHHHHHHhcCCCCcCCCCHHHHHHHHHHHhCCCChHHhHHhhhcccccccCCCCCcchhhhhcccCCHHHH
Confidence            68999999999999999998864321100 0               0       00000         111235788999


Q ss_pred             HHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccc
Q psy4039         483 RLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWL  517 (588)
Q Consensus       483 ~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~  517 (588)
                      ++|.+||+.||.+|||++++++         |||+
T Consensus       259 ~li~~~l~~~P~~R~t~~~il~---------h~~f  284 (284)
T cd07839         259 DLLQNLLVCNPVQRISAEEALQ---------HPYF  284 (284)
T ss_pred             HHHHHHhcCChhhcCCHHHHhc---------CCCC
Confidence            9999999999999999999999         9996

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=100.00  E-value=1.6e-39  Score=337.83  Aligned_cols=261  Identities=19%  Similarity=0.218  Sum_probs=202.6

Q ss_pred             cccCCeEEeeeecccCceeEEEEEEC--C----eeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhc
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFR--G----VEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVE  266 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~--g----~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~  266 (588)
                      +...+|++.+.||+|+||.||+|++.  +    ..||||++.....   .             ...+.+.+|+.+++.+ 
T Consensus         4 ~~~~~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~---~-------------~~~~~~~~e~~~l~~l-   66 (316)
T cd05108           4 LKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATS---P-------------KANKEILDEAYVMASV-   66 (316)
T ss_pred             cchhhceeeeeeecCCCceEEEEEEecCCCccceeEEEEeccccCC---H-------------HHHHHHHHHHHHHHhC-
Confidence            34478999999999999999999874  2    3489999842110   0             0123456688888887 


Q ss_pred             CCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHH
Q psy4039         267 NLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLL  345 (588)
Q Consensus       267 ~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i  345 (588)
                         +||||++++++|...                             ..++++||+ +|+|.+++......+++..+..+
T Consensus        67 ---~h~niv~~~g~~~~~-----------------------------~~~~v~e~~~~g~l~~~l~~~~~~~~~~~~~~~  114 (316)
T cd05108          67 ---DNPHVCRLLGICLTS-----------------------------TVQLITQLMPFGCLLDYVREHKDNIGSQYLLNW  114 (316)
T ss_pred             ---CCCCCCeEEEEEcCC-----------------------------CceeeeecCCCCCHHHHHHhccccCCHHHHHHH
Confidence               999999999988652                             267889998 68999999886657899999999


Q ss_pred             HHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcC
Q psy4039         346 FTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALAT  425 (588)
Q Consensus       346 ~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~  425 (588)
                      +.||+.||+|||+++|+||||||+|||++.+     +.+||+|||+++.........   ......++..|+|||++.+.
T Consensus       115 ~~qi~~~L~~LH~~~iiH~dlkp~Nill~~~-----~~~kl~DfG~a~~~~~~~~~~---~~~~~~~~~~y~apE~~~~~  186 (316)
T cd05108         115 CVQIAKGMNYLEERRLVHRDLAARNVLVKTP-----QHVKITDFGLAKLLGADEKEY---HAEGGKVPIKWMALESILHR  186 (316)
T ss_pred             HHHHHHHHHHHHhcCeeccccchhheEecCC-----CcEEEccccccccccCCCcce---eccCCccceeecChHHhccC
Confidence            9999999999999999999999999999887     789999999998765422111   01123356789999999765


Q ss_pred             CCCccCCCCCcCchhhHHHHHHHHhc-CCCCCccccccc---cccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHH
Q psy4039         426 PGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNT---DYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAEL  501 (588)
Q Consensus       426 ~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~---~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e  501 (588)
                      .      ++.++|||||||++|||++ |..||.+.....   ........+.+..++.++.+++.+||..||++||++.+
T Consensus       187 ~------~~~~~Di~slGv~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~~  260 (316)
T cd05108         187 I------YTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPICTIDVYMIMVKCWMIDADSRPKFRE  260 (316)
T ss_pred             C------CCchhhhHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHH
Confidence            4      4578999999999999997 999997632211   11122233445678899999999999999999999999


Q ss_pred             HHHHHhhhhhcCCcc
Q psy4039         502 AATVCQLYLWAPKHW  516 (588)
Q Consensus       502 ~l~~L~~~~~~~h~w  516 (588)
                      ++..+....-.+..|
T Consensus       261 l~~~l~~~~~~~~~~  275 (316)
T cd05108         261 LIIEFSKMARDPQRY  275 (316)
T ss_pred             HHHHHHHHHcCCchh
Confidence            999887665444443

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>KOG0574|consensus

Probab=100.00  E-value=1.4e-41  Score=331.26  Aligned_cols=252  Identities=21%  Similarity=0.272  Sum_probs=208.0

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      +-|++.++||+|+||.||+|.++  |+.||||.+..   ..+.                +.+..||.||+++    +.|+
T Consensus        33 EVFDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV---~sDL----------------QEIIKEISIMQQC----~S~y   89 (502)
T KOG0574|consen   33 EVFDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPV---DTDL----------------QEIIKEISIMQQC----KSKY   89 (502)
T ss_pred             HHHHHHHHhcCCcchHHHHHHHhccCcEEEEEecCc---cchH----------------HHHHHHHHHHHHc----CCch
Confidence            34778899999999999999998  89999999842   2222                3345599999998    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCC-CcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYN-TDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~-gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      +|++||.|..                            +..+|+|||||+ ||+.+.++.++.+|++.++..++++.++|
T Consensus        90 VVKYYGSYFK----------------------------~sDLWIVMEYCGAGSiSDI~R~R~K~L~E~EIs~iL~~TLKG  141 (502)
T KOG0574|consen   90 VVKYYGSYFK----------------------------HSDLWIVMEYCGAGSISDIMRARRKPLSEQEISAVLRDTLKG  141 (502)
T ss_pred             hhhhhhhhcc----------------------------CCceEeehhhcCCCcHHHHHHHhcCCccHHHHHHHHHHHHhH
Confidence            9999987654                            335999999995 99999999888899999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |+|||...-||||||+.|||++.+     +.+||+|||.|-.+.+...     ...+..|||.|||||++..-.      
T Consensus       142 L~YLH~~~KIHRDIKAGNILLNT~-----G~AKLADFGVAGQLTDTMA-----KRNTVIGTPFWMAPEVI~EIG------  205 (502)
T KOG0574|consen  142 LQYLHDLKKIHRDIKAGNILLNTD-----GIAKLADFGVAGQLTDTMA-----KRNTVIGTPFWMAPEVIEEIG------  205 (502)
T ss_pred             HHHHHHHHHHHhhcccccEEEccc-----chhhhhhccccchhhhhHH-----hhCccccCcccccHHHHHHhc------
Confidence            999999999999999999999988     8999999999977544221     123578999999999998655      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcccccc-cccccc--ccCC--CCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHh
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARN-TDYEVN--ALPQ--LNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~-~~~~~~--~~~~--~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~  507 (588)
                      |..++||||+|++..||.-|++||.+-... ..+...  ..|.  -|+.++.++.|+|++||.++|++|-|+-++++   
T Consensus       206 Y~~~ADIWSLGITaIEMAEG~PPYsDIHPMRAIFMIPT~PPPTF~KPE~WS~~F~DFi~~CLiK~PE~R~TA~~L~~---  282 (502)
T KOG0574|consen  206 YDTKADIWSLGITAIEMAEGRPPYSDIHPMRAIFMIPTKPPPTFKKPEEWSSEFNDFIRSCLIKKPEERKTALRLCE---  282 (502)
T ss_pred             cchhhhHhhhcchhhhhhcCCCCcccccccceeEeccCCCCCCCCChHhhhhHHHHHHHHHhcCCHHHHHHHHHHhh---
Confidence            567899999999999999999999874222 222211  1122  24567889999999999999999999999877   


Q ss_pred             hhhhcCCccccCCCCC
Q psy4039         508 LYLWAPKHWLYGATPS  523 (588)
Q Consensus       508 ~~~~~~h~w~~~~~~~  523 (588)
                            |||++...+.
T Consensus       283 ------H~FiknA~g~  292 (502)
T KOG0574|consen  283 ------HTFIKNAPGC  292 (502)
T ss_pred             ------hhhhcCCCcc
Confidence                  9999966554

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=100.00  E-value=7.7e-40  Score=341.89  Aligned_cols=246  Identities=24%  Similarity=0.333  Sum_probs=189.0

Q ss_pred             eeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHH-HHhhhcCCCCCCceEEEe
Q psy4039         202 KFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDM-LMNSVENLPPHPNVVVMH  278 (588)
Q Consensus       202 ~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~-il~~l~~l~~HpNIV~l~  278 (588)
                      +.||+|+||.||+|.+.  |+.||||++........              .....+..|.. +++.+    +||||++++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~--------------~~~~~~~~e~~~~l~~~----~hp~iv~~~   62 (325)
T cd05604           1 KVIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNR--------------KEQKHIMAERNVLLKNV----KHPFLVGLH   62 (325)
T ss_pred             CceeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhh--------------hHHHHHHHHHHHHHHhC----CCCCCccEE
Confidence            46999999999999986  78999999853211000              01122333444 34444    999999999


Q ss_pred             eeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q psy4039         279 FAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLN  357 (588)
Q Consensus       279 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yLH  357 (588)
                      +++.+..                            .+|+||||+ +|+|..++.... .+++.++..++.||+.||.|||
T Consensus        63 ~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~al~~lH  113 (325)
T cd05604          63 YSFQTTE----------------------------KLYFVLDFVNGGELFFHLQRER-SFPEPRARFYAAEIASALGYLH  113 (325)
T ss_pred             EEEecCC----------------------------EEEEEEcCCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH
Confidence            9887632                            489999999 679998887654 7999999999999999999999


Q ss_pred             hCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCCcC
Q psy4039         358 MHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS  437 (588)
Q Consensus       358 ~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ks  437 (588)
                      ++||+||||||+|||++.+     +.+||+|||+++.......     .....+||+.|||||++.+..      ++.++
T Consensus       114 ~~givH~Dlkp~NIll~~~-----~~~kL~DfG~~~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~------~~~~~  177 (325)
T cd05604         114 SINIVYRDLKPENILLDSQ-----GHVVLTDFGLCKEGIAQSD-----TTTTFCGTPEYLAPEVIRKQP------YDNTV  177 (325)
T ss_pred             HCCeeecCCCHHHeEECCC-----CCEEEeecCCcccCCCCCC-----CcccccCChhhCCHHHHcCCC------CCCcC
Confidence            9999999999999999988     7999999999875322111     112467999999999997654      45789


Q ss_pred             chhhHHHHHHHHhcCCCCCccccccccccc--cccCCCCCCccHHHHHHHHHhhhhCCCCCCCHH----HHHHHHhhhhh
Q psy4039         438 DAWTAGTVAYEIFGHDNPFYQSARNTDYEV--NALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE----LAATVCQLYLW  511 (588)
Q Consensus       438 DVwS~Gvil~ElltG~~Pf~~~~~~~~~~~--~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~----e~l~~L~~~~~  511 (588)
                      |||||||++|||++|..||........+..  ......+..++..+.+++.+||+.||.+||++.    ++++       
T Consensus       178 DvwslG~il~el~~G~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~p~~R~~~~~~~~~i~~-------  250 (325)
T cd05604         178 DWWCLGAVLYEMLYGLPPFYCRDVAEMYDNILHKPLVLRPGASLTAWSILEELLEKDRQRRLGAKEDFLEIQE-------  250 (325)
T ss_pred             ccccccceehhhhcCCCCCCCCCHHHHHHHHHcCCccCCCCCCHHHHHHHHHHhccCHHhcCCCCCCHHHHhc-------
Confidence            999999999999999999976432221111  112234456889999999999999999999874    6665       


Q ss_pred             cCCccccC
Q psy4039         512 APKHWLYG  519 (588)
Q Consensus       512 ~~h~w~~~  519 (588)
                        |||+..
T Consensus       251 --h~~f~~  256 (325)
T cd05604         251 --HPFFES  256 (325)
T ss_pred             --CCCcCC
Confidence              999974

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=100.00  E-value=3.1e-39  Score=330.99  Aligned_cols=251  Identities=24%  Similarity=0.321  Sum_probs=199.1

Q ss_pred             CeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCce
Q psy4039         197 DIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNV  274 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNI  274 (588)
                      .|+..+.||+|+||.||+|.+.  ++.||||.+........              .....+.+|+.+++.+    +|+||
T Consensus         1 ~f~~~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~--------------~~~~~~~~E~~il~~l----~~~~i   62 (285)
T cd05630           1 TFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKR--------------KGESMALNEKQILEKV----NSRFV   62 (285)
T ss_pred             CceeeEEeecCCCeEEEEEEEcCCCceEEEEEEehhhccch--------------HHHHHHHHHHHHHHhC----CCCCe
Confidence            3678889999999999999997  78999999853221110              0112345688899887    99999


Q ss_pred             EEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc-CCCCHHHHHHHHHHHHHH
Q psy4039         275 VVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC-AQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       275 V~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~-~~l~~~~~~~i~~ql~~g  352 (588)
                      +++++.+.+..                            .+++||||+ +++|.+++.... ..+++..+..++.|++.|
T Consensus        63 ~~~~~~~~~~~----------------------------~~~lv~e~~~g~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~  114 (285)
T cd05630          63 VSLAYAYETKD----------------------------ALCLVLTLMNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCG  114 (285)
T ss_pred             eeeeEEEecCC----------------------------EEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHH
Confidence            99998887632                            489999999 689999986542 369999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||+.+|+||||||+||+++.+     +.++|+|||++.....+...      ....||+.|+|||++.+..      
T Consensus       115 l~~lH~~~iiH~dikp~Nil~~~~-----~~~~l~Dfg~~~~~~~~~~~------~~~~g~~~y~aPE~~~~~~------  177 (285)
T cd05630         115 LEDLHQERIVYRDLKPENILLDDH-----GHIRISDLGLAVHVPEGQTI------KGRVGTVGYMAPEVVKNER------  177 (285)
T ss_pred             HHHHHhCCEEeCCCCHHHEEECCC-----CCEEEeeccceeecCCCccc------cCCCCCccccChHHHcCCC------
Confidence            999999999999999999999987     78999999998765432211      1346899999999997654      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcccccccc------ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCC-----HHH
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD------YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS-----AEL  501 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~------~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps-----~~e  501 (588)
                      ++.++||||+||++|||++|+.||........      .........+..+++++++|+.+||+.||++|||     +++
T Consensus       178 ~~~~~DiwslG~~l~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~s~~~~~~~~  257 (285)
T cd05630         178 YTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEVQEEYSEKFSPDARSLCKMLLCKDPKERLGCQGGGARE  257 (285)
T ss_pred             CCCccccHHHHHHHHHHHhCCCCCCCCCccchHHHHHhhhhhhhhhcCccCCHHHHHHHHHHhhcCHHHccCCCCCchHH
Confidence            45789999999999999999999976322110      0111122345678899999999999999999999     899


Q ss_pred             HHHHHhhhhhcCCccccC
Q psy4039         502 AATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       502 ~l~~L~~~~~~~h~w~~~  519 (588)
                      +++         |||++.
T Consensus       258 ~~~---------h~~~~~  266 (285)
T cd05630         258 VKE---------HPLFKQ  266 (285)
T ss_pred             HHc---------Chhhhc
Confidence            988         999864

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=100.00  E-value=1.4e-39  Score=331.83  Aligned_cols=253  Identities=23%  Similarity=0.297  Sum_probs=200.2

Q ss_pred             cccCCeEEeeeecccCceeEEEEEECC-------eeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhh
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFRG-------VEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSV  265 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~g-------~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l  265 (588)
                      +.+++|++.+.||+|+||.||+|.+.+       ..||+|.+.....    .            .....+.+|+.++..+
T Consensus         2 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~----~------------~~~~~~~~ei~~l~~l   65 (283)
T cd05048           2 IPLSAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAE----P------------KVQQEFRQEAELMSDL   65 (283)
T ss_pred             CChHHcchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCC----H------------HHHHHHHHHHHHHHhc
Confidence            456789999999999999999998762       5699999843210    0            0123466789999887


Q ss_pred             cCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc----------
Q psy4039         266 ENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC----------  334 (588)
Q Consensus       266 ~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~----------  334 (588)
                          +||||+++++++.+..                            ..+++|||+ +++|.+++....          
T Consensus        66 ----~h~~i~~~~~~~~~~~----------------------------~~~~~~e~~~~~~L~~~l~~~~~~~~~~~~~~  113 (283)
T cd05048          66 ----QHPNIVCLLGVCTKEQ----------------------------PTCMLFEYLAHGDLHEFLVRNSPHSDVGAESG  113 (283)
T ss_pred             ----CCcccceEEEEEcCCC----------------------------ceEEEEecCCCCcHHHHHHhcCCCcccccccc
Confidence                8999999999987632                            389999999 689999997641          


Q ss_pred             -----CCCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCcccccccccc
Q psy4039         335 -----AQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIE  409 (588)
Q Consensus       335 -----~~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~  409 (588)
                           ..+++.++..++.|++.||.|||+++|+||||||+||+++++     +.++|+|||+++.........   ....
T Consensus       114 ~~~~~~~l~~~~~~~~~~~l~~al~~lH~~~i~H~dlkp~Nil~~~~-----~~~~L~dfg~~~~~~~~~~~~---~~~~  185 (283)
T cd05048         114 DETVKSSLDCSDFLHIAIQIAAGMEYLSSHHFVHRDLAARNCLVGEG-----LTVKISDFGLSRDIYSADYYR---VQSK  185 (283)
T ss_pred             cccccCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccccceEEEcCC-----CcEEECCCcceeecccccccc---ccCC
Confidence                 358899999999999999999999999999999999999987     789999999997653321111   1113


Q ss_pred             ccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHH
Q psy4039         410 LGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLV  485 (588)
Q Consensus       410 ~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li  485 (588)
                      ..+|+.|+|||.+.+..      .+.++|||||||++|||++ |..||.+......   ......+..+..+|+++.+|+
T Consensus       186 ~~~~~~y~aPE~~~~~~------~~~~sDv~slG~il~el~~~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~  259 (283)
T cd05048         186 SLLPVRWMPPEAILYGK------FTTESDIWSFGVVLWEIFSYGLQPYYGFSNQEVIEMIRSRQLLPCPEDCPARVYALM  259 (283)
T ss_pred             CcccccccCHHHhccCc------CchhhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCcCCCcccCCHHHHHHH
Confidence            45788999999986554      4578999999999999998 9999976332211   112233445678999999999


Q ss_pred             HHhhhhCCCCCCCHHHHHHHHh
Q psy4039         486 AKLLENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       486 ~~~L~~dP~~Rps~~e~l~~L~  507 (588)
                      .+||+.||.+||++.++++.|+
T Consensus       260 ~~c~~~~p~~Rp~~~~i~~~l~  281 (283)
T cd05048         260 IECWNEIPARRPRFKDIHTRLR  281 (283)
T ss_pred             HHHccCChhhCcCHHHHHHHHh
Confidence            9999999999999999998775

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=100.00  E-value=1.2e-39  Score=340.36  Aligned_cols=245  Identities=26%  Similarity=0.365  Sum_probs=187.3

Q ss_pred             eeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHH-HHhhhcCCCCCCceEEEe
Q psy4039         202 KFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDM-LMNSVENLPPHPNVVVMH  278 (588)
Q Consensus       202 ~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~-il~~l~~l~~HpNIV~l~  278 (588)
                      +.||+|+||+||+|.+.  ++.||+|++........              .....+..|.. +++.+    +||||++++
T Consensus         1 ~~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~--------------~~~~~~~~e~~~~l~~~----~h~~Iv~~~   62 (325)
T cd05602           1 KVIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKK--------------KEEKHIMSERNVLLKNV----KHPFLVGLH   62 (325)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHHhh--------------hHHHHHHHHHHHHHHhC----CCCCCCcee
Confidence            46999999999999987  67899999853111000              01112223333 34444    899999999


Q ss_pred             eeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q psy4039         279 FAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLN  357 (588)
Q Consensus       279 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yLH  357 (588)
                      +++.+..                            .+|+||||+ +|+|.+++.... .+++..+..++.||++||.|||
T Consensus        63 ~~~~~~~----------------------------~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~qi~~~L~~lH  113 (325)
T cd05602          63 FSFQTAD----------------------------KLYFVLDYINGGELFYHLQRER-CFLEPRARFYAAEIASALGYLH  113 (325)
T ss_pred             EEEEcCC----------------------------eEEEEEeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH
Confidence            9887632                            489999999 579999997654 7899999999999999999999


Q ss_pred             hCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCCcC
Q psy4039         358 MHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS  437 (588)
Q Consensus       358 ~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ks  437 (588)
                      ++||+||||||+|||++.+     +.+||+|||+++.......     .....+||+.|+|||++.+..      ++.++
T Consensus       114 ~~giiHrDlkp~Nili~~~-----~~~kl~DfG~a~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~------~~~~~  177 (325)
T cd05602         114 SLNIVYRDLKPENILLDSQ-----GHIVLTDFGLCKENIEHNG-----TTSTFCGTPEYLAPEVLHKQP------YDRTV  177 (325)
T ss_pred             HCCeEecCCCHHHeEECCC-----CCEEEccCCCCcccccCCC-----CcccccCCccccCHHHHcCCC------CCCcc
Confidence            9999999999999999987     7899999999975322111     112467999999999997654      45789


Q ss_pred             chhhHHHHHHHHhcCCCCCccccccccccc--cccCCCCCCccHHHHHHHHHhhhhCCCCCCCHH----HHHHHHhhhhh
Q psy4039         438 DAWTAGTVAYEIFGHDNPFYQSARNTDYEV--NALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE----LAATVCQLYLW  511 (588)
Q Consensus       438 DVwS~Gvil~ElltG~~Pf~~~~~~~~~~~--~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~----e~l~~L~~~~~  511 (588)
                      ||||+||++|||++|..||.+......+..  ......+..+++++.+++.+||+.||.+||++.    ++++       
T Consensus       178 DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~i~~-------  250 (325)
T cd05602         178 DWWCLGAVLYEMLYGLPPFYSRNTAEMYDNILNKPLQLKPNITNSARHLLEGLLQKDRTKRLGAKDDFMEIKN-------  250 (325)
T ss_pred             ccccccHHHHHHhcCCCCCCCCCHHHHHHHHHhCCcCCCCCCCHHHHHHHHHHcccCHHHCCCCCCCHHHHhc-------
Confidence            999999999999999999976432222111  112234567899999999999999999999876    4444       


Q ss_pred             cCCcccc
Q psy4039         512 APKHWLY  518 (588)
Q Consensus       512 ~~h~w~~  518 (588)
                        |+|+.
T Consensus       251 --~~~~~  255 (325)
T cd05602         251 --HIFFS  255 (325)
T ss_pred             --CcccC
Confidence              88875

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.5e-40  Score=344.22  Aligned_cols=248  Identities=23%  Similarity=0.355  Sum_probs=188.6

Q ss_pred             ecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEEeeee
Q psy4039         204 IAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAF  281 (588)
Q Consensus       204 IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l~~~~  281 (588)
                      ||+|+||+||+|.+.  ++.||||++......           .+.   .......|..++..+ .+..||||+++++++
T Consensus         1 lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~-----------~~~---~~~~~~~e~~~l~~~-~~~~~p~i~~~~~~~   65 (330)
T cd05586           1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIV-----------AKK---EVAHTIGERNILVRT-LLDESPFIVGLKFSF   65 (330)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEEeHHHHh-----------hhh---HHHHHHHHHHHHHHh-ccCCCCcCcceEEEE
Confidence            799999999999987  789999998531110           000   011123355555543 112799999999988


Q ss_pred             eccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC
Q psy4039         282 TDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHR  360 (588)
Q Consensus       282 ~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yLH~~~  360 (588)
                      .+..                            .+|+||||+ +|+|..++.... .+++..+..++.||++||+|||++|
T Consensus        66 ~~~~----------------------------~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~qil~al~~LH~~~  116 (330)
T cd05586          66 QTDS----------------------------DLYLVTDYMSGGELFWHLQKEG-RFSEDRAKFYIAELVLALEHLHKYD  116 (330)
T ss_pred             ecCC----------------------------eEEEEEcCCCCChHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            7632                            489999999 689999987654 7999999999999999999999999


Q ss_pred             ceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCCcCchh
Q psy4039         361 TAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAW  440 (588)
Q Consensus       361 IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVw  440 (588)
                      |+||||||+|||++.+     +.+||+|||+++.......     .....+||+.|+|||++.+...     ++.++|||
T Consensus       117 ivHrDlkp~Nili~~~-----~~~kl~Dfg~a~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~-----~~~~~Dvw  181 (330)
T cd05586         117 IVYRDLKPENILLDAT-----GHIALCDFGLSKANLTDNK-----TTNTFCGTTEYLAPEVLLDEKG-----YTKHVDFW  181 (330)
T ss_pred             eEeccCCHHHeEECCC-----CCEEEecCCcCcCCCCCCC-----CccCccCCccccCHHHHcCCCC-----CCCcccee
Confidence            9999999999999987     7899999999875432211     1124679999999999865432     35789999


Q ss_pred             hHHHHHHHHhcCCCCCcccccccccccc--ccCCCC-CCccHHHHHHHHHhhhhCCCCCC----CHHHHHHHHhhhhhcC
Q psy4039         441 TAGTVAYEIFGHDNPFYQSARNTDYEVN--ALPQLN-TNVPEVMRRLVAKLLENDPSDRP----SAELAATVCQLYLWAP  513 (588)
Q Consensus       441 S~Gvil~ElltG~~Pf~~~~~~~~~~~~--~~~~~~-~~~~~~l~~Li~~~L~~dP~~Rp----s~~e~l~~L~~~~~~~  513 (588)
                      ||||++|||++|..||........+...  ....++ ..+++++++++.+||+.||.+||    +++++++         
T Consensus       182 slGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~~L~~~P~~R~~~~~~~~~ll~---------  252 (330)
T cd05586         182 SLGVLVFEMCCGWSPFYAEDTQQMYRNIAFGKVRFPKNVLSDEGRQFVKGLLNRNPQHRLGAHRDAVELKE---------  252 (330)
T ss_pred             ccccEEEEeccCCCCCCCCCHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHcCCCHHHCCCCCCCHHHHhc---------
Confidence            9999999999999999774322211111  111222 34789999999999999999998    6788777         


Q ss_pred             CccccC
Q psy4039         514 KHWLYG  519 (588)
Q Consensus       514 h~w~~~  519 (588)
                      |||+..
T Consensus       253 h~~~~~  258 (330)
T cd05586         253 HPFFAD  258 (330)
T ss_pred             CccccC
Confidence            999974

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=100.00  E-value=4e-39  Score=324.53  Aligned_cols=252  Identities=19%  Similarity=0.252  Sum_probs=201.1

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEEC-CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCC
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLP  269 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~  269 (588)
                      |++..++|++.++||+|+||.||+|.+. +..||+|.+.....                  ..+.+.+|+.+++.+    
T Consensus         1 ~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~v~iK~~~~~~~------------------~~~~~~~e~~~l~~l----   58 (261)
T cd05072           1 WEIPRESIKLVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPGTM------------------SVQAFLEEANLMKTL----   58 (261)
T ss_pred             CcCchHHeEEeeecCCcCCceEEEEEecCCceEEEEEccCCch------------------hHHHHHHHHHHHHhC----
Confidence            5677799999999999999999999876 57899998742110                  123466789999887    


Q ss_pred             CCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh-cCCCCHHHHHHHHH
Q psy4039         270 PHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER-CAQLSMHERVLLFT  347 (588)
Q Consensus       270 ~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~-~~~l~~~~~~~i~~  347 (588)
                      +||||+++++++.+..                            ..+++|||+ +++|.+++... ...+++..+..++.
T Consensus        59 ~h~~i~~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~  110 (261)
T cd05072          59 QHDKLVRLYAVVTKEE----------------------------PIYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSA  110 (261)
T ss_pred             CCCCeeeEEEEEcCCC----------------------------CcEEEEecCCCCcHHHHHHHhcCCCCCHHHHHHHHH
Confidence            8999999998876532                            389999999 68999999764 34689999999999


Q ss_pred             HHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCC
Q psy4039         348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG  427 (588)
Q Consensus       348 ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~  427 (588)
                      |+++||+|||+.+++||||||+||+++.+     +.++|+|||+++.........    .....++..|+|||++.+.. 
T Consensus       111 ~l~~~l~~LH~~~i~H~dl~p~nili~~~-----~~~~l~dfg~~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~-  180 (261)
T cd05072         111 QIAEGMAYIERKNYIHRDLRAANVLVSES-----LMCKIADFGLARVIEDNEYTA----REGAKFPIKWTAPEAINFGS-  180 (261)
T ss_pred             HHHHHHHHHHHCCeeccccchhhEEecCC-----CcEEECCCccceecCCCceec----cCCCccceecCCHHHhccCC-
Confidence            99999999999999999999999999987     789999999998765432211    11234677899999986654 


Q ss_pred             CccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHH
Q psy4039         428 LFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAA  503 (588)
Q Consensus       428 ~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l  503 (588)
                           .+.++|||||||++|||++ |..||........   .......+....+|.++.+++.+||+.||++||+++++.
T Consensus       181 -----~~~~~Di~slG~~l~~l~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~  255 (261)
T cd05072         181 -----FTIKSDVWSFGILLYEIVTYGKIPYPGMSNSDVMSALQRGYRMPRMENCPDELYDIMKTCWKEKAEERPTFDYLQ  255 (261)
T ss_pred             -----CChhhhhhhhHHHHHHHHccCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHccCCcccCcCHHHHH
Confidence                 4468999999999999998 9999965322111   111122234456889999999999999999999999999


Q ss_pred             HHHh
Q psy4039         504 TVCQ  507 (588)
Q Consensus       504 ~~L~  507 (588)
                      ++|+
T Consensus       256 ~~l~  259 (261)
T cd05072         256 SVLD  259 (261)
T ss_pred             HHHh
Confidence            8776

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=100.00  E-value=4.1e-39  Score=323.71  Aligned_cols=248  Identities=21%  Similarity=0.250  Sum_probs=197.1

Q ss_pred             ccCCeEEeeeecccCceeEEEEEEC-CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         194 KVDDIQIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       194 ~~~~~~~~~~IG~G~fG~Vy~a~~~-g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      +.++|++.+.||+|+||.||++.++ +..+|+|.+.....                  ....+.+|+.+++.+    +||
T Consensus         2 ~~~~~~~~~~lg~G~~~~vy~~~~~~~~~~a~K~~~~~~~------------------~~~~~~~e~~~l~~l----~h~   59 (256)
T cd05114           2 NPSELTFMKELGSGQFGVVHLGKWRAQIKVAIKAINEGAM------------------SEEDFIEEAKVMMKL----SHP   59 (256)
T ss_pred             CHHHcEEeeEecCCcCceEEEEEeccCceEEEEecccCCc------------------cHHHHHHHHHHHHHC----CCC
Confidence            4478999999999999999999987 45899998743211                  123466799999987    899


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLE  351 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~  351 (588)
                      ||+++++++.+..                            ..+++|||+ +|+|.+++......+++..+..++.|++.
T Consensus        60 ~i~~~~~~~~~~~----------------------------~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~  111 (256)
T cd05114          60 KLVQLYGVCTQQK----------------------------PLYIVTEFMENGCLLNYLRQRQGKLSKDMLLSMCQDVCE  111 (256)
T ss_pred             CceeEEEEEccCC----------------------------CEEEEEEcCCCCcHHHHHHhCccCCCHHHHHHHHHHHHH
Confidence            9999999987632                            389999999 68999999865447899999999999999


Q ss_pred             HHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccC
Q psy4039         352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF  431 (588)
Q Consensus       352 gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~  431 (588)
                      ||.|||++||+||||||+||+++.+     +.+||+|||+++.........    .....++..|+|||++.+..     
T Consensus       112 ~l~~lH~~~i~H~dl~p~ni~i~~~-----~~~kl~d~g~~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~-----  177 (256)
T cd05114         112 GMEYLERNSFIHRDLAARNCLVSST-----GVVKVSDFGMTRYVLDDEYTS----SSGAKFPVKWSPPEVFNFSK-----  177 (256)
T ss_pred             HHHHHHHCCccccccCcceEEEcCC-----CeEEECCCCCccccCCCceec----cCCCCCchhhCChhhcccCc-----
Confidence            9999999999999999999999987     789999999997653321111    11233567899999987554     


Q ss_pred             CCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHH
Q psy4039         432 VNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVC  506 (588)
Q Consensus       432 ~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L  506 (588)
                       .+.++||||||+++|||++ |+.||........   ......+..+...+.++.+++.+||+.||++||+++++++.|
T Consensus       178 -~~~~~Di~s~G~~l~el~~~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~c~~~~p~~Rps~~~l~~~l  255 (256)
T cd05114         178 -YSSKSDVWSFGVLMWEVFTEGKMPFEKKSNYEVVEMISRGFRLYRPKLASMTVYEVMYSCWHEKPEGRPTFAELLRAI  255 (256)
T ss_pred             -cchhhhhHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHccCCcccCcCHHHHHHhh
Confidence             4468999999999999999 8999976432211   111222334556788999999999999999999999998754

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>KOG4279|consensus

Probab=100.00  E-value=1.5e-40  Score=352.43  Aligned_cols=245  Identities=25%  Similarity=0.339  Sum_probs=204.7

Q ss_pred             eecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEEeee
Q psy4039         203 FIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFA  280 (588)
Q Consensus       203 ~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l~~~  280 (588)
                      +||+|+||+||.|++.  ...+|||-|...+                 ....+-+.+||.+.+.+    +|.|||+++|.
T Consensus       582 VLGKGTYG~VYA~RD~~tqvrIaIKEIpekd-----------------sr~~QPLhEEIaLH~~L----rHkNIVrYLGs  640 (1226)
T KOG4279|consen  582 VLGKGTYGTVYAARDMDTQVRIAIKEIPEKD-----------------SREVQPLHEEIALHSTL----RHKNIVRYLGS  640 (1226)
T ss_pred             EeecCceeEEEeeccccceeEEEeeeccccc-----------------chhhccHHHHHHHHHHH----hhHhHHHHhhc
Confidence            8999999999999998  5678999884221                 11334556799999988    99999999988


Q ss_pred             eeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHHHH
Q psy4039         281 FTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQL--SMHERVLLFTQLLEGVTHLN  357 (588)
Q Consensus       281 ~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l--~~~~~~~i~~ql~~gL~yLH  357 (588)
                      +.+                            ++.+-|.||-. +|||.++|+...+++  ++...-.+.+||++||.|||
T Consensus       641 ~se----------------------------nGf~kIFMEqVPGGSLSsLLrskWGPlKDNEstm~fYtkQILeGLkYLH  692 (1226)
T KOG4279|consen  641 VSE----------------------------NGFFKIFMEQVPGGSLSSLLRSKWGPLKDNESTMNFYTKQILEGLKYLH  692 (1226)
T ss_pred             cCC----------------------------CCeEEEEeecCCCCcHHHHHHhccCCCccchhHHHHHHHHHHHHhhhhh
Confidence            643                            34588999998 789999999986677  88899999999999999999


Q ss_pred             hCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCCcC
Q psy4039         358 MHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS  437 (588)
Q Consensus       358 ~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ks  437 (588)
                      ++.|||||||-+|||++.-.    +.+||+|||.++.+..     .+..+.++.||..|||||++..++..    |+.++
T Consensus       693 en~IVHRDIKGDNVLvNTyS----GvlKISDFGTsKRLAg-----inP~TETFTGTLQYMAPEvIDqG~RG----YG~aA  759 (1226)
T KOG4279|consen  693 ENKIVHRDIKGDNVLVNTYS----GVLKISDFGTSKRLAG-----INPCTETFTGTLQYMAPEVIDQGPRG----YGKAA  759 (1226)
T ss_pred             hcceeeccccCCcEEEeecc----ceEEecccccchhhcc-----CCccccccccchhhhChHhhccCCcC----CCchh
Confidence            99999999999999998653    8999999999987543     22333478899999999999987755    56789


Q ss_pred             chhhHHHHHHHHhcCCCCCccc--ccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhc
Q psy4039         438 DAWTAGTVAYEIFGHDNPFYQS--ARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWA  512 (588)
Q Consensus       438 DVwS~Gvil~ElltG~~Pf~~~--~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~  512 (588)
                      |||||||++.||.||++||..-  .....   -.....|++|..++.+++.+|.+|+.+||.+||++.+++.        
T Consensus       760 DIWS~GCT~vEMATGrPPF~ElgspqAAMFkVGmyKvHP~iPeelsaeak~FilrcFepd~~~R~sA~~LL~--------  831 (1226)
T KOG4279|consen  760 DIWSFGCTMVEMATGRPPFVELGSPQAAMFKVGMYKVHPPIPEELSAEAKNFILRCFEPDPCDRPSAKDLLQ--------  831 (1226)
T ss_pred             hhhhccceeEeeccCCCCeeecCChhHhhhhhcceecCCCCcHHHHHHHHHHHHHHcCCCcccCccHHHhcc--------
Confidence            9999999999999999999762  11111   1234677899999999999999999999999999999888        


Q ss_pred             CCcccc
Q psy4039         513 PKHWLY  518 (588)
Q Consensus       513 ~h~w~~  518 (588)
                       .||++
T Consensus       832 -DpFlq  836 (1226)
T KOG4279|consen  832 -DPFLQ  836 (1226)
T ss_pred             -Ccccc
Confidence             88888

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=100.00  E-value=5.8e-39  Score=324.19  Aligned_cols=253  Identities=22%  Similarity=0.253  Sum_probs=202.1

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCC
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENL  268 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l  268 (588)
                      |++...+|.+.+.||+|+||.||+|.+.  +..||+|.+.....                  ....+.+|+.+++.+   
T Consensus         1 ~~~~~~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~~~------------------~~~~~~~e~~~l~~l---   59 (263)
T cd05052           1 WEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM------------------EVEEFLKEAAVMKEI---   59 (263)
T ss_pred             CCCchHHeEEeeecCCcccceEEEEEEecCCceEEEEEecCCch------------------HHHHHHHHHHHHHhC---
Confidence            4566788999999999999999999986  78999999842110                  123456788999887   


Q ss_pred             CCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh-cCCCCHHHHHHHH
Q psy4039         269 PPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER-CAQLSMHERVLLF  346 (588)
Q Consensus       269 ~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~-~~~l~~~~~~~i~  346 (588)
                       +||||+++++++....                            .++++|||+ +++|.+++... ...+++..+..++
T Consensus        60 -~h~~i~~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~  110 (263)
T cd05052          60 -KHPNLVQLLGVCTREP----------------------------PFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMA  110 (263)
T ss_pred             -CCCChhheEEEEcCCC----------------------------CcEEEEEeCCCCcHHHHHHhCCCCCCCHHHHHHHH
Confidence             8999999999887632                            389999999 68999999764 3368999999999


Q ss_pred             HHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCC
Q psy4039         347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP  426 (588)
Q Consensus       347 ~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~  426 (588)
                      .|+++||+|||++||+||||||+|||++++     +.+||+|||+++.........    .....+++.|+|||++.+..
T Consensus       111 ~ql~~~l~~lH~~~i~H~dlkp~nil~~~~-----~~~kl~df~~~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~  181 (263)
T cd05052         111 TQISSAMEYLEKKNFIHRDLAARNCLVGEN-----HLVKVADFGLSRLMTGDTYTA----HAGAKFPIKWTAPESLAYNK  181 (263)
T ss_pred             HHHHHHHHHHHhCCEeecccCcceEEEcCC-----CcEEeCCCccccccccceeec----cCCCCCccccCCHHHhccCC
Confidence            999999999999999999999999999877     789999999998765422111    11223467899999987654


Q ss_pred             CCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHH
Q psy4039         427 GLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA  502 (588)
Q Consensus       427 ~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~  502 (588)
                            .+.++|||||||++|||++ |..||.+......   ......+..+..+|.++.+++.+||..||++||++.++
T Consensus       182 ------~~~~~Dv~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~l  255 (263)
T cd05052         182 ------FSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKGYRMERPEGCPPKVYELMRACWQWNPSDRPSFAEI  255 (263)
T ss_pred             ------CCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHccCCcccCCCHHHH
Confidence                  4578999999999999998 9999876322211   11122345567889999999999999999999999999


Q ss_pred             HHHHhh
Q psy4039         503 ATVCQL  508 (588)
Q Consensus       503 l~~L~~  508 (588)
                      ++.|+.
T Consensus       256 ~~~l~~  261 (263)
T cd05052         256 HQAFET  261 (263)
T ss_pred             HHHHHh
Confidence            987764

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=100.00  E-value=3.8e-39  Score=346.20  Aligned_cols=262  Identities=22%  Similarity=0.275  Sum_probs=204.8

Q ss_pred             CCCccccccCCeEEeeeecccCceeEEEEEEC-------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHH
Q psy4039         187 LPDVDDVKVDDIQIGKFIAKGTNAVVYEATFR-------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNED  259 (588)
Q Consensus       187 ~~~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei  259 (588)
                      ....++++.++|.+++.||+|+||.||+|++.       +..||||++......                ...+.+.+|+
T Consensus        28 ~~~~~~~~~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~----------------~~~~~~~~Ei   91 (400)
T cd05105          28 YDSRWEFPRDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARS----------------SEKQALMSEL   91 (400)
T ss_pred             CCCceeccccceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCCh----------------HHHHHHHHHH
Confidence            34567788899999999999999999999874       246999998532110                0123567799


Q ss_pred             HHHhhhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc----
Q psy4039         260 MLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC----  334 (588)
Q Consensus       260 ~il~~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~----  334 (588)
                      .+++.+   ..|||||+++++|.+..                            .+|+||||| +|+|.++|..+.    
T Consensus        92 ~~l~~l---~~HpnIv~l~~~~~~~~----------------------------~~~lv~Ey~~~g~L~~~l~~~~~~~~  140 (400)
T cd05105          92 KIMTHL---GPHLNIVNLLGACTKSG----------------------------PIYIITEYCFYGDLVNYLHKNRDNFL  140 (400)
T ss_pred             HHHHhc---CCCCCeeeEEEEEccCC----------------------------ceEEEEEecCCCcHHHHHHHhhhhhh
Confidence            999887   35999999999987632                            389999999 689999987531    


Q ss_pred             --------------------------------------------------------------------------------
Q psy4039         335 --------------------------------------------------------------------------------  334 (588)
Q Consensus       335 --------------------------------------------------------------------------------  334 (588)
                                                                                                      
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (400)
T cd05105         141 SRHPEKPKKDLDIFGINPADESTRSYVILSFENKGDYMDMKQADTTQYVPMLEIKEASKYSDIQRSNYDRPASYKGSNDS  220 (400)
T ss_pred             ccccccccccccccCCCcccccccchhhhhhcccccccccccccccccchhhhhhhhhhhhhcccCcccccccccCcchh
Confidence                                                                                            


Q ss_pred             -----------CCCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCcccc
Q psy4039         335 -----------AQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQY  403 (588)
Q Consensus       335 -----------~~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~  403 (588)
                                 ..+++.++..++.|+++||.|||+++|+||||||+|||++.+     +.+||+|||+++........  
T Consensus       221 ~l~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivH~dikp~Nill~~~-----~~~kL~DfGla~~~~~~~~~--  293 (400)
T cd05105         221 EVKNLLSDDGSEGLTTLDLLSFTYQVARGMEFLASKNCVHRDLAARNVLLAQG-----KIVKICDFGLARDIMHDSNY--  293 (400)
T ss_pred             hHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChHhEEEeCC-----CEEEEEeCCcceeccccccc--
Confidence                       147888899999999999999999999999999999999987     78999999999865432211  


Q ss_pred             ccccccccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc----ccccccCCCCCCcc
Q psy4039         404 SSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD----YEVNALPQLNTNVP  478 (588)
Q Consensus       404 ~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~----~~~~~~~~~~~~~~  478 (588)
                       .......+++.|+|||++.+..      ++.++|||||||++|||++ |..||........    ......+..+..+|
T Consensus       294 -~~~~~~~~~~~y~aPE~~~~~~------~~~~~DiwSlGvil~ellt~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (400)
T cd05105         294 -VSKGSTFLPVKWMAPESIFDNL------YTTLSDVWSYGILLWEIFSLGGTPYPGMIVDSTFYNKIKSGYRMAKPDHAT  366 (400)
T ss_pred             -cccCCcCCCcceEChhhhcCCC------CCchhhHHHHHHHHHHHHHCCCCCCcccchhHHHHHHHhcCCCCCCCccCC
Confidence             1111345778999999987654      4578999999999999997 9999876422111    11122334556789


Q ss_pred             HHHHHHHHHhhhhCCCCCCCHHHHHHHHhhh
Q psy4039         479 EVMRRLVAKLLENDPSDRPSAELAATVCQLY  509 (588)
Q Consensus       479 ~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~  509 (588)
                      .++.+++.+||+.||++||++.++.+.|+..
T Consensus       367 ~~l~~li~~cl~~dP~~RPt~~~l~~~l~~l  397 (400)
T cd05105         367 QEVYDIMVKCWNSEPEKRPSFLHLSDIVESL  397 (400)
T ss_pred             HHHHHHHHHHCccCHhHCcCHHHHHHHHHHH
Confidence            9999999999999999999999999987743

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=100.00  E-value=1.8e-39  Score=338.40  Aligned_cols=245  Identities=24%  Similarity=0.326  Sum_probs=187.6

Q ss_pred             eeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHH-HHhhhcCCCCCCceEEEe
Q psy4039         202 KFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDM-LMNSVENLPPHPNVVVMH  278 (588)
Q Consensus       202 ~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~-il~~l~~l~~HpNIV~l~  278 (588)
                      +.||+|+||.||+|.+.  +..||||++......           ..   .....+..|+. +++.+    +||||++++
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~-----------~~---~~~~~~~~e~~~~l~~~----~h~~iv~~~   62 (321)
T cd05603           1 KVIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTIL-----------KK---KEQNHIMAERNVLLKNL----KHPFLVGLH   62 (321)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHHH-----------Hh---hHHHHHHHHHHHHHHhC----CCCCcccee
Confidence            46999999999999986  789999998531110           00   01122333443 45554    999999999


Q ss_pred             eeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q psy4039         279 FAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLN  357 (588)
Q Consensus       279 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yLH  357 (588)
                      +++.+..                            ..|+||||+ +|+|..++.... .+++..+..++.||++||.|||
T Consensus        63 ~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~L~~lH  113 (321)
T cd05603          63 YSFQTAE----------------------------KLYFVLDYVNGGELFFHLQRER-CFLEPRARFYAAEVASAIGYLH  113 (321)
T ss_pred             eEEEcCC----------------------------EEEEEEcCCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH
Confidence            9887632                            489999999 579988887643 7899999999999999999999


Q ss_pred             hCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCCcC
Q psy4039         358 MHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS  437 (588)
Q Consensus       358 ~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ks  437 (588)
                      ++||+||||||+|||++.+     +.+||+|||+++.......     .....+||+.|+|||++.+..      ++.++
T Consensus       114 ~~~ivH~Dlkp~NIll~~~-----~~~kl~Dfg~~~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~------~~~~~  177 (321)
T cd05603         114 SLNIIYRDLKPENILLDSQ-----GHVVLTDFGLCKEGVEPEE-----TTSTFCGTPEYLAPEVLRKEP------YDRTV  177 (321)
T ss_pred             HCCeEeccCCHHHeEECCC-----CCEEEccCCCCccCCCCCC-----ccccccCCcccCCHHHhcCCC------CCCcC
Confidence            9999999999999999987     7999999999875322111     112467999999999987654      45789


Q ss_pred             chhhHHHHHHHHhcCCCCCccccccccccc--cccCCCCCCccHHHHHHHHHhhhhCCCCCCCHH----HHHHHHhhhhh
Q psy4039         438 DAWTAGTVAYEIFGHDNPFYQSARNTDYEV--NALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE----LAATVCQLYLW  511 (588)
Q Consensus       438 DVwS~Gvil~ElltG~~Pf~~~~~~~~~~~--~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~----e~l~~L~~~~~  511 (588)
                      |||||||++|||++|..||........+..  .....++...+.++.+++.+||+.||.+||++.    ++++       
T Consensus       178 DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~~~-------  250 (321)
T cd05603         178 DWWCLGAVLYEMLYGLPPFYSRDVSQMYDNILHKPLQLPGGKTVAACDLLVGLLHKDQRRRLGAKADFLEIKN-------  250 (321)
T ss_pred             cccccchhhhhhhcCCCCCCCCCHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHccCCHhhcCCCCCCHHHHhC-------
Confidence            999999999999999999976432211111  122345567889999999999999999999764    5444       


Q ss_pred             cCCcccc
Q psy4039         512 APKHWLY  518 (588)
Q Consensus       512 ~~h~w~~  518 (588)
                        |+|+.
T Consensus       251 --~~~~~  255 (321)
T cd05603         251 --HVFFS  255 (321)
T ss_pred             --CCCcC
Confidence              88875

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=2.4e-39  Score=330.85  Aligned_cols=270  Identities=21%  Similarity=0.252  Sum_probs=211.8

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||.||++.+.  +..||+|.+....   +.             .....+.+|+.+++.+    +|||
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~---~~-------------~~~~~~~~e~~~l~~~----~~~~   60 (286)
T cd06622           1 DEIEVLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLEL---DE-------------SKFNQIIMELDILHKA----VSPY   60 (286)
T ss_pred             ChhhhhhhhcccCCeEEEEEEEcCCCcEEEEEEeeccc---CH-------------HHHHHHHHHHHHHHhc----CCCc
Confidence            46889999999999999999997  8899999984211   10             0123456688888887    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh--cCCCCHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER--CAQLSMHERVLLFTQLL  350 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~--~~~l~~~~~~~i~~ql~  350 (588)
                      |+++++++...                            ...++||||+ +++|..++...  ...+++..+..++.|++
T Consensus        61 i~~~~~~~~~~----------------------------~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~  112 (286)
T cd06622          61 IVDFYGAFFIE----------------------------GAVYMCMEYMDAGSLDKLYAGGVATEGIPEDVLRRITYAVV  112 (286)
T ss_pred             HHhhhhheecC----------------------------CeEEEEEeecCCCCHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence            99999987752                            2489999999 57999988764  23789999999999999


Q ss_pred             HHHHHHHh-CCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCc
Q psy4039         351 EGVTHLNM-HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF  429 (588)
Q Consensus       351 ~gL~yLH~-~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~  429 (588)
                      .||.|||+ .+|+||||||+||+++.+     +.++|+|||++........       ....|++.|+|||++.+.....
T Consensus       113 ~~l~~LH~~~~i~H~dl~p~nil~~~~-----~~~~l~dfg~~~~~~~~~~-------~~~~~~~~y~aPE~~~~~~~~~  180 (286)
T cd06622         113 KGLKFLKEEHNIIHRDVKPTNVLVNGN-----GQVKLCDFGVSGNLVASLA-------KTNIGCQSYMAPERIKSGGPNQ  180 (286)
T ss_pred             HHHHHHHhcCCEeeCCCCHHHEEECCC-----CCEEEeecCCcccccCCcc-------ccCCCccCccCcchhcCCCCCc
Confidence            99999997 599999999999999987     7899999999876533211       1345888999999986543222


Q ss_pred             cCCCCCcCchhhHHHHHHHHhcCCCCCcccccccc------ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHH
Q psy4039         430 SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD------YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAA  503 (588)
Q Consensus       430 ~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~------~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l  503 (588)
                      ...++.++|||||||++|||++|..||........      ......+.++..+++++.++|.+||+.+|++||++++++
T Consensus       181 ~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~  260 (286)
T cd06622         181 NPTYTVQSDVWSLGLSILEMALGRYPYPPETYANIFAQLSAIVDGDPPTLPSGYSDDAQDFVAKCLNKIPNRRPTYAQLL  260 (286)
T ss_pred             cCCCCcccchHhHHHHHHHHHhCCCCCCCcchhhHHHHHHHHhhcCCCCCCcccCHHHHHHHHHHcccCcccCCCHHHHh
Confidence            22245789999999999999999999965322111      111233456667899999999999999999999999999


Q ss_pred             HHHhhhhhcCCccccCCCCChhHHHHHHHhh
Q psy4039         504 TVCQLYLWAPKHWLYGATPSHNEIMQWLLTL  534 (588)
Q Consensus       504 ~~L~~~~~~~h~w~~~~~~~~~~~~~~l~~~  534 (588)
                      +         |||+........++..|+...
T Consensus       261 ~---------~~~~~~~~~~~~~~~~~~~~~  282 (286)
T cd06622         261 E---------HPWLVKYKNADVDMAEWVTGA  282 (286)
T ss_pred             c---------ChhhhhccCCccchHHHHHHH
Confidence            9         999986666677777776543

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=100.00  E-value=4.1e-39  Score=328.58  Aligned_cols=248  Identities=21%  Similarity=0.308  Sum_probs=189.5

Q ss_pred             ecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEEeeee
Q psy4039         204 IAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAF  281 (588)
Q Consensus       204 IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l~~~~  281 (588)
                      ||+|+||.||++..+  |+.||+|.+........              ........|+.+++.+    +||||+++++++
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~--------------~~~~~~~~E~~il~~l----~hp~i~~~~~~~   62 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKK--------------SGEKMALLEKEILEKV----NSPFIVNLAYAF   62 (277)
T ss_pred             CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhcc--------------hhhHHHHHHHHHHHhc----CCCcEEEEEEEE
Confidence            799999999999986  88999999843111100              0122334588899887    999999999988


Q ss_pred             eccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhC
Q psy4039         282 TDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC-AQLSMHERVLLFTQLLEGVTHLNMH  359 (588)
Q Consensus       282 ~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~-~~l~~~~~~~i~~ql~~gL~yLH~~  359 (588)
                      .+..                            ..++||||+ +++|.+++.... ..+++..+..++.|++.||.|||+.
T Consensus        63 ~~~~----------------------------~~~lv~e~~~g~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~  114 (277)
T cd05607          63 ESKT----------------------------HLCLVMSLMNGGDLKYHIYNVGERGLEMERVIHYSAQITCGILHLHSM  114 (277)
T ss_pred             ecCC----------------------------eEEEEEecCCCCCHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            7632                            489999999 689998886542 3689999999999999999999999


Q ss_pred             CceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCCcCch
Q psy4039         360 RTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDA  439 (588)
Q Consensus       360 ~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDV  439 (588)
                      ||+||||||+|||++.+     +.++|+|||++.....+...      ....||+.|+|||++.+..      ++.++||
T Consensus       115 ~ivH~dikp~Nili~~~-----~~~~l~Dfg~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~------~~~~~Dv  177 (277)
T cd05607         115 DIVYRDMKPENVLLDDQ-----GNCRLSDLGLAVELKDGKTI------TQRAGTNGYMAPEILKEEP------YSYPVDW  177 (277)
T ss_pred             CEEEccCChHhEEEcCC-----CCEEEeeceeeeecCCCcee------eccCCCCCccCHHHHccCC------CCCchhH
Confidence            99999999999999987     78999999999775442211      1346899999999997654      4578999


Q ss_pred             hhHHHHHHHHhcCCCCCcccccccc---c-c---ccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhc
Q psy4039         440 WTAGTVAYEIFGHDNPFYQSARNTD---Y-E---VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWA  512 (588)
Q Consensus       440 wS~Gvil~ElltG~~Pf~~~~~~~~---~-~---~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~  512 (588)
                      ||+||++|||++|..||........   . .   ....+.....+++++++|+.+||+.||++||++.++++.+..    
T Consensus       178 wslGv~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~P~~R~~~~~~~~~~~~----  253 (277)
T cd05607         178 FAMGCSIYEMVAGRTPFKDHKEKVAKEELKRRTLEDEVKFEHQNFTEESKDICRLFLAKKPEDRLGSREKNDDPRK----  253 (277)
T ss_pred             HHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHhhccccccccccCCHHHHHHHHHHhccCHhhCCCCccchhhhhc----
Confidence            9999999999999999975321110   0 0   011111224678999999999999999999999543321111    


Q ss_pred             CCccccC
Q psy4039         513 PKHWLYG  519 (588)
Q Consensus       513 ~h~w~~~  519 (588)
                       |+|++.
T Consensus       254 -h~~f~~  259 (277)
T cd05607         254 -HEFFKT  259 (277)
T ss_pred             -ChhhcC
Confidence             999964

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=9.3e-39  Score=321.68  Aligned_cols=255  Identities=23%  Similarity=0.285  Sum_probs=202.9

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++++.||+|++|.||.|.+.  +++||+|.+..........            .....+.+|+.+++.+    +|||
T Consensus         2 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~------------~~~~~~~~e~~~l~~l----~~~~   65 (263)
T cd06625           2 TNWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETK------------KEVNALECEIQLLKNL----QHER   65 (263)
T ss_pred             CcccccceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhH------------HHHHHHHHHHHHHHhC----CCCC
Confidence            67899999999999999999875  7899999986432211110            0123456788888887    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++++.+..                            .++++|||+ +++|.+++.... .+++..+..++.|++.|
T Consensus        66 i~~~~~~~~~~~----------------------------~~~~v~e~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~  116 (263)
T cd06625          66 IVQYYGCLRDDE----------------------------TLSIFMEYMPGGSVKDQLKAYG-ALTETVTRKYTRQILEG  116 (263)
T ss_pred             eeeeEEEEccCC----------------------------eEEEEEEECCCCcHHHHHHHhC-CCCHHHHHHHHHHHHHH
Confidence            999999987632                            599999999 579999998764 78999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||+.||+||||||+||+++++     +.++|+|||+++........  ........|+..|+|||++.+..      
T Consensus       117 l~~lH~~~i~H~dl~p~nilv~~~-----~~~~l~dfg~~~~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~------  183 (263)
T cd06625         117 VEYLHSNMIVHRDIKGANILRDSA-----GNVKLGDFGASKRLQTICSS--GTGMKSVTGTPYWMSPEVISGEG------  183 (263)
T ss_pred             HHHHHhCCeecCCCCHHHEEEcCC-----CCEEEeecccceeccccccc--cccccCCCcCccccCcceeccCC------
Confidence            999999999999999999999987     78999999999765432111  00001356888999999997654      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcccccccc----ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhh
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD----YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQL  508 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~----~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~  508 (588)
                      .+.++||||+||++|||++|+.||........    ......+.++..++.++.+++.+||..+|.+|||+.++++    
T Consensus       184 ~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~----  259 (263)
T cd06625         184 YGRKADVWSVGCTVVEMLTEKPPWAEFEAMAAIFKIATQPTNPQLPSHVSPDARNFLRRTFVENAKKRPSAEELLR----  259 (263)
T ss_pred             CCchhhhHHHHHHHHHHHhCCCCccccchHHHHHHHhccCCCCCCCccCCHHHHHHHHHHhhcCcccCCCHHHHhh----
Confidence            45789999999999999999999976322111    1112234566788999999999999999999999999999    


Q ss_pred             hhhcCCccc
Q psy4039         509 YLWAPKHWL  517 (588)
Q Consensus       509 ~~~~~h~w~  517 (588)
                           |+|+
T Consensus       260 -----~~~~  263 (263)
T cd06625         260 -----HFFV  263 (263)
T ss_pred             -----CCCC
Confidence                 9996

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=100.00  E-value=2.5e-39  Score=340.17  Aligned_cols=260  Identities=22%  Similarity=0.270  Sum_probs=201.4

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEEC-------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHh
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATFR-------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMN  263 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~  263 (588)
                      |++.-++|++.+.||+|+||.||+|.+.       ++.||+|+++....   ..             ..+.+..|+.++.
T Consensus         2 ~~~~~~~~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~---~~-------------~~~~~~~E~~~~~   65 (337)
T cd05054           2 WEFPRDRLKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGAT---AS-------------EYKALMTELKILI   65 (337)
T ss_pred             cccCHHHhhhhcccccCcCceEEeccccccccccccceeeeeeccCCCC---HH-------------HHHHHHHHHHHHH
Confidence            5666789999999999999999999754       46899999843110   00             1123456888887


Q ss_pred             hhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc--------
Q psy4039         264 SVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC--------  334 (588)
Q Consensus       264 ~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~--------  334 (588)
                      ++   .+||||++++++|....                           ..++++|||+ +++|.+++....        
T Consensus        66 ~l---~~h~niv~~~~~~~~~~---------------------------~~~~~v~ey~~~~~L~~~i~~~~~~~~~~~~  115 (337)
T cd05054          66 HI---GHHLNVVNLLGACTKPG---------------------------GPLMVIVEYCKFGNLSNYLRSKRECFSPYRN  115 (337)
T ss_pred             hh---ccCcchhheeeeEecCC---------------------------CCEEEEEecCCCCCHHHHHHhcccccccccc
Confidence            76   57999999999886531                           1388999999 689999986421        


Q ss_pred             ----------------------------------------------------CCCCHHHHHHHHHHHHHHHHHHHhCCce
Q psy4039         335 ----------------------------------------------------AQLSMHERVLLFTQLLEGVTHLNMHRTA  362 (588)
Q Consensus       335 ----------------------------------------------------~~l~~~~~~~i~~ql~~gL~yLH~~~Iv  362 (588)
                                                                          ..+++..+..++.||+.||.|||++||+
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~~iv  195 (337)
T cd05054         116 KSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVEEDEEGDELYKEPLTLEDLISYSFQVARGMEFLASRKCI  195 (337)
T ss_pred             ccccccccccccccccccccCCccccccccccccCcchhhcccchhhhHHhhcCCCHHHHHHHHHHHHHHHHHHHhCCee
Confidence                                                                2689999999999999999999999999


Q ss_pred             eccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCCcCchhhH
Q psy4039         363 HRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTA  442 (588)
Q Consensus       363 HrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~  442 (588)
                      ||||||+|||++.+     +.++|+|||+++.........   ......++..|+|||++.+..      ++.++|||||
T Consensus       196 HrDikp~Nill~~~-----~~vkL~DfG~a~~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~------~~~~~Di~Sl  261 (337)
T cd05054         196 HRDLAARNILLSEN-----NVVKICDFGLARDIYKDPDYV---RKGDARLPLKWMAPESIFDKV------YTTQSDVWSF  261 (337)
T ss_pred             cCCCCcceEEEeCC-----CcEEEeccccchhcccCcchh---hccCCCCCccccCcHHhcCCC------CCccccHHHH
Confidence            99999999999987     789999999998754322111   111345678899999987654      5678999999


Q ss_pred             HHHHHHHhc-CCCCCccccccc----cccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhh
Q psy4039         443 GTVAYEIFG-HDNPFYQSARNT----DYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYL  510 (588)
Q Consensus       443 Gvil~Ellt-G~~Pf~~~~~~~----~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~  510 (588)
                      ||++|||++ |..||.+.....    .......+..+..+++++.+++.+||+.+|++||+++++++.|...+
T Consensus       262 Gv~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~RPs~~ell~~l~~~~  334 (337)
T cd05054         262 GVLLWEIFSLGASPYPGVQIDEEFCRRLKEGTRMRAPEYATPEIYSIMLDCWHNNPEDRPTFSELVEILGDLL  334 (337)
T ss_pred             HHHHHHHHHcCCCCCCCCCccHHHHHHHhccCCCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence            999999997 999996532111    11122233445677899999999999999999999999999887554

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=100.00  E-value=8.2e-39  Score=320.47  Aligned_cols=249  Identities=24%  Similarity=0.331  Sum_probs=202.3

Q ss_pred             CeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCce
Q psy4039         197 DIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNV  274 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNI  274 (588)
                      +|++.+.||+|+||.||+|++.  +..||+|.+......               ......+.+|+.+++.+    +||||
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~---------------~~~~~~~~~e~~~l~~l----~h~~i   61 (256)
T cd08529           1 DFEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMN---------------RREREEAIDEARVLAKL----DSSYI   61 (256)
T ss_pred             CceEeEEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCC---------------HHHHHHHHHHHHHHHhc----CCCCe
Confidence            5788999999999999999986  789999998532211               11234456788888887    99999


Q ss_pred             EEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh-cCCCCHHHHHHHHHHHHHH
Q psy4039         275 VVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER-CAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       275 V~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~-~~~l~~~~~~~i~~ql~~g  352 (588)
                      +++++++.+..                            ..+++|||+ +++|.+++... ...+++..++.++.|++.|
T Consensus        62 ~~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~~l~~a  113 (256)
T cd08529          62 IRYYESFLDKG----------------------------KLNIVMEYAENGDLHKLLKMQRGRPLPEDQVWRFFIQILLG  113 (256)
T ss_pred             ehheeeeccCC----------------------------EEEEEEEeCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence            99999887632                            489999999 67999999875 4579999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||+.||+||||||+||+++.+     +.++|+|||+++........     .....|++.|+|||++.+..      
T Consensus       114 l~~lH~~~i~h~dl~~~nili~~~-----~~~~l~df~~~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~------  177 (256)
T cd08529         114 LAHLHSKKILHRDIKSLNLFLDAY-----DNVKIGDLGVAKLLSDNTNF-----ANTIVGTPYYLSPELCEDKP------  177 (256)
T ss_pred             HHHHHHCCcccCCCCcceEEEeCC-----CCEEEcccccceeccCccch-----hhccccCccccCHHHhcCCC------
Confidence            999999999999999999999987     78999999999876542211     11356889999999997654      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhh
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLY  509 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~  509 (588)
                      .+.++|||||||++|||++|+.||........   ......+.++..++.++.+++.+||+.+|++||++.+++.     
T Consensus       178 ~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~ll~-----  252 (256)
T cd08529         178 YNEKSDVWALGVVLYECCTGKHPFDANNQGALILKIIRGVFPPVSQMYSQQLAQLIDQCLTKDYRQRPDTFQLLR-----  252 (256)
T ss_pred             CCCccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCccccCHHHHHHHHHHccCCcccCcCHHHHhh-----
Confidence            45789999999999999999999976432111   1123344555678899999999999999999999999998     


Q ss_pred             hhcCCccc
Q psy4039         510 LWAPKHWL  517 (588)
Q Consensus       510 ~~~~h~w~  517 (588)
                          |||+
T Consensus       253 ----~~~~  256 (256)
T cd08529         253 ----NPSL  256 (256)
T ss_pred             ----CCCC
Confidence                9996

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>KOG0589|consensus

Probab=100.00  E-value=6.5e-40  Score=343.05  Aligned_cols=248  Identities=24%  Similarity=0.331  Sum_probs=209.1

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      .++|..++.||+|+||.++.++++  +..|++|.|.-......               .++....|+.+++++    .||
T Consensus         3 m~~Ye~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~---------------~r~~A~~E~~lis~~----~hP   63 (426)
T KOG0589|consen    3 MDNYEVLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTEP---------------ERRSAIQEMDLLSKL----LHP   63 (426)
T ss_pred             cchhhhhhhcCccccchhhhhhhccCCceEEEEEEeccccCch---------------hhHHHHHHHHHHHhc----cCC
Confidence            478999999999999999988887  77999999964322211               222456799999987    999


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc-CCCCHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC-AQLSMHERVLLFTQLL  350 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~-~~l~~~~~~~i~~ql~  350 (588)
                      |||.+.+.|.+.                           +..++|||+|| +|+|.+.|.... ..++++.+..++.|++
T Consensus        64 ~iv~y~ds~~~~---------------------------~~~l~Ivm~Y~eGg~l~~~i~~~k~~~f~E~~i~~~~~Q~~  116 (426)
T KOG0589|consen   64 NIVEYKDSFEED---------------------------GQLLCIVMEYCEGGDLAQLIKEQKGVLFPEERILKWFVQIL  116 (426)
T ss_pred             CeeeeccchhcC---------------------------CceEEEEEeecCCCCHHHHHHHHhhccccHHHHHHHHHHHH
Confidence            999999988763                           22499999999 689999998764 6799999999999999


Q ss_pred             HHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCcc
Q psy4039         351 EGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFS  430 (588)
Q Consensus       351 ~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~  430 (588)
                      .|+.|||+++|+|||||+.|||++.+     ..+||+|||+|+........     ..+.+|||.||.||++.+.+    
T Consensus       117 ~av~ylH~~~iLHRDlK~~Nifltk~-----~~VkLgDfGlaK~l~~~~~~-----a~tvvGTp~YmcPEil~d~p----  182 (426)
T KOG0589|consen  117 LAVNYLHENRVLHRDLKCANIFLTKD-----KKVKLGDFGLAKILNPEDSL-----ASTVVGTPYYMCPEILSDIP----  182 (426)
T ss_pred             HHHHHHHhhhhhcccchhhhhhcccc-----CceeecchhhhhhcCCchhh-----hheecCCCcccCHHHhCCCC----
Confidence            99999999999999999999999998     77899999999998764322     22678999999999999887    


Q ss_pred             CCCCCcCchhhHHHHHHHHhcCCCCCccccccccc---cccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHH
Q psy4039         431 FVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY---EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAAT  504 (588)
Q Consensus       431 ~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~---~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~  504 (588)
                        |+.|+|||||||++|||++-+++|.........   ......+++..++.+++.+|..||..+|+.||++.+++.
T Consensus       183 --Yn~KSDiWsLGC~~yEm~~lk~aF~a~~m~~Li~ki~~~~~~Plp~~ys~el~~lv~~~l~~~P~~RPsa~~LL~  257 (426)
T KOG0589|consen  183 --YNEKSDIWSLGCCLYEMCTLKPAFKASNMSELILKINRGLYSPLPSMYSSELRSLVKSMLRKNPEHRPSALELLR  257 (426)
T ss_pred             --CCccCcchhhcchHHHHHhcccccCccchHHHHHHHhhccCCCCCccccHHHHHHHHHHhhcCCccCCCHHHHhh
Confidence              668999999999999999999999875332221   223356788899999999999999999999999999988

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=100.00  E-value=5.8e-39  Score=325.06  Aligned_cols=259  Identities=21%  Similarity=0.281  Sum_probs=199.7

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      +.|++.+.||+|+||.||+|.+.  ++.||+|.+.....                  ....+..|+.++..+   .+|||
T Consensus         6 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~------------------~~~~~~~e~~~l~~~---~~h~~   64 (272)
T cd06637           6 GIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGD------------------EEEEIKQEINMLKKY---SHHRN   64 (272)
T ss_pred             hhhhHHHheeecCCeEEEEEEEcCCCcEEEEEEEEcCCc------------------cHHHHHHHHHHHHHh---cCCCC
Confidence            56888899999999999999986  78999999853210                  123345688888776   47999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh-cCCCCHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER-CAQLSMHERVLLFTQLLE  351 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~-~~~l~~~~~~~i~~ql~~  351 (588)
                      |++++++|.+..+                      .+.....|++|||+ +++|.+++... ...+++..+..++.|++.
T Consensus        65 i~~~~~~~~~~~~----------------------~~~~~~~~iv~e~~~~~~L~~~l~~~~~~~l~~~~~~~~~~qi~~  122 (272)
T cd06637          65 IATYYGAFIKKNP----------------------PGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILR  122 (272)
T ss_pred             eeeEeeEEeecCC----------------------CCCCcEEEEEEEcCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence            9999999876421                      01123589999999 57999999864 346899999999999999


Q ss_pred             HHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccC
Q psy4039         352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF  431 (588)
Q Consensus       352 gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~  431 (588)
                      ||.|||+++|+||||||+||+++.+     +.++|+|||+++.......     ......|++.|+|||++.+.... ..
T Consensus       123 ~l~~LH~~~ivh~dl~~~nili~~~-----~~~~l~Dfg~~~~~~~~~~-----~~~~~~g~~~y~aPE~~~~~~~~-~~  191 (272)
T cd06637         123 GLSHLHQHKVIHRDIKGQNVLLTEN-----AEVKLVDFGVSAQLDRTVG-----RRNTFIGTPYWMAPEVIACDENP-DA  191 (272)
T ss_pred             HHHHHHHCCCccCCCCHHHEEECCC-----CCEEEccCCCceecccccc-----cCCcccccccccCHhHhccccCc-CC
Confidence            9999999999999999999999987     7899999999976543211     11246699999999998643211 11


Q ss_pred             CCCCcCchhhHHHHHHHHhcCCCCCcccccccccc----ccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHh
Q psy4039         432 VNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE----VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       432 ~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~----~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~  507 (588)
                      .++.++|||||||++|||++|..||..........    .......+..++.++.+|+.+||..||.+|||+++++.   
T Consensus       192 ~~~~~~Dv~slGv~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~---  268 (272)
T cd06637         192 TYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRALFLIPRNPAPRLKSKKWSKKFQSFIESCLVKNHSQRPTTEQLMK---  268 (272)
T ss_pred             CCCchhhHHHHHHHHHHHHhCCCCccccCHHHHHHHHhcCCCCCCCCCCcCHHHHHHHHHHcCCChhhCCCHHHHhh---
Confidence            24568999999999999999999996532111111    11111223467889999999999999999999999999   


Q ss_pred             hhhhcCCccc
Q psy4039         508 LYLWAPKHWL  517 (588)
Q Consensus       508 ~~~~~~h~w~  517 (588)
                            |||+
T Consensus       269 ------~~~~  272 (272)
T cd06637         269 ------HPFI  272 (272)
T ss_pred             ------CCCC
Confidence                  9996

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=100.00  E-value=5.5e-39  Score=327.85  Aligned_cols=253  Identities=22%  Similarity=0.277  Sum_probs=198.4

Q ss_pred             cccCCeEEeeeecccCceeEEEEEEC------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhc
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFR------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVE  266 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~  266 (588)
                      +.+++|++.+.||+|+||+||+|.+.      +..||+|.+.....   .             .....+.+|+.+++.+ 
T Consensus         2 ~~~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~---~-------------~~~~~~~~E~~~l~~l-   64 (283)
T cd05090           2 LPLSAVRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINN---P-------------QQWGEFQQEASLMAEL-   64 (283)
T ss_pred             CChhhceeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCCC---H-------------HHHHHHHHHHHHHhhC-
Confidence            45688999999999999999999862      57899999853111   0             0123456788999887 


Q ss_pred             CCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc-----------
Q psy4039         267 NLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC-----------  334 (588)
Q Consensus       267 ~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~-----------  334 (588)
                         +||||+++++++....                            ..+++|||+ +++|.+++..+.           
T Consensus        65 ---~h~niv~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~  113 (283)
T cd05090          65 ---HHPNIVCLLGVVTQEQ----------------------------PVCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDE  113 (283)
T ss_pred             ---CCCCeeeEEEEEecCC----------------------------ceEEEEEcCCCCcHHHHHHhcCCCCcccccccc
Confidence               8999999999987632                            389999999 579999996431           


Q ss_pred             -----CCCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCcccccccccc
Q psy4039         335 -----AQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIE  409 (588)
Q Consensus       335 -----~~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~  409 (588)
                           ..+++.++..++.|++.||.|||+++|+||||||+|||++.+     ..+||+|||+++..........   ...
T Consensus       114 ~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~nili~~~-----~~~kl~dfg~~~~~~~~~~~~~---~~~  185 (283)
T cd05090         114 DGTVKSSLDHGDFLHIAIQIAAGMEYLSSHFFVHKDLAARNILIGEQ-----LHVKISDLGLSREIYSADYYRV---QPK  185 (283)
T ss_pred             ccccccccCHHHHHHHHHHHHHHHHHHHhcCeehhccccceEEEcCC-----CcEEeccccccccccCCcceec---ccC
Confidence                 247899999999999999999999999999999999999987     7899999999987543221111   123


Q ss_pred             ccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCccccccc---cccccccCCCCCCccHHHHHHH
Q psy4039         410 LGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNT---DYEVNALPQLNTNVPEVMRRLV  485 (588)
Q Consensus       410 ~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~---~~~~~~~~~~~~~~~~~l~~Li  485 (588)
                      ..++..|+|||++.+..      .+.++|||||||++|||++ |..||.+.....   .......+..+..+++.+.+++
T Consensus       186 ~~~~~~y~aPE~~~~~~------~~~~~Dv~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li  259 (283)
T cd05090         186 SLLPIRWMPPEAIMYGK------FSSDSDIWSFGVVLWEIFSFGLQPYYGFSNQEVIEMVRKRQLLPCSEDCPPRMYSLM  259 (283)
T ss_pred             CCccceecChHHhccCC------CCchhhhHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCcCCCCCCCCHHHHHHH
Confidence            44678899999986554      4578999999999999998 999997632211   1112223345677899999999


Q ss_pred             HHhhhhCCCCCCCHHHHHHHHh
Q psy4039         486 AKLLENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       486 ~~~L~~dP~~Rps~~e~l~~L~  507 (588)
                      .+||+.||.+||++.++++.+.
T Consensus       260 ~~cl~~~p~~Rp~~~~i~~~l~  281 (283)
T cd05090         260 TECWQEGPSRRPRFKDIHTRLR  281 (283)
T ss_pred             HHHcccCcccCcCHHHHHHHhh
Confidence            9999999999999999988665

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=100.00  E-value=7.3e-39  Score=326.26  Aligned_cols=261  Identities=19%  Similarity=0.213  Sum_probs=201.3

Q ss_pred             cccCCeEEeeeecccCceeEEEEEEC--Ce----eEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhc
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFR--GV----EYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVE  266 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~----~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~  266 (588)
                      +..++|++.+.||+|+||+||+|++.  +.    .||||++.......                ....+.+|+.++..+ 
T Consensus         4 l~~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~----------------~~~~~~~e~~~l~~~-   66 (279)
T cd05109           4 LKETELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPK----------------ANKEILDEAYVMAGV-   66 (279)
T ss_pred             cchhheeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHH----------------HHHHHHHHHHHHHhc-
Confidence            34588999999999999999999875  33    58999985322110                123455678888776 


Q ss_pred             CCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHH
Q psy4039         267 NLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLL  345 (588)
Q Consensus       267 ~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i  345 (588)
                         .||||+++++++...                             ..+++||++ +|+|.+++......+++..+..+
T Consensus        67 ---~~~~i~~~~~~~~~~-----------------------------~~~l~~~~~~~g~l~~~l~~~~~~~~~~~~~~~  114 (279)
T cd05109          67 ---GSPYVCRLLGICLTS-----------------------------TVQLVTQLMPYGCLLDYVRENKDRIGSQDLLNW  114 (279)
T ss_pred             ---CCCCCceEEEEEcCC-----------------------------CcEEEEEcCCCCCHHHHHhhccCCCCHHHHHHH
Confidence               899999999988642                             267899999 68999999876557999999999


Q ss_pred             HHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcC
Q psy4039         346 FTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALAT  425 (588)
Q Consensus       346 ~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~  425 (588)
                      +.|++.||.|||+++|+||||||+|||++++     +.+||+|||+++.........   ......+++.|+|||.+.+.
T Consensus       115 ~~qi~~~L~~lH~~~iiH~dlkp~Nil~~~~-----~~~kL~dfG~~~~~~~~~~~~---~~~~~~~~~~y~~PE~~~~~  186 (279)
T cd05109         115 CVQIAKGMSYLEEVRLVHRDLAARNVLVKSP-----NHVKITDFGLARLLDIDETEY---HADGGKVPIKWMALESILHR  186 (279)
T ss_pred             HHHHHHHHHHHHHCCeeccccccceEEEcCC-----CcEEECCCCceeeccccccee---ecCCCccchhhCCHHHhccC
Confidence            9999999999999999999999999999877     789999999998764322110   11123356789999998665


Q ss_pred             CCCccCCCCCcCchhhHHHHHHHHhc-CCCCCccccccc---cccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHH
Q psy4039         426 PGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNT---DYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAEL  501 (588)
Q Consensus       426 ~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~---~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e  501 (588)
                      .      ++.++|||||||++|||++ |..||.......   .......++.+..++.++.+++.+||+.||++||++.+
T Consensus       187 ~------~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~  260 (279)
T cd05109         187 R------FTHQSDVWSYGVTVWELMTFGAKPYDGIPAREIPDLLEKGERLPQPPICTIDVYMIMVKCWMIDSECRPRFRE  260 (279)
T ss_pred             C------CCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHCCCcCCCCccCCHHHHHHHHHHcCCChhhCcCHHH
Confidence            4      4578999999999999998 899986532111   11122233445678899999999999999999999999


Q ss_pred             HHHHHhhhhhcCCcc
Q psy4039         502 AATVCQLYLWAPKHW  516 (588)
Q Consensus       502 ~l~~L~~~~~~~h~w  516 (588)
                      ++..+......+.+|
T Consensus       261 l~~~l~~~~~~~~~~  275 (279)
T cd05109         261 LVDEFSRMARDPSRF  275 (279)
T ss_pred             HHHHHHHhhcCCcCe
Confidence            998777665444444

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=100.00  E-value=9.1e-39  Score=325.53  Aligned_cols=269  Identities=18%  Similarity=0.200  Sum_probs=203.2

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||.||++.+.  |..||||.+.......                ....+..|+.++.+.   ..|||
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~----------------~~~~~~~e~~~~~~~---~~~~~   61 (283)
T cd06617           1 DDLEVIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQ----------------EQKRLLMDLDISMRS---VDCPY   61 (283)
T ss_pred             CCceEEEEecccCCeEEEEEEEcCCCcEEEEEEEecCCCcH----------------HHHHHHHHHHHHHHH---cCCCC
Confidence            47899999999999999999997  8899999985321111                011222344443332   48999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHh---cCCCCHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRER---CAQLSMHERVLLFTQLL  350 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~---~~~l~~~~~~~i~~ql~  350 (588)
                      |+++++++.+..                            ..+++|||++|+|.+++...   ...+++..++.++.|++
T Consensus        62 iv~~~~~~~~~~----------------------------~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~qi~  113 (283)
T cd06617          62 TVTFYGALFREG----------------------------DVWICMEVMDTSLDKFYKKVYDKGLTIPEDILGKIAVSIV  113 (283)
T ss_pred             eeeeeEEEecCC----------------------------cEEEEhhhhcccHHHHHHHhccCCCCCCHHHHHHHHHHHH
Confidence            999999987632                            38999999999999988753   34689999999999999


Q ss_pred             HHHHHHHhC-CceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCc
Q psy4039         351 EGVTHLNMH-RTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF  429 (588)
Q Consensus       351 ~gL~yLH~~-~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~  429 (588)
                      .||.|||++ +++||||||+|||++.+     +.+||+|||+++.......      .....|+..|+|||++.+...  
T Consensus       114 ~~l~~lH~~~~i~h~dlkp~nil~~~~-----~~~kl~dfg~~~~~~~~~~------~~~~~~~~~y~aPE~~~~~~~--  180 (283)
T cd06617         114 KALEYLHSKLSVIHRDVKPSNVLINRN-----GQVKLCDFGISGYLVDSVA------KTIDAGCKPYMAPERINPELN--  180 (283)
T ss_pred             HHHHHHhhcCCeecCCCCHHHEEECCC-----CCEEEeecccccccccccc------cccccCCccccChhhcCCccc--
Confidence            999999997 99999999999999987     7999999999976543211      112458899999999865321  


Q ss_pred             cCCCCCcCchhhHHHHHHHHhcCCCCCcccccc-c---cccccccCCCC-CCccHHHHHHHHHhhhhCCCCCCCHHHHHH
Q psy4039         430 SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARN-T---DYEVNALPQLN-TNVPEVMRRLVAKLLENDPSDRPSAELAAT  504 (588)
Q Consensus       430 ~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~-~---~~~~~~~~~~~-~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~  504 (588)
                      ...++.++|+|||||++|||++|..||...... .   .......+.++ ..+|+++.++|.+||..+|++||+++++++
T Consensus       181 ~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~  260 (283)
T cd06617         181 QKGYDVKSDVWSLGITMIELATGRFPYDSWKTPFQQLKQVVEEPSPQLPAEKFSPEFQDFVNKCLKKNYKERPNYPELLQ  260 (283)
T ss_pred             ccccCccccchhhHHHHHHHHhCCCCCCccccCHHHHHHHHhcCCCCCCccccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            011457899999999999999999999642111 0   01111222222 357899999999999999999999999999


Q ss_pred             HHhhhhhcCCccccCCCCChhHHHHHHHh
Q psy4039         505 VCQLYLWAPKHWLYGATPSHNEIMQWLLT  533 (588)
Q Consensus       505 ~L~~~~~~~h~w~~~~~~~~~~~~~~l~~  533 (588)
                               |||+....-...+..+++..
T Consensus       261 ---------~~~~~~~~~~~~~~~~~~~~  280 (283)
T cd06617         261 ---------HPFFELHLSKNTDVASFVSL  280 (283)
T ss_pred             ---------CchhhhcccccHHHHHHHHh
Confidence                     99999666555555555543

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=100.00  E-value=1.1e-38  Score=330.43  Aligned_cols=260  Identities=21%  Similarity=0.274  Sum_probs=202.0

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||.||++.+.  +..||+|.+....   ..             .....+.+|+++++.+    +|||
T Consensus         1 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~---~~-------------~~~~~~~~E~~~l~~l----~h~~   60 (308)
T cd06615           1 DDFEKLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEI---KP-------------AIRNQIIRELKVLHEC----NSPY   60 (308)
T ss_pred             CCceEEeeccCCCCeEEEEEEEcCCCeEEEEEEecccc---CH-------------HHHHHHHHHHHHHHhC----CCCC
Confidence            47899999999999999999986  7889999984311   00             0123456799999887    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |++++++|.+..                            .++++|||+ +++|.+++.... .+++..+..++.|+++|
T Consensus        61 iv~~~~~~~~~~----------------------------~~~lv~ey~~~~~L~~~l~~~~-~~~~~~~~~~~~~i~~~  111 (308)
T cd06615          61 IVGFYGAFYSDG----------------------------EISICMEHMDGGSLDQVLKKAG-RIPENILGKISIAVLRG  111 (308)
T ss_pred             CCeEEEEEeeCC----------------------------EEEEEeeccCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHH
Confidence            999999987632                            499999999 579999998764 78999999999999999


Q ss_pred             HHHHHh-CCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccC
Q psy4039         353 VTHLNM-HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF  431 (588)
Q Consensus       353 L~yLH~-~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~  431 (588)
                      |.|||+ .+++||||||+|||++.+     +.+||+|||++........       ....|++.|+|||++.+..     
T Consensus       112 l~~lH~~~~i~H~dl~p~nil~~~~-----~~~~l~dfg~~~~~~~~~~-------~~~~~~~~~~aPE~~~~~~-----  174 (308)
T cd06615         112 LTYLREKHKIMHRDVKPSNILVNSR-----GEIKLCDFGVSGQLIDSMA-------NSFVGTRSYMSPERLQGTH-----  174 (308)
T ss_pred             HHHHHhhCCEEECCCChHHEEEecC-----CcEEEccCCCccccccccc-------ccCCCCcCccChhHhcCCC-----
Confidence            999997 699999999999999987     7899999999875433211       1456899999999986543     


Q ss_pred             CCCCcCchhhHHHHHHHHhcCCCCCcccccccccc---------------------------------------ccccCC
Q psy4039         432 VNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE---------------------------------------VNALPQ  472 (588)
Q Consensus       432 ~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~---------------------------------------~~~~~~  472 (588)
                       .+.++|||||||++|||++|+.||..........                                       ....+.
T Consensus       175 -~~~~~DiwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (308)
T cd06615         175 -YTVQSDIWSLGLSLVEMAIGRYPIPPPDAKELEAMFGRPVSEGEAKESHRPVSGHPPDSPRPMAIFELLDYIVNEPPPK  253 (308)
T ss_pred             -CCccchHHHHHHHHHHHHhCCCCCCCcchhhHHHhhcCccccccccCCcccccCCCCCccchhhHHHHHHHHhcCCCcc
Confidence             4468999999999999999999986421100000                                       000111


Q ss_pred             CC-CCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccCCCCChhHHHHHH
Q psy4039         473 LN-TNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGATPSHNEIMQWL  531 (588)
Q Consensus       473 ~~-~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~~~~~~~~~~~l  531 (588)
                      .+ ..++.++++++.+||..||++|||+.++++         |||+....-...+..+|.
T Consensus       254 ~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~---------~~~~~~~~~~~~~~~~~~  304 (308)
T cd06615         254 LPSGAFSDEFQDFVDKCLKKNPKERADLKELTK---------HPFIKRAELEEVDFAGWV  304 (308)
T ss_pred             CcCcccCHHHHHHHHHHccCChhhCcCHHHHhc---------Chhhhhcccccchhhhhh
Confidence            11 236788999999999999999999999999         999985444444444554

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>KOG0667|consensus

Probab=100.00  E-value=4.3e-39  Score=344.70  Aligned_cols=250  Identities=23%  Similarity=0.254  Sum_probs=197.8

Q ss_pred             CeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCC-C-CCC
Q psy4039         197 DIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENL-P-PHP  272 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l-~-~Hp  272 (588)
                      +|.+.+.||+|+||.|.+|.+.  ++.||||++++...          +.        .+-..|+.||..|+.. . .--
T Consensus       187 rY~V~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~k~----------f~--------~Q~~~Ei~iL~~ln~~d~~~~~  248 (586)
T KOG0667|consen  187 RYEVLEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNKKR----------FL--------RQAQIEIRILELLNKHDPDDKY  248 (586)
T ss_pred             EEEEEEEecccccceeEEEEecCCCcEEEEEeeccChH----------HH--------HHHHHHHHHHHHHhccCCCCCe
Confidence            7899999999999999999997  78999999975321          11        1223589999998421 1 234


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhc-CCCCHHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERC-AQLSMHERVLLFTQLLE  351 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~-~~l~~~~~~~i~~ql~~  351 (588)
                      |+|+++++|....                            +++||+|.+..+|.++|+.+. ..|+...++.|+.||+.
T Consensus       249 n~Vrm~d~F~fr~----------------------------HlciVfELL~~NLYellK~n~f~Glsl~~ir~~~~Qil~  300 (586)
T KOG0667|consen  249 NIVRMLDYFYFRN----------------------------HLCIVFELLSTNLYELLKNNKFRGLSLPLVRKFAQQILT  300 (586)
T ss_pred             eEEEeeecccccc----------------------------ceeeeehhhhhhHHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence            9999999998632                            599999999999999999863 46999999999999999


Q ss_pred             HHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccC
Q psy4039         352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF  431 (588)
Q Consensus       352 gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~  431 (588)
                      ||.+||+.+|||+||||+||||.+-..   ..+||+|||.|........        +..-+..|.|||++.+.+     
T Consensus       301 ~L~~L~~l~IIHcDLKPENILL~~~~r---~~vKVIDFGSSc~~~q~vy--------tYiQSRfYRAPEVILGlp-----  364 (586)
T KOG0667|consen  301 ALLFLHELGIIHCDLKPENILLKDPKR---SRIKVIDFGSSCFESQRVY--------TYIQSRFYRAPEVILGLP-----  364 (586)
T ss_pred             HHHHHHhCCeeeccCChhheeeccCCc---CceeEEecccccccCCcce--------eeeeccccccchhhccCC-----
Confidence            999999999999999999999986532   5899999999987655432        345677999999999988     


Q ss_pred             CCCCcCchhhHHHHHHHHhcCCCCCcccc------------------------------cc--cccc-----c-------
Q psy4039         432 VNYSKSDAWTAGTVAYEIFGHDNPFYQSA------------------------------RN--TDYE-----V-------  467 (588)
Q Consensus       432 ~~~~ksDVwS~Gvil~ElltG~~Pf~~~~------------------------------~~--~~~~-----~-------  467 (588)
                       ++.+.||||||||+.||++|.+.|.++.                              ..  ....     .       
T Consensus       365 -Y~~~IDmWSLGCIlAEL~tG~PLfpG~ne~DQl~~I~e~lG~Pp~~mL~~~~~~~kff~~~~~~~~~~~~~~~~~~~k~  443 (586)
T KOG0667|consen  365 -YDTAIDMWSLGCILAELFTGEPLFPGDNEYDQLARIIEVLGLPPPKMLDTAKKAHKFFTSLKGFPRLCVETSAPRGTKS  443 (586)
T ss_pred             -CCCccceeehhhhHHhHhcCccccCCCCHHHHHHHHHHHhCCCCHHHHHhccccceehhccCCceeeeeeecccccccc
Confidence             6689999999999999999988887620                              00  0000     0       


Q ss_pred             -------------cccC-C-------CCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCcccc
Q psy4039         468 -------------NALP-Q-------LNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLY  518 (588)
Q Consensus       468 -------------~~~~-~-------~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~  518 (588)
                                   ...| .       +...-...+.|++++||+.||.+|+|+.++++         |||+.
T Consensus       444 ~~~~~~~~~~~~~~~~P~~~~~l~~~~~~~~~~~F~dflk~~L~~dP~~R~tp~qal~---------Hpfl~  506 (586)
T KOG0667|consen  444 PEVRKYYRKARLERRGPPGSRSLESGLPKADDKLFIDFLKRCLEWDPAERITPAQALN---------HPFLT  506 (586)
T ss_pred             hhhhhhhhhhcccccCCCCCcccchhcccccHHHHHHHHHHHhccCchhcCCHHHHhc---------Ccccc
Confidence                         0001 0       00011245799999999999999999999999         99998

>KOG0610|consensus

Probab=100.00  E-value=1.9e-39  Score=329.45  Aligned_cols=264  Identities=22%  Similarity=0.277  Sum_probs=210.8

Q ss_pred             CccccccCCeEEeeeecccCceeEEEEEECC--eeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhc
Q psy4039         189 DVDDVKVDDIQIGKFIAKGTNAVVYEATFRG--VEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVE  266 (588)
Q Consensus       189 ~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~g--~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~  266 (588)
                      ....+.++.|++.+.||+|.-|+||++.+++  ..+|+|+|.+.....     .+         .-.+...|-+||+.+ 
T Consensus        70 ~~~~l~l~~f~llk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~-----rk---------Kl~Ra~tE~eIL~~l-  134 (459)
T KOG0610|consen   70 KDGSLGLRHFRLLKRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLAS-----RK---------KLKRAQTEREILSLL-  134 (459)
T ss_pred             CCCccCHHHHHHHHHcCCCCceeEEEEEecCCCceEEEEEecHHHHhh-----hh---------HHHHHHHHHHHHHhc-
Confidence            4456777999999999999999999999985  799999995422211     01         222345588888887 


Q ss_pred             CCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh-cCCCCHHHHHH
Q psy4039         267 NLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER-CAQLSMHERVL  344 (588)
Q Consensus       267 ~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~-~~~l~~~~~~~  344 (588)
                         .||-+..||..|+.+.                            ..+++|||| +|+|..+++.+ +..+++..++.
T Consensus       135 ---DHPFlPTLYa~fet~~----------------------------~~cl~meyCpGGdL~~LrqkQp~~~fse~~aRF  183 (459)
T KOG0610|consen  135 ---DHPFLPTLYASFETDK----------------------------YSCLVMEYCPGGDLHSLRQKQPGKRFSESAARF  183 (459)
T ss_pred             ---CCCccchhhheeeccc----------------------------eeEEEEecCCCccHHHHHhhCCCCccchhhHHH
Confidence               9999999999998743                            499999999 78999999876 45799999999


Q ss_pred             HHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCC-------------------------
Q psy4039         345 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGL-------------------------  399 (588)
Q Consensus       345 i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~-------------------------  399 (588)
                      ++..|+-||+|||-.|||.|||||+||||.++     +++.|+||.++.......                         
T Consensus       184 YaAEvl~ALEYLHmlGivYRDLKPENILvred-----GHIMLsDFDLS~~~~~~Pt~~~s~~~~~~~~~~~~~~~~~s~f  258 (459)
T KOG0610|consen  184 YAAEVLLALEYLHMLGIVYRDLKPENILVRED-----GHIMLSDFDLSLRCPVSPTLVKSSSPRSSGSQPSCRSRQPSCF  258 (459)
T ss_pred             HHHHHHHHHHHHHhhceeeccCCcceeEEecC-----CcEEeeeccccccCCCCCeeeccCCCCCCCCCccccccccccc
Confidence            99999999999999999999999999999998     999999999876421100                         


Q ss_pred             --------c------------------cccccccccccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhcCC
Q psy4039         400 --------S------------------MQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHD  453 (588)
Q Consensus       400 --------~------------------~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~  453 (588)
                              .                  .+.......++||-.|+|||++.+..      .+.++|+|+|||++|||+.|.
T Consensus       259 ~~r~~~~~~~~~k~~~~~~~~~p~~~aep~~~RSnSFVGThEYlAPEvI~G~G------HgsAVDWWtfGIflYEmLyG~  332 (459)
T KOG0610|consen  259 SPRCLSSSKKRKKKDESASRSLPELVAEPTGARSNSFVGTHEYLAPEVIRGEG------HGSAVDWWTFGIFLYEMLYGT  332 (459)
T ss_pred             ccchhccccccccccccccccchhhhcCCCCccccccccccccccceeeecCC------CCchhhHHHHHHHHHHHHhCC
Confidence                    0                  00011223568999999999999886      457799999999999999999


Q ss_pred             CCCcccccccccccc--ccCCCC--CCccHHHHHHHHHhhhhCCCCCCC----HHHHHHHHhhhhhcCCcccc
Q psy4039         454 NPFYQSARNTDYEVN--ALPQLN--TNVPEVMRRLVAKLLENDPSDRPS----AELAATVCQLYLWAPKHWLY  518 (588)
Q Consensus       454 ~Pf~~~~~~~~~~~~--~~~~~~--~~~~~~l~~Li~~~L~~dP~~Rps----~~e~l~~L~~~~~~~h~w~~  518 (588)
                      .||.+......+...  ..+.++  ..++..++|||+++|.+||.+|..    +.||.+         ||||+
T Consensus       333 TPFKG~~~~~Tl~NIv~~~l~Fp~~~~vs~~akDLIr~LLvKdP~kRlg~~rGA~eIK~---------HpFF~  396 (459)
T KOG0610|consen  333 TPFKGSNNKETLRNIVGQPLKFPEEPEVSSAAKDLIRKLLVKDPSKRLGSKRGAAEIKR---------HPFFE  396 (459)
T ss_pred             CCcCCCCchhhHHHHhcCCCcCCCCCcchhHHHHHHHHHhccChhhhhccccchHHhhc---------Ccccc
Confidence            999987655443321  111222  256789999999999999999998    888888         99987

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=100.00  E-value=1.3e-38  Score=321.56  Aligned_cols=257  Identities=23%  Similarity=0.256  Sum_probs=201.7

Q ss_pred             CeEEeeeecccCceeEEEEEEC-CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceE
Q psy4039         197 DIQIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVV  275 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~~~-g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV  275 (588)
                      +|++++.||+|+||.||+|... +..+|||.+..........   .   +     ....+.+|+.+++.+    +|+||+
T Consensus         1 ~~~~~~~ig~g~~~~v~~~~~~~~~~~avk~~~~~~~~~~~~---~---~-----~~~~~~~e~~~l~~l----~~~~i~   65 (265)
T cd06631           1 EWTKGEVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAA---E---K-----EYEKLQEEVDLLKSL----KHVNIV   65 (265)
T ss_pred             CccccceEeccCCeEEEEEEEcCCCeEEEEEeecCccchhhH---H---H-----HHHHHHHHHHHHHhc----CCCCEe
Confidence            4778899999999999999875 7889999985322111100   0   0     123466799999887    899999


Q ss_pred             EEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy4039         276 VMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVT  354 (588)
Q Consensus       276 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~  354 (588)
                      ++++++.+.                            ...+++|||+ +++|.+++.... .+++..+..++.|++.||.
T Consensus        66 ~~~~~~~~~----------------------------~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~  116 (265)
T cd06631          66 QYLGTCLDD----------------------------NTISIFMEFVPGGSISSILNRFG-PLPEPVFCKYTKQILDGVA  116 (265)
T ss_pred             eEeeEeecC----------------------------CeEEEEEecCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHH
Confidence            999998763                            2489999999 679999997654 7899999999999999999


Q ss_pred             HHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCC-CccccccccccccCCccccchhHHhcCCCCccCCC
Q psy4039         355 HLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSG-LSMQYSSADIELGGNVALMAPEVALATPGLFSFVN  433 (588)
Q Consensus       355 yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~-~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~  433 (588)
                      |||+.+|+|+||||+||+++++     +.++|+|||++...... .....+.......||..|+|||++.+..      .
T Consensus       117 ~lH~~~i~H~dl~p~nil~~~~-----~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~------~  185 (265)
T cd06631         117 YLHNNCVVHRDIKGNNVMLMPN-----GIIKLIDFGCARRLAWVGLHGTHSNMLKSMHGTPYWMAPEVINESG------Y  185 (265)
T ss_pred             HHHhCCcccCCcCHHhEEECCC-----CeEEeccchhhHhhhhccccccccccccccCCCccccChhhhcCCC------C
Confidence            9999999999999999999977     79999999998764321 1111111122456899999999987654      4


Q ss_pred             CCcCchhhHHHHHHHHhcCCCCCccccccccc-----cccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhh
Q psy4039         434 YSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY-----EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQL  508 (588)
Q Consensus       434 ~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~-----~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~  508 (588)
                      +.++|||||||++|+|++|..||.........     .....+.++..++.++.+++++||+.+|++||++.++++    
T Consensus       186 ~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~l~----  261 (265)
T cd06631         186 GRKSDIWSIGCTVFEMATGKPPLASMDRLAAMFYIGAHRGLMPRLPDSFSAAAIDFVTSCLTRDQHERPSALQLLR----  261 (265)
T ss_pred             cchhhHHHHHHHHHHHHhCCCccccCChHHHHHHhhhccCCCCCCCCCCCHHHHHHHHHHhcCCcccCCCHHHHhc----
Confidence            57899999999999999999999753211111     112345567788999999999999999999999999999    


Q ss_pred             hhhcCCccc
Q psy4039         509 YLWAPKHWL  517 (588)
Q Consensus       509 ~~~~~h~w~  517 (588)
                           |||+
T Consensus       262 -----~~~~  265 (265)
T cd06631         262 -----HDFL  265 (265)
T ss_pred             -----CCCC
Confidence                 9996

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=100.00  E-value=1.2e-38  Score=321.07  Aligned_cols=248  Identities=22%  Similarity=0.267  Sum_probs=196.4

Q ss_pred             ccCCeEEeeeecccCceeEEEEEECC-eeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         194 KVDDIQIGKFIAKGTNAVVYEATFRG-VEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       194 ~~~~~~~~~~IG~G~fG~Vy~a~~~g-~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      +.++|++.+.||+|+||.||.|.+.+ ..||||.+.....                  ....+.+|+.+++.+    +||
T Consensus         2 ~~~~~~~~~~lg~G~~~~vy~~~~~~~~~~aik~~~~~~~------------------~~~~~~~e~~~l~~l----~h~   59 (256)
T cd05113           2 DPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM------------------SEDEFIEEAKVMMKL----SHE   59 (256)
T ss_pred             ChHHeEEeeEecCcccceEEEEEecCCCcEEEEEcCCCcc------------------cHHHHHHHHHHHhcC----CCC
Confidence            45789999999999999999998874 4699999853211                  123456788888887    899


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLE  351 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~  351 (588)
                      ||+++++++.+..                            ..+++|||+ +|+|.+++......+++.+++.++.|++.
T Consensus        60 ~i~~~~~~~~~~~----------------------------~~~lv~e~~~~~~l~~~i~~~~~~~~~~~~~~~~~~i~~  111 (256)
T cd05113          60 KLVQLYGVCTKQR----------------------------PIYIVTEYMSNGCLLNYLREHGKRFQPSQLLEMCKDVCE  111 (256)
T ss_pred             CeeeEEEEEccCC----------------------------CcEEEEEcCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence            9999999987632                            279999999 57999999876557999999999999999


Q ss_pred             HHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccC
Q psy4039         352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF  431 (588)
Q Consensus       352 gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~  431 (588)
                      ||.|||+.||+|+||||+||+++.+     +.+||+|||+++........    ......++..|+|||++.+..     
T Consensus       112 ~l~~lH~~~i~H~dl~p~nili~~~-----~~~kl~d~g~~~~~~~~~~~----~~~~~~~~~~y~~pe~~~~~~-----  177 (256)
T cd05113         112 GMAYLESKQFIHRDLAARNCLVDDQ-----GCVKVSDFGLSRYVLDDEYT----SSVGSKFPVRWSPPEVLLYSK-----  177 (256)
T ss_pred             HHHHHHhCCeeccccCcceEEEcCC-----CCEEECCCccceecCCCcee----ecCCCccChhhCCHHHHhcCc-----
Confidence            9999999999999999999999987     78999999998765432111    111234667899999997554     


Q ss_pred             CCCCcCchhhHHHHHHHHhc-CCCCCccccccc---cccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHH
Q psy4039         432 VNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNT---DYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVC  506 (588)
Q Consensus       432 ~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~---~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L  506 (588)
                       ++.++|||||||++|||++ |..||.......   .......+..+...++.+++++.+||+.||.+||++.+++..+
T Consensus       178 -~~~~~Di~slG~~l~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~ll~~~  255 (256)
T cd05113         178 -FSSKSDVWAFGVLMWEVYSLGKMPYERFNNSETVEKVSQGLRLYRPHLASEKVYAIMYSCWHEKAEERPTFQQLLSSI  255 (256)
T ss_pred             -ccchhHHHHHHHHHHHHhcCCCCCcCcCCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHhh
Confidence             4578999999999999998 999986532111   1112223334456789999999999999999999999998754

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=100.00  E-value=8.5e-39  Score=325.45  Aligned_cols=255  Identities=21%  Similarity=0.257  Sum_probs=197.6

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEEC-------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHh
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATFR-------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMN  263 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~  263 (588)
                      |.+..++|++.+.||+|+||.||+|.+.       +..||||++......                .....+.+|+.+++
T Consensus         1 ~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~----------------~~~~~~~~e~~~l~   64 (277)
T cd05062           1 WEVAREKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASM----------------RERIEFLNEASVMK   64 (277)
T ss_pred             CcccHHHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCH----------------HHHHHHHHHHHHHH
Confidence            3455688999999999999999999875       357999997421100                01223567888888


Q ss_pred             hhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc--------
Q psy4039         264 SVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC--------  334 (588)
Q Consensus       264 ~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~--------  334 (588)
                      .+    +||||+++++++.+..                            ..++||||+ +++|.+++....        
T Consensus        65 ~l----~~~~iv~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~  112 (277)
T cd05062          65 EF----NCHHVVRLLGVVSQGQ----------------------------PTLVIMELMTRGDLKSYLRSLRPEMENNPV  112 (277)
T ss_pred             hC----CCCCeeeEEEEEcCCC----------------------------CeEEEEecCCCCCHHHHHHHcCcccccccc
Confidence            87    9999999999886532                            389999999 689999997632        


Q ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCC
Q psy4039         335 -AQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGN  413 (588)
Q Consensus       335 -~~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT  413 (588)
                       ..+++..+..++.|+++||.|||+.+++||||||+||+++++     +.++|+|||+++..........   .....++
T Consensus       113 ~~~~~~~~~~~~~~~l~~~l~~lH~~~~vH~dlkp~Nil~~~~-----~~~~l~dfg~~~~~~~~~~~~~---~~~~~~~  184 (277)
T cd05062         113 QAPPSLKKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAED-----FTVKIGDFGMTRDIYETDYYRK---GGKGLLP  184 (277)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHCCcccCCcchheEEEcCC-----CCEEECCCCCccccCCcceeec---CCCCccC
Confidence             136788999999999999999999999999999999999987     7899999999976543221110   1123467


Q ss_pred             ccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCccccccccc---cccccCCCCCCccHHHHHHHHHhh
Q psy4039         414 VALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTDY---EVNALPQLNTNVPEVMRRLVAKLL  489 (588)
Q Consensus       414 ~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~~---~~~~~~~~~~~~~~~l~~Li~~~L  489 (588)
                      +.|||||++.+..      .+.++|||||||++|||++ |..||.+.......   .....+..+..+++.+++++.+||
T Consensus       185 ~~y~aPE~~~~~~------~~~~~Di~slG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l  258 (277)
T cd05062         185 VRWMSPESLKDGV------FTTYSDVWSFGVVLWEIATLAEQPYQGMSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMCW  258 (277)
T ss_pred             HhhcChhHhhcCC------cCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHc
Confidence            8999999987654      4578999999999999998 78898764322111   122334456778999999999999


Q ss_pred             hhCCCCCCCHHHHHHHHh
Q psy4039         490 ENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       490 ~~dP~~Rps~~e~l~~L~  507 (588)
                      +.||++|||+.++++.++
T Consensus       259 ~~~p~~Rps~~e~l~~l~  276 (277)
T cd05062         259 QYNPKMRPSFLEIISSIK  276 (277)
T ss_pred             CCChhhCcCHHHHHHHhh
Confidence            999999999999988654

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>KOG0607|consensus

Probab=100.00  E-value=4.9e-40  Score=323.08  Aligned_cols=262  Identities=21%  Similarity=0.323  Sum_probs=205.5

Q ss_pred             eEE-eeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCce
Q psy4039         198 IQI-GKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNV  274 (588)
Q Consensus       198 ~~~-~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNI  274 (588)
                      |++ .+.||+|+|+.|--|+..  |.+||||+|.+..-                 -.+.++-+|++++..+   ..|+||
T Consensus        79 YkLt~e~LGeGAyasVqtcv~i~t~~EYAVKiidKq~g-----------------HsR~RvfREVe~f~~C---qgh~ni  138 (463)
T KOG0607|consen   79 YKLTSELLGEGAYASVQTCVSIQTGKEYAVKIIDKQPG-----------------HSRSRVFREVETFYQC---QGHKNI  138 (463)
T ss_pred             HHhHHHHhcCccceeeeeeeeeccchhhhhhhhhcCCc-----------------hHHHHHHHHHHHHHHh---cCCccH
Confidence            444 367999999999988775  89999999964311                 1334556799999888   589999


Q ss_pred             EEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         275 VVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       275 V~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      ++|+++|+++.                            .+|+|||.+ +|+|...|.++. .+++.++..+.++|+.||
T Consensus       139 lqLiefFEdd~----------------------------~FYLVfEKm~GGplLshI~~~~-~F~E~EAs~vvkdia~aL  189 (463)
T KOG0607|consen  139 LQLIEFFEDDT----------------------------RFYLVFEKMRGGPLLSHIQKRK-HFNEREASRVVKDIASAL  189 (463)
T ss_pred             HHHHHHhcccc----------------------------eEEEEEecccCchHHHHHHHhh-hccHHHHHHHHHHHHHHH
Confidence            99999999854                            499999999 689999998775 899999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCC--CCccccccccccccCCccccchhHHhcCCCCccC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKS--GLSMQYSSADIELGGNVALMAPEVALATPGLFSF  431 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~--~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~  431 (588)
                      .|||.+||.||||||+|||-.+.  +.-.-+|||||.+......  ......+....+.+|+..|||||+..--.+.-+ 
T Consensus       190 dFlH~kgIAHRDlKPENiLC~~p--n~vsPvKiCDfDLgSg~k~~~~~spastP~L~tPvGSAEfMAPEVVd~fv~qA~-  266 (463)
T KOG0607|consen  190 DFLHTKGIAHRDLKPENILCESP--NKVSPVKICDFDLGSGIKLNNDCSPASTPELLTPVGSAEFMAPEVVDVFVDQAT-  266 (463)
T ss_pred             HHHhhcCcccccCCccceeecCC--CCcCceeeeccccccccccCCCCCCCCCccccCcccchhhcchhHHhhhccccc-
Confidence            99999999999999999999754  3335799999998876443  222223444567899999999999763322211 


Q ss_pred             CCCCcCchhhHHHHHHHHhcCCCCCcccc-----------------------ccccccccccCCCCCCccHHHHHHHHHh
Q psy4039         432 VNYSKSDAWTAGTVAYEIFGHDNPFYQSA-----------------------RNTDYEVNALPQLNTNVPEVMRRLVAKL  488 (588)
Q Consensus       432 ~~~~ksDVwS~Gvil~ElltG~~Pf~~~~-----------------------~~~~~~~~~~~~~~~~~~~~l~~Li~~~  488 (588)
                      .|..+||.||+|||+|-|++|.+||.+..                       ....|+.  ...-|..++.+++||++.+
T Consensus       267 ~YDKrCDlwSLGvIlYImLsGYpPFvG~Cg~dCGWdrGe~Cr~CQ~~LFesIQEGkYeF--PdkdWahIS~eakdlisnL  344 (463)
T KOG0607|consen  267 FYDKRCDLWSLGVILYIMLSGYPPFVGHCGADCGWDRGEVCRVCQNKLFESIQEGKYEF--PDKDWAHISSEAKDLISNL  344 (463)
T ss_pred             cccccccHHHHHHHHHHHHhCCCCccCccCCcCCccCCCccHHHHHHHHHHHhccCCcC--ChhhhHHhhHHHHHHHHHH
Confidence            24567999999999999999999997621                       1111111  1122456899999999999


Q ss_pred             hhhCCCCCCCHHHHHHHHhhhhhcCCccccCCCC
Q psy4039         489 LENDPSDRPSAELAATVCQLYLWAPKHWLYGATP  522 (588)
Q Consensus       489 L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~~~  522 (588)
                      |..|+.+|.++.++++         |||++...+
T Consensus       345 lvrda~~rlsa~~vln---------hPw~~~~~~  369 (463)
T KOG0607|consen  345 LVRDAKQRLSAAQVLN---------HPWVQRCAP  369 (463)
T ss_pred             HhccHHhhhhhhhccC---------Cccccccch
Confidence            9999999999999888         999985444

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=100.00  E-value=1.1e-38  Score=326.88  Aligned_cols=264  Identities=21%  Similarity=0.238  Sum_probs=203.4

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEEC-------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHh
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATFR-------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMN  263 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~  263 (588)
                      |++..++|++.+.||+|+||.||+|.++       +..||||.+.....  ..              ....+.+|+.+++
T Consensus         1 ~~~~~~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~--~~--------------~~~~~~~e~~~l~   64 (288)
T cd05061           1 WEVSREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESAS--LR--------------ERIEFLNEASVMK   64 (288)
T ss_pred             CcccHHHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCC--HH--------------HHHHHHHHHHHHH
Confidence            5666789999999999999999999764       45899998742110  00              1123456888888


Q ss_pred             hhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc--------
Q psy4039         264 SVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC--------  334 (588)
Q Consensus       264 ~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~--------  334 (588)
                      .+    +||||+++++++.+..                            ..+++|||+ +|+|.+++....        
T Consensus        65 ~l----~~~~i~~~~~~~~~~~----------------------------~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~  112 (288)
T cd05061          65 GF----TCHHVVRLLGVVSKGQ----------------------------PTLVVMELMAHGDLKSYLRSLRPEAENNPG  112 (288)
T ss_pred             hC----CCCCeeeEEEEEcCCC----------------------------CcEEEEeCCCCCCHHHHHHHhccccccCCC
Confidence            87    8999999999886532                            389999999 689999997531        


Q ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCC
Q psy4039         335 -AQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGN  413 (588)
Q Consensus       335 -~~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT  413 (588)
                       ..+++..+..++.|++.||.|||+++|+||||||+|||++.+     +.++|+|||+++.........   ......++
T Consensus       113 ~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dikp~nili~~~-----~~~~L~Dfg~~~~~~~~~~~~---~~~~~~~~  184 (288)
T cd05061         113 RPPPTLQEMIQMAAEIADGMAYLNAKKFVHRDLAARNCMVAHD-----FTVKIGDFGMTRDIYETDYYR---KGGKGLLP  184 (288)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCCChheEEEcCC-----CcEEECcCCcccccccccccc---ccCCCccc
Confidence             235677889999999999999999999999999999999987     789999999998654321111   11123457


Q ss_pred             ccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCccccccccc---cccccCCCCCCccHHHHHHHHHhh
Q psy4039         414 VALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTDY---EVNALPQLNTNVPEVMRRLVAKLL  489 (588)
Q Consensus       414 ~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~~---~~~~~~~~~~~~~~~l~~Li~~~L  489 (588)
                      ..|+|||.+.+..      .+.++|||||||++|||++ |..||.+.......   .....+..+..+++.+++++.+||
T Consensus       185 ~~y~~pE~~~~~~------~~~~~DvwslG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l  258 (288)
T cd05061         185 VRWMAPESLKDGV------FTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVMDGGYLDQPDNCPERVTDLMRMCW  258 (288)
T ss_pred             ccccCHHHhccCC------CChHhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHc
Confidence            7899999987654      4578999999999999998 78898653221111   112233455677899999999999


Q ss_pred             hhCCCCCCCHHHHHHHHhhhhhcCCccccC
Q psy4039         490 ENDPSDRPSAELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       490 ~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~  519 (588)
                      +.||++|||+.++++.++..+   |||+.+
T Consensus       259 ~~~p~~Rps~~~ll~~l~~~~---~~~~~~  285 (288)
T cd05061         259 QFNPKMRPTFLEIVNLLKDDL---HPSFPE  285 (288)
T ss_pred             CCChhHCcCHHHHHHHHHhhc---CCCCCC
Confidence            999999999999999887665   888763

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>KOG0196|consensus

Probab=100.00  E-value=2.7e-40  Score=355.82  Aligned_cols=270  Identities=21%  Similarity=0.326  Sum_probs=228.7

Q ss_pred             ccCCCccccccCCeEEeeeecccCceeEEEEEEC-----CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHH
Q psy4039         185 ETLPDVDDVKVDDIQIGKFIAKGTNAVVYEATFR-----GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNED  259 (588)
Q Consensus       185 ~~~~~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-----g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei  259 (588)
                      +...+..+++.....+.++||.|.||.||+|+++     ...||||.++...                ....+.+|..|.
T Consensus       618 AvreFakEId~s~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~Gy----------------tekqrrdFL~EA  681 (996)
T KOG0196|consen  618 AVREFAKEIDPSCVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGY----------------TEKQRRDFLSEA  681 (996)
T ss_pred             HHHHhhhhcChhheEEEEEEecccccceecccccCCCCcceeEEEeeeccCc----------------cHHHHhhhhhhh
Confidence            3345677899999999999999999999999998     5689999995322                122567889999


Q ss_pred             HHHhhhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCC
Q psy4039         260 MLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLS  338 (588)
Q Consensus       260 ~il~~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~  338 (588)
                      .||.++    .||||++|.|+.+...|                            +.||.||| ||+|+.||+.+..+++
T Consensus       682 sIMGQF----dHPNIIrLEGVVTks~P----------------------------vMIiTEyMENGsLDsFLR~~DGqft  729 (996)
T KOG0196|consen  682 SIMGQF----DHPNIIRLEGVVTKSKP----------------------------VMIITEYMENGSLDSFLRQNDGQFT  729 (996)
T ss_pred             hhcccC----CCCcEEEEEEEEecCce----------------------------eEEEhhhhhCCcHHHHHhhcCCceE
Confidence            999998    99999999999987554                            89999999 8999999999988999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccC--Cccc
Q psy4039         339 MHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGG--NVAL  416 (588)
Q Consensus       339 ~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~G--T~~Y  416 (588)
                      ..+...++++|+.|+.||-+.+.|||||.++|||++.+     ..+|++|||++|.+.++....++    +.+|  .+.|
T Consensus       730 viQLVgMLrGIAsGMkYLsdm~YVHRDLAARNILVNsn-----LvCKVsDFGLSRvledd~~~~yt----t~GGKIPiRW  800 (996)
T KOG0196|consen  730 VIQLVGMLRGIASGMKYLSDMNYVHRDLAARNILVNSN-----LVCKVSDFGLSRVLEDDPEAAYT----TLGGKIPIRW  800 (996)
T ss_pred             eehHHHHHHHHHHHhHHHhhcCchhhhhhhhheeeccc-----eEEEeccccceeecccCCCcccc----ccCCccceee
Confidence            99999999999999999999999999999999999998     89999999999988765433333    3344  4589


Q ss_pred             cchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhC
Q psy4039         417 MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLEND  492 (588)
Q Consensus       417 ~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~d  492 (588)
                      .|||.+....      .+.+||||||||+|||.++ |..||++...+..   ++...+-+-|-+||..+..||..||++|
T Consensus       801 TAPEAIa~RK------FTsASDVWSyGIVmWEVmSyGERPYWdmSNQdVIkaIe~gyRLPpPmDCP~aL~qLMldCWqkd  874 (996)
T KOG0196|consen  801 TAPEAIAYRK------FTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVIKAIEQGYRLPPPMDCPAALYQLMLDCWQKD  874 (996)
T ss_pred             cChhHhhhcc------cCchhhccccceEEEEecccCCCcccccchHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHH
Confidence            9999997665      5588999999999999885 9999988544333   2334444557899999999999999999


Q ss_pred             CCCCCCHHHHHHHHhhhhhcCCccc
Q psy4039         493 PSDRPSAELAATVCQLYLWAPKHWL  517 (588)
Q Consensus       493 P~~Rps~~e~l~~L~~~~~~~h~w~  517 (588)
                      ...||.++|+++.|..+...|+.-.
T Consensus       875 R~~RP~F~qiV~~lDklIrnP~SLk  899 (996)
T KOG0196|consen  875 RNRRPKFAQIVSTLDKLIRNPNSLK  899 (996)
T ss_pred             hhcCCCHHHHHHHHHHHhcCchhhc
Confidence            9999999999999999887766543

>KOG0577|consensus

Probab=100.00  E-value=3.2e-40  Score=345.15  Aligned_cols=256  Identities=24%  Similarity=0.304  Sum_probs=209.3

Q ss_pred             CeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCce
Q psy4039         197 DIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNV  274 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNI  274 (588)
                      -|.-...||.|+||.||-|++.  ...||||+|.=...+++.              .-+++..|+.+|+.+    +|||+
T Consensus        27 lf~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~E--------------KWqDIlKEVrFL~~l----~HPnt   88 (948)
T KOG0577|consen   27 LFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNE--------------KWQDILKEVRFLRQL----RHPNT   88 (948)
T ss_pred             HHHHHHHhcCCccceeEEeeccCccceeeeeeccccccccHH--------------HHHHHHHHHHHHHhc----cCCCc
Confidence            3566678999999999999987  678999999422222111              335667799999998    99999


Q ss_pred             EEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy4039         275 VVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVT  354 (588)
Q Consensus       275 V~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~  354 (588)
                      |.+-|||-..                            .+.|+|||||-||-.+++.-...++-+.++..|+.+.+.||+
T Consensus        89 ieYkgCyLre----------------------------~TaWLVMEYClGSAsDlleVhkKplqEvEIAAi~~gaL~gLa  140 (948)
T KOG0577|consen   89 IEYKGCYLRE----------------------------HTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAITHGALQGLA  140 (948)
T ss_pred             ccccceeecc----------------------------chHHHHHHHHhccHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            9999998753                            248999999988888888877669999999999999999999


Q ss_pred             HHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCC
Q psy4039         355 HLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY  434 (588)
Q Consensus       355 yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~  434 (588)
                      |||+.+.||||||+.|||+.+.     +.|||+|||.|.....         ...++|||.|||||++..-...   .|+
T Consensus       141 YLHS~~~IHRDiKAGNILLse~-----g~VKLaDFGSAsi~~P---------AnsFvGTPywMAPEVILAMDEG---qYd  203 (948)
T KOG0577|consen  141 YLHSHNRIHRDIKAGNILLSEP-----GLVKLADFGSASIMAP---------ANSFVGTPYWMAPEVILAMDEG---QYD  203 (948)
T ss_pred             HHHHhhHHhhhccccceEecCC-----CeeeeccccchhhcCc---------hhcccCCccccchhHheecccc---ccC
Confidence            9999999999999999999988     8999999999866433         1268999999999999754321   256


Q ss_pred             CcCchhhHHHHHHHHhcCCCCCcccccccc-c--cccccCCCC-CCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhh
Q psy4039         435 SKSDAWTAGTVAYEIFGHDNPFYQSARNTD-Y--EVNALPQLN-TNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYL  510 (588)
Q Consensus       435 ~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~-~--~~~~~~~~~-~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~  510 (588)
                      -|+||||+|++..||.-.++|+++...... |  .....|.+. ..++..++.+|..||++-|.+|||.++++.      
T Consensus       204 gkvDvWSLGITCIELAERkPPlFnMNAMSALYHIAQNesPtLqs~eWS~~F~~Fvd~CLqKipqeRptse~ll~------  277 (948)
T KOG0577|consen  204 GKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPTLQSNEWSDYFRNFVDSCLQKIPQERPTSEELLK------  277 (948)
T ss_pred             CccceeeccchhhhhhhcCCCccCchHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHhhCcccCCcHHHHhh------
Confidence            799999999999999999999887533221 1  223334443 467899999999999999999999999999      


Q ss_pred             hcCCccccCCCCCh
Q psy4039         511 WAPKHWLYGATPSH  524 (588)
Q Consensus       511 ~~~h~w~~~~~~~~  524 (588)
                         |+|+....|..
T Consensus       278 ---H~fv~R~Rp~t  288 (948)
T KOG0577|consen  278 ---HRFVLRERPPT  288 (948)
T ss_pred             ---cchhccCCCch
Confidence               99998777654

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=100.00  E-value=1.3e-38  Score=321.94  Aligned_cols=253  Identities=21%  Similarity=0.310  Sum_probs=199.3

Q ss_pred             ccCCeEEeeeecccCceeEEEEEEC-----CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCC
Q psy4039         194 KVDDIQIGKFIAKGTNAVVYEATFR-----GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENL  268 (588)
Q Consensus       194 ~~~~~~~~~~IG~G~fG~Vy~a~~~-----g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l  268 (588)
                      ..++|++.+.||+|+||+||+|.+.     ...||||.++....   .             .....+.+|+.+++.+   
T Consensus         2 ~~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~---~-------------~~~~~~~~e~~~l~~l---   62 (266)
T cd05033           2 DPSYVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSS---D-------------KQRLDFLTEASIMGQF---   62 (266)
T ss_pred             ChHHceeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCCC---h-------------HHHHHHHHHHHHHHhC---
Confidence            3478999999999999999999985     34799999853211   0             0223456788888887   


Q ss_pred             CCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHH
Q psy4039         269 PPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFT  347 (588)
Q Consensus       269 ~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~  347 (588)
                       +||||+++++++.+..                            ..+++|||+ +++|.+++......+++.++..++.
T Consensus        63 -~h~~i~~~~~~~~~~~----------------------------~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~  113 (266)
T cd05033          63 -DHPNIIRLEGVVTKSR----------------------------PVMIITEYMENGSLDKFLRENDGKFTVGQLVGMLR  113 (266)
T ss_pred             -CCCCcceEeEEEecCC----------------------------ceEEEEEcCCCCCHHHHHHhccCCCCHHHHHHHHH
Confidence             8999999999886532                            389999999 5799999987655899999999999


Q ss_pred             HHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCC
Q psy4039         348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG  427 (588)
Q Consensus       348 ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~  427 (588)
                      |++.||.|||+++|+||||||+|||++++     +.++|+|||+++........ ...  ....+++.|+|||.+.+.. 
T Consensus       114 ~l~~~l~~Lh~~~i~H~di~p~nili~~~-----~~~~l~dfg~~~~~~~~~~~-~~~--~~~~~~~~y~~Pe~~~~~~-  184 (266)
T cd05033         114 GIASGMKYLSEMNYVHRDLAARNILVNSN-----LVCKVSDFGLSRRLEDSEAT-YTT--KGGKIPIRWTAPEAIAYRK-  184 (266)
T ss_pred             HHHHHHHHHHhCCcccCCCCcceEEEcCC-----CCEEECccchhhcccccccc-eec--cCCCCCccccChhhhccCC-
Confidence            99999999999999999999999999987     78999999999876521111 111  1233567899999987654 


Q ss_pred             CccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHH
Q psy4039         428 LFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAA  503 (588)
Q Consensus       428 ~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l  503 (588)
                           .+.++||||||+++|||++ |..||........   .......+.+..+|+.+.+++.+||+.+|++||++++++
T Consensus       185 -----~~~~~Dv~slG~~l~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~ei~  259 (266)
T cd05033         185 -----FTSASDVWSFGIVMWEVMSYGERPYWDMSNQDVIKAVEDGYRLPPPMDCPSALYQLMLDCWQKDRNERPTFSQIV  259 (266)
T ss_pred             -----CccccchHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHH
Confidence                 4578999999999999998 9999965322111   111122234567899999999999999999999999999


Q ss_pred             HHHhh
Q psy4039         504 TVCQL  508 (588)
Q Consensus       504 ~~L~~  508 (588)
                      +.|+.
T Consensus       260 ~~l~~  264 (266)
T cd05033         260 STLDK  264 (266)
T ss_pred             HHHHh
Confidence            98764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=100.00  E-value=1.9e-38  Score=325.01  Aligned_cols=251  Identities=23%  Similarity=0.312  Sum_probs=195.9

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      +++|++.+.||+|+||.||+|..+  ++.||||.+......                .....+.+|+.+++.+    +||
T Consensus         4 ~~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~----------------~~~~~~~~E~~~l~~l----~h~   63 (291)
T cd07844           4 LETYKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEE----------------GAPFTAIREASLLKDL----KHA   63 (291)
T ss_pred             ccceeEEEEEeecCCeEEEEEEEcCCCcEEEEEEEeccccc----------------CCchhHHHHHHHHhhC----CCc
Confidence            488999999999999999999986  789999998532111                0112345699999987    999


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      ||+++++++.+..                            ..++||||+.++|.+++......+++..+..++.|+++|
T Consensus        64 ~i~~~~~~~~~~~----------------------------~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~~~ql~~a  115 (291)
T cd07844          64 NIVTLHDIIHTKK----------------------------TLTLVFEYLDTDLKQYMDDCGGGLSMHNVRLFLFQLLRG  115 (291)
T ss_pred             ceeeEEEEEecCC----------------------------eEEEEEecCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence            9999999987632                            489999999889999998765578999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||+++|+||||||+||+++.+     +.+||+|||+++........     .....++..|+|||++.+...     
T Consensus       116 l~~lH~~~i~H~dl~p~nil~~~~-----~~~kl~dfg~~~~~~~~~~~-----~~~~~~~~~~~aPE~~~~~~~-----  180 (291)
T cd07844         116 LAYCHQRRVLHRDLKPQNLLISER-----GELKLADFGLARAKSVPSKT-----YSNEVVTLWYRPPDVLLGSTE-----  180 (291)
T ss_pred             HHHHHhCCeecccCCHHHEEEcCC-----CCEEECccccccccCCCCcc-----ccccccccccCCcHHhhcCcc-----
Confidence            999999999999999999999987     78999999998754321110     012346889999999865321     


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCccccccc----------------cc---------ccccc-----C---CCCCCcc-
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNT----------------DY---------EVNAL-----P---QLNTNVP-  478 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~----------------~~---------~~~~~-----~---~~~~~~~-  478 (588)
                      ++.++||||+||++|||++|+.||.......                .+         .....     .   .....++ 
T Consensus       181 ~~~~~Dv~slG~il~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (291)
T cd07844         181 YSTSLDMWGVGCIFYEMATGRPLFPGSTDVEDQLHKIFRVLGTPTEETWPGVSSNPEFKPYSFPFYPPRPLINHAPRLDR  260 (291)
T ss_pred             cCcHHHHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHhcCCCChhhhhhhhhccccccccccccCChhHHHhCcCCCC
Confidence            3468999999999999999999996432000                00         00000     0   0011233 


Q ss_pred             -HHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccc
Q psy4039         479 -EVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWL  517 (588)
Q Consensus       479 -~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~  517 (588)
                       .++.+++.+||+.||++|||++++++         ||||
T Consensus       261 ~~~~~~li~~~L~~~p~~Rps~~e~l~---------~~~f  291 (291)
T cd07844         261 IPHGEELALKFLQYEPKKRISAAEAMK---------HPYF  291 (291)
T ss_pred             chhHHHHHHHHhccCcccccCHHHHhc---------CCCC
Confidence             78899999999999999999999999         9996

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=100.00  E-value=1.9e-38  Score=318.96  Aligned_cols=248  Identities=22%  Similarity=0.260  Sum_probs=199.1

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCC
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPP  270 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~  270 (588)
                      |.+..++|++.+.||+|+||.||++...+..||+|.+....                   ..+.+.+|+.+++.+    +
T Consensus         1 ~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~k~~~~~~-------------------~~~~~~~e~~~l~~l----~   57 (256)
T cd05082           1 WALNMKELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIKNDA-------------------TAQAFLAEASVMTQL----R   57 (256)
T ss_pred             CCccHHhCeeeeeecccCCCeEEEEEEcCCcEEEEEeCCCc-------------------hHHHHHHHHHHHHhC----C
Confidence            45667899999999999999999999999999999984211                   123456788888887    8


Q ss_pred             CCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc-CCCCHHHHHHHHHH
Q psy4039         271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC-AQLSMHERVLLFTQ  348 (588)
Q Consensus       271 HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~-~~l~~~~~~~i~~q  348 (588)
                      |+||+++++++....                           ...+++|||+ +++|.+++.... ..+++..+..++.|
T Consensus        58 ~~~i~~~~~~~~~~~---------------------------~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~  110 (256)
T cd05082          58 HSNLVQLLGVIVEEK---------------------------GGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLD  110 (256)
T ss_pred             CCCeeeEEEEEEcCC---------------------------CceEEEEECCCCCcHHHHHHhcCCCCCCHHHHHHHHHH
Confidence            999999998765421                           1389999999 579999998753 34899999999999


Q ss_pred             HHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCC
Q psy4039         349 LLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGL  428 (588)
Q Consensus       349 l~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~  428 (588)
                      ++.||+|||++||+||||||+||+++.+     +.+||+|||+++.......        ...++..|+|||++.+..  
T Consensus       111 i~~~l~~lH~~~i~H~dlkp~nil~~~~-----~~~kl~dfg~~~~~~~~~~--------~~~~~~~y~aPE~~~~~~--  175 (256)
T cd05082         111 VCEAMEYLEANNFVHRDLAARNVLVSED-----NVAKVSDFGLTKEASSTQD--------TGKLPVKWTAPEALREKK--  175 (256)
T ss_pred             HHHHHHHHHhCCEeccccchheEEEcCC-----CcEEecCCccceeccccCC--------CCccceeecCHHHHccCC--
Confidence            9999999999999999999999999987     7899999999876433111        233567899999986654  


Q ss_pred             ccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHH
Q psy4039         429 FSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAAT  504 (588)
Q Consensus       429 ~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~  504 (588)
                          .+.++|||||||++|||++ |+.||........   ......+..+..+|+.+.+++.+||+.||++|||++++++
T Consensus       176 ----~~~~~Dv~slG~i~~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~  251 (256)
T cd05082         176 ----FSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDGCPPVVYDVMKQCWHLDAATRPSFLQLRE  251 (256)
T ss_pred             ----CCchhhhHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHH
Confidence                4568999999999999997 9999865322111   1112233455678999999999999999999999999988


Q ss_pred             HHh
Q psy4039         505 VCQ  507 (588)
Q Consensus       505 ~L~  507 (588)
                      .|+
T Consensus       252 ~l~  254 (256)
T cd05082         252 QLE  254 (256)
T ss_pred             HHh
Confidence            665

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=100.00  E-value=1.4e-38  Score=324.58  Aligned_cols=252  Identities=21%  Similarity=0.260  Sum_probs=197.1

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||.||+|.+.  +..||||++......                .....+.+|+.+++.+    +|||
T Consensus         1 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~----------------~~~~~~~~E~~~l~~l----~h~~   60 (279)
T cd06619           1 QDIQYQEILGHGNGGTVYKAYHLLTRRILAVKVIPLDITV----------------ELQKQIMSELEILYKC----DSPY   60 (279)
T ss_pred             CcchheeeeccCCCeEEEEEEEcCCCcEEEEEEEecCCCh----------------HHHHHHHHHHHHHHhC----CCCC
Confidence            46788899999999999999985  789999998532100                0123466788888887    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++++.+..                            ..+++|||+ +++|..+.     .+++..+..++.|++.|
T Consensus        61 iv~~~~~~~~~~----------------------------~~~lv~e~~~~~~l~~~~-----~~~~~~~~~~~~qi~~~  107 (279)
T cd06619          61 IIGFYGAFFVEN----------------------------RISICTEFMDGGSLDVYR-----KIPEHVLGRIAVAVVKG  107 (279)
T ss_pred             eeeEEEEEEECC----------------------------EEEEEEecCCCCChHHhh-----cCCHHHHHHHHHHHHHH
Confidence            999999988732                            488999999 56776542     67899999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||+.||+|+||||+|||++.+     +.++|+|||++.......       .....||..|+|||++.+..      
T Consensus       108 l~~lH~~~i~H~dlkp~Nill~~~-----~~~~l~dfg~~~~~~~~~-------~~~~~~~~~y~aPE~~~~~~------  169 (279)
T cd06619         108 LTYLWSLKILHRDVKPSNMLVNTR-----GQVKLCDFGVSTQLVNSI-------AKTYVGTNAYMAPERISGEQ------  169 (279)
T ss_pred             HHHHHHCCEeeCCCCHHHEEECCC-----CCEEEeeCCcceeccccc-------ccCCCCChhhcCceeecCCC------
Confidence            999999999999999999999987     899999999997654321       11457899999999987654      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcccccccc-------cc---ccccCCC-CCCccHHHHHHHHHhhhhCCCCCCCHHH
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD-------YE---VNALPQL-NTNVPEVMRRLVAKLLENDPSDRPSAEL  501 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~-------~~---~~~~~~~-~~~~~~~l~~Li~~~L~~dP~~Rps~~e  501 (588)
                      .+.++|||||||++|+|++|..||........       ..   ....+.. ....++++++++.+||+.||++||++++
T Consensus       170 ~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~e  249 (279)
T cd06619         170 YGIHSDVWSLGISFMELALGRFPYPQIQKNQGSLMPLQLLQCIVDEDPPVLPVGQFSEKFVHFITQCMRKQPKERPAPEN  249 (279)
T ss_pred             CCCcchHHHHHHHHHHHHhCCCCchhhcccccccchHHHHHHHhccCCCCCCCCcCCHHHHHHHHHHhhCChhhCCCHHH
Confidence            45789999999999999999999965221110       00   0111111 2347789999999999999999999999


Q ss_pred             HHHHHhhhhhcCCccccCCCCChhHH
Q psy4039         502 AATVCQLYLWAPKHWLYGATPSHNEI  527 (588)
Q Consensus       502 ~l~~L~~~~~~~h~w~~~~~~~~~~~  527 (588)
                      +++         |||+........++
T Consensus       250 il~---------~~~~~~~~~~~~~~  266 (279)
T cd06619         250 LMD---------HPFIVQYNDGNAEV  266 (279)
T ss_pred             Hhc---------CcccccccCccHHH
Confidence            999         99998554443333

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=100.00  E-value=2.8e-38  Score=317.14  Aligned_cols=250  Identities=24%  Similarity=0.348  Sum_probs=199.6

Q ss_pred             CeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCce
Q psy4039         197 DIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNV  274 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNI  274 (588)
                      +|++.+.||+|++|.||++.+.  ++.||||.+.......               ...+.+.+|+.+++.+    +||||
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~---------------~~~~~~~~e~~~l~~l----~~~~i   61 (257)
T cd08223           1 AYCFVRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASR---------------RERKAAEQEAQLLSQL----KHPNI   61 (257)
T ss_pred             CceEEEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcCH---------------HHHHHHHHHHHHHHhC----CCCCe
Confidence            5899999999999999999986  6789999985322110               0123355688888887    89999


Q ss_pred             EEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh-cCCCCHHHHHHHHHHHHHH
Q psy4039         275 VVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER-CAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       275 V~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~-~~~l~~~~~~~i~~ql~~g  352 (588)
                      +++++.+...                           ...++++|||+ +++|.+++... ...+++.++..++.|++.|
T Consensus        62 ~~~~~~~~~~---------------------------~~~~~lv~e~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~l~~~  114 (257)
T cd08223          62 VAYRESWEGE---------------------------DGLLYIVMGFCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMA  114 (257)
T ss_pred             eeeeeeecCC---------------------------CCEEEEEecccCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence            9998876532                           12489999999 57999999874 3468999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |+|||++||+||||||+||+++.+     +.++|+|||++........     ......|++.|+|||++.+..      
T Consensus       115 l~~lH~~~i~H~di~p~nil~~~~-----~~~~l~df~~~~~~~~~~~-----~~~~~~~~~~y~aPE~~~~~~------  178 (257)
T cd08223         115 LQYLHEKHILHRDLKTQNVFLTRT-----NIIKVGDLGIARVLENQCD-----MASTLIGTPYYMSPELFSNKP------  178 (257)
T ss_pred             HHHHHhCCeeccCCCchhEEEecC-----CcEEEecccceEEecccCC-----ccccccCCcCccChhHhcCCC------
Confidence            999999999999999999999887     7899999999987543211     112456899999999987654      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhh
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLY  509 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~  509 (588)
                      .+.++|||||||++|+|++|+.||........   ......+..+..+++++.+++.+||+.||++||++.++++     
T Consensus       179 ~~~~~Dv~slG~il~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~-----  253 (257)
T cd08223         179 YNYKSDVWALGCCVYEMATLKHAFNAKDMNSLVYRIIEGKLPPMPKDYSPELGELIATMLSKRPEKRPSVKSILR-----  253 (257)
T ss_pred             CCchhhhHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhcCCCCCccccCHHHHHHHHHHhccCcccCCCHHHHhc-----
Confidence            45789999999999999999999975322111   1122334456678899999999999999999999999999     


Q ss_pred             hhcCCccc
Q psy4039         510 LWAPKHWL  517 (588)
Q Consensus       510 ~~~~h~w~  517 (588)
                          |||+
T Consensus       254 ----~~~~  257 (257)
T cd08223         254 ----QPYI  257 (257)
T ss_pred             ----CCCC
Confidence                9996

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=100.00  E-value=1.5e-38  Score=325.77  Aligned_cols=251  Identities=23%  Similarity=0.308  Sum_probs=198.7

Q ss_pred             eEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceE
Q psy4039         198 IQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVV  275 (588)
Q Consensus       198 ~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV  275 (588)
                      |+..+.||+|+||+||+|.+.  ++.||+|.+........              .....+.+|+.+++.+    +|+||+
T Consensus         2 ~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~--------------~~~~~~~~E~~il~~l----~~~~i~   63 (285)
T cd05632           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKR--------------KGESMALNEKQILEKV----NSQFVV   63 (285)
T ss_pred             ceEEEEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhhh--------------hHHHHHHHHHHHHHHc----CCcCce
Confidence            677889999999999999996  78999999853211100              0123356689999887    999999


Q ss_pred             EEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc-CCCCHHHHHHHHHHHHHHH
Q psy4039         276 VMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC-AQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       276 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~-~~l~~~~~~~i~~ql~~gL  353 (588)
                      ++++++.+..                            ..+++|||+ +++|.+++.... ..+++..+..++.|++.||
T Consensus        64 ~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ql~~~l  115 (285)
T cd05632          64 NLAYAYETKD----------------------------ALCLVLTIMNGGDLKFHIYNMGNPGFEEERALFYAAEILCGL  115 (285)
T ss_pred             eEEEEEecCC----------------------------EEEEEEEeccCccHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence            9998887632                            489999999 579998887643 3699999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN  433 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~  433 (588)
                      .|||++||+||||||+||+++++     +.++|+|||++........      .....||+.|+|||++.+..      +
T Consensus       116 ~~lH~~~iiH~dikp~Nili~~~-----~~~kl~Dfg~~~~~~~~~~------~~~~~g~~~~~aPE~~~~~~------~  178 (285)
T cd05632         116 EDLHRENTVYRDLKPENILLDDY-----GHIRISDLGLAVKIPEGES------IRGRVGTVGYMAPEVLNNQR------Y  178 (285)
T ss_pred             HHHHhCCeeecCCCHHHEEECCC-----CCEEEecCCcceecCCCCc------ccCCCCCcCccChHHhcCCC------C
Confidence            99999999999999999999987     7899999999876533211      11356899999999997654      4


Q ss_pred             CCcCchhhHHHHHHHHhcCCCCCcccccccc---c---cccccCCCCCCccHHHHHHHHHhhhhCCCCCCC-----HHHH
Q psy4039         434 YSKSDAWTAGTVAYEIFGHDNPFYQSARNTD---Y---EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS-----AELA  502 (588)
Q Consensus       434 ~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~---~---~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps-----~~e~  502 (588)
                      +.++|||||||++|||++|..||........   .   ........+..+++++.+|+.+||+.||++||+     ++++
T Consensus       179 ~~~~Di~slG~~l~~l~~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~l  258 (285)
T cd05632         179 TLSPDYWGLGCLIYEMIEGQSPFRGRKEKVKREEVDRRVLETEEVYSAKFSEEAKSICKMLLTKDPKQRLGCQEEGAGEV  258 (285)
T ss_pred             CcccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhhhccccccCccCCHHHHHHHHHHccCCHhHcCCCcccChHHH
Confidence            5789999999999999999999976322110   0   011122345678899999999999999999999     7888


Q ss_pred             HHHHhhhhhcCCccccCC
Q psy4039         503 ATVCQLYLWAPKHWLYGA  520 (588)
Q Consensus       503 l~~L~~~~~~~h~w~~~~  520 (588)
                      ++         |+|+...
T Consensus       259 ~~---------~~~~~~~  267 (285)
T cd05632         259 KR---------HPFFRNM  267 (285)
T ss_pred             Hc---------ChhhhcC
Confidence            88         9999754

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>KOG0586|consensus

Probab=100.00  E-value=5.4e-39  Score=340.71  Aligned_cols=258  Identities=26%  Similarity=0.319  Sum_probs=215.9

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCC
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENL  268 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l  268 (588)
                      .......|.+.+.||+|.|++|..|++.  +..||||.+.+......               ..+.+-+|+++|..+   
T Consensus        51 ~~~~vg~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~---------------~~~k~~rev~imk~l---  112 (596)
T KOG0586|consen   51 DSNSVGLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPS---------------KRQKLGREVDIMKSL---  112 (596)
T ss_pred             ccccccceeeeeeeccceeEEEEeeEecCCCceEEEEEehhcccChH---------------HHHHHHHHHHHHHhc---
Confidence            3445588999999999999999999997  89999999965332211               122256799999987   


Q ss_pred             CCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHH
Q psy4039         269 PPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFT  347 (588)
Q Consensus       269 ~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~  347 (588)
                       +|||||+++.+...+.                            .+|+||||+ +|.+++||...+ ...+..+..++.
T Consensus       113 -~HPnIvkl~~v~~t~~----------------------------~lylV~eya~~ge~~~yl~~~g-r~~e~~ar~~F~  162 (596)
T KOG0586|consen  113 -NHPNIVKLFSVIETEA----------------------------TLYLVMEYASGGELFDYLVKHG-RMKEKEARAKFR  162 (596)
T ss_pred             -CCcceeeeeeeeeecc----------------------------eeEEEEEeccCchhHHHHHhcc-cchhhhhhhhhH
Confidence             9999999999988643                            499999999 799999999876 777799999999


Q ss_pred             HHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCC
Q psy4039         348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG  427 (588)
Q Consensus       348 ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~  427 (588)
                      |+.+|++|||+++|||||||++||||+.+     .++||+|||++..+..+....      +.||++.|.|||++.+..+
T Consensus       163 q~vsaveYcH~k~ivHrdLk~eNilL~~~-----mnikIaDfgfS~~~~~~~~lq------t~cgsppyAaPEl~~g~~y  231 (596)
T KOG0586|consen  163 QIVSAVEYCHSKNIVHRDLKAENILLDEN-----MNIKIADFGFSTFFDYGLMLQ------TFCGSPPYAAPELFNGKKY  231 (596)
T ss_pred             HHHHHHHHHhhcceeccccchhhcccccc-----cceeeeccccceeeccccccc------ccCCCCCccChHhhcCccc
Confidence            99999999999999999999999999998     789999999998877544332      6789999999999998874


Q ss_pred             CccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccccc--ccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHH
Q psy4039         428 LFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATV  505 (588)
Q Consensus       428 ~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~--~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~  505 (588)
                           .++.+|+||+|+++|-|++|..||.+......-.  ......++..++.++.+||+++|..+|.+|++++++.. 
T Consensus       232 -----~gpe~D~Wslgvvly~LV~GsLPFDG~~lk~Lr~rvl~gk~rIp~~ms~dce~lLrk~lvl~Pskr~~~dqim~-  305 (596)
T KOG0586|consen  232 -----DGPEVDIWSLGVVLYALVEGSLPFDGQNLKELRPRVLRGKYRIPFYMSCDCEDLLRKFLVLNPSKRGPCDQIMK-  305 (596)
T ss_pred             -----CCcceehhhhhhhheeeeecccccCCcccccccchheeeeecccceeechhHHHHHHhhccCccccCCHHHhhh-
Confidence                 5688999999999999999999999853322211  12233466778899999999999999999999999999 


Q ss_pred             HhhhhhcCCccccCCC
Q psy4039         506 CQLYLWAPKHWLYGAT  521 (588)
Q Consensus       506 L~~~~~~~h~w~~~~~  521 (588)
                              |.|+....
T Consensus       306 --------~~W~n~~~  313 (596)
T KOG0586|consen  306 --------DRWRNDLL  313 (596)
T ss_pred             --------hcccchhh
Confidence                    99987443

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=100.00  E-value=2.4e-39  Score=324.82  Aligned_cols=247  Identities=30%  Similarity=0.430  Sum_probs=193.9

Q ss_pred             eEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceE
Q psy4039         198 IQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVV  275 (588)
Q Consensus       198 ~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV  275 (588)
                      |++++.||+|+||+||++...  ++.||+|++........               ......+|+.+++.+    +||||+
T Consensus         1 y~~~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~~---------------~~~~~~~e~~~~~~l----~~~~i~   61 (260)
T PF00069_consen    1 YRLVKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEEE---------------EREENIREIKILRRL----RHPNIV   61 (260)
T ss_dssp             EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHHH---------------HHHHHHHHHHHHHHH----TBTTBC
T ss_pred             CEEeEEEEeCCCEEEEEEEECCCCeEEEEEEecccccccc---------------ccchhhhhhhccccc----cccccc
Confidence            788999999999999999998  66899999964321111               111123388899988    899999


Q ss_pred             EEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCC-cHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy4039         276 VMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNT-DLRNYLRERCAQLSMHERVLLFTQLLEGVT  354 (588)
Q Consensus       276 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~g-sL~~~L~~~~~~l~~~~~~~i~~ql~~gL~  354 (588)
                      ++++++.+..                            ..+++||++.+ +|.+++.... .+++.++..++.|+++||.
T Consensus        62 ~~~~~~~~~~----------------------------~~~~v~~~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~L~  112 (260)
T PF00069_consen   62 QILDVFQDDN----------------------------YLYIVMEYCPGGSLQDYLQKNK-PLSEEEILKIAYQILEALA  112 (260)
T ss_dssp             HEEEEEEESS----------------------------EEEEEEEEETTEBHHHHHHHHS-SBBHHHHHHHHHHHHHHHH
T ss_pred             cccccccccc----------------------------cccccccccccccccccccccc-ccccccccccccccccccc
Confidence            9999988732                            48999999965 9999998443 8999999999999999999


Q ss_pred             HHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHh-cCCCCccCCC
Q psy4039         355 HLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVAL-ATPGLFSFVN  433 (588)
Q Consensus       355 yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~-~~~~~~~~~~  433 (588)
                      |||+++|+||||||+||+++.+     +.++|+|||.+.......     .......||..|+|||++. +..      .
T Consensus       113 ~Lh~~~i~H~dikp~NIl~~~~-----~~~~l~Dfg~~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~------~  176 (260)
T PF00069_consen  113 YLHSKGIVHRDIKPENILLDEN-----GEVKLIDFGSSVKLSENN-----ENFNPFVGTPEYMAPEVLQQGKK------Y  176 (260)
T ss_dssp             HHHHTTEEESSBSGGGEEESTT-----SEEEESSGTTTEESTSTT-----SEBSSSSSSGGGSCHHHHTTTSS------B
T ss_pred             cccccccccccccccccccccc-----cccccccccccccccccc-----ccccccccccccccccccccccc------c
Confidence            9999999999999999999977     789999999997641111     1112456899999999987 332      4


Q ss_pred             CCcCchhhHHHHHHHHhcCCCCCcccc---ccccccc------cccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHH
Q psy4039         434 YSKSDAWTAGTVAYEIFGHDNPFYQSA---RNTDYEV------NALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAAT  504 (588)
Q Consensus       434 ~~ksDVwS~Gvil~ElltG~~Pf~~~~---~~~~~~~------~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~  504 (588)
                      +.++||||+|+++|+|++|..||....   .......      ..........++++.+++.+||+.||++||+++++++
T Consensus       177 ~~~~Di~slG~il~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~R~~~~~l~~  256 (260)
T PF00069_consen  177 TRKSDIWSLGIILYELLTGKLPFEESNSDDQLEIIEKILKRPLPSSSQQSREKSEELRDLIKKMLSKDPEQRPSAEELLK  256 (260)
T ss_dssp             STHHHHHHHHHHHHHHHHSSSSSTTSSHHHHHHHHHHHHHTHHHHHTTSHTTSHHHHHHHHHHHSSSSGGGSTTHHHHHT
T ss_pred             cccccccccccccccccccccccccccchhhhhhhhhcccccccccccccchhHHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            578999999999999999999998741   1111110      0001111223489999999999999999999999999


Q ss_pred             HHhhhhhcCCccc
Q psy4039         505 VCQLYLWAPKHWL  517 (588)
Q Consensus       505 ~L~~~~~~~h~w~  517 (588)
                               |||+
T Consensus       257 ---------~~~~  260 (260)
T PF00069_consen  257 ---------HPWF  260 (260)
T ss_dssp             ---------SGGG
T ss_pred             ---------CCCC
Confidence                     9996

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>KOG1989|consensus

Probab=100.00  E-value=1.3e-38  Score=350.75  Aligned_cols=273  Identities=23%  Similarity=0.284  Sum_probs=204.7

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      -++++.+.|.+|||+.||.|.+.  |.+||+|++...     ++.            .-+...+||.+|+.|   ..|+|
T Consensus        37 ~~v~V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~-----de~------------~L~~v~~EI~~MK~L---~gh~n   96 (738)
T KOG1989|consen   37 HRVTVEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVN-----DEE------------ALNAVKREIDIMKLL---SGHKN   96 (738)
T ss_pred             EEEEEEEEEccCCcEEEEEEEecCCCceeeeeeeecC-----CHH------------HHHHHHHHHHHHHHh---cCCCc
Confidence            56788899999999999999997  489999999532     222            223456799999998   57999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCC-CcHHHHHHHh-cCCCCHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYN-TDLRNYLRER-CAQLSMHERVLLFTQLLE  351 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~-gsL~~~L~~~-~~~l~~~~~~~i~~ql~~  351 (588)
                      ||.+++......                    . +....-.++|+||||. |+|-+++..+ ...|++.++++|+.|+++
T Consensus        97 IV~yidss~~~~--------------------~-~~~~~~EvllLmEyC~gg~Lvd~mn~Rlq~~lte~eVLkIf~dv~~  155 (738)
T KOG1989|consen   97 IVSYIDSSAINR--------------------S-SNNGVWEVLLLMEYCKGGSLVDFMNTRLQTRLTEDEVLKIFYDVCE  155 (738)
T ss_pred             eeeEeccccccc--------------------c-CCCceeEEEeehhhccCCcHHHHHHHHHhccCChHHHHHHHHHHHH
Confidence            999998422110                    0 1111236899999995 8999999865 346999999999999999


Q ss_pred             HHHHHHhCC--ceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCc----cccccccccccCCccccchhHHhcC
Q psy4039         352 GVTHLNMHR--TAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLS----MQYSSADIELGGNVALMAPEVALAT  425 (588)
Q Consensus       352 gL~yLH~~~--IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~----~~~~~~~~~~~GT~~Y~APE~l~~~  425 (588)
                      |+++||...  |||||||-+||||..+     ++.||||||.|...-....    ..+-...+...-|+.|.|||++.-.
T Consensus       156 AVa~mH~~~pPiIHRDLKiENvLls~~-----g~~KLCDFGSatt~~~~~~~~~e~~~ve~eI~k~TTp~YRsPEMIDly  230 (738)
T KOG1989|consen  156 AVAAMHYLKPPIIHRDLKIENVLLSAD-----GNYKLCDFGSATTKILSPTSAQEVNYVEEEIEKYTTPQYRSPEMIDLY  230 (738)
T ss_pred             HHHHHhcCCCccchhhhhhhheEEcCC-----CCEEeCcccccccccCCCccHHHHHHHHHHHHhhCCccccChHHHhhh
Confidence            999999876  9999999999999988     8999999999865322110    1111122344579999999998633


Q ss_pred             CCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHH
Q psy4039         426 PGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATV  505 (588)
Q Consensus       426 ~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~  505 (588)
                      .+.   ..++|+|||||||+||-|+....||...-...........+....++..+++||+.||+.||++||++-|++..
T Consensus       231 sg~---pI~eKsDIWALGclLYkLCy~t~PFe~sg~laIlng~Y~~P~~p~ys~~l~~LI~~mL~~nP~~RPnI~Qv~~~  307 (738)
T KOG1989|consen  231 SGL---PIGEKSDIWALGCLLYKLCYFTTPFEESGKLAILNGNYSFPPFPNYSDRLKDLIRTMLQPNPDERPNIYQVLEE  307 (738)
T ss_pred             cCC---CCcchhHHHHHHHHHHHHHHhCCCcCcCcceeEEeccccCCCCccHHHHHHHHHHHHhccCcccCCCHHHHHHH
Confidence            221   15689999999999999999999998752222222211112235788999999999999999999999998887


Q ss_pred             HhhhhhcCCcccc
Q psy4039         506 CQLYLWAPKHWLY  518 (588)
Q Consensus       506 L~~~~~~~h~w~~  518 (588)
                      +..+.-. +.|+.
T Consensus       308 ~~~l~~~-~~~~~  319 (738)
T KOG1989|consen  308 IFELANK-PCPIP  319 (738)
T ss_pred             HHHHhcC-CCCcc
Confidence            6655433 44544

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=100.00  E-value=1.8e-38  Score=325.39  Aligned_cols=260  Identities=22%  Similarity=0.256  Sum_probs=202.7

Q ss_pred             ccCCeEEeeeecccCceeEEEEEEC-------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhc
Q psy4039         194 KVDDIQIGKFIAKGTNAVVYEATFR-------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVE  266 (588)
Q Consensus       194 ~~~~~~~~~~IG~G~fG~Vy~a~~~-------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~  266 (588)
                      .-++|.+.+.||+|+||.||++.+.       +..+|+|.+....   .              .....+.+|+.+++.+ 
T Consensus         3 ~~~~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~---~--------------~~~~~~~~e~~~l~~l-   64 (288)
T cd05093           3 KRHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDAS---D--------------NARKDFHREAELLTNL-   64 (288)
T ss_pred             chHHeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcC---H--------------HHHHHHHHHHHHHHhC-
Confidence            3478999999999999999999863       4569999884311   0              0223456788999887 


Q ss_pred             CCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc-----------
Q psy4039         267 NLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC-----------  334 (588)
Q Consensus       267 ~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~-----------  334 (588)
                         +||||+++++++.+..                            ..+++|||+ +++|.+++....           
T Consensus        65 ---~h~~i~~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~  113 (288)
T cd05093          65 ---QHEHIVKFYGVCVEGD----------------------------PLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNR  113 (288)
T ss_pred             ---CCCCcceEEEEEecCC----------------------------ccEEEEEcCCCCCHHHHHHHcCCccccccccCC
Confidence               8999999999987532                            389999999 589999997542           


Q ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCC
Q psy4039         335 -AQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGN  413 (588)
Q Consensus       335 -~~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT  413 (588)
                       ..+++.++..++.|++.||+|||++||+||||||+|||++++     +.+||+|||+++........   .......++
T Consensus       114 ~~~l~~~~~~~~~~ql~~aL~~lH~~~i~H~dlkp~Nili~~~-----~~~kl~dfg~~~~~~~~~~~---~~~~~~~~~  185 (288)
T cd05093         114 PAELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGEN-----LLVKIGDFGMSRDVYSTDYY---RVGGHTMLP  185 (288)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccCcceEEEccC-----CcEEeccCCccccccCCcee---ecCCCCCcc
Confidence             248999999999999999999999999999999999999987     78999999999765432111   111134467


Q ss_pred             ccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhh
Q psy4039         414 VALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLL  489 (588)
Q Consensus       414 ~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L  489 (588)
                      +.|+|||++.+..      .+.++|||||||++|||++ |..||........   ......+..+..++.++.+++.+||
T Consensus       186 ~~y~aPE~~~~~~------~~~~sDiwslG~il~~l~t~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~~l  259 (288)
T cd05093         186 IRWMPPESIMYRK------FTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIECITQGRVLQRPRTCPKEVYDLMLGCW  259 (288)
T ss_pred             ccccCHHHhccCC------CCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHc
Confidence            8999999987654      4578999999999999998 8999866322111   1112223445678899999999999


Q ss_pred             hhCCCCCCCHHHHHHHHhhhhhcCCcc
Q psy4039         490 ENDPSDRPSAELAATVCQLYLWAPKHW  516 (588)
Q Consensus       490 ~~dP~~Rps~~e~l~~L~~~~~~~h~w  516 (588)
                      +.||.+|||+.+++..|+.+.-....|
T Consensus       260 ~~~p~~Rpt~~~v~~~l~~~~~~~~~~  286 (288)
T cd05093         260 QREPHMRLNIKEIHSLLQNLAKASPVY  286 (288)
T ss_pred             cCChhhCCCHHHHHHHHHHHHHhcccc
Confidence            999999999999999888765544444

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=100.00  E-value=1.5e-38  Score=320.08  Aligned_cols=245  Identities=22%  Similarity=0.240  Sum_probs=191.9

Q ss_pred             eecccCceeEEEEEEC----CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEEe
Q psy4039         203 FIAKGTNAVVYEATFR----GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMH  278 (588)
Q Consensus       203 ~IG~G~fG~Vy~a~~~----g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l~  278 (588)
                      .||+|+||.||+|.++    +..||||++....   ...            ...+.+.+|+.+++.+    .||||++++
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~---~~~------------~~~~~~~~e~~~l~~l----~h~~i~~~~   62 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDN---NDP------------ALKDELLREANVMQQL----DNPYIVRMI   62 (257)
T ss_pred             cCCCcCCcceEEeEEecCCCceEEEEEEccCCC---CcH------------HHHHHHHHHHHHHHhC----CCCCcceEE
Confidence            5899999999999764    6889999985321   111            0223456688888887    999999999


Q ss_pred             eeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q psy4039         279 FAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLN  357 (588)
Q Consensus       279 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yLH  357 (588)
                      +++.+.                             ..++||||+ +|+|.+++.... .+++..+..++.|++.||.|||
T Consensus        63 ~~~~~~-----------------------------~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~al~~lH  112 (257)
T cd05116          63 GICEAE-----------------------------SWMLVMELAELGPLNKFLQKNK-HVTEKNITELVHQVSMGMKYLE  112 (257)
T ss_pred             EEEcCC-----------------------------CcEEEEecCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH
Confidence            987542                             278999999 579999997654 7999999999999999999999


Q ss_pred             hCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCCcC
Q psy4039         358 MHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS  437 (588)
Q Consensus       358 ~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ks  437 (588)
                      ++||+||||||+||+++.+     +.+||+|||+++.........  .......+++.|+|||.+....      .+.++
T Consensus       113 ~~~i~H~dlkp~nill~~~-----~~~kl~Dfg~~~~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~------~~~~~  179 (257)
T cd05116         113 ETNFVHRDLAARNVLLVTQ-----HYAKISDFGLSKALGADENYY--KAKTHGKWPVKWYAPECMNYYK------FSSKS  179 (257)
T ss_pred             HCCEeecccchhhEEEcCC-----CeEEECCCccccccCCCCCee--eecCCCCCCccccCHhHhccCC------cCchh
Confidence            9999999999999999987     789999999998754432211  1111234567999999986543      44689


Q ss_pred             chhhHHHHHHHHhc-CCCCCccccccc---cccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhh
Q psy4039         438 DAWTAGTVAYEIFG-HDNPFYQSARNT---DYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLY  509 (588)
Q Consensus       438 DVwS~Gvil~Ellt-G~~Pf~~~~~~~---~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~  509 (588)
                      |||||||++|||++ |..||.......   .......++.+..+|++++++|.+||+.||++||+++++...|+.+
T Consensus       180 Di~slG~~l~el~t~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~~~~~~p~~Rp~~~~i~~~l~~~  255 (257)
T cd05116         180 DVWSFGVLMWEAFSYGQKPYKGMKGNEVTQMIESGERMECPQRCPPEMYDLMKLCWTYGVDERPGFAVVELRLRNY  255 (257)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHhccCchhCcCHHHHHHHHhcc
Confidence            99999999999997 999997632211   1122233456678999999999999999999999999999888754

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=3.8e-38  Score=318.17  Aligned_cols=260  Identities=25%  Similarity=0.289  Sum_probs=202.7

Q ss_pred             CeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCce
Q psy4039         197 DIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNV  274 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNI  274 (588)
                      .|.++..||+|+||.||+|.+.  +..||+|.+............    ..    ...+.+.+|+.+++.+    +||||
T Consensus         1 ~~~~~~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~----~~----~~~~~~~~e~~~l~~l----~h~~i   68 (267)
T cd06628           1 KWIKGALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDR----KR----SMLDALAREIALLKEL----QHENI   68 (267)
T ss_pred             CccccceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHH----HH----HHHHHHHHHHHHHHhc----CCCCe
Confidence            3677889999999999999985  789999998543222111000    00    0123456789999987    99999


Q ss_pred             EEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         275 VVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       275 V~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      +++++++.+..                            ..+++|||+ +++|.+++.... .+++..+..++.|++.||
T Consensus        69 ~~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~-~l~~~~~~~~~~~l~~~l  119 (267)
T cd06628          69 VQYLGSSLDAD----------------------------HLNIFLEYVPGGSVAALLNNYG-AFEETLVRNFVRQILKGL  119 (267)
T ss_pred             eeEEEEEEeCC----------------------------ccEEEEEecCCCCHHHHHHhcc-CccHHHHHHHHHHHHHHH
Confidence            99999987632                            488999999 579999998754 789999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCcc-ccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSM-QYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~-~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      .|||++|++||||||+||+++++     +.++|+|||+++........ ..........|++.|+|||.+.+..      
T Consensus       120 ~~lH~~~ivH~di~p~nil~~~~-----~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~------  188 (267)
T cd06628         120 NYLHNRGIIHRDIKGANILVDNK-----GGIKISDFGISKKLEANSLSTKTNGARPSLQGSVFWMAPEVVKQTS------  188 (267)
T ss_pred             HHHHhcCcccccCCHHHEEEcCC-----CCEEecccCCCcccccccccCCccccccccCCCcCccChhHhccCC------
Confidence            99999999999999999999877     78999999999876532111 1111112356899999999987654      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCccccccccc---cccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhh
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY---EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLY  509 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~---~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~  509 (588)
                      .+.++||||+||++|+|++|..||........+   .....+.++..++.++.++|.+||+.||.+||+++++++     
T Consensus       189 ~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~-----  263 (267)
T cd06628         189 YTRKADIWSLGCLVVEMLTGKHPFPDCTQLQAIFKIGENASPEIPSNISSEAIDFLEKTFEIDHNKRPTAAELLK-----  263 (267)
T ss_pred             CCchhhhHHHHHHHHHHhhCCCCCCCccHHHHHHHHhccCCCcCCcccCHHHHHHHHHHccCCchhCcCHHHHhh-----
Confidence            346799999999999999999999764222111   123345566788999999999999999999999999999     


Q ss_pred             hhcCCccc
Q psy4039         510 LWAPKHWL  517 (588)
Q Consensus       510 ~~~~h~w~  517 (588)
                          |||+
T Consensus       264 ----~~~~  267 (267)
T cd06628         264 ----HPFL  267 (267)
T ss_pred             ----CCCC
Confidence                9996

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=100.00  E-value=3.2e-38  Score=325.24  Aligned_cols=251  Identities=25%  Similarity=0.318  Sum_probs=201.2

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      .+|++.+.||+|+||.||+|.+.  +..||+|.+......                 ....+.+|+.+++.+    .|||
T Consensus        20 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~-----------------~~~~~~~e~~~l~~~----~h~~   78 (296)
T cd06654          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQP-----------------KKELIINEILVMREN----KNPN   78 (296)
T ss_pred             cceeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecCCcc-----------------hHHHHHHHHHHHHhC----CCCC
Confidence            78999999999999999999875  789999998532211                 123456688888876    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++.+.+..                            ..++||||+ +++|.+++...  .+++.++..++.|++.|
T Consensus        79 v~~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~i~~ql~~a  128 (296)
T cd06654          79 IVNYLDSYLVGD----------------------------ELWVVMEYLAGGSLTDVVTET--CMDEGQIAAVCRECLQA  128 (296)
T ss_pred             EeeEEEEEEeCC----------------------------EEEEeecccCCCCHHHHHHhc--CCCHHHHHHHHHHHHHH
Confidence            999999887631                            489999999 68999998764  78999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||+.||+||||||+|||++.+     +.++|+|||++........     ......|++.|+|||.+.+..      
T Consensus       129 L~~LH~~gi~H~dLkp~Nill~~~-----~~~kl~dfg~~~~~~~~~~-----~~~~~~~~~~y~aPE~~~~~~------  192 (296)
T cd06654         129 LEFLHSNQVIHRDIKSDNILLGMD-----GSVKLTDFGFCAQITPEQS-----KRSTMVGTPYWMAPEVVTRKA------  192 (296)
T ss_pred             HHHHHHCCcccCCCCHHHEEEcCC-----CCEEECccccchhcccccc-----ccCcccCCccccCHHHHcCCC------
Confidence            999999999999999999999887     7899999999876433211     111346899999999987654      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcccccccccc---ccc--cCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHh
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE---VNA--LPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~---~~~--~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~  507 (588)
                      .+.++|||||||++|+|++|+.||..........   ...  ....+..++..+.+++.+||..||++||+++++++   
T Consensus       193 ~~~~~Dv~s~Gvil~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~eil~---  269 (296)
T cd06654         193 YGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKRGSAKELLQ---  269 (296)
T ss_pred             CCccchHHHHHHHHHHHHhCCCCCCCCCHHHhHHHHhcCCCCCCCCccccCHHHHHHHHHHCcCCcccCcCHHHHhh---
Confidence            4578999999999999999999997643211110   011  11234567889999999999999999999999999   


Q ss_pred             hhhhcCCccccCCCC
Q psy4039         508 LYLWAPKHWLYGATP  522 (588)
Q Consensus       508 ~~~~~~h~w~~~~~~  522 (588)
                            |||+....+
T Consensus       270 ------~~~~~~~~~  278 (296)
T cd06654         270 ------HQFLKIAKP  278 (296)
T ss_pred             ------ChhhhccCC
Confidence                  999974433

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=1.9e-38  Score=362.92  Aligned_cols=265  Identities=23%  Similarity=0.287  Sum_probs=203.0

Q ss_pred             ccccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcC
Q psy4039         190 VDDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVEN  267 (588)
Q Consensus       190 ~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~  267 (588)
                      ..+..+++|.+.+.||+|+||+||+|.+.  +..||+|.+........               ....+..|+.+++.+  
T Consensus         7 ~ge~~l~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~---------------~~~~~~~EI~IL~~L--   69 (1021)
T PTZ00266          7 DGESRLNEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKER---------------EKSQLVIEVNVMREL--   69 (1021)
T ss_pred             CCccccCCEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEeccccCHH---------------HHHHHHHHHHHHHHc--
Confidence            34455689999999999999999999997  67899999853221110               123456799999998  


Q ss_pred             CCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh---cCCCCHHHHH
Q psy4039         268 LPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER---CAQLSMHERV  343 (588)
Q Consensus       268 l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~---~~~l~~~~~~  343 (588)
                        +|||||+++++|.+..                          +..+|+||||+ +|+|.++|...   ...+++..++
T Consensus        70 --~HPNIVrl~d~f~de~--------------------------~~~lyIVMEY~~gGSL~~lL~k~~~~~g~L~E~~Il  121 (1021)
T PTZ00266         70 --KHKNIVRYIDRFLNKA--------------------------NQKLYILMEFCDAGDLSRNIQKCYKMFGKIEEHAIV  121 (1021)
T ss_pred             --CCCCcCeEEEEEEecC--------------------------CCEEEEEEeCCCCCcHHHHHHHHhhccCCCCHHHHH
Confidence              9999999999886532                          22589999999 58999999763   2479999999


Q ss_pred             HHHHHHHHHHHHHHhC-------CceeccCCCCcEEEcCCCC------------CCCCceeeeccccccccCCCCccccc
Q psy4039         344 LLFTQLLEGVTHLNMH-------RTAHRDLKSDNILLDCSED------------NTCPQLVITDFGSSYTNKSGLSMQYS  404 (588)
Q Consensus       344 ~i~~ql~~gL~yLH~~-------~IvHrDLKp~NILld~~~~------------~~~~~vkL~DFGla~~~~~~~~~~~~  404 (588)
                      .|+.||+.||.|||+.       +||||||||+||||+.+..            +....+||+|||+++.......    
T Consensus       122 ~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~~~lg~i~~~~~n~ng~~iVKLsDFGlAr~l~~~s~----  197 (1021)
T PTZ00266        122 DITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGKITAQANNLNGRPIAKIGDFGLSKNIGIESM----  197 (1021)
T ss_pred             HHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeecCccccccccccccccCCCCceEEccCCcccccccccc----
Confidence            9999999999999984       5999999999999975311            1125689999999976543211    


Q ss_pred             cccccccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccccc--ccccCCCC-CCccHHH
Q psy4039         405 SADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLN-TNVPEVM  481 (588)
Q Consensus       405 ~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~--~~~~~~~~-~~~~~~l  481 (588)
                        .....||+.|+|||++.+....    ++.++||||||||+|||++|..||..........  ....+.++ ...+.++
T Consensus       198 --~~s~vGTp~YmAPEvL~ge~~~----~s~KSDVWSLG~ILYELLTGk~PF~~~~~~~qli~~lk~~p~lpi~~~S~eL  271 (1021)
T PTZ00266        198 --AHSCVGTPYYWSPELLLHETKS----YDDKSDMWALGCIIYELCSGKTPFHKANNFSQLISELKRGPDLPIKGKSKEL  271 (1021)
T ss_pred             --ccccCCCccccCHHHHhccCCC----CCchhHHHHHHHHHHHHHHCCCCCCcCCcHHHHHHHHhcCCCCCcCCCCHHH
Confidence              1245699999999999754332    4578999999999999999999997532211111  11112222 3568899


Q ss_pred             HHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCcccc
Q psy4039         482 RRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLY  518 (588)
Q Consensus       482 ~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~  518 (588)
                      .+||..||+.+|.+||++.+++.         |+|++
T Consensus       272 ~dLI~~~L~~dPeeRPSa~QlL~---------h~~ik  299 (1021)
T PTZ00266        272 NILIKNLLNLSAKERPSALQCLG---------YQIIK  299 (1021)
T ss_pred             HHHHHHHhcCChhHCcCHHHHhc---------cHHHh
Confidence            99999999999999999999988         77776

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=100.00  E-value=3.6e-38  Score=325.02  Aligned_cols=253  Identities=26%  Similarity=0.309  Sum_probs=202.8

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||.||+|...  +..||||.+......                 ..+.+.+|+.+++.+    +|||
T Consensus        19 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~-----------------~~~~~~~e~~~l~~~----~h~~   77 (297)
T cd06656          19 KKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQP-----------------KKELIINEILVMREN----KNPN   77 (297)
T ss_pred             hhceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCccc-----------------hHHHHHHHHHHHHhC----CCCC
Confidence            78999999999999999999975  889999998532111                 123356688888876    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++++....                            ..++||||+ +++|.+++...  .+++.++..++.|++.|
T Consensus        78 i~~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~l~~~  127 (297)
T cd06656          78 IVNYLDSYLVGD----------------------------ELWVVMEYLAGGSLTDVVTET--CMDEGQIAAVCRECLQA  127 (297)
T ss_pred             EeeEEEEEecCC----------------------------EEEEeecccCCCCHHHHHHhC--CCCHHHHHHHHHHHHHH
Confidence            999999987631                            489999999 68999998765  78999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||+.||+||||||+|||++.+     +.++|+|||++.........     .....|++.|+|||.+.+..      
T Consensus       128 L~~LH~~~i~H~dL~p~Nili~~~-----~~~~l~Dfg~~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~------  191 (297)
T cd06656         128 LDFLHSNQVIHRDIKSDNILLGMD-----GSVKLTDFGFCAQITPEQSK-----RSTMVGTPYWMAPEVVTRKA------  191 (297)
T ss_pred             HHHHHHCCcccCCCCHHHEEECCC-----CCEEECcCccceEccCCccC-----cCcccCCccccCHHHHcCCC------
Confidence            999999999999999999999987     78999999998765432111     11356899999999987654      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcccccccccc---cccc--CCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHh
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE---VNAL--PQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~---~~~~--~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~  507 (588)
                      .+.++|||||||++|+|++|..||..........   ....  ...+..++..+++++.+||+.||++||+++++++   
T Consensus       192 ~~~~~Di~slGvil~~l~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~---  268 (297)
T cd06656         192 YGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPERLSAVFRDFLNRCLEMDVDRRGSAKELLQ---  268 (297)
T ss_pred             CCcHHHHHHHHHHHHHHHhCCCCCCCCCcchheeeeccCCCCCCCCccccCHHHHHHHHHHccCChhhCcCHHHHhc---
Confidence            3468999999999999999999997643211111   1111  1234567889999999999999999999999999   


Q ss_pred             hhhhcCCccccCCCCCh
Q psy4039         508 LYLWAPKHWLYGATPSH  524 (588)
Q Consensus       508 ~~~~~~h~w~~~~~~~~  524 (588)
                            |||++...+..
T Consensus       269 ------~~~~~~~~~~~  279 (297)
T cd06656         269 ------HPFLKLAKPLS  279 (297)
T ss_pred             ------Cchhccccccc
Confidence                  99998555443

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=100.00  E-value=2.1e-38  Score=318.88  Aligned_cols=248  Identities=22%  Similarity=0.261  Sum_probs=195.9

Q ss_pred             ccCCeEEeeeecccCceeEEEEEEC-CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         194 KVDDIQIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       194 ~~~~~~~~~~IG~G~fG~Vy~a~~~-g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      +..+|++.+.||+|+||.||+|.+. +..+|||.+.....                  ....+.+|+.+++.+    +||
T Consensus         2 ~~~~~~~~~~lg~G~~~~v~~~~~~~~~~~~iK~~~~~~~------------------~~~~~~~e~~~l~~l----~~~   59 (256)
T cd05059           2 DPSELTFLKELGSGQFGVVHLGKWRGKIDVAIKMIREGAM------------------SEDDFIEEAKVMMKL----SHP   59 (256)
T ss_pred             ChHHcchhhhhccCCCceEEEeEecCCccEEEEEeccCCC------------------CHHHHHHHHHHHHhC----CCC
Confidence            3467899999999999999999887 45899999843211                  123456688888887    899


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLE  351 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~  351 (588)
                      ||+++++++.+..                            ..++||||+ +++|.+++......+++..+..++.|++.
T Consensus        60 ~i~~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~  111 (256)
T cd05059          60 NLVQLYGVCTKQR----------------------------PIFIVTEYMANGCLLNYLRERKGKLGTEWLLDMCSDVCE  111 (256)
T ss_pred             CEEEEEEEEcCCC----------------------------ceEEEEecCCCCCHHHHHHhcccCCCHHHHHHHHHHHHH
Confidence            9999999876531                            389999999 67999999876557899999999999999


Q ss_pred             HHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccC
Q psy4039         352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF  431 (588)
Q Consensus       352 gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~  431 (588)
                      ||.|||++||+||||||+||+++.+     +.+||+|||+++.........    .....++..|+|||++.+..     
T Consensus       112 ~l~~lH~~~i~H~dl~p~ni~i~~~-----~~~kl~dfg~~~~~~~~~~~~----~~~~~~~~~y~~Pe~~~~~~-----  177 (256)
T cd05059         112 AMEYLESNGFIHRDLAARNCLVGED-----NVVKVSDFGLARYVLDDQYTS----SQGTKFPVKWAPPEVFDYSR-----  177 (256)
T ss_pred             HHHHHHHCCcccccccHhhEEECCC-----CcEEECCcccceecccccccc----cCCCCCCccccCHHHhccCC-----
Confidence            9999999999999999999999987     789999999997654321111    11223456899999987654     


Q ss_pred             CCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHH
Q psy4039         432 VNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVC  506 (588)
Q Consensus       432 ~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L  506 (588)
                       ++.++|||||||++|||++ |..||........   .........+..+|+++.+++.+||..+|++|||++++++.|
T Consensus       178 -~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~~~l~~l  255 (256)
T cd05059         178 -FSSKSDVWSFGVLMWEVFSEGKMPYERFSNSEVVESVSAGYRLYRPKLAPTEVYTIMYSCWHEKPEDRPAFKKLLSQL  255 (256)
T ss_pred             -CCchhhHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHh
Confidence             4568999999999999998 8999865321111   111223345567899999999999999999999999998743

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>KOG4236|consensus

Probab=100.00  E-value=1.2e-39  Score=337.09  Aligned_cols=250  Identities=22%  Similarity=0.346  Sum_probs=206.2

Q ss_pred             eeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEEe
Q psy4039         201 GKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMH  278 (588)
Q Consensus       201 ~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l~  278 (588)
                      .+.||+|.||+||-|+++  |+.||||+|.+.....+               ....+.+|+.||+.+    .||.||.+-
T Consensus       569 devLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~k---------------qesqlR~EVaILq~l----~HPGiV~le  629 (888)
T KOG4236|consen  569 DEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTK---------------QESQLRNEVAILQNL----HHPGIVNLE  629 (888)
T ss_pred             HhhccCCcceeeecceecccCceeeeeeeecccCCCc---------------hHHHHHHHHHHHHhc----CCCCeeEEE
Confidence            578999999999999998  99999999976544433               234566799999998    999999998


Q ss_pred             eeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHH
Q psy4039         279 FAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYL-RERCAQLSMHERVLLFTQLLEGVTHLN  357 (588)
Q Consensus       279 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L-~~~~~~l~~~~~~~i~~ql~~gL~yLH  357 (588)
                      ..|+..+                            .+|+|||.++|+..+.| .....+|+++....++.||+.||.|||
T Consensus       630 ~M~ET~e----------------------------rvFVVMEKl~GDMLEMILSsEkgRL~er~TkFlvtQIL~ALr~LH  681 (888)
T KOG4236|consen  630 CMFETPE----------------------------RVFVVMEKLHGDMLEMILSSEKGRLPERITKFLVTQILVALRYLH  681 (888)
T ss_pred             EeecCCc----------------------------eEEEEehhhcchHHHHHHHhhcccchHHHHHHHHHHHHHHHHHhh
Confidence            8887643                            39999999998765555 444568999999999999999999999


Q ss_pred             hCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCCcC
Q psy4039         358 MHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS  437 (588)
Q Consensus       358 ~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ks  437 (588)
                      -++|+|+||||+|||+.+. ++- +.+||||||+||.+++..-      ....+|||+|+|||++..+.      ++..-
T Consensus       682 ~knIvHCDLKPENVLLas~-~~F-PQvKlCDFGfARiIgEksF------RrsVVGTPAYLaPEVLrnkG------yNrSL  747 (888)
T KOG4236|consen  682 FKNIVHCDLKPENVLLASA-SPF-PQVKLCDFGFARIIGEKSF------RRSVVGTPAYLAPEVLRNKG------YNRSL  747 (888)
T ss_pred             hcceeeccCCchheeeccC-CCC-Cceeeccccceeecchhhh------hhhhcCCccccCHHHHhhcc------ccccc
Confidence            9999999999999999876 333 7999999999999876321      12678999999999998875      34557


Q ss_pred             chhhHHHHHHHHhcCCCCCcccccccc----ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcC
Q psy4039         438 DAWTAGTVAYEIFGHDNPFYQSARNTD----YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAP  513 (588)
Q Consensus       438 DVwS~Gvil~ElltG~~Pf~~~~~~~~----~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~  513 (588)
                      |+||+|||+|--++|..||..+....+    ......+.-|..+++++.|||..+|+..=.+|.|.++.+.         
T Consensus       748 DMWSVGVIiYVsLSGTFPFNEdEdIndQIQNAaFMyPp~PW~eis~~AidlIn~LLqVkm~kRysvdk~ls---------  818 (888)
T KOG4236|consen  748 DMWSVGVIIYVSLSGTFPFNEDEDINDQIQNAAFMYPPNPWSEISPEAIDLINNLLQVKMRKRYSVDKSLS---------  818 (888)
T ss_pred             cceeeeEEEEEEecccccCCCccchhHHhhccccccCCCchhhcCHHHHHHHHHHHHHHHHHhcchHhhcc---------
Confidence            999999999999999999977422211    1122334556789999999999999999999999999998         


Q ss_pred             CccccCC
Q psy4039         514 KHWLYGA  520 (588)
Q Consensus       514 h~w~~~~  520 (588)
                      |||+++.
T Consensus       819 h~Wlq~y  825 (888)
T KOG4236|consen  819 HPWLQDY  825 (888)
T ss_pred             chhhhcc
Confidence            9999744

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=3.1e-38  Score=318.31  Aligned_cols=252  Identities=20%  Similarity=0.250  Sum_probs=200.0

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEEC-CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCC
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLP  269 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~  269 (588)
                      |++..++|++.+.||+|+||.||+|.+. +..||||.++....                  ..+.+.+|+.+++.+    
T Consensus         1 ~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~v~iK~~~~~~~------------------~~~~~~~e~~~l~~l----   58 (261)
T cd05068           1 WEIDRTSIQLLRKLGAGQFGEVWEGLWNNTTPVAVKTLKPGTM------------------DPKDFLAEAQIMKKL----   58 (261)
T ss_pred             CccchhheeeEEEecccCCccEEEEEecCCeEEEEEeeCCCcc------------------cHHHHHHHHHHHHHC----
Confidence            3556688999999999999999999986 57899999853211                  123456789999887    


Q ss_pred             CCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc-CCCCHHHHHHHHH
Q psy4039         270 PHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC-AQLSMHERVLLFT  347 (588)
Q Consensus       270 ~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~-~~l~~~~~~~i~~  347 (588)
                      +||||+++++++....                            .++++|||+ +++|.+++.... ..+++..+..++.
T Consensus        59 ~h~~i~~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~  110 (261)
T cd05068          59 RHPKLIQLYAVCTLEE----------------------------PIYIVTELMKYGSLLEYLQGGAGRALKLPQLIDMAA  110 (261)
T ss_pred             CCCCccceeEEEecCC----------------------------CeeeeeecccCCcHHHHHhccCCCCCCHHHHHHHHH
Confidence            8999999999877532                            389999999 789999998653 4689999999999


Q ss_pred             HHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCC
Q psy4039         348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG  427 (588)
Q Consensus       348 ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~  427 (588)
                      |++.||.|||++||+||||||+||+++++     +.++|+|||+++.........    .....++..|+|||++.+.. 
T Consensus       111 ~i~~~l~~lH~~~i~H~dl~p~Nil~~~~-----~~~~l~dfg~~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~-  180 (261)
T cd05068         111 QVASGMAYLEAQNYIHRDLAARNVLVGEN-----NICKVADFGLARVIKEDIYEA----REGAKFPIKWTAPEAALYNR-  180 (261)
T ss_pred             HHHHHHHHHHhCCeeeccCCcceEEEcCC-----CCEEECCcceEEEccCCcccc----cCCCcCceeccCccccccCC-
Confidence            99999999999999999999999999987     789999999998765321110    11122346899999986554 


Q ss_pred             CccCCCCCcCchhhHHHHHHHHhc-CCCCCccccccccc---cccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHH
Q psy4039         428 LFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTDY---EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAA  503 (588)
Q Consensus       428 ~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~~---~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l  503 (588)
                           .+.++|||||||++|||++ |+.||.+.......   ........+..+++.+.+++.+||+.||++||+++++.
T Consensus       181 -----~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~l~  255 (261)
T cd05068         181 -----FSIKSDVWSFGILLTEIVTYGRMPYPGMTNAEVLQQVDQGYRMPCPPGCPKELYDIMLDCWKEDPDDRPTFETLQ  255 (261)
T ss_pred             -----CCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHhhcCcccCCCHHHHH
Confidence                 4578999999999999999 99999763221111   11112234567889999999999999999999999999


Q ss_pred             HHHh
Q psy4039         504 TVCQ  507 (588)
Q Consensus       504 ~~L~  507 (588)
                      ..|+
T Consensus       256 ~~l~  259 (261)
T cd05068         256 WKLE  259 (261)
T ss_pred             HHHh
Confidence            8776

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=100.00  E-value=2.2e-38  Score=331.00  Aligned_cols=255  Identities=16%  Similarity=0.209  Sum_probs=190.7

Q ss_pred             Eeeeeccc--CceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceE
Q psy4039         200 IGKFIAKG--TNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVV  275 (588)
Q Consensus       200 ~~~~IG~G--~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV  275 (588)
                      +.++||+|  +|++||++.++  |+.||||++........               ....+.+|+.+++.+    +|||||
T Consensus         2 ~~~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~---------------~~~~~~~e~~~l~~l----~hpniv   62 (327)
T cd08227           2 LLTVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACTNE---------------MVTFLQGELHVSKLF----NHPNIV   62 (327)
T ss_pred             hhhhccccccceEEEEEEeecccCcEEEEEEechhhccHH---------------HHHHHHHHHHHHHhc----CCCCee
Confidence            46789999  78899999987  78999999853211100               123345688888876    999999


Q ss_pred             EEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh-cCCCCHHHHHHHHHHHHHHH
Q psy4039         276 VMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER-CAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       276 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~-~~~l~~~~~~~i~~ql~~gL  353 (588)
                      +++++|.+..                            ..++||||+ +|+|.+++... ...+++..+..++.|++.||
T Consensus        63 ~~~~~~~~~~----------------------------~~~lv~e~~~~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~~L  114 (327)
T cd08227          63 PYRATFIADN----------------------------ELWVVTSFMAYGSAKDLICTHFMDGMSELAIAYILQGVLKAL  114 (327)
T ss_pred             eEEEEEEECC----------------------------EEEEEEeccCCCcHHHHHHhhccCCCCHHHHHHHHHHHHHHH
Confidence            9999998632                            489999999 58999999764 33689999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCC-CCccc-cccccccccCCccccchhHHhcCCCCccC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKS-GLSMQ-YSSADIELGGNVALMAPEVALATPGLFSF  431 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~-~~~~~-~~~~~~~~~GT~~Y~APE~l~~~~~~~~~  431 (588)
                      .|||+++|+||||||+|||++.+     +.++++|||.+..... +.... .........++..|+|||++.+....   
T Consensus       115 ~~LH~~~iiH~dlkp~Nil~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~---  186 (327)
T cd08227         115 DYIHHMGYVHRSVKASHILISVD-----GKVYLSGLRSNLSMINHGQRLRVVHDFPKYSVKVLPWLSPEVLQQNLQG---  186 (327)
T ss_pred             HHHHHCCEecCCCChhhEEEecC-----CcEEEcccchhhccccccccccccccccccccceecccChHHhhcccCC---
Confidence            99999999999999999999987     7899999987654322 11110 00011123577889999999764222   


Q ss_pred             CCCCcCchhhHHHHHHHHhcCCCCCccccccccc--------c-------------------------------------
Q psy4039         432 VNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY--------E-------------------------------------  466 (588)
Q Consensus       432 ~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~--------~-------------------------------------  466 (588)
                       ++.++|||||||++|||++|+.||.........        .                                     
T Consensus       187 -~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (327)
T cd08227         187 -YDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKLNGTVPCLLDTTTIPAEELTMKPSRSGANSGLGESTTVSTPRP  265 (327)
T ss_pred             -CCchhhHHHHHHHHHHHHHCCCCCCCcchhHHHHHHhcCCccccccccchhhhhcccCCcccCCcCCCCcccccCCcCc
Confidence             457899999999999999999999642100000        0                                     


Q ss_pred             ---ccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccC
Q psy4039         467 ---VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       467 ---~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~  519 (588)
                         .....+....+++++.+++.+||+.||++|||++++++         |||++.
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~ell~---------~p~f~~  312 (327)
T cd08227         266 SNGESSSHPYNRTFSPHFHHFVEQCLQRNPDARPSASTLLN---------HSFFKQ  312 (327)
T ss_pred             cccCCcccccccccCHHHHHHHHHHHhhCchhcCCHHHHhc---------Chhhhh
Confidence               00000112345778999999999999999999999999         999974

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=100.00  E-value=2.8e-38  Score=318.46  Aligned_cols=251  Identities=20%  Similarity=0.263  Sum_probs=198.7

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEEC-CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCC
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLP  269 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~  269 (588)
                      |++..++|++.+.||+|+||.||+|.+. +..||+|.+.....                  ..+.+.+|+.+++.+    
T Consensus         1 ~~~~~~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~k~~~~~~~------------------~~~~~~~E~~~l~~l----   58 (260)
T cd05070           1 WEIPRESLQLIKKLGNGQFGEVWMGTWNGNTKVAVKTLKPGTM------------------SPESFLEEAQIMKKL----   58 (260)
T ss_pred             CCCchHHhhhhheeccccCceEEEEEecCCceeEEEEecCCCC------------------CHHHHHHHHHHHHhc----
Confidence            4566688999999999999999999886 56899999853211                  123466799999887    


Q ss_pred             CCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh-cCCCCHHHHHHHHH
Q psy4039         270 PHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER-CAQLSMHERVLLFT  347 (588)
Q Consensus       270 ~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~-~~~l~~~~~~~i~~  347 (588)
                      +||||+++++++.+.                             ..+++|||+ +++|.+++... ...+++.++..++.
T Consensus        59 ~~~~i~~~~~~~~~~-----------------------------~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~  109 (260)
T cd05070          59 RHDKLVQLYAVVSEE-----------------------------PIYIVTEYMSKGSLLDFLKDGEGRALKLPNLVDMAA  109 (260)
T ss_pred             CCCceEEEEeEECCC-----------------------------CcEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHH
Confidence            999999999876431                             278999999 57999999864 23589999999999


Q ss_pred             HHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCC
Q psy4039         348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG  427 (588)
Q Consensus       348 ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~  427 (588)
                      |++.||.|||+++|+||||||+||+++++     +.++|+|||++..........    .....++..|+|||++.+.. 
T Consensus       110 ~l~~al~~lH~~~i~H~di~p~Nili~~~-----~~~~l~dfg~~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~-  179 (260)
T cd05070         110 QVAAGMAYIERMNYIHRDLRSANILVGDG-----LVCKIADFGLARLIEDNEYTA----RQGAKFPIKWTAPEAALYGR-  179 (260)
T ss_pred             HHHHHHHHHHHCCcccCCCccceEEEeCC-----ceEEeCCceeeeeccCccccc----ccCCCCCccccChHHHhcCC-
Confidence            99999999999999999999999999987     789999999997654322110    11233567899999986554 


Q ss_pred             CccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHH
Q psy4039         428 LFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAA  503 (588)
Q Consensus       428 ~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l  503 (588)
                           .+.++|||||||++|||++ |..||.+......   ......++.+...+..+.+++.+||..||++|||++++.
T Consensus       180 -----~~~~~Di~slG~~l~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~  254 (260)
T cd05070         180 -----FTIKSDVWSFGILLTELVTKGRVPYPGMNNREVLEQVERGYRMPCPQDCPISLHELMLQCWKKDPEERPTFEYLQ  254 (260)
T ss_pred             -----CcchhhhHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHcccCcccCcCHHHHH
Confidence                 4568999999999999999 8999966322111   111223345667889999999999999999999999998


Q ss_pred             HHHh
Q psy4039         504 TVCQ  507 (588)
Q Consensus       504 ~~L~  507 (588)
                      +.|+
T Consensus       255 ~~l~  258 (260)
T cd05070         255 SFLE  258 (260)
T ss_pred             HHHh
Confidence            8765

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=100.00  E-value=2.8e-38  Score=318.72  Aligned_cols=245  Identities=21%  Similarity=0.252  Sum_probs=192.3

Q ss_pred             eecccCceeEEEEEEC----CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEEe
Q psy4039         203 FIAKGTNAVVYEATFR----GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMH  278 (588)
Q Consensus       203 ~IG~G~fG~Vy~a~~~----g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l~  278 (588)
                      .||+|+||.||+|.+.    +..||||++.....    .            ...+.+.+|+.+++.+    +||||++++
T Consensus         2 ~ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~~----~------------~~~~~~~~E~~~l~~l----~h~~ii~~~   61 (257)
T cd05115           2 ELGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENE----K------------SVRDEMMREAEIMHQL----DNPYIVRMI   61 (257)
T ss_pred             ccCCCCcccEEEEEEecCCCceeEEEEEcccccC----h------------HHHHHHHHHHHHHHhc----CCCCeEEEE
Confidence            3899999999999875    45799999843210    0            0223466789999887    999999999


Q ss_pred             eeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q psy4039         279 FAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLN  357 (588)
Q Consensus       279 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yLH  357 (588)
                      +++...                             ..++||||+ +++|.+++......+++..+..++.|++.||.|||
T Consensus        62 ~~~~~~-----------------------------~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH  112 (257)
T cd05115          62 GVCEAE-----------------------------ALMLVMEMASGGPLNKFLSGKKDEITVSNVVELMHQVSMGMKYLE  112 (257)
T ss_pred             EEEcCC-----------------------------CeEEEEEeCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            987532                             289999999 68999999876558999999999999999999999


Q ss_pred             hCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCCcC
Q psy4039         358 MHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS  437 (588)
Q Consensus       358 ~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ks  437 (588)
                      ++|++||||||+|||++.+     +.+||+|||+++..........  ......+++.|+|||++....      .+.++
T Consensus       113 ~~~i~H~dlkp~nil~~~~-----~~~kl~dfg~~~~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~------~~~~~  179 (257)
T cd05115         113 GKNFVHRDLAARNVLLVNQ-----HYAKISDFGLSKALGADDSYYK--ARSAGKWPLKWYAPECINFRK------FSSRS  179 (257)
T ss_pred             hcCeeecccchheEEEcCC-----CcEEeccCCccccccCCcccee--ccCCCCCCcccCCHHHHccCC------CCchh
Confidence            9999999999999999887     7899999999976543221110  111223467899999987654      45789


Q ss_pred             chhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhh
Q psy4039         438 DAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLY  509 (588)
Q Consensus       438 DVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~  509 (588)
                      |||||||++||+++ |..||.+......   ......+..+..+++++.+++.+||..||++||++.++.+.|+.+
T Consensus       180 Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~c~~~~~~~Rp~~~~i~~~l~~~  255 (257)
T cd05115         180 DVWSYGITMWEAFSYGQKPYKKMKGPEVMSFIEQGKRLDCPAECPPEMYALMKDCWIYKWEDRPNFAKVEERMRTY  255 (257)
T ss_pred             hHHHHHHHHHHHhcCCCCCcCcCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHhhh
Confidence            99999999999996 9999976422211   112233456677899999999999999999999999999988754

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=100.00  E-value=3.3e-38  Score=323.60  Aligned_cols=258  Identities=24%  Similarity=0.261  Sum_probs=196.9

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||.||+|.+.  ++.||||.+......               ......+.+|+.+++.+   ..|||
T Consensus         1 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~---------------~~~~~~~~~E~~~l~~l---~~~~~   62 (295)
T cd07837           1 DAYEKLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDE---------------EGIPPTALREISLLQML---SESIY   62 (295)
T ss_pred             CCceEeeEecccCCeEEEEEEECCCCcEEEEEeehhhccc---------------cCCchHHHHHHHHHHHc---cCCCC
Confidence            47899999999999999999986  789999997431100               01223456789999887   46799


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhc----CCCCHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERC----AQLSMHERVLLFTQL  349 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~----~~l~~~~~~~i~~ql  349 (588)
                      |+++++++.....                       ......|++|||+.++|.+++....    ..+++..+..++.||
T Consensus        63 i~~~~~~~~~~~~-----------------------~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~qi  119 (295)
T cd07837          63 IVRLLDVEHVEEK-----------------------NGKPSLYLVFEYLDSDLKKFMDSNGRGPGRPLPAKTIKSFMYQL  119 (295)
T ss_pred             ccceeeeEeecCC-----------------------CCCceEEEEeeccCcCHHHHHHHhcccCCCCCCHHHHHHHHHHH
Confidence            9999998876321                       1122489999999889999987542    358999999999999


Q ss_pred             HHHHHHHHhCCceeccCCCCcEEEcC-CCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCC
Q psy4039         350 LEGVTHLNMHRTAHRDLKSDNILLDC-SEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGL  428 (588)
Q Consensus       350 ~~gL~yLH~~~IvHrDLKp~NILld~-~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~  428 (588)
                      ++||.|||+++|+||||||+||+++. +     +.+||+|||+++........     .....+++.|+|||++.+... 
T Consensus       120 ~~~L~~LH~~~i~H~dl~~~nil~~~~~-----~~~kl~dfg~~~~~~~~~~~-----~~~~~~~~~~~aPE~~~~~~~-  188 (295)
T cd07837         120 LKGVAHCHKHGVMHRDLKPQNLLVDKQK-----GLLKIADLGLGRAFSIPVKS-----YTHEIVTLWYRAPEVLLGSTH-  188 (295)
T ss_pred             HHHHHHHHHCCeeecCCChHHEEEecCC-----CeEEEeecccceecCCCccc-----cCCcccccCCCChHHhhCCCC-
Confidence            99999999999999999999999997 4     78999999999765332111     112357889999999865331 


Q ss_pred             ccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccc---------------c----c---cccC--------CCCCCcc
Q psy4039         429 FSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY---------------E----V---NALP--------QLNTNVP  478 (588)
Q Consensus       429 ~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~---------------~----~---~~~~--------~~~~~~~  478 (588)
                          .+.++|||||||++|||++|..||.+.......               .    .   ...+        .....++
T Consensus       189 ----~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (295)
T cd07837         189 ----YSTPVDIWSVGCIFAEMSRKQPLFPGDSELQQLLHIFKLLGTPTEQVWPGVSKLRDWHEFPQWKPQDLSRAVPDLS  264 (295)
T ss_pred             ----CCchHHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCCChhhCcchhhccchhhcCcccchhHHHhccccC
Confidence                357899999999999999999999653111000               0    0   0000        0113578


Q ss_pred             HHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCcccc
Q psy4039         479 EVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLY  518 (588)
Q Consensus       479 ~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~  518 (588)
                      +++.++|.+||+.||.+||++++++.         |||++
T Consensus       265 ~~~~~~i~~~l~~~P~~R~~~~eil~---------~~~~~  295 (295)
T cd07837         265 PEGLDLLQKMLRYDPAKRISAKAALT---------HPYFD  295 (295)
T ss_pred             HHHHHHHHHHccCChhhcCCHHHHhc---------CCCcC
Confidence            88999999999999999999999999         99984

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=100.00  E-value=9.2e-39  Score=325.97  Aligned_cols=253  Identities=19%  Similarity=0.244  Sum_probs=196.6

Q ss_pred             cccCCeEEeeeecccCceeEEEEEEC-------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhh
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFR-------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSV  265 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~-------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l  265 (588)
                      +...+|.+.+.||+|+||.||+|.+.       +..||||++.....    .            .....+.+|+.++..+
T Consensus         2 i~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~----~------------~~~~~~~~e~~~~~~l   65 (283)
T cd05091           2 INLSTVRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAE----G------------PLREEFKHEAMMRSRL   65 (283)
T ss_pred             CCHHHHHHHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCC----H------------HHHHHHHHHHHHHhcC
Confidence            45577889999999999999999874       47899999853210    0            0123455688888776


Q ss_pred             cCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh-----------
Q psy4039         266 ENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER-----------  333 (588)
Q Consensus       266 ~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~-----------  333 (588)
                          +||||+++++++.+..                            ..++++||+ +++|.+++...           
T Consensus        66 ----~h~~iv~~~~~~~~~~----------------------------~~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~  113 (283)
T cd05091          66 ----QHPNIVCLLGVVTKEQ----------------------------PLSMIFSYCSHSDLHEFLVMRSPHSDVGSTDD  113 (283)
T ss_pred             ----CCCCcCeEEEEEcCCC----------------------------ceEEEEEcCCCCcHHHHHHhcCCCcccccccc
Confidence                8999999999987632                            388999999 57999998632           


Q ss_pred             ----cCCCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCcccccccccc
Q psy4039         334 ----CAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIE  409 (588)
Q Consensus       334 ----~~~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~  409 (588)
                          ...+++..+..++.|++.||.|||++||+||||||+|||++++     +.+||+|||+++.........   ....
T Consensus       114 ~~~~~~~~~~~~~~~~~~ql~~aL~~lH~~gi~H~dlkp~Nil~~~~-----~~~kl~Dfg~~~~~~~~~~~~---~~~~  185 (283)
T cd05091         114 DKTVKSTLEPADFVHIVTQIAAGMEFLSSHHVVHKDLATRNVLVFDK-----LNVKISDLGLFREVYAADYYK---LMGN  185 (283)
T ss_pred             ccccccccCHHHHHHHHHHHHHHHHHHHHcCccccccchhheEecCC-----CceEecccccccccccchhee---eccC
Confidence                1247888999999999999999999999999999999999977     789999999988654322111   1123


Q ss_pred             ccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccccc---ccccCCCCCCccHHHHHHH
Q psy4039         410 LGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTDYE---VNALPQLNTNVPEVMRRLV  485 (588)
Q Consensus       410 ~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~~~---~~~~~~~~~~~~~~l~~Li  485 (588)
                      ..+++.|+|||.+.+..      .+.++|||||||++|||++ |..||.+........   .......+..+|.++.+++
T Consensus       186 ~~~~~~y~aPE~~~~~~------~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~li  259 (283)
T cd05091         186 SLLPIRWMSPEAIMYGK------FSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVIEMIRNRQVLPCPDDCPAWVYTLM  259 (283)
T ss_pred             ccCCccccCHHHHhcCC------CCcchhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCcCCCCCCCCHHHHHHH
Confidence            45678999999986554      4578999999999999998 888887632221111   2223345678999999999


Q ss_pred             HHhhhhCCCCCCCHHHHHHHHh
Q psy4039         486 AKLLENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       486 ~~~L~~dP~~Rps~~e~l~~L~  507 (588)
                      .+||+.+|.+||++++++..|+
T Consensus       260 ~~cl~~~p~~RP~~~~i~~~l~  281 (283)
T cd05091         260 LECWNEFPSRRPRFKDIHSRLR  281 (283)
T ss_pred             HHHhCCCcccCCCHHHHHHHhh
Confidence            9999999999999999988665

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=100.00  E-value=3.6e-38  Score=318.57  Aligned_cols=254  Identities=19%  Similarity=0.259  Sum_probs=199.7

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEEC-CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCC
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLP  269 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~  269 (588)
                      |++..++|.+.+.||+|+||.||+|.+. ...||||++.....                  ....+.+|+.+++.+    
T Consensus         1 ~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~valK~~~~~~~------------------~~~~~~~E~~~l~~l----   58 (262)
T cd05071           1 WEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM------------------SPEAFLQEAQVMKKL----   58 (262)
T ss_pred             CCCChHHeeEeeecCCCCCCcEEEEEecCCceEEEEecccCcc------------------CHHHHHHHHHHHHhC----
Confidence            3455578999999999999999999886 45799999853111                  123466789999887    


Q ss_pred             CCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh-cCCCCHHHHHHHHH
Q psy4039         270 PHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER-CAQLSMHERVLLFT  347 (588)
Q Consensus       270 ~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~-~~~l~~~~~~~i~~  347 (588)
                      +||||+++++++.+.                             ..+++|||+ +|+|.+++... ...+++..+..++.
T Consensus        59 ~~~~i~~~~~~~~~~-----------------------------~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~  109 (262)
T cd05071          59 RHEKLVQLYAVVSEE-----------------------------PIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAA  109 (262)
T ss_pred             CCCCcceEEEEECCC-----------------------------CcEEEEEcCCCCcHHHHHhhccccCCCHHHHHHHHH
Confidence            899999999876431                             278999999 57999999864 33689999999999


Q ss_pred             HHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCC
Q psy4039         348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG  427 (588)
Q Consensus       348 ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~  427 (588)
                      |+++||.|||+.+|+||||||+||+++.+     +.++|+|||.++.........    .....++..|+|||+..+.. 
T Consensus       110 ~l~~aL~~lH~~~i~H~dl~p~Nill~~~-----~~~~L~dfg~~~~~~~~~~~~----~~~~~~~~~y~~PE~~~~~~-  179 (262)
T cd05071         110 QIASGMAYVERMNYVHRDLRAANILVGEN-----LVCKVADFGLARLIEDNEYTA----RQGAKFPIKWTAPEAALYGR-  179 (262)
T ss_pred             HHHHHHHHHHHCCccccccCcccEEEcCC-----CcEEeccCCceeecccccccc----ccCCcccceecCHhHhccCC-
Confidence            99999999999999999999999999987     789999999997654422111    11234677899999986554 


Q ss_pred             CccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccccc---ccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHH
Q psy4039         428 LFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTDYE---VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAA  503 (588)
Q Consensus       428 ~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~~~---~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l  503 (588)
                           .+.++|||||||++|||++ |..||.+........   .......+..++..+.+++.+||+.||++||++.+++
T Consensus       180 -----~~~~~DvwslG~~l~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~~~  254 (262)
T cd05071         180 -----FTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQ  254 (262)
T ss_pred             -----CCchhhHHHHHHHHHHHHcCCCCCCCCCChHHHHHHHhcCCCCCCccccCHHHHHHHHHHccCCcccCCCHHHHH
Confidence                 4578999999999999999 888886643221111   1112233456889999999999999999999999999


Q ss_pred             HHHhhhh
Q psy4039         504 TVCQLYL  510 (588)
Q Consensus       504 ~~L~~~~  510 (588)
                      +.|+.++
T Consensus       255 ~~l~~~~  261 (262)
T cd05071         255 AFLEDYF  261 (262)
T ss_pred             HHHHHhc
Confidence            9887654

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=100.00  E-value=3.4e-38  Score=323.75  Aligned_cols=255  Identities=19%  Similarity=0.254  Sum_probs=200.1

Q ss_pred             cccCCeEEeeeecccCceeEEEEEEC-------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhh
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFR-------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSV  265 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~-------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l  265 (588)
                      ++..+|.+.+.||+|+||.||+|.+.       +..+|+|.+.....                 ...+.+.+|+.+++.+
T Consensus         2 ~~~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~-----------------~~~~~~~~e~~~l~~l   64 (291)
T cd05094           2 IKRRDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTL-----------------AARKDFQREAELLTNL   64 (291)
T ss_pred             CchHHeEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCccH-----------------HHHHHHHHHHHHHhcC
Confidence            34578999999999999999999864       45699998742110                 0123456788888887


Q ss_pred             cCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc----------
Q psy4039         266 ENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC----------  334 (588)
Q Consensus       266 ~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~----------  334 (588)
                          +||||+++++++.+..                            ..++||||+ +++|.+++....          
T Consensus        65 ----~h~~i~~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~  112 (291)
T cd05094          65 ----QHEHIVKFYGVCGDGD----------------------------PLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQ  112 (291)
T ss_pred             ----CCCCcceEEEEEccCC----------------------------ceEEEEecCCCCcHHHHHHhcCcccccccccc
Confidence                9999999999987532                            389999999 689999997642          


Q ss_pred             -----CCCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCcccccccccc
Q psy4039         335 -----AQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIE  409 (588)
Q Consensus       335 -----~~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~  409 (588)
                           ..+++..++.++.|++.||.|||++||+||||||+|||++.+     +.++|+|||++.........   .....
T Consensus       113 ~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~Nil~~~~-----~~~~l~dfg~a~~~~~~~~~---~~~~~  184 (291)
T cd05094         113 PRQAKGELGLSQMLHIASQIASGMVYLASQHFVHRDLATRNCLVGAN-----LLVKIGDFGMSRDVYSTDYY---RVGGH  184 (291)
T ss_pred             cccCcCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccCcceEEEccC-----CcEEECCCCcccccCCCcee---ecCCC
Confidence                 248999999999999999999999999999999999999987     79999999999765432111   11123


Q ss_pred             ccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHH
Q psy4039         410 LGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLV  485 (588)
Q Consensus       410 ~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li  485 (588)
                      ..|++.|+|||++.+..      .+.++|||||||++|||++ |..||........   ......+..+..+|..+.+++
T Consensus       185 ~~~~~~y~aPE~~~~~~------~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li  258 (291)
T cd05094         185 TMLPIRWMPPESIMYRK------FTTESDVWSFGVILWEIFTYGKQPWFQLSNTEVIECITQGRVLERPRVCPKEVYDIM  258 (291)
T ss_pred             CCcceeecChHHhccCC------CCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhCCCCCCCCccCCHHHHHHH
Confidence            45788999999987654      4568999999999999998 9999865322111   122233344566889999999


Q ss_pred             HHhhhhCCCCCCCHHHHHHHHhhhh
Q psy4039         486 AKLLENDPSDRPSAELAATVCQLYL  510 (588)
Q Consensus       486 ~~~L~~dP~~Rps~~e~l~~L~~~~  510 (588)
                      .+||+.||++||+++++++.|+...
T Consensus       259 ~~~l~~~P~~Rpt~~~v~~~l~~~~  283 (291)
T cd05094         259 LGCWQREPQQRLNIKEIYKILHALG  283 (291)
T ss_pred             HHHcccChhhCcCHHHHHHHHHHHH
Confidence            9999999999999999999887553

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=100.00  E-value=4.9e-38  Score=325.38  Aligned_cols=256  Identities=26%  Similarity=0.269  Sum_probs=199.6

Q ss_pred             ccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCC
Q psy4039         194 KVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPH  271 (588)
Q Consensus       194 ~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~H  271 (588)
                      ..++|++.+.||+|+||.||+|.+.  +..||+|.+.......               .......+|+.+++.+    +|
T Consensus         5 ~~~~y~~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~---------------~~~~~~~~E~~~l~~l----~h   65 (309)
T cd07845           5 SVTEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERD---------------GIPISSLREITLLLNL----RH   65 (309)
T ss_pred             cccceeEeeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCC---------------CCcchhhHHHHHHHhC----CC
Confidence            4589999999999999999999986  7899999985321110               0112334689999887    99


Q ss_pred             CceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4039         272 PNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLE  351 (588)
Q Consensus       272 pNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~  351 (588)
                      +||+++++++.+..                          ...+++||||++++|.+++......+++.++..++.|+++
T Consensus        66 ~~i~~~~~~~~~~~--------------------------~~~~~lv~e~~~~~l~~~l~~~~~~l~~~~~~~~~~qi~~  119 (309)
T cd07845          66 PNIVELKEVVVGKH--------------------------LDSIFLVMEYCEQDLASLLDNMPTPFSESQVKCLMLQLLR  119 (309)
T ss_pred             CCCcceEEEEecCC--------------------------CCeEEEEEecCCCCHHHHHHhcccCCCHHHHHHHHHHHHH
Confidence            99999999987531                          1248999999998999998875557999999999999999


Q ss_pred             HHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccC
Q psy4039         352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF  431 (588)
Q Consensus       352 gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~  431 (588)
                      ||.|||+.|++||||||+||+++.+     +.+||+|||++.........     .....+++.|+|||++.+...    
T Consensus       120 ~l~~lH~~~i~H~dl~p~nil~~~~-----~~~kL~dfg~~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~----  185 (309)
T cd07845         120 GLQYLHENFIIHRDLKVSNLLLTDK-----GCLKIADFGLARTYGLPAKP-----MTPKVVTLWYRAPELLLGCTT----  185 (309)
T ss_pred             HHHHHHhCCeecCCCCHHHEEECCC-----CCEEECccceeeecCCccCC-----CCcccccccccChhhhcCCCC----
Confidence            9999999999999999999999987     78999999999876542111     112346789999999865431    


Q ss_pred             CCCCcCchhhHHHHHHHHhcCCCCCcccccccccc------------------------ccccCC--------CCCCccH
Q psy4039         432 VNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE------------------------VNALPQ--------LNTNVPE  479 (588)
Q Consensus       432 ~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~------------------------~~~~~~--------~~~~~~~  479 (588)
                       ++.++||||+||++|||++|.+||..........                        ....+.        .....++
T Consensus       186 -~~~~~DvwslG~il~el~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (309)
T cd07845         186 -YTTAIDMWAVGCILAELLAHKPLLPGKSEIEQLDLIIQLLGTPNESIWPGFSDLPLVGKFTLPKQPYNNLKHKFPWLSE  264 (309)
T ss_pred             -cCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChhhchhhhcccccccccccCCCCCchHHhccccCH
Confidence             4568999999999999999999996532111000                        000000        0123578


Q ss_pred             HHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCcccc
Q psy4039         480 VMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLY  518 (588)
Q Consensus       480 ~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~  518 (588)
                      ++.++|.+||+.||++|||+++++.         |||++
T Consensus       265 ~~~~li~~ml~~dp~~R~t~~~il~---------h~~f~  294 (309)
T cd07845         265 AGLRLLNFLLMYDPKKRATAEEALE---------SSYFK  294 (309)
T ss_pred             HHHHHHHHHhcCChhhCcCHHHHhc---------Chhhc
Confidence            8999999999999999999999998         99998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=100.00  E-value=5e-38  Score=318.01  Aligned_cols=252  Identities=24%  Similarity=0.310  Sum_probs=197.4

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      .+++.....||+|+||.||+|.+.  +..||+|.+....    ..             ..+.+.+|+.+++.+    +||
T Consensus         7 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~----~~-------------~~~~~~~e~~~l~~l----~h~   65 (268)
T cd06624           7 YDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERD----SR-------------YVQPLHEEIALHSYL----KHR   65 (268)
T ss_pred             cccCCceEEEecCCceEEEEeEecCCCcEEEEEEecCCC----HH-------------HHHHHHHHHHHHHhc----CCC
Confidence            355556678999999999999976  6789999874311    00             123456788999887    999


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCC--CHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQL--SMHERVLLFTQL  349 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l--~~~~~~~i~~ql  349 (588)
                      ||+++++++.+.                            ...+++|||+ +++|.+++......+  ++..+..++.|+
T Consensus        66 ~iv~~~~~~~~~----------------------------~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi  117 (268)
T cd06624          66 NIVQYLGSDSEN----------------------------GFFKIFMEQVPGGSLSALLRSKWGPLKDNEQTIIFYTKQI  117 (268)
T ss_pred             CeeeeeeeeccC----------------------------CEEEEEEecCCCCCHHHHHHHhcccCCCcHHHHHHHHHHH
Confidence            999999988763                            2489999999 589999998754455  888999999999


Q ss_pred             HHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCc
Q psy4039         350 LEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF  429 (588)
Q Consensus       350 ~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~  429 (588)
                      +.||.|||++||+||||||+||+++.+.    +.++|+|||++........     ......|++.|+|||++...... 
T Consensus       118 ~~al~~lH~~~i~h~dl~p~nil~~~~~----~~~~l~dfg~~~~~~~~~~-----~~~~~~~~~~~~aPE~~~~~~~~-  187 (268)
T cd06624         118 LEGLKYLHDNQIVHRDIKGDNVLVNTYS----GVVKISDFGTSKRLAGINP-----CTETFTGTLQYMAPEVIDKGPRG-  187 (268)
T ss_pred             HHHHHHHHHCCEeecCCCHHHEEEcCCC----CeEEEecchhheecccCCC-----ccccCCCCccccChhhhcccccc-
Confidence            9999999999999999999999998642    5899999999876543211     11134589999999998654322 


Q ss_pred             cCCCCCcCchhhHHHHHHHHhcCCCCCcccccccc--c---cccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHH
Q psy4039         430 SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD--Y---EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAAT  504 (588)
Q Consensus       430 ~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~--~---~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~  504 (588)
                         .+.++|||||||++|+|++|+.||........  .   .....+.++..+++++++++.+||+.+|.+|||+.+++.
T Consensus       188 ---~~~~~Dv~slGvvl~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~  264 (268)
T cd06624         188 ---YGAPADIWSLGCTIVEMATGKPPFIELGEPQAAMFKVGMFKIHPEIPESLSAEAKNFILRCFEPDPDKRASAHDLLQ  264 (268)
T ss_pred             ---CCchhhhHHHHHHHHHHHhCCCCCccccChhhhHhhhhhhccCCCCCcccCHHHHHHHHHHcCCCchhCCCHHHHHh
Confidence               34689999999999999999999965321110  0   112334566778899999999999999999999999999


Q ss_pred             HHhhhhhcCCccc
Q psy4039         505 VCQLYLWAPKHWL  517 (588)
Q Consensus       505 ~L~~~~~~~h~w~  517 (588)
                               |||+
T Consensus       265 ---------~~~~  268 (268)
T cd06624         265 ---------DPFL  268 (268)
T ss_pred             ---------CCCC
Confidence                     9996

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=100.00  E-value=8e-38  Score=316.41  Aligned_cols=257  Identities=22%  Similarity=0.267  Sum_probs=199.5

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      .+|+..+.||+|+||.||+|.+.  +..||+|.+...........            ....+.+|+.+++.+    +|||
T Consensus         2 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~------------~~~~~~~e~~~l~~l----~h~~   65 (266)
T cd06651           2 INWRRGKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSK------------EVSALECEIQLLKNL----QHER   65 (266)
T ss_pred             CCccccceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHH------------HHHHHHHHHHHHHHc----CCCC
Confidence            47889999999999999999985  78999999854322111110            123456788899887    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++++.+..                          ...++++|||+ +++|.+++.... .+++.....++.|++.|
T Consensus        66 i~~~~~~~~~~~--------------------------~~~~~l~~e~~~~~~L~~~l~~~~-~l~~~~~~~~~~qi~~~  118 (266)
T cd06651          66 IVQYYGCLRDRA--------------------------EKTLTIFMEYMPGGSVKDQLKAYG-ALTESVTRKYTRQILEG  118 (266)
T ss_pred             eeeEEEEEEcCC--------------------------CCEEEEEEeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence            999999886521                          12489999999 579999998654 68999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||+.+|+||||||+||+++.+     +.++|+|||+++........  ........|+..|+|||++.+..      
T Consensus       119 l~~LH~~~i~H~~l~p~nil~~~~-----~~~~l~dfg~~~~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~------  185 (266)
T cd06651         119 MSYLHSNMIVHRDIKGANILRDSA-----GNVKLGDFGASKRLQTICMS--GTGIRSVTGTPYWMSPEVISGEG------  185 (266)
T ss_pred             HHHHHhCCeeeCCCCHHHEEECCC-----CCEEEccCCCcccccccccc--CCccccCCccccccCHHHhCCCC------
Confidence            999999999999999999999877     78999999998765331110  11111345899999999987654      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCccccccccc----cccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhh
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY----EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQL  508 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~----~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~  508 (588)
                      .+.++|||||||++|||++|+.||.........    .....+.++..+++.+++++ +||..+|++||+++++++    
T Consensus       186 ~~~~~Dv~slG~i~~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li-~~~~~~p~~Rp~~~eil~----  260 (266)
T cd06651         186 YGRKADVWSLGCTVVEMLTEKPPWAEYEAMAAIFKIATQPTNPQLPSHISEHARDFL-GCIFVEARHRPSAEELLR----  260 (266)
T ss_pred             CCchhhhHHHHHHHHHHHHCCCCccccchHHHHHHHhcCCCCCCCchhcCHHHHHHH-HHhcCChhhCcCHHHHhc----
Confidence            457899999999999999999999753211111    11223455667788899999 688889999999999999    


Q ss_pred             hhhcCCcccc
Q psy4039         509 YLWAPKHWLY  518 (588)
Q Consensus       509 ~~~~~h~w~~  518 (588)
                           |||++
T Consensus       261 -----hp~~~  265 (266)
T cd06651         261 -----HPFAQ  265 (266)
T ss_pred             -----Ccccc
Confidence                 99985

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=100.00  E-value=4.8e-38  Score=323.40  Aligned_cols=279  Identities=20%  Similarity=0.231  Sum_probs=216.2

Q ss_pred             CCccccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhh
Q psy4039         188 PDVDDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSV  265 (588)
Q Consensus       188 ~~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l  265 (588)
                      ...+.+..++|++.+.||+|+||.||+|.+.  ++.||||.+.......                ....+.+|+.++...
T Consensus         7 ~~~~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~----------------~~~~~~~e~~~~~~~   70 (296)
T cd06618           7 GQKYPADLNDLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKE----------------ENKRILMDLDVVLKS   70 (296)
T ss_pred             ceeccCCcchheeeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCChH----------------HHHHHHHHHHHHHhc
Confidence            3455677799999999999999999999998  8999999985422110                112233456555544


Q ss_pred             cCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHH
Q psy4039         266 ENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLL  345 (588)
Q Consensus       266 ~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i  345 (588)
                         ..||||+++++++.+..                            ..|++|||++++|.+++......+++..+..+
T Consensus        71 ---~~~~~i~~~~~~~~~~~----------------------------~~~~v~e~~~~~l~~l~~~~~~~l~~~~~~~i  119 (296)
T cd06618          71 ---HDCPYIVKCYGYFITDS----------------------------DVFICMELMSTCLDKLLKRIQGPIPEDILGKM  119 (296)
T ss_pred             ---cCCCchHhhheeeecCC----------------------------eEEEEeeccCcCHHHHHHHhcCCCCHHHHHHH
Confidence               46999999999987632                            48999999988888888765558999999999


Q ss_pred             HHHHHHHHHHHHh-CCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhc
Q psy4039         346 FTQLLEGVTHLNM-HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALA  424 (588)
Q Consensus       346 ~~ql~~gL~yLH~-~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~  424 (588)
                      +.|+++||.|||+ .||+||||+|+||+++.+     +.+||+|||++.........      ....|++.|+|||++.+
T Consensus       120 ~~~i~~~l~~lH~~~~i~H~dl~p~nill~~~-----~~~kL~dfg~~~~~~~~~~~------~~~~~~~~y~aPE~~~~  188 (296)
T cd06618         120 TVAIVKALHYLKEKHGVIHRDVKPSNILLDAS-----GNVKLCDFGISGRLVDSKAK------TRSAGCAAYMAPERIDP  188 (296)
T ss_pred             HHHHHHHHHHHHhhCCEecCCCcHHHEEEcCC-----CCEEECccccchhccCCCcc------cCCCCCccccCHhhcCC
Confidence            9999999999997 699999999999999877     78999999998765432111      13357889999999875


Q ss_pred             CCCCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccc-c---cccccCCC--CCCccHHHHHHHHHhhhhCCCCCCC
Q psy4039         425 TPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD-Y---EVNALPQL--NTNVPEVMRRLVAKLLENDPSDRPS  498 (588)
Q Consensus       425 ~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~-~---~~~~~~~~--~~~~~~~l~~Li~~~L~~dP~~Rps  498 (588)
                      ...  ....+.++||||||+++|||++|+.||........ .   .....+..  ...+++++.+++.+||+.||++||+
T Consensus       189 ~~~--~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp~  266 (296)
T cd06618         189 PDP--NPKYDIRADVWSLGISLVELATGQFPYKNCKTEFEVLTKILQEEPPSLPPNEGFSPDFCSFVDLCLTKDHRKRPK  266 (296)
T ss_pred             CCC--ccccccchhHHHHHHHHHHHHhCCCCCCcchhHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHccCChhhCCC
Confidence            431  11144689999999999999999999965211100 0   01111112  2347899999999999999999999


Q ss_pred             HHHHHHHHhhhhhcCCccccCCCCChhHHHHHHHhhh
Q psy4039         499 AELAATVCQLYLWAPKHWLYGATPSHNEIMQWLLTLT  535 (588)
Q Consensus       499 ~~e~l~~L~~~~~~~h~w~~~~~~~~~~~~~~l~~~~  535 (588)
                      +++++.         |+|+....+...++..|+..+-
T Consensus       267 ~~~il~---------~~~~~~~~~~~~~~~~~~~~~~  294 (296)
T cd06618         267 YRELLQ---------HPFIRRYETAEVDVAGWFQDVM  294 (296)
T ss_pred             HHHHhc---------ChhhhccchhHHHHHHHHHHHh
Confidence            999999         9999999999999999988753

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=100.00  E-value=5.5e-38  Score=317.30  Aligned_cols=246  Identities=24%  Similarity=0.290  Sum_probs=192.3

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||.||+|++.  ++.||+|++......                 ....+.+|+.+++.+    +|||
T Consensus         9 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~-----------------~~~~~~~e~~~l~~~----~h~~   67 (267)
T cd06646           9 HDYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPGD-----------------DFSLIQQEIFMVKEC----KHCN   67 (267)
T ss_pred             hhcchhheeecCCCeEEEEEEECCCCeEEEEEEEecCccc-----------------hHHHHHHHHHHHHhc----CCCC
Confidence            78999999999999999999985  789999998532110                 112345688888887    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++++.+..                            ..++||||+ +++|.+++.... .+++.++..++.|++.|
T Consensus        68 ii~~~~~~~~~~----------------------------~~~iv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~qi~~~  118 (267)
T cd06646          68 IVAYFGSYLSRE----------------------------KLWICMEYCGGGSLQDIYHVTG-PLSELQIAYVCRETLQG  118 (267)
T ss_pred             eeeeeEEEEeCC----------------------------EEEEEEeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHH
Confidence            999999987632                            489999999 579999987654 78999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||+.+|+||||||+||+++.+     +.++|+|||+++.......     ......|++.|+|||.+......   .
T Consensus       119 l~~lH~~~i~H~dl~p~nill~~~-----~~~~l~dfg~~~~~~~~~~-----~~~~~~~~~~y~~PE~~~~~~~~---~  185 (267)
T cd06646         119 LAYLHSKGKMHRDIKGANILLTDN-----GDVKLADFGVAAKITATIA-----KRKSFIGTPYWMAPEVAAVEKNG---G  185 (267)
T ss_pred             HHHHHHCCccccCCCHHHEEECCC-----CCEEECcCccceeeccccc-----ccCccccCccccCHhHcccccCC---C
Confidence            999999999999999999999877     7899999999976543211     11235689999999998543211   1


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCccccccccc---cc-c-ccC--CCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHH
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY---EV-N-ALP--QLNTNVPEVMRRLVAKLLENDPSDRPSAELAAT  504 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~---~~-~-~~~--~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~  504 (588)
                      .+.++|||||||++|||++|..||.........   .. . ..+  .....++..+.+++.+||+.||++|||++++++
T Consensus       186 ~~~~~Dvws~G~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~  264 (267)
T cd06646         186 YNQLCDIWAVGITAIELAELQPPMFDLHPMRALFLMSKSNFQPPKLKDKTKWSSTFHNFVKISLTKNPKKRPTAERLLT  264 (267)
T ss_pred             CcchhhHHHHHHHHHHHHhCCCCccccchhhhheeeecCCCCCCCCccccccCHHHHHHHHHHhhCChhhCcCHHHHhc
Confidence            346799999999999999999998653211110   00 0 111  112356889999999999999999999999988

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=100.00  E-value=1.9e-38  Score=317.84  Aligned_cols=244  Identities=24%  Similarity=0.315  Sum_probs=189.8

Q ss_pred             eeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEEee
Q psy4039         202 KFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHF  279 (588)
Q Consensus       202 ~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l~~  279 (588)
                      +.||+|+||.||+|++.  ++.||+|.+.... .   .            .....+.+|+.+++.+    +||||+++++
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~-~---~------------~~~~~~~~e~~~l~~l----~h~~i~~~~~   60 (252)
T cd05084           1 ERIGRGNFGEVFSGRLRADNTPVAVKSCRETL-P---P------------DLKAKFLQEARILKQY----SHPNIVRLIG   60 (252)
T ss_pred             CccCcccCccEEEEEEecCCceEEEEecCccC-C---H------------HHHHHHHHHHHHHHhC----CCCCcceEEE
Confidence            46999999999999985  8899999874211 0   0            0223456788888887    8999999999


Q ss_pred             eeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh
Q psy4039         280 AFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNM  358 (588)
Q Consensus       280 ~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yLH~  358 (588)
                      ++.+..                            ..++||||+ +++|.+++......+++.+++.++.|++.||.|||+
T Consensus        61 ~~~~~~----------------------------~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~  112 (252)
T cd05084          61 VCTQKQ----------------------------PIYIVMELVQGGDFLTFLRTEGPRLKVKELIQMVENAAAGMEYLES  112 (252)
T ss_pred             EEcCCC----------------------------CeEEEEeeccCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            987632                            389999999 679999998765578999999999999999999999


Q ss_pred             CCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCCcCc
Q psy4039         359 HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSD  438 (588)
Q Consensus       359 ~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksD  438 (588)
                      ++|+||||||+|||++.+     +.+||+|||+++....+....   ......++..|+|||.+.+..      .+.++|
T Consensus       113 ~~i~H~dl~p~nil~~~~-----~~~kl~dfg~~~~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~------~~~~~D  178 (252)
T cd05084         113 KHCIHRDLAARNCLVTEK-----NVLKISDFGMSREEEDGVYAS---TGGMKQIPVKWTAPEALNYGR------YSSESD  178 (252)
T ss_pred             CCccccccchheEEEcCC-----CcEEECccccCcccccccccc---cCCCCCCceeecCchhhcCCC------CChHHH
Confidence            999999999999999877     789999999987654321111   001122356799999986654      456899


Q ss_pred             hhhHHHHHHHHhc-CCCCCccccccc---cccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHh
Q psy4039         439 AWTAGTVAYEIFG-HDNPFYQSARNT---DYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       439 VwS~Gvil~Ellt-G~~Pf~~~~~~~---~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~  507 (588)
                      ||||||++|||++ |..||.......   ..........+..+|..+.+++.+||+.||++|||++++++.|+
T Consensus       179 v~slG~il~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~  251 (252)
T cd05084         179 VWSFGILLWEAFSLGAVPYANLSNQQTREAIEQGVRLPCPELCPDAVYRLMERCWEYDPGQRPSFSTVHQELQ  251 (252)
T ss_pred             HHHHHHHHHHHHhCCCCCccccCHHHHHHHHHcCCCCCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHh
Confidence            9999999999997 888886532111   11112233455678899999999999999999999999988664

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=100.00  E-value=4.7e-38  Score=316.99  Aligned_cols=252  Identities=20%  Similarity=0.259  Sum_probs=198.5

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEEC-CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCC
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLP  269 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~  269 (588)
                      |++..++|.+...||+|+||.||+|.+. +..+|+|.+.....                  ..+.+.+|+.+++.+    
T Consensus         1 ~~~~~~~~~~~~~ig~g~~~~v~~~~~~~~~~~~lK~~~~~~~------------------~~~~~~~E~~~l~~l----   58 (260)
T cd05069           1 WEIPRESLRLDVKLGQGCFGEVWMGTWNGTTKVAIKTLKPGTM------------------MPEAFLQEAQIMKKL----   58 (260)
T ss_pred             CcCChHHeeeeeeecCcCCCeEEEEEEcCCceEEEEEcccCCc------------------cHHHHHHHHHHHHhC----
Confidence            3455578999999999999999999987 45799998743211                  123456799999887    


Q ss_pred             CCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh-cCCCCHHHHHHHHH
Q psy4039         270 PHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER-CAQLSMHERVLLFT  347 (588)
Q Consensus       270 ~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~-~~~l~~~~~~~i~~  347 (588)
                      +||||+++++++.+.                             ..+++|||+ +++|.+++... ...+++..+..++.
T Consensus        59 ~h~~i~~~~~~~~~~-----------------------------~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~  109 (260)
T cd05069          59 RHDKLVPLYAVVSEE-----------------------------PIYIVTEFMGKGSLLDFLKEGDGKYLKLPQLVDMAA  109 (260)
T ss_pred             CCCCeeeEEEEEcCC-----------------------------CcEEEEEcCCCCCHHHHHhhCCCCCCCHHHHHHHHH
Confidence            999999999876431                             278999999 57999999764 33589999999999


Q ss_pred             HHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCC
Q psy4039         348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG  427 (588)
Q Consensus       348 ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~  427 (588)
                      |++.||.|||+.||+||||||+||+++++     +.++|+|||+++.........    .....++..|+|||+..+.. 
T Consensus       110 ~l~~al~~lH~~~i~H~dl~~~Nill~~~-----~~~~l~dfg~~~~~~~~~~~~----~~~~~~~~~y~~Pe~~~~~~-  179 (260)
T cd05069         110 QIADGMAYIERMNYIHRDLRAANILVGDN-----LVCKIADFGLARLIEDNEYTA----RQGAKFPIKWTAPEAALYGR-  179 (260)
T ss_pred             HHHHHHHHHHhCCEeecccCcceEEEcCC-----CeEEECCCccceEccCCcccc----cCCCccchhhCCHHHhccCC-
Confidence            99999999999999999999999999987     789999999997654322111    11234677899999986554 


Q ss_pred             CccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHH
Q psy4039         428 LFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAA  503 (588)
Q Consensus       428 ~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l  503 (588)
                           .+.++|||||||++|||++ |..||.+......   ......+..+..++..+++++.+||+.||++||++++++
T Consensus       180 -----~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~  254 (260)
T cd05069         180 -----FTIKSDVWSFGILLTELVTKGRVPYPGMVNREVLEQVERGYRMPCPQGCPESLHELMKLCWKKDPDERPTFEYIQ  254 (260)
T ss_pred             -----cChHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCcccCHHHHHHHHHHccCCcccCcCHHHHH
Confidence                 3467999999999999999 8999976432211   111222344567889999999999999999999999999


Q ss_pred             HHHhh
Q psy4039         504 TVCQL  508 (588)
Q Consensus       504 ~~L~~  508 (588)
                      +.|+.
T Consensus       255 ~~l~~  259 (260)
T cd05069         255 SFLED  259 (260)
T ss_pred             HHHhc
Confidence            87763

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=100.00  E-value=1.1e-38  Score=322.35  Aligned_cols=246  Identities=25%  Similarity=0.347  Sum_probs=190.4

Q ss_pred             EEeeeecccCceeEEEEEEC------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         199 QIGKFIAKGTNAVVYEATFR------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       199 ~~~~~IG~G~fG~Vy~a~~~------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      ++.+.||.|.||.||+|.+.      +..|+||++....   ..             ...+.+.+|+.+++.+    +||
T Consensus         2 ~~~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~---~~-------------~~~~~~~~e~~~l~~l----~h~   61 (259)
T PF07714_consen    2 KLIKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSS---SE-------------EEEEEFLNEIQILRKL----RHP   61 (259)
T ss_dssp             EEEEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTS---SH-------------HHHHHHHHHHHHHHTH----SBT
T ss_pred             EEeeEEccCCCcEEEEEEEEcccCCCCEEEEEEEecccc---cc-------------ccceeeeecccccccc----ccc
Confidence            56789999999999999998      7899999994311   10             0134566788999887    999


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh-cCCCCHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER-CAQLSMHERVLLFTQLL  350 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~-~~~l~~~~~~~i~~ql~  350 (588)
                      ||++++|++....                            ..++||||+ +|+|.++|... ...+++.++..|+.|++
T Consensus        62 ni~~~~g~~~~~~----------------------------~~~lv~e~~~~g~L~~~L~~~~~~~~~~~~~~~i~~~i~  113 (259)
T PF07714_consen   62 NIVKLYGFCIENE----------------------------PLFLVMEYCPGGSLDDYLKSKNKEPLSEQQRLSIAIQIA  113 (259)
T ss_dssp             TBE-EEEEEESSS----------------------------SEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHH
T ss_pred             ccccccccccccc----------------------------ccccccccccccccccccccccccccccccccccccccc
Confidence            9999999998532                            289999999 58999999987 55899999999999999


Q ss_pred             HHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCcc
Q psy4039         351 EGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFS  430 (588)
Q Consensus       351 ~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~  430 (588)
                      +||.|||+++|+|+||+++|||++.+     +.+||+|||++.........   .......+...|+|||.+....    
T Consensus       114 ~~l~~Lh~~~iiH~~l~~~nill~~~-----~~~Kl~~f~~~~~~~~~~~~---~~~~~~~~~~~~~aPE~~~~~~----  181 (259)
T PF07714_consen  114 EALSYLHSNNIIHGNLSPSNILLDSN-----GQVKLSDFGLSRPISEKSKY---KNDSSQQLPLRYLAPEVLKDGE----  181 (259)
T ss_dssp             HHHHHHHHTTEEEST-SGGGEEEETT-----TEEEEESTTTGEETTTSSSE---EESTTSESGGGGS-HHHHHHSE----
T ss_pred             cccccccccccccccccccccccccc-----cccccccccccccccccccc---cccccccccccccccccccccc----
Confidence            99999999999999999999999988     89999999999876332111   1111344677999999998765    


Q ss_pred             CCCCCcCchhhHHHHHHHHhc-CCCCCccccccc---cccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHH
Q psy4039         431 FVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNT---DYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVC  506 (588)
Q Consensus       431 ~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~---~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L  506 (588)
                        .+.++||||||+++|||++ |+.||.+.....   ..........+..+|..+.++|..||+.||++|||++++++.|
T Consensus       182 --~~~ksDVysfG~~l~ei~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~C~~~~p~~RPs~~~i~~~L  259 (259)
T PF07714_consen  182 --YTKKSDVYSFGMLLYEILTLGKFPFSDYDNEEIIEKLKQGQRLPIPDNCPKDIYSLIQQCWSHDPEKRPSFQEILQEL  259 (259)
T ss_dssp             --ESHHHHHHHHHHHHHHHHTTSSGTTTTSCHHHHHHHHHTTEETTSBTTSBHHHHHHHHHHT-SSGGGS--HHHHHHHH
T ss_pred             --ccccccccccccccccccccccccccccccccccccccccccceeccchhHHHHHHHHHHcCCChhhCcCHHHHHhcC
Confidence              4578999999999999999 688986632211   1123333455678999999999999999999999999998744

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=100.00  E-value=4.8e-38  Score=316.72  Aligned_cols=251  Identities=22%  Similarity=0.278  Sum_probs=199.9

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEEC-CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCC
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLP  269 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~  269 (588)
                      |++.-++|++.++||+|+||.||+|... +..||+|.+.....                  ....+.+|+.+++.+    
T Consensus         1 ~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~~~------------------~~~~~~~E~~~l~~l----   58 (260)
T cd05067           1 WEVPRETLKLVKKLGAGQFGEVWMGYYNGHTKVAIKSLKQGSM------------------SPEAFLAEANLMKQL----   58 (260)
T ss_pred             CccchHHceeeeeeccCccceEEeeecCCCceEEEEEecCCCC------------------cHHHHHHHHHHHHhc----
Confidence            3455688999999999999999999986 68999999843211                  223466789999887    


Q ss_pred             CCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh-cCCCCHHHHHHHHH
Q psy4039         270 PHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER-CAQLSMHERVLLFT  347 (588)
Q Consensus       270 ~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~-~~~l~~~~~~~i~~  347 (588)
                      +||||+++++++.+.                             ..+++|||+ +++|.+++... +..+++.++..++.
T Consensus        59 ~h~~i~~~~~~~~~~-----------------------------~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~  109 (260)
T cd05067          59 QHPRLVRLYAVVTQE-----------------------------PIYIITEYMENGSLVDFLKTPEGIKLTINKLIDMAA  109 (260)
T ss_pred             CCcCeeeEEEEEccC-----------------------------CcEEEEEcCCCCCHHHHHHhcCCCCCCHHHHHHHHH
Confidence            899999999886431                             279999999 68999998764 34789999999999


Q ss_pred             HHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCC
Q psy4039         348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG  427 (588)
Q Consensus       348 ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~  427 (588)
                      |++.||+|||+.|++||||||+||+++.+     +.++|+|||++.........    ......++..|+|||++.+.. 
T Consensus       110 ~i~~al~~LH~~~i~H~dl~p~ni~i~~~-----~~~~l~dfg~~~~~~~~~~~----~~~~~~~~~~y~~pe~~~~~~-  179 (260)
T cd05067         110 QIAEGMAFIERKNYIHRDLRAANILVSET-----LCCKIADFGLARLIEDNEYT----AREGAKFPIKWTAPEAINYGT-  179 (260)
T ss_pred             HHHHHHHHHhcCCeecccccHHhEEEcCC-----CCEEEccCcceeecCCCCcc----cccCCcccccccCHHHhccCC-
Confidence            99999999999999999999999999987     78999999999776532111    111234677899999987554 


Q ss_pred             CccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHH
Q psy4039         428 LFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAA  503 (588)
Q Consensus       428 ~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l  503 (588)
                           .+.++|||||||++|||++ |+.||.+......   .......+.+..+|.++.+++.+||+.+|++||+++++.
T Consensus       180 -----~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~  254 (260)
T cd05067         180 -----FTIKSDVWSFGILLTEIVTYGRIPYPGMTNPEVIQNLERGYRMPRPDNCPEELYELMRLCWKEKPEERPTFEYLR  254 (260)
T ss_pred             -----cCcccchHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHH
Confidence                 4568999999999999998 9999975422111   111222345567889999999999999999999999999


Q ss_pred             HHHh
Q psy4039         504 TVCQ  507 (588)
Q Consensus       504 ~~L~  507 (588)
                      ..|+
T Consensus       255 ~~l~  258 (260)
T cd05067         255 SVLE  258 (260)
T ss_pred             HHhh
Confidence            8765

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=100.00  E-value=4.3e-38  Score=324.39  Aligned_cols=250  Identities=24%  Similarity=0.307  Sum_probs=201.3

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      .+|++.+.||.|+||.||+|.+.  ++.||||.+......                 ....+.+|+.+++.+    +|||
T Consensus        19 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~-----------------~~~~~~~e~~~l~~l----~h~~   77 (296)
T cd06655          19 KKYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQP-----------------KKELIINEILVMKEL----KNPN   77 (296)
T ss_pred             ceEEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEecccCc-----------------hHHHHHHHHHHHHhc----CCCc
Confidence            67999999999999999999875  789999998432111                 223456688888887    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++++.+..                            ..++|+||+ +++|..++...  .+++.++..++.|++.|
T Consensus        78 iv~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~~~~~--~l~~~~~~~i~~~l~~a  127 (296)
T cd06655          78 IVNFLDSFLVGD----------------------------ELFVVMEYLAGGSLTDVVTET--CMDEAQIAAVCRECLQA  127 (296)
T ss_pred             eeeeeeeEecCc----------------------------eEEEEEEecCCCcHHHHHHhc--CCCHHHHHHHHHHHHHH
Confidence            999999987632                            489999999 67999998765  79999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||++|++||||||+||+++.+     +.+||+|||++.........     .....|++.|+|||.+.+..      
T Consensus       128 l~~LH~~~i~H~dL~p~Nili~~~-----~~~kl~dfg~~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~------  191 (296)
T cd06655         128 LEFLHANQVIHRDIKSDNVLLGMD-----GSVKLTDFGFCAQITPEQSK-----RSTMVGTPYWMAPEVVTRKA------  191 (296)
T ss_pred             HHHHHHCCcccCCCCHHHEEECCC-----CCEEEccCccchhccccccc-----CCCcCCCccccCcchhcCCC------
Confidence            999999999999999999999887     78999999998765432111     11346899999999987554      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcccccccccc-----ccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHh
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE-----VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~-----~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~  507 (588)
                      .+.++|||||||++|+|++|+.||..........     .......+..+++.+.++|.+||..||.+||++.+++.   
T Consensus       192 ~~~~~Dv~slGvil~~lltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rpt~~~il~---  268 (296)
T cd06655         192 YGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPEKLSPIFRDFLNRCLEMDVEKRGSAKELLQ---  268 (296)
T ss_pred             CCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCcccCCcccCCHHHHHHHHHHhhcChhhCCCHHHHhh---
Confidence            4578999999999999999999997642211110     01111234568899999999999999999999999999   


Q ss_pred             hhhhcCCccccCCC
Q psy4039         508 LYLWAPKHWLYGAT  521 (588)
Q Consensus       508 ~~~~~~h~w~~~~~  521 (588)
                            |||++...
T Consensus       269 ------~~~~~~~~  276 (296)
T cd06655         269 ------HPFLKLAK  276 (296)
T ss_pred             ------ChHhhhcc
Confidence                  99998443

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=100.00  E-value=9.1e-38  Score=322.11  Aligned_cols=265  Identities=21%  Similarity=0.238  Sum_probs=199.5

Q ss_pred             ccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCC
Q psy4039         194 KVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPH  271 (588)
Q Consensus       194 ~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~H  271 (588)
                      .+++|++.+.||+|+||.||+|...  ++.||||.+.......               .......+|+.+++.+    +|
T Consensus        10 ~~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~---------------~~~~~~~~e~~~l~~l----~h   70 (310)
T cd07865          10 EVSKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKE---------------GFPITALREIKILQLL----KH   70 (310)
T ss_pred             hhhheEEEEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcC---------------CchhHHHHHHHHHHhC----CC
Confidence            3478999999999999999999986  7899999985321110               0112334688888887    99


Q ss_pred             CceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4039         272 PNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLE  351 (588)
Q Consensus       272 pNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~  351 (588)
                      |||+++++++.+....                    ........++||||++++|.+++......+++.++..++.|+++
T Consensus        71 ~~iv~~~~~~~~~~~~--------------------~~~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~i~~qi~~  130 (310)
T cd07865          71 ENVVNLIEICRTKATP--------------------YNRYKGSFYLVFEFCEHDLAGLLSNKNVKFTLSEIKKVMKMLLN  130 (310)
T ss_pred             CCccceEEEEeccccc--------------------ccCCCceEEEEEcCCCcCHHHHHHhcccCCCHHHHHHHHHHHHH
Confidence            9999999998764210                    11223358999999998999998876557999999999999999


Q ss_pred             HHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccC
Q psy4039         352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF  431 (588)
Q Consensus       352 gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~  431 (588)
                      ||.|||++||+|+||||+||+++.+     +.+||+|||++.......... ........++..|+|||++.+...    
T Consensus       131 al~~lH~~~i~H~dl~p~nil~~~~-----~~~kl~dfg~~~~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~----  200 (310)
T cd07865         131 GLYYIHRNKILHRDMKAANILITKD-----GILKLADFGLARAFSLSKNSK-PNRYTNRVVTLWYRPPELLLGERD----  200 (310)
T ss_pred             HHHHHHHCCeeccCCCHHHEEECCC-----CcEEECcCCCcccccCCcccC-CCCccCcccCccccCcHHhcCCcc----
Confidence            9999999999999999999999987     799999999998654422111 111123567889999999865431    


Q ss_pred             CCCCcCchhhHHHHHHHHhcCCCCCccccccccc----------ccc--------------ccCC---------C-CCCc
Q psy4039         432 VNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY----------EVN--------------ALPQ---------L-NTNV  477 (588)
Q Consensus       432 ~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~----------~~~--------------~~~~---------~-~~~~  477 (588)
                       .+.++||||||+++|||++|..||.+.......          ...              ..+.         + +...
T Consensus       201 -~~~~~Di~slG~~l~el~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  279 (310)
T cd07865         201 -YGPPIDMWGAGCIMAEMWTRSPIMQGNTEQHQLTLISQLCGSITPEVWPGVDKLELFKKMELPQGQKRKVKERLKPYVK  279 (310)
T ss_pred             -cCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhcccccchhhhhhccCCCccchhhHHhcccccC
Confidence             346899999999999999999998653211000          000              0000         0 1123


Q ss_pred             cHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccc
Q psy4039         478 PEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWL  517 (588)
Q Consensus       478 ~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~  517 (588)
                      +..+.++|.+||..||++|||++++++         |||+
T Consensus       280 ~~~~~dli~~~l~~~P~~R~t~~e~l~---------h~~f  310 (310)
T cd07865         280 DPHALDLIDKLLVLDPAKRIDADTALN---------HDFF  310 (310)
T ss_pred             CHHHHHHHHHHhcCChhhccCHHHHhc---------CCCC
Confidence            567889999999999999999999999         9996

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=100.00  E-value=2.7e-38  Score=319.59  Aligned_cols=250  Identities=24%  Similarity=0.292  Sum_probs=195.2

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      .++|.+.+.||+|+||.||+|.+.  ++.||+|.++.....                 ....+.+|+.+++.+    +||
T Consensus         8 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~-----------------~~~~~~~e~~~~~~l----~h~   66 (267)
T cd06645           8 QEDFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGE-----------------DFAVVQQEIIMMKDC----KHS   66 (267)
T ss_pred             HHHHHHHHHhCCCCCeEEEEEEEcCCCcEEEEEEEecCchh-----------------HHHHHHHHHHHHHhC----CCC
Confidence            368899999999999999999985  789999998532110                 112345688888887    999


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLE  351 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~  351 (588)
                      ||+++++++.+..                            ..+++|||+ +++|.+++...+ .+++.++..++.|++.
T Consensus        67 ~ii~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~i~~  117 (267)
T cd06645          67 NIVAYFGSYLRRD----------------------------KLWICMEFCGGGSLQDIYHVTG-PLSESQIAYVSRETLQ  117 (267)
T ss_pred             CeeeEEEEEEeCC----------------------------EEEEEEeccCCCcHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence            9999999887632                            489999999 579999987654 7999999999999999


Q ss_pred             HHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccC
Q psy4039         352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF  431 (588)
Q Consensus       352 gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~  431 (588)
                      ||.|||++||+|+||||+||+++.+     +.++|+|||++........     ......||+.|+|||++......   
T Consensus       118 ~l~~lH~~~i~H~dlkp~nili~~~-----~~~~l~dfg~~~~~~~~~~-----~~~~~~~~~~y~aPE~~~~~~~~---  184 (267)
T cd06645         118 GLYYLHSKGKMHRDIKGANILLTDN-----GHVKLADFGVSAQITATIA-----KRKSFIGTPYWMAPEVAAVERKG---  184 (267)
T ss_pred             HHHHHHHCCeecCCCCHHHEEECCC-----CCEEECcceeeeEccCccc-----ccccccCcccccChhhhccccCC---
Confidence            9999999999999999999999877     7899999999876543211     11245689999999998532110   


Q ss_pred             CCCCcCchhhHHHHHHHHhcCCCCCcccccccccc----ccc-cCCC--CCCccHHHHHHHHHhhhhCCCCCCCHHHHHH
Q psy4039         432 VNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE----VNA-LPQL--NTNVPEVMRRLVAKLLENDPSDRPSAELAAT  504 (588)
Q Consensus       432 ~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~----~~~-~~~~--~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~  504 (588)
                      ..+.++|||||||++|||++|..||..........    ... .+..  ...++..+.+++.+||+.||++|||++++++
T Consensus       185 ~~~~~~DvwSlG~il~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~ll~  264 (267)
T cd06645         185 GYNQLCDIWAVGITAIELAELQPPMFDLHPMRALFLMTKSNFQPPKLKDKMKWSNSFHHFVKMALTKNPKKRPTAEKLLQ  264 (267)
T ss_pred             CCCchhhhHHHHHHHHHHhcCCCCcccccchhhHHhhhccCCCCCcccccCCCCHHHHHHHHHHccCCchhCcCHHHHhc
Confidence            13468999999999999999999986532111110    011 1111  1246788999999999999999999999998


Q ss_pred             HHhhhhhcCCcc
Q psy4039         505 VCQLYLWAPKHW  516 (588)
Q Consensus       505 ~L~~~~~~~h~w  516 (588)
                               |||
T Consensus       265 ---------~~~  267 (267)
T cd06645         265 ---------HPF  267 (267)
T ss_pred             ---------CCC
Confidence                     998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=100.00  E-value=4.1e-38  Score=325.80  Aligned_cols=260  Identities=22%  Similarity=0.249  Sum_probs=201.1

Q ss_pred             CccccccCCeEEeeeecccCceeEEEEEEC---------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHH
Q psy4039         189 DVDDVKVDDIQIGKFIAKGTNAVVYEATFR---------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNED  259 (588)
Q Consensus       189 ~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~---------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei  259 (588)
                      ..+++..++|.+++.||+|+||.||++.+.         ...||+|.+.....   .             .....+.+|+
T Consensus        11 ~~~~~~~~~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~---~-------------~~~~~~~~e~   74 (307)
T cd05098          11 PRWEVPRDRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDAT---E-------------KDLSDLISEM   74 (307)
T ss_pred             CcceeehHHeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCC---h-------------HHHHHHHHHH
Confidence            356666789999999999999999999864         24699999853210   0             0123455688


Q ss_pred             HHHhhhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc----
Q psy4039         260 MLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC----  334 (588)
Q Consensus       260 ~il~~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~----  334 (588)
                      .+++.+   .+||||+++++++.+..                            ..|+||||+ +|+|.+++..+.    
T Consensus        75 ~~l~~l---~~h~~i~~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~i~~~~~~~~  123 (307)
T cd05098          75 EMMKMI---GKHKNIINLLGACTQDG----------------------------PLYVIVEYASKGNLREYLRARRPPGM  123 (307)
T ss_pred             HHHHHh---cCCCCEeeEEEEEecCC----------------------------ceEEEEecCCCCcHHHHHHhcCCccc
Confidence            888776   47999999999987632                            389999999 589999998642    


Q ss_pred             -----------CCCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCcccc
Q psy4039         335 -----------AQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQY  403 (588)
Q Consensus       335 -----------~~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~  403 (588)
                                 ..+++.++..++.|++.||+|||++|++||||||+|||++.+     +.+||+|||+++......... 
T Consensus       124 ~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~gi~H~dlkp~Nill~~~-----~~~kL~dfg~a~~~~~~~~~~-  197 (307)
T cd05098         124 EYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTED-----NVMKIADFGLARDIHHIDYYK-  197 (307)
T ss_pred             ccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCCcccccccHHheEEcCC-----CcEEECCCcccccccccchhh-
Confidence                       248899999999999999999999999999999999999987     789999999987654321111 


Q ss_pred             ccccccccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccH
Q psy4039         404 SSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPE  479 (588)
Q Consensus       404 ~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~  479 (588)
                        ......+++.|+|||++.+..      ++.++|||||||++|||++ |..||........   .........+..++.
T Consensus       198 --~~~~~~~~~~y~aPE~~~~~~------~~~~~DvwslG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (307)
T cd05098         198 --KTTNGRLPVKWMAPEALFDRI------YTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCTN  269 (307)
T ss_pred             --ccccCCCccceeChHHhccCC------CCcHHHHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHHHcCCCCCCCCcCCH
Confidence              111223457899999987654      4578999999999999998 8889865322111   112223345667889


Q ss_pred             HHHHHHHHhhhhCCCCCCCHHHHHHHHhhh
Q psy4039         480 VMRRLVAKLLENDPSDRPSAELAATVCQLY  509 (588)
Q Consensus       480 ~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~  509 (588)
                      ++++++.+||+.+|++|||+.++++.|+..
T Consensus       270 ~~~~li~~~l~~~p~~Rps~~evl~~l~~~  299 (307)
T cd05098         270 ELYMMMRDCWHAVPSQRPTFKQLVEDLDRI  299 (307)
T ss_pred             HHHHHHHHHcccChhhCcCHHHHHHHHHHH
Confidence            999999999999999999999999987754

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=7.8e-38  Score=319.36  Aligned_cols=251  Identities=20%  Similarity=0.243  Sum_probs=194.0

Q ss_pred             eEEeeeecccCceeEEEEEEC------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCC
Q psy4039         198 IQIGKFIAKGTNAVVYEATFR------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPH  271 (588)
Q Consensus       198 ~~~~~~IG~G~fG~Vy~a~~~------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~H  271 (588)
                      |++.+.||+|+||+||.+.+.      +..||+|.+......                .....+.+|+.+++.+    +|
T Consensus         6 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~----------------~~~~~~~~E~~~l~~l----~h   65 (283)
T cd05080           6 LKKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQ----------------QNTSGWKKEINILKTL----YH   65 (283)
T ss_pred             ceeceecccCCCcEEEEeeEccccCCCCceEEEEEeccccCh----------------HHHHHHHHHHHHHHhC----CC
Confidence            488999999999999887643      678999998532110                0123456789999887    99


Q ss_pred             CceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy4039         272 PNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLL  350 (588)
Q Consensus       272 pNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~  350 (588)
                      |||+++++++....                          ...++++|||+ +++|.+++...  .+++.+++.++.|++
T Consensus        66 ~~i~~~~~~~~~~~--------------------------~~~~~lv~e~~~~~~l~~~~~~~--~l~~~~~~~i~~~l~  117 (283)
T cd05080          66 ENIVKYKGCCSEQG--------------------------GKGLQLIMEYVPLGSLRDYLPKH--KLNLAQLLLFAQQIC  117 (283)
T ss_pred             CCEeeEEEEEecCC--------------------------CceEEEEecCCCCCCHHHHHHHc--CCCHHHHHHHHHHHH
Confidence            99999999876521                          12489999999 57999999775  799999999999999


Q ss_pred             HHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCcc
Q psy4039         351 EGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFS  430 (588)
Q Consensus       351 ~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~  430 (588)
                      .||.|||+++|+||||||+|||++.+     +.++|+|||+++....+....  .......++..|+|||++.+..    
T Consensus       118 ~~l~~lH~~~i~H~dlkp~Nili~~~-----~~~~l~dfg~~~~~~~~~~~~--~~~~~~~~~~~~~~PE~~~~~~----  186 (283)
T cd05080         118 EGMAYLHSQHYIHRDLAARNVLLDND-----RLVKIGDFGLAKAVPEGHEYY--RVREDGDSPVFWYAVECLKENK----  186 (283)
T ss_pred             HHHHHHHHCCeeccccChheEEEcCC-----CcEEEeecccccccCCcchhh--ccCCCCCCCceeeCHhHhcccC----
Confidence            99999999999999999999999887     789999999998765422110  0011234667899999986554    


Q ss_pred             CCCCCcCchhhHHHHHHHHhcCCCCCccccccc---------c---------ccccccCCCCCCccHHHHHHHHHhhhhC
Q psy4039         431 FVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNT---------D---------YEVNALPQLNTNVPEVMRRLVAKLLEND  492 (588)
Q Consensus       431 ~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~---------~---------~~~~~~~~~~~~~~~~l~~Li~~~L~~d  492 (588)
                        .+.++|||||||++|||++|..||.......         .         ......++.+..+|.++.+++.+||+.|
T Consensus       187 --~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~  264 (283)
T cd05080         187 --FSYASDVWSFGVTLYELLTHCDSKQSPPKKFEEMIGPKQGQMTVVRLIELLERGMRLPCPKNCPQEVYILMKNCWETE  264 (283)
T ss_pred             --CCcccccHHHHHHHHHHHhCCCCCCCCcchhhhhhcccccccchhhhhhhhhcCCCCCCCCCCCHHHHHHHHHHhccC
Confidence              4578999999999999999999985421100         0         0001122345678899999999999999


Q ss_pred             CCCCCCHHHHHHHHhhh
Q psy4039         493 PSDRPSAELAATVCQLY  509 (588)
Q Consensus       493 P~~Rps~~e~l~~L~~~  509 (588)
                      |++|||++++++.++.+
T Consensus       265 p~~Rps~~~i~~~l~~~  281 (283)
T cd05080         265 AKFRPTFRSLIPILKEM  281 (283)
T ss_pred             hhhCCCHHHHHHHHHHh
Confidence            99999999999977643

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=100.00  E-value=4e-38  Score=320.99  Aligned_cols=252  Identities=24%  Similarity=0.271  Sum_probs=198.5

Q ss_pred             CeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCce
Q psy4039         197 DIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNV  274 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNI  274 (588)
                      +|++.+.||+|+||.||+|.+.  +..||||++.......               .....+.+|+.+++.+    +||||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~---------------~~~~~~~~e~~~l~~~----~~~~i   61 (286)
T cd07832           1 RYKILGRIGEGAHGIVFKAKDRETGETVALKKVALRRLEG---------------GIPNQALREIKALQAC----QHPYV   61 (286)
T ss_pred             CceEEeecccCCCcEEEEEEECCCCceEEEEEEEcccccc---------------hhhHHHHHHHHHHHhC----CCCCC
Confidence            5889999999999999999986  7899999985432111               1223456788899887    79999


Q ss_pred             EEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy4039         275 VVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVT  354 (588)
Q Consensus       275 V~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~  354 (588)
                      +++++++.+..                            ..++||||++++|.+++......+++.+++.++.|+++||.
T Consensus        62 ~~~~~~~~~~~----------------------------~~~~v~e~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~  113 (286)
T cd07832          62 VKLLDVFPHGS----------------------------GFVLVMEYMPSDLSEVLRDEERPLPEAQVKSYMRMLLKGVA  113 (286)
T ss_pred             cceeeEEecCC----------------------------eeEEEecccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence            99999987632                            48999999988999999876557999999999999999999


Q ss_pred             HHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCC
Q psy4039         355 HLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY  434 (588)
Q Consensus       355 yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~  434 (588)
                      |||+.+|+|+||||+||+++.+     +.++|+|||++...........    ....|+..|+|||++.+...     .+
T Consensus       114 ~lH~~~i~H~dl~p~ni~~~~~-----~~~~l~dfg~~~~~~~~~~~~~----~~~~~~~~y~aPE~~~~~~~-----~~  179 (286)
T cd07832         114 YMHANGIMHRDLKPANLLISAD-----GVLKIADFGLARLFSEEEPRLY----SHQVATRWYRAPELLYGARK-----YD  179 (286)
T ss_pred             HHHHCCeecCCcCHHHEEEcCC-----CcEEEeeeeecccccCCCCCcc----ccccCcccccCceeeecccc-----CC
Confidence            9999999999999999999987     7899999999987654321111    13468999999999864331     34


Q ss_pred             CcCchhhHHHHHHHHhcCCCCCcccccccc------------------------ccccc--------cCCCCCCccHHHH
Q psy4039         435 SKSDAWTAGTVAYEIFGHDNPFYQSARNTD------------------------YEVNA--------LPQLNTNVPEVMR  482 (588)
Q Consensus       435 ~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~------------------------~~~~~--------~~~~~~~~~~~l~  482 (588)
                      .++||||+||++|||++|.+||.+......                        +....        ........+.++.
T Consensus       180 ~~~Di~slG~~l~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (286)
T cd07832         180 PGVDLWAVGCIFAELLNGSPLFPGENDIEQLAIVFRTLGTPNEETWPGLTSLPDYNKITFPESKPIPLEEIFPDASPEAL  259 (286)
T ss_pred             chhHHHHHHHHHHHHHcCCcCcCCCCHHHHHHHHHHHcCCCChHHHhhccCcchhhcccCCCCCcchHHHhCCCccHHHH
Confidence            689999999999999999888754321000                        00000        0011235678999


Q ss_pred             HHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCcccc
Q psy4039         483 RLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLY  518 (588)
Q Consensus       483 ~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~  518 (588)
                      +++.+||+.||++|||++++++         |||+.
T Consensus       260 ~li~~~l~~~p~~R~~~~~~l~---------h~~~~  286 (286)
T cd07832         260 DLLKGLLVYDPSKRLSAAEALR---------HPYFT  286 (286)
T ss_pred             HHHHHHhccChhhCCCHHHHhh---------CcCcC
Confidence            9999999999999999999999         99973

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=100.00  E-value=4.6e-38  Score=322.49  Aligned_cols=259  Identities=21%  Similarity=0.265  Sum_probs=201.2

Q ss_pred             CccccccCCeEEeeeecccCceeEEEEEEC-------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHH
Q psy4039         189 DVDDVKVDDIQIGKFIAKGTNAVVYEATFR-------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDML  261 (588)
Q Consensus       189 ~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~i  261 (588)
                      ..+.+..++|++.+.||+|+||.||++.+.       ...+|+|.+.....   ..             ....+.+|+.+
T Consensus         5 ~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~---~~-------------~~~~~~~E~~~   68 (293)
T cd05053           5 PEWELPRDRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDAT---EK-------------DLSDLVSEMEM   68 (293)
T ss_pred             cccccCHhHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCC---HH-------------HHHHHHHHHHH
Confidence            356677789999999999999999999875       26799999853211   00             11235568888


Q ss_pred             HhhhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh-------
Q psy4039         262 MNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER-------  333 (588)
Q Consensus       262 l~~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~-------  333 (588)
                      +..+   .+||||+++++++.+..                            .++++|||+ +|+|.+++...       
T Consensus        69 l~~l---~~h~~i~~~~~~~~~~~----------------------------~~~li~e~~~~~~L~~~l~~~~~~~~~~  117 (293)
T cd05053          69 MKMI---GKHKNIINLLGVCTQEG----------------------------PLYVVVEYAAHGNLRDFLRARRPPGEYA  117 (293)
T ss_pred             HHhh---cCCCCeeeEEEEEcCCC----------------------------CeEEEEEeCCCCcHHHHHHhcCCCcccc
Confidence            8776   47999999999987632                            389999999 68999999742       


Q ss_pred             --------cCCCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCcccccc
Q psy4039         334 --------CAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSS  405 (588)
Q Consensus       334 --------~~~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~  405 (588)
                              ...+++..+..++.|++.||.|||+++|+||||||+|||++.+     +.+||+|||+++.........   
T Consensus       118 ~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivH~dlkp~Nil~~~~-----~~~kL~Dfg~~~~~~~~~~~~---  189 (293)
T cd05053         118 SPDDPRPPEETLTQKDLVSFAYQVARGMEFLASKKCIHRDLAARNVLVTED-----HVMKIADFGLARDIHHIDYYR---  189 (293)
T ss_pred             ccccccccccccCHHHHHHHHHHHHHHHHHHHHCCccccccceeeEEEcCC-----CeEEeCcccccccccccccee---
Confidence                    2368999999999999999999999999999999999999887     789999999998765422111   


Q ss_pred             ccccccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCccccccccc---cccccCCCCCCccHHH
Q psy4039         406 ADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTDY---EVNALPQLNTNVPEVM  481 (588)
Q Consensus       406 ~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~~---~~~~~~~~~~~~~~~l  481 (588)
                      ......+++.|+|||++.+..      ++.++|||||||++|||++ |..||.........   .....+..+..++.++
T Consensus       190 ~~~~~~~~~~y~aPE~~~~~~------~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (293)
T cd05053         190 KTTNGRLPVKWMAPEALFDRV------YTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEELFKLLKEGYRMEKPQNCTQEL  263 (293)
T ss_pred             ccCCCCCCccccCHHHhccCC------cCcccceeehhhHHHHHhcCCCCCCCCCCHHHHHHHHHcCCcCCCCCCCCHHH
Confidence            111233567899999986554      4578999999999999997 99998764221111   1122334556788999


Q ss_pred             HHHHHHhhhhCCCCCCCHHHHHHHHhh
Q psy4039         482 RRLVAKLLENDPSDRPSAELAATVCQL  508 (588)
Q Consensus       482 ~~Li~~~L~~dP~~Rps~~e~l~~L~~  508 (588)
                      .+|+.+||..||++|||+.++++.|+.
T Consensus       264 ~~li~~~l~~~p~~Rps~~eil~~l~~  290 (293)
T cd05053         264 YHLMRDCWHEVPSQRPTFKQLVEDLDR  290 (293)
T ss_pred             HHHHHHHcccCcccCcCHHHHHHHHHH
Confidence            999999999999999999999997764

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=100.00  E-value=4.4e-38  Score=320.84  Aligned_cols=259  Identities=20%  Similarity=0.270  Sum_probs=198.4

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      +.|++.+.||.|+||.||+|.+.  ++.||+|.+.....                  ....+..|+.++..+   .+|||
T Consensus        16 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~~------------------~~~~~~~e~~~l~~~---~~h~~   74 (282)
T cd06636          16 GIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTED------------------EEEEIKLEINMLKKY---SHHRN   74 (282)
T ss_pred             hhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecChH------------------HHHHHHHHHHHHHHh---cCCCc
Confidence            77899999999999999999996  78999999843110                  112345577777776   47999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh-cCCCCHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER-CAQLSMHERVLLFTQLLE  351 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~-~~~l~~~~~~~i~~ql~~  351 (588)
                      |+++++++....+                      .+.....+++|||+ +|+|.+++... ...+++..+..++.|+++
T Consensus        75 i~~~~~~~~~~~~----------------------~~~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~  132 (282)
T cd06636          75 IATYYGAFIKKSP----------------------PGHDDQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILR  132 (282)
T ss_pred             EEEEeeehhcccc----------------------cCCCCEEEEEEEeCCCCcHHHHHHHccCCCCCHHHHHHHHHHHHH
Confidence            9999999875321                      11233689999999 57999999864 346899999999999999


Q ss_pred             HHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccC
Q psy4039         352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF  431 (588)
Q Consensus       352 gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~  431 (588)
                      ||.|||+++|+||||||+||+++.+     +.++|+|||++........     ......|++.|+|||++...... ..
T Consensus       133 al~~LH~~~ivH~dl~~~nili~~~-----~~~~l~dfg~~~~~~~~~~-----~~~~~~~~~~y~aPE~l~~~~~~-~~  201 (282)
T cd06636         133 GLAHLHAHKVIHRDIKGQNVLLTEN-----AEVKLVDFGVSAQLDRTVG-----RRNTFIGTPYWMAPEVIACDENP-DA  201 (282)
T ss_pred             HHHHHHHCCcccCCCCHHHEEECCC-----CCEEEeeCcchhhhhcccc-----CCCcccccccccCHhhcCcccCc-Cc
Confidence            9999999999999999999999987     7899999999876533111     11245689999999998643211 11


Q ss_pred             CCCCcCchhhHHHHHHHHhcCCCCCccccccccccc---c-ccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHh
Q psy4039         432 VNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV---N-ALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       432 ~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~---~-~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~  507 (588)
                      .++.++|||||||++|||++|..||...........   . ........+|.++.++|.+||+.||.+|||+.++++   
T Consensus       202 ~~~~~~DvwslG~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~ell~---  278 (282)
T cd06636         202 TYDYRSDIWSLGITAIEMAEGAPPLCDMHPMRALFLIPRNPPPKLKSKKWSKKFIDFIEGCLVKNYLSRPSTEQLLK---  278 (282)
T ss_pred             CCCcccchhHHHHHHHHHHhCCCCccccCHHhhhhhHhhCCCCCCcccccCHHHHHHHHHHhCCChhhCcCHHHHhc---
Confidence            245689999999999999999999976422211111   1 111123457899999999999999999999999999   


Q ss_pred             hhhhcCCccc
Q psy4039         508 LYLWAPKHWL  517 (588)
Q Consensus       508 ~~~~~~h~w~  517 (588)
                            |||+
T Consensus       279 ------~~~~  282 (282)
T cd06636         279 ------HPFI  282 (282)
T ss_pred             ------CCCC
Confidence                  9996

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=100.00  E-value=1.2e-37  Score=317.39  Aligned_cols=250  Identities=20%  Similarity=0.274  Sum_probs=193.6

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||.||+|++.  ++.||+|++......               ....+.+.+|+.+++.+    +|||
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~---------------~~~~~~~~~e~~~l~~~----~h~~   61 (286)
T cd07847           1 EKYEKLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDD---------------PVIKKIALREIRMLKQL----KHPN   61 (286)
T ss_pred             CceeeeeeecccCCeEEEEEEECCCCcEEEEEEEeecccC---------------ccccHHHHHHHHHHHhC----CCCC
Confidence            47899999999999999999986  789999998532110               01223456789999887    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCC-cHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNT-DLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~g-sL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++++.+..                            ..+++|||+++ +|..++.. ...+++.++..++.|++.|
T Consensus        62 i~~~~~~~~~~~----------------------------~~~~v~e~~~~~~l~~~~~~-~~~~~~~~~~~~~~ql~~~  112 (286)
T cd07847          62 LVNLIEVFRRKR----------------------------KLHLVFEYCDHTVLNELEKN-PRGVPEHLIKKIIWQTLQA  112 (286)
T ss_pred             EeeeeeEEeeCC----------------------------EEEEEEeccCccHHHHHHhC-CCCCCHHHHHHHHHHHHHH
Confidence            999999987632                            48999999964 55555443 3379999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||+++|+||||||+||+++.+     +.++|+|||++........     ......|+..|+|||++.+...     
T Consensus       113 l~~LH~~~i~H~dl~p~nil~~~~-----~~~~l~dfg~~~~~~~~~~-----~~~~~~~~~~~~aPE~~~~~~~-----  177 (286)
T cd07847         113 VNFCHKHNCIHRDVKPENILITKQ-----GQIKLCDFGFARILTGPGD-----DYTDYVATRWYRAPELLVGDTQ-----  177 (286)
T ss_pred             HHHHHHCCceecCCChhhEEEcCC-----CcEEECccccceecCCCcc-----cccCcccccccCCHHHHhCCCC-----
Confidence            999999999999999999999987     7899999999987644221     0113457889999999865321     


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcccccccc-----------------------c-cccccCC---------CCCCccH
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD-----------------------Y-EVNALPQ---------LNTNVPE  479 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~-----------------------~-~~~~~~~---------~~~~~~~  479 (588)
                      ++.++|||||||++|||++|..||.+......                       + .....+.         ....++.
T Consensus       178 ~~~~~Di~slG~i~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (286)
T cd07847         178 YGPPVDVWAIGCVFAELLTGQPLWPGKSDVDQLYLIRKTLGDLIPRHQQIFSTNQFFKGLSIPEPETREPLESKFPNISS  257 (286)
T ss_pred             cCchhhhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChHHhhhcccccccccccCCCcccccCHHHHhccCCH
Confidence            45689999999999999999999965321000                       0 0000000         1135678


Q ss_pred             HHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccc
Q psy4039         480 VMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWL  517 (588)
Q Consensus       480 ~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~  517 (588)
                      .+.+|+.+||+.||++||++.+++.         |||+
T Consensus       258 ~~~~li~~~l~~~p~~Rp~~~eil~---------~~~f  286 (286)
T cd07847         258 PALSFLKGCLQMDPTERLSCEELLE---------HPYF  286 (286)
T ss_pred             HHHHHHHHHhcCCccccCCHHHHhc---------CCCC
Confidence            8999999999999999999999999         9996

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=100.00  E-value=5.5e-38  Score=317.03  Aligned_cols=251  Identities=26%  Similarity=0.351  Sum_probs=197.4

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||.||+|++.  +..||||.+........              .....+.+|+.+++.+    +|||
T Consensus         2 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~--------------~~~~~~~~e~~~l~~l----~h~~   63 (267)
T cd08228           2 ANFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDA--------------KARQDCVKEIDLLKQL----NHPN   63 (267)
T ss_pred             cceeeeeeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCCH--------------HHHHHHHHHHHHHHhC----CCcc
Confidence            78999999999999999999985  78999998854221111              0223456789999887    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHH---hcCCCCHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRE---RCAQLSMHERVLLFTQL  349 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~---~~~~l~~~~~~~i~~ql  349 (588)
                      |+++++++.+..                            ..+++|||+ +++|.+++..   ....+++..+..++.|+
T Consensus        64 i~~~~~~~~~~~----------------------------~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i  115 (267)
T cd08228          64 VIKYLDSFIEDN----------------------------ELNIVLELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQL  115 (267)
T ss_pred             eeeeeeeEEECC----------------------------eEEEEEEecCCCcHHHHHHHhhhccCCCCHHHHHHHHHHH
Confidence            999999887632                            489999999 5799988864   23358999999999999


Q ss_pred             HHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCc
Q psy4039         350 LEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF  429 (588)
Q Consensus       350 ~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~  429 (588)
                      +.||.|||+++|+||||||+||+++.+     +.++|+|||++........     ......|++.|+|||.+.+..   
T Consensus       116 ~~~l~~LH~~~i~H~dl~~~nil~~~~-----~~~~l~d~g~~~~~~~~~~-----~~~~~~~~~~~~aPE~~~~~~---  182 (267)
T cd08228         116 CSAVEHMHSRRVMHRDIKPANVFITAT-----GVVKLGDLGLGRFFSSKTT-----AAHSLVGTPYYMSPERIHENG---  182 (267)
T ss_pred             HHHHHHHhhCCeeCCCCCHHHEEEcCC-----CCEEECccccceeccchhH-----HHhcCCCCccccChhhhccCC---
Confidence            999999999999999999999999887     7899999999887543211     111346889999999987654   


Q ss_pred             cCCCCCcCchhhHHHHHHHHhcCCCCCccccccc-c----ccccccCCC-CCCccHHHHHHHHHhhhhCCCCCCCHHHHH
Q psy4039         430 SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNT-D----YEVNALPQL-NTNVPEVMRRLVAKLLENDPSDRPSAELAA  503 (588)
Q Consensus       430 ~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~-~----~~~~~~~~~-~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l  503 (588)
                         .+.++||||||+++|||++|+.||....... .    ......++. ...++..+.+++.+||+.+|++||++.+++
T Consensus       183 ---~~~~~Di~slG~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~vl  259 (267)
T cd08228         183 ---YNFKSDIWSLGCLLYEMAALQSPFYGDKMNLFSLCQKIEQCDYPPLPTEHYSEKLRELVSMCIYPDPDQRPDIGYVH  259 (267)
T ss_pred             ---CCchhhHHHHHHHHHHHhcCCCCCccccccHHHHHHHHhcCCCCCCChhhcCHHHHHHHHHHCCCCcccCcCHHHHH
Confidence               3467999999999999999999997642211 1    111122222 345778899999999999999999999999


Q ss_pred             HHHhh
Q psy4039         504 TVCQL  508 (588)
Q Consensus       504 ~~L~~  508 (588)
                      +.++.
T Consensus       260 ~~~~~  264 (267)
T cd08228         260 QIAKQ  264 (267)
T ss_pred             HHHHH
Confidence            87763

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=100.00  E-value=6.1e-38  Score=314.15  Aligned_cols=246  Identities=22%  Similarity=0.289  Sum_probs=200.1

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||.||+|.+.  +..||+|.+....                   ....+.+|+.+++.+    +|||
T Consensus         3 ~~y~~~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~-------------------~~~~~~~e~~~~~~l----~~~~   59 (256)
T cd06612           3 EVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEE-------------------DLQEIIKEISILKQC----DSPY   59 (256)
T ss_pred             ccchhhhhhcCCCCeEEEEEEEcCCCcEEEEEEeecHH-------------------HHHHHHHHHHHHHhC----CCCc
Confidence            78999999999999999999997  6899999984210                   024566789998887    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++++.+..                            ..|+++||+ +++|.+++......+++..+..++.|+++|
T Consensus        60 i~~~~~~~~~~~----------------------------~~~l~~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~l~~~  111 (256)
T cd06612          60 IVKYYGSYFKNT----------------------------DLWIVMEYCGAGSVSDIMKITNKTLTEEEIAAILYQTLKG  111 (256)
T ss_pred             EeeeeeeeecCC----------------------------cEEEEEecCCCCcHHHHHHhCccCCCHHHHHHHHHHHHHH
Confidence            999999987632                            489999999 579999998766689999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||+.+|+||||+|+||+++.+     +.++|+|||++........     ......|+..|+|||++.+..      
T Consensus       112 l~~lh~~~i~H~dl~~~ni~~~~~-----~~~~l~dfg~~~~~~~~~~-----~~~~~~~~~~y~~PE~~~~~~------  175 (256)
T cd06612         112 LEYLHSNKKIHRDIKAGNILLNEE-----GQAKLADFGVSGQLTDTMA-----KRNTVIGTPFWMAPEVIQEIG------  175 (256)
T ss_pred             HHHHHHCCcccCCCCcceEEECCC-----CcEEEcccccchhcccCcc-----ccccccCCccccCHHHHhcCC------
Confidence            999999999999999999999987     7899999999987644221     111345889999999987654      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCccccccccccc-----cccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHh
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV-----NALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~-----~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~  507 (588)
                      .+.++|||||||++|+|++|+.||...........     ......+..++.++.+++.+||+.||++|||+++++.   
T Consensus       176 ~~~~~Di~s~G~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~~il~---  252 (256)
T cd06612         176 YNNKADIWSLGITAIEMAEGKPPYSDIHPMRAIFMIPNKPPPTLSDPEKWSPEFNDFVKKCLVKDPEERPSAIQLLQ---  252 (256)
T ss_pred             CCchhhHHHHHHHHHHHHhCCCCCCCcchhhhhhhhccCCCCCCCchhhcCHHHHHHHHHHHhcChhhCcCHHHHhc---
Confidence            45789999999999999999999976322111110     1111223457789999999999999999999999999   


Q ss_pred             hhhhcCCccc
Q psy4039         508 LYLWAPKHWL  517 (588)
Q Consensus       508 ~~~~~~h~w~  517 (588)
                            |||+
T Consensus       253 ------~~~~  256 (256)
T cd06612         253 ------HPFI  256 (256)
T ss_pred             ------CCCC
Confidence                  9996

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=100.00  E-value=4.1e-38  Score=325.54  Aligned_cols=261  Identities=22%  Similarity=0.268  Sum_probs=200.3

Q ss_pred             cccCCeEEeeeecccCceeEEEEEEC--Ce--eEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCC
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFR--GV--EYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENL  268 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~--~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l  268 (588)
                      +.+++|++.+.||+|+||.||+|.++  +.  .+|+|.+.....                ......+.+|+.++.++   
T Consensus         4 ~~~~~~~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~----------------~~~~~~~~~Ei~~l~~l---   64 (303)
T cd05088           4 LEWNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYAS----------------KDDHRDFAGELEVLCKL---   64 (303)
T ss_pred             cchhhceeeeeecCCCCceEEEEEEccCCceeeEEEEEecccCC----------------HHHHHHHHHHHHHHHHh---
Confidence            45689999999999999999999975  33  567777642110                00223456688888776   


Q ss_pred             CCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc-------------
Q psy4039         269 PPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC-------------  334 (588)
Q Consensus       269 ~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~-------------  334 (588)
                      .+||||+++++++.+..                            ..|++|||+ +++|.+++....             
T Consensus        65 ~~h~~iv~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~  116 (303)
T cd05088          65 GHHPNIINLLGACEHRG----------------------------YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANS  116 (303)
T ss_pred             cCCCCcceEEEEECCCC----------------------------CceEEEEeCCCCcHHHHHHhccccccccccccccc
Confidence            57999999999987531                            389999999 689999997542             


Q ss_pred             --CCCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccC
Q psy4039         335 --AQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGG  412 (588)
Q Consensus       335 --~~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~G  412 (588)
                        ..+++.+++.++.|++.||+|||++||+||||||+|||++.+     +.+||+|||+++.......      .....+
T Consensus       117 ~~~~l~~~~~~~~~~qi~~al~~LH~~gi~H~dlkp~Nili~~~-----~~~kl~dfg~~~~~~~~~~------~~~~~~  185 (303)
T cd05088         117 TASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGEN-----YVAKIADFGLSRGQEVYVK------KTMGRL  185 (303)
T ss_pred             ccCcCCHHHHHHHHHHHHHHHHHHHhCCccccccchheEEecCC-----CcEEeCccccCcccchhhh------cccCCC
Confidence              257899999999999999999999999999999999999987     7899999999864322110      112234


Q ss_pred             CccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccccc---ccccCCCCCCccHHHHHHHHHh
Q psy4039         413 NVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTDYE---VNALPQLNTNVPEVMRRLVAKL  488 (588)
Q Consensus       413 T~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~~~---~~~~~~~~~~~~~~l~~Li~~~  488 (588)
                      +..|+|||++.+..      .+.++|||||||++|||++ |..||..........   .......+..+++++.+++.+|
T Consensus       186 ~~~y~aPE~~~~~~------~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~  259 (303)
T cd05088         186 PVRWMAIESLNYSV------YTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRLEKPLNCDDEVYDLMRQC  259 (303)
T ss_pred             cccccCHHHHhccC------CcccccchhhhhHHHHHHhcCCCCcccCChHHHHHHHhcCCcCCCCCCCCHHHHHHHHHH
Confidence            67899999986654      4578999999999999998 999997542221111   1112234456789999999999


Q ss_pred             hhhCCCCCCCHHHHHHHHhhhhhcCCccc
Q psy4039         489 LENDPSDRPSAELAATVCQLYLWAPKHWL  517 (588)
Q Consensus       489 L~~dP~~Rps~~e~l~~L~~~~~~~h~w~  517 (588)
                      |+.+|++||++++++..+...++..+.|.
T Consensus       260 l~~~p~~Rp~~~~il~~l~~~~~~~~~~~  288 (303)
T cd05088         260 WREKPYERPSFAQILVSLNRMLEERKTYV  288 (303)
T ss_pred             cCCChhhCcCHHHHHHHHHHHHHhhhhhh
Confidence            99999999999999998887766555443

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=100.00  E-value=2.1e-38  Score=332.51  Aligned_cols=259  Identities=22%  Similarity=0.282  Sum_probs=199.2

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||.||+|.+.  ++.||||.+......                .....+.+|+.+++.+    +|||
T Consensus         5 ~~y~i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~----------------~~~~~~~~E~~~l~~l----~h~n   64 (336)
T cd07849           5 PRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQ----------------TFCQRTLREIKILRRF----KHEN   64 (336)
T ss_pred             cceEEEEEEEecCCeEEEEEEEcCCCCeEEEEEecccccc----------------hhHHHHHHHHHHHHhC----CCCC
Confidence            78999999999999999999886  789999998431110                0122345688899887    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      |+++++++....                       ......+|++|||+.++|.+++...  .+++..+..++.|+++||
T Consensus        65 iv~~~~~~~~~~-----------------------~~~~~~~~lv~e~~~~~l~~~~~~~--~l~~~~~~~i~~ql~~aL  119 (336)
T cd07849          65 IIGILDIIRPPS-----------------------FESFNDVYIVQELMETDLYKLIKTQ--HLSNDHIQYFLYQILRGL  119 (336)
T ss_pred             cCchhheeeccc-----------------------ccccceEEEEehhcccCHHHHHhcC--CCCHHHHHHHHHHHHHHH
Confidence            999999876531                       1122358999999998999888654  799999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN  433 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~  433 (588)
                      .|||++||+||||||+|||++.+     +.+||+|||+++........  ........||+.|+|||++.+...     .
T Consensus       120 ~~LH~~~ivH~dlkp~Nill~~~-----~~~kl~dfg~~~~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~-----~  187 (336)
T cd07849         120 KYIHSANVLHRDLKPSNLLLNTN-----CDLKICDFGLARIADPEHDH--TGFLTEYVATRWYRAPEIMLNSKG-----Y  187 (336)
T ss_pred             HHHHhCCeeccCCCHHHEEECCC-----CCEEECcccceeeccccccc--cCCcCCcCcCCCccChHHhhCCCC-----C
Confidence            99999999999999999999987     78999999999875432211  111124578999999998754321     3


Q ss_pred             CCcCchhhHHHHHHHHhcCCCCCccccccc---------------ccc-----------c--ccc-----CCCCCCccHH
Q psy4039         434 YSKSDAWTAGTVAYEIFGHDNPFYQSARNT---------------DYE-----------V--NAL-----PQLNTNVPEV  480 (588)
Q Consensus       434 ~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~---------------~~~-----------~--~~~-----~~~~~~~~~~  480 (588)
                      +.++||||+||++|+|++|+.||.+.....               ...           .  ...     ......++++
T Consensus       188 ~~~~DvwslGvil~el~~G~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (336)
T cd07849         188 TKAIDIWSVGCILAEMLSNRPLFPGKDYLHQLNLILGVLGTPSQEDLNCIISLRARNYIKSLPFKPKVPWNKLFPNADPK  267 (336)
T ss_pred             CcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHHhhchhhhhHHhhcCcCCcccHHHHhcccCcH
Confidence            468999999999999999999996531100               000           0  000     0011345788


Q ss_pred             HHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccCC
Q psy4039         481 MRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGA  520 (588)
Q Consensus       481 l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~  520 (588)
                      +.++|.+||+.||++|||+.++++         |||++..
T Consensus       268 ~~~li~~~l~~dP~~Rpt~~e~l~---------hp~~~~~  298 (336)
T cd07849         268 ALDLLDKMLTFNPHKRITVEEALA---------HPYLEQY  298 (336)
T ss_pred             HHHHHHHHcCCChhhCcCHHHHhc---------Ccccccc
Confidence            999999999999999999999999         9999844

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=4.6e-38  Score=319.31  Aligned_cols=255  Identities=20%  Similarity=0.253  Sum_probs=199.4

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEEC-------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHh
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATFR-------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMN  263 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~  263 (588)
                      |++..++|.+.+.||+|+||.||+|.+.       +..||+|.+....   ...             ....+.+|+.+++
T Consensus         1 ~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~---~~~-------------~~~~~~~e~~~l~   64 (277)
T cd05032           1 WELPREKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENA---SMR-------------ERIEFLNEASVMK   64 (277)
T ss_pred             CccchHHeeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCcc---CHH-------------HHHHHHHHHHHHH
Confidence            4566789999999999999999999886       3679999974321   100             1123556888888


Q ss_pred             hhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc--------
Q psy4039         264 SVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC--------  334 (588)
Q Consensus       264 ~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~--------  334 (588)
                      .+    +||||+++++++.+..                            ..++||||+ +|+|.+++....        
T Consensus        65 ~~----~~~~i~~~~~~~~~~~----------------------------~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~  112 (277)
T cd05032          65 EF----NCHHVVRLLGVVSTGQ----------------------------PTLVVMELMAKGDLKSYLRSRRPEAENNPG  112 (277)
T ss_pred             hC----CCCceeEEEEEEcCCC----------------------------CcEEEEecCCCCCHHHHHHhcccchhhccC
Confidence            87    8999999999987632                            389999999 589999997531        


Q ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCC
Q psy4039         335 -AQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGN  413 (588)
Q Consensus       335 -~~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT  413 (588)
                       ..+++..+..++.|++.||.|||+.+|+||||||+|||++.+     +.+||+|||+++.........   ......+|
T Consensus       113 ~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~di~p~nill~~~-----~~~kl~dfg~~~~~~~~~~~~---~~~~~~~~  184 (277)
T cd05032         113 LGPPTLQKFIQMAAEIADGMAYLAAKKFVHRDLAARNCMVAED-----LTVKIGDFGMTRDIYETDYYR---KGGKGLLP  184 (277)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCCccccccChheEEEcCC-----CCEEECCcccchhhccCcccc---cCCCCCcc
Confidence             247888999999999999999999999999999999999988     889999999997654321111   11234578


Q ss_pred             ccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhh
Q psy4039         414 VALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLL  489 (588)
Q Consensus       414 ~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L  489 (588)
                      ..|+|||.+....      .+.++|||||||++||+++ |..||........   ......+..+..++.++.+++.+||
T Consensus       185 ~~y~aPE~~~~~~------~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l  258 (277)
T cd05032         185 VRWMAPESLKDGV------FTTKSDVWSFGVVLWEMATLAEQPYQGLSNEEVLKFVIDGGHLDLPENCPDKLLELMRMCW  258 (277)
T ss_pred             ccccCHHHHhcCC------CCcccchHHHHHHHHHhhccCCCCCccCCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHc
Confidence            8999999986544      4578999999999999998 8999865322111   1122334556778999999999999


Q ss_pred             hhCCCCCCCHHHHHHHHh
Q psy4039         490 ENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       490 ~~dP~~Rps~~e~l~~L~  507 (588)
                      +.+|++|||+.++++.|+
T Consensus       259 ~~~p~~Rpt~~~l~~~l~  276 (277)
T cd05032         259 QYNPKMRPTFLEIVSSLK  276 (277)
T ss_pred             CCChhhCCCHHHHHHHhc
Confidence            999999999999988654

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=100.00  E-value=7e-38  Score=316.78  Aligned_cols=256  Identities=21%  Similarity=0.240  Sum_probs=195.6

Q ss_pred             eEEeeeecccCceeEEEEEEC-----CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         198 IQIGKFIAKGTNAVVYEATFR-----GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       198 ~~~~~~IG~G~fG~Vy~a~~~-----g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      |++++.||+|+||.||+|.+.     +..||||.+......   ..            ....+.+|+.+++.+    +||
T Consensus         1 ~~~~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~---~~------------~~~~~~~e~~~l~~l----~h~   61 (273)
T cd05035           1 LKLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHT---YS------------EIEEFLSEAACMKDF----DHP   61 (273)
T ss_pred             CccccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcCC---HH------------HHHHHHHHHHHHHhC----CCC
Confidence            567889999999999999875     367999998532111   00            112356688888887    899


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh-----cCCCCHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER-----CAQLSMHERVLLF  346 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~-----~~~l~~~~~~~i~  346 (588)
                      ||+++++++.+..                      ........+++|||+ +|+|..++...     ...+++..+..++
T Consensus        62 ~iv~~~~~~~~~~----------------------~~~~~~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  119 (273)
T cd05035          62 NVMKLIGVCFEAS----------------------SLQKIPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFM  119 (273)
T ss_pred             CeeeEEeeeccCC----------------------ccccCcccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHH
Confidence            9999999876532                      111223479999999 68999998653     1368999999999


Q ss_pred             HHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCC
Q psy4039         347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP  426 (588)
Q Consensus       347 ~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~  426 (588)
                      .|++.||.|||+++|+||||||+||+++++     +.+||+|||+++..........   .....++..|+|||++.+..
T Consensus       120 ~~i~~aL~~lH~~~i~H~dlkp~Nil~~~~-----~~~kl~dfg~~~~~~~~~~~~~---~~~~~~~~~~~~pe~~~~~~  191 (273)
T cd05035         120 VDIALGMEYLSNRNFIHRDLAARNCMLRED-----MTVCVADFGLSKKIYSGDYYRQ---GRIAKMPVKWIAIESLADRV  191 (273)
T ss_pred             HHHHHHHHHHHhCCeeccccchheEEECCC-----CeEEECCccceeeccccccccc---cccccCCccccCHhhcccCC
Confidence            999999999999999999999999999987     7899999999987544221111   11233567899999986554


Q ss_pred             CCccCCCCCcCchhhHHHHHHHHhc-CCCCCccccccccc---cccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHH
Q psy4039         427 GLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTDY---EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA  502 (588)
Q Consensus       427 ~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~~---~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~  502 (588)
                            .+.++|||||||++|||++ |..||.+.......   .....+..+..+++++.+++.+||+.||.+|||+.++
T Consensus       192 ------~~~~~Dv~SlG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~e~  265 (273)
T cd05035         192 ------YTSKSDVWAFGVTMWEIATRGQTPYPGVENHEIYDYLRHGNRLKQPEDCLDELYDLMYSCWRADPKDRPTFTKL  265 (273)
T ss_pred             ------CCcccchHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCcCCCHHHHHHHHHHcCCChhhCcCHHHH
Confidence                  4578999999999999999 88998663221111   1122334567789999999999999999999999999


Q ss_pred             HHHHhh
Q psy4039         503 ATVCQL  508 (588)
Q Consensus       503 l~~L~~  508 (588)
                      +..|+.
T Consensus       266 ~~~l~~  271 (273)
T cd05035         266 REVLEN  271 (273)
T ss_pred             HHHHHh
Confidence            997764

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=100.00  E-value=2.2e-38  Score=322.23  Aligned_cols=252  Identities=20%  Similarity=0.246  Sum_probs=197.8

Q ss_pred             ccCCeEEeeeecccCceeEEEEEEC-------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhc
Q psy4039         194 KVDDIQIGKFIAKGTNAVVYEATFR-------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVE  266 (588)
Q Consensus       194 ~~~~~~~~~~IG~G~fG~Vy~a~~~-------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~  266 (588)
                      ..++|.+.+.||+|+||.||+|.+.       +..||||.+.....   .             ...+.+.+|+.+++.+ 
T Consensus         3 ~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~---~-------------~~~~~~~~e~~~l~~l-   65 (280)
T cd05049           3 QRDTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETAS---N-------------DARKDFEREAELLTNF-   65 (280)
T ss_pred             ChHHhhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCC---H-------------HHHHHHHHHHHHHHhc-
Confidence            3477899999999999999999874       46899999843211   0             0124566789999887 


Q ss_pred             CCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc-----------
Q psy4039         267 NLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC-----------  334 (588)
Q Consensus       267 ~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~-----------  334 (588)
                         +||||+++++++.+.                            ...+++|||+ +++|.+++...+           
T Consensus        66 ---~~~~i~~~~~~~~~~----------------------------~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~  114 (280)
T cd05049          66 ---QHENIVKFYGVCTEG----------------------------DPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDS  114 (280)
T ss_pred             ---CCCCchheeeEEecC----------------------------CCeEEEEecCCCCCHHHHHHhcCCchhhhccccc
Confidence               899999999998763                            1489999999 689999997542           


Q ss_pred             --CCCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccC
Q psy4039         335 --AQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGG  412 (588)
Q Consensus       335 --~~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~G  412 (588)
                        ..+++.++..++.|++.||.|||++||+||||||+||+++.+     +.+||+|||+++.........   ......+
T Consensus       115 ~~~~l~~~~~~~~~~~i~~~l~~lH~~~i~h~dlkp~nili~~~-----~~~kl~d~g~~~~~~~~~~~~---~~~~~~~  186 (280)
T cd05049         115 PMGELTLSQLLQIAVQIASGMVYLASQHFVHRDLATRNCLVGYD-----LVVKIGDFGMSRDVYTTDYYR---VGGHTML  186 (280)
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHhhCCeeccccccceEEEcCC-----CeEEECCcccceecccCccee---cCCCCcc
Confidence              247899999999999999999999999999999999999988     899999999997643321111   1113346


Q ss_pred             CccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCccccccccc---cccccCCCCCCccHHHHHHHHHh
Q psy4039         413 NVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTDY---EVNALPQLNTNVPEVMRRLVAKL  488 (588)
Q Consensus       413 T~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~~---~~~~~~~~~~~~~~~l~~Li~~~  488 (588)
                      ++.|+|||++.+..      ++.++|||||||++|||++ |..||.........   .....+..+..++..+++++.+|
T Consensus       187 ~~~y~aPE~~~~~~------~~~~~Di~slG~il~e~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~  260 (280)
T cd05049         187 PIRWMPPESIMYRK------FTTESDVWSFGVVLWEIFTYGKQPWYGLSNEEVIECITQGRLLQRPRTCPSEVYDIMLGC  260 (280)
T ss_pred             cceecChhhhccCC------cchhhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHH
Confidence            78999999997655      4578999999999999998 99998763222111   12223344567899999999999


Q ss_pred             hhhCCCCCCCHHHHHHHHh
Q psy4039         489 LENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       489 L~~dP~~Rps~~e~l~~L~  507 (588)
                      |+.||++||++.++++.|+
T Consensus       261 l~~~p~~Rp~~~eil~~l~  279 (280)
T cd05049         261 WKRDPQQRINIKDIHERLQ  279 (280)
T ss_pred             cCCCcccCCCHHHHHHHhh
Confidence            9999999999999988654

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=100.00  E-value=5.8e-38  Score=320.15  Aligned_cols=254  Identities=22%  Similarity=0.233  Sum_probs=197.4

Q ss_pred             eEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceE
Q psy4039         198 IQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVV  275 (588)
Q Consensus       198 ~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV  275 (588)
                      |++.+.||+|+||.||+|.+.  +..+|+|.+....     ..            ....+.+|+.+++.+    +||||+
T Consensus         7 ~~i~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~-----~~------------~~~~~~~e~~~l~~l----~h~~ii   65 (282)
T cd06643           7 WEIIGELGDGAFGKVYKAQNKETGVLAAAKVIDTKS-----EE------------ELEDYMVEIDILASC----DHPNIV   65 (282)
T ss_pred             HHHHhhcccCCCeEEEEEEECCCCeEEEEEEeCCCC-----HH------------HHHHHHHHHHHHHHC----CCCCee
Confidence            577888999999999999997  6788999984211     00            123455688888887    999999


Q ss_pred             EEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy4039         276 VMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVT  354 (588)
Q Consensus       276 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~  354 (588)
                      +++++|.+..                            ..++||||+ +++|..++......+++..+..++.|+++||.
T Consensus        66 ~~~~~~~~~~----------------------------~~~~v~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~qi~~~L~  117 (282)
T cd06643          66 KLLDAFYYEN----------------------------NLWILIEFCAGGAVDAVMLELERPLTEPQIRVVCKQTLEALN  117 (282)
T ss_pred             eEEEEEeeCC----------------------------EEEEEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence            9999887631                            489999999 57898888765457999999999999999999


Q ss_pred             HHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCC
Q psy4039         355 HLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY  434 (588)
Q Consensus       355 yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~  434 (588)
                      |||+.||+||||||+|||++.+     +.++|+|||++........     ......||+.|+|||++...... ...++
T Consensus       118 ~LH~~~i~H~dlkp~nili~~~-----~~~kl~dfg~~~~~~~~~~-----~~~~~~~~~~y~aPE~~~~~~~~-~~~~~  186 (282)
T cd06643         118 YLHENKIIHRDLKAGNILFTLD-----GDIKLADFGVSAKNTRTIQ-----RRDSFIGTPYWMAPEVVMCETSK-DRPYD  186 (282)
T ss_pred             HHHHCCeeecCCCcccEEEccC-----CCEEEcccccccccccccc-----ccccccccccccCHhhccccCCC-CCCCC
Confidence            9999999999999999999887     7899999999876433211     11135689999999998533211 11144


Q ss_pred             CcCchhhHHHHHHHHhcCCCCCccccccccc---ccc--ccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhh
Q psy4039         435 SKSDAWTAGTVAYEIFGHDNPFYQSARNTDY---EVN--ALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLY  509 (588)
Q Consensus       435 ~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~---~~~--~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~  509 (588)
                      .++|||||||++|||++|.+||.........   ...  .....+..++.+++++|.+||+.||++||+++++++     
T Consensus       187 ~~~Dv~slGvil~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~-----  261 (282)
T cd06643         187 YKADVWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSEPPTLAQPSRWSSEFKDFLKKCLEKNVDARWTTTQLLQ-----  261 (282)
T ss_pred             ccchhhhHHHHHHHHccCCCCccccCHHHHHHHHhhcCCCCCCCccccCHHHHHHHHHHccCChhhCcCHHHHhc-----
Confidence            6899999999999999999999753221111   001  111234568899999999999999999999999998     


Q ss_pred             hhcCCccccCC
Q psy4039         510 LWAPKHWLYGA  520 (588)
Q Consensus       510 ~~~~h~w~~~~  520 (588)
                          |||+...
T Consensus       262 ----~~~~~~~  268 (282)
T cd06643         262 ----HPFVTVN  268 (282)
T ss_pred             ----CCCEecc
Confidence                9999843

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=100.00  E-value=5e-38  Score=318.16  Aligned_cols=256  Identities=21%  Similarity=0.296  Sum_probs=196.7

Q ss_pred             ccCCeEEeeeecccCceeEEEEEEC--C---eeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCC
Q psy4039         194 KVDDIQIGKFIAKGTNAVVYEATFR--G---VEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENL  268 (588)
Q Consensus       194 ~~~~~~~~~~IG~G~fG~Vy~a~~~--g---~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l  268 (588)
                      ...+|++.+.||+|+||.||+|.+.  +   ..||||++....   ..             .....+..|+.+++.+   
T Consensus         2 ~~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~---~~-------------~~~~~~~~e~~~l~~l---   62 (269)
T cd05065           2 DVSCVKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGY---TE-------------KQRRDFLSEASIMGQF---   62 (269)
T ss_pred             ChHHeEEEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCC---CH-------------HHHHHHHHHHHHHHhC---
Confidence            3467999999999999999999986  2   369999984321   10             0123466788888887   


Q ss_pred             CCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHH
Q psy4039         269 PPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFT  347 (588)
Q Consensus       269 ~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~  347 (588)
                       .||||+++++++.+..                            ..++||||+ +++|.+++......+++.+++.++.
T Consensus        63 -~h~ni~~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~  113 (269)
T cd05065          63 -DHPNIIHLEGVVTKSR----------------------------PVMIITEFMENGALDSFLRQNDGQFTVIQLVGMLR  113 (269)
T ss_pred             -CCcCcceEEEEECCCC----------------------------ceEEEEecCCCCcHHHHHhhCCCCCCHHHHHHHHH
Confidence             8999999999886532                            389999999 5799999987655799999999999


Q ss_pred             HHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCC
Q psy4039         348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG  427 (588)
Q Consensus       348 ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~  427 (588)
                      |++.||.|||++|++||||||+||+++.+     +.+||+|||+++..................++..|+|||++.+.. 
T Consensus       114 ~l~~al~~lH~~g~~H~dl~p~nili~~~-----~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~-  187 (269)
T cd05065         114 GIAAGMKYLSEMNYVHRDLAARNILVNSN-----LVCKVSDFGLSRFLEDDTSDPTYTSSLGGKIPIRWTAPEAIAYRK-  187 (269)
T ss_pred             HHHHHHHHHHHCCEeecccChheEEEcCC-----CcEEECCCccccccccCccccccccccCCCcceeecCHhHhccCc-
Confidence            99999999999999999999999999877     789999999987654422211111001111245799999987554 


Q ss_pred             CccCCCCCcCchhhHHHHHHHHhc-CCCCCccccccccc---cccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHH
Q psy4039         428 LFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTDY---EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAA  503 (588)
Q Consensus       428 ~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~~---~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l  503 (588)
                           .+.++|||||||++|||++ |..||.........   ......+.+..+|..+.+++.+||..+|++||++++++
T Consensus       188 -----~~~~~DvwslG~~l~e~l~~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~  262 (269)
T cd05065         188 -----FTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVINAIEQDYRLPPPMDCPTALHQLMLDCWQKDRNARPKFGQIV  262 (269)
T ss_pred             -----ccchhhhhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHHcCCcCCCcccCCHHHHHHHHHHcCCChhhCcCHHHHH
Confidence                 4568999999999999886 99999763221111   11112233467889999999999999999999999999


Q ss_pred             HHHhh
Q psy4039         504 TVCQL  508 (588)
Q Consensus       504 ~~L~~  508 (588)
                      ..|+.
T Consensus       263 ~~l~~  267 (269)
T cd05065         263 STLDK  267 (269)
T ss_pred             HHHHh
Confidence            87663

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=100.00  E-value=5.2e-38  Score=318.07  Aligned_cols=256  Identities=21%  Similarity=0.228  Sum_probs=192.6

Q ss_pred             eEEeeeecccCceeEEEEEEC--C--eeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         198 IQIGKFIAKGTNAVVYEATFR--G--VEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       198 ~~~~~~IG~G~fG~Vy~a~~~--g--~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      |.+++.||+|+||.||+|.+.  +  ..||||.++......   .            ..+.+.+|+.+++.+    +|||
T Consensus         1 ~~i~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~---~------------~~~~~~~E~~~l~~l----~h~~   61 (272)
T cd05075           1 LALGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTR---S------------EMEDFLSEAVCMKEF----DHPN   61 (272)
T ss_pred             CccccccCcccCceEEEeEEccCCCeeeEEEEecccCcCCH---H------------HHHHHHHHHHHHHhC----CCCC
Confidence            356789999999999999986  2  369999885321110   0            123455688888887    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh-----cCCCCHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER-----CAQLSMHERVLLFT  347 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~-----~~~l~~~~~~~i~~  347 (588)
                      |+++++++.....                      .......+++|||+ +|+|.+++...     ...+++..+..++.
T Consensus        62 iv~~~~~~~~~~~----------------------~~~~~~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (272)
T cd05075          62 VMRLIGVCLQTVE----------------------SEGYPSPVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMT  119 (272)
T ss_pred             cceEEEEEccCCc----------------------ccCCCCcEEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHH
Confidence            9999998765321                      01112378999999 58999988532     23589999999999


Q ss_pred             HHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCC
Q psy4039         348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG  427 (588)
Q Consensus       348 ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~  427 (588)
                      |++.||.|||+++|+||||||+|||++.+     +.+||+|||+++....+....   ......+++.|+|||++.+.. 
T Consensus       120 ~i~~~l~~lH~~~i~H~dlkp~Nil~~~~-----~~~kl~Dfg~~~~~~~~~~~~---~~~~~~~~~~~~~pe~~~~~~-  190 (272)
T cd05075         120 DIASGMEYLSSKSFIHRDLAARNCMLNEN-----MNVCVADFGLSKKIYNGDYYR---QGRIAKMPVKWIAIESLADRV-  190 (272)
T ss_pred             HHHHHHHHHHHCCeeccccchhheEEcCC-----CCEEECCCCcccccCccccee---cCCcccCCcccCCHHHccCCC-
Confidence            99999999999999999999999999877     789999999998764422111   111234677899999987654 


Q ss_pred             CccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHH
Q psy4039         428 LFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAA  503 (588)
Q Consensus       428 ~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l  503 (588)
                           ++.++|||||||++|||++ |..||........   .........+..++..+.+++.+||+.||++|||+++++
T Consensus       191 -----~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l~  265 (272)
T cd05075         191 -----YTTKSDVWSFGVTMWEIATRGQTPYPGVENSEIYDYLRQGNRLKQPPDCLDGLYSLMSSCWLLNPKDRPSFETLR  265 (272)
T ss_pred             -----cChHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHH
Confidence                 4578999999999999999 7899865322111   111222344567889999999999999999999999999


Q ss_pred             HHHhh
Q psy4039         504 TVCQL  508 (588)
Q Consensus       504 ~~L~~  508 (588)
                      +.|+.
T Consensus       266 ~~l~~  270 (272)
T cd05075         266 CELEK  270 (272)
T ss_pred             HHHHh
Confidence            87663

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=100.00  E-value=1.3e-37  Score=319.04  Aligned_cols=260  Identities=24%  Similarity=0.291  Sum_probs=199.6

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      .++|.+.+.||+|+||.||++...  ++.+|+|.+....   .               ....+.+|+.+++.+   .+||
T Consensus        21 ~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~---~---------------~~~~~~~e~~~l~~l---~~h~   79 (291)
T cd06639          21 TDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPIS---D---------------VDEEIEAEYNILQSL---PNHP   79 (291)
T ss_pred             CCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEecccc---c---------------HHHHHHHHHHHHHHh---cCCC
Confidence            388999999999999999999986  7899999984311   0               112345677887776   5799


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHH---hcCCCCHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRE---RCAQLSMHERVLLFTQ  348 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~---~~~~l~~~~~~~i~~q  348 (588)
                      ||+++++++.....                       ......++||||+ +++|.++++.   ....+++..++.++.|
T Consensus        80 ni~~~~~~~~~~~~-----------------------~~~~~~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~q  136 (291)
T cd06639          80 NVVKFYGMFYKADK-----------------------LVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYG  136 (291)
T ss_pred             CeEEEEEEEEeccc-----------------------cCCCeeEEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHH
Confidence            99999999876321                       1122489999999 6799998864   2347899999999999


Q ss_pred             HHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCC
Q psy4039         349 LLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGL  428 (588)
Q Consensus       349 l~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~  428 (588)
                      ++.||.|||+.+|+||||||+||+++.+     +.+||+|||++.........     .....|+..|+|||++..... 
T Consensus       137 i~~al~~lH~~~ivH~dlkp~nili~~~-----~~~kl~dfg~~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~-  205 (291)
T cd06639         137 ALLGLQHLHNNRIIHRDVKGNNILLTTE-----GGVKLVDFGVSAQLTSTRLR-----RNTSVGTPFWMAPEVIACEQQ-  205 (291)
T ss_pred             HHHHHHHHHhCCeeccCCCHHHEEEcCC-----CCEEEeecccchhccccccc-----ccCccCCccccChhhhcCCCC-
Confidence            9999999999999999999999999887     78999999998765432111     113468899999999864321 


Q ss_pred             ccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccc---cccccC--CCCCCccHHHHHHHHHhhhhCCCCCCCHHHHH
Q psy4039         429 FSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY---EVNALP--QLNTNVPEVMRRLVAKLLENDPSDRPSAELAA  503 (588)
Q Consensus       429 ~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~---~~~~~~--~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l  503 (588)
                      .....+.++|||||||++|||++|+.||.........   .....+  ..+..++.++.++|.+||+.||++||++.+++
T Consensus       206 ~~~~~~~~~Di~slGvi~~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~il  285 (291)
T cd06639         206 YDYSYDARCDVWSLGITAIELGDGDPPLFDMHPVKTLFKIPRNPPPTLLHPEKWCRSFNHFISQCLIKDFEARPSVTHLL  285 (291)
T ss_pred             cccccCCccchHHHHHHHHHHhhCCCCCCCCcHHHHHHHHhcCCCCCCCcccccCHHHHHHHHHHhhcChhhCcCHHHHh
Confidence            1112457899999999999999999999763221111   111111  12345678899999999999999999999999


Q ss_pred             HHHhhhhhcCCcccc
Q psy4039         504 TVCQLYLWAPKHWLY  518 (588)
Q Consensus       504 ~~L~~~~~~~h~w~~  518 (588)
                      +         |||++
T Consensus       286 ~---------~~~~~  291 (291)
T cd06639         286 E---------HPFIK  291 (291)
T ss_pred             c---------CcccC
Confidence            9         99984

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=100.00  E-value=6.4e-38  Score=321.62  Aligned_cols=254  Identities=26%  Similarity=0.295  Sum_probs=199.3

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      +++|++.+.||.|+||.||+|.+.  ++.||||.++......               .....+.+|+.++..+    +||
T Consensus         4 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~---------------~~~~~~~~e~~~l~~l----~h~   64 (293)
T cd07843           4 VDEYEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKE---------------GFPITSLREINILLKL----QHP   64 (293)
T ss_pred             hhhhhhhhhhcCCCCeEEEEEEECCCCcEEEEEEEeeccccc---------------cchhhHHHHHHHHHhc----CCC
Confidence            378999999999999999999997  7899999985322110               0122345688888887    899


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      ||+++++++.+..                          ....|++|||++++|.+++......+++.++..++.|+++|
T Consensus        65 ni~~~~~~~~~~~--------------------------~~~~~lv~e~~~~~L~~~~~~~~~~l~~~~~~~i~~qi~~a  118 (293)
T cd07843          65 NIVTVKEVVVGSN--------------------------LDKIYMVMEYVEHDLKSLMETMKQPFLQSEVKCLMLQLLSG  118 (293)
T ss_pred             CEEEEEEEEEecC--------------------------CCcEEEEehhcCcCHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence            9999999887531                          12499999999889999998765579999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||+++|+||||||+|||++.+     +.++|+|||+++........     .....+++.|+|||++.+...     
T Consensus       119 L~~LH~~~i~H~dl~p~nili~~~-----~~~~l~d~g~~~~~~~~~~~-----~~~~~~~~~~~aPE~~~~~~~-----  183 (293)
T cd07843         119 VAHLHDNWILHRDLKTSNLLLNNR-----GILKICDFGLAREYGSPLKP-----YTQLVVTLWYRAPELLLGAKE-----  183 (293)
T ss_pred             HHHHHHCCeeeccCCHHHEEECCC-----CcEEEeecCceeeccCCccc-----cccccccccccCchhhcCCcc-----
Confidence            999999999999999999999987     78999999999876543211     113457889999999865432     


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCccccccccc-----------------------------cc----cccCCCCCC-cc
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY-----------------------------EV----NALPQLNTN-VP  478 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~-----------------------------~~----~~~~~~~~~-~~  478 (588)
                      .+.++||||+|+++|||++|.+||.........                             ..    .....++.. ++
T Consensus       184 ~~~~~Di~slG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (293)
T cd07843         184 YSTAIDMWSVGCIFAELLTKKPLFPGKSEIDQLNKIFKLLGTPTEKIWPGFSELPGAKKKTFTKYPYNQLRKKFPALSLS  263 (293)
T ss_pred             ccchhhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCchHHHHHhhccchhcccccccccchhhhccccccCCC
Confidence            346899999999999999999999653110000                             00    001112222 58


Q ss_pred             HHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccc
Q psy4039         479 EVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWL  517 (588)
Q Consensus       479 ~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~  517 (588)
                      +.+.++|++||+.||++|||+.|+++         |||+
T Consensus       264 ~~~~~li~~~l~~~p~~R~t~~ell~---------~~~f  293 (293)
T cd07843         264 DNGFDLLNRLLTYDPAKRISAEDALK---------HPYF  293 (293)
T ss_pred             hHHHHHHHHHhccCccccCCHHHHhc---------CCCC
Confidence            88999999999999999999999999         9996

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=100.00  E-value=1.4e-37  Score=317.61  Aligned_cols=260  Identities=21%  Similarity=0.253  Sum_probs=198.3

Q ss_pred             ccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCC
Q psy4039         194 KVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPH  271 (588)
Q Consensus       194 ~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~H  271 (588)
                      ..++|++.+.||+|+||.||+|.+.  +..||+|.+....   .               ....+.+|+.++..+   .+|
T Consensus        16 ~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~---~---------------~~~~~~~e~~~l~~l---~~h   74 (286)
T cd06638          16 PSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIH---D---------------IDEEIEAEYNILKAL---SDH   74 (286)
T ss_pred             cccceeeeeeeccCCCcEEEEEEECCCCceeEEEeecccc---c---------------hHHHHHHHHHHHHHH---hcC
Confidence            3488999999999999999999886  7899999874211   0               112345688888776   469


Q ss_pred             CceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh---cCCCCHHHHHHHHH
Q psy4039         272 PNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER---CAQLSMHERVLLFT  347 (588)
Q Consensus       272 pNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~---~~~l~~~~~~~i~~  347 (588)
                      |||+++++++....                       .......+++|||+ +++|.+++...   ...+++..+..++.
T Consensus        75 ~~i~~~~~~~~~~~-----------------------~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~  131 (286)
T cd06638          75 PNVVKFYGMYYKKD-----------------------VKNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILH  131 (286)
T ss_pred             CCeeeeeeeeeecc-----------------------cCCCCeEEEEEeecCCCCHHHHHHHhhccCccccHHHHHHHHH
Confidence            99999999886421                       11123599999999 67999988642   34689999999999


Q ss_pred             HHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCC
Q psy4039         348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG  427 (588)
Q Consensus       348 ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~  427 (588)
                      |+++||.|||+++|+||||||+||+++.+     +.++|+|||+++........     .....||+.|+|||++.....
T Consensus       132 ~i~~~l~~lH~~~i~H~dlkp~nili~~~-----~~~kl~dfg~~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~  201 (286)
T cd06638         132 EALMGLQHLHVNKTIHRDVKGNNILLTTE-----GGVKLVDFGVSAQLTSTRLR-----RNTSVGTPFWMAPEVIACEQQ  201 (286)
T ss_pred             HHHHHHHHHHhCCccccCCCHHhEEECCC-----CCEEEccCCceeecccCCCc-----cccccCCCcccChhhhchhhh
Confidence            99999999999999999999999999987     78999999999765432111     113468999999999864221


Q ss_pred             CccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccccc---ccc--cCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHH
Q psy4039         428 LFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE---VNA--LPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA  502 (588)
Q Consensus       428 ~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~---~~~--~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~  502 (588)
                       ....++.++||||+||++|||++|+.||..........   ...  ....+..++.++.+++.+||+.||++|||+.++
T Consensus       202 -~~~~~~~~~Dv~slGvi~~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~el  280 (286)
T cd06638         202 -LDSTYDARCDVWSLGITAIELGDGDPPLADLHPMRALFKIPRNPPPTLHQPELWSNEFNDFIRKCLTKDYEKRPTVSDL  280 (286)
T ss_pred             -ccccccchhhhhhHHHHHHHHhcCCCCCCCCchhHHHhhccccCCCcccCCCCcCHHHHHHHHHHccCCcccCCCHHHH
Confidence             11114578999999999999999999997642211111   111  111234567899999999999999999999999


Q ss_pred             HHHHhhhhhcCCccc
Q psy4039         503 ATVCQLYLWAPKHWL  517 (588)
Q Consensus       503 l~~L~~~~~~~h~w~  517 (588)
                      ++         |+|+
T Consensus       281 l~---------~~~~  286 (286)
T cd06638         281 LQ---------HVFI  286 (286)
T ss_pred             hh---------cccC
Confidence            99         9986

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=100.00  E-value=3.2e-38  Score=332.32  Aligned_cols=260  Identities=22%  Similarity=0.257  Sum_probs=199.8

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEEC-------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHh
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATFR-------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMN  263 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~  263 (588)
                      |++..++|++.+.||+|+||+||+|.+.       ++.||||+++.....  .              ....+.+|+.++.
T Consensus         2 ~~~~~~~~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~--~--------------~~~~~~~E~~~l~   65 (343)
T cd05103           2 WEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATH--S--------------EHRALMSELKILI   65 (343)
T ss_pred             cccchhHhcccccccCCccceEEEEeeccCCccccceeEEEEEeccCCCh--H--------------HHHHHHHHHHHHH
Confidence            6677789999999999999999999853       678999998532110  0              1123556888888


Q ss_pred             hhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc--------
Q psy4039         264 SVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC--------  334 (588)
Q Consensus       264 ~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~--------  334 (588)
                      .+   .+||||+++++++....                           ..++++|||+ +|+|.+++....        
T Consensus        66 ~l---~~h~niv~~~~~~~~~~---------------------------~~~~lv~ey~~~g~L~~~i~~~~~~~~~~~~  115 (343)
T cd05103          66 HI---GHHLNVVNLLGACTKPG---------------------------GPLMVIVEFCKFGNLSNYLRSKRGEFVPYKT  115 (343)
T ss_pred             hc---cCCccHhhhcceeecCC---------------------------CceEEEEeccCCCcHHHHHHhcCCccccccc
Confidence            77   47899999999876521                           1388999999 689999987531        


Q ss_pred             ----------------------------------------------------------CCCCHHHHHHHHHHHHHHHHHH
Q psy4039         335 ----------------------------------------------------------AQLSMHERVLLFTQLLEGVTHL  356 (588)
Q Consensus       335 ----------------------------------------------------------~~l~~~~~~~i~~ql~~gL~yL  356 (588)
                                                                                ..+++..+..++.|+++||.||
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~l  195 (343)
T cd05103         116 KDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEEAEQEDLYKKVLTLEDLICYSFQVAKGMEFL  195 (343)
T ss_pred             cccccccccccccchhhhhhhhccccccccccccccccCCCccccchhhhhhhhhhhhccCCHHHHHHHHHHHHHHHHHH
Confidence                                                                      1367888999999999999999


Q ss_pred             HhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCCc
Q psy4039         357 NMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSK  436 (588)
Q Consensus       357 H~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~k  436 (588)
                      |+++|+||||||+|||++.+     +.+||+|||+++.........   ......+++.|+|||++.+..      ++.+
T Consensus       196 H~~~i~H~dikp~Nil~~~~-----~~~kl~dfg~~~~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~------~~~~  261 (343)
T cd05103         196 ASRKCIHRDLAARNILLSEN-----NVVKICDFGLARDIYKDPDYV---RKGDARLPLKWMAPETIFDRV------YTIQ  261 (343)
T ss_pred             HhCCeecCCCccCeEEEcCC-----CcEEEEecccccccccCcchh---hcCCCCCCcceECcHHhcCCC------CCch
Confidence            99999999999999999977     789999999997653321111   111234677899999986554      4578


Q ss_pred             CchhhHHHHHHHHhc-CCCCCccccccc----cccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhh
Q psy4039         437 SDAWTAGTVAYEIFG-HDNPFYQSARNT----DYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYL  510 (588)
Q Consensus       437 sDVwS~Gvil~Ellt-G~~Pf~~~~~~~----~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~  510 (588)
                      +|||||||++|||++ |..||.......    ..........+..+++++.+++.+||+.||++|||+.++++.|+..+
T Consensus       262 ~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cl~~~p~~Rps~~eil~~l~~~~  340 (343)
T cd05103         262 SDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLL  340 (343)
T ss_pred             hhHHHHHHHHHHHHHCCCCCCCCccccHHHHHHHhccCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence            999999999999996 899986532111    11122233445567889999999999999999999999999887554

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=100.00  E-value=5.2e-38  Score=337.38  Aligned_cols=261  Identities=22%  Similarity=0.260  Sum_probs=203.0

Q ss_pred             CCccccccCCeEEeeeecccCceeEEEEEEC-------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHH
Q psy4039         188 PDVDDVKVDDIQIGKFIAKGTNAVVYEATFR-------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDM  260 (588)
Q Consensus       188 ~~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~  260 (588)
                      ...|++..++|.+++.||+|+||.||+|++.       +..||||++...... .               ..+.+.+|+.
T Consensus        29 ~~~~~~~~~~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~-~---------------~~~~~~~E~~   92 (401)
T cd05107          29 DSAWEMPRDNLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARS-S---------------EKQALMSELK   92 (401)
T ss_pred             CCcceecHHHeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCCh-h---------------HHHHHHHHHH
Confidence            4568888899999999999999999999975       358999999532110 0               1224567999


Q ss_pred             HHhhhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc-----
Q psy4039         261 LMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC-----  334 (588)
Q Consensus       261 il~~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~-----  334 (588)
                      ++..+   ..|||||+++++|....                            .+++||||+ +|+|.++++...     
T Consensus        93 ~l~~l---~~H~niv~~~~~~~~~~----------------------------~~~iv~E~~~~g~L~~~l~~~~~~~~~  141 (401)
T cd05107          93 IMSHL---GPHLNIVNLLGACTKGG----------------------------PIYIITEYCRYGDLVDYLHRNKHTFLQ  141 (401)
T ss_pred             HHHhc---CCCCCeEEEEEEEccCC----------------------------CcEEEEeccCCCcHHHHHHhccccchh
Confidence            99887   34999999999987632                            389999999 689999997531     


Q ss_pred             --------------------------------------------------------------------------------
Q psy4039         335 --------------------------------------------------------------------------------  334 (588)
Q Consensus       335 --------------------------------------------------------------------------------  334 (588)
                                                                                                      
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (401)
T cd05107         142 YYLDKNRDDGSLISGGSTPLSQRKSHVSLGSESDGGYMDMSKDESADYVPMQDMKGTVKYADIESSNYESPYDQYLPSAP  221 (401)
T ss_pred             hhcccccccccccccccccccccccchhhhhccCccccccCCccccCccchhcchhhhhhhhhhccCcCCchhhhhcccC
Confidence                                                                                            


Q ss_pred             ------------CCCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccc
Q psy4039         335 ------------AQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQ  402 (588)
Q Consensus       335 ------------~~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~  402 (588)
                                  ..+++..+..++.|++.||.|||+++|+||||||+|||++.+     ..+||+|||+++.........
T Consensus       222 ~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrdlkp~NiLl~~~-----~~~kL~DfGla~~~~~~~~~~  296 (401)
T cd05107         222 ERTRRDTLINESPALSYMDLVGFSYQVANGMEFLASKNCVHRDLAARNVLICEG-----KLVKICDFGLARDIMRDSNYI  296 (401)
T ss_pred             CCcchhhhhcCCCCCCHHHHHHHHHHHHHHHHHHhcCCcCcccCCcceEEEeCC-----CEEEEEecCcceecccccccc
Confidence                        136778889999999999999999999999999999999977     789999999998653321111


Q ss_pred             cccccccccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc----ccccccCCCCCCc
Q psy4039         403 YSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD----YEVNALPQLNTNV  477 (588)
Q Consensus       403 ~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~----~~~~~~~~~~~~~  477 (588)
                         ......|++.|||||++.+..      .+.++|||||||++|||++ |..||........    ......+..+..+
T Consensus       297 ---~~~~~~~~~~y~aPE~~~~~~------~~~~~DvwslGvil~e~l~~g~~P~~~~~~~~~~~~~~~~~~~~~~p~~~  367 (401)
T cd05107         297 ---SKGSTFLPLKWMAPESIFNNL------YTTLSDVWSFGILLWEIFTLGGTPYPELPMNEQFYNAIKRGYRMAKPAHA  367 (401)
T ss_pred             ---cCCCcCCCCceeChHHhcCCC------CCcHhHHHHHHHHHHHHHHcCCCCCCCCCchHHHHHHHHcCCCCCCCCCC
Confidence               111345788999999997654      4578999999999999998 8899865322111    1112233456678


Q ss_pred             cHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhh
Q psy4039         478 PEVMRRLVAKLLENDPSDRPSAELAATVCQLY  509 (588)
Q Consensus       478 ~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~  509 (588)
                      +.++.+++.+||+.+|.+||++++++..|+..
T Consensus       368 ~~~l~~li~~cl~~~P~~RPs~~ell~~L~~~  399 (401)
T cd05107         368 SDEIYEIMQKCWEEKFEIRPDFSQLVHLVGDL  399 (401)
T ss_pred             CHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence            99999999999999999999999999987643

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=8.4e-38  Score=317.41  Aligned_cols=252  Identities=24%  Similarity=0.286  Sum_probs=203.0

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||.|+||.||+|.+.  +..||+|++......                .....+.+|+.+++.+    +|||
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~----------------~~~~~~~~e~~~l~~l----~h~~   60 (274)
T cd06609           1 ELFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAE----------------DEIEDIQQEIQFLSQC----RSPY   60 (274)
T ss_pred             ChhhhhhhhcCCCCeEEEEEEECCCCeEEEEEEeeccccc----------------hHHHHHHHHHHHHHHc----CCCC
Confidence            46888899999999999999986  789999998432100                0123356688888887    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++++.+.                            ..+++|+||+ +++|.+++...  .+++..+..++.|++.|
T Consensus        61 i~~~~~~~~~~----------------------------~~~~~v~e~~~~~~L~~~~~~~--~~~~~~~~~~~~ql~~~  110 (274)
T cd06609          61 ITKYYGSFLKG----------------------------SKLWIIMEYCGGGSCLDLLKPG--KLDETYIAFILREVLLG  110 (274)
T ss_pred             eeeeeEEEEEC----------------------------CeEEEEEEeeCCCcHHHHHhhc--CCCHHHHHHHHHHHHHH
Confidence            99999988763                            2499999999 57999999876  89999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||+++|+||||+|+||+++++     +.++|+|||+++.......     ......|++.|+|||++.+..      
T Consensus       111 l~~lh~~~i~h~dl~p~ni~i~~~-----~~~~l~d~g~~~~~~~~~~-----~~~~~~~~~~y~~PE~~~~~~------  174 (274)
T cd06609         111 LEYLHEEGKIHRDIKAANILLSEE-----GDVKLADFGVSGQLTSTMS-----KRNTFVGTPFWMAPEVIKQSG------  174 (274)
T ss_pred             HHHHHhCCcccCCCCHHHEEECCC-----CCEEEcccccceeeccccc-----ccccccCCccccChhhhccCC------
Confidence            999999999999999999999987     7899999999987654321     112456889999999997654      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcccccccc---ccccccCCCCCC-ccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhh
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD---YEVNALPQLNTN-VPEVMRRLVAKLLENDPSDRPSAELAATVCQL  508 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~---~~~~~~~~~~~~-~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~  508 (588)
                      .+.++|||||||++|+|++|..||........   ......+.++.. +++++.+++.+||..||++|||++++++    
T Consensus       175 ~~~~sDv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~p~~Rpt~~~il~----  250 (274)
T cd06609         175 YDEKADIWSLGITAIELAKGEPPLSDLHPMRVLFLIPKNNPPSLEGNKFSKPFKDFVSLCLNKDPKERPSAKELLK----  250 (274)
T ss_pred             CCchhhHHHHHHHHHHHHhCCCCcccCchHHHHHHhhhcCCCCCcccccCHHHHHHHHHHhhCChhhCcCHHHHhh----
Confidence            45789999999999999999999965321111   111223333334 8899999999999999999999999999    


Q ss_pred             hhhcCCccccCCCC
Q psy4039         509 YLWAPKHWLYGATP  522 (588)
Q Consensus       509 ~~~~~h~w~~~~~~  522 (588)
                           |||+.....
T Consensus       251 -----~~~~~~~~~  259 (274)
T cd06609         251 -----HKFIKKAKK  259 (274)
T ss_pred             -----ChhhcCCCc
Confidence                 999985443

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=100.00  E-value=2e-37  Score=313.01  Aligned_cols=257  Identities=22%  Similarity=0.290  Sum_probs=199.1

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      .+|++++.||+|+||.||+|.+.  +..||||.+...........            ..+.+.+|+.+++.+    .|||
T Consensus         2 ~~~~~~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~------------~~~~~~~E~~~l~~l----~h~~   65 (265)
T cd06652           2 TNWRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSK------------EVNALECEIQLLKNL----LHER   65 (265)
T ss_pred             CcceEeeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHH------------HHHHHHHHHHHHHhc----CCCC
Confidence            67999999999999999999986  78999999853221111100            123456688999887    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++++.+..                          ...++++|||+ +++|.+++.... .+++..+..++.|++.|
T Consensus        66 i~~~~~~~~~~~--------------------------~~~~~~v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~l~~~  118 (265)
T cd06652          66 IVQYYGCLRDPM--------------------------ERTLSIFMEHMPGGSIKDQLKSYG-ALTENVTRKYTRQILEG  118 (265)
T ss_pred             eeeEEeEeccCC--------------------------CceEEEEEEecCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence            999999876521                          12488999999 579999998654 68999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||+++|+|+||||+||+++.+     +.++|+|||+++........  ........||..|+|||++.+..      
T Consensus       119 l~~lH~~~i~H~dl~p~nil~~~~-----~~~~l~Dfg~~~~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~------  185 (265)
T cd06652         119 VSYLHSNMIVHRDIKGANILRDSV-----GNVKLGDFGASKRLQTICLS--GTGMKSVTGTPYWMSPEVISGEG------  185 (265)
T ss_pred             HHHHHhCCEecCCCCHHHEEecCC-----CCEEECcCcccccccccccc--ccccccCCCCccccChhhhcCCC------
Confidence            999999999999999999999987     78999999999765431110  01112356899999999987543      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCccccccccc----cccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhh
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY----EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQL  508 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~----~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~  508 (588)
                      .+.++|||||||++|||++|+.||.........    .....+..+..++..+.+++.+||. +|.+||+++++++    
T Consensus       186 ~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~-~p~~Rp~~~~il~----  260 (265)
T cd06652         186 YGRKADIWSVGCTVVEMLTEKPPWAEFEAMAAIFKIATQPTNPVLPPHVSDHCRDFLKRIFV-EAKLRPSADELLR----  260 (265)
T ss_pred             CCcchhHHHHHHHHHHHhhCCCCCCccchHHHHHHHhcCCCCCCCchhhCHHHHHHHHHHhc-ChhhCCCHHHHhc----
Confidence            457899999999999999999999753211111    1112234556677889999999995 9999999999998    


Q ss_pred             hhhcCCcccc
Q psy4039         509 YLWAPKHWLY  518 (588)
Q Consensus       509 ~~~~~h~w~~  518 (588)
                           |||+.
T Consensus       261 -----~~~~~  265 (265)
T cd06652         261 -----HTFVH  265 (265)
T ss_pred             -----CcccC
Confidence                 99973

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=100.00  E-value=6.6e-38  Score=321.42  Aligned_cols=249  Identities=25%  Similarity=0.361  Sum_probs=202.8

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||.||++.+.  ++.||||++.......              ......+.+|+.+++.+    .|||
T Consensus         1 ~~y~~~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~--------------~~~~~~~~~e~~~l~~l----~h~~   62 (290)
T cd05580           1 DDFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVK--------------LKQVEHVLNEKRILQSI----RHPF   62 (290)
T ss_pred             CceEEEEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhh--------------hhHHHHHHHHHHHHHhC----CCCC
Confidence            47899999999999999999986  7899999985321100              01123456789999887    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++++.+..                            .++++|||+ +++|.+++.... .+++..+..++.|+++|
T Consensus        63 i~~~~~~~~~~~----------------------------~~~~v~e~~~~~~L~~~~~~~~-~l~~~~~~~~~~qil~~  113 (290)
T cd05580          63 LVNLYGSFQDDS----------------------------NLYLVMEYVPGGELFSHLRKSG-RFPEPVARFYAAQVVLA  113 (290)
T ss_pred             ccceeeEEEcCC----------------------------eEEEEEecCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence            999999887631                            489999999 789999998764 79999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||++||+||||+|+|||++.+     +.+||+|||+++.....        .....|++.|+|||.+.+..      
T Consensus       114 l~~lH~~~i~H~dl~p~nili~~~-----~~~kl~dfg~~~~~~~~--------~~~~~~~~~y~aPE~~~~~~------  174 (290)
T cd05580         114 LEYLHSLDIVYRDLKPENLLLDSD-----GYIKITDFGFAKRVKGR--------TYTLCGTPEYLAPEIILSKG------  174 (290)
T ss_pred             HHHHHHCCEecCCCCHHHEEECCC-----CCEEEeeCCCccccCCC--------CCCCCCCccccChhhhcCCC------
Confidence            999999999999999999999987     78999999999775443        11356899999999986654      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcccccccccc--ccccCCCCCCccHHHHHHHHHhhhhCCCCCC-----CHHHHHHH
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVAKLLENDPSDRP-----SAELAATV  505 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~--~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rp-----s~~e~l~~  505 (588)
                      .+.++||||||+++|+|++|..||..........  ......++..+++.+++++.+||..||.+|+     +++++++ 
T Consensus       175 ~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~R~~~~~~~~~~l~~-  253 (290)
T cd05580         175 YGKAVDWWALGILIYEMLAGYPPFFDDNPIQIYEKILEGKVRFPSFFSPDAKDLIRNLLQVDLTKRLGNLKNGVNDIKN-  253 (290)
T ss_pred             CCccccHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhcCCccCCccCCHHHHHHHHHHccCCHHHccCcccCCHHHHHc-
Confidence            3467999999999999999999997643211111  1223456677899999999999999999999     8889888 


Q ss_pred             HhhhhhcCCccccC
Q psy4039         506 CQLYLWAPKHWLYG  519 (588)
Q Consensus       506 L~~~~~~~h~w~~~  519 (588)
                              |||++.
T Consensus       254 --------~~~~~~  259 (290)
T cd05580         254 --------HPWFAG  259 (290)
T ss_pred             --------Cccccc
Confidence                    999864

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=100.00  E-value=1.3e-37  Score=318.99  Aligned_cols=250  Identities=23%  Similarity=0.272  Sum_probs=193.9

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|.+.+.||+|+||.||+|.+.  +..||||.+......                .....+.+|+.+++.+    +|+|
T Consensus         5 ~~y~~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~----------------~~~~~~~~e~~~l~~l----~h~n   64 (291)
T cd07870           5 TSYLNLEKLGEGSYATVYKGISRINGQLVALKVISMKTEE----------------GVPFTAIREASLLKGL----KHAN   64 (291)
T ss_pred             ceeEEEEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcC----------------CCcHHHHHHHHHHHhc----CCCC
Confidence            78999999999999999999886  789999998532111                0122345688888887    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      |+++++++.+..                            ..++||||++++|.+++......+++..+..++.|++.||
T Consensus        65 i~~~~~~~~~~~----------------------------~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~L  116 (291)
T cd07870          65 IVLLHDIIHTKE----------------------------TLTFVFEYMHTDLAQYMIQHPGGLHPYNVRLFMFQLLRGL  116 (291)
T ss_pred             EeEEEEEEecCC----------------------------eEEEEEecccCCHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence            999999987521                            4899999998899888876544788999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN  433 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~  433 (588)
                      .|||+.+|+||||||+|||++.+     +.++|+|||+++........     .....+++.|+|||++.+...     .
T Consensus       117 ~~lH~~~i~H~dlkp~Nil~~~~-----~~~~l~Dfg~~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~-----~  181 (291)
T cd07870         117 AYIHGQHILHRDLKPQNLLISYL-----GELKLADFGLARAKSIPSQT-----YSSEVVTLWYRPPDVLLGATD-----Y  181 (291)
T ss_pred             HHHHhCCcccCCCChHHEEEcCC-----CcEEEeccccccccCCCCCC-----CCCccccccccCCceeecCCC-----C
Confidence            99999999999999999999877     78999999999764332111     113457899999999865331     3


Q ss_pred             CCcCchhhHHHHHHHHhcCCCCCccccccc-------------------------cccccccC--------CCC--CCcc
Q psy4039         434 YSKSDAWTAGTVAYEIFGHDNPFYQSARNT-------------------------DYEVNALP--------QLN--TNVP  478 (588)
Q Consensus       434 ~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~-------------------------~~~~~~~~--------~~~--~~~~  478 (588)
                      +.++|||||||++|||++|..||.......                         .+.....+        ..+  ...+
T Consensus       182 ~~~~Dv~slG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (291)
T cd07870         182 SSALDIWGAGCIFIEMLQGQPAFPGVSDVFEQLEKIWTVLGVPTEDTWPGVSKLPNYKPEWFLPCKPQQLRVVWKRLSRP  261 (291)
T ss_pred             CcHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHcCCCChhhhhhhhhcccccchhccccCCcchhhhccccCCC
Confidence            467999999999999999999996522100                         00000000        000  1235


Q ss_pred             HHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccc
Q psy4039         479 EVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWL  517 (588)
Q Consensus       479 ~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~  517 (588)
                      .++.+++.+||+.||.+|||+++++.         |||+
T Consensus       262 ~~~~~ll~~~l~~dp~~R~t~~~~l~---------h~~~  291 (291)
T cd07870         262 PKAEDLASQMLMMFPKDRISAQDALL---------HPYF  291 (291)
T ss_pred             hHHHHHHHHHhCcCcccCcCHHHHhc---------CCCC
Confidence            78899999999999999999999999         9996

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=100.00  E-value=6.3e-38  Score=323.79  Aligned_cols=260  Identities=22%  Similarity=0.259  Sum_probs=201.4

Q ss_pred             ccccccCCeEEeeeecccCceeEEEEEEC---------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHH
Q psy4039         190 VDDVKVDDIQIGKFIAKGTNAVVYEATFR---------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDM  260 (588)
Q Consensus       190 ~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~---------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~  260 (588)
                      .+.+..++|.+++.||+|+||.||+|.+.         +..||+|.+.....                ......+.+|+.
T Consensus         9 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~----------------~~~~~~~~~E~~   72 (304)
T cd05101           9 RWEFSRDKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDAT----------------EKDLSDLVSEME   72 (304)
T ss_pred             cccccHHHeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccc----------------hHHHHHHHHHHH
Confidence            46777899999999999999999999753         35799998742110                001234566888


Q ss_pred             HHhhhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc-----
Q psy4039         261 LMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC-----  334 (588)
Q Consensus       261 il~~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~-----  334 (588)
                      +++.+   .+||||+++++++.+..                            ..+++|||+ +|+|.+++..+.     
T Consensus        73 ~l~~l---~~h~~i~~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~~~~~~  121 (304)
T cd05101          73 MMKMI---GKHKNIINLLGACTQDG----------------------------PLYVIVEYASKGNLREYLRARRPPGME  121 (304)
T ss_pred             HHHhh---ccCCCchheeEEEecCC----------------------------ceEEEEecCCCCcHHHHHHhcCCcccc
Confidence            88776   47999999999987632                            389999999 589999998642     


Q ss_pred             ----------CCCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccc
Q psy4039         335 ----------AQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYS  404 (588)
Q Consensus       335 ----------~~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~  404 (588)
                                ..+++.++..++.|+++||.|||++||+||||||+|||++.+     +.+||+|||+++.......... 
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~givH~dlkp~Nili~~~-----~~~kl~D~g~~~~~~~~~~~~~-  195 (304)
T cd05101         122 YSYDIARVPDEQMTFKDLVSCTYQVARGMEYLASQKCIHRDLAARNVLVTEN-----NVMKIADFGLARDVNNIDYYKK-  195 (304)
T ss_pred             cccccccCCcccccHHHHHHHHHHHHHHHHHHHHCCeeecccccceEEEcCC-----CcEEECCCccceeccccccccc-
Confidence                      257888999999999999999999999999999999999877     7899999999987644221111 


Q ss_pred             cccccccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHH
Q psy4039         405 SADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEV  480 (588)
Q Consensus       405 ~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~  480 (588)
                        .....+++.|+|||++.+..      ++.++|||||||++|||++ |..||.+......   .........+..++.+
T Consensus       196 --~~~~~~~~~y~aPE~~~~~~------~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (304)
T cd05101         196 --TTNGRLPVKWMAPEALFDRV------YTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPANCTNE  267 (304)
T ss_pred             --ccCCCCCceeeCchhhccCC------CCchhhHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHcCCcCCCCCCCCHH
Confidence              11234678899999986654      4578999999999999998 7888865322211   1112223345678999


Q ss_pred             HHHHHHHhhhhCCCCCCCHHHHHHHHhhhh
Q psy4039         481 MRRLVAKLLENDPSDRPSAELAATVCQLYL  510 (588)
Q Consensus       481 l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~  510 (588)
                      +++++.+||+.+|++|||+.++++.|+..+
T Consensus       268 ~~~li~~cl~~~p~~Rps~~e~l~~l~~~~  297 (304)
T cd05101         268 LYMMMRDCWHAIPSHRPTFKQLVEDLDRIL  297 (304)
T ss_pred             HHHHHHHHcccChhhCCCHHHHHHHHHHHH
Confidence            999999999999999999999999776543

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=8.7e-38  Score=315.80  Aligned_cols=259  Identities=22%  Similarity=0.306  Sum_probs=200.4

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||.||+|.+.  ++.||+|++.....                  ....+.+|+.+++.+   ..|||
T Consensus         6 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~------------------~~~~~~~e~~~l~~~---~~h~~   64 (275)
T cd06608           6 GIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIED------------------EEEEIKEEYNILRKY---SNHPN   64 (275)
T ss_pred             hheeheeeecCCCCeEEEEEEECCCCcEEEEEEEecCch------------------hHHHHHHHHHHHHHh---cCCCC
Confidence            88999999999999999999996  67899999853210                  123456788888876   47999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh---cCCCCHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER---CAQLSMHERVLLFTQL  349 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~---~~~l~~~~~~~i~~ql  349 (588)
                      |+++++++.+..+                      ......++++|||+ +++|.+++...   ...+++..+..++.|+
T Consensus        65 i~~~~~~~~~~~~----------------------~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql  122 (275)
T cd06608          65 IATFYGAFIKKNP----------------------PGNDDQLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRET  122 (275)
T ss_pred             hheEEEEEEecCC----------------------CCcceEEEEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHH
Confidence            9999999987431                      01233589999999 57999988753   3579999999999999


Q ss_pred             HHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCc
Q psy4039         350 LEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF  429 (588)
Q Consensus       350 ~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~  429 (588)
                      +.||.|||+++|+|+||+|+||+++.+     +.++|+|||++........     ......|++.|+|||++...... 
T Consensus       123 ~~al~~lH~~~i~H~~l~p~ni~~~~~-----~~~~l~d~~~~~~~~~~~~-----~~~~~~~~~~y~aPE~~~~~~~~-  191 (275)
T cd06608         123 LRGLAYLHENKVIHRDIKGQNILLTKN-----AEVKLVDFGVSAQLDSTLG-----RRNTFIGTPYWMAPEVIACDEQP-  191 (275)
T ss_pred             HHHHHHHhcCCcccCCCCHHHEEEccC-----CeEEECCCccceecccchh-----hhcCccccccccCHhHhcccccc-
Confidence            999999999999999999999999987     7899999999876543211     11235689999999998654321 


Q ss_pred             cCCCCCcCchhhHHHHHHHHhcCCCCCccccccccc---cccccCC--CCCCccHHHHHHHHHhhhhCCCCCCCHHHHHH
Q psy4039         430 SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY---EVNALPQ--LNTNVPEVMRRLVAKLLENDPSDRPSAELAAT  504 (588)
Q Consensus       430 ~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~---~~~~~~~--~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~  504 (588)
                      ...++.++|||||||++|+|++|..||.........   .....+.  .+..+++++++++.+||..||++|||++++++
T Consensus       192 ~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rpt~~~ll~  271 (275)
T cd06608         192 DASYDARSDVWSLGITAIELADGKPPLCDMHPMRALFKIPRNPPPTLKSPENWSKKFNDFISECLIKNYEQRPFMEELLE  271 (275)
T ss_pred             cCCccccccHHHhHHHHHHHHhCCCCccccchHHHHHHhhccCCCCCCchhhcCHHHHHHHHHHhhcChhhCcCHHHHhc
Confidence            112456899999999999999999999753211111   1111111  12346789999999999999999999999999


Q ss_pred             HHhhhhhcCCccc
Q psy4039         505 VCQLYLWAPKHWL  517 (588)
Q Consensus       505 ~L~~~~~~~h~w~  517 (588)
                               |||+
T Consensus       272 ---------~~~~  275 (275)
T cd06608         272 ---------HPFI  275 (275)
T ss_pred             ---------CCCC
Confidence                     9996

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=100.00  E-value=4e-38  Score=330.05  Aligned_cols=259  Identities=21%  Similarity=0.262  Sum_probs=200.5

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||.|+||.||+|...  +..||+|++......               ......+.+|+.+++.+    +|||
T Consensus         5 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~---------------~~~~~~~~~e~~~l~~l----~h~~   65 (334)
T cd07855           5 SRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDV---------------PTLAKRTLRELKILRHF----KHDN   65 (334)
T ss_pred             hceeeeeeeecCCCeEEEEEEEcCCCCEEEEEEecccccc---------------ccchHHHHHHHHHHHhc----CCCC
Confidence            78999999999999999999986  889999998532110               01223445688999887    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      |+++++++....                        .....+++||||++++|.+++.... .+++..+..++.||+.||
T Consensus        66 iv~~~~~~~~~~------------------------~~~~~~~lv~e~~~~~l~~~~~~~~-~~~~~~~~~i~~qi~~aL  120 (334)
T cd07855          66 IIAIRDILRPPG------------------------ADFKDVYVVMDLMESDLHHIIHSDQ-PLTEEHIRYFLYQLLRGL  120 (334)
T ss_pred             ccCHHHhccccC------------------------CCCceEEEEEehhhhhHHHHhccCC-CCCHHHHHHHHHHHHHHH
Confidence            999999876521                        1123589999999889999987654 699999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN  433 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~  433 (588)
                      .|||+++|+||||||+||+++.+     +.+||+|||+++........ .........|+..|+|||++.+...     +
T Consensus       121 ~~LH~~~ivH~dlkp~Nil~~~~-----~~~kl~dfg~~~~~~~~~~~-~~~~~~~~~~~~~y~~PE~~~~~~~-----~  189 (334)
T cd07855         121 KYIHSANVIHRDLKPSNLLVNED-----CELRIGDFGMARGLSSSPTE-HKYFMTEYVATRWYRAPELLLSLPE-----Y  189 (334)
T ss_pred             HHHHHCCeecCCCCHHHEEEcCC-----CcEEecccccceeecccCcC-CCcccccccccccccChHHhcCCcc-----c
Confidence            99999999999999999999987     89999999999765432211 1111124578999999999865321     4


Q ss_pred             CCcCchhhHHHHHHHHhcCCCCCcccccccc-----------------------c-----ccccc-----CCCCCCccHH
Q psy4039         434 YSKSDAWTAGTVAYEIFGHDNPFYQSARNTD-----------------------Y-----EVNAL-----PQLNTNVPEV  480 (588)
Q Consensus       434 ~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~-----------------------~-----~~~~~-----~~~~~~~~~~  480 (588)
                      +.++|||||||++|||++|+.||.+......                       .     .....     ......++++
T Consensus       190 ~~~~Di~slG~~l~el~~g~~pf~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (334)
T cd07855         190 TTAIDMWSVGCIFAEMLGRRQLFPGKNYVHQLKLILSVLGSPSEEVLNRIGSDRVRKYIQNLPRKQPVPWSKIFPKASPE  269 (334)
T ss_pred             ccccchHHHHHHHHHHHcCCCccCCCChHHHHHHHHHHhCCChhHhhhhhchhhHHHHHhhcccCCCCCHHHHcccCCHH
Confidence            5789999999999999999999965311000                       0     00000     0112456889


Q ss_pred             HHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCcccc
Q psy4039         481 MRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLY  518 (588)
Q Consensus       481 l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~  518 (588)
                      ++++|++||+.||++||++++++.         |||+.
T Consensus       270 ~~~li~~~l~~~P~~Rpt~~~~l~---------~~~~~  298 (334)
T cd07855         270 ALDLLSQMLQFDPEERITVEQALQ---------HPFLA  298 (334)
T ss_pred             HHHHHHHHccCChhhCcCHHHHHh---------Chhhh
Confidence            999999999999999999999999         99997

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=100.00  E-value=7.3e-38  Score=323.63  Aligned_cols=259  Identities=22%  Similarity=0.279  Sum_probs=201.8

Q ss_pred             CccccccCCeEEeeeecccCceeEEEEEEC-------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHH
Q psy4039         189 DVDDVKVDDIQIGKFIAKGTNAVVYEATFR-------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDML  261 (588)
Q Consensus       189 ~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~i  261 (588)
                      ..+.+..++|.+.+.||+|+||.||+|.+.       +..||||++......                ...+.+.+|+.+
T Consensus        28 ~~~~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~----------------~~~~~~~~E~~~   91 (302)
T cd05055          28 LKWEFPRNNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHS----------------SEREALMSELKI   91 (302)
T ss_pred             ccccccHHHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCCh----------------HHHHHHHHHHHH
Confidence            456677789999999999999999999862       458999998532110                012345678888


Q ss_pred             HhhhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc-CCCCH
Q psy4039         262 MNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC-AQLSM  339 (588)
Q Consensus       262 l~~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~-~~l~~  339 (588)
                      ++++   .+||||+++++++....                            ..+++|||+ +|+|.+++.... ..+++
T Consensus        92 l~~l---~~h~~iv~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~i~~~~~~~l~~  140 (302)
T cd05055          92 MSHL---GNHENIVNLLGACTIGG----------------------------PILVITEYCCYGDLLNFLRRKRESFLTL  140 (302)
T ss_pred             HHhc---cCCCCcceEEEEEecCC----------------------------ceEEEEEcCCCCcHHHHHHhCCCCCCCH
Confidence            8876   47999999999987632                            389999999 589999998643 24899


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccch
Q psy4039         340 HERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAP  419 (588)
Q Consensus       340 ~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~AP  419 (588)
                      .++..++.|++.||.|||+++|+|+||||+|||++.+     ..++|+|||+++.........   ......+++.|+||
T Consensus       141 ~~~~~i~~~i~~~l~~lH~~~ivH~dlkp~Nil~~~~-----~~~~l~dfg~~~~~~~~~~~~---~~~~~~~~~~y~aP  212 (302)
T cd05055         141 EDLLSFSYQVAKGMAFLASKNCIHRDLAARNVLLTHG-----KIVKICDFGLARDIMNDSNYV---VKGNARLPVKWMAP  212 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeehhhhccceEEEcCC-----CeEEECCCcccccccCCCcee---ecCCCCcccccCCH
Confidence            9999999999999999999999999999999999877     789999999998654422111   11123467889999


Q ss_pred             hHHhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCccccccccc----cccccCCCCCCccHHHHHHHHHhhhhCCC
Q psy4039         420 EVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTDY----EVNALPQLNTNVPEVMRRLVAKLLENDPS  494 (588)
Q Consensus       420 E~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~~----~~~~~~~~~~~~~~~l~~Li~~~L~~dP~  494 (588)
                      |++.+..      .+.++||||+||++|||++ |..||.........    .....+..+...++++.+++.+||+.+|+
T Consensus       213 E~~~~~~------~~~~~DiwslGvil~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~  286 (302)
T cd05055         213 ESIFNCV------YTFESDVWSYGILLWEIFSLGSNPYPGMPVDSKFYKLIKEGYRMAQPEHAPAEIYDIMKTCWDADPL  286 (302)
T ss_pred             hhhccCC------CCcHhHHHHHHHHHHHHHhCCCCCcCCCCchHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCCch
Confidence            9987654      4578999999999999998 99998764322111    11112234456789999999999999999


Q ss_pred             CCCCHHHHHHHHhh
Q psy4039         495 DRPSAELAATVCQL  508 (588)
Q Consensus       495 ~Rps~~e~l~~L~~  508 (588)
                      +|||+.++++.|+.
T Consensus       287 ~Rpt~~ell~~l~~  300 (302)
T cd05055         287 KRPTFKQIVQLIGK  300 (302)
T ss_pred             hCcCHHHHHHHHHh
Confidence            99999999987764

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.4e-38  Score=321.32  Aligned_cols=256  Identities=25%  Similarity=0.268  Sum_probs=202.1

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||.|+||.||+|.+.  +..||+|.+....    .             ...+.+.+|+.+++.+    +|||
T Consensus         5 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~----~-------------~~~~~~~~e~~~l~~l----~h~~   63 (280)
T cd06611           5 DIWEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQIES----E-------------EELEDFMVEIDILSEC----KHPN   63 (280)
T ss_pred             hHHHHHHHhcCCCCceEEEEEEcCCCcEEEEEEEeeCC----H-------------HHHHHHHHHHHHHHhC----CCCc
Confidence            67999999999999999999986  7899999984311    0             0123456788899887    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++++.+..                            ..++||||+ +++|.+++......+++..+..++.|++.|
T Consensus        64 i~~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~~~~~~~~l~~~~~~~~~~ql~~~  115 (280)
T cd06611          64 IVGLYEAYFYEN----------------------------KLWILIEFCDGGALDSIMLELERGLTEPQIRYVCRQMLEA  115 (280)
T ss_pred             eeEEEEEEecCC----------------------------eEEEEeeccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            999999987632                            489999999 579999998765579999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||+++|+||||||+||+++.+     +.++|+|||++........     ......||+.|+|||++....... ..
T Consensus       116 l~~lh~~~i~h~dl~p~nili~~~-----~~~~l~d~g~~~~~~~~~~-----~~~~~~~~~~y~~PE~~~~~~~~~-~~  184 (280)
T cd06611         116 LNFLHSHKVIHRDLKAGNILLTLD-----GDVKLADFGVSAKNKSTLQ-----KRDTFIGTPYWMAPEVVACETFKD-NP  184 (280)
T ss_pred             HHHHHHCCcccCCCChhhEEECCC-----CCEEEccCccchhhccccc-----ccceeecchhhcCHHHHhhcccCC-CC
Confidence            999999999999999999999987     7999999999866433211     111356899999999986432111 11


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCccccccccc---cccccC--CCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHh
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY---EVNALP--QLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~---~~~~~~--~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~  507 (588)
                      .+.++|||||||++|||++|+.||.........   .....+  ..+..++.++.+++.+||+.||++||+++++++   
T Consensus       185 ~~~~sDi~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~---  261 (280)
T cd06611         185 YDYKADIWSLGITLIELAQMEPPHHELNPMRVLLKILKSEPPTLDQPSKWSSSFNDFLKSCLVKDPDDRPTAAELLK---  261 (280)
T ss_pred             CCccccHHHHHHHHHHHHhCCCCcccCCHHHHHHHHhcCCCCCcCCcccCCHHHHHHHHHHhccChhhCcCHHHHhc---
Confidence            346899999999999999999999764221111   111111  224567899999999999999999999999999   


Q ss_pred             hhhhcCCccccCC
Q psy4039         508 LYLWAPKHWLYGA  520 (588)
Q Consensus       508 ~~~~~~h~w~~~~  520 (588)
                            |||+...
T Consensus       262 ------~~~~~~~  268 (280)
T cd06611         262 ------HPFVSDQ  268 (280)
T ss_pred             ------Chhhccc
Confidence                  9999755

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=100.00  E-value=1.1e-37  Score=355.38  Aligned_cols=267  Identities=22%  Similarity=0.293  Sum_probs=201.9

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      +++|++.+.||+|+||.||+|.+.  ++.||||++...... +.             ...+.+.+|+.+++.+    +||
T Consensus         1 igrYeIi~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~-~e-------------~~~~rflrEi~ILs~L----~HP   62 (932)
T PRK13184          1 MQRYDIIRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSE-NP-------------LLKKRFLREAKIAADL----IHP   62 (932)
T ss_pred             CCCeEEEEEEecCCCEEEEEEEECCCCcEEEEEEECccccc-CH-------------HHHHHHHHHHHHHHhC----CCc
Confidence            378999999999999999999986  789999998532111 10             1234567799999887    899


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh----------cCCCCHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER----------CAQLSMHE  341 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~----------~~~l~~~~  341 (588)
                      ||+++++++.+..                            ..+++|||+ +|+|.+++...          ...+++..
T Consensus        63 NIVkl~~v~~d~~----------------------------~lyLVMEY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~  114 (932)
T PRK13184         63 GIVPVYSICSDGD----------------------------PVYYTMPYIEGYTLKSLLKSVWQKESLSKELAEKTSVGA  114 (932)
T ss_pred             CcCeEEEEEeeCC----------------------------EEEEEEEcCCCCCHHHHHHHhhhccccchhhhcccCHHH
Confidence            9999999987632                            489999999 67999998742          12456778


Q ss_pred             HHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCc----c---------ccccccc
Q psy4039         342 RVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLS----M---------QYSSADI  408 (588)
Q Consensus       342 ~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~----~---------~~~~~~~  408 (588)
                      +..++.||++||+|||++||+||||||+|||++.+     +.+||+|||+++.......    .         .......
T Consensus       115 iL~I~~QIa~AL~yLHs~GIIHRDLKPeNILLd~d-----g~vKLiDFGLAk~i~~~~~~~~~l~~~~~~s~~s~~t~~g  189 (932)
T PRK13184        115 FLSIFHKICATIEYVHSKGVLHRDLKPDNILLGLF-----GEVVILDWGAAIFKKLEEEDLLDIDVDERNICYSSMTIPG  189 (932)
T ss_pred             HHHHHHHHHHHHHHHHHCCccccCCchheEEEcCC-----CCEEEEecCcceecccccccccccccccccccccccccCC
Confidence            89999999999999999999999999999999987     7899999999987521100    0         0001112


Q ss_pred             cccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccccccc--ccC---CCCCCccHHHHH
Q psy4039         409 ELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVN--ALP---QLNTNVPEVMRR  483 (588)
Q Consensus       409 ~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~~--~~~---~~~~~~~~~l~~  483 (588)
                      ..+||+.|||||++.+..      ++.++|||||||++|||++|..||............  ..+   .....+|+.+.+
T Consensus       190 ~~vGT~~YmAPE~l~g~~------~S~kSDIWSLGVILyELLTG~~PF~~~~~~ki~~~~~i~~P~~~~p~~~iP~~L~~  263 (932)
T PRK13184        190 KIVGTPDYMAPERLLGVP------ASESTDIYALGVILYQMLTLSFPYRRKKGRKISYRDVILSPIEVAPYREIPPFLSQ  263 (932)
T ss_pred             CCCCCCCCCCHHHhcCCC------CCcHhHHHHHHHHHHHHHHCCCCCCCcchhhhhhhhhccChhhccccccCCHHHHH
Confidence            357999999999997665      457899999999999999999999763221111000  000   112467899999


Q ss_pred             HHHHhhhhCCCCCCC-HHHHHHHHhhhhhcCCcccc
Q psy4039         484 LVAKLLENDPSDRPS-AELAATVCQLYLWAPKHWLY  518 (588)
Q Consensus       484 Li~~~L~~dP~~Rps-~~e~l~~L~~~~~~~h~w~~  518 (588)
                      ++.+||+.||++||+ ++++++.|+.++-....|..
T Consensus       264 LI~rcL~~DP~kR~ss~eeLl~~Le~~lq~~p~w~~  299 (932)
T PRK13184        264 IAMKALAVDPAERYSSVQELKQDLEPHLQGSPEWTV  299 (932)
T ss_pred             HHHHHccCChhhCcCHHHHHHHHHHHHHhcCccccc
Confidence            999999999999965 66666777776665566654

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=100.00  E-value=1.1e-37  Score=315.36  Aligned_cols=255  Identities=21%  Similarity=0.301  Sum_probs=197.6

Q ss_pred             cccCCeEEeeeecccCceeEEEEEEC--C---eeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcC
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFR--G---VEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVEN  267 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~--g---~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~  267 (588)
                      +..++|+..+.||+|+||.||+|++.  +   ..+|||.+.....   .             ...+.+..|+.++..+  
T Consensus         2 i~~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~---~-------------~~~~~~~~e~~~l~~l--   63 (268)
T cd05063           2 IHPSHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYT---E-------------KQRQDFLSEASIMGQF--   63 (268)
T ss_pred             CChHHceEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccCC---H-------------HHHHHHHHHHHHHhcC--
Confidence            34578999999999999999999985  2   3799999843211   0             0123456688888887  


Q ss_pred             CCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHH
Q psy4039         268 LPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLF  346 (588)
Q Consensus       268 l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~  346 (588)
                        +||||+++++++.+..                            ..++||||+ +++|.+++......+++.++..++
T Consensus        64 --~h~~i~~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~  113 (268)
T cd05063          64 --SHHNIIRLEGVVTKFK----------------------------PAMIITEYMENGALDKYLRDHDGEFSSYQLVGML  113 (268)
T ss_pred             --CCCCeeEEEEEEccCC----------------------------CcEEEEEcCCCCCHHHHHHhcCCCCCHHHHHHHH
Confidence              8999999999987632                            389999999 579999998765589999999999


Q ss_pred             HHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCC
Q psy4039         347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP  426 (588)
Q Consensus       347 ~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~  426 (588)
                      .|++.||.|||+.||+||||||+||+++.+     +.+||+|||++............  ......++.|+|||++.+..
T Consensus       114 ~~l~~al~~lH~~~i~H~dlkp~Nili~~~-----~~~kl~dfg~~~~~~~~~~~~~~--~~~~~~~~~y~~PE~~~~~~  186 (268)
T cd05063         114 RGIAAGMKYLSDMNYVHRDLAARNILVNSN-----LECKVSDFGLSRVLEDDPEGTYT--TSGGKIPIRWTAPEAIAYRK  186 (268)
T ss_pred             HHHHHHHHHHHHCCeeccccchhhEEEcCC-----CcEEECCCccceeccccccccee--ccCCCcCceecCHHHhhcCC
Confidence            999999999999999999999999999977     78999999999765442211111  11122356799999987554


Q ss_pred             CCccCCCCCcCchhhHHHHHHHHhc-CCCCCccccccccc---cccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHH
Q psy4039         427 GLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTDY---EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA  502 (588)
Q Consensus       427 ~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~~---~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~  502 (588)
                            ++.++|||||||++|||++ |..||.........   ......+.+..++.++.+++.+||+.+|++||++.++
T Consensus       187 ------~~~~~Dv~slG~il~ell~~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~c~~~~p~~Rp~~~~i  260 (268)
T cd05063         187 ------FTSASDVWSFGIVMWEVMSFGERPYWDMSNHEVMKAINDGFRLPAPMDCPSAVYQLMLQCWQQDRARRPRFVDI  260 (268)
T ss_pred             ------cChHhHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHH
Confidence                  4578999999999999997 99999653221111   1112223445688999999999999999999999999


Q ss_pred             HHHHhh
Q psy4039         503 ATVCQL  508 (588)
Q Consensus       503 l~~L~~  508 (588)
                      ++.|..
T Consensus       261 ~~~l~~  266 (268)
T cd05063         261 VNLLDK  266 (268)
T ss_pred             HHHHHh
Confidence            987763

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.1e-37  Score=313.21  Aligned_cols=247  Identities=23%  Similarity=0.329  Sum_probs=199.3

Q ss_pred             ccccCCeEEeeeecccCceeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCC
Q psy4039         192 DVKVDDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPH  271 (588)
Q Consensus       192 ~i~~~~~~~~~~IG~G~fG~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~H  271 (588)
                      .+..++|++.+.||+|+||.||+|...++.||||.+.....                  ..+.+.+|+.+++.+    +|
T Consensus         2 ~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~v~iK~~~~~~~------------------~~~~~~~e~~~l~~l----~~   59 (256)
T cd05039           2 AINSKELKLGATIGKGEFGDVMLGDYRGQKVAVKCLKDDST------------------AAQAFLAEASVMTTL----RH   59 (256)
T ss_pred             ccChhhccceeeeecCCCceEEEEEecCcEEEEEEeccchh------------------HHHHHHHHHHHHHhc----CC
Confidence            45568899999999999999999999999999999853210                  123456688899887    89


Q ss_pred             CceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc-CCCCHHHHHHHHHHH
Q psy4039         272 PNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC-AQLSMHERVLLFTQL  349 (588)
Q Consensus       272 pNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~-~~l~~~~~~~i~~ql  349 (588)
                      +||+++++++.+..                            ..++||||+ +++|.+++.... ..+++..+..++.|+
T Consensus        60 ~~i~~~~~~~~~~~----------------------------~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi  111 (256)
T cd05039          60 PNLVQLLGVVLQGN----------------------------PLYIVTEYMAKGSLVDYLRSRGRAVITLAQQLGFALDV  111 (256)
T ss_pred             cceeeeEEEEcCCC----------------------------CeEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence            99999999987532                            389999999 479999998653 368999999999999


Q ss_pred             HHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCc
Q psy4039         350 LEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF  429 (588)
Q Consensus       350 ~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~  429 (588)
                      +.||.|||+++|+||||||+||+++.+     +.++|+|||.++.......        ...++..|+|||++....   
T Consensus       112 ~~~l~~lh~~~i~H~di~p~Nili~~~-----~~~~l~d~g~~~~~~~~~~--------~~~~~~~~~ape~~~~~~---  175 (256)
T cd05039         112 CEGMEYLEEKNFVHRDLAARNVLVSED-----LVAKVSDFGLAKEASQGQD--------SGKLPVKWTAPEALREKK---  175 (256)
T ss_pred             HHHHHHHHhCCccchhcccceEEEeCC-----CCEEEcccccccccccccc--------cCCCcccccCchhhcCCc---
Confidence            999999999999999999999999987     7899999999977533211        123456899999986543   


Q ss_pred             cCCCCCcCchhhHHHHHHHHhc-CCCCCccccccccc---cccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHH
Q psy4039         430 SFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTDY---EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATV  505 (588)
Q Consensus       430 ~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~~---~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~  505 (588)
                         .+.++||||||+++|||++ |..||.........   .....+..+..+|+++.+++.+||..+|++|||++++++.
T Consensus       176 ---~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~  252 (256)
T cd05039         176 ---FSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPHVEKGYRMEAPEGCPPEVYKVMKDCWELDPAKRPTFKQLREQ  252 (256)
T ss_pred             ---CCcHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHhcCCCCCCccCCCHHHHHHHHHHhccChhhCcCHHHHHHH
Confidence               4468999999999999997 99998664221111   1112234456788999999999999999999999999987


Q ss_pred             Hh
Q psy4039         506 CQ  507 (588)
Q Consensus       506 L~  507 (588)
                      |+
T Consensus       253 l~  254 (256)
T cd05039         253 LA  254 (256)
T ss_pred             Hh
Confidence            65

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=100.00  E-value=1.6e-37  Score=313.54  Aligned_cols=258  Identities=21%  Similarity=0.286  Sum_probs=200.6

Q ss_pred             CeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCce
Q psy4039         197 DIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNV  274 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNI  274 (588)
                      +|+.++.||+|+||.||+|...  +..||+|.+...........           ...+.+.+|+.+++.+    +||||
T Consensus         1 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~-----------~~~~~~~~e~~~l~~l----~h~~i   65 (268)
T cd06630           1 EWLKGQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQE-----------EVVEALRKEIRLMARL----NHPHI   65 (268)
T ss_pred             CccccceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHH-----------HHHHHHHHHHHHHHHc----CCCce
Confidence            4778899999999999999875  78999999853221111100           0123456788999887    99999


Q ss_pred             EEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         275 VVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       275 V~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      +++++++.+.                            ...++||||+ +++|.+++.... .+++..+..++.|++.||
T Consensus        66 v~~~~~~~~~----------------------------~~~~~v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~ql~~al  116 (268)
T cd06630          66 IRMLGATCED----------------------------SHFNLFVEWMAGGSVSHLLSKYG-AFKEAVIINYTEQLLRGL  116 (268)
T ss_pred             ehhhceeccC----------------------------CeEEEEEeccCCCcHHHHHHHhC-CCCHHHHHHHHHHHHHHH
Confidence            9999998752                            1489999999 579999998754 789999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN  433 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~  433 (588)
                      .|||++|++||||||+||+++.+.    ..+||+|||.+.......... ........||..|+|||++.+..      .
T Consensus       117 ~~LH~~~i~H~~i~~~nil~~~~~----~~~~l~dfg~~~~~~~~~~~~-~~~~~~~~~~~~~~~PE~~~~~~------~  185 (268)
T cd06630         117 SYLHENQIIHRDVKGANLLIDSTG----QRLRIADFGAAARLAAKGTGA-GEFQGQLLGTIAFMAPEVLRGEQ------Y  185 (268)
T ss_pred             HHHHhCCeecCCCCHHHEEEcCCC----CEEEEcccccccccccccccC-CccccccccccceeCHhHhccCC------C
Confidence            999999999999999999997652    369999999997765421110 11112356899999999986654      4


Q ss_pred             CCcCchhhHHHHHHHHhcCCCCCccccccccc-------cccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHH
Q psy4039         434 YSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY-------EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVC  506 (588)
Q Consensus       434 ~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~-------~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L  506 (588)
                      +.++||||+||++|+|++|..||.........       .....+..+..+++++.+++.+||..||++||++.++++  
T Consensus       186 ~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~ll~--  263 (268)
T cd06630         186 GRSCDVWSVGCVIIEMATAKPPWNAEKHSNHLALIFKIASATTAPSIPEHLSPGLRDVTLRCLELQPEDRPPSRELLK--  263 (268)
T ss_pred             CcccchHHHHHHHHHHHhCCCCCCCCCCcchHHHHHHHhccCCCCCCchhhCHHHHHHHHHHcCCCcccCcCHHHHhc--
Confidence            57899999999999999999999653221111       112234556678899999999999999999999999999  


Q ss_pred             hhhhhcCCcccc
Q psy4039         507 QLYLWAPKHWLY  518 (588)
Q Consensus       507 ~~~~~~~h~w~~  518 (588)
                             |||++
T Consensus       264 -------~~~~~  268 (268)
T cd06630         264 -------HPVFR  268 (268)
T ss_pred             -------CcccC
Confidence                   99974

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=100.00  E-value=1.1e-37  Score=329.24  Aligned_cols=253  Identities=24%  Similarity=0.275  Sum_probs=195.7

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||.||+|.+.  ++.||||.+......  .             .....+.+|+.+++.+    +|||
T Consensus        16 ~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~--~-------------~~~~~~~~E~~~l~~l----~h~~   76 (353)
T cd07850          16 KRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQN--V-------------THAKRAYRELVLMKLV----NHKN   76 (353)
T ss_pred             cceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCccccC--h-------------hHHHHHHHHHHHHHhc----CCCC
Confidence            88999999999999999999986  789999998421110  0             0112344688888887    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      |++++++|.....                      .......|+||||+.++|.+.+..   .+++..+..++.|++.||
T Consensus        77 iv~~~~~~~~~~~----------------------~~~~~~~~lv~e~~~~~l~~~~~~---~l~~~~~~~~~~ql~~aL  131 (353)
T cd07850          77 IIGLLNVFTPQKS----------------------LEEFQDVYLVMELMDANLCQVIQM---DLDHERMSYLLYQMLCGI  131 (353)
T ss_pred             CcceeeeeccCCC----------------------ccccCcEEEEEeccCCCHHHHHhh---cCCHHHHHHHHHHHHHHH
Confidence            9999999875321                      111224899999999999998864   489999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN  433 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~  433 (588)
                      .|||++||+||||||+||+++.+     +.+||+|||+++.......      .....||+.|+|||++.+..      +
T Consensus       132 ~~LH~~gi~H~dlkp~Nil~~~~-----~~~kL~Dfg~~~~~~~~~~------~~~~~~~~~y~aPE~~~~~~------~  194 (353)
T cd07850         132 KHLHSAGIIHRDLKPSNIVVKSD-----CTLKILDFGLARTAGTSFM------MTPYVVTRYYRAPEVILGMG------Y  194 (353)
T ss_pred             HHHHhCCeeeCCCCHHHEEECCC-----CCEEEccCccceeCCCCCC------CCCCcccccccCHHHHhCCC------C
Confidence            99999999999999999999987     7899999999987544221      11345889999999997654      4


Q ss_pred             CCcCchhhHHHHHHHHhcCCCCCccccccccc-------------------------c----------------ccccC-
Q psy4039         434 YSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY-------------------------E----------------VNALP-  471 (588)
Q Consensus       434 ~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~-------------------------~----------------~~~~~-  471 (588)
                      +.++|||||||++|+|++|+.||........+                         .                ....+ 
T Consensus       195 ~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (353)
T cd07850         195 KENVDIWSVGCIMGEMIRGTVLFPGTDHIDQWNKIIEQLGTPSDEFMSRLQPTVRNYVENRPKYAGYSFEELFPDVLFPP  274 (353)
T ss_pred             CCchhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHhhhhhhHHhhcCCCCCCcchhhhCcccccCc
Confidence            57899999999999999999999642110000                         0                00000 


Q ss_pred             ---CCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCcccc
Q psy4039         472 ---QLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLY  518 (588)
Q Consensus       472 ---~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~  518 (588)
                         ..+...++.++++|.+||+.||++|||+.++++         |||++
T Consensus       275 ~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~eiL~---------~~~~~  315 (353)
T cd07850         275 DSESHNKLKASQARDLLSKMLVIDPEKRISVDDALQ---------HPYIN  315 (353)
T ss_pred             ccccccccchhHHHHHHHHHcCCChhhCcCHHHHhc---------ChhHh
Confidence               001234667899999999999999999999999         99886

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=100.00  E-value=9.3e-38  Score=321.60  Aligned_cols=254  Identities=21%  Similarity=0.264  Sum_probs=196.6

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--C--eeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCC
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--G--VEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPH  271 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g--~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~H  271 (588)
                      ++|++.+.||+|+||.||+|.+.  +  ..+|+|.+.....   .             ...+.+.+|+.++.++   .+|
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~---~-------------~~~~~~~~E~~~l~~l---~~h   62 (297)
T cd05089           2 EDIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFAS---E-------------NDHRDFAGELEVLCKL---GHH   62 (297)
T ss_pred             ccceeeeeecCCCcceEEEEEecCCCCcceeEEEEccccCC---H-------------HHHHHHHHHHHHHHhh---cCC
Confidence            78999999999999999999886  2  3578888742110   0             0123456788888776   479


Q ss_pred             CceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc---------------C
Q psy4039         272 PNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC---------------A  335 (588)
Q Consensus       272 pNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~---------------~  335 (588)
                      |||+++++++.+..                            ..+++|||+ +++|.+++....               .
T Consensus        63 p~iv~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~  114 (297)
T cd05089          63 PNIINLLGACENRG----------------------------YLYIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTAS  114 (297)
T ss_pred             CchhheEEEEccCC----------------------------cceEEEEecCCCcHHHHHHhccccccccccccccCccC
Confidence            99999999886531                            389999999 689999997532               2


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCcc
Q psy4039         336 QLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVA  415 (588)
Q Consensus       336 ~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~  415 (588)
                      .+++..++.++.|++.||+|||++||+||||||+|||++.+     +.+||+|||++.........      .....+..
T Consensus       115 ~l~~~~~~~i~~qi~~al~~lH~~~ivH~dlkp~Nill~~~-----~~~kl~dfg~~~~~~~~~~~------~~~~~~~~  183 (297)
T cd05089         115 TLTSQQLLQFASDVATGMQYLSEKQFIHRDLAARNVLVGEN-----LASKIADFGLSRGEEVYVKK------TMGRLPVR  183 (297)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCcccCcCCcceEEECCC-----CeEEECCcCCCccccceecc------CCCCcCcc
Confidence            48899999999999999999999999999999999999887     78999999998643221110      01223557


Q ss_pred             ccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCccccccccc---cccccCCCCCCccHHHHHHHHHhhhh
Q psy4039         416 LMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTDY---EVNALPQLNTNVPEVMRRLVAKLLEN  491 (588)
Q Consensus       416 Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~~---~~~~~~~~~~~~~~~l~~Li~~~L~~  491 (588)
                      |+|||++.+..      ++.++|||||||++|||++ |..||.........   .....+..+..++.++.+++.+||..
T Consensus       184 y~aPE~~~~~~------~~~~~DvwSlG~il~el~t~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~  257 (297)
T cd05089         184 WMAIESLNYSV------YTTKSDVWSFGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRMEKPRNCDDEVYELMRQCWRD  257 (297)
T ss_pred             ccCchhhccCC------CCchhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCC
Confidence            99999987654      4578999999999999997 99999764322111   11223345567899999999999999


Q ss_pred             CCCCCCCHHHHHHHHhhhhhcC
Q psy4039         492 DPSDRPSAELAATVCQLYLWAP  513 (588)
Q Consensus       492 dP~~Rps~~e~l~~L~~~~~~~  513 (588)
                      ||.+||+++++++.|..++.+.
T Consensus       258 ~p~~Rp~~~~i~~~l~~~~~~~  279 (297)
T cd05089         258 RPYERPPFAQISVQLSRMLEAR  279 (297)
T ss_pred             ChhhCcCHHHHHHHHHHHHHhh
Confidence            9999999999999888776544

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=100.00  E-value=5.8e-38  Score=320.00  Aligned_cols=250  Identities=22%  Similarity=0.303  Sum_probs=195.6

Q ss_pred             CeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCce
Q psy4039         197 DIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNV  274 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNI  274 (588)
                      +|+..+.||.|+||.||+|++.  +..||||.+......               ......+.+|+.+++.+    +||||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~---------------~~~~~~~~~E~~~l~~l----~h~~i   61 (284)
T cd07860           1 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTET---------------EGVPSTAIREISLLKEL----NHPNI   61 (284)
T ss_pred             CceeeeeecCCCceEEEEEEECCCCCEEEEEEccccccc---------------cccchHHHHHHHHHHhc----CCCCC
Confidence            4889999999999999999986  789999998432111               01223466799999987    99999


Q ss_pred             EEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHh-cCCCCHHHHHHHHHHHHHHH
Q psy4039         275 VVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRER-CAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       275 V~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~-~~~l~~~~~~~i~~ql~~gL  353 (588)
                      +++++++.+..                            ..+++|||++++|.+++... ...+++..+..++.|++.||
T Consensus        62 ~~~~~~~~~~~----------------------------~~~~v~e~~~~~l~~~~~~~~~~~l~~~~~~~~~~~i~~~l  113 (284)
T cd07860          62 VKLLDVIHTEN----------------------------KLYLVFEFLHQDLKKFMDASPLSGIPLPLIKSYLFQLLQGL  113 (284)
T ss_pred             cchhhhcccCC----------------------------cEEEEeeccccCHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence            99999886532                            48999999988999998764 34789999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN  433 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~  433 (588)
                      +|||+++++||||||+||+++.+     +.+||+|||++.........     .....+++.|+|||++.+...     .
T Consensus       114 ~~lh~~~i~H~~l~p~nill~~~-----~~~~l~dfg~~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~-----~  178 (284)
T cd07860         114 AFCHSHRVLHRDLKPQNLLINTE-----GAIKLADFGLARAFGVPVRT-----YTHEVVTLWYRAPEILLGCKY-----Y  178 (284)
T ss_pred             HHHHHCCeecCCCCHHHEEECCC-----CCEEEeeccchhhcccCccc-----cccccccccccCCeEEecCCC-----C
Confidence            99999999999999999999988     78999999998765432111     113457889999998865431     3


Q ss_pred             CCcCchhhHHHHHHHHhcCCCCCcccccccccc-------------------------------ccccCCCCCCccHHHH
Q psy4039         434 YSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE-------------------------------VNALPQLNTNVPEVMR  482 (588)
Q Consensus       434 ~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~l~  482 (588)
                      +.++|||||||++|||++|+.||..........                               ..........++++++
T Consensus       179 ~~~~Dv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (284)
T cd07860         179 STAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSLPDYKPSFPKWARQDFSKVVPPLDEDGR  258 (284)
T ss_pred             CcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCChhhhhhhhHHHHHHhhcccccccCHHHHcccCCHHHH
Confidence            467999999999999999999996532110000                               0000011235678899


Q ss_pred             HHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccc
Q psy4039         483 RLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWL  517 (588)
Q Consensus       483 ~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~  517 (588)
                      ++|.+||+.||++|||+++++.         |||+
T Consensus       259 ~li~~~l~~~P~~Rpt~~~~l~---------~~~f  284 (284)
T cd07860         259 DLLSQMLHYDPNKRISAKAALA---------HPFF  284 (284)
T ss_pred             HHHHHhcCCCcccCCCHHHHhc---------CCCC
Confidence            9999999999999999999999         9996

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=100.00  E-value=2e-37  Score=312.12  Aligned_cols=254  Identities=26%  Similarity=0.342  Sum_probs=199.3

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||.|+||+||+|.+.  +..+|+|++.......                ....+.+|+.+++.+    +|||
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~----------------~~~~~~~e~~~l~~l----~~~~   60 (267)
T cd06610           1 DDYELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQT----------------SVDELRKEVQAMSQC----NHPN   60 (267)
T ss_pred             CcceeeeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcch----------------HHHHHHHHHHHHHhc----CCCC
Confidence            57999999999999999999985  7899999984311110                223456788888876    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc--CCCCHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC--AQLSMHERVLLFTQLL  350 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~--~~l~~~~~~~i~~ql~  350 (588)
                      |+++++.+.+..                            ..+++||++ +++|.+++....  ..+++..+..++.|++
T Consensus        61 i~~~~~~~~~~~----------------------------~~~iv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ql~  112 (267)
T cd06610          61 VVKYYTSFVVGD----------------------------ELWLVMPYLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVL  112 (267)
T ss_pred             EEEEEEEEeeCC----------------------------EEEEEEeccCCCcHHHHHHHhcccCCCCHHHHHHHHHHHH
Confidence            999999887632                            489999999 579999998642  3689999999999999


Q ss_pred             HHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCcc
Q psy4039         351 EGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFS  430 (588)
Q Consensus       351 ~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~  430 (588)
                      .||.|||++||+||||||+||+++++     +.++|+|||++.......... ........|+..|+|||++.....   
T Consensus       113 ~al~~lh~~~i~h~~l~p~ni~~~~~-----~~~~l~df~~~~~~~~~~~~~-~~~~~~~~~~~~y~~Pe~~~~~~~---  183 (267)
T cd06610         113 KGLEYLHSNGQIHRDIKAGNILLGED-----GSVKIADFGVSASLADGGDRT-RKVRKTFVGTPCWMAPEVMEQVHG---  183 (267)
T ss_pred             HHHHHHHhCCeecCCCCHHhEEEcCC-----CCEEEcccchHHHhccCcccc-ccccccccCChhhcChHHHccccC---
Confidence            99999999999999999999999987     789999999998765432211 011124568999999999876521   


Q ss_pred             CCCCCcCchhhHHHHHHHHhcCCCCCccccccccccc---cccCCC-----CCCccHHHHHHHHHhhhhCCCCCCCHHHH
Q psy4039         431 FVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV---NALPQL-----NTNVPEVMRRLVAKLLENDPSDRPSAELA  502 (588)
Q Consensus       431 ~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~---~~~~~~-----~~~~~~~l~~Li~~~L~~dP~~Rps~~e~  502 (588)
                        .+.++|+|||||++|||++|+.||........+..   ...+.+     ...+++++.+++.+||+.||++||+++++
T Consensus       184 --~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l  261 (267)
T cd06610         184 --YDFKADIWSFGITAIELATGAAPYSKYPPMKVLMLTLQNDPPSLETGADYKKYSKSFRKMISLCLQKDPSKRPTAEEL  261 (267)
T ss_pred             --cCcccchHhHhHHHHHHHhCCCCccccChhhhHHHHhcCCCCCcCCccccccccHHHHHHHHHHcCCChhhCcCHHHH
Confidence              45789999999999999999999976422211111   111111     13678899999999999999999999999


Q ss_pred             HHHHhhhhhcCCccc
Q psy4039         503 ATVCQLYLWAPKHWL  517 (588)
Q Consensus       503 l~~L~~~~~~~h~w~  517 (588)
                      +.         |||+
T Consensus       262 l~---------~p~~  267 (267)
T cd06610         262 LK---------HKFF  267 (267)
T ss_pred             hh---------CCCC
Confidence            99         9996

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>KOG1095|consensus

Probab=100.00  E-value=3.5e-38  Score=357.11  Aligned_cols=257  Identities=26%  Similarity=0.331  Sum_probs=206.6

Q ss_pred             ccccCCeEEeeeecccCceeEEEEEEC---C----eeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhh
Q psy4039         192 DVKVDDIQIGKFIAKGTNAVVYEATFR---G----VEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNS  264 (588)
Q Consensus       192 ~i~~~~~~~~~~IG~G~fG~Vy~a~~~---g----~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~  264 (588)
                      .+..+..++...||+|.||.||.|...   +    ..||||.+.....                .....+|.+|..+|++
T Consensus       688 ~v~~~~v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~----------------~~~~~~Fl~Ea~~m~~  751 (1025)
T KOG1095|consen  688 EVPRKNVTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSS----------------EQEVSDFLKEALLMSK  751 (1025)
T ss_pred             cCChhheEeeeeeccccccceEEEEEecCCCCccceEEEEEeccccCC----------------HHHHHHHHHHHHHHhc
Confidence            466678899999999999999999997   3    2489998853211                1144567889999999


Q ss_pred             hcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh------cCCC
Q psy4039         265 VENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER------CAQL  337 (588)
Q Consensus       265 l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~------~~~l  337 (588)
                      +    +|||||+++|+|.+..                            ..++++||| +|+|..||++.      ...+
T Consensus       752 f----~HpNiv~liGv~l~~~----------------------------~~~i~leyM~gGDL~sflr~~r~~~~~~~~L  799 (1025)
T KOG1095|consen  752 F----DHPNIVSLIGVCLDSG----------------------------PPLILLEYMEGGDLLSFLRESRPAPFQPSNL  799 (1025)
T ss_pred             C----CCcceeeEEEeecCCC----------------------------CcEEEehhcccCcHHHHHHhcccccCCCCCC
Confidence            8    9999999999998732                            289999999 78999999987      5679


Q ss_pred             CHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCcccc
Q psy4039         338 SMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALM  417 (588)
Q Consensus       338 ~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~  417 (588)
                      +..+.+.++.|||+|+.||+++++|||||.++|+||+..     ..+||+|||+|+.+-.....   .....-.-...||
T Consensus       800 ~~~dLl~~a~dvA~G~~YLe~~~fvHRDLAaRNCLL~~~-----r~VKIaDFGlArDiy~~~yy---r~~~~a~lPvkWm  871 (1025)
T KOG1095|consen  800 SMRDLLAFALDVAKGMNYLESKHFVHRDLAARNCLLDER-----RVVKIADFGLARDIYDKDYY---RKHGEAMLPVKWM  871 (1025)
T ss_pred             CHHHHHHHHHHHhhhhHHHHhCCCcCcchhhhheeeccc-----CcEEEcccchhHhhhhchhe---eccCccccceecC
Confidence            999999999999999999999999999999999999988     79999999999943322111   1111112245899


Q ss_pred             chhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCC
Q psy4039         418 APEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDP  493 (588)
Q Consensus       418 APE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP  493 (588)
                      |||.+....      +++|+|||||||++||++| |..||.+......   +....+-+.|..||+.+.++|..||+.+|
T Consensus       872 ~PEsl~d~i------FtskSDvWsFGVllWEifslG~~PY~~~~n~~v~~~~~~ggRL~~P~~CP~~ly~lM~~CW~~~p  945 (1025)
T KOG1095|consen  872 PPESLKDGI------FTSKSDVWSFGVLLWEIFSLGATPYPSRSNFEVLLDVLEGGRLDPPSYCPEKLYQLMLQCWKHDP  945 (1025)
T ss_pred             CHHHHhhcc------cccccchhhhHHHHHHHHhCCCCCCCCcchHHHHHHHHhCCccCCCCCCChHHHHHHHHHccCCh
Confidence            999997643      5699999999999999998 7889877432222   22333556788999999999999999999


Q ss_pred             CCCCCHHHHHHHHhhhh
Q psy4039         494 SDRPSAELAATVCQLYL  510 (588)
Q Consensus       494 ~~Rps~~e~l~~L~~~~  510 (588)
                      ++||++..+++-+....
T Consensus       946 e~RP~F~~i~~q~~~i~  962 (1025)
T KOG1095|consen  946 EDRPSFRTIVEQDPAIS  962 (1025)
T ss_pred             hhCccHHHHHhhhhhhh
Confidence            99999999998655443

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=4.6e-38  Score=321.46  Aligned_cols=250  Identities=23%  Similarity=0.297  Sum_probs=199.2

Q ss_pred             cccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCC
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPP  270 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~  270 (588)
                      +..++|++.+.||+|+||+||++.+.  ++.||+|++.....                ......+.+|+.+++.+    +
T Consensus         2 l~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~----------------~~~~~~~~~E~~~l~~l----~   61 (284)
T cd06620           2 LRNEDLETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAK----------------SSVRKQILRELQIMHEC----R   61 (284)
T ss_pred             ccHHHHHHHHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCc----------------chHHHHHHHHHHHHHHc----C
Confidence            34578999999999999999999987  88999999843210                01223456788899887    8


Q ss_pred             CCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4039         271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQL  349 (588)
Q Consensus       271 HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql  349 (588)
                      ||||+++++++.+..                            .+++||||+ +++|.+++...+ .+++..+..++.++
T Consensus        62 h~~i~~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~i  112 (284)
T cd06620          62 SPYIVSFYGAFLNEN----------------------------NICMCMEFMDCGSLDRIYKKGG-PIPVEILGKIAVAV  112 (284)
T ss_pred             CCCcceEeeeEecCC----------------------------EEEEEEecCCCCCHHHHHHhcc-CCCHHHHHHHHHHH
Confidence            999999999987632                            489999999 579999987754 78999999999999


Q ss_pred             HHHHHHHHh-CCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCC
Q psy4039         350 LEGVTHLNM-HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGL  428 (588)
Q Consensus       350 ~~gL~yLH~-~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~  428 (588)
                      +.||.|||+ .+|+||||||+||+++.+     +.++|+|||++........       ....||..|+|||++.+..  
T Consensus       113 ~~~l~~LH~~~~i~H~dl~p~nil~~~~-----~~~~l~d~gl~~~~~~~~~-------~~~~~~~~~~aPE~~~~~~--  178 (284)
T cd06620         113 VEGLTYLYNVHRIMHRDIKPSNILVNSR-----GQIKLCDFGVSGELINSIA-------DTFVGTSTYMSPERIQGGK--  178 (284)
T ss_pred             HHHHHHHHHhcCeeccCCCHHHEEECCC-----CcEEEccCCcccchhhhcc-------CccccCcccCCHHHHccCC--
Confidence            999999997 699999999999999887     7899999999865432111       1356899999999986553  


Q ss_pred             ccCCCCCcCchhhHHHHHHHHhcCCCCCcccccc-----------c---cccccccCCCCC-CccHHHHHHHHHhhhhCC
Q psy4039         429 FSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARN-----------T---DYEVNALPQLNT-NVPEVMRRLVAKLLENDP  493 (588)
Q Consensus       429 ~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~-----------~---~~~~~~~~~~~~-~~~~~l~~Li~~~L~~dP  493 (588)
                          .+.++|||||||++|+|++|..||......           .   .......+.++. .++.++.+|+.+||+.||
T Consensus       179 ----~~~~~Di~slG~~l~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp  254 (284)
T cd06620         179 ----YTVKSDVWSLGISIIELALGKFPFAFSNIDDDGQDDPMGILDLLQQIVQEPPPRLPSSDFPEDLRDFVDACLLKDP  254 (284)
T ss_pred             ----CCccchHHHHHHHHHHHHhCCCCCcccchhhhhhhhhhHHHHHHHHHhhccCCCCCchhcCHHHHHHHHHHhcCCc
Confidence                457899999999999999999999753321           0   001111222322 378899999999999999


Q ss_pred             CCCCCHHHHHHHHhhhhhcCCcccc
Q psy4039         494 SDRPSAELAATVCQLYLWAPKHWLY  518 (588)
Q Consensus       494 ~~Rps~~e~l~~L~~~~~~~h~w~~  518 (588)
                      ++|||++++++         |+|+.
T Consensus       255 ~~Rpt~~e~~~---------~~~~~  270 (284)
T cd06620         255 TERPTPQQLCA---------MPPFI  270 (284)
T ss_pred             ccCcCHHHHhc---------Ccccc
Confidence            99999999999         88876

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=100.00  E-value=1e-37  Score=320.09  Aligned_cols=252  Identities=22%  Similarity=0.237  Sum_probs=195.2

Q ss_pred             ccCCeEEeeeecccCceeEEEEEEC------------------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchh
Q psy4039         194 KVDDIQIGKFIAKGTNAVVYEATFR------------------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLR  255 (588)
Q Consensus       194 ~~~~~~~~~~IG~G~fG~Vy~a~~~------------------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~  255 (588)
                      ..++|++.+.||+|+||.||+|.+.                  +..||+|.+......                .....+
T Consensus         3 ~~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~----------------~~~~~~   66 (296)
T cd05051           3 PRQPLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASD----------------NAREDF   66 (296)
T ss_pred             chhhCcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCH----------------HHHHHH
Confidence            3478999999999999999999875                  256899998532110                022345


Q ss_pred             hhHHHHHhhhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc
Q psy4039         256 LNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC  334 (588)
Q Consensus       256 ~~Ei~il~~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~  334 (588)
                      .+|+.+++.+    +||||+++++++.+..                            ..+++||++ +++|.+++....
T Consensus        67 ~~e~~~l~~l----~~~~i~~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~  114 (296)
T cd05051          67 LKEVKILSRL----SDPNIARLLGVCTVDP----------------------------PLCMIMEYMENGDLNQFLQKHV  114 (296)
T ss_pred             HHHHHHHHhc----CCCCEeEEEEEEecCC----------------------------CcEEEEecCCCCCHHHHHHhcc
Confidence            6789999987    8999999999987631                            389999999 589999997653


Q ss_pred             ----------CCCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccc
Q psy4039         335 ----------AQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYS  404 (588)
Q Consensus       335 ----------~~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~  404 (588)
                                ..+++..++.++.|++.||.|||+++|+||||||+||+++.+     +.++|+|||+++.........  
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH~~~i~H~dlkp~Nili~~~-----~~~~l~dfg~~~~~~~~~~~~--  187 (296)
T cd05051         115 AETSGLACNSKSLSFSTLLYMATQIASGMRYLESLNFVHRDLATRNCLVGKN-----YTIKIADFGMSRNLYSSDYYR--  187 (296)
T ss_pred             cccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCccccccchhceeecCC-----CceEEccccceeecccCccee--
Confidence                      258999999999999999999999999999999999999988     799999999997654322111  


Q ss_pred             cccccccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc--CCCCCcccccccccc----------ccccCC
Q psy4039         405 SADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG--HDNPFYQSARNTDYE----------VNALPQ  472 (588)
Q Consensus       405 ~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt--G~~Pf~~~~~~~~~~----------~~~~~~  472 (588)
                       ......+|+.|+|||++.+..      .+.++|||||||++|||++  |..||........+.          ......
T Consensus       188 -~~~~~~~~~~y~aPE~~~~~~------~~~~~Dv~slG~~l~el~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (296)
T cd05051         188 -VQGRAPLPIRWMAWESVLLGK------FTTKSDVWAFGVTLWEILTLCREQPYEHLTDQQVIENAGHFFRDDGRQIYLP  260 (296)
T ss_pred             -ecCcCCCCceecCHHHhhcCC------CCccchhhhhHHHHHHHHhcCCCCCCCCcChHHHHHHHHhccccccccccCC
Confidence             112345788999999987644      4578999999999999998  678886532111100          011112


Q ss_pred             CCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHh
Q psy4039         473 LNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       473 ~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~  507 (588)
                      .+..+|+++.+++.+||+.||.+|||+.++++.|+
T Consensus       261 ~~~~~~~~l~~li~~cl~~~p~~Rpt~~el~~~L~  295 (296)
T cd05051         261 RPPNCPKDIYELMLECWRRDEEDRPTFREIHLFLQ  295 (296)
T ss_pred             CccCCCHHHHHHHHHHhccChhcCCCHHHHHHHhc
Confidence            34567899999999999999999999999988654

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=100.00  E-value=1.4e-37  Score=319.10  Aligned_cols=255  Identities=22%  Similarity=0.242  Sum_probs=199.0

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      +.|++.+.||.|+||.||+|.+.  +..||+|++....     ..            ..+.+.+|+.+++.+    +|||
T Consensus        12 ~~y~i~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~-----~~------------~~~~~~~e~~~l~~l----~h~~   70 (292)
T cd06644          12 EVWEIIGELGDGAFGKVYKAKNKETGALAAAKVIETKS-----EE------------ELEDYMVEIEILATC----NHPY   70 (292)
T ss_pred             hhhhhhheecCCCCeEEEEEEECCCCceEEEEEeccCC-----HH------------HHHHHHHHHHHHHhC----CCCc
Confidence            67999999999999999999986  7899999984321     00            123455688888887    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++++....                            ..++||||+ +++|..++......+++..+..++.|++.|
T Consensus        71 i~~~~~~~~~~~----------------------------~~~lv~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~  122 (292)
T cd06644          71 IVKLLGAFYWDG----------------------------KLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVICRQMLEA  122 (292)
T ss_pred             EeeeEEEEEeCC----------------------------eEEEEEecCCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHH
Confidence            999999887531                            489999999 578888887655579999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||+++|+||||||+||+++.+     +.++|+|||++........     ......|++.|+|||++.+.... ...
T Consensus       123 l~~lH~~~i~H~dlkp~Nili~~~-----~~~kl~dfg~~~~~~~~~~-----~~~~~~~~~~y~aPE~~~~~~~~-~~~  191 (292)
T cd06644         123 LQYLHSMKIIHRDLKAGNVLLTLD-----GDIKLADFGVSAKNVKTLQ-----RRDSFIGTPYWMAPEVVMCETMK-DTP  191 (292)
T ss_pred             HHHHhcCCeeecCCCcceEEEcCC-----CCEEEccCccceecccccc-----ccceecCCccccCceeecccccc-CCC
Confidence            999999999999999999999877     7899999999875433111     11135688999999998643211 111


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCccccccccc---ccccc--CCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHh
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY---EVNAL--PQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~---~~~~~--~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~  507 (588)
                      ++.++|||||||++|||++|..||.........   .....  ...+..++.++.+++.+||+.||++||+++++++   
T Consensus       192 ~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~---  268 (292)
T cd06644         192 YDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSEPPTLSQPSKWSMEFRDFLKTALDKHPETRPSAAQLLE---  268 (292)
T ss_pred             CCchhhhHhHHHHHHHHhcCCCCCccccHHHHHHHHhcCCCccCCCCcccCHHHHHHHHHHhcCCcccCcCHHHHhc---
Confidence            356899999999999999999999663221111   11111  1234567889999999999999999999999998   


Q ss_pred             hhhhcCCccccC
Q psy4039         508 LYLWAPKHWLYG  519 (588)
Q Consensus       508 ~~~~~~h~w~~~  519 (588)
                            |||+..
T Consensus       269 ------~~~~~~  274 (292)
T cd06644         269 ------HPFVSS  274 (292)
T ss_pred             ------Cccccc
Confidence                  999973

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.8e-37  Score=312.29  Aligned_cols=253  Identities=21%  Similarity=0.256  Sum_probs=200.7

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEEC-CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCC
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLP  269 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~  269 (588)
                      |++..++|.+.+.||+|+||.||+|.+. ++.||||.+.....                  ....+.+|+.+++.+    
T Consensus         1 ~~~~~~~~~i~~~ig~g~~~~v~~~~~~~~~~~~vK~~~~~~~------------------~~~~~~~e~~~l~~l----   58 (261)
T cd05034           1 WEIPRESLKLERKLGAGQFGEVWMGTWNGTTKVAVKTLKPGTM------------------SPEAFLQEAQIMKKL----   58 (261)
T ss_pred             CccchhheeeeeeeccCcceEEEEEEEcCCceEEEEEecCCcc------------------CHHHHHHHHHHHhhC----
Confidence            4567789999999999999999999986 57899999853211                  123466789999887    


Q ss_pred             CCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc-CCCCHHHHHHHHH
Q psy4039         270 PHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC-AQLSMHERVLLFT  347 (588)
Q Consensus       270 ~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~-~~l~~~~~~~i~~  347 (588)
                      +||||+++++++.+..                            ..+++|||+ +++|.+++.... ..+++..+..++.
T Consensus        59 ~h~~i~~~~~~~~~~~----------------------------~~~~v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~  110 (261)
T cd05034          59 RHDKLVQLYAVCSEEE----------------------------PIYIVTEYMSKGSLLDFLKSGEGKKLRLPQLVDMAA  110 (261)
T ss_pred             CCCCEeeeeeeeecCC----------------------------ceEEEEeccCCCCHHHHHhccccCCCCHHHHHHHHH
Confidence            8999999999876532                            389999999 579999998753 4689999999999


Q ss_pred             HHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCC
Q psy4039         348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG  427 (588)
Q Consensus       348 ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~  427 (588)
                      |++.||.|||+++|+|+||||+||+++++     +.++|+|||+++.........    .....++..|+|||.+.+.. 
T Consensus       111 ~i~~al~~lh~~~i~h~di~p~nili~~~-----~~~~l~d~g~~~~~~~~~~~~----~~~~~~~~~y~~PE~~~~~~-  180 (261)
T cd05034         111 QIAEGMAYLESRNYIHRDLAARNILVGEN-----LVCKIADFGLARLIEDDEYTA----REGAKFPIKWTAPEAANYGR-  180 (261)
T ss_pred             HHHHHHHHHHhCCcccCCcchheEEEcCC-----CCEEECccccceeccchhhhh----hhccCCCccccCHHHhccCC-
Confidence            99999999999999999999999999988     899999999998765321110    01223466899999987654 


Q ss_pred             CccCCCCCcCchhhHHHHHHHHhc-CCCCCccccccccc---cccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHH
Q psy4039         428 LFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTDY---EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAA  503 (588)
Q Consensus       428 ~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~~---~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l  503 (588)
                           .+.++||||+||++|||++ |+.||.+.......   ........+..+|.++.+++.+||..||++||+++++.
T Consensus       181 -----~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~l~  255 (261)
T cd05034         181 -----FTIKSDVWSFGILLTEIVTYGRVPYPGMTNREVLEQVERGYRMPRPPNCPEELYDLMLQCWDKDPEERPTFEYLQ  255 (261)
T ss_pred             -----cCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcccCcccCCCHHHHH
Confidence                 3468999999999999998 99999663221111   11112234566789999999999999999999999998


Q ss_pred             HHHhh
Q psy4039         504 TVCQL  508 (588)
Q Consensus       504 ~~L~~  508 (588)
                      +.|+.
T Consensus       256 ~~l~~  260 (261)
T cd05034         256 SFLED  260 (261)
T ss_pred             HHHhc
Confidence            87763

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=100.00  E-value=4e-37  Score=310.17  Aligned_cols=252  Identities=26%  Similarity=0.365  Sum_probs=200.4

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||.||+|.+.  ++.||+|.++.......              .....+.+|+.+++.+    +|+|
T Consensus         2 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~--------------~~~~~~~~ei~~l~~~----~~~~   63 (267)
T cd08224           2 GNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDA--------------KARQDCLKEIDLLKQL----DHPN   63 (267)
T ss_pred             CceeeeeeeccCCceEEEEEEEcCCCCEEEEEEeecccccch--------------hhHHHHHHHHHHHHhC----CCCC
Confidence            68999999999999999999997  88999999853221111              0234566789999887    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh---cCCCCHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER---CAQLSMHERVLLFTQL  349 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~---~~~l~~~~~~~i~~ql  349 (588)
                      |+++++++.+..                            ..+++|||+ +++|.+++...   ...+++.++..++.|+
T Consensus        64 i~~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l  115 (267)
T cd08224          64 VIKYLASFIENN----------------------------ELNIVLELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQL  115 (267)
T ss_pred             eeeeeeeeecCC----------------------------eEEEEEecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHH
Confidence            999999987632                            389999999 57999998752   3468999999999999


Q ss_pred             HHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCc
Q psy4039         350 LEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF  429 (588)
Q Consensus       350 ~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~  429 (588)
                      +.||.|||+.||+||||||+||+++.+     +.++|+|||+++........     .....|++.|+|||.+.+..   
T Consensus       116 ~~~l~~lh~~~i~h~dl~p~nil~~~~-----~~~~l~d~~~~~~~~~~~~~-----~~~~~~~~~y~apE~~~~~~---  182 (267)
T cd08224         116 CSALEHMHSKRIMHRDIKPANVFITAT-----GVVKLGDLGLGRFFSSKTTA-----AHSLVGTPYYMSPERIHENG---  182 (267)
T ss_pred             HHHHHHHHhCCEecCCcChhhEEECCC-----CcEEEeccceeeeccCCCcc-----cceecCCccccCHHHhccCC---
Confidence            999999999999999999999999987     78999999998765432111     12356889999999987654   


Q ss_pred             cCCCCCcCchhhHHHHHHHHhcCCCCCccccccc-----cccccccCCCCC-CccHHHHHHHHHhhhhCCCCCCCHHHHH
Q psy4039         430 SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNT-----DYEVNALPQLNT-NVPEVMRRLVAKLLENDPSDRPSAELAA  503 (588)
Q Consensus       430 ~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~-----~~~~~~~~~~~~-~~~~~l~~Li~~~L~~dP~~Rps~~e~l  503 (588)
                         .+.++|||||||++|+|++|..||.......     .......++.+. .++.++.+++.+||..+|++|||+.+++
T Consensus       183 ---~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~cl~~~p~~Rp~~~~il  259 (267)
T cd08224         183 ---YNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEKCDYPPLPADHYSEELRDLVSRCINPDPEKRPDISYVL  259 (267)
T ss_pred             ---CCchhcHHHHHHHHHHHHHCCCCcccCCccHHHHHhhhhcCCCCCCChhhcCHHHHHHHHHHcCCCcccCCCHHHHH
Confidence               4468999999999999999999996542211     111122333343 6788999999999999999999999999


Q ss_pred             HHHhhh
Q psy4039         504 TVCQLY  509 (588)
Q Consensus       504 ~~L~~~  509 (588)
                      +.++.+
T Consensus       260 ~~~~~~  265 (267)
T cd08224         260 QVAKEM  265 (267)
T ss_pred             HHHHHh
Confidence            877643

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=100.00  E-value=1e-37  Score=315.77  Aligned_cols=254  Identities=21%  Similarity=0.309  Sum_probs=198.1

Q ss_pred             ccCCeEEeeeecccCceeEEEEEEC-----CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCC
Q psy4039         194 KVDDIQIGKFIAKGTNAVVYEATFR-----GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENL  268 (588)
Q Consensus       194 ~~~~~~~~~~IG~G~fG~Vy~a~~~-----g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l  268 (588)
                      ...+|++.+.||+|+||.||+|.+.     +..||+|.+.....   .             ...+.+.+|+.+++.+   
T Consensus         2 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~---~-------------~~~~~~~~e~~~l~~l---   62 (267)
T cd05066           2 DASCIKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYT---E-------------KQRRDFLSEASIMGQF---   62 (267)
T ss_pred             CHHHeEeeeeecccCCCceEEEEEecCCCCceEEEEEECCCCCC---H-------------HHHHHHHHHHHHHHhC---
Confidence            3478999999999999999999874     34799999843110   0             0123456788888887   


Q ss_pred             CCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHH
Q psy4039         269 PPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFT  347 (588)
Q Consensus       269 ~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~  347 (588)
                       +||||+++++++.+..                            ..+++|||+ +++|.+++......+++.++..++.
T Consensus        63 -~h~~i~~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~  113 (267)
T cd05066          63 -DHPNIIHLEGVVTKSK----------------------------PVMIVTEYMENGSLDAFLRKHDGQFTVIQLVGMLR  113 (267)
T ss_pred             -CCCCcceEEEEEecCC----------------------------ccEEEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHH
Confidence             8999999999986532                            389999999 5799999987655789999999999


Q ss_pred             HHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCC
Q psy4039         348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG  427 (588)
Q Consensus       348 ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~  427 (588)
                      |++.||.|||+++++||||||+|||++.+     +.++|+|||+++...........  .....++..|+|||++.+.. 
T Consensus       114 ~i~~~l~~lH~~~i~h~dlkp~nili~~~-----~~~~l~dfg~~~~~~~~~~~~~~--~~~~~~~~~y~~pe~~~~~~-  185 (267)
T cd05066         114 GIASGMKYLSDMGYVHRDLAARNILVNSN-----LVCKVSDFGLSRVLEDDPEAAYT--TRGGKIPIRWTAPEAIAYRK-  185 (267)
T ss_pred             HHHHHHHHHHHCCEeehhhchhcEEECCC-----CeEEeCCCCcccccccccceeee--cCCCccceeecCHhHhccCc-
Confidence            99999999999999999999999999887     78999999999876542211111  11223467899999997654 


Q ss_pred             CccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHH
Q psy4039         428 LFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAA  503 (588)
Q Consensus       428 ~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l  503 (588)
                           .+.++|||||||++||+++ |..||........   .......+.+..+|+.+.+++.+||+.+|.+||++.+++
T Consensus       186 -----~~~~~Dv~slG~~l~ell~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~  260 (267)
T cd05066         186 -----FTSASDVWSYGIVMWEVMSYGERPYWEMSNQDVIKAIEEGYRLPAPMDCPAALHQLMLDCWQKDRNERPKFEQIV  260 (267)
T ss_pred             -----cCchhhhHHHHHHHHHHhcCCCCCcccCCHHHHHHHHhCCCcCCCCCCCCHHHHHHHHHHcccCchhCCCHHHHH
Confidence                 4578999999999999886 9999976322111   111122334557889999999999999999999999999


Q ss_pred             HHHhh
Q psy4039         504 TVCQL  508 (588)
Q Consensus       504 ~~L~~  508 (588)
                      +.|+.
T Consensus       261 ~~l~~  265 (267)
T cd05066         261 SILDK  265 (267)
T ss_pred             HHHHh
Confidence            87764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=100.00  E-value=1.8e-37  Score=322.24  Aligned_cols=260  Identities=22%  Similarity=0.269  Sum_probs=200.2

Q ss_pred             CccccccCCeEEeeeecccCceeEEEEEEC---------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHH
Q psy4039         189 DVDDVKVDDIQIGKFIAKGTNAVVYEATFR---------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNED  259 (588)
Q Consensus       189 ~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~---------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei  259 (588)
                      ..+.+..++|.+++.||+|+||.||+|.+.         ...||+|++.....   ..             ....+.+|+
T Consensus         5 ~~~~~~~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~---~~-------------~~~~~~~E~   68 (314)
T cd05099           5 PKWEFPRDRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNAT---DK-------------DLADLISEM   68 (314)
T ss_pred             ccccccHHHeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCC---hH-------------HHHHHHHHH
Confidence            446667789999999999999999999763         45799999853211   00             112355688


Q ss_pred             HHHhhhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc----
Q psy4039         260 MLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC----  334 (588)
Q Consensus       260 ~il~~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~----  334 (588)
                      .+++.+   ..||||+++++++.+..                            ..+++|||+ +|+|.+++....    
T Consensus        69 ~~l~~l---~~h~~iv~~~~~~~~~~----------------------------~~~lv~e~~~~g~L~~~i~~~~~~~~  117 (314)
T cd05099          69 ELMKLI---GKHKNIINLLGVCTQEG----------------------------PLYVIVEYAAKGNLREFLRARRPPGP  117 (314)
T ss_pred             HHHHhc---cCCCCeeeEEEEEccCC----------------------------ceEEEEecCCCCcHHHHHHhcCCCcc
Confidence            888776   46999999999887531                            389999999 689999997632    


Q ss_pred             -----------CCCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCcccc
Q psy4039         335 -----------AQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQY  403 (588)
Q Consensus       335 -----------~~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~  403 (588)
                                 ..+++.++..++.|++.||.|||++||+||||||+|||++.+     +.+||+|||+++..........
T Consensus       118 ~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~gi~H~dlkp~Nill~~~-----~~~kL~Dfg~~~~~~~~~~~~~  192 (314)
T cd05099         118 DYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLESRRCIHRDLAARNVLVTED-----NVMKIADFGLARGVHDIDYYKK  192 (314)
T ss_pred             cccccccCCcccccCHHHHHHHHHHHHHHHHHHHHCCeeeccccceeEEEcCC-----CcEEEccccccccccccccccc
Confidence                       258999999999999999999999999999999999999877     7899999999986543211110


Q ss_pred             ccccccccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCccccccccc---cccccCCCCCCccH
Q psy4039         404 SSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTDY---EVNALPQLNTNVPE  479 (588)
Q Consensus       404 ~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~~---~~~~~~~~~~~~~~  479 (588)
                      .   ....+++.|||||++.+..      ++.++|||||||++|||++ |..||........+   ........+..++.
T Consensus       193 ~---~~~~~~~~y~aPE~~~~~~------~~~~~DiwslG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (314)
T cd05099         193 T---SNGRLPVKWMAPEALFDRV------YTHQSDVWSFGILMWEIFTLGGSPYPGIPVEELFKLLREGHRMDKPSNCTH  263 (314)
T ss_pred             c---ccCCCCccccCHHHHccCC------cCccchhhHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCH
Confidence            1   1123456899999987654      4578999999999999999 88998663221111   11222345567889


Q ss_pred             HHHHHHHHhhhhCCCCCCCHHHHHHHHhhh
Q psy4039         480 VMRRLVAKLLENDPSDRPSAELAATVCQLY  509 (588)
Q Consensus       480 ~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~  509 (588)
                      ++++++.+||+.||++|||+.++++.|+..
T Consensus       264 ~l~~li~~cl~~~p~~Rps~~~ll~~l~~~  293 (314)
T cd05099         264 ELYMLMRECWHAVPTQRPTFKQLVEALDKV  293 (314)
T ss_pred             HHHHHHHHHcCCCcccCcCHHHHHHHHHHH
Confidence            999999999999999999999999977754

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=100.00  E-value=1.4e-37  Score=316.76  Aligned_cols=255  Identities=23%  Similarity=0.318  Sum_probs=195.8

Q ss_pred             ccCCeEEeeeecccCceeEEEEEEC-------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhc
Q psy4039         194 KVDDIQIGKFIAKGTNAVVYEATFR-------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVE  266 (588)
Q Consensus       194 ~~~~~~~~~~IG~G~fG~Vy~a~~~-------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~  266 (588)
                      ..++|.+.+.||+|+||.||+|.+.       +..||+|.+......                .....+.+|+.+++.+ 
T Consensus         4 ~~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~----------------~~~~~~~~e~~~l~~l-   66 (277)
T cd05036           4 PRDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSE----------------QDESDFLMEALIMSKF-   66 (277)
T ss_pred             CHHHcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCH----------------HHHHHHHHHHHHHHhC-
Confidence            3478999999999999999999985       367999987421110                0123456688888887 


Q ss_pred             CCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc------CCCCH
Q psy4039         267 NLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC------AQLSM  339 (588)
Q Consensus       267 ~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~------~~l~~  339 (588)
                         +||||+++++++.+..                            ..+++|||+ +++|.+++....      ..+++
T Consensus        67 ---~~~~i~~~~~~~~~~~----------------------------~~~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~  115 (277)
T cd05036          67 ---NHQNIVRLIGVSFERL----------------------------PRFILLELMAGGDLKSFLRENRPRPERPSSLTM  115 (277)
T ss_pred             ---CCCCEeeEEEEEccCC----------------------------CcEEEEecCCCCCHHHHHHHhCCCCCCCCCCCH
Confidence               9999999999887632                            278999999 689999998653      25899


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccch
Q psy4039         340 HERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAP  419 (588)
Q Consensus       340 ~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~AP  419 (588)
                      ..+..++.||+.||.|||+++++||||||+|||++.+.+.  ..+||+|||+++.........   ......+++.|+||
T Consensus       116 ~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~nil~~~~~~~--~~~kl~dfg~~~~~~~~~~~~---~~~~~~~~~~y~aP  190 (277)
T cd05036         116 KDLLFCARDVAKGCKYLEENHFIHRDIAARNCLLTCKGPG--RVAKIADFGMARDIYRASYYR---KGGRAMLPIKWMPP  190 (277)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCEeecccchheEEEeccCCC--cceEeccCccccccCCcccee---cCCCCCccHhhCCH
Confidence            9999999999999999999999999999999999865221  468999999998753321111   01122345689999


Q ss_pred             hHHhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCccccccccc---cccccCCCCCCccHHHHHHHHHhhhhCCCC
Q psy4039         420 EVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTDY---EVNALPQLNTNVPEVMRRLVAKLLENDPSD  495 (588)
Q Consensus       420 E~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~~---~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~  495 (588)
                      |++.+..      ++.++|||||||++|||++ |..||.+.......   .....+..+..+|..+.+++.+||+.||++
T Consensus       191 E~~~~~~------~~~~~DiwslG~il~el~~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~cl~~~p~~  264 (277)
T cd05036         191 EAFLDGI------FTSKTDVWSFGVLLWEIFSLGYMPYPGRTNQEVMEFVTGGGRLDPPKGCPGPVYRIMTDCWQHTPED  264 (277)
T ss_pred             HHHhcCC------cCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCCccc
Confidence            9997654      4578999999999999997 99999764221111   112233455678999999999999999999


Q ss_pred             CCCHHHHHHHHh
Q psy4039         496 RPSAELAATVCQ  507 (588)
Q Consensus       496 Rps~~e~l~~L~  507 (588)
                      |||+.++++.|+
T Consensus       265 Rps~~~vl~~l~  276 (277)
T cd05036         265 RPNFATILERIQ  276 (277)
T ss_pred             CcCHHHHHHHhh
Confidence            999999988654

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=100.00  E-value=1.1e-37  Score=318.74  Aligned_cols=260  Identities=18%  Similarity=0.185  Sum_probs=196.5

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      .++|...+.||+|+||.||++.+.  +..||||.+......                .....+.+|+.++.++   ..||
T Consensus         3 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~----------------~~~~~~~~e~~~l~~~---~~~~   63 (288)
T cd06616           3 AEDLKDLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDE----------------KEQKRLLMDLDVVMRS---SDCP   63 (288)
T ss_pred             HHHhHHHHHhCCCCceEEEEEEECCCCCEEEEEEehhccCh----------------HHHHHHHHHHHHHHHh---cCCC
Confidence            367778889999999999999986  789999998532111                0223455688888776   4599


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHH---Hh-cCCCCHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLR---ER-CAQLSMHERVLLFTQ  348 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~---~~-~~~l~~~~~~~i~~q  348 (588)
                      ||+++++++.+..                            ..+++||++.++|.++..   .. ...+++..+..++.|
T Consensus        64 ~iv~~~~~~~~~~----------------------------~~~~~~e~~~~~l~~l~~~~~~~~~~~l~~~~~~~i~~~  115 (288)
T cd06616          64 YIVKFYGALFREG----------------------------DCWICMELMDISLDKFYKYVYEVLKSVIPEEILGKIAVA  115 (288)
T ss_pred             CEeeeeeEEecCC----------------------------cEEEEEecccCCHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence            9999999887531                            388999999877665443   22 347999999999999


Q ss_pred             HHHHHHHHHhC-CceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCC
Q psy4039         349 LLEGVTHLNMH-RTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG  427 (588)
Q Consensus       349 l~~gL~yLH~~-~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~  427 (588)
                      +++||+|||+. +|+||||||+||+++.+     +.++|+|||+++........      ....||+.|+|||++.+...
T Consensus       116 i~~~l~~lh~~~~i~H~dlkp~Nil~~~~-----~~~kl~dfg~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~  184 (288)
T cd06616         116 TVKALNYLKEELKIIHRDVKPSNILLDRN-----GNIKLCDFGISGQLVDSIAK------TRDAGCRPYMAPERIDPSAR  184 (288)
T ss_pred             HHHHHHHHhhcCCeeccCCCHHHEEEccC-----CcEEEeecchhHHhccCCcc------ccccCccCccCHHHhccccc
Confidence            99999999974 99999999999999987     78999999999765432111      13458999999999875520


Q ss_pred             CccCCCCCcCchhhHHHHHHHHhcCCCCCccccccc----cccccccC----CCCCCccHHHHHHHHHhhhhCCCCCCCH
Q psy4039         428 LFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNT----DYEVNALP----QLNTNVPEVMRRLVAKLLENDPSDRPSA  499 (588)
Q Consensus       428 ~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~----~~~~~~~~----~~~~~~~~~l~~Li~~~L~~dP~~Rps~  499 (588)
                         ..++.++|||||||++|||++|+.||.......    .......+    ..+..++.++.+|+.+||+.||++|||+
T Consensus       185 ---~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~  261 (288)
T cd06616         185 ---DGYDVRSDVWSLGITLYEVATGKFPYPKWNSVFDQLTQVVKGDPPILSNSEEREFSPSFVNFINLCLIKDESKRPKY  261 (288)
T ss_pred             ---cCCcchhhhhHHHHHHHHHHhCCCCchhcchHHHHHhhhcCCCCCcCCCcCCCccCHHHHHHHHHHccCChhhCcCH
Confidence               014578999999999999999999996532100    00001111    1223578999999999999999999999


Q ss_pred             HHHHHHHhhhhhcCCccccCCCCCh
Q psy4039         500 ELAATVCQLYLWAPKHWLYGATPSH  524 (588)
Q Consensus       500 ~e~l~~L~~~~~~~h~w~~~~~~~~  524 (588)
                      ++++.         |||++......
T Consensus       262 ~~i~~---------~~~~~~~~~~~  277 (288)
T cd06616         262 KELLE---------HPFIKDYEERN  277 (288)
T ss_pred             HHHhc---------Chhhhchhhcc
Confidence            99999         99997544333

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=100.00  E-value=1.4e-37  Score=312.16  Aligned_cols=244  Identities=23%  Similarity=0.344  Sum_probs=196.0

Q ss_pred             CeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCce
Q psy4039         197 DIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNV  274 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNI  274 (588)
                      +|++.+.||.|+||.||++.+.  +..||+|.++.....                ...+.+.+|+.+++.+    +||||
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~----------------~~~~~~~~e~~~l~~l----~h~~i   60 (255)
T cd08219           1 QYNVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSS----------------SAVEDSRKEAVLLAKM----KHPNI   60 (255)
T ss_pred             CceEEEEeeccCCeEEEEEEEcCCCceEEEEEEEcCcch----------------HHHHHHHHHHHHHHhC----CCCCc
Confidence            5889999999999999999987  789999998532111                0123445688888877    99999


Q ss_pred             EEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh-cCCCCHHHHHHHHHHHHHH
Q psy4039         275 VVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER-CAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       275 V~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~-~~~l~~~~~~~i~~ql~~g  352 (588)
                      +++++++.+..                            .++++|||+ +++|.+++... ...+++..+..++.|++.|
T Consensus        61 ~~~~~~~~~~~----------------------------~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~a  112 (255)
T cd08219          61 VAFKESFEADG----------------------------HLYIVMEYCDGGDLMQKIKLQRGKLFPEDTILQWFVQMCLG  112 (255)
T ss_pred             ceEEEEEEECC----------------------------EEEEEEeeCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHH
Confidence            99999987632                            499999999 57999998763 3468999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||++||+|+||||+||+++++     +.++|+|||.++........     .....|++.|+|||++.+..      
T Consensus       113 l~~lH~~~i~H~dl~p~nili~~~-----~~~~l~dfg~~~~~~~~~~~-----~~~~~~~~~~~aPE~~~~~~------  176 (255)
T cd08219         113 VQHIHEKRVLHRDIKSKNIFLTQN-----GKVKLGDFGSARLLTSPGAY-----ACTYVGTPYYVPPEIWENMP------  176 (255)
T ss_pred             HHHHhhCCcccCCCCcceEEECCC-----CcEEEcccCcceeecccccc-----cccccCCccccCHHHHccCC------
Confidence            999999999999999999999887     78999999999765432111     11356899999999987654      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHH
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAAT  504 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~  504 (588)
                      .+.++||||||+++|+|++|..||........   .........+..++..+++++.+||+.||++|||+.++++
T Consensus       177 ~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~  251 (255)
T cd08219         177 YNNKSDIWSLGCILYELCTLKHPFQANSWKNLILKVCQGSYKPLPSHYSYELRSLIKQMFKRNPRSRPSATTILS  251 (255)
T ss_pred             cCchhhhhhhchhheehhhccCCCCCCCHHHHHHHHhcCCCCCCCcccCHHHHHHHHHHHhCCcccCCCHHHHhh
Confidence            45789999999999999999999976432211   1122333456678899999999999999999999999876

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=100.00  E-value=1.1e-37  Score=314.83  Aligned_cols=251  Identities=26%  Similarity=0.365  Sum_probs=197.3

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||.||+|.+.  +..||||.+.......              ......+.+|+.+++.+    .|||
T Consensus         2 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~--------------~~~~~~~~~e~~~l~~~----~h~~   63 (267)
T cd08229           2 ANFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMD--------------AKARADCIKEIDLLKQL----NHPN   63 (267)
T ss_pred             chhhhhhhhcccCCeEEEEEeecCCCceEEEEeeeehhhhh--------------HHHHHHHHHHHHHHHHc----cCCc
Confidence            67899999999999999999975  8899999885322110              00123556789999887    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh---cCCCCHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER---CAQLSMHERVLLFTQL  349 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~---~~~l~~~~~~~i~~ql  349 (588)
                      |+++++++.+..                            ..+++|||+ +++|.+++...   ...+++..++.++.|+
T Consensus        64 i~~~~~~~~~~~----------------------------~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i  115 (267)
T cd08229          64 VIKYYASFIEDN----------------------------ELNIVLELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQL  115 (267)
T ss_pred             hhhhhheeEeCC----------------------------eEEEEEEecCCCCHHHHHHHhhccCCCCCHHHHHHHHHHH
Confidence            999999887632                            489999999 57999998742   3468999999999999


Q ss_pred             HHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCc
Q psy4039         350 LEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF  429 (588)
Q Consensus       350 ~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~  429 (588)
                      +.||.|||++||+|+||||+||+++.+     +.++|+|||++.........     .....|+..|+|||++.+..   
T Consensus       116 ~~~l~~LH~~~i~H~dl~p~nili~~~-----~~~~l~dfg~~~~~~~~~~~-----~~~~~~~~~~~ape~~~~~~---  182 (267)
T cd08229         116 CSALEHMHSRRVMHRDIKPANVFITAT-----GVVKLGDLGLGRFFSSKTTA-----AHSLVGTPYYMSPERIHENG---  182 (267)
T ss_pred             HHHHHHHHHCCeecCCCCHHHEEEcCC-----CCEEECcchhhhccccCCcc-----cccccCCcCccCHHHhcCCC---
Confidence            999999999999999999999999877     78999999998765432211     11346899999999987654   


Q ss_pred             cCCCCCcCchhhHHHHHHHHhcCCCCCccccccc-----cccccccCCC-CCCccHHHHHHHHHhhhhCCCCCCCHHHHH
Q psy4039         430 SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNT-----DYEVNALPQL-NTNVPEVMRRLVAKLLENDPSDRPSAELAA  503 (588)
Q Consensus       430 ~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~-----~~~~~~~~~~-~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l  503 (588)
                         .+.++||||||+++|||++|..||.+.....     .......++. +..+++++++++.+||+.||++|||+++++
T Consensus       183 ---~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~i~  259 (267)
T cd08229         183 ---YNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQCDYPPLPSDHYSEELRQLVNMCINPDPEKRPDITYVY  259 (267)
T ss_pred             ---ccchhhHHHHHHHHHHHHhCCCCcccccchHHHHhhhhhcCCCCCCCcccccHHHHHHHHHhcCCCcccCCCHHHHH
Confidence               3467999999999999999999997532210     0111112222 345788999999999999999999999998


Q ss_pred             HHHhh
Q psy4039         504 TVCQL  508 (588)
Q Consensus       504 ~~L~~  508 (588)
                      +.+..
T Consensus       260 ~~~~~  264 (267)
T cd08229         260 DVAKR  264 (267)
T ss_pred             HHHhh
Confidence            87664

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>KOG0983|consensus

Probab=100.00  E-value=1.1e-38  Score=307.95  Aligned_cols=279  Identities=20%  Similarity=0.237  Sum_probs=217.7

Q ss_pred             CccccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhc
Q psy4039         189 DVDDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVE  266 (588)
Q Consensus       189 ~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~  266 (588)
                      +....++++++....||.|+.|.|++++++  |...|||.|+..+...+.                +++...+.++... 
T Consensus        85 ~r~~~dindl~~l~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~Nkee~----------------kRILmDldvv~~s-  147 (391)
T KOG0983|consen   85 QRYQADINDLENLGDLGSGTCGQVWKMRFRSTGHIIAVKQMRRTGNKEEN----------------KRILMDLDVVLKS-  147 (391)
T ss_pred             cccccChHHhhhHHhhcCCCccceEEEEEcccceEEEEEeecccCCHHHH----------------HHHHHhhhHHhhc-
Confidence            334556688889999999999999999998  699999999754322111                1223344444332 


Q ss_pred             CCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHH
Q psy4039         267 NLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLF  346 (588)
Q Consensus       267 ~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~  346 (588)
                        -..|+||+.+|+|....                            .+++.||.|...++++++.-..+++|..+-++.
T Consensus       148 --~dcpyIV~c~GyFi~n~----------------------------dV~IcMelMs~C~ekLlkrik~piPE~ilGk~t  197 (391)
T KOG0983|consen  148 --HDCPYIVQCFGYFITNT----------------------------DVFICMELMSTCAEKLLKRIKGPIPERILGKMT  197 (391)
T ss_pred             --cCCCeeeeeeeEEeeCc----------------------------hHHHHHHHHHHHHHHHHHHhcCCchHHhhhhhH
Confidence              24799999999998632                            388999999877888887665589999999999


Q ss_pred             HHHHHHHHHHHh-CCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcC
Q psy4039         347 TQLLEGVTHLNM-HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALAT  425 (588)
Q Consensus       347 ~ql~~gL~yLH~-~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~  425 (588)
                      ..+++||.||-+ ++|+|||+||+|||+|+.     +++||||||++-..-+.      ...+...|-+.|||||.+.-.
T Consensus       198 va~v~AL~YLKeKH~viHRDvKPSNILlDe~-----GniKlCDFGIsGrlvdS------kAhtrsAGC~~YMaPERidp~  266 (391)
T KOG0983|consen  198 VAIVKALYYLKEKHGVIHRDVKPSNILLDER-----GNIKLCDFGISGRLVDS------KAHTRSAGCAAYMAPERIDPP  266 (391)
T ss_pred             HHHHHHHHHHHHhcceeecccCccceEEccC-----CCEEeecccccceeecc------cccccccCCccccCccccCCC
Confidence            999999999997 699999999999999988     99999999998654332      222356799999999999654


Q ss_pred             CCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccc----cccccCCCC--CCccHHHHHHHHHhhhhCCCCCCCH
Q psy4039         426 PGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY----EVNALPQLN--TNVPEVMRRLVAKLLENDPSDRPSA  499 (588)
Q Consensus       426 ~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~----~~~~~~~~~--~~~~~~l~~Li~~~L~~dP~~Rps~  499 (588)
                      ..+   .|.-++||||||++++||.||..||.+.......    .....|.++  ..+++++++++..||++|+.+||..
T Consensus       267 ~~~---kYDiRaDVWSlGITlveLaTg~yPy~~c~tdFe~ltkvln~ePP~L~~~~gFSp~F~~fv~~CL~kd~r~RP~Y  343 (391)
T KOG0983|consen  267 DKP---KYDIRADVWSLGITLVELATGQYPYKGCKTDFEVLTKVLNEEPPLLPGHMGFSPDFQSFVKDCLTKDHRKRPKY  343 (391)
T ss_pred             CCC---ccchhhhhhhhccchhhhhcccCCCCCCCccHHHHHHHHhcCCCCCCcccCcCHHHHHHHHHHhhcCcccCcch
Confidence            211   1456799999999999999999999874222111    112223333  3489999999999999999999999


Q ss_pred             HHHHHHHhhhhhcCCccccCCCCChhHHHHHHHhhhcc
Q psy4039         500 ELAATVCQLYLWAPKHWLYGATPSHNEIMQWLLTLTTK  537 (588)
Q Consensus       500 ~e~l~~L~~~~~~~h~w~~~~~~~~~~~~~~l~~~~~~  537 (588)
                      .++++         |||+....+...++.+|......+
T Consensus       344 ~~Ll~---------h~Fi~~ye~a~~dVa~WF~dV~~~  372 (391)
T KOG0983|consen  344 NKLLE---------HPFIKRYETAEVDVASWFKDVMAK  372 (391)
T ss_pred             HHHhc---------CcceeecchhhccHHHHHHHHHhc
Confidence            99999         999998888889999999876544

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=100.00  E-value=1.8e-37  Score=321.00  Aligned_cols=260  Identities=24%  Similarity=0.267  Sum_probs=196.8

Q ss_pred             CeEEeeeecccCceeEEEEEEC----CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         197 DIQIGKFIAKGTNAVVYEATFR----GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~~~----g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      .|++.+.||+|+||.||+|.+.    +..||||.+.......+              ...+...+|+.++..+    +||
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~--------------~~~~~~~~e~~~l~~l----~h~   62 (316)
T cd07842           1 KYEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYT--------------GISQSACREIALLREL----KHE   62 (316)
T ss_pred             CceEEEEeccCCcEEEEEEEecCCCCCCeEEEEEecccccccc--------------CccHHHHHHHHHHHhc----CCC
Confidence            4788999999999999999984    58999999854221000              1223445688898887    899


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhc----CCCCHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERC----AQLSMHERVLLFTQ  348 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~----~~l~~~~~~~i~~q  348 (588)
                      ||+++++++.+..                          ...+++||||++++|.+++....    ..+++..++.++.|
T Consensus        63 ~i~~~~~~~~~~~--------------------------~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~q  116 (316)
T cd07842          63 NVVSLVEVFLEHA--------------------------DKSVYLLFDYAEHDLWQIIKFHRQAKRVSIPPSMVKSLLWQ  116 (316)
T ss_pred             CccceEEEEeCCC--------------------------CceEEEEEeCCCcCHHHHHHhhccCCCcCcCHHHHHHHHHH
Confidence            9999999987631                          12599999999888888876431    26899999999999


Q ss_pred             HHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCC
Q psy4039         349 LLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGL  428 (588)
Q Consensus       349 l~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~  428 (588)
                      ++.||.|||+++|+||||||+||+++.++.. .+.+||+|||+++........  ........||+.|+|||++.+... 
T Consensus       117 i~~~l~~lH~~~i~h~dlkp~Nil~~~~~~~-~~~~kl~Dfg~~~~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~-  192 (316)
T cd07842         117 ILNGVHYLHSNWVLHRDLKPANILVMGEGPE-RGVVKIGDLGLARLFNAPLKP--LADLDPVVVTIWYRAPELLLGARH-  192 (316)
T ss_pred             HHHHHHHHHhCCEeeCCCCHHHEEEcCCCCc-cceEEECCCccccccCCCccc--ccccCCccccccccCHHHHhCCCC-
Confidence            9999999999999999999999999983221 189999999999876442221  111124568999999999865431 


Q ss_pred             ccCCCCCcCchhhHHHHHHHHhcCCCCCccccccc---------------------------------ccc----ccccC
Q psy4039         429 FSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNT---------------------------------DYE----VNALP  471 (588)
Q Consensus       429 ~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~---------------------------------~~~----~~~~~  471 (588)
                          ++.++|||||||++|||++|++||.+.....                                 .+.    .....
T Consensus       193 ----~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (316)
T cd07842         193 ----YTKAIDIWAIGCIFAELLTLEPIFKGREAKIKKSNPFQRDQLERIFEVLGTPTEKDWPDIKKMPEYDTLMKDFKTK  268 (316)
T ss_pred             ----CCcHHHHHHHHHHHHHHHhcCCCCcCCcccccccchhHHHHHHHHHHHhCCCchhHHHHHhhcccchhhhhhccCC
Confidence                3567999999999999999999997532211                                 000    00000


Q ss_pred             CCC-----------CCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccc
Q psy4039         472 QLN-----------TNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWL  517 (588)
Q Consensus       472 ~~~-----------~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~  517 (588)
                      ..+           ...+.++.+++.+||+.||++|||++++++         |||+
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~eil~---------~~~f  316 (316)
T cd07842         269 TYPSNSLAKWMEKHKKPDSQGFDLLRKLLEYDPTKRITAEEALE---------HPYF  316 (316)
T ss_pred             CCCCccHHHHHHhccCCCHHHHHHHHHHhcCCcccCcCHHHHhc---------CCCC
Confidence            011           145678999999999999999999999999         9996

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=100.00  E-value=1.9e-37  Score=310.51  Aligned_cols=249  Identities=23%  Similarity=0.326  Sum_probs=199.4

Q ss_pred             CeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCce
Q psy4039         197 DIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNV  274 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNI  274 (588)
                      +|++.+.||+|+||.||+|...  +..+|||.+........               ....+.+|+.+++.+    +||||
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~---------------~~~~~~~e~~~l~~~----~~~~i   61 (256)
T cd08220           1 KYEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKD---------------ERLAAQNECQVLKLL----SHPNI   61 (256)
T ss_pred             CceEEEEecccCceEEEEEEEcCCCcEEEEEEEeccccccH---------------HHHHHHHHHHHHhhC----CCCch
Confidence            5889999999999999999886  78999999854321110               123456788899887    89999


Q ss_pred             EEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh-cCCCCHHHHHHHHHHHHHH
Q psy4039         275 VVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER-CAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       275 V~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~-~~~l~~~~~~~i~~ql~~g  352 (588)
                      +++++.+...                            ...++||||+ +++|.+++... ...+++..+..++.|+++|
T Consensus        62 ~~~~~~~~~~----------------------------~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~  113 (256)
T cd08220          62 IEYYENFLED----------------------------KALMIVMEYAPGGTLAEYIQKRCNSLLDEDTILHFFVQILLA  113 (256)
T ss_pred             hheeeeEecC----------------------------CEEEEEEecCCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHH
Confidence            9999887652                            1489999999 57999999875 3358999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||++||+||||||+||+++.+.    ..++|+|||++........      .....|+..|+|||.+.+..      
T Consensus       114 l~~lh~~~i~h~dl~~~nil~~~~~----~~~~l~d~~~~~~~~~~~~------~~~~~~~~~y~aPE~~~~~~------  177 (256)
T cd08220         114 LHHVHTKLILHRDLKTQNILLDKHK----MVVKIGDFGISKILSSKSK------AYTVVGTPCYISPELCEGKP------  177 (256)
T ss_pred             HHHHHhCCeecCCCCHHHEEEcCCC----CEEEEccCCCceecCCCcc------ccccccCCcccCchhccCCC------
Confidence            9999999999999999999998652    4689999999987644221      11356889999999987543      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCccccccccc---cccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhh
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY---EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLY  509 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~---~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~  509 (588)
                      .+.++||||||+++|+|++|+.||.........   ......+++..+++++++++.+||+.||++|||++++++     
T Consensus       178 ~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~ll~-----  252 (256)
T cd08220         178 YNQKSDIWALGCVLYELASLKRAFEAANLPALVLKIMSGTFAPISDRYSPDLRQLILSMLNLDPSKRPQLSQIMA-----  252 (256)
T ss_pred             CCcccchHHHHHHHHHHHhCCCCcccCchHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHccCChhhCCCHHHHhh-----
Confidence            457899999999999999999999764221111   112233456678999999999999999999999999999     


Q ss_pred             hhcCCccc
Q psy4039         510 LWAPKHWL  517 (588)
Q Consensus       510 ~~~~h~w~  517 (588)
                          |||+
T Consensus       253 ----~p~~  256 (256)
T cd08220         253 ----QPIC  256 (256)
T ss_pred             ----CCCC
Confidence                9996

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=100.00  E-value=1.8e-37  Score=311.44  Aligned_cols=251  Identities=23%  Similarity=0.293  Sum_probs=201.0

Q ss_pred             CeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCce
Q psy4039         197 DIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNV  274 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNI  274 (588)
                      +|++.+.||.|+||.||++.+.  +..||+|.+.......               ...+.+.+|+.+++.+    +||||
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~---------------~~~~~~~~e~~~l~~l----~~~~i   61 (265)
T cd08217           1 DYEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTE---------------KEKQQLVSEVNILREL----KHPNI   61 (265)
T ss_pred             CceeeeeeccCCCeEEEEeeecCCCCEEEEEEEecccCCH---------------HHHHHHHHHHHHHHhc----CCCcc
Confidence            5888999999999999999886  7899999985322111               0123456688899887    99999


Q ss_pred             EEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh---cCCCCHHHHHHHHHHHH
Q psy4039         275 VVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER---CAQLSMHERVLLFTQLL  350 (588)
Q Consensus       275 V~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~---~~~l~~~~~~~i~~ql~  350 (588)
                      +++++++.+..                          ...++++|||+ +++|.+++...   ...+++..++.++.|++
T Consensus        62 ~~~~~~~~~~~--------------------------~~~~~~~~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~  115 (265)
T cd08217          62 VRYYDRIIDRS--------------------------NQTLYIVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLL  115 (265)
T ss_pred             ceeeeeeecCC--------------------------CCEEEEEehhccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHH
Confidence            99998876421                          22489999999 57999999764   34799999999999999


Q ss_pred             HHHHHHH-----hCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcC
Q psy4039         351 EGVTHLN-----MHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALAT  425 (588)
Q Consensus       351 ~gL~yLH-----~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~  425 (588)
                      .||.|||     +.+|+|+||||+||+++.+     +.+||+|||++.........     .....|++.|+|||++.+.
T Consensus       116 ~~l~~lH~~~~~~~~i~h~dl~p~nili~~~-----~~~kl~d~g~~~~~~~~~~~-----~~~~~~~~~~~~pE~~~~~  185 (265)
T cd08217         116 LALYECHNRSDPGNTVLHRDLKPANIFLDAN-----NNVKLGDFGLAKILGHDSSF-----AKTYVGTPYYMSPEQLNHM  185 (265)
T ss_pred             HHHHHHhcCccccCcceecCCCHHHEEEecC-----CCEEEecccccccccCCccc-----ccccccCCCccChhhhcCC
Confidence            9999999     8999999999999999987     89999999999876543211     1134689999999998665


Q ss_pred             CCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccc---cccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHH
Q psy4039         426 PGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNT---DYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA  502 (588)
Q Consensus       426 ~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~---~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~  502 (588)
                      .      .+.++||||||+++|+|++|..||.......   .......+.++..++.++.+++.+||+.+|++||++.++
T Consensus       186 ~------~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~Rp~~~~i  259 (265)
T cd08217         186 S------YDEKSDIWSLGCLIYELCALSPPFTARNQLQLASKIKEGKFRRIPYRYSSELNEVIKSMLNVDPDKRPSTEEL  259 (265)
T ss_pred             C------CCchhHHHHHHHHHHHHHHCCCcccCcCHHHHHHHHhcCCCCCCccccCHHHHHHHHHHccCCcccCCCHHHH
Confidence            4      4467999999999999999999997642111   111223345566788999999999999999999999999


Q ss_pred             HHHHhhhhhcCCccc
Q psy4039         503 ATVCQLYLWAPKHWL  517 (588)
Q Consensus       503 l~~L~~~~~~~h~w~  517 (588)
                      ++         |||+
T Consensus       260 l~---------~~~~  265 (265)
T cd08217         260 LQ---------LPLI  265 (265)
T ss_pred             hh---------CCCC
Confidence            99         9996

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.4e-37  Score=312.58  Aligned_cols=247  Identities=23%  Similarity=0.284  Sum_probs=195.3

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||.||+|.+.  +..+|+|.+......                 ..+.+.+|+.+++.+    +|||
T Consensus         3 ~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~-----------------~~~~~~~e~~~l~~~----~h~~   61 (262)
T cd06613           3 EDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPGD-----------------DFEIIQQEISMLKEC----RHPN   61 (262)
T ss_pred             cceEEEEEecCCCceEEEEeEecCCCCEEEEEEEEcCchh-----------------hHHHHHHHHHHHHhC----CCCC
Confidence            78999999999999999999986  678999998532110                 123456788888887    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++++.+..                            .++++|||+ +++|.+++......+++.++..++.|++.|
T Consensus        62 i~~~~~~~~~~~----------------------------~~~l~~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~  113 (262)
T cd06613          62 IVAYFGSYLRRD----------------------------KLWIVMEYCGGGSLQDIYQVTRGPLSELQIAYVCRETLKG  113 (262)
T ss_pred             hhceEEEEEeCC----------------------------EEEEEEeCCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHH
Confidence            999999887632                            499999999 479999998764589999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||+++|+|+||||+||+++.+     +.+||+|||++........     ......|+..|+|||++.+...   ..
T Consensus       114 l~~lh~~~i~h~dl~p~ni~i~~~-----~~~~l~d~g~~~~~~~~~~-----~~~~~~~~~~y~~Pe~~~~~~~---~~  180 (262)
T cd06613         114 LAYLHETGKIHRDIKGANILLTED-----GDVKLADFGVSAQLTATIA-----KRKSFIGTPYWMAPEVAAVERK---GG  180 (262)
T ss_pred             HHHHHhCCceecCCChhhEEECCC-----CCEEECccccchhhhhhhh-----ccccccCCccccCchhhccccc---CC
Confidence            999999999999999999999987     7899999999876543211     1123568889999999865511   01


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcccccccccc---cc----ccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHH
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE---VN----ALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAAT  504 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~---~~----~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~  504 (588)
                      .+.++|||||||++|||++|..||..........   ..    ........++.++++++.+||..||.+|||+++++.
T Consensus       181 ~~~~~Di~slG~~l~~~~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~  259 (262)
T cd06613         181 YDGKCDIWALGITAIELAELQPPMFDLHPMRALFLISKSNFPPPKLKDKEKWSPVFHDFIKKCLTKDPKKRPTATKLLQ  259 (262)
T ss_pred             cCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhccCCCccccchhhhhHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence            4468999999999999999999997632111110   00    011123356788999999999999999999999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=100.00  E-value=1.1e-37  Score=312.89  Aligned_cols=244  Identities=24%  Similarity=0.342  Sum_probs=195.8

Q ss_pred             cccCCeEEeeeecccCceeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      +.+++|++.+.||+|+||.||++...+..||+|.+....                   ....+.+|+.+++.+    +||
T Consensus         3 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~iK~~~~~~-------------------~~~~~~~e~~~l~~~----~~~   59 (254)
T cd05083           3 LNLQKLTLGEIIGEGEFGAVLQGEYTGQKVAVKNIKCDV-------------------TAQAFLEETAVMTKL----HHK   59 (254)
T ss_pred             ccHHHceeeeeeccCCCCceEecccCCCceEEEeecCcc-------------------hHHHHHHHHHHHHhC----CCC
Confidence            456889999999999999999999889999999984211                   123456788888887    999


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc-CCCCHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC-AQLSMHERVLLFTQLL  350 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~-~~l~~~~~~~i~~ql~  350 (588)
                      ||+++++++...                             ..+++|||+ +++|.+++.... ..+++..+..++.|++
T Consensus        60 ~i~~~~~~~~~~-----------------------------~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~  110 (254)
T cd05083          60 NLVRLLGVILHN-----------------------------GLYIVMELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVA  110 (254)
T ss_pred             CcCeEEEEEcCC-----------------------------CcEEEEECCCCCCHHHHHHhcCcCCCCHHHHHHHHHHHH
Confidence            999999987642                             268999999 579999998653 3589999999999999


Q ss_pred             HHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCcc
Q psy4039         351 EGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFS  430 (588)
Q Consensus       351 ~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~  430 (588)
                      .||.|||+.|++||||||+||+++.+     +.+||+|||+++.......        ....+..|+|||++.+..    
T Consensus       111 ~al~~lH~~~~~H~dl~p~nili~~~-----~~~kl~Dfg~~~~~~~~~~--------~~~~~~~y~~pe~~~~~~----  173 (254)
T cd05083         111 EGMEYLESKKLVHRDLAARNILVSED-----GVAKVSDFGLARVGSMGVD--------NSKLPVKWTAPEALKHKK----  173 (254)
T ss_pred             HHHHHHHhCCeeccccCcceEEEcCC-----CcEEECCCccceeccccCC--------CCCCCceecCHHHhccCC----
Confidence            99999999999999999999999887     7899999999876433211        123456899999986544    


Q ss_pred             CCCCCcCchhhHHHHHHHHhc-CCCCCccccccc---cccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHH
Q psy4039         431 FVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNT---DYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVC  506 (588)
Q Consensus       431 ~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~---~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L  506 (588)
                        .+.++|||||||++|||++ |+.||.......   .......+..+..+|+.+.+++.+||+.+|++||+++++++.+
T Consensus       174 --~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l  251 (254)
T cd05083         174 --FSSKSDVWSYGVLLWEVFSYGRAPYPKMSLKEVKECVEKGYRMEPPEGCPADVYVLMTSCWETEPKKRPSFHKLREKL  251 (254)
T ss_pred             --cCchhhHHHHHHHHHHHHhCCCCCCccCCHHHHHHHHhCCCCCCCCCcCCHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence              4578999999999999997 999997642211   1111222334567889999999999999999999999998865


Q ss_pred             h
Q psy4039         507 Q  507 (588)
Q Consensus       507 ~  507 (588)
                      +
T Consensus       252 ~  252 (254)
T cd05083         252 E  252 (254)
T ss_pred             c
Confidence            4

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=100.00  E-value=1.8e-37  Score=316.89  Aligned_cols=247  Identities=24%  Similarity=0.333  Sum_probs=188.8

Q ss_pred             eecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEEeee
Q psy4039         203 FIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFA  280 (588)
Q Consensus       203 ~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l~~~  280 (588)
                      .||+|+||.||++.+.  ++.||||.+.+.......              ......+|..+++.+ ....||||+.++++
T Consensus         1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~--------------~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~   65 (279)
T cd05633           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQ--------------GETLALNERIMLSLV-STGDCPFIVCMTYA   65 (279)
T ss_pred             CcccCCCeEEEEEEECCCCcEEEEEEEEccccccch--------------HHHHHHHHHHHHHHH-hhCCCCcEeEEEEE
Confidence            4899999999999986  789999998643222111              011122233333222 22479999999988


Q ss_pred             eeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC
Q psy4039         281 FTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMH  359 (588)
Q Consensus       281 ~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yLH~~  359 (588)
                      +....                            ..++||||+ +++|.+++..+. .+++..+..++.|++.||.|||++
T Consensus        66 ~~~~~----------------------------~~~lv~e~~~~~~L~~~i~~~~-~l~~~~~~~i~~qi~~al~~lH~~  116 (279)
T cd05633          66 FHTPD----------------------------KLCFILDLMNGGDLHYHLSQHG-VFSEKEMRFYATEIILGLEHMHNR  116 (279)
T ss_pred             EecCC----------------------------eEEEEEecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHC
Confidence            87532                            489999999 689999998664 799999999999999999999999


Q ss_pred             CceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCCcCch
Q psy4039         360 RTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDA  439 (588)
Q Consensus       360 ~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDV  439 (588)
                      +|+||||||+|||++.+     +.++|+|||++........       ....||+.|+|||.+.....     .+.++||
T Consensus       117 ~ivH~dikp~Nil~~~~-----~~~~l~dfg~~~~~~~~~~-------~~~~~~~~y~aPE~~~~~~~-----~~~~~Di  179 (279)
T cd05633         117 FVVYRDLKPANILLDEH-----GHVRISDLGLACDFSKKKP-------HASVGTHGYMAPEVLQKGTA-----YDSSADW  179 (279)
T ss_pred             CcCCCCCCHHHEEECCC-----CCEEEccCCcceeccccCc-------cCcCCCcCccCHHHhcCCCC-----CCchhhh
Confidence            99999999999999987     7899999999875533211       13468999999999864221     4578999


Q ss_pred             hhHHHHHHHHhcCCCCCcccccccc-----ccccccCCCCCCccHHHHHHHHHhhhhCCCCCC-----CHHHHHHHHhhh
Q psy4039         440 WTAGTVAYEIFGHDNPFYQSARNTD-----YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRP-----SAELAATVCQLY  509 (588)
Q Consensus       440 wS~Gvil~ElltG~~Pf~~~~~~~~-----~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rp-----s~~e~l~~L~~~  509 (588)
                      ||+||++|||++|..||........     ........++..+++++++++.+||..||.+||     +++++++     
T Consensus       180 ~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~~~~-----  254 (279)
T cd05633         180 FSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTVNVELPDSFSPELKSLLEGLLQRDVSKRLGCLGRGAQEVKE-----  254 (279)
T ss_pred             HHHHHHHHHHHhCCCCcCCCCCcCHHHHHHHhhcCCcCCccccCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHHh-----
Confidence            9999999999999999965321110     111223345677899999999999999999999     6999888     


Q ss_pred             hhcCCccccC
Q psy4039         510 LWAPKHWLYG  519 (588)
Q Consensus       510 ~~~~h~w~~~  519 (588)
                          |||++.
T Consensus       255 ----h~~~~~  260 (279)
T cd05633         255 ----HVFFKG  260 (279)
T ss_pred             ----CccccC
Confidence                999975

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>KOG0690|consensus

Probab=100.00  E-value=4.1e-39  Score=317.03  Aligned_cols=262  Identities=23%  Similarity=0.358  Sum_probs=212.1

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccch--hhhHHHHHhhhc
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPL--RLNEDMLMNSVE  266 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~--~~~Ei~il~~l~  266 (588)
                      ..+..++|+..++||+|.||.|..|+-+  ++.||+|++++..                +..+.+.  -..|-.+|+.. 
T Consensus       163 ~kvTm~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKev----------------iiakdEVAHTlTE~RVL~~~-  225 (516)
T KOG0690|consen  163 NKVTMEDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKEV----------------IIAKDEVAHTLTENRVLQNC-  225 (516)
T ss_pred             ceeccchhhHHHHhcCCccceEEEEeecccCceeehhhhhhhh----------------eeehHHhhhhhhHHHHHHhc-
Confidence            4578899999999999999999999987  8999999985422                2222111  12467788887 


Q ss_pred             CCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHH
Q psy4039         267 NLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLL  345 (588)
Q Consensus       267 ~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i  345 (588)
                         +||.+..|-..|+..                            ..++.||||. +|.|.-.|...+ .+++..+..+
T Consensus       226 ---~HPFLt~LKYsFQt~----------------------------drlCFVMeyanGGeLf~HLsrer-~FsE~RtRFY  273 (516)
T KOG0690|consen  226 ---RHPFLTSLKYSFQTQ----------------------------DRLCFVMEYANGGELFFHLSRER-VFSEDRTRFY  273 (516)
T ss_pred             ---cCcHHHHhhhhhccC----------------------------ceEEEEEEEccCceEeeehhhhh-cccchhhhhh
Confidence               999999887776653                            3599999999 578988887654 8999999999


Q ss_pred             HHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcC
Q psy4039         346 FTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALAT  425 (588)
Q Consensus       346 ~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~  425 (588)
                      -..|+.||.|||+++||.||||.+|+|+|.+     +++||+|||+|+.--.     +...+.++||||.|+|||++...
T Consensus       274 GaEIvsAL~YLHs~~ivYRDlKLENLlLDkD-----GHIKitDFGLCKE~I~-----~g~t~kTFCGTPEYLAPEVleDn  343 (516)
T KOG0690|consen  274 GAEIVSALGYLHSRNIVYRDLKLENLLLDKD-----GHIKITDFGLCKEEIK-----YGDTTKTFCGTPEYLAPEVLEDN  343 (516)
T ss_pred             hHHHHHHhhhhhhCCeeeeechhhhheeccC-----CceEeeecccchhccc-----ccceeccccCChhhcCchhhccc
Confidence            9999999999999999999999999999999     9999999999986322     22233479999999999999876


Q ss_pred             CCCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccccccc--ccCCCCCCccHHHHHHHHHhhhhCCCCCCC--HHH
Q psy4039         426 PGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVN--ALPQLNTNVPEVMRRLVAKLLENDPSDRPS--AEL  501 (588)
Q Consensus       426 ~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~~--~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps--~~e  501 (588)
                      .      |+.++|+|.+||++|||+||+.||++......++..  ....+|..++++++.|+..+|.+||.+|..  .++
T Consensus       344 D------YgraVDWWG~GVVMYEMmCGRLPFyn~dh~kLFeLIl~ed~kFPr~ls~eAktLLsGLL~kdP~kRLGgGpdD  417 (516)
T KOG0690|consen  344 D------YGRAVDWWGVGVVMYEMMCGRLPFYNKDHEKLFELILMEDLKFPRTLSPEAKTLLSGLLKKDPKKRLGGGPDD  417 (516)
T ss_pred             c------ccceeehhhhhHHHHHHHhccCcccccchhHHHHHHHhhhccCCccCCHHHHHHHHHHhhcChHhhcCCCchh
Confidence            6      557799999999999999999999987555554432  223578899999999999999999999974  567


Q ss_pred             HHHHHhhhhhcCCccc
Q psy4039         502 AATVCQLYLWAPKHWL  517 (588)
Q Consensus       502 ~l~~L~~~~~~~h~w~  517 (588)
                      +.++.+.-+++.-.|-
T Consensus       418 akEi~~h~FF~~v~W~  433 (516)
T KOG0690|consen  418 AKEIMRHRFFASVDWE  433 (516)
T ss_pred             HHHHHhhhhhccCCHH
Confidence            7777775555555553

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=100.00  E-value=2.3e-37  Score=310.49  Aligned_cols=249  Identities=22%  Similarity=0.348  Sum_probs=200.1

Q ss_pred             CeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCce
Q psy4039         197 DIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNV  274 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNI  274 (588)
                      +|++.+.||+|+||.||++...  ++.||||.+.......               .....+.+|+.+++.+    +||||
T Consensus         1 ~y~~~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~---------------~~~~~~~~e~~~l~~l----~~~~i   61 (256)
T cd08218           1 KYVKVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSP---------------KEREESRKEVAVLSNM----KHPNI   61 (256)
T ss_pred             CceEEEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCCh---------------HHHHHHHHHHHHHHhC----CCCCe
Confidence            5889999999999999999886  7899999985321110               0123456788888887    89999


Q ss_pred             EEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh-cCCCCHHHHHHHHHHHHHH
Q psy4039         275 VVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER-CAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       275 V~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~-~~~l~~~~~~~i~~ql~~g  352 (588)
                      +++++++.+.                            ...++||||+ +++|.+++... ...+++.++..++.|++.|
T Consensus        62 ~~~~~~~~~~----------------------------~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  113 (256)
T cd08218          62 VQYQESFEEN----------------------------GNLYIVMDYCEGGDLYKKINAQRGVLFPEDQILDWFVQICLA  113 (256)
T ss_pred             eeeEeeecCC----------------------------CeEEEEEecCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHH
Confidence            9999988652                            2489999999 67999999764 3368999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||+++++|+||+|+|||++.+     +.++|+|||++.........     .....|++.|+|||++.+..      
T Consensus       114 l~~lh~~~i~h~~l~~~nil~~~~-----~~~~l~d~~~~~~~~~~~~~-----~~~~~~~~~~~~pe~~~~~~------  177 (256)
T cd08218         114 LKHVHDRKILHRDIKSQNIFLTKD-----GTIKLGDFGIARVLNSTVEL-----ARTCIGTPYYLSPEICENRP------  177 (256)
T ss_pred             HHHHHhCCEecCCCCHHHEEEcCC-----CCEEEeeccceeecCcchhh-----hhhccCCccccCHHHhCCCC------
Confidence            999999999999999999999887     78999999999765442211     11345889999999987654      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCccccccccc---cccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhh
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY---EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLY  509 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~---~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~  509 (588)
                      .+.++|||||||++|+|++|..||.........   .....+..+..++.++.++|.+||+.+|++||++.++++     
T Consensus       178 ~~~~~Dv~slG~i~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~vl~-----  252 (256)
T cd08218         178 YNNKSDIWALGCVLYEMCTLKHAFEAGNMKNLVLKIIRGSYPPVSSHYSYDLRNLVSQLFKRNPRDRPSVNSILE-----  252 (256)
T ss_pred             CCCccchhHHHHHHHHHHcCCCCccCCCHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHhhCChhhCcCHHHHhh-----
Confidence            446899999999999999999999754221111   122334456678999999999999999999999999999     


Q ss_pred             hhcCCccc
Q psy4039         510 LWAPKHWL  517 (588)
Q Consensus       510 ~~~~h~w~  517 (588)
                          ||||
T Consensus       253 ----~~~~  256 (256)
T cd08218         253 ----KNFI  256 (256)
T ss_pred             ----CcCC
Confidence                9996

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=100.00  E-value=1.2e-37  Score=317.96  Aligned_cols=251  Identities=22%  Similarity=0.252  Sum_probs=195.8

Q ss_pred             ccCCeEEeeeecccCceeEEEEEEC-------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhc
Q psy4039         194 KVDDIQIGKFIAKGTNAVVYEATFR-------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVE  266 (588)
Q Consensus       194 ~~~~~~~~~~IG~G~fG~Vy~a~~~-------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~  266 (588)
                      ..++|...++||+|+||.||++...       +..+|+|.+....                 ......+.+|+.+++.+ 
T Consensus         3 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~-----------------~~~~~~~~~e~~~l~~l-   64 (280)
T cd05092           3 KRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEAS-----------------ESARQDFQREAELLTVL-   64 (280)
T ss_pred             ChHhceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCC-----------------HHHHHHHHHHHHHHhcC-
Confidence            4478899999999999999999753       5689999874211                 01223567788888887 


Q ss_pred             CCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc-----------
Q psy4039         267 NLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC-----------  334 (588)
Q Consensus       267 ~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~-----------  334 (588)
                         +||||+++++++.+..                            ..+++|||+ +++|.+++....           
T Consensus        65 ---~h~~i~~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~  113 (280)
T cd05092          65 ---QHQHIVRFYGVCTEGR----------------------------PLLMVFEYMRHGDLNRFLRSHGPDAKILAGGED  113 (280)
T ss_pred             ---CCCCCceEEEEEecCC----------------------------ceEEEEecCCCCCHHHHHHhcCcchhhhccccc
Confidence               9999999999887632                            389999999 689999997642           


Q ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCcccccccccccc
Q psy4039         335 ---AQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELG  411 (588)
Q Consensus       335 ---~~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~  411 (588)
                         ..+++..+..++.|++.||+|||++||+||||||+|||++++     +.+||+|||+++.........   ......
T Consensus       114 ~~~~~l~~~~~~~~~~qi~~al~~LH~~~i~H~dlkp~nil~~~~-----~~~kL~dfg~~~~~~~~~~~~---~~~~~~  185 (280)
T cd05092         114 VAPGQLTLGQMLAIASQIASGMVYLASLHFVHRDLATRNCLVGQG-----LVVKIGDFGMSRDIYSTDYYR---VGGRTM  185 (280)
T ss_pred             CCccccCHHHHHHHHHHHHHHHHHHHHCCeecccccHhhEEEcCC-----CCEEECCCCceeEcCCCceee---cCCCcc
Confidence               248999999999999999999999999999999999999977     789999999997653321111   111234


Q ss_pred             CCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCccccccccc---cccccCCCCCCccHHHHHHHHH
Q psy4039         412 GNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTDY---EVNALPQLNTNVPEVMRRLVAK  487 (588)
Q Consensus       412 GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~~---~~~~~~~~~~~~~~~l~~Li~~  487 (588)
                      +++.|+|||++.+..      .+.++|||||||++|||++ |.+||.........   ........+..+|+.+.+++.+
T Consensus       186 ~~~~y~aPE~~~~~~------~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  259 (280)
T cd05092         186 LPIRWMPPESILYRK------FTTESDIWSFGVVLWEIFTYGKQPWYQLSNTEAIECITQGRELERPRTCPPEVYAIMQG  259 (280)
T ss_pred             ccccccCHHHhccCC------cCchhhHHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHcCccCCCCCCCCHHHHHHHHH
Confidence            578899999987654      4578999999999999998 89998653221111   1122234456789999999999


Q ss_pred             hhhhCCCCCCCHHHHHHHHh
Q psy4039         488 LLENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       488 ~L~~dP~~Rps~~e~l~~L~  507 (588)
                      ||+.||.+||++++++..|+
T Consensus       260 cl~~~P~~Rp~~~~l~~~l~  279 (280)
T cd05092         260 CWQREPQQRMVIKDIHSRLQ  279 (280)
T ss_pred             HccCChhhCCCHHHHHHHHh
Confidence            99999999999999988664

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.1e-37  Score=313.49  Aligned_cols=256  Identities=21%  Similarity=0.311  Sum_probs=200.3

Q ss_pred             CeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCce
Q psy4039         197 DIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNV  274 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNI  274 (588)
                      .|++.+.||+|+||.||+|.+.  +..||||.+.......                ....+.+|+.+++.+.. ..||||
T Consensus         2 ~y~~~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~----------------~~~~~~~e~~~l~~l~~-~~~~~v   64 (277)
T cd06917           2 LYQRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDD----------------DVSDIQREVALLSQLRQ-SQPPNI   64 (277)
T ss_pred             hhhhhhheeccCCceEEEEEEcCCCcEEEEEEecCCCCch----------------hHHHHHHHHHHHHHhcc-CCCCCe
Confidence            4777889999999999999985  7899999985321110                12235568888888722 259999


Q ss_pred             EEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         275 VVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       275 V~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      +++++++.+..                            ..+++|||+ +++|.+++...  .+++..+..++.|++.||
T Consensus        65 i~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~~~~~--~l~~~~~~~i~~~i~~~l  114 (277)
T cd06917          65 TKYYGSYLKGP----------------------------RLWIIMEYAEGGSVRTLMKAG--PIAEKYISVIIREVLVAL  114 (277)
T ss_pred             eeEeeeeeeCC----------------------------EEEEEEecCCCCcHHHHHHcc--CCCHHHHHHHHHHHHHHH
Confidence            99999887531                            489999999 67999998764  899999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN  433 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~  433 (588)
                      .|||+.||+||||+|+||+++.+     +.++|+|||++........     ......|+..|+|||.+.....     .
T Consensus       115 ~~lh~~~i~H~dl~p~ni~i~~~-----~~~~l~dfg~~~~~~~~~~-----~~~~~~~~~~y~aPE~~~~~~~-----~  179 (277)
T cd06917         115 KYIHKVGVIHRDIKAANILVTNT-----GNVKLCDFGVAALLNQNSS-----KRSTFVGTPYWMAPEVITEGKY-----Y  179 (277)
T ss_pred             HHHHhCCcccCCcCHHHEEEcCC-----CCEEEccCCceeecCCCcc-----ccccccCCcceeCHHHhccCCc-----c
Confidence            99999999999999999999987     7899999999977654321     1123568999999999864321     3


Q ss_pred             CCcCchhhHHHHHHHHhcCCCCCcccccccccc---ccccCCCCC-CccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhh
Q psy4039         434 YSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE---VNALPQLNT-NVPEVMRRLVAKLLENDPSDRPSAELAATVCQLY  509 (588)
Q Consensus       434 ~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~---~~~~~~~~~-~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~  509 (588)
                      +.++|||||||++|+|++|..||..........   ....+.++. .++.++.+++.+||+.||++||++.+++.     
T Consensus       180 ~~~~Dv~slG~~l~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~il~-----  254 (277)
T cd06917         180 DTKADIWSLGITIYEMATGNPPYSDVDAFRAMMLIPKSKPPRLEDNGYSKLLREFVAACLDEEPKERLSAEELLK-----  254 (277)
T ss_pred             ccchhHHHHHHHHHHHHhCCCCCCCCChhhhhhccccCCCCCCCcccCCHHHHHHHHHHcCCCcccCcCHHHHhh-----
Confidence            468999999999999999999997643222111   112223333 37889999999999999999999999998     


Q ss_pred             hhcCCccccCCCCC
Q psy4039         510 LWAPKHWLYGATPS  523 (588)
Q Consensus       510 ~~~~h~w~~~~~~~  523 (588)
                          |+|++.....
T Consensus       255 ----~~~~~~~~~~  264 (277)
T cd06917         255 ----SKWIKAHSKT  264 (277)
T ss_pred             ----ChHhhccccC
Confidence                9999854443

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=100.00  E-value=3e-37  Score=317.14  Aligned_cols=255  Identities=21%  Similarity=0.238  Sum_probs=197.3

Q ss_pred             CeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCce
Q psy4039         197 DIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNV  274 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNI  274 (588)
                      +|++.+.||+|+||.||+|.+.  ++.||||.+.........            ......+..|+.+++.+    +||||
T Consensus         1 ~y~~~~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~------------~~~~~~~~~e~~~l~~~----~h~~i   64 (298)
T cd07841           1 RYEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAK------------DGINFTALREIKLLQEL----KHPNI   64 (298)
T ss_pred             CceeeeeeeeccccEEEEEEECCCCcEEEEEEEecccccccc------------chhhHHHHHHHHHHhhc----CCCCC
Confidence            4788899999999999999986  789999999643322110            00123345688888887    89999


Q ss_pred             EEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy4039         275 VVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVT  354 (588)
Q Consensus       275 V~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~  354 (588)
                      +++++++.+.                            ...++||||++++|.+++......+++..+..++.||++||.
T Consensus        65 ~~~~~~~~~~----------------------------~~~~lv~e~~~~~L~~~i~~~~~~~~~~~~~~~~~qi~~al~  116 (298)
T cd07841          65 IGLLDVFGHK----------------------------SNINLVFEFMETDLEKVIKDKSIVLTPADIKSYMLMTLRGLE  116 (298)
T ss_pred             hhhhheeecC----------------------------CEEEEEEcccCCCHHHHHhccCCCCCHHHHHHHHHHHHHHHH
Confidence            9999998762                            148999999988999999876446999999999999999999


Q ss_pred             HHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCC
Q psy4039         355 HLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY  434 (588)
Q Consensus       355 yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~  434 (588)
                      |||++||+||||||+||+++.+     +.++|+|||+++........     .....+++.|+|||++.+...     .+
T Consensus       117 ~lH~~~i~H~dl~p~nill~~~-----~~~~l~dfg~~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~-----~~  181 (298)
T cd07841         117 YLHSNWILHRDLKPNNLLIASD-----GVLKLADFGLARSFGSPNRK-----MTHQVVTRWYRAPELLFGARH-----YG  181 (298)
T ss_pred             HHHhCCeeecCCChhhEEEcCC-----CCEEEccceeeeeccCCCcc-----ccccccceeeeCHHHHhCCCC-----CC
Confidence            9999999999999999999987     78999999999876542211     112346889999999854321     35


Q ss_pred             CcCchhhHHHHHHHHhcCCCCCccccccccc------------------------c-ccc-----cCCCCCCccHHHHHH
Q psy4039         435 SKSDAWTAGTVAYEIFGHDNPFYQSARNTDY------------------------E-VNA-----LPQLNTNVPEVMRRL  484 (588)
Q Consensus       435 ~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~------------------------~-~~~-----~~~~~~~~~~~l~~L  484 (588)
                      .++|||||||++|||++|.+||.+.......                        . ...     .......++.++.++
T Consensus       182 ~~~Dv~slG~il~e~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  261 (298)
T cd07841         182 VGVDMWSVGCIFAELLLRVPFLPGDSDIDQLGKIFEALGTPTEENWPGVTSLPDYVEFKPFPPTPLKQIFPAASDDALDL  261 (298)
T ss_pred             cHHHHHHHHHHHHHHHcCCccccCCccHHHHHHHHHHcCCCchhhhhhcccccccccccccCCcchhhhcccccHHHHHH
Confidence            6799999999999999998877542211000                        0 000     001123457889999


Q ss_pred             HHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccC
Q psy4039         485 VAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       485 i~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~  519 (588)
                      |.+||+.||++|||+.+++.         |+|++.
T Consensus       262 i~~~l~~~P~~R~s~~e~l~---------~~~~~~  287 (298)
T cd07841         262 LQRLLTLNPNKRITARQALE---------HPYFSN  287 (298)
T ss_pred             HHHHhcCCcccCcCHHHHhh---------CccccC
Confidence            99999999999999999999         999984

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=100.00  E-value=2e-37  Score=318.03  Aligned_cols=254  Identities=22%  Similarity=0.275  Sum_probs=196.3

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      +++|++.+.||+|++|.||+|.+.  ++.||||.+......               ......+.+|+.+++.+    +||
T Consensus         1 ~~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~---------------~~~~~~~~~e~~~l~~l----~h~   61 (294)
T PLN00009          1 MDQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQED---------------EGVPSTAIREISLLKEM----QHG   61 (294)
T ss_pred             CCceEEEEEecCCCCEEEEEEEecCCCcEEEEEehhhcccc---------------ccchHHHHHHHHHHHhc----cCC
Confidence            378999999999999999999986  789999998432110               01223456788999887    899


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhc-CCCCHHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERC-AQLSMHERVLLFTQLLE  351 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~-~~l~~~~~~~i~~ql~~  351 (588)
                      ||+++++++.+..                            ..++||||++++|.+++.... ..+++..+..++.||+.
T Consensus        62 ~i~~~~~~~~~~~----------------------------~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~  113 (294)
T PLN00009         62 NIVRLQDVVHSEK----------------------------RLYLVFEYLDLDLKKHMDSSPDFAKNPRLIKTYLYQILR  113 (294)
T ss_pred             CEeeEEEEEecCC----------------------------eEEEEEecccccHHHHHHhCCCCCcCHHHHHHHHHHHHH
Confidence            9999999987632                            499999999889998887543 24688899999999999


Q ss_pred             HHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccC
Q psy4039         352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF  431 (588)
Q Consensus       352 gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~  431 (588)
                      ||+|||+++|+||||||+||+++.+.    ..+||+|||++........     ......|++.|+|||++.+...    
T Consensus       114 aL~~LH~~~i~H~dl~p~nill~~~~----~~~kl~dfg~~~~~~~~~~-----~~~~~~~~~~y~~PE~~~~~~~----  180 (294)
T PLN00009        114 GIAYCHSHRVLHRDLKPQNLLIDRRT----NALKLADFGLARAFGIPVR-----TFTHEVVTLWYRAPEILLGSRH----  180 (294)
T ss_pred             HHHHHHhCCeeCCCCCcceEEEECCC----CEEEEcccccccccCCCcc-----ccccCceeecccCHHHHhCCCC----
Confidence            99999999999999999999998542    5789999999976543211     1113457899999999865321    


Q ss_pred             CCCCcCchhhHHHHHHHHhcCCCCCccccccccccc-----------------------cccC--------CCCCCccHH
Q psy4039         432 VNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV-----------------------NALP--------QLNTNVPEV  480 (588)
Q Consensus       432 ~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~-----------------------~~~~--------~~~~~~~~~  480 (588)
                       .+.++||||+||++|+|++|.+||...........                       ...+        .....++++
T Consensus       181 -~~~~~Dv~slG~i~~~l~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (294)
T PLN00009        181 -YSTPVDIWSVGCIFAEMVNQKPLFPGDSEIDELFKIFRILGTPNEETWPGVTSLPDYKSAFPKWPPKDLATVVPTLEPA  259 (294)
T ss_pred             -CCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhccccccchhhhhhcccCCCCCHHHhCcCCChH
Confidence             45689999999999999999999965311100000                       0000        012356788


Q ss_pred             HHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCcccc
Q psy4039         481 MRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLY  518 (588)
Q Consensus       481 l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~  518 (588)
                      +.+++.+||+.||++||+++++++         |||+.
T Consensus       260 ~~~~i~~~l~~~P~~Rps~~~~l~---------~~~~~  288 (294)
T PLN00009        260 GVDLLSKMLRLDPSKRITARAALE---------HEYFK  288 (294)
T ss_pred             HHHHHHHHccCChhhCcCHHHHhc---------CchHh
Confidence            999999999999999999999999         99997

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=2.8e-37  Score=315.25  Aligned_cols=252  Identities=22%  Similarity=0.264  Sum_probs=194.2

Q ss_pred             CCeEEeeeecccCceeEEEEEEC------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCC
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLP  269 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~  269 (588)
                      .+|++.+.||+|+||.||+|.+.      +..||||.+....     ..            ..+.+.+|+.+++.+    
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~-----~~------------~~~~~~~e~~~l~~l----   62 (284)
T cd05081           4 RHLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHST-----AE------------HLRDFEREIEILKSL----   62 (284)
T ss_pred             ccceeeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCC-----HH------------HHHHHHHHHHHHHhC----
Confidence            67899999999999999999853      7789999984311     00            123456788999887    


Q ss_pred             CCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHH
Q psy4039         270 PHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQ  348 (588)
Q Consensus       270 ~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~q  348 (588)
                      +||||+++++++....                          ...+++||||+ +++|.+++......+++..+..++.|
T Consensus        63 ~h~~iv~~~~~~~~~~--------------------------~~~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~  116 (284)
T cd05081          63 QHDNIVKYKGVCYSAG--------------------------RRNLRLVMEYLPYGSLRDYLQKHRERLDHRKLLLYASQ  116 (284)
T ss_pred             CCCCeeEEEEEEccCC--------------------------CCceEEEEEecCCCCHHHHHHhcCcCCCHHHHHHHHHH
Confidence            9999999999875421                          12389999999 68999999876557999999999999


Q ss_pred             HHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCC
Q psy4039         349 LLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGL  428 (588)
Q Consensus       349 l~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~  428 (588)
                      ++.||.|||++||+||||||+||+++.+     +.+||+|||+++..........  ......++..|+|||++.+..  
T Consensus       117 l~~aL~~LH~~~i~H~dlkp~nili~~~-----~~~~l~dfg~~~~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~--  187 (284)
T cd05081         117 ICKGMEYLGSKRYVHRDLATRNILVESE-----NRVKIGDFGLTKVLPQDKEYYK--VREPGESPIFWYAPESLTESK--  187 (284)
T ss_pred             HHHHHHHHHHCCceeccCCHhhEEECCC-----CeEEECCCcccccccCCCccee--ecCCCCCceEeeCHHHhccCC--
Confidence            9999999999999999999999999987     7899999999987644221100  001123455699999987654  


Q ss_pred             ccCCCCCcCchhhHHHHHHHHhcCCCCCccccccc-------c------------ccccccCCCCCCccHHHHHHHHHhh
Q psy4039         429 FSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNT-------D------------YEVNALPQLNTNVPEVMRRLVAKLL  489 (588)
Q Consensus       429 ~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~-------~------------~~~~~~~~~~~~~~~~l~~Li~~~L  489 (588)
                          ++.++|||||||++|||++|..|+.......       .            .......+.+..++.++.+++.+||
T Consensus       188 ----~~~~~Di~slG~~l~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl  263 (284)
T cd05081         188 ----FSVASDVWSFGVVLYELFTYSDKSCSPPAEFMRMMGNDKQGQMIVYHLIELLKNNGRLPAPPGCPAEIYAIMKECW  263 (284)
T ss_pred             ----cChHHHHHHHHHHHHHHhhcCCcCCCcchhhhhhcccccccccchHHHHHHHhcCCcCCCCCCCCHHHHHHHHHHc
Confidence                4578999999999999999877754321100       0            0011122345678899999999999


Q ss_pred             hhCCCCCCCHHHHHHHHh
Q psy4039         490 ENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       490 ~~dP~~Rps~~e~l~~L~  507 (588)
                      ..+|++|||+.++++.|+
T Consensus       264 ~~~p~~Rpt~~ei~~~l~  281 (284)
T cd05081         264 NNDPSQRPSFSELALQVE  281 (284)
T ss_pred             cCChhhCCCHHHHHHHHH
Confidence            999999999999998776

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=100.00  E-value=1.5e-37  Score=318.62  Aligned_cols=252  Identities=24%  Similarity=0.278  Sum_probs=195.3

Q ss_pred             CeEEeeeecccCceeEEEEEEC-------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCC
Q psy4039         197 DIQIGKFIAKGTNAVVYEATFR-------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLP  269 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~~~-------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~  269 (588)
                      +|++.+.||+|+||.||+|...       ...+|+|.+......                .....+.+|+.+++.+    
T Consensus         1 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~----------------~~~~~~~~E~~~l~~l----   60 (290)
T cd05045           1 NLVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASS----------------SELRDLLSEFNLLKQV----   60 (290)
T ss_pred             CccccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCCH----------------HHHHHHHHHHHHHhhC----
Confidence            4778899999999999999875       256999987432110                0123466788999887    


Q ss_pred             CCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc--------------
Q psy4039         270 PHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC--------------  334 (588)
Q Consensus       270 ~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~--------------  334 (588)
                      +||||+++++.+....                            ..+++|||+ +++|.+++....              
T Consensus        61 ~h~~iv~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~  112 (290)
T cd05045          61 NHPHVIKLYGACSQDG----------------------------PLLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRN  112 (290)
T ss_pred             CCCCEeeEEEEEecCC----------------------------CcEEEEEecCCCCHHHHHHhcCCccccccccccccc
Confidence            8999999999887632                            378999999 589999987521              


Q ss_pred             ---------CCCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCcccccc
Q psy4039         335 ---------AQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSS  405 (588)
Q Consensus       335 ---------~~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~  405 (588)
                               ..+++..++.++.|++.||.|||+++|+||||||+|||++++     +.+||+|||+++.........   
T Consensus       113 ~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~ivH~dikp~nill~~~-----~~~kl~dfg~~~~~~~~~~~~---  184 (290)
T cd05045         113 SSYLDNPDERALTMGDLISFAWQISRGMQYLAEMKLVHRDLAARNVLVAEG-----RKMKISDFGLSRDVYEEDSYV---  184 (290)
T ss_pred             cccccCccccccCHHHHHHHHHHHHHHHHHHHHCCeehhhhhhheEEEcCC-----CcEEeccccccccccCccchh---
Confidence                     247899999999999999999999999999999999999887     789999999997653321110   


Q ss_pred             ccccccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCccccccccc---cccccCCCCCCccHHH
Q psy4039         406 ADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTDY---EVNALPQLNTNVPEVM  481 (588)
Q Consensus       406 ~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~~---~~~~~~~~~~~~~~~l  481 (588)
                      ......++..|+|||++.+..      .+.++||||||+++|||++ |..||.+.......   ........+..++.++
T Consensus       185 ~~~~~~~~~~y~apE~~~~~~------~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (290)
T cd05045         185 KRSKGRIPVKWMAIESLFDHI------YTTQSDVWSFGVLLWEIVTLGGNPYPGIAPERLFNLLKTGYRMERPENCSEEM  258 (290)
T ss_pred             cccCCCCCccccCHHHHccCC------cchHhHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHhCCCCCCCCCCCCHHH
Confidence            011334677899999986544      4578999999999999998 99999764322111   1112234456788999


Q ss_pred             HHHHHHhhhhCCCCCCCHHHHHHHHhhhh
Q psy4039         482 RRLVAKLLENDPSDRPSAELAATVCQLYL  510 (588)
Q Consensus       482 ~~Li~~~L~~dP~~Rps~~e~l~~L~~~~  510 (588)
                      .+++.+||+.||++||+++++++.|+.++
T Consensus       259 ~~~i~~cl~~~P~~Rp~~~~i~~~l~~~~  287 (290)
T cd05045         259 YNLMLTCWKQEPDKRPTFADISKELEKMM  287 (290)
T ss_pred             HHHHHHHccCCcccCCCHHHHHHHHHHHH
Confidence            99999999999999999999999887654

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=3.1e-37  Score=312.68  Aligned_cols=260  Identities=24%  Similarity=0.296  Sum_probs=197.6

Q ss_pred             CeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCce
Q psy4039         197 DIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNV  274 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNI  274 (588)
                      +|.+.+.||.|+||.||+|...  ++.||||.+..........   +....    ...+.+.+|+.+++.+    +||||
T Consensus         2 ~~~~~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~---~~~~~----~~~~~~~~e~~~l~~l----~h~~i   70 (272)
T cd06629           2 KWVKGELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRH---DSRQK----DMVKALRSEIETLKDL----DHLNI   70 (272)
T ss_pred             ceeecceecccCceEEEEEeecCCCceeeeeeeechhhhhccc---chHHH----HHHHHHHHHHHHHHhc----CCCCc
Confidence            4778899999999999999875  7899999985321111000   00000    0123456688888887    89999


Q ss_pred             EEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         275 VVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       275 V~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      +++++++.+..                            ..++||||+ +++|.+++.... .+++..+..++.|++.||
T Consensus        71 ~~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~-~l~~~~~~~~~~qi~~~l  121 (272)
T cd06629          71 VQYLGFETTEE----------------------------YLSIFLEYVPGGSIGSCLRTYG-RFEEQLVRFFTEQVLEGL  121 (272)
T ss_pred             ceEEEEeccCC----------------------------ceEEEEecCCCCcHHHHHhhcc-CCCHHHHHHHHHHHHHHH
Confidence            99999876521                            489999999 689999998764 799999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN  433 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~  433 (588)
                      .|||+++++||||||+||+++.+     +.++|+|||+++........   .......|+..|+|||++......    .
T Consensus       122 ~~lH~~~i~H~dl~~~nil~~~~-----~~~~l~d~~~~~~~~~~~~~---~~~~~~~~~~~y~~PE~~~~~~~~----~  189 (272)
T cd06629         122 AYLHSKGILHRDLKADNLLVDAD-----GICKISDFGISKKSDDIYDN---DQNMSMQGSVFWMAPEVIHSYSQG----Y  189 (272)
T ss_pred             HHHhhCCeeecCCChhhEEEcCC-----CeEEEeeccccccccccccc---cccccccCCccccCHHHhccccCC----C
Confidence            99999999999999999999987     79999999999765432111   111245689999999998764321    3


Q ss_pred             CCcCchhhHHHHHHHHhcCCCCCccccccccc----ccccc----CCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHH
Q psy4039         434 YSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY----EVNAL----PQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATV  505 (588)
Q Consensus       434 ~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~----~~~~~----~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~  505 (588)
                      +.++||||||+++||+++|..||.........    .....    ......++.++++++.+||+.||++|||++++++ 
T Consensus       190 ~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~-  268 (272)
T cd06629         190 SAKVDIWSLGCVVLEMFAGRRPWSDEEAIAAMFKLGNKRSAPPIPPDVSMNLSPVALDFLNACFTINPDNRPTARELLQ-  268 (272)
T ss_pred             CccchhHHHHHHHHHHHhCCCCCcCcchHHHHHHhhccccCCcCCccccccCCHHHHHHHHHHhcCChhhCCCHHHHhh-
Confidence            57899999999999999999999653211100    01111    1223456899999999999999999999999999 


Q ss_pred             HhhhhhcCCccc
Q psy4039         506 CQLYLWAPKHWL  517 (588)
Q Consensus       506 L~~~~~~~h~w~  517 (588)
                              |||+
T Consensus       269 --------~~~~  272 (272)
T cd06629         269 --------HPFI  272 (272)
T ss_pred             --------CCCC
Confidence                    9996

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>PHA03210 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=6.2e-38  Score=346.35  Aligned_cols=269  Identities=18%  Similarity=0.272  Sum_probs=191.6

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC---CeeEEEEEEecCCCCcchHHHHHHHhhhh--cccccchhhhHHHHHhhhcCCC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR---GVEYALKMMFNYSAASNSHAILKAMSKEL--LPLRKPLRLNEDMLMNSVENLP  269 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~---g~~vAVK~i~~~~~~~~~~~~~k~~~~e~--~~~~~~~~~~Ei~il~~l~~l~  269 (588)
                      .++|++.+.||+|+||+||+|.++   +..+++|.+.......  ....+...+..  .......+.+|+.+|+.+    
T Consensus       147 ~~~Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~l----  220 (501)
T PHA03210        147 LAHFRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGK--PKCERLIAKRVKAGSRAAIQLENEILALGRL----  220 (501)
T ss_pred             hhccEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccc--hhhhhhHhHHhhcchHHHHHHHHHHHHHHhC----
Confidence            478999999999999999999875   3334444331110000  00001111111  111234567899999998    


Q ss_pred             CCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhc----CCCCHHHHHHH
Q psy4039         270 PHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERC----AQLSMHERVLL  345 (588)
Q Consensus       270 ~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~----~~l~~~~~~~i  345 (588)
                      +|||||++++++.+..                            ..|++|+++.++|.+++....    ......++..|
T Consensus       221 ~HpnIv~l~~~~~~~~----------------------------~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~~i  272 (501)
T PHA03210        221 NHENILKIEEILRSEA----------------------------NTYMITQKYDFDLYSFMYDEAFDWKDRPLLKQTRAI  272 (501)
T ss_pred             CCCCcCcEeEEEEECC----------------------------eeEEEEeccccCHHHHHhhccccccccccHHHHHHH
Confidence            9999999999988732                            389999999999999886531    13446678899


Q ss_pred             HHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcC
Q psy4039         346 FTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALAT  425 (588)
Q Consensus       346 ~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~  425 (588)
                      +.||+.||.|||++|||||||||+|||++.+     +.+||+|||+++........    ......||+.|+|||++.+.
T Consensus       273 ~~ql~~aL~yLH~~gIiHrDLKP~NILl~~~-----~~vkL~DFGla~~~~~~~~~----~~~~~~gt~~y~aPE~~~~~  343 (501)
T PHA03210        273 MKQLLCAVEYIHDKKLIHRDIKLENIFLNCD-----GKIVLGDFGTAMPFEKEREA----FDYGWVGTVATNSPEILAGD  343 (501)
T ss_pred             HHHHHHHHHHHHhCCeecCCCCHHHEEECCC-----CCEEEEeCCCceecCccccc----ccccccCCcCCCCchhhcCC
Confidence            9999999999999999999999999999987     78999999999876542211    11245799999999999765


Q ss_pred             CCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccc-cc--c---------ccccccC----------------CC----
Q psy4039         426 PGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSAR-NT--D---------YEVNALP----------------QL----  473 (588)
Q Consensus       426 ~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~-~~--~---------~~~~~~~----------------~~----  473 (588)
                      .      ++.++|||||||++|||++|..|+..... ..  .         ......+                ..    
T Consensus       344 ~------~~~~~DiwSlGvil~ell~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~  417 (501)
T PHA03210        344 G------YCEITDIWSCGLILLDMLSHDFCPIGDGGGKPGKQLLKIIDSLSVCDEEFPDPPCKLFDYIDSAEIDHAGHSV  417 (501)
T ss_pred             C------CCcHHHHHHHHHHHHHHHHCCCCCccCCCCCHHHHHHHHHHhcccChhhcCCcHHHHHHHhhhhhcccCccch
Confidence            4      45789999999999999998754432110 00  0         0000000                00    


Q ss_pred             -----CCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccCCC
Q psy4039         474 -----NTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGAT  521 (588)
Q Consensus       474 -----~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~~  521 (588)
                           ...++.++.+++.+||+.||.+|||+.|+++         ||||....
T Consensus       418 ~~~~~~~~~~~~~~~li~kmL~~DP~~Rpsa~elL~---------hp~f~~~~  461 (501)
T PHA03210        418 PPLIRNLGLPADFEYPLVKMLTFDWHLRPGAAELLA---------LPLFSAEE  461 (501)
T ss_pred             hhHHHhcCCChHHHHHHHHHhccCcccCcCHHHHhh---------ChhhhcCC
Confidence                 1135667888999999999999999999999         99997543

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=100.00  E-value=2.8e-37  Score=314.19  Aligned_cols=249  Identities=26%  Similarity=0.286  Sum_probs=191.6

Q ss_pred             eEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceE
Q psy4039         198 IQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVV  275 (588)
Q Consensus       198 ~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV  275 (588)
                      |++.+.||+|+||.||+|.+.  +..||+|.+.......                ......+|+.++.++   ..||||+
T Consensus         1 y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~----------------~~~~~~~e~~~l~~l---~~h~~i~   61 (282)
T cd07831           1 YKILGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSL----------------EQVNNLREIQALRRL---SPHPNIL   61 (282)
T ss_pred             CceEeeccccccceEEEEEEcCCCcEEEEEEehhccCCc----------------hhhhHHHHHHHHhhc---CCCCCcc
Confidence            577889999999999999986  7899999985321110                111223577777666   4699999


Q ss_pred             EEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q psy4039         276 VMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTH  355 (588)
Q Consensus       276 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~y  355 (588)
                      ++++++.+..                          +..+++||||++++|.+++......+++.++..++.|++.||.|
T Consensus        62 ~~~~~~~~~~--------------------------~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~  115 (282)
T cd07831          62 RLIEVLFDRK--------------------------TGRLALVFELMDMNLYELIKGRKRPLPEKRVKSYMYQLLKSLDH  115 (282)
T ss_pred             ceEEEEecCC--------------------------CCcEEEEEecCCccHHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Confidence            9999987631                          12489999999999999998765579999999999999999999


Q ss_pred             HHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCC
Q psy4039         356 LNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS  435 (588)
Q Consensus       356 LH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~  435 (588)
                      ||+.+|+||||||+||+++.      +.+||+|||+++........      ....+|+.|+|||++.....     .+.
T Consensus       116 LH~~~i~H~dl~p~ni~l~~------~~~kl~dfg~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~-----~~~  178 (282)
T cd07831         116 MHRNGIFHRDIKPENILIKD------DILKLADFGSCRGIYSKPPY------TEYISTRWYRAPECLLTDGY-----YGP  178 (282)
T ss_pred             HHHCCceecccCHHHEEEcC------CCeEEEecccccccccCCCc------CCCCCCcccCChhHhhcCCC-----CCc
Confidence            99999999999999999986      47999999999765432111      13457899999998754321     346


Q ss_pred             cCchhhHHHHHHHHhcCCCCCccccccccc-----------------------ccccc--------CCCCCCccHHHHHH
Q psy4039         436 KSDAWTAGTVAYEIFGHDNPFYQSARNTDY-----------------------EVNAL--------PQLNTNVPEVMRRL  484 (588)
Q Consensus       436 ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~-----------------------~~~~~--------~~~~~~~~~~l~~L  484 (588)
                      ++||||+||++|||++|..||.+......+                       .....        ......++.++.++
T Consensus       179 ~~Di~slGv~l~el~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  258 (282)
T cd07831         179 KMDIWAVGCVFFEILSLFPLFPGTNELDQIAKIHDVLGTPDAEVLKKFRKSRHMNYNFPSKKGTGLRKLLPNASAEGLDL  258 (282)
T ss_pred             chhHHHHHHHHHHHHcCCcCCCCCCHHHHHHHHHHHcCCCCHHHHHhhcccccccccCcccccccHHHHcccccHHHHHH
Confidence            899999999999999999999653110000                       00000        01123568899999


Q ss_pred             HHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccc
Q psy4039         485 VAKLLENDPSDRPSAELAATVCQLYLWAPKHWL  517 (588)
Q Consensus       485 i~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~  517 (588)
                      |.+||+.||++||+++++++         |||+
T Consensus       259 i~~~l~~~P~~R~~~~~~l~---------~~~~  282 (282)
T cd07831         259 LKKLLAYDPDERITAKQALR---------HPYF  282 (282)
T ss_pred             HHHHhccCcccccCHHHHhh---------CCCC
Confidence            99999999999999999999         9996

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=100.00  E-value=8.8e-38  Score=314.46  Aligned_cols=249  Identities=20%  Similarity=0.291  Sum_probs=199.5

Q ss_pred             ccCCeEEeeeecccCceeEEEEEEC-CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         194 KVDDIQIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       194 ~~~~~~~~~~IG~G~fG~Vy~a~~~-g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      ...+|++.+.||.|+||.||+|.+. +..+|+|.+.....                 .....+.+|+.+++.+    +||
T Consensus         4 ~~~~y~~~~~ig~g~~~~vy~~~~~~~~~~~~k~~~~~~~-----------------~~~~~~~~e~~~l~~l----~~~   62 (261)
T cd05148           4 PREEFTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSDDL-----------------LKQQDFQKEVQALKRL----RHK   62 (261)
T ss_pred             cHHHHHHhhhhccCCCccEEEeEecCCCcEEEEeccccch-----------------hhHHHHHHHHHHHhcC----CCc
Confidence            3467999999999999999999987 68899999853211                 0123456688888887    899


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh-cCCCCHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER-CAQLSMHERVLLFTQLL  350 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~-~~~l~~~~~~~i~~ql~  350 (588)
                      ||+++++++.+..                            ..+++|||+ +++|.+++... +..+++.++..++.|++
T Consensus        63 ~i~~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~  114 (261)
T cd05148          63 HLISLFAVCSVGE----------------------------PVYIITELMEKGSLLAFLRSPEGQVLPVASLIDMACQVA  114 (261)
T ss_pred             chhheeeeEecCC----------------------------CeEEEEeecccCCHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence            9999999887632                            389999999 57999999864 34689999999999999


Q ss_pred             HHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCcc
Q psy4039         351 EGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFS  430 (588)
Q Consensus       351 ~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~  430 (588)
                      .||.|||++||+||||||+||+++.+     +.+||+|||++..........     ....++..|+|||++....    
T Consensus       115 ~al~~lH~~~i~h~dl~~~nilv~~~-----~~~kl~d~g~~~~~~~~~~~~-----~~~~~~~~~~~PE~~~~~~----  180 (261)
T cd05148         115 EGMAYLEEQNSIHRDLAARNILVGED-----LVCKVADFGLARLIKEDVYLS-----SDKKIPYKWTAPEAASHGT----  180 (261)
T ss_pred             HHHHHHHHCCeeccccCcceEEEcCC-----ceEEEccccchhhcCCccccc-----cCCCCceEecCHHHHccCC----
Confidence            99999999999999999999999987     789999999997764422111     1234677899999987654    


Q ss_pred             CCCCCcCchhhHHHHHHHHhc-CCCCCccccccccc---cccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHH
Q psy4039         431 FVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTDY---EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVC  506 (588)
Q Consensus       431 ~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~~---~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L  506 (588)
                        .+.++||||||+++|+|++ |+.||........+   .....++.+..+++.+.+++.+||+.||.+|||+.++++.|
T Consensus       181 --~~~~~DiwslG~~l~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~l~~~L  258 (261)
T cd05148         181 --FSTKSDVWSFGILLYEMFTYGQVPYPGMNNHEVYDQITAGYRMPCPAKCPQEIYKIMLECWAAEPEDRPSFKALREEL  258 (261)
T ss_pred             --CCchhhHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHHHhCCcCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHH
Confidence              4468999999999999998 89999664322111   12223345678899999999999999999999999999877


Q ss_pred             h
Q psy4039         507 Q  507 (588)
Q Consensus       507 ~  507 (588)
                      +
T Consensus       259 ~  259 (261)
T cd05148         259 D  259 (261)
T ss_pred             h
Confidence            6

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.3e-37  Score=321.19  Aligned_cols=258  Identities=24%  Similarity=0.313  Sum_probs=200.5

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||.||+|...  ++.||||.+........              ...+.+.+|+.+++.+    +|||
T Consensus         1 ~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~--------------~~~~~~~~e~~~l~~l----~~~~   62 (316)
T cd05574           1 KHFKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKR--------------NKVKRVLTEQEILATL----DHPF   62 (316)
T ss_pred             CceEEeeeecCCccEEEEEEEEcCCCcEEEEEEEeccccchH--------------HHHHHHHHHHHHHHhC----CCCC
Confidence            47899999999999999999986  68999999854321110              0123456788888887    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh-cCCCCHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER-CAQLSMHERVLLFTQLLE  351 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~-~~~l~~~~~~~i~~ql~~  351 (588)
                      |+++++.+.+.                            ...+++|||+ +++|.+++... ...+++..+..++.|+++
T Consensus        63 i~~~~~~~~~~----------------------------~~~~lv~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~qi~~  114 (316)
T cd05574          63 LPTLYASFQTE----------------------------TYLCLVMDYCPGGELFRLLQRQPGKCLSEEVARFYAAEVLL  114 (316)
T ss_pred             chhheeeeecC----------------------------CEEEEEEEecCCCCHHHHHHhCCCCccCHHHHHHHHHHHHH
Confidence            99999988653                            2489999999 57999999764 347999999999999999


Q ss_pred             HHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccc------------------------ccccc
Q psy4039         352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQ------------------------YSSAD  407 (588)
Q Consensus       352 gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~------------------------~~~~~  407 (588)
                      ||.|||+.|++||||||+||+++.+     +.++|+|||++..........                        .....
T Consensus       115 ~l~~lH~~~i~H~dlkp~Nili~~~-----~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (316)
T cd05574         115 ALEYLHLLGIVYRDLKPENILLHES-----GHIMLSDFDLSKQSDVEPPPVSKALRKGSRRSSVNSIPSETFSEEPSFRS  189 (316)
T ss_pred             HHHHHHHCCeeccCCChHHeEEcCC-----CCEEEeecchhhcccccccccccccccccccccccccchhhhcccccCCC
Confidence            9999999999999999999999987     789999999987653321100                        00111


Q ss_pred             ccccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccccc--cccCCC--CCCccHHHHH
Q psy4039         408 IELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV--NALPQL--NTNVPEVMRR  483 (588)
Q Consensus       408 ~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~--~~~~~~--~~~~~~~l~~  483 (588)
                      ....||..|+|||++.+..      .+.++|||||||++|+|++|..||.+......+..  ......  ...+++++++
T Consensus       190 ~~~~g~~~y~aPE~~~~~~------~~~~~Di~slG~ll~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (316)
T cd05574         190 NSFVGTEEYIAPEVISGDG------HGSAVDWWTLGILLYEMLYGTTPFKGSNRDETFSNILKKEVTFPGSPPVSSSARD  263 (316)
T ss_pred             CCCcCccCCcCHHHHcCCC------CCchHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHhcCCccCCCccccCHHHHH
Confidence            2356899999999997654      45789999999999999999999976432221111  111112  2236899999


Q ss_pred             HHHHhhhhCCCCCCC----HHHHHHHHhhhhhcCCccccC
Q psy4039         484 LVAKLLENDPSDRPS----AELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       484 Li~~~L~~dP~~Rps----~~e~l~~L~~~~~~~h~w~~~  519 (588)
                      ++.+||+.||++|||    ++++++         |||++.
T Consensus       264 li~~~l~~~p~~R~s~~~~~~~ll~---------~~~~~~  294 (316)
T cd05574         264 LIRKLLVKDPSKRLGSKRGAAEIKQ---------HPFFRG  294 (316)
T ss_pred             HHHHHccCCHhHCCCchhhHHHHHc---------Cchhhc
Confidence            999999999999999    999888         999973

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=100.00  E-value=2.3e-37  Score=319.90  Aligned_cols=260  Identities=23%  Similarity=0.335  Sum_probs=197.8

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||.||++.+.  ++.||||.+.......              ......+.+|+.+++.+    +|||
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~--------------~~~~~~~~~e~~~l~~~----~~~~   62 (305)
T cd05609           1 EDFETIKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLIL--------------RNQIQQVFVERDILTFA----ENPF   62 (305)
T ss_pred             CCceEeeEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhh--------------HHHHHHHHHHHHHHHhC----CCCC
Confidence            47899999999999999999987  6899999985321100              00123455788888876    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++.+...                            ..++++|||+ +++|.+++...+ .+++..+..++.|++.|
T Consensus        63 i~~~~~~~~~~----------------------------~~~~lv~e~~~g~~L~~~l~~~~-~~~~~~~~~~~~~i~~~  113 (305)
T cd05609          63 VVSMFCSFETK----------------------------RHLCMVMEYVEGGDCATLLKNIG-ALPVDMARMYFAETVLA  113 (305)
T ss_pred             eeeeEEEEecC----------------------------CEEEEEEecCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence            99999988753                            1489999999 579999997764 79999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccc----------cccccccccCCccccchhHH
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQ----------YSSADIELGGNVALMAPEVA  422 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~----------~~~~~~~~~GT~~Y~APE~l  422 (588)
                      |.|||+++|+||||||+||+++.+     +.++|+|||+++.........          .........|+..|+|||.+
T Consensus       114 l~~lH~~~i~H~dl~p~NIll~~~-----~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  188 (305)
T cd05609         114 LEYLHNYGIVHRDLKPDNLLITSM-----GHIKLTDFGLSKIGLMSLTTNLYEGHIEKDTREFLDKQVCGTPEYIAPEVI  188 (305)
T ss_pred             HHHHHHCCccccCCchHHEEECCC-----CCEEEeeCCCccccCcCccccccccccccchhhccccCCccCccccCchhc
Confidence            999999999999999999999887     789999999987421110000          00011134688999999998


Q ss_pred             hcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccccc-----cccCCCCCCccHHHHHHHHHhhhhCCCCCC
Q psy4039         423 LATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV-----NALPQLNTNVPEVMRRLVAKLLENDPSDRP  497 (588)
Q Consensus       423 ~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~-----~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rp  497 (588)
                      .+..      .+.++|||||||++|||++|..||.+.........     ...+.....+|.++.++|.+||+.||++||
T Consensus       189 ~~~~------~~~~~Di~slG~vl~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~  262 (305)
T cd05609         189 LRQG------YGKPVDWWAMGIILYEFLVGCVPFFGDTPEELFGQVISDDIEWPEGDEALPADAQDLISRLLRQNPLERL  262 (305)
T ss_pred             cCCC------CCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcccCCCCccccCCHHHHHHHHHHhccChhhcc
Confidence            6544      45789999999999999999999976432211111     112222336789999999999999999999


Q ss_pred             CHHHHHHHHhhhhhcCCccccC
Q psy4039         498 SAELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       498 s~~e~l~~L~~~~~~~h~w~~~  519 (588)
                      ++..+.++++      |||+..
T Consensus       263 ~~~~~~~ll~------~~~~~~  278 (305)
T cd05609         263 GTGGAFEVKQ------HRFFLG  278 (305)
T ss_pred             CccCHHHHHh------CccccC
Confidence            9555544455      999853

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=100.00  E-value=2.9e-37  Score=318.55  Aligned_cols=265  Identities=23%  Similarity=0.246  Sum_probs=199.9

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      .++|.+.+.||+|+||.||+|.+.  ++.||||.+.......               .......+|+.+++.+    +||
T Consensus         7 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~---------------~~~~~~~~e~~~l~~l----~h~   67 (311)
T cd07866           7 LRDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKD---------------GFPITALREIKILKKL----KHP   67 (311)
T ss_pred             cccEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCC---------------CcchhHHHHHHHHHhc----CCC
Confidence            489999999999999999999986  7899999985322111               0112345688999887    999


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      ||+++++++.+....                    .......++++|||+.++|...+......+++..+..++.|+++|
T Consensus        68 ~i~~~~~~~~~~~~~--------------------~~~~~~~~~lv~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~l~~a  127 (311)
T cd07866          68 NVVPLIDMAVERPDK--------------------SKRKRGSVYMVTPYMDHDLSGLLENPSVKLTESQIKCYMLQLLEG  127 (311)
T ss_pred             Cccchhhheeccccc--------------------ccccCceEEEEEecCCcCHHHHHhccccCCCHHHHHHHHHHHHHH
Confidence            999999987763210                    011233589999999888988887655589999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCcccc------ccccccccCCccccchhHHhcCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQY------SSADIELGGNVALMAPEVALATP  426 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~------~~~~~~~~GT~~Y~APE~l~~~~  426 (588)
                      |.|||++||+||||||+||+++++     +.++|+|||+++..........      ........||+.|+|||++.+..
T Consensus       128 l~~lH~~~i~H~dl~p~nil~~~~-----~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  202 (311)
T cd07866         128 INYLHENHILHRDIKAANILIDNQ-----GILKIADFGLARPYDGPPPNPKGGGGGGTRKYTNLVVTRWYRPPELLLGER  202 (311)
T ss_pred             HHHHHhCCeecCCCCHHHEEECCC-----CCEEECcCccchhccCCCcccccCCcccccccccceeccCcCChHHhhCCC
Confidence            999999999999999999999987     8999999999986543221110      11112356789999999986542


Q ss_pred             CCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccccc---------------------c----cccCC-------CC
Q psy4039         427 GLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE---------------------V----NALPQ-------LN  474 (588)
Q Consensus       427 ~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~---------------------~----~~~~~-------~~  474 (588)
                      .     .+.++|||||||++|||++|++||.+........                     .    .....       ..
T Consensus       203 ~-----~~~~~Dv~slG~il~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (311)
T cd07866         203 R-----YTTAVDIWGIGCVFAEMFTRRPILQGKSDIDQLHLIFKLCGTPTEETWPGWRSLPGCEGVHSFTNYPRTLEERF  277 (311)
T ss_pred             c-----cCchhHhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhchhhhhcccccccccCCCCCccHHHHc
Confidence            1     3568999999999999999999986532110000                     0    00000       01


Q ss_pred             CCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccc
Q psy4039         475 TNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWL  517 (588)
Q Consensus       475 ~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~  517 (588)
                      ..+++++.+++.+||+.||.+|||+.+++.         |||+
T Consensus       278 ~~~~~~~~~~i~~~l~~~p~~R~t~~ell~---------~~~f  311 (311)
T cd07866         278 GKLGPEGLDLLSKLLSLDPYKRLTASDALE---------HPYF  311 (311)
T ss_pred             ccCChhHHHHHHHHcccCcccCcCHHHHhc---------CCCC
Confidence            234567899999999999999999999999         9996

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>KOG4257|consensus

Probab=100.00  E-value=3.6e-38  Score=331.61  Aligned_cols=250  Identities=22%  Similarity=0.294  Sum_probs=208.6

Q ss_pred             CeEEeeeecccCceeEEEEEEC------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCC
Q psy4039         197 DIQIGKFIAKGTNAVVYEATFR------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPP  270 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~~~------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~  270 (588)
                      ...+.+.||.|-||.||+|++.      .-.||||.++.....                ...+.|..|..+|+.+    +
T Consensus       390 ~Itl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~----------------d~tekflqEa~iMrnf----d  449 (974)
T KOG4257|consen  390 LITLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTP----------------DDTEKFLQEASIMRNF----D  449 (974)
T ss_pred             hccHHHhhcCCcccceeeeEecccccCcceeeeeehhccCCCh----------------hhHHHHHHHHHHHHhC----C
Confidence            3455679999999999999986      236999998653322                2456677899999998    9


Q ss_pred             CCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCC-CcHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4039         271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYN-TDLRNYLRERCAQLSMHERVLLFTQL  349 (588)
Q Consensus       271 HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~-gsL~~~L~~~~~~l~~~~~~~i~~ql  349 (588)
                      |||||+|+|+|.+..                             .|+|||.+. |.|..||..+...|+......++.||
T Consensus       450 HphIikLIGv~~e~P-----------------------------~WivmEL~~~GELr~yLq~nk~sL~l~tL~ly~~Qi  500 (974)
T KOG4257|consen  450 HPHIIKLIGVCVEQP-----------------------------MWIVMELAPLGELREYLQQNKDSLPLRTLTLYCYQI  500 (974)
T ss_pred             Ccchhheeeeeeccc-----------------------------eeEEEecccchhHHHHHHhccccchHHHHHHHHHHH
Confidence            999999999998743                             899999994 99999999887789999999999999


Q ss_pred             HHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCc
Q psy4039         350 LEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF  429 (588)
Q Consensus       350 ~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~  429 (588)
                      +.||+|||+.+.|||||-.+|||+.+.     ..+||+|||++|..........+    ...-.+.|||||.+.-..   
T Consensus       501 ~talaYLeSkrfVHRDIAaRNiLVsSp-----~CVKLaDFGLSR~~ed~~yYkaS----~~kLPIKWmaPESINfRr---  568 (974)
T KOG4257|consen  501 CTALAYLESKRFVHRDIAARNILVSSP-----QCVKLADFGLSRYLEDDAYYKAS----RGKLPIKWMAPESINFRR---  568 (974)
T ss_pred             HHHHHHHHhhchhhhhhhhhheeecCc-----ceeeecccchhhhccccchhhcc----ccccceeecCccccchhc---
Confidence            999999999999999999999999877     67999999999998764432221    223466899999986544   


Q ss_pred             cCCCCCcCchhhHHHHHHHHhc-CCCCCcccc---ccccccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHH
Q psy4039         430 SFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSA---RNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATV  505 (588)
Q Consensus       430 ~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~---~~~~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~  505 (588)
                         .++++|||.|||++||++. |..||.+-.   ....++.+.+.+.|++||+.+..|+.+||+.||.+||++.++...
T Consensus       569 ---FTtASDVWMFgVCmWEIl~lGvkPfqgvkNsDVI~~iEnGeRlP~P~nCPp~LYslmskcWayeP~kRPrftei~~~  645 (974)
T KOG4257|consen  569 ---FTTASDVWMFGVCMWEILSLGVKPFQGVKNSDVIGHIENGERLPCPPNCPPALYSLMSKCWAYEPSKRPRFTEIKAI  645 (974)
T ss_pred             ---ccchhhHHHHHHHHHHHHHhcCCccccccccceEEEecCCCCCCCCCCCChHHHHHHHHHhccCcccCCcHHHHHHH
Confidence               5588999999999999986 899998732   233456677888999999999999999999999999999999887


Q ss_pred             Hhhhh
Q psy4039         506 CQLYL  510 (588)
Q Consensus       506 L~~~~  510 (588)
                      |...+
T Consensus       646 lsdv~  650 (974)
T KOG4257|consen  646 LSDVL  650 (974)
T ss_pred             HHHHH
Confidence            76544

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=100.00  E-value=2.4e-37  Score=315.55  Aligned_cols=252  Identities=19%  Similarity=0.252  Sum_probs=196.4

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||.||+|.+.  ++.||||.++....               .......+.+|+.+++.+    .|||
T Consensus         1 ~~y~~~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~---------------~~~~~~~~~~e~~~l~~l----~~~~   61 (288)
T cd07833           1 NKYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESED---------------DEDVKKTALREVKVLRQL----RHEN   61 (288)
T ss_pred             CceeEEEEecccCCeeEEEEEeCCCCcEEEEehhhhhcc---------------cccchhHHHHHHHHHHhc----CCCC
Confidence            46999999999999999999987  78999998843211               111234566799999887    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      |+++++++.+..                            ..+++|||+++++.+.+..+...+++.++..++.||+.||
T Consensus        62 i~~~~~~~~~~~----------------------------~~~iv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l  113 (288)
T cd07833          62 IVNLKEAFRRKG----------------------------RLYLVFEYVERTLLELLEASPGGLPPDAVRSYIWQLLQAI  113 (288)
T ss_pred             eeehhheEEECC----------------------------EEEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence            999999987632                            4899999997665555544444799999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN  433 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~  433 (588)
                      .|||+++|+||||||+||+++.+     +.+||+|||++..........    .....|+..|+|||++.+...     .
T Consensus       114 ~~LH~~~i~H~dl~~~ni~~~~~-----~~~kl~d~g~~~~~~~~~~~~----~~~~~~~~~~~~PE~~~~~~~-----~  179 (288)
T cd07833         114 AYCHSHNIIHRDIKPENILVSES-----GVLKLCDFGFARALRARPASP----LTDYVATRWYRAPELLVGDTN-----Y  179 (288)
T ss_pred             HHHHHCCeecCCCCHHHeEECCC-----CCEEEEeeecccccCCCcccc----ccCcccccCCcCCchhcCCCC-----c
Confidence            99999999999999999999987     899999999998765432211    124568899999999976521     4


Q ss_pred             CCcCchhhHHHHHHHHhcCCCCCccccccc------------------------cccccccC----------CCCCCccH
Q psy4039         434 YSKSDAWTAGTVAYEIFGHDNPFYQSARNT------------------------DYEVNALP----------QLNTNVPE  479 (588)
Q Consensus       434 ~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~------------------------~~~~~~~~----------~~~~~~~~  479 (588)
                      +.++||||||+++|+|++|.+||.+.....                        .+.....+          ..+..+++
T Consensus       180 ~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (288)
T cd07833         180 GKPVDVWAIGCIMAELLDGEPLFPGDSDIDQLYLIQKCLGPLPPSHQELFSSNPRFAGVAFPEPSQPESLERRYPGKVSS  259 (288)
T ss_pred             CchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHhhhcccCccccccccCCCCCcHHHHHhcCCccch
Confidence            578999999999999999999986421100                        00000000          12234588


Q ss_pred             HHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccc
Q psy4039         480 VMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWL  517 (588)
Q Consensus       480 ~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~  517 (588)
                      ++.++|++||..||++|||+++++.         |||+
T Consensus       260 ~~~~li~~~l~~~p~~Rps~~~il~---------~~~f  288 (288)
T cd07833         260 PALDFLKACLRMDPKERLTCDELLQ---------HPYF  288 (288)
T ss_pred             HHHHHHHHHhccCchhcccHHHHhc---------CCCC
Confidence            9999999999999999999999999         9996

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=100.00  E-value=4.1e-37  Score=310.11  Aligned_cols=252  Identities=22%  Similarity=0.287  Sum_probs=199.4

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEEC-CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCC
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLP  269 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~  269 (588)
                      |++..++|++.+.||+|+||.||++.+. +..+|+|.+....                  .....+.+|+.+++.+    
T Consensus         1 ~~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~iK~~~~~~------------------~~~~~~~~e~~~l~~l----   58 (260)
T cd05073           1 WEIPRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS------------------MSVEAFLAEANVMKTL----   58 (260)
T ss_pred             CcccccceeEEeEecCccceEEEEEEecCCccEEEEecCCCh------------------hHHHHHHHHHHHHHhc----
Confidence            5667799999999999999999999875 5679999874211                  0123466789999887    


Q ss_pred             CCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh-cCCCCHHHHHHHHH
Q psy4039         270 PHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER-CAQLSMHERVLLFT  347 (588)
Q Consensus       270 ~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~-~~~l~~~~~~~i~~  347 (588)
                      +|+||+++++++.+.                             ..+++|||+ +++|.+++... ...+++..+..++.
T Consensus        59 ~~~~i~~~~~~~~~~-----------------------------~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~  109 (260)
T cd05073          59 QHDKLVKLHAVVTKE-----------------------------PIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSA  109 (260)
T ss_pred             CCCCcceEEEEEcCC-----------------------------CeEEEEEeCCCCcHHHHHHhCCccccCHHHHHHHHH
Confidence            899999999887641                             279999999 57999999864 34689999999999


Q ss_pred             HHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCC
Q psy4039         348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG  427 (588)
Q Consensus       348 ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~  427 (588)
                      |++.||.|||+.|++||||||+||+++.+     +.+||+|||++..........    .....++..|+|||++.... 
T Consensus       110 ~l~~aL~~lH~~~i~H~dl~p~ni~i~~~-----~~~~l~d~~~~~~~~~~~~~~----~~~~~~~~~y~~PE~~~~~~-  179 (260)
T cd05073         110 QIAEGMAFIEQRNYIHRDLRAANILVSAS-----LVCKIADFGLARVIEDNEYTA----REGAKFPIKWTAPEAINFGS-  179 (260)
T ss_pred             HHHHHHHHHHhCCccccccCcceEEEcCC-----CcEEECCCcceeeccCCCccc----ccCCcccccccCHhHhccCC-
Confidence            99999999999999999999999999887     899999999997654422111    11234567899999987544 


Q ss_pred             CccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHH
Q psy4039         428 LFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAA  503 (588)
Q Consensus       428 ~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l  503 (588)
                           .+.++|||||||++|++++ |..||........   .......+.+...+.++.+++.+||+.||++||++.+++
T Consensus       180 -----~~~~~Di~slG~~l~~l~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~l~  254 (260)
T cd05073         180 -----FTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALERGYRMPRPENCPEELYNIMMRCWKNRPEERPTFEYIQ  254 (260)
T ss_pred             -----cCccccchHHHHHHHHHHhcCCCCCCCCCHHHHHHHHhCCCCCCCcccCCHHHHHHHHHHcccCcccCcCHHHHH
Confidence                 4468999999999999998 8999976322111   111222234567889999999999999999999999999


Q ss_pred             HHHhh
Q psy4039         504 TVCQL  508 (588)
Q Consensus       504 ~~L~~  508 (588)
                      +.|+.
T Consensus       255 ~~L~~  259 (260)
T cd05073         255 SVLDD  259 (260)
T ss_pred             HHHhc
Confidence            87763

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=100.00  E-value=2.6e-37  Score=319.76  Aligned_cols=255  Identities=24%  Similarity=0.297  Sum_probs=200.7

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      +.|++.+.||+|+||.||+|.+.  ++.||+|.+........              .....+.+|+.+++.+    +|||
T Consensus        15 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~--------------~~~~~~~~Ei~~l~~l----~h~n   76 (307)
T cd06607          15 KLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSN--------------EKWQDIIKEVRFLQQL----RHPN   76 (307)
T ss_pred             hhhhhheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcH--------------HHHHHHHHHHHHHHhC----CCCC
Confidence            66899999999999999999986  78999999853221111              0123456788899887    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      |++++++|.+..                            ..++||||+.|+|.+++......+++..+..++.|++.||
T Consensus        77 iv~~~~~~~~~~----------------------------~~~lv~e~~~g~l~~~~~~~~~~l~~~~~~~~~~ql~~~L  128 (307)
T cd06607          77 TIEYKGCYLREH----------------------------TAWLVMEYCLGSASDILEVHKKPLQEVEIAAICHGALQGL  128 (307)
T ss_pred             EEEEEEEEEeCC----------------------------eEEEEHHhhCCCHHHHHHHcccCCCHHHHHHHHHHHHHHH
Confidence            999999988632                            3899999999999888876555799999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN  433 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~  433 (588)
                      .|||+.+|+||||+|+||+++++     +.++|+|||++......         ....|++.|+|||++.+...   ...
T Consensus       129 ~~LH~~~i~H~dl~p~nIl~~~~-----~~~kL~dfg~~~~~~~~---------~~~~~~~~y~aPE~~~~~~~---~~~  191 (307)
T cd06607         129 AYLHSHERIHRDIKAGNILLTEP-----GTVKLADFGSASLVSPA---------NSFVGTPYWMAPEVILAMDE---GQY  191 (307)
T ss_pred             HHHHHCCceecCCCcccEEECCC-----CCEEEeecCcceecCCC---------CCccCCccccCceeeeccCC---CCC
Confidence            99999999999999999999987     78999999998654321         13468889999998753211   114


Q ss_pred             CCcCchhhHHHHHHHHhcCCCCCccccccccc---cccccCCC-CCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhh
Q psy4039         434 YSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY---EVNALPQL-NTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLY  509 (588)
Q Consensus       434 ~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~---~~~~~~~~-~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~  509 (588)
                      +.++||||||+++|||++|..||.+.......   .....+.. +..++.++++++.+||..||++||++.+++.     
T Consensus       192 ~~~sDv~s~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~-----  266 (307)
T cd06607         192 DGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNDSPTLSSNDWSDYFRNFVDSCLQKIPQDRPSSEELLK-----  266 (307)
T ss_pred             CcccchHHHHHHHHHHHcCCCCCCCccHHHHHHHHhcCCCCCCCchhhCHHHHHHHHHHhcCChhhCcCHHHHhc-----
Confidence            57899999999999999999999763211110   01111122 2346789999999999999999999999998     


Q ss_pred             hhcCCccccCCCC
Q psy4039         510 LWAPKHWLYGATP  522 (588)
Q Consensus       510 ~~~~h~w~~~~~~  522 (588)
                          |||+....+
T Consensus       267 ----~~~~~~~~~  275 (307)
T cd06607         267 ----HRFVLRERP  275 (307)
T ss_pred             ----ChhhcccCC
Confidence                999986544

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=100.00  E-value=5.7e-37  Score=307.65  Aligned_cols=249  Identities=21%  Similarity=0.231  Sum_probs=199.7

Q ss_pred             CeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCce
Q psy4039         197 DIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNV  274 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNI  274 (588)
                      +|+..+.||.|+||.||.+...  +..+|+|.+.......               .....+.+|+.+++.+    +|+||
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~---------------~~~~~~~~e~~~l~~~----~h~~i   61 (256)
T cd08221           1 HYIPIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSE---------------KERRDALNEIVILSLL----QHPNI   61 (256)
T ss_pred             CceEeeEecccCCceEEEEEEcCCCcEEEEEEEeecccch---------------hHHHHHHHHHHHHHhC----CCCCe
Confidence            5889999999999998888775  7899999985322111               0223456789999887    99999


Q ss_pred             EEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh-cCCCCHHHHHHHHHHHHHH
Q psy4039         275 VVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER-CAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       275 V~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~-~~~l~~~~~~~i~~ql~~g  352 (588)
                      +++++++.+..                            .++++|||+ +++|.+++... ...+++.++..++.|++.|
T Consensus        62 ~~~~~~~~~~~----------------------------~~~~~~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~  113 (256)
T cd08221          62 IAYYNHFMDDN----------------------------TLLIEMEYANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSA  113 (256)
T ss_pred             eEEEeEEecCC----------------------------eEEEEEEecCCCcHHHHHHhccccCCCHHHHHHHHHHHHHH
Confidence            99999987632                            489999999 57999999875 4468999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||+.+++||||||+||+++.+     +.+||+|||++........     ......|++.|+|||++.+..      
T Consensus       114 l~~lh~~~i~h~dl~p~ni~~~~~-----~~~kl~d~~~~~~~~~~~~-----~~~~~~~~~~y~ape~~~~~~------  177 (256)
T cd08221         114 VSYIHKAGILHRDIKTLNIFLTKA-----GLIKLGDFGISKILGSEYS-----MAETVVGTPYYMSPELCQGVK------  177 (256)
T ss_pred             HHHHHhCCccccCCChHhEEEeCC-----CCEEECcCcceEEcccccc-----cccccCCCccccCHhhcCCCC------
Confidence            999999999999999999999987     7899999999987644221     112456899999999986543      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCccccccccc---cccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhh
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY---EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLY  509 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~---~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~  509 (588)
                      .+.++||||||+++|||++|..||.........   ........+..++.++.+++.+||..||++||+++++++     
T Consensus       178 ~~~~~Dv~slG~i~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~s~~~ll~-----  252 (256)
T cd08221         178 YNFKSDIWALGCVLYELLTLKRTFDATNPLNLVVKIVQGNYTPVVSVYSSELISLVHSLLQQDPEKRPTADEVLD-----  252 (256)
T ss_pred             CCCcchhHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCCCccccCHHHHHHHHHHcccCcccCCCHHHHhh-----
Confidence            346799999999999999999999764322211   112223344667899999999999999999999999999     


Q ss_pred             hhcCCccc
Q psy4039         510 LWAPKHWL  517 (588)
Q Consensus       510 ~~~~h~w~  517 (588)
                          |+|+
T Consensus       253 ----~~~l  256 (256)
T cd08221         253 ----QPLL  256 (256)
T ss_pred             ----CcCC
Confidence                8875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=100.00  E-value=2.1e-37  Score=313.76  Aligned_cols=255  Identities=25%  Similarity=0.321  Sum_probs=199.9

Q ss_pred             cccCCeEEeeeecccCceeEEEEEECC-----eeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcC
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFRG-----VEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVEN  267 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~g-----~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~  267 (588)
                      +..++|.+.+.||+|+||.||+|.+..     ..||||.......   .             ...+.+.+|+.+++.+  
T Consensus         3 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~---~-------------~~~~~~~~e~~~l~~~--   64 (270)
T cd05056           3 IQREDITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTS---P-------------SVREKFLQEAYIMRQF--   64 (270)
T ss_pred             echhhceeeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCC---H-------------HHHHHHHHHHHHHHhC--
Confidence            344779999999999999999998752     3699998743211   0             0223456788888887  


Q ss_pred             CCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHH
Q psy4039         268 LPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLF  346 (588)
Q Consensus       268 l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~  346 (588)
                        .||||+++++++.+.                             ..+++|||+ +|+|.+++......+++..+..++
T Consensus        65 --~h~~i~~~~~~~~~~-----------------------------~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~  113 (270)
T cd05056          65 --DHPHIVKLIGVITEN-----------------------------PVWIVMELAPLGELRSYLQVNKYSLDLASLILYS  113 (270)
T ss_pred             --CCCchhceeEEEcCC-----------------------------CcEEEEEcCCCCcHHHHHHhCCCCCCHHHHHHHH
Confidence              899999999987652                             268999999 589999998765579999999999


Q ss_pred             HHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCC
Q psy4039         347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP  426 (588)
Q Consensus       347 ~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~  426 (588)
                      .|++.||.|||+.+++||||||+|||++.+     +.++|+|||+++..........    ....+++.|+|||.+....
T Consensus       114 ~~l~~~l~~lH~~~~~H~dl~p~nili~~~-----~~~~l~d~g~~~~~~~~~~~~~----~~~~~~~~y~aPE~~~~~~  184 (270)
T cd05056         114 YQLSTALAYLESKRFVHRDIAARNVLVSSP-----DCVKLGDFGLSRYLEDESYYKA----SKGKLPIKWMAPESINFRR  184 (270)
T ss_pred             HHHHHHHHHHHhCCeeccccChheEEEecC-----CCeEEccCceeeecccccceec----CCCCccccccChhhhccCC
Confidence            999999999999999999999999999987     7899999999987544321111    1223567899999986554


Q ss_pred             CCccCCCCCcCchhhHHHHHHHHhc-CCCCCccccccc---cccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHH
Q psy4039         427 GLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNT---DYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA  502 (588)
Q Consensus       427 ~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~---~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~  502 (588)
                            .+.++|||||||++||+++ |..||.......   ..........+..+|.++.+++.+||..+|++|||+.++
T Consensus       185 ------~~~~~Di~slG~il~el~~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~  258 (270)
T cd05056         185 ------FTSASDVWMFGVCMWEILMLGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSKRPRFTEL  258 (270)
T ss_pred             ------CCchhhhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHH
Confidence                  4478999999999999986 999996643211   111223334567889999999999999999999999999


Q ss_pred             HHHHhhhhh
Q psy4039         503 ATVCQLYLW  511 (588)
Q Consensus       503 l~~L~~~~~  511 (588)
                      +..|+...+
T Consensus       259 ~~~l~~~~~  267 (270)
T cd05056         259 KAQLSDILQ  267 (270)
T ss_pred             HHHHHHHHh
Confidence            998776543

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>KOG0612|consensus

Probab=100.00  E-value=7.3e-39  Score=356.48  Aligned_cols=259  Identities=24%  Similarity=0.311  Sum_probs=210.8

Q ss_pred             cccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCC
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPP  270 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~  270 (588)
                      ...++|.+.++||+|+||.|..++++  ++.||+|++.+-           .|.+.   .....|.+|-.||..-    +
T Consensus        72 l~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~-----------eMlKr---~~tA~F~EERDimv~~----n  133 (1317)
T KOG0612|consen   72 LKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNKW-----------EMLKR---AETACFREERDIMVFG----N  133 (1317)
T ss_pred             CCHHhhHHHHHhcccccceeEEEEeeccccchhHHHhhHH-----------HHhhc---hhHHHHHHHhHHHHcC----C
Confidence            34489999999999999999999997  789999998431           12211   2344677788898875    7


Q ss_pred             CCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4039         271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQL  349 (588)
Q Consensus       271 HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql  349 (588)
                      .+-||+++..|+|..                            ++|+||||| ||+|..++.+-. .+++..++.++..|
T Consensus       134 s~Wiv~LhyAFQD~~----------------------------~LYlVMdY~pGGDlltLlSk~~-~~pE~~ArFY~aEi  184 (1317)
T KOG0612|consen  134 SEWIVQLHYAFQDER----------------------------YLYLVMDYMPGGDLLTLLSKFD-RLPEDWARFYTAEI  184 (1317)
T ss_pred             cHHHHHHHHHhcCcc----------------------------ceEEEEecccCchHHHHHhhcC-CChHHHHHHHHHHH
Confidence            899999999998843                            599999999 799999999876 89999999999999


Q ss_pred             HHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCc
Q psy4039         350 LEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF  429 (588)
Q Consensus       350 ~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~  429 (588)
                      +-||.-||+.|+|||||||+|||||..     |++||+|||.|-..........    ...+|||-|++||++....+. 
T Consensus       185 VlAldslH~mgyVHRDiKPDNvLld~~-----GHikLADFGsClkm~~dG~V~s----~~aVGTPDYISPEvLqs~~~~-  254 (1317)
T KOG0612|consen  185 VLALDSLHSMGYVHRDIKPDNVLLDKS-----GHIKLADFGSCLKMDADGTVRS----SVAVGTPDYISPEVLQSQGDG-  254 (1317)
T ss_pred             HHHHHHHHhccceeccCCcceeEeccc-----CcEeeccchhHHhcCCCCcEEe----ccccCCCCccCHHHHHhhcCC-
Confidence            999999999999999999999999998     9999999999987664333222    256899999999999866543 


Q ss_pred             cCCCCCcCchhhHHHHHHHHhcCCCCCccccccccccc----cccCCCC--CCccHHHHHHHHHhhhhCCCCCCC---HH
Q psy4039         430 SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV----NALPQLN--TNVPEVMRRLVAKLLENDPSDRPS---AE  500 (588)
Q Consensus       430 ~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~----~~~~~~~--~~~~~~l~~Li~~~L~~dP~~Rps---~~  500 (588)
                      .+.|+..||+||+||++|||++|..||+.+.....|..    ...-.+|  ..+|+++++||.+++. +|+.|..   ++
T Consensus       255 ~g~yG~ecDwWSlGV~~YEMlyG~TPFYadslveTY~KIm~hk~~l~FP~~~~VSeeakdLI~~ll~-~~e~RLgrngie  333 (1317)
T KOG0612|consen  255 KGEYGRECDWWSLGVFMYEMLYGETPFYADSLVETYGKIMNHKESLSFPDETDVSEEAKDLIEALLC-DREVRLGRNGIE  333 (1317)
T ss_pred             ccccCCccchhhhHHHHHHHHcCCCcchHHHHHHHHHHHhchhhhcCCCcccccCHHHHHHHHHHhc-ChhhhcccccHH
Confidence            34577889999999999999999999988633322211    1111233  4589999999999885 6899998   99


Q ss_pred             HHHHHHhhhhhcCCcccc
Q psy4039         501 LAATVCQLYLWAPKHWLY  518 (588)
Q Consensus       501 e~l~~L~~~~~~~h~w~~  518 (588)
                      ++.+         ||||.
T Consensus       334 dik~---------HpFF~  342 (1317)
T KOG0612|consen  334 DIKN---------HPFFE  342 (1317)
T ss_pred             HHHh---------Ccccc
Confidence            9888         88886

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=100.00  E-value=2e-37  Score=315.73  Aligned_cols=249  Identities=24%  Similarity=0.312  Sum_probs=196.1

Q ss_pred             CeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCce
Q psy4039         197 DIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNV  274 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNI  274 (588)
                      +|++.+.||.|++|.||+|++.  +..||||.+.......                ....+.+|+.+++.+    +||||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~----------------~~~~~~~E~~~l~~l----~h~~i   60 (284)
T cd07836           1 NFKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEG----------------TPSTAIREISLMKEL----KHENI   60 (284)
T ss_pred             CceEeeeeccCCceEEEEEEECCCCeEEEEEEeccccccc----------------chHHHHHHHHHHHhh----cCCCE
Confidence            5889999999999999999996  8899999985422111                123345688999887    89999


Q ss_pred             EEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhc--CCCCHHHHHHHHHHHHHH
Q psy4039         275 VVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERC--AQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       275 V~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~--~~l~~~~~~~i~~ql~~g  352 (588)
                      +++++++.+..                            ..++||||+.++|.+++....  ..+++..+..++.|++.|
T Consensus        61 ~~~~~~~~~~~----------------------------~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~  112 (284)
T cd07836          61 VRLHDVIHTEN----------------------------KLMLVFEYMDKDLKKYMDTHGVRGALDPNTVKSFTYQLLKG  112 (284)
T ss_pred             eeeeeeEeeCC----------------------------cEEEEEecCCccHHHHHHhcCCCCCcCHHHHHHHHHHHHHH
Confidence            99999988632                            389999999889999987653  468999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||++||+||||||+||+++++     +.++|+|||+++.......     ......+|+.|+|||++.+...     
T Consensus       113 l~~lH~~~i~h~dl~p~ni~~~~~-----~~~~l~d~g~~~~~~~~~~-----~~~~~~~~~~y~~PE~~~~~~~-----  177 (284)
T cd07836         113 IAFCHENRVLHRDLKPQNLLINKR-----GELKLADFGLARAFGIPVN-----TFSNEVVTLWYRAPDVLLGSRT-----  177 (284)
T ss_pred             HHHHHHCCeeeCCCCHHHEEECCC-----CcEEEeecchhhhhcCCcc-----ccccccccccccChHHhcCCCC-----
Confidence            999999999999999999999987     7899999999976543211     1113457889999999865431     


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcccccccccc--------------------c---cc--------cCCCCCCccHHH
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--------------------V---NA--------LPQLNTNVPEVM  481 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~--------------------~---~~--------~~~~~~~~~~~l  481 (588)
                      ++.++|||||||++|+|++|..||.+........                    .   ..        ...+...++.++
T Consensus       178 ~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (284)
T cd07836         178 YSTSIDIWSVGCIMAEMITGRPLFPGTNNEDQLLKIFRIMGTPTESTWPGISQLPEYKPTFPRYPPQDLQQLFPHADPLG  257 (284)
T ss_pred             CCcHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCChhhHHHHhcCchhcccccCCChHHHHHHhhhcCcHH
Confidence            3568999999999999999999997532110000                    0   00        001112457889


Q ss_pred             HHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccc
Q psy4039         482 RRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWL  517 (588)
Q Consensus       482 ~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~  517 (588)
                      ++++.+||+.||.+||+++++++         |||+
T Consensus       258 ~~~i~~~l~~~p~~R~~~~~~l~---------~~~f  284 (284)
T cd07836         258 IDLLHRLLQLNPELRISAHDALQ---------HPWF  284 (284)
T ss_pred             HHHHHHHhcCCcccCCCHHHHhc---------CCCC
Confidence            99999999999999999999998         9996

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=100.00  E-value=1.7e-37  Score=316.73  Aligned_cols=250  Identities=20%  Similarity=0.291  Sum_probs=193.5

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||.||+|.+.  ++.||+|.+......               ....+.+.+|+.+++.+    +|||
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~---------------~~~~~~~~~e~~~l~~l----~h~~   61 (286)
T cd07846           1 EKYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDD---------------KMVKKIAMREIRMLKQL----RHEN   61 (286)
T ss_pred             CceeEeeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCc---------------chhhHHHHHHHHHHHhc----CCcc
Confidence            47899999999999999999996  789999997421111               01223456789999887    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCC-CcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYN-TDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~-gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++++.+..                            ..++||||+. ++|..+.... ..+++.++..++.|+++|
T Consensus        62 i~~~~~~~~~~~----------------------------~~~lv~e~~~~~~l~~~~~~~-~~~~~~~~~~~~~~i~~~  112 (286)
T cd07846          62 LVNLIEVFRRKK----------------------------RLYLVFEFVDHTVLDDLEKYP-NGLDESRVRKYLFQILRG  112 (286)
T ss_pred             hhhHHHhcccCC----------------------------eEEEEEecCCccHHHHHHhcc-CCCCHHHHHHHHHHHHHH
Confidence            999999986532                            4899999995 5666655443 369999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||+.+|+||||+|+||+++++     +.++|+|||++.........     .....|+..|+|||++.+...     
T Consensus       113 l~~LH~~~i~h~~l~p~ni~~~~~-----~~~~l~dfg~~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~-----  177 (286)
T cd07846         113 IEFCHSHNIIHRDIKPENILVSQS-----GVVKLCDFGFARTLAAPGEV-----YTDYVATRWYRAPELLVGDTK-----  177 (286)
T ss_pred             HHHHHHCCccccCCCHHHEEECCC-----CcEEEEeeeeeeeccCCccc-----cCcccceeeccCcHHhccccc-----
Confidence            999999999999999999999987     78999999999775442211     113468899999999865331     


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcccccccc------------------------ccccccC---------CCCCCccH
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD------------------------YEVNALP---------QLNTNVPE  479 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~------------------------~~~~~~~---------~~~~~~~~  479 (588)
                      .+.++|||||||++|||++|++||........                        ......+         .....++.
T Consensus       178 ~~~~~Dv~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (286)
T cd07846         178 YGRAVDIWAVGCLVTEMLTGEPLFPGDSDIDQLYHIIKCLGNLIPRHQEIFQKNPLFAGMRLPEVKEIEPLEKRFPKLSG  257 (286)
T ss_pred             cCchHhHHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHhCCCchhhHHHhccchHhhccccccccCcchHHHhCCCcCH
Confidence            34679999999999999999999864221000                        0000000         11246788


Q ss_pred             HHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccc
Q psy4039         480 VMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWL  517 (588)
Q Consensus       480 ~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~  517 (588)
                      .+.+++.+||+.||++||++.+++.         |||+
T Consensus       258 ~~~~li~~~l~~~P~~Rp~~~~il~---------~~~~  286 (286)
T cd07846         258 LVLDLAKQCLRIDPDDRPSSSQLLH---------HEFF  286 (286)
T ss_pred             HHHHHHHHHhcCCcccchhHHHHhc---------CCCC
Confidence            9999999999999999999999998         9996

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.7e-37  Score=319.20  Aligned_cols=253  Identities=21%  Similarity=0.241  Sum_probs=193.6

Q ss_pred             cccCCeEEeeeecccCceeEEEEEECC----------------eeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhh
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFRG----------------VEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRL  256 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~g----------------~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~  256 (588)
                      +..++|++.+.||+|+||.||+|.+.+                ..||||.+.....   .             .....+.
T Consensus         2 ~~~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~---~-------------~~~~~~~   65 (295)
T cd05097           2 FPRQQLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVT---K-------------TARNDFL   65 (295)
T ss_pred             CchHhCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCC---H-------------HHHHHHH
Confidence            344789999999999999999998642                3589999853210   0             0123466


Q ss_pred             hHHHHHhhhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc-
Q psy4039         257 NEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC-  334 (588)
Q Consensus       257 ~Ei~il~~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~-  334 (588)
                      +|+++++.+    +||||+++++++....                            ..++||||+ +++|.+++.... 
T Consensus        66 ~ei~~l~~l----~h~~i~~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~~  113 (295)
T cd05097          66 KEIKIMSRL----KNPNIIRLLGVCVSDD----------------------------PLCMITEYMENGDLNQFLSQREI  113 (295)
T ss_pred             HHHHHHHhC----CCCCcCeEEEEEcCCC----------------------------ccEEEEecCCCCcHHHHHHhccc
Confidence            799999987    9999999999987532                            389999999 689999996532 


Q ss_pred             ----------CCCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccc
Q psy4039         335 ----------AQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYS  404 (588)
Q Consensus       335 ----------~~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~  404 (588)
                                ..+++..+..++.|++.||.|||+++++||||||+||+++.+     +.+||+|||+++........   
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~Nill~~~-----~~~kl~dfg~~~~~~~~~~~---  185 (295)
T cd05097         114 ESTFTHANNIPSVSIANLLYMAVQIASGMKYLASLNFVHRDLATRNCLVGNH-----YTIKIADFGMSRNLYSGDYY---  185 (295)
T ss_pred             cccccccccCCcccHHHHHHHHHHHHHHHHHHHhcCeeccccChhhEEEcCC-----CcEEecccccccccccCcce---
Confidence                      136889999999999999999999999999999999999977     78999999999765432111   


Q ss_pred             cccccccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc--CCCCCccccccccc----------cccccCC
Q psy4039         405 SADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG--HDNPFYQSARNTDY----------EVNALPQ  472 (588)
Q Consensus       405 ~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt--G~~Pf~~~~~~~~~----------~~~~~~~  472 (588)
                      .......+++.|+|||++.+..      .+.++|||||||++|||++  |..||.........          .......
T Consensus       186 ~~~~~~~~~~~y~aPE~~~~~~------~~~~~DvwSlG~~l~el~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (295)
T cd05097         186 RIQGRAVLPIRWMAWESILLGK------FTTASDVWAFGVTLWEMFTLCKEQPYSLLSDEQVIENTGEFFRNQGRQIYLS  259 (295)
T ss_pred             eccCcCcCceeecChhhhccCC------cCchhhHHHHHHHHHHHHHcCCCCCCcccChHHHHHHHHHhhhhccccccCC
Confidence            1111344678999999987654      4578999999999999988  66788652211100          0111123


Q ss_pred             CCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHh
Q psy4039         473 LNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       473 ~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~  507 (588)
                      .+..+|+.+.+++.+||+.||++|||++++++.|+
T Consensus       260 ~~~~~~~~l~~li~~~l~~~p~~RPs~~~i~~~l~  294 (295)
T cd05097         260 QTPLCPSPVFKLMMRCWSRDIKDRPTFNKIHHFLR  294 (295)
T ss_pred             CCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHh
Confidence            34567899999999999999999999999988664

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=100.00  E-value=6.5e-38  Score=318.95  Aligned_cols=249  Identities=21%  Similarity=0.241  Sum_probs=198.3

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      +.|+..+.||+|+||.||+|.+.  +..||||.+......                ...+.+.+|+.+++.+    +|||
T Consensus         4 ~~y~~~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~----------------~~~~~~~~e~~~l~~l----~h~~   63 (277)
T cd06642           4 ELFTKLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAE----------------DEIEDIQQEITVLSQC----DSPY   63 (277)
T ss_pred             HHHHHHHHhcCCCCeeEEEEEEcCCCeEEEEEEeccccch----------------HHHHHHHHHHHHHHcC----CCCc
Confidence            44667788999999999999886  789999998422110                0123466788888887    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++++.+.                            ...++||||+ +++|.+++...  .+++..+..++.|+++|
T Consensus        64 i~~~~~~~~~~----------------------------~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~i~~~  113 (277)
T cd06642          64 ITRYYGSYLKG----------------------------TKLWIIMEYLGGGSALDLLKPG--PLEETYIATILREILKG  113 (277)
T ss_pred             cHhhhcccccC----------------------------CceEEEEEccCCCcHHHHhhcC--CCCHHHHHHHHHHHHHH
Confidence            99999988652                            1489999999 57999988654  78999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||+++|+|+||+|+||+++.+     +.++|+|||++........     ......|+..|+|||++.+..      
T Consensus       114 l~~lH~~~ivH~dl~p~ni~i~~~-----~~~~l~dfg~~~~~~~~~~-----~~~~~~~~~~y~aPE~~~~~~------  177 (277)
T cd06642         114 LDYLHSERKIHRDIKAANVLLSEQ-----GDVKLADFGVAGQLTDTQI-----KRNTFVGTPFWMAPEVIKQSA------  177 (277)
T ss_pred             HHHHhcCCeeccCCChheEEEeCC-----CCEEEccccccccccCcch-----hhhcccCcccccCHHHhCcCC------
Confidence            999999999999999999999987     7899999999976543211     111346889999999987654      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhh
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLY  509 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~  509 (588)
                      .+.++|||||||++|||++|..||........   ......+.+...++.++.+++.+||+.+|++||++.++++     
T Consensus       178 ~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~-----  252 (277)
T cd06642         178 YDFKADIWSLGITAIELAKGEPPNSDLHPMRVLFLIPKNSPPTLEGQYSKPFKEFVEACLNKDPRFRPTAKELLK-----  252 (277)
T ss_pred             CchhhhHHHHHHHHHHHHhCCCCCcccchhhHHhhhhcCCCCCCCcccCHHHHHHHHHHccCCcccCcCHHHHHH-----
Confidence            45689999999999999999999865322111   1112233445568889999999999999999999999999     


Q ss_pred             hhcCCccccC
Q psy4039         510 LWAPKHWLYG  519 (588)
Q Consensus       510 ~~~~h~w~~~  519 (588)
                          |||+..
T Consensus       253 ----~~~~~~  258 (277)
T cd06642         253 ----HKFITR  258 (277)
T ss_pred             ----hHHHHH
Confidence                999863

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=100.00  E-value=4.1e-37  Score=308.73  Aligned_cols=248  Identities=20%  Similarity=0.259  Sum_probs=196.3

Q ss_pred             ccCCeEEeeeecccCceeEEEEEEC-CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         194 KVDDIQIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       194 ~~~~~~~~~~IG~G~fG~Vy~a~~~-g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      ...+|++.+.||+|+||.||+|.+. +..+|||.+.....                  ....+.+|+.+++.+    +||
T Consensus         2 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~k~~~~~~~------------------~~~~~~~e~~~l~~l----~~~   59 (256)
T cd05112           2 HPSELTLVQEIGSGQFGLVWLGYWLEKRKVAIKTIREGAM------------------SEEDFIEEAQVMMKL----SHP   59 (256)
T ss_pred             ChhHeEEEeeecCcccceEEEEEEeCCCeEEEEECCCCCC------------------CHHHHHHHHHHHHhC----CCC
Confidence            3478999999999999999999886 78999999843211                  123456789999887    899


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLE  351 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~  351 (588)
                      ||+++++++.+..                            ..+++|||+ +++|.+++......++++.+..++.|++.
T Consensus        60 ~i~~~~~~~~~~~----------------------------~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~  111 (256)
T cd05112          60 KLVQLYGVCTERS----------------------------PICLVFEFMEHGCLSDYLRAQRGKFSQETLLGMCLDVCE  111 (256)
T ss_pred             CeeeEEEEEccCC----------------------------ceEEEEEcCCCCcHHHHHHhCccCCCHHHHHHHHHHHHH
Confidence            9999999887532                            389999999 57999999876557899999999999999


Q ss_pred             HHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccC
Q psy4039         352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF  431 (588)
Q Consensus       352 gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~  431 (588)
                      ||.|||+.+++||||||+||+++.+     +.++|+|||+++........   . .....++..|+|||++.+..     
T Consensus       112 ~l~~lH~~~i~h~dl~p~ni~i~~~-----~~~~l~d~g~~~~~~~~~~~---~-~~~~~~~~~~~aPe~~~~~~-----  177 (256)
T cd05112         112 GMAYLESSNVIHRDLAARNCLVGEN-----QVVKVSDFGMTRFVLDDQYT---S-STGTKFPVKWSSPEVFSFSK-----  177 (256)
T ss_pred             HHHHHHHCCccccccccceEEEcCC-----CeEEECCCcceeecccCccc---c-cCCCccchhhcCHhHhccCC-----
Confidence            9999999999999999999999877     78999999998765432111   0 11233567899999987554     


Q ss_pred             CCCCcCchhhHHHHHHHHhc-CCCCCccccccccc---cccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHH
Q psy4039         432 VNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTDY---EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVC  506 (588)
Q Consensus       432 ~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~~---~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L  506 (588)
                       .+.++|||||||++|||++ |..||.........   ........+...+..+.+++.+||+.+|++|||+.++++.|
T Consensus       178 -~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~Rp~~~~~l~~l  255 (256)
T cd05112         178 -YSSKSDVWSFGVLMWEVFSEGKTPYENRSNSEVVETINAGFRLYKPRLASQSVYELMQHCWKERPEDRPSFSLLLHQL  255 (256)
T ss_pred             -cChHHHHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHcccChhhCCCHHHHHHhh
Confidence             4467999999999999998 99999753221111   11122233455789999999999999999999999998754

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=2.7e-37  Score=324.31  Aligned_cols=257  Identities=24%  Similarity=0.278  Sum_probs=199.2

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|.+.+.||+|+||+||+|.+.  +..||||.+.......               .......+|+.+++.+    +|||
T Consensus         5 ~~y~~~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~---------------~~~~~~~~E~~~l~~l----~h~n   65 (337)
T cd07858           5 TKYVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNR---------------IDAKRTLREIKLLRHL----DHEN   65 (337)
T ss_pred             cceeEEEEeccCCCeEEEEEEecCCCCeEEEEEeccccccc---------------chhHHHHHHHHHHHhc----CCCC
Confidence            67999999999999999999986  7899999985321100               0122345688888887    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      |+++++++....                       ......+|++|||++++|.+++...+ .+++..+..++.|++.||
T Consensus        66 i~~~~~~~~~~~-----------------------~~~~~~~~lv~e~~~~~L~~~~~~~~-~l~~~~~~~i~~qi~~aL  121 (337)
T cd07858          66 VIAIKDIMPPPH-----------------------REAFNDVYIVYELMDTDLHQIIRSSQ-TLSDDHCQYFLYQLLRGL  121 (337)
T ss_pred             ccchHHheeccc-----------------------ccccCcEEEEEeCCCCCHHHHHhcCC-CCCHHHHHHHHHHHHHHH
Confidence            999999887531                       11112489999999999999987654 799999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN  433 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~  433 (588)
                      .|||+++++||||||+||+++.+     +.+||+|||+++.......     ......||..|+|||.+.....     .
T Consensus       122 ~~LH~~~i~H~dlkp~Nil~~~~-----~~~kL~Dfg~~~~~~~~~~-----~~~~~~~~~~y~aPE~~~~~~~-----~  186 (337)
T cd07858         122 KYIHSANVLHRDLKPSNLLLNAN-----CDLKICDFGLARTTSEKGD-----FMTEYVVTRWYRAPELLLNCSE-----Y  186 (337)
T ss_pred             HHHHhCCEecCCCCHHHEEEcCC-----CCEEECcCccccccCCCcc-----cccccccccCccChHHHhcCCC-----C
Confidence            99999999999999999999987     7899999999986543211     1113457889999999865321     4


Q ss_pred             CCcCchhhHHHHHHHHhcCCCCCccccccc---------------ccc------------------ccccCCCCCCccHH
Q psy4039         434 YSKSDAWTAGTVAYEIFGHDNPFYQSARNT---------------DYE------------------VNALPQLNTNVPEV  480 (588)
Q Consensus       434 ~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~---------------~~~------------------~~~~~~~~~~~~~~  480 (588)
                      +.++|||||||++|+|++|++||.+.....               ...                  ..........++++
T Consensus       187 ~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (337)
T cd07858         187 TTAIDVWSVGCIFAELLGRKPLFPGKDYVHQLKLITELLGSPSEEDLGFIRNEKARRYIRSLPYTPRQSFARLFPHANPL  266 (337)
T ss_pred             CCcccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhCCCChHHhhhcCchhhhHHHHhcCcccccCHHHHcccCCHH
Confidence            578999999999999999999996531100               000                  00001123467889


Q ss_pred             HHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccC
Q psy4039         481 MRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       481 l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~  519 (588)
                      +.++|++||+.||++|||++++++         |||+..
T Consensus       267 ~~~li~~~l~~~P~~Rps~~ell~---------h~~~~~  296 (337)
T cd07858         267 AIDLLEKMLVFDPSKRITVEEALA---------HPYLAS  296 (337)
T ss_pred             HHHHHHHHhcCChhhccCHHHHHc---------Ccchhh
Confidence            999999999999999999999999         999973

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=100.00  E-value=7.5e-38  Score=315.44  Aligned_cols=249  Identities=24%  Similarity=0.278  Sum_probs=200.2

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||.||++.+.  ++.||+|.+......                .....+.+|+.+++.+    .|||
T Consensus         1 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~----------------~~~~~~~~e~~~l~~~----~~~~   60 (265)
T cd06605           1 DDLEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINE----------------AIQKQILRELDILHKC----NSPY   60 (265)
T ss_pred             CcchHHHHhcCCCCeEEEEEEEcCCCcEEEEEEEecccCh----------------HHHHHHHHHHHHHHHC----CCCc
Confidence            46788899999999999999997  789999998542211                1223456788888887    7999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCC-CcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYN-TDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~-gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++++.+.                            ...+++|||+. ++|.+++......+++..+..++.|+++|
T Consensus        61 i~~~~~~~~~~----------------------------~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~  112 (265)
T cd06605          61 IVGFYGAFYNN----------------------------GDISICMEYMDGGSLDKILKEVQGRIPERILGKIAVAVLKG  112 (265)
T ss_pred             hhhhheeeecC----------------------------CEEEEEEEecCCCcHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence            99999988763                            24999999995 79999998764589999999999999999


Q ss_pred             HHHHHh-CCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccC
Q psy4039         353 VTHLNM-HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF  431 (588)
Q Consensus       353 L~yLH~-~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~  431 (588)
                      |.|||+ .+++||||||+||+++.+     +.++|+|||.+.........       ...|+..|+|||++.+..     
T Consensus       113 l~~lH~~~~i~H~dl~~~ni~~~~~-----~~~~l~d~g~~~~~~~~~~~-------~~~~~~~y~~PE~~~~~~-----  175 (265)
T cd06605         113 LTYLHEKHKIIHRDVKPSNILVNSR-----GQIKLCDFGVSGQLVNSLAK-------TFVGTSSYMAPERIQGND-----  175 (265)
T ss_pred             HHHHcCCCCeecCCCCHHHEEECCC-----CCEEEeecccchhhHHHHhh-------cccCChhccCHHHHcCCC-----
Confidence            999999 999999999999999987     78999999998665322111       256888999999987654     


Q ss_pred             CCCCcCchhhHHHHHHHHhcCCCCCcccccc----c----cccccccCCCCCC-ccHHHHHHHHHhhhhCCCCCCCHHHH
Q psy4039         432 VNYSKSDAWTAGTVAYEIFGHDNPFYQSARN----T----DYEVNALPQLNTN-VPEVMRRLVAKLLENDPSDRPSAELA  502 (588)
Q Consensus       432 ~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~----~----~~~~~~~~~~~~~-~~~~l~~Li~~~L~~dP~~Rps~~e~  502 (588)
                       .+.++||||||+++|+|++|..||......    .    .......+.++.. ++++++++|.+||..||++|||+.++
T Consensus       176 -~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l  254 (265)
T cd06605         176 -YSVKSDIWSLGLSLIELATGRFPYPPENDPPDGIFELLQYIVNEPPPRLPSGKFSPDFQDFVNLCLIKDPRERPSYKEL  254 (265)
T ss_pred             -CCchhhHHHHHHHHHHHHhCCCCCCccccccccHHHHHHHHhcCCCCCCChhhcCHHHHHHHHHHcCCCchhCcCHHHH
Confidence             457899999999999999999999654110    0    0111222333333 78899999999999999999999999


Q ss_pred             HHHHhhhhhcCCccccC
Q psy4039         503 ATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       503 l~~L~~~~~~~h~w~~~  519 (588)
                      +.         |||++.
T Consensus       255 l~---------~~~~~~  262 (265)
T cd06605         255 LE---------HPFIKK  262 (265)
T ss_pred             hh---------Cchhhc
Confidence            99         999964

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=100.00  E-value=3.3e-37  Score=308.32  Aligned_cols=242  Identities=21%  Similarity=0.287  Sum_probs=189.9

Q ss_pred             eeecccCceeEEEEEEC-CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEEeee
Q psy4039         202 KFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFA  280 (588)
Q Consensus       202 ~~IG~G~fG~Vy~a~~~-g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l~~~  280 (588)
                      ++||+|+||.||+|... +..||+|.+.....   .             .....+.+|+.+++.+    +||||++++++
T Consensus         1 ~~ig~g~~g~vy~~~~~~~~~~a~K~~~~~~~---~-------------~~~~~~~~e~~~l~~l----~h~~i~~~~~~   60 (250)
T cd05085           1 ELLGKGNFGEVFKGTLKDKTPVAVKTCKEDLP---Q-------------ELKIKFLSEARILKQY----DHPNIVKLIGV   60 (250)
T ss_pred             CccCCCCCceEEEEEecCCcEEEEEecCCcCC---H-------------HHHHHHHHHHHHHHhC----CCCCcCeEEEE
Confidence            36999999999999876 67899999743110   0             0123456788888887    99999999999


Q ss_pred             eeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC
Q psy4039         281 FTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMH  359 (588)
Q Consensus       281 ~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yLH~~  359 (588)
                      +.+..                            ..++||||+ +++|.+++......+++..+..++.|++.||.|||++
T Consensus        61 ~~~~~----------------------------~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~  112 (250)
T cd05085          61 CTQRQ----------------------------PIYIVMELVPGGDFLSFLRKKKDELKTKQLVKFALDAAAGMAYLESK  112 (250)
T ss_pred             EecCC----------------------------ccEEEEECCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            87632                            389999999 6899999987655789999999999999999999999


Q ss_pred             CceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCCcCch
Q psy4039         360 RTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDA  439 (588)
Q Consensus       360 ~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDV  439 (588)
                      |++||||||+||+++.+     +.+||+|||++.....+...    ......+++.|+|||++.+..      .+.++||
T Consensus       113 ~~~H~dl~p~nili~~~-----~~~~l~d~g~~~~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~------~~~~~Di  177 (250)
T cd05085         113 NCIHRDLAARNCLVGEN-----NVLKISDFGMSRQEDDGIYS----SSGLKQIPIKWTAPEALNYGR------YSSESDV  177 (250)
T ss_pred             CeeecccChheEEEcCC-----CeEEECCCccceeccccccc----cCCCCCCcccccCHHHhccCC------CCchhHH
Confidence            99999999999999887     78999999999764432211    111234567899999986554      4578999


Q ss_pred             hhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHH
Q psy4039         440 WTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVC  506 (588)
Q Consensus       440 wS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L  506 (588)
                      |||||++||+++ |..||........   .........+..++.++.+++.+||+.+|++||++.++++.|
T Consensus       178 ~slG~ll~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l  248 (250)
T cd05085         178 WSYGILLWETFSLGVCPYPGMTNQQAREQVEKGYRMSCPQKCPDDVYKVMQRCWDYKPENRPKFSELQKEL  248 (250)
T ss_pred             HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHh
Confidence            999999999998 9999976422111   111222344567899999999999999999999999998754

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=100.00  E-value=1.6e-37  Score=312.33  Aligned_cols=248  Identities=23%  Similarity=0.325  Sum_probs=201.3

Q ss_pred             CeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCce
Q psy4039         197 DIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNV  274 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNI  274 (588)
                      +|++.+.||.|+||.||+|.+.  +..||+|.+.......              ....+.+.+|+.+++.+    +||||
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~--------------~~~~~~~~~e~~~l~~l----~h~~i   62 (258)
T cd05578           1 HFELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVE--------------KGSVRNVLNERRILQEL----NHPFL   62 (258)
T ss_pred             CceEEEEeccCCCceEEEEEEccCCcEEEEEEEehhhhcc--------------hhHHHHHHHHHHHHHhC----CCCCh
Confidence            5889999999999999999997  8899999985321110              01234566788888887    99999


Q ss_pred             EEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         275 VVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       275 V~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      +++++++.+.                            ..+++||||+ +++|.+++... ..+++.++..++.|+++||
T Consensus        63 ~~~~~~~~~~----------------------------~~~~lv~e~~~~~~L~~~l~~~-~~l~~~~~~~~~~~i~~~l  113 (258)
T cd05578          63 VNLWYSFQDE----------------------------ENMYLVVDLLLGGDLRYHLSQK-VKFSEEQVKFWICEIVLAL  113 (258)
T ss_pred             HHHHHhhcCC----------------------------CeEEEEEeCCCCCCHHHHHHhc-CCcCHHHHHHHHHHHHHHH
Confidence            9999887652                            2499999999 67999999876 3899999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN  433 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~  433 (588)
                      .|||+++|+|+||||+||+++++     +.++|+|||.+........      .....|+..|+|||++....      .
T Consensus       114 ~~lh~~~i~h~dl~~~nil~~~~-----~~~~l~d~~~~~~~~~~~~------~~~~~~~~~y~~PE~~~~~~------~  176 (258)
T cd05578         114 EYLHSKGIIHRDIKPDNILLDEQ-----GHVHITDFNIATKVTPDTL------TTSTSGTPGYMAPEVLCRQG------Y  176 (258)
T ss_pred             HHHHhCCeeccCCCHHHeEEcCC-----CCEEEeecccccccCCCcc------ccccCCChhhcCHHHHcccC------C
Confidence            99999999999999999999987     7899999999876544221      11355888999999987654      4


Q ss_pred             CCcCchhhHHHHHHHHhcCCCCCccccc--cccc---cccccCCCCCCccHHHHHHHHHhhhhCCCCCCCH--HHHHHHH
Q psy4039         434 YSKSDAWTAGTVAYEIFGHDNPFYQSAR--NTDY---EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSA--ELAATVC  506 (588)
Q Consensus       434 ~~ksDVwS~Gvil~ElltG~~Pf~~~~~--~~~~---~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~--~e~l~~L  506 (588)
                      +.++|+||||+++|+|++|..||.....  ...+   .....+..+..+|.++.++|.+||+.||.+||++  +++++  
T Consensus       177 ~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~l~~--  254 (258)
T cd05578         177 SVAVDWWSLGVTAYECLRGKRPYRGHSRTIRDQIRAKQETADVLYPATWSTEAIDAINKLLERDPQKRLGDNLKDLKN--  254 (258)
T ss_pred             CCcccchhhHHHHHHHHhCCCCCCCCCccHHHHHHHHhccccccCcccCcHHHHHHHHHHccCChhHcCCccHHHHhc--
Confidence            5789999999999999999999976432  1111   1113345667789999999999999999999999  89888  


Q ss_pred             hhhhhcCCccc
Q psy4039         507 QLYLWAPKHWL  517 (588)
Q Consensus       507 ~~~~~~~h~w~  517 (588)
                             ||||
T Consensus       255 -------~~~~  258 (258)
T cd05578         255 -------HPYF  258 (258)
T ss_pred             -------CCCC
Confidence                   9996

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=100.00  E-value=2.5e-37  Score=316.43  Aligned_cols=252  Identities=25%  Similarity=0.298  Sum_probs=195.7

Q ss_pred             ccCCeEEeeeecccCceeEEEEEEC-------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhc
Q psy4039         194 KVDDIQIGKFIAKGTNAVVYEATFR-------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVE  266 (588)
Q Consensus       194 ~~~~~~~~~~IG~G~fG~Vy~a~~~-------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~  266 (588)
                      ..++|++.+.||+|+||.||+|.+.       +..||+|++.....   .             .....+.+|+.+++.+ 
T Consensus         3 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~---~-------------~~~~~~~~ei~~l~~l-   65 (288)
T cd05050           3 PRNNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEAS---A-------------DMQADFQREAALMAEF-   65 (288)
T ss_pred             ChHhceecccccccccccEEEEEEcccCCCCcceeEEEEecCCCcC---H-------------HHHHHHHHHHHHHHhc-
Confidence            4478999999999999999999874       57899999843210   0             0123466789999887 


Q ss_pred             CCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc-----------
Q psy4039         267 NLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC-----------  334 (588)
Q Consensus       267 ~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~-----------  334 (588)
                         .||||+++++++.+..                            ..+++|||+ +|+|.+++....           
T Consensus        66 ---~h~~iv~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~  114 (288)
T cd05050          66 ---DHPNIVKLLGVCAVGK----------------------------PMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHST  114 (288)
T ss_pred             ---CCCchheEEEEEcCCC----------------------------ccEEEEecCCCCCHHHHHHHcCccccccccccc
Confidence               9999999999887632                            379999999 579999997531           


Q ss_pred             ----------CCCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccc
Q psy4039         335 ----------AQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYS  404 (588)
Q Consensus       335 ----------~~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~  404 (588)
                                ..+++.+++.++.|++.||.|||+++++||||||+|||++.+     +.++|+|||+++.........  
T Consensus       115 ~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH~~~i~H~dl~p~nil~~~~-----~~~~l~dfg~~~~~~~~~~~~--  187 (288)
T cd05050         115 SSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSERKFVHRDLATRNCLVGEN-----MVVKIADFGLSRNIYSADYYK--  187 (288)
T ss_pred             cccccccccccccCHHHHHHHHHHHHHHHHHHHhCCeecccccHhheEecCC-----CceEECccccceecccCcccc--
Confidence                      247888999999999999999999999999999999999887     789999999987653321111  


Q ss_pred             cccccccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHH
Q psy4039         405 SADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEV  480 (588)
Q Consensus       405 ~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~  480 (588)
                       ......+++.|+|||.+.+..      ++.++|||||||++|||++ |..||.+......   .........+..++.+
T Consensus       188 -~~~~~~~~~~y~aPE~~~~~~------~~~~~Dv~slG~il~el~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (288)
T cd05050         188 -ASENDAIPIRWMPPESIFYNR------YTTESDVWAYGVVLWEIFSYGMQPYYGMAHEEVIYYVRDGNVLSCPDNCPLE  260 (288)
T ss_pred             -ccCCCccChhhcCHHHHhcCC------CCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCCHH
Confidence             011233567899999987654      4578999999999999997 8889865322111   1112222345678899


Q ss_pred             HHHHHHHhhhhCCCCCCCHHHHHHHHh
Q psy4039         481 MRRLVAKLLENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       481 l~~Li~~~L~~dP~~Rps~~e~l~~L~  507 (588)
                      +.+++.+||+.||++|||+.|+++.|+
T Consensus       261 l~~li~~~l~~~p~~Rpt~~el~~~l~  287 (288)
T cd05050         261 LYNLMRLCWSKLPSDRPSFASINRILQ  287 (288)
T ss_pred             HHHHHHHHcccCcccCCCHHHHHHHhh
Confidence            999999999999999999999998775

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=100.00  E-value=6.8e-37  Score=306.66  Aligned_cols=251  Identities=23%  Similarity=0.284  Sum_probs=199.6

Q ss_pred             CeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCce
Q psy4039         197 DIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNV  274 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNI  274 (588)
                      +|+..+.||+|+||.||+|...  +..||+|.+...........            ..+.+.+|+.+++.+    +||||
T Consensus         1 ~~~~~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~------------~~~~~~~e~~~l~~~----~h~~i   64 (258)
T cd06632           1 RWRKGELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQE------------AVKQLEQEIALLSKL----QHPNI   64 (258)
T ss_pred             CccccceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchH------------HHHHHHHHHHHHHhc----CCCCc
Confidence            3677789999999999999986  78999999854322211111            123456688888887    99999


Q ss_pred             EEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         275 VVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       275 V~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      +++++++.+..                            .++++|||+ +++|.+++.... .+++..+..++.|+++||
T Consensus        65 ~~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~i~~~l  115 (258)
T cd06632          65 VQYLGTEREED----------------------------NLYIFLELVPGGSLAKLLKKYG-SFPEPVIRLYTRQILLGL  115 (258)
T ss_pred             hheeeeEecCC----------------------------eEEEEEEecCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHH
Confidence            99999887531                            489999999 579999998764 689999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN  433 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~  433 (588)
                      .|||+.||+|+||||+||+++.+     +.+||+|||++........      .....|++.|+|||.+.... .    .
T Consensus       116 ~~lH~~~i~H~dl~~~ni~~~~~-----~~~kl~d~~~~~~~~~~~~------~~~~~~~~~y~~pe~~~~~~-~----~  179 (258)
T cd06632         116 EYLHDRNTVHRDIKGANILVDTN-----GVVKLADFGMAKQVVEFSF------AKSFKGSPYWMAPEVIAQQG-G----Y  179 (258)
T ss_pred             HHHHHCCcccCCCCHHHEEECCC-----CCEEEccCccceecccccc------ccccCCCcceeCHHHhcCCC-C----C
Confidence            99999999999999999999987     7999999999877544221      12456899999999986543 1    3


Q ss_pred             CCcCchhhHHHHHHHHhcCCCCCcccccccc----ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhh
Q psy4039         434 YSKSDAWTAGTVAYEIFGHDNPFYQSARNTD----YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLY  509 (588)
Q Consensus       434 ~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~----~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~  509 (588)
                      +.++|+|||||++|+|++|..||........    ......+.++..+++++++++.+||+.+|++||++++++.     
T Consensus       180 ~~~~D~~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~-----  254 (258)
T cd06632         180 GLAADIWSLGCTVLEMATGKPPWSQLEGVAAVFKIGRSKELPPIPDHLSDEAKDFILKCLQRDPSLRPTAAELLE-----  254 (258)
T ss_pred             CchhhhHHHHHHHHHHHhCCCCcccCcHHHHHHHHHhcccCCCcCCCcCHHHHHHHHHHhhcCcccCcCHHHHhc-----
Confidence            4679999999999999999999966421111    1112344566778999999999999999999999999999     


Q ss_pred             hhcCCccc
Q psy4039         510 LWAPKHWL  517 (588)
Q Consensus       510 ~~~~h~w~  517 (588)
                          |||+
T Consensus       255 ----~~~~  258 (258)
T cd06632         255 ----HPFV  258 (258)
T ss_pred             ----CCCC
Confidence                9996

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=100.00  E-value=4e-37  Score=313.33  Aligned_cols=250  Identities=21%  Similarity=0.255  Sum_probs=200.9

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ..|+..+.||.|+||.||+|.+.  +..||||.+......                .....+.+|+.+++.+    .|||
T Consensus         4 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~----------------~~~~~~~~e~~~l~~l----~h~~   63 (277)
T cd06640           4 ELFTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAE----------------DEIEDIQQEITVLSQC----DSPY   63 (277)
T ss_pred             HhhhhhhhcccCCCeEEEEEEEccCCEEEEEEEEeccccH----------------HHHHHHHHHHHHHHhC----CCCC
Confidence            45777889999999999999986  789999998532110                0123456788888887    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++++.+..                            ..++||||+ +++|.+++...  .+++.++..++.|++.|
T Consensus        64 i~~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~i~~~--~l~~~~~~~~~~~l~~~  113 (277)
T cd06640          64 VTKYYGSYLKGT----------------------------KLWIIMEYLGGGSALDLLRAG--PFDEFQIATMLKEILKG  113 (277)
T ss_pred             EeeEEEEEEECC----------------------------EEEEEEecCCCCcHHHHHhcC--CCCHHHHHHHHHHHHHH
Confidence            999999987632                            499999999 67999998754  79999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||+.+++|+||+|+||+++.+     +.++|+|||++........     ......|+..|+|||++.+..      
T Consensus       114 l~~lh~~~ivH~dl~p~Nil~~~~-----~~~~l~dfg~~~~~~~~~~-----~~~~~~~~~~y~apE~~~~~~------  177 (277)
T cd06640         114 LDYLHSEKKIHRDIKAANVLLSEQ-----GDVKLADFGVAGQLTDTQI-----KRNTFVGTPFWMAPEVIQQSA------  177 (277)
T ss_pred             HHHHHhCCccCcCCChhhEEEcCC-----CCEEEcccccceeccCCcc-----ccccccCcccccCHhHhccCC------
Confidence            999999999999999999999987     7899999999976543221     111346888999999987654      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCccccccccc---cccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhh
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY---EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLY  509 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~---~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~  509 (588)
                      .+.++|||||||++|||++|..||.........   .....+.++..++..+.+++.+||+.+|++||++++++.     
T Consensus       178 ~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~-----  252 (277)
T cd06640         178 YDSKADIWSLGITAIELAKGEPPNSDMHPMRVLFLIPKNNPPTLTGEFSKPFKEFIDACLNKDPSFRPTAKELLK-----  252 (277)
T ss_pred             CccHHHHHHHHHHHHHHHHCCCCCCCcChHhHhhhhhcCCCCCCchhhhHHHHHHHHHHcccCcccCcCHHHHHh-----
Confidence            457899999999999999999999764322111   112234455678889999999999999999999999999     


Q ss_pred             hhcCCccccCC
Q psy4039         510 LWAPKHWLYGA  520 (588)
Q Consensus       510 ~~~~h~w~~~~  520 (588)
                          |+|+...
T Consensus       253 ----~~~~~~~  259 (277)
T cd06640         253 ----HKFIVKN  259 (277)
T ss_pred             ----ChHhhhc
Confidence                9998633

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=4.8e-37  Score=308.87  Aligned_cols=244  Identities=23%  Similarity=0.273  Sum_probs=190.6

Q ss_pred             eeecccCceeEEEEEEC-----CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEE
Q psy4039         202 KFIAKGTNAVVYEATFR-----GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVV  276 (588)
Q Consensus       202 ~~IG~G~fG~Vy~a~~~-----g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~  276 (588)
                      +.||+|+||.||+|.+.     +..||+|.+......                ...+.+.+|+.+++.+    .|||||+
T Consensus         1 ~~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~----------------~~~~~~~~e~~~l~~l----~h~~iv~   60 (257)
T cd05060           1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIA----------------AGKKEFLREASVMAQL----DHPCIVR   60 (257)
T ss_pred             CccCccCceeEEEeEeeccCCCcceEEEEecccccch----------------HHHHHHHHHHHHHHhc----CCCCeee
Confidence            46999999999999875     268999998532211                0223456688888887    8999999


Q ss_pred             EeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q psy4039         277 MHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTH  355 (588)
Q Consensus       277 l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~y  355 (588)
                      +++++...                             ..+++|||+ +|+|.+++.... .+++..+..++.|++.||.|
T Consensus        61 ~~~~~~~~-----------------------------~~~~v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~  110 (257)
T cd05060          61 LIGVCKGE-----------------------------PLMLVMELAPLGPLLKYLKKRR-EIPVSDLKELAHQVAMGMAY  110 (257)
T ss_pred             EEEEEcCC-----------------------------ceEEEEEeCCCCcHHHHHHhCC-CCCHHHHHHHHHHHHHHHHH
Confidence            99886532                             279999999 579999998764 79999999999999999999


Q ss_pred             HHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCC
Q psy4039         356 LNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS  435 (588)
Q Consensus       356 LH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~  435 (588)
                      ||+++++||||||+|||++.+     +.+||+|||+++......... .. .....++..|+|||.+.+..      .+.
T Consensus       111 lh~~~i~H~di~p~nili~~~-----~~~kl~df~~~~~~~~~~~~~-~~-~~~~~~~~~y~aPE~~~~~~------~~~  177 (257)
T cd05060         111 LESKHFVHRDLAARNVLLVNR-----HQAKISDFGMSRALGAGSDYY-RA-TTAGRWPLKWYAPECINYGK------FSS  177 (257)
T ss_pred             HhhcCeeccCcccceEEEcCC-----CcEEeccccccceeecCCccc-cc-ccCccccccccCHHHhcCCC------CCc
Confidence            999999999999999999987     789999999998764432211 11 11222456899999986554      457


Q ss_pred             cCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhh
Q psy4039         436 KSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQL  508 (588)
Q Consensus       436 ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~  508 (588)
                      ++|||||||++|||++ |..||........   .........+..++..+++++.+||..||++||++.++++.|+.
T Consensus       178 ~~Di~slG~~l~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~~l~~~l~~  254 (257)
T cd05060         178 KSDVWSYGVTLWEAFSYGAKPYGEMKGAEVIAMLESGERLPRPEECPQEIYSIMLSCWKYRPEDRPTFSELESTFRR  254 (257)
T ss_pred             cchHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHh
Confidence            8999999999999998 9999965322111   11122234556788999999999999999999999999997764

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=100.00  E-value=3e-37  Score=317.58  Aligned_cols=264  Identities=24%  Similarity=0.275  Sum_probs=200.4

Q ss_pred             ccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCC
Q psy4039         194 KVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPH  271 (588)
Q Consensus       194 ~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~H  271 (588)
                      ..++|++.+.||+|+||.||+|.+.  ++.||||.+.......               .....+.+|+.+++.+    +|
T Consensus         5 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~---------------~~~~~~~~e~~~~~~l----~h   65 (302)
T cd07864           5 CVDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKE---------------GFPITAIREIKILRQL----NH   65 (302)
T ss_pred             hhhhhheeeeecccCCEEEEEEEECCCCcEEEEEEEeeccccc---------------CchHHHHHHHHHHHhC----CC
Confidence            3488999999999999999999996  7899999985422110               0123345688888887    89


Q ss_pred             CceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4039         272 PNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLE  351 (588)
Q Consensus       272 pNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~  351 (588)
                      |||+++++++.+.....     -             -...+..++++|||++++|.+++......+++.++..++.|++.
T Consensus        66 ~~i~~~~~~~~~~~~~~-----~-------------~~~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~i~~qi~~  127 (302)
T cd07864          66 RNIVNLKEIVTDKQDAL-----D-------------FKKDKGAFYLVFEYMDHDLMGLLESGLVHFSEDHIKSFMKQLLE  127 (302)
T ss_pred             CCeeeeeheecCcchhh-----h-------------ccccCCcEEEEEcccCccHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence            99999999987642100     0             00112359999999988888888765557999999999999999


Q ss_pred             HHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccC
Q psy4039         352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF  431 (588)
Q Consensus       352 gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~  431 (588)
                      ||.|||+.||+||||||+||+++++     +.+||+|||++..........+.    ...++..|+|||.+.+...    
T Consensus       128 aL~~LH~~~i~H~dl~p~nili~~~-----~~~kl~dfg~~~~~~~~~~~~~~----~~~~~~~y~~PE~~~~~~~----  194 (302)
T cd07864         128 GLNYCHKKNFLHRDIKCSNILLNNK-----GQIKLADFGLARLYNSEESRPYT----NKVITLWYRPPELLLGEER----  194 (302)
T ss_pred             HHHHHHhCCeecCCCCHHHEEECCC-----CcEEeCcccccccccCCcccccc----cceeccCccChHHhcCCCC----
Confidence            9999999999999999999999987     89999999999876443221111    2346789999998864321    


Q ss_pred             CCCCcCchhhHHHHHHHHhcCCCCCccccccccc----------ccccc----------------------CCCCCCccH
Q psy4039         432 VNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY----------EVNAL----------------------PQLNTNVPE  479 (588)
Q Consensus       432 ~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~----------~~~~~----------------------~~~~~~~~~  479 (588)
                       .+.++|||||||++|||++|++||.........          ....+                      ......+|.
T Consensus       195 -~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (302)
T cd07864         195 -YGPAIDVWSCGCILGELFTKKPIFQANQELAQLELISRLCGSPCPAVWPDVIKLPYFNTMKPKKQYRRRLREEFSFIPT  273 (302)
T ss_pred             -CCchhHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChhhcccccccccccccccccccccchhhhcCCCCH
Confidence             346899999999999999999999653110000          00000                      011235689


Q ss_pred             HHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccc
Q psy4039         480 VMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWL  517 (588)
Q Consensus       480 ~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~  517 (588)
                      .+.+++.+||+.||.+||++++++.         |||+
T Consensus       274 ~~~~li~~~l~~~P~~Rp~~~~il~---------~~~~  302 (302)
T cd07864         274 PALDLLDHMLTLDPSKRCTAEEALN---------SPWL  302 (302)
T ss_pred             HHHHHHHHHccCChhhCCCHHHHhc---------CCCC
Confidence            9999999999999999999999999         9996

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=100.00  E-value=6.5e-37  Score=312.50  Aligned_cols=248  Identities=23%  Similarity=0.315  Sum_probs=189.6

Q ss_pred             eecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEEeee
Q psy4039         203 FIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFA  280 (588)
Q Consensus       203 ~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l~~~  280 (588)
                      .||+|+||.||+|.+.  ++.||||.+..........              ...+..|..+++.+ +...||||++++++
T Consensus         1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~--------------~~~~~~~~~~~~~~-~~~~~~~i~~~~~~   65 (278)
T cd05606           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQG--------------ETLALNERIMLSLV-STGDCPFIVCMSYA   65 (278)
T ss_pred             CcccCCCeEEEEEEEecCCCEEEEEEeeccccccchh--------------HHHHHHHHHHHHHH-HhCCCCcEeeeeee
Confidence            4899999999999875  7899999986432221110              01122233333222 11379999999988


Q ss_pred             eeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC
Q psy4039         281 FTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMH  359 (588)
Q Consensus       281 ~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yLH~~  359 (588)
                      +.+..                            ..++||||+ +++|.+++.... .+++..+..++.|+++||.|||+.
T Consensus        66 ~~~~~----------------------------~~~~v~e~~~g~~L~~~l~~~~-~l~~~~~~~~~~ql~~~l~~lH~~  116 (278)
T cd05606          66 FHTPD----------------------------KLSFILDLMNGGDLHYHLSQHG-VFSEAEMRFYAAEIILGLEHMHNR  116 (278)
T ss_pred             eecCC----------------------------EEEEEEecCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHC
Confidence            87632                            489999999 689999887654 799999999999999999999999


Q ss_pred             CceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCCcCch
Q psy4039         360 RTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDA  439 (588)
Q Consensus       360 ~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDV  439 (588)
                      +|+||||||+||+++.+     +.++|+|||++........       ....||..|+|||++.+...     ++.++||
T Consensus       117 ~i~H~di~p~nili~~~-----~~~kl~dfg~~~~~~~~~~-------~~~~~~~~y~aPE~~~~~~~-----~~~~~Di  179 (278)
T cd05606         117 FVVYRDLKPANILLDEH-----GHVRISDLGLACDFSKKKP-------HASVGTHGYMAPEVLQKGVA-----YDSSADW  179 (278)
T ss_pred             CEEcCCCCHHHEEECCC-----CCEEEccCcCccccCccCC-------cCcCCCcCCcCcHHhcCCCC-----CCcccch
Confidence            99999999999999987     7899999999875533211       13468999999999864321     4567999


Q ss_pred             hhHHHHHHHHhcCCCCCcccccccc-----ccccccCCCCCCccHHHHHHHHHhhhhCCCCCC-----CHHHHHHHHhhh
Q psy4039         440 WTAGTVAYEIFGHDNPFYQSARNTD-----YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRP-----SAELAATVCQLY  509 (588)
Q Consensus       440 wS~Gvil~ElltG~~Pf~~~~~~~~-----~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rp-----s~~e~l~~L~~~  509 (588)
                      ||+||++|||++|+.||........     ......+.++..++.++.+++.+||..||.+||     ++.++++     
T Consensus       180 ~s~G~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~l~~~p~~R~~~~~~~~~~ll~-----  254 (278)
T cd05606         180 FSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKE-----  254 (278)
T ss_pred             HhHHHHHHHHHhCCCCCCCCCccchHHHHHHhhccCCCCCCcCCHHHHHHHHHHhhcCHHhccCCCCCCHHHHHh-----
Confidence            9999999999999999976421111     111223455667899999999999999999999     9999988     


Q ss_pred             hhcCCccccCC
Q psy4039         510 LWAPKHWLYGA  520 (588)
Q Consensus       510 ~~~~h~w~~~~  520 (588)
                          |||++..
T Consensus       255 ----~~~~~~~  261 (278)
T cd05606         255 ----HPFFRSL  261 (278)
T ss_pred             ----CccccCC
Confidence                9999753

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=100.00  E-value=4.1e-37  Score=322.41  Aligned_cols=261  Identities=22%  Similarity=0.262  Sum_probs=201.5

Q ss_pred             CccccccCCeEEeeeecccCceeEEEEEEC---------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHH
Q psy4039         189 DVDDVKVDDIQIGKFIAKGTNAVVYEATFR---------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNED  259 (588)
Q Consensus       189 ~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~---------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei  259 (588)
                      ..|++...+|++++.||+|+||.||+|.+.         +..||+|.+....   ..             .....+.+|+
T Consensus         5 ~~~~~~~~~~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~---~~-------------~~~~~~~~E~   68 (334)
T cd05100           5 PKWELSRTRLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDA---TD-------------KDLSDLVSEM   68 (334)
T ss_pred             cccccCHhHeeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEccccc---CH-------------HHHHHHHHHH
Confidence            456777788999999999999999999863         2369999874211   00             0123455688


Q ss_pred             HHHhhhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc----
Q psy4039         260 MLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC----  334 (588)
Q Consensus       260 ~il~~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~----  334 (588)
                      .+++++   .+||||++++++|.+..                            .++++|||+ +|+|.+++....    
T Consensus        69 ~~l~~l---~~h~~iv~~~~~~~~~~----------------------------~~~lv~e~~~~g~L~~~l~~~~~~~~  117 (334)
T cd05100          69 EMMKMI---GKHKNIINLLGACTQDG----------------------------PLYVLVEYASKGNLREYLRARRPPGM  117 (334)
T ss_pred             HHHHhh---cCCCCeeeeeEEEccCC----------------------------ceEEEEecCCCCcHHHHHHhcCCccc
Confidence            888776   47999999999987632                            389999999 679999997531    


Q ss_pred             -----------CCCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCcccc
Q psy4039         335 -----------AQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQY  403 (588)
Q Consensus       335 -----------~~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~  403 (588)
                                 ..+++.++..++.|+++||.|||++||+||||||+|||++.+     +.+||+|||+++......... 
T Consensus       118 ~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~givH~dlkp~Nill~~~-----~~~kL~Dfg~~~~~~~~~~~~-  191 (334)
T cd05100         118 DYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLASQKCIHRDLAARNVLVTED-----NVMKIADFGLARDVHNIDYYK-  191 (334)
T ss_pred             ccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCCeeccccccceEEEcCC-----CcEEECCcccceecccccccc-
Confidence                       247889999999999999999999999999999999999887     789999999998754421111 


Q ss_pred             ccccccccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCccccccccc---cccccCCCCCCccH
Q psy4039         404 SSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTDY---EVNALPQLNTNVPE  479 (588)
Q Consensus       404 ~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~~---~~~~~~~~~~~~~~  479 (588)
                        ......++..|+|||++.+..      ++.++|||||||++|||++ |..||.+.......   .....+..+..++.
T Consensus       192 --~~~~~~~~~~y~aPE~~~~~~------~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (334)
T cd05100         192 --KTTNGRLPVKWMAPEALFDRV------YTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPANCTH  263 (334)
T ss_pred             --cccCCCcCceEcCHHHhccCC------cCchhhhHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCH
Confidence              111233567899999987654      4578999999999999998 88998764222111   11223345567889


Q ss_pred             HHHHHHHHhhhhCCCCCCCHHHHHHHHhhhh
Q psy4039         480 VMRRLVAKLLENDPSDRPSAELAATVCQLYL  510 (588)
Q Consensus       480 ~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~  510 (588)
                      ++.+++.+||+.+|++|||+.++++.|+...
T Consensus       264 ~l~~li~~cl~~~p~~Rps~~ell~~l~~~~  294 (334)
T cd05100         264 ELYMIMRECWHAVPSQRPTFKQLVEDLDRVL  294 (334)
T ss_pred             HHHHHHHHHcccChhhCcCHHHHHHHHHHHh
Confidence            9999999999999999999999999887654

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=100.00  E-value=4.5e-37  Score=313.03  Aligned_cols=256  Identities=19%  Similarity=0.223  Sum_probs=198.5

Q ss_pred             cccCCeEEeeeecccCceeEEEEEEC------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhc
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFR------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVE  266 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~  266 (588)
                      +..++|++.+.||+|+||.||+|.+.      +..||+|++....   +.             .....+.+|+.+++.+ 
T Consensus         3 ~~~~~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~---~~-------------~~~~~~~~e~~~l~~l-   65 (280)
T cd05043           3 ISRDRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHA---SE-------------IQVTLLLQESCLLYGL-   65 (280)
T ss_pred             cchhheEEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCCC---CH-------------HHHHHHHHHHHHHHhC-
Confidence            34488999999999999999999986      3789999874211   00             0123455688888887 


Q ss_pred             CCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc-------CCCC
Q psy4039         267 NLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC-------AQLS  338 (588)
Q Consensus       267 ~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~-------~~l~  338 (588)
                         +||||+++++++.+..                           ...++++||+ +++|.+++....       ..++
T Consensus        66 ---~h~ni~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~  115 (280)
T cd05043          66 ---SHQNILPILHVCIEDG---------------------------EPPFVLYPYMNWGNLKLFLQQCRLGEANNPQALS  115 (280)
T ss_pred             ---CCCCCCeEEEEEecCC---------------------------CCCEEEEEcCCCCcHHHHHHhccccccccccCCC
Confidence               9999999999876521                           1378999998 589999997642       3589


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccc
Q psy4039         339 MHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMA  418 (588)
Q Consensus       339 ~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~A  418 (588)
                      +.+++.++.|++.||+|||+++++||||||+||+++++     +.+||+|||+++..........   .....++..|+|
T Consensus       116 ~~~~~~i~~~i~~~l~~LH~~~i~H~di~p~nil~~~~-----~~~kl~d~g~~~~~~~~~~~~~---~~~~~~~~~y~a  187 (280)
T cd05043         116 TQQLVHMAIQIACGMSYLHKRGVIHKDIAARNCVIDEE-----LQVKITDNALSRDLFPMDYHCL---GDNENRPVKWMA  187 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCEeecccCHhhEEEcCC-----CcEEECCCCCcccccCCceEEe---CCCCCcchhccC
Confidence            99999999999999999999999999999999999987     7999999999986543211100   112346778999


Q ss_pred             hhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCccccccccc---cccccCCCCCCccHHHHHHHHHhhhhCCC
Q psy4039         419 PEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTDY---EVNALPQLNTNVPEVMRRLVAKLLENDPS  494 (588)
Q Consensus       419 PE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~~---~~~~~~~~~~~~~~~l~~Li~~~L~~dP~  494 (588)
                      ||++.+..      .+.++|||||||++||+++ |+.||.........   ........+..+|+++.+++.+||..||+
T Consensus       188 pE~~~~~~------~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~  261 (280)
T cd05043         188 LESLVNKE------YSSASDVWSFGVLLWELMTLGQTPYVEIDPFEMAAYLKDGYRLAQPINCPDELFAVMACCWALDPE  261 (280)
T ss_pred             HHHHhcCC------CCchhhHHHhHHHHHHHhcCCCCCcCcCCHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHcCCChh
Confidence            99987654      4578999999999999998 99999763221111   11122234456789999999999999999


Q ss_pred             CCCCHHHHHHHHhhh
Q psy4039         495 DRPSAELAATVCQLY  509 (588)
Q Consensus       495 ~Rps~~e~l~~L~~~  509 (588)
                      +|||+.++++.|+.+
T Consensus       262 ~Rps~~~~~~~l~~~  276 (280)
T cd05043         262 ERPSFSQLVQCLTDF  276 (280)
T ss_pred             hCCCHHHHHHHHHHH
Confidence            999999999987754

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=5.9e-37  Score=312.22  Aligned_cols=256  Identities=21%  Similarity=0.242  Sum_probs=200.5

Q ss_pred             cccCCeEEeeeecccCceeEEEEEEC--C----eeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhc
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFR--G----VEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVE  266 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~--g----~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~  266 (588)
                      +..++|++.+.||+|+||+||+|.++  +    ..||+|.+.....                ......+.+|+.+++.+ 
T Consensus         4 ~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~----------------~~~~~~~~~e~~~l~~l-   66 (279)
T cd05057           4 LKETELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETS----------------PKANKEILDEAYVMASV-   66 (279)
T ss_pred             cCHHHcEEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCC----------------HHHHHHHHHHHHHHHhC-
Confidence            34478999999999999999999975  2    3699998743211                01223456788898887 


Q ss_pred             CCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHH
Q psy4039         267 NLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLL  345 (588)
Q Consensus       267 ~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i  345 (588)
                         +||||+++++++...                             ..+++|||+ +|+|.+++......+++..+..+
T Consensus        67 ---~h~~i~~~~~~~~~~-----------------------------~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~  114 (279)
T cd05057          67 ---DHPHVVRLLGICLSS-----------------------------QVQLITQLMPLGCLLDYVRNHKDNIGSQYLLNW  114 (279)
T ss_pred             ---CCCCcceEEEEEecC-----------------------------ceEEEEecCCCCcHHHHHHhccCCCCHHHHHHH
Confidence               999999999988641                             388999999 68999999886657999999999


Q ss_pred             HHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcC
Q psy4039         346 FTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALAT  425 (588)
Q Consensus       346 ~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~  425 (588)
                      +.|++.||+|||+++|+||||||+|||++++     +.+||+|||+++........ ..  .....++..|+|||.+...
T Consensus       115 ~~qi~~~l~~LH~~~i~H~di~p~nil~~~~-----~~~kL~dfg~~~~~~~~~~~-~~--~~~~~~~~~y~~PE~~~~~  186 (279)
T cd05057         115 CVQIAKGMSYLEEKRLVHRDLAARNVLVKTP-----QHVKITDFGLAKLLDVDEKE-YH--AEGGKVPIKWMALESILHR  186 (279)
T ss_pred             HHHHHHHHHHHHhCCEEecccCcceEEEcCC-----CeEEECCCcccccccCcccc-ee--cCCCcccccccCHHHhhcC
Confidence            9999999999999999999999999999877     78999999999876532211 11  0112246789999998654


Q ss_pred             CCCccCCCCCcCchhhHHHHHHHHhc-CCCCCccccccc---cccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHH
Q psy4039         426 PGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNT---DYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAEL  501 (588)
Q Consensus       426 ~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~---~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e  501 (588)
                      .      .+.++|||||||++||+++ |..||.......   ........+.+..++.++.+++.+||..||.+||++.+
T Consensus       187 ~------~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~Rp~~~~  260 (279)
T cd05057         187 I------YTHKSDVWSYGVTVWELMTFGAKPYEGIPAVEIPDLLEKGERLPQPPICTIDVYMVLVKCWMIDAESRPTFKE  260 (279)
T ss_pred             C------cCchhhHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHcCCChhhCCCHHH
Confidence            4      4578999999999999998 999997642211   11122223445667889999999999999999999999


Q ss_pred             HHHHHhhhhh
Q psy4039         502 AATVCQLYLW  511 (588)
Q Consensus       502 ~l~~L~~~~~  511 (588)
                      +++.+..++-
T Consensus       261 l~~~l~~~~~  270 (279)
T cd05057         261 LINEFSKMAR  270 (279)
T ss_pred             HHHHHHHHHh
Confidence            9998876643

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=100.00  E-value=2.9e-37  Score=314.74  Aligned_cols=249  Identities=25%  Similarity=0.315  Sum_probs=194.4

Q ss_pred             eEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceE
Q psy4039         198 IQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVV  275 (588)
Q Consensus       198 ~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV  275 (588)
                      |++.+.||.|++|.||+|.+.  |..||||++.......               .....+.+|+.+++.+    +||||+
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~---------------~~~~~~~~E~~~l~~l----~~~~iv   61 (283)
T cd07835           1 YQKVEKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDE---------------GVPSTAIREISLLKEL----NHPNIV   61 (283)
T ss_pred             CchheEecCCCCeEEEEEEEcCCCCEEEEEEeecccccc---------------cchhHHHHHHHHHHhc----CCCCcc
Confidence            567889999999999999986  8999999985322110               0123456689999887    899999


Q ss_pred             EEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhc-CCCCHHHHHHHHHHHHHHHH
Q psy4039         276 VMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERC-AQLSMHERVLLFTQLLEGVT  354 (588)
Q Consensus       276 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~-~~l~~~~~~~i~~ql~~gL~  354 (588)
                      ++++++.+.                            ...+++|||++++|.+++.... ..+++..+..++.|+++||.
T Consensus        62 ~~~~~~~~~----------------------------~~~~iv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~L~  113 (283)
T cd07835          62 RLLDVVHSE----------------------------NKLYLVFEFLDLDLKKYMDSSPLTGLDPPLIKSYLYQLLQGIA  113 (283)
T ss_pred             CHhheeccC----------------------------CeEEEEEeccCcCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHH
Confidence            999998763                            1489999999889999997653 36899999999999999999


Q ss_pred             HHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCC
Q psy4039         355 HLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY  434 (588)
Q Consensus       355 yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~  434 (588)
                      |||+++++||||+|+||+++.+     +.++|+|||+++........     .....+++.|+|||++.+...     ++
T Consensus       114 ~lH~~~~~H~dl~p~nil~~~~-----~~~~l~df~~~~~~~~~~~~-----~~~~~~~~~~~aPE~~~~~~~-----~~  178 (283)
T cd07835         114 YCHSHRVLHRDLKPQNLLIDRE-----GALKLADFGLARAFGVPVRT-----YTHEVVTLWYRAPEILLGSRQ-----YS  178 (283)
T ss_pred             HHHHCCeeCCCCCHHHEEEcCC-----CcEEEeecccccccCCCccc-----cCccccccCCCCCceeecCcc-----cC
Confidence            9999999999999999999987     78999999999765432111     112356889999998765321     34


Q ss_pred             CcCchhhHHHHHHHHhcCCCCCcccccccc------------------------c-------cccccCCCCCCccHHHHH
Q psy4039         435 SKSDAWTAGTVAYEIFGHDNPFYQSARNTD------------------------Y-------EVNALPQLNTNVPEVMRR  483 (588)
Q Consensus       435 ~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~------------------------~-------~~~~~~~~~~~~~~~l~~  483 (588)
                      .++|||||||++|||++|.+||........                        +       ...........++.++.+
T Consensus       179 ~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (283)
T cd07835         179 TPVDIWSIGCIFAEMVNRRPLFPGDSEIDQLFRIFRTLGTPDEDVWPGVTSLPDYKPTFPKWARQDLSKVVPNLDEDGLD  258 (283)
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHHhhhhhhchhhhhhcccccccchhhhcCCCCHHHHH
Confidence            679999999999999999999965321000                        0       000011123457789999


Q ss_pred             HHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccc
Q psy4039         484 LVAKLLENDPSDRPSAELAATVCQLYLWAPKHWL  517 (588)
Q Consensus       484 Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~  517 (588)
                      ++.+||+.||.+|||++++++         |||+
T Consensus       259 li~~~l~~~P~~Rpt~~~il~---------~~~~  283 (283)
T cd07835         259 LLSKMLVYDPAKRISAKAALQ---------HPYF  283 (283)
T ss_pred             HHHHHhcCChhhCcCHHHHhc---------CCCC
Confidence            999999999999999999999         9996

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=1.7e-36  Score=310.46  Aligned_cols=254  Identities=24%  Similarity=0.321  Sum_probs=197.9

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|+..+.||.|++|.||+|.+.  ++.||+|.+......                .....+.+|+++++.+    +|||
T Consensus         1 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~----------------~~~~~~~~e~~~l~~l----~h~~   60 (287)
T cd06621           1 EKIVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNP----------------DLQKQILRELEINKSC----KSPY   60 (287)
T ss_pred             CceEEEEEeccCCceEEEEEEECCCCeEEEEEEEecCCch----------------HHHHHHHHHHHHHHhC----CCCC
Confidence            47899999999999999999996  789999998532111                0223456788888887    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHH---hcCCCCHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRE---RCAQLSMHERVLLFTQL  349 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~---~~~~l~~~~~~~i~~ql  349 (588)
                      |++++++|.+..                          ...+++||||+ +++|.+++..   ....+++..+..++.|+
T Consensus        61 iv~~~~~~~~~~--------------------------~~~~~lv~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i  114 (287)
T cd06621          61 IVKYYGAFLDES--------------------------SSSIGIAMEYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESV  114 (287)
T ss_pred             eeeeeeEEEccC--------------------------CCeEEEEEEecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            999999987532                          22489999999 5799988764   23468999999999999


Q ss_pred             HHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCc
Q psy4039         350 LEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF  429 (588)
Q Consensus       350 ~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~  429 (588)
                      +.||.|||+.+++|+||+|+||+++.+     +.++|+|||++........       ....++..|+|||.+.+..   
T Consensus       115 ~~~L~~lH~~~i~H~dl~~~nil~~~~-----~~~~l~dfg~~~~~~~~~~-------~~~~~~~~y~~pE~~~~~~---  179 (287)
T cd06621         115 LKGLSYLHSRKIIHRDIKPSNILLTRK-----GQVKLCDFGVSGELVNSLA-------GTFTGTSFYMAPERIQGKP---  179 (287)
T ss_pred             HHHHHHHHHCCcccCCCCHHHEEEecC-----CeEEEeecccccccccccc-------ccccCCccccCHHHhcCCC---
Confidence            999999999999999999999999887     7899999999865433211       1345788999999987654   


Q ss_pred             cCCCCCcCchhhHHHHHHHHhcCCCCCccccc----ccc---cc-ccccCCCC------CCccHHHHHHHHHhhhhCCCC
Q psy4039         430 SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSAR----NTD---YE-VNALPQLN------TNVPEVMRRLVAKLLENDPSD  495 (588)
Q Consensus       430 ~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~----~~~---~~-~~~~~~~~------~~~~~~l~~Li~~~L~~dP~~  495 (588)
                         ++.++||||+||++|||++|..||.....    ...   .. ....+.++      ..+++.+.+++.+||+.||++
T Consensus       180 ---~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~  256 (287)
T cd06621         180 ---YSITSDVWSLGLTLLEVAQNRFPFPPEGEPPLGPIELLSYIVNMPNPELKDEPGNGIKWSEEFKDFIKQCLEKDPTR  256 (287)
T ss_pred             ---CCchhhHHHHHHHHHHHHhCCCCCCcccCCCCChHHHHHHHhcCCchhhccCCCCCCchHHHHHHHHHHHcCCCccc
Confidence               45689999999999999999999976411    000   00 00111111      235678999999999999999


Q ss_pred             CCCHHHHHHHHhhhhhcCCccccCCCC
Q psy4039         496 RPSAELAATVCQLYLWAPKHWLYGATP  522 (588)
Q Consensus       496 Rps~~e~l~~L~~~~~~~h~w~~~~~~  522 (588)
                      |||+.+++.         |||++....
T Consensus       257 Rpt~~eil~---------~~~~~~~~~  274 (287)
T cd06621         257 RPTPWDMLE---------HPWIKAQMK  274 (287)
T ss_pred             CCCHHHHHh---------Ccccccccc
Confidence            999999999         999974433

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=100.00  E-value=5.5e-37  Score=315.54  Aligned_cols=252  Identities=20%  Similarity=0.233  Sum_probs=193.0

Q ss_pred             ccCCeEEeeeecccCceeEEEEEEC------------------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchh
Q psy4039         194 KVDDIQIGKFIAKGTNAVVYEATFR------------------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLR  255 (588)
Q Consensus       194 ~~~~~~~~~~IG~G~fG~Vy~a~~~------------------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~  255 (588)
                      ..++|++.+.||+|+||.||++.+.                  +..||||++.....                ......+
T Consensus         3 ~~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~----------------~~~~~~~   66 (296)
T cd05095           3 PRKRLTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDAN----------------KNARNDF   66 (296)
T ss_pred             ChhhceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCC----------------HHHHHHH
Confidence            3478999999999999999998643                  34689999843110                0122356


Q ss_pred             hhHHHHHhhhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc
Q psy4039         256 LNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC  334 (588)
Q Consensus       256 ~~Ei~il~~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~  334 (588)
                      .+|+.+++.+    +||||+++++++.+..                            ..+++|||+ +++|.+++....
T Consensus        67 ~~E~~~l~~l----~~~~i~~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~  114 (296)
T cd05095          67 LKEIKIMSRL----KDPNIIRLLAVCITSD----------------------------PLCMITEYMENGDLNQFLSRHE  114 (296)
T ss_pred             HHHHHHHHhC----CCCCcceEEEEEecCC----------------------------ccEEEEEeCCCCcHHHHHHhcC
Confidence            6789999887    8999999999987632                            389999999 589999997642


Q ss_pred             ----------CCCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccc
Q psy4039         335 ----------AQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYS  404 (588)
Q Consensus       335 ----------~~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~  404 (588)
                                ..+++.++..++.|++.||.|||++||+||||||+|||++.+     +.++|+|||+++.......... 
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dlkp~Nili~~~-----~~~~l~dfg~~~~~~~~~~~~~-  188 (296)
T cd05095         115 PQEAAEKADVVTISYSTLIFMATQIASGMKYLSSLNFVHRDLATRNCLVGKN-----YTIKIADFGMSRNLYSGDYYRI-  188 (296)
T ss_pred             cccccccccccccCHHHHHHHHHHHHHHHHHHHHCCeecccCChheEEEcCC-----CCEEeccCcccccccCCcceec-
Confidence                      247788999999999999999999999999999999999877     7899999999976543221111 


Q ss_pred             cccccccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc--CCCCCcccccccccc----------ccccCC
Q psy4039         405 SADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG--HDNPFYQSARNTDYE----------VNALPQ  472 (588)
Q Consensus       405 ~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt--G~~Pf~~~~~~~~~~----------~~~~~~  472 (588)
                        .....+++.|+|||+..+..      ++.++|||||||++|||++  |..||..........          .....+
T Consensus       189 --~~~~~~~~~~~~pe~~~~~~------~~~~~DiwSlG~~l~el~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (296)
T cd05095         189 --QGRAVLPIRWMSWESILLGK------FTTASDVWAFGVTLWEILTLCKEQPYSQLSDEQVIENTGEFFRDQGRQVYLP  260 (296)
T ss_pred             --cCcCcCccccCCHHHHhcCC------ccchhhhhHHHHHHHHHHHhCCCCCccccChHHHHHHHHHHHhhccccccCC
Confidence              11234567899999886654      4578999999999999998  778886532111110          011122


Q ss_pred             CCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHh
Q psy4039         473 LNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       473 ~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~  507 (588)
                      .+..+++.+.+++.+||+.||.+||+++++.+.|+
T Consensus       261 ~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~l~  295 (296)
T cd05095         261 KPALCPDSLYKLMLSCWRRNAKERPSFQEIHATLL  295 (296)
T ss_pred             CCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHHHh
Confidence            34568899999999999999999999999988765

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=6.9e-37  Score=312.75  Aligned_cols=254  Identities=20%  Similarity=0.238  Sum_probs=196.1

Q ss_pred             CCeEEeeeecccCceeEEEEEEC------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCC
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLP  269 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~  269 (588)
                      .-|++.+.||+|+||.||.|.+.      +..||+|.++.....                .....+.+|+.+++.+    
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~----------------~~~~~~~~e~~~l~~l----   63 (284)
T cd05079           4 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGG----------------NHIADLKKEIEILRNL----   63 (284)
T ss_pred             hhhhhceecCCCCceeEEEEEEccCCCCccceEEEEEcCccccH----------------HHHHHHHHHHHHHHhC----
Confidence            45788899999999999999853      778999998532110                0123456789999887    


Q ss_pred             CCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHH
Q psy4039         270 PHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQ  348 (588)
Q Consensus       270 ~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~q  348 (588)
                      .||||+++++++.+..                          ....++||||+ +++|.+++......+++.++..++.|
T Consensus        64 ~h~~i~~~~~~~~~~~--------------------------~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~i~~~  117 (284)
T cd05079          64 YHENIVKYKGICTEDG--------------------------GNGIKLIMEFLPSGSLKEYLPRNKNKINLKQQLKYAVQ  117 (284)
T ss_pred             CCCCeeeeeeEEecCC--------------------------CCceEEEEEccCCCCHHHHHHhccCCCCHHHHHHHHHH
Confidence            9999999999887631                          11389999999 68999999776547899999999999


Q ss_pred             HHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCC
Q psy4039         349 LLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGL  428 (588)
Q Consensus       349 l~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~  428 (588)
                      ++.||.|||++||+||||||+||+++.+     +.++|+|||+++........  ........|+..|+|||++.+..  
T Consensus       118 i~~aL~~lH~~gi~H~dlkp~Nil~~~~-----~~~~l~dfg~~~~~~~~~~~--~~~~~~~~~~~~y~apE~~~~~~--  188 (284)
T cd05079         118 ICKGMDYLGSRQYVHRDLAARNVLVESE-----HQVKIGDFGLTKAIETDKEY--YTVKDDLDSPVFWYAPECLIQSK--  188 (284)
T ss_pred             HHHHHHHHHHCCeeecccchheEEEcCC-----CCEEECCCccccccccCccc--eeecCCCCCCccccCHHHhccCC--
Confidence            9999999999999999999999999887     78999999999876542221  11112356788899999986554  


Q ss_pred             ccCCCCCcCchhhHHHHHHHHhcCCCCCccccccc---------c---------ccccccCCCCCCccHHHHHHHHHhhh
Q psy4039         429 FSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNT---------D---------YEVNALPQLNTNVPEVMRRLVAKLLE  490 (588)
Q Consensus       429 ~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~---------~---------~~~~~~~~~~~~~~~~l~~Li~~~L~  490 (588)
                          .+.++|||||||++|||+++..|+.......         .         .......+.+..++..+.+|+.+||+
T Consensus       189 ----~~~~~Di~slG~il~ellt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~  264 (284)
T cd05079         189 ----FYIASDVWSFGVTLYELLTYCDSESSPMTLFLKMIGPTHGQMTVTRLVRVLEEGKRLPRPPNCPEEVYQLMRKCWE  264 (284)
T ss_pred             ----CCccccchhhhhhhhhhhcCCCCCccccchhhhhcccccccccHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHcc
Confidence                4578999999999999999877654321100         0         00112223456789999999999999


Q ss_pred             hCCCCCCCHHHHHHHHhh
Q psy4039         491 NDPSDRPSAELAATVCQL  508 (588)
Q Consensus       491 ~dP~~Rps~~e~l~~L~~  508 (588)
                      .||++|||++++++.++.
T Consensus       265 ~~p~~Rpt~~~il~~l~~  282 (284)
T cd05079         265 FQPSKRTTFQNLIEGFEA  282 (284)
T ss_pred             CCcccCcCHHHHHHHHHh
Confidence            999999999999987664

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=100.00  E-value=2.8e-37  Score=319.18  Aligned_cols=259  Identities=19%  Similarity=0.221  Sum_probs=198.9

Q ss_pred             cccCCeEEeeeecccCceeEEEEEEC--Ce----eEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhc
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFR--GV----EYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVE  266 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~----~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~  266 (588)
                      +..++|+..+.||+|+||.||+|.+.  +.    .||+|.+.....   .             .....+.+|+.+++.+ 
T Consensus         4 ~~~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~---~-------------~~~~~~~~e~~~~~~l-   66 (303)
T cd05110           4 LKETELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTG---P-------------KANVEFMDEALIMASM-   66 (303)
T ss_pred             cchhhceeccccccCCCccEEEEEEecCCCcceeeEEEEeccccCC---H-------------HHHHHHHHHHHHHHhC-
Confidence            34478899999999999999999875  33    578898743111   0             0112355688888887 


Q ss_pred             CCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHH
Q psy4039         267 NLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLL  345 (588)
Q Consensus       267 ~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i  345 (588)
                         .||||+++++++...                             ..++++||+ +|+|.+++......+++..+..+
T Consensus        67 ---~h~niv~~~~~~~~~-----------------------------~~~~v~e~~~~g~l~~~~~~~~~~~~~~~~~~~  114 (303)
T cd05110          67 ---DHPHLVRLLGVCLSP-----------------------------TIQLVTQLMPHGCLLDYVHEHKDNIGSQLLLNW  114 (303)
T ss_pred             ---CCCCcccEEEEEcCC-----------------------------CceeeehhcCCCCHHHHHHhcccCCCHHHHHHH
Confidence               999999999988642                             156889999 58999999876557899999999


Q ss_pred             HHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcC
Q psy4039         346 FTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALAT  425 (588)
Q Consensus       346 ~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~  425 (588)
                      +.|++.||.|||+++|+||||||+|||++.+     +.+||+|||+++.........   ......++..|+|||++.+.
T Consensus       115 ~~qi~~~L~~LH~~~ivH~dikp~Nill~~~-----~~~kL~Dfg~~~~~~~~~~~~---~~~~~~~~~~y~~PE~~~~~  186 (303)
T cd05110         115 CVQIAKGMMYLEERRLVHRDLAARNVLVKSP-----NHVKITDFGLARLLEGDEKEY---NADGGKMPIKWMALECIHYR  186 (303)
T ss_pred             HHHHHHHHHHHhhcCeeccccccceeeecCC-----CceEEccccccccccCccccc---ccCCCccccccCCHHHhccC
Confidence            9999999999999999999999999999877     789999999998764322111   11123467799999998765


Q ss_pred             CCCccCCCCCcCchhhHHHHHHHHhc-CCCCCccccccc---cccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHH
Q psy4039         426 PGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNT---DYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAEL  501 (588)
Q Consensus       426 ~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~---~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e  501 (588)
                      .      .+.++|||||||++|||++ |..||.+.....   ..........+..++.++.+++.+||..||++||++++
T Consensus       187 ~------~~~~~DiwslG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~c~~~~p~~Rp~~~~  260 (303)
T cd05110         187 K------FTHQSDVWSYGVTIWELMTFGGKPYDGIPTREIPDLLEKGERLPQPPICTIDVYMVMVKCWMIDADSRPKFKE  260 (303)
T ss_pred             C------CChHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHH
Confidence            4      4578999999999999997 899997632111   11112223344567889999999999999999999999


Q ss_pred             HHHHHhhhhhcCC
Q psy4039         502 AATVCQLYLWAPK  514 (588)
Q Consensus       502 ~l~~L~~~~~~~h  514 (588)
                      +++.+......+.
T Consensus       261 l~~~l~~~~~~~~  273 (303)
T cd05110         261 LAAEFSRMARDPQ  273 (303)
T ss_pred             HHHHHHHHHhchh
Confidence            9998876654443

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>KOG0579|consensus

Probab=100.00  E-value=8.8e-39  Score=335.95  Aligned_cols=277  Identities=22%  Similarity=0.250  Sum_probs=209.6

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      +-+.+...||.|+||.||+|..+  +...|-|+|..   .+.  +            .-+++.-||+||..+    .||+
T Consensus        32 d~WeIiGELGDGAFGKVyKA~nket~~lAAaKvIet---kse--E------------ELEDylVEIeILa~C----dHP~   90 (1187)
T KOG0579|consen   32 DHWEIIGELGDGAFGKVYKAVNKETKLLAAAKVIET---KSE--E------------ELEDYLVEIEILAEC----DHPV   90 (1187)
T ss_pred             HHHHHHhhhcCccchhhhhhhcccchhhhhhhhhcc---cch--h------------HHhhhhhhhhhhhcC----CChH
Confidence            44667788999999999999987  44567777732   111  1            234566799999998    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      ||+|++.|.-..                            .+|++.||| +|-++..+-.-+..|++.++..+++|++.|
T Consensus        91 ivkLl~ayy~en----------------------------kLwiliEFC~GGAVDaimlEL~r~LtE~QIqvvc~q~ldA  142 (1187)
T KOG0579|consen   91 IVKLLSAYYFEN----------------------------KLWILIEFCGGGAVDAIMLELGRVLTEDQIQVVCYQVLDA  142 (1187)
T ss_pred             HHHHHHHHhccC----------------------------ceEEEEeecCCchHhHHHHHhccccchHHHHHHHHHHHHH
Confidence            999998775421                            499999999 577888877766699999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||+++|||||||+.|||++.+     |.++|+|||.+........     ....+.|||+|||||+....... ...
T Consensus       143 Ln~LHs~~iIHRDLKAGNiL~Tld-----GdirLADFGVSAKn~~t~q-----kRDsFIGTPYWMAPEVvmCET~K-D~P  211 (1187)
T KOG0579|consen  143 LNWLHSQNIIHRDLKAGNILLTLD-----GDIRLADFGVSAKNKSTRQ-----KRDSFIGTPYWMAPEVVMCETFK-DQP  211 (1187)
T ss_pred             HHHHhhcchhhhhccccceEEEec-----CcEeeecccccccchhHHh-----hhccccCCcccccchheeecccc-CCC
Confidence            999999999999999999999999     8999999998754332211     11257899999999998654321 112


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCccccccccc---cccccCCC--CCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHh
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY---EVNALPQL--NTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~---~~~~~~~~--~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~  507 (588)
                      |..++||||||++|.||.-+.+|-..-......   .....|.+  |..++..+.|++.+||..||..||+++++++   
T Consensus       212 YDykaDiWSlGITLIEMAqiEPPHhelnpMRVllKiaKSePPTLlqPS~Ws~~F~DfLk~cL~Knp~~Rp~aaqll~---  288 (1187)
T KOG0579|consen  212 YDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSEPPTLLQPSHWSRSFSDFLKRCLVKNPRNRPPAAQLLK---  288 (1187)
T ss_pred             chhhhhHHhhhhHHHHHhccCCCccccchHHHHHHHhhcCCCcccCcchhhhHHHHHHHHHHhcCCccCCCHHHHhh---
Confidence            456899999999999999999997653222211   11222222  4567889999999999999999999999999   


Q ss_pred             hhhhcCCccccCCCCChhHHHHHHHhhhccccccC
Q psy4039         508 LYLWAPKHWLYGATPSHNEIMQWLLTLTTKVLCTG  542 (588)
Q Consensus       508 ~~~~~~h~w~~~~~~~~~~~~~~l~~~~~~~~~~~  542 (588)
                            |||++..... ..+...+......|..+.
T Consensus       289 ------Hpfv~~~~Sn-K~ireLlAEakAeV~EEv  316 (1187)
T KOG0579|consen  289 ------HPFVQNAPSN-KMIRELLAEAKAEVQEEV  316 (1187)
T ss_pred             ------CcccccCCcc-hHHHHHHHHHHHHHHHHh
Confidence                  9999754433 444555554545544443

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=100.00  E-value=5.4e-37  Score=307.09  Aligned_cols=243  Identities=24%  Similarity=0.313  Sum_probs=194.7

Q ss_pred             eeecccCceeEEEEEEC-----CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEE
Q psy4039         202 KFIAKGTNAVVYEATFR-----GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVV  276 (588)
Q Consensus       202 ~~IG~G~fG~Vy~a~~~-----g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~  276 (588)
                      +.||+|+||.||+|.+.     +..||||.+.......                ....+.+|+.++..+    +|+||++
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~----------------~~~~~~~e~~~l~~~----~~~~i~~   60 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEE----------------ERKDFLKEARVMKKL----GHPNVVR   60 (262)
T ss_pred             CccccCCceEEEEEEEecCCCCCceEEeEeeccccchh----------------HHHHHHHHHHHHhhc----CCCChhe
Confidence            46999999999999997     7799999985322110                124456788888887    7999999


Q ss_pred             EeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh--------cCCCCHHHHHHHHH
Q psy4039         277 MHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER--------CAQLSMHERVLLFT  347 (588)
Q Consensus       277 l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~--------~~~l~~~~~~~i~~  347 (588)
                      +++++.+..                            ..+++|||+ +++|.+++...        ...+++.+++.++.
T Consensus        61 ~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  112 (262)
T cd00192          61 LLGVCTEEE----------------------------PLYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAI  112 (262)
T ss_pred             eeeeecCCC----------------------------ceEEEEEeccCCcHHHHHhhccccccccccccCCHHHHHHHHH
Confidence            999887621                            489999999 78999999875        35899999999999


Q ss_pred             HHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCC
Q psy4039         348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG  427 (588)
Q Consensus       348 ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~  427 (588)
                      |++.||.|||+++|+||||||+||+++.+     +.+||+|||.+..........   ......+++.|+|||.+.... 
T Consensus       113 ~l~~al~~lH~~~i~H~di~p~nili~~~-----~~~~l~dfg~~~~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~-  183 (262)
T cd00192         113 QIAKGMEYLASKKFVHRDLAARNCLVGED-----LVVKISDFGLSRDVYDDDYYR---KKTGGKLPIRWMAPESLKDGI-  183 (262)
T ss_pred             HHHHHHHHHHcCCcccCccCcceEEECCC-----CcEEEcccccccccccccccc---cccCCCcCccccCHHHhccCC-
Confidence            99999999999999999999999999988     799999999998765432111   112455788999999987653 


Q ss_pred             CccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHH
Q psy4039         428 LFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAA  503 (588)
Q Consensus       428 ~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l  503 (588)
                           .+.++||||+||++|||++ |..||........   .........+..+|+++.+++.+||..||++|||+++++
T Consensus       184 -----~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l~  258 (262)
T cd00192         184 -----FTSKSDVWSFGVLLWEIFTLGATPYPGLSNEEVLEYLRKGYRLPKPEYCPDELYELMLSCWQLDPEDRPTFSELV  258 (262)
T ss_pred             -----cchhhccHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCccCChHHHHHHHHHccCCcccCcCHHHHH
Confidence                 4578999999999999999 6999976422111   111223345677899999999999999999999999998


Q ss_pred             HHH
Q psy4039         504 TVC  506 (588)
Q Consensus       504 ~~L  506 (588)
                      +.|
T Consensus       259 ~~l  261 (262)
T cd00192         259 ERL  261 (262)
T ss_pred             Hhh
Confidence            854

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=100.00  E-value=9.9e-37  Score=308.90  Aligned_cols=249  Identities=20%  Similarity=0.216  Sum_probs=184.8

Q ss_pred             eeecccCceeEEEEEEC----CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEE
Q psy4039         202 KFIAKGTNAVVYEATFR----GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVM  277 (588)
Q Consensus       202 ~~IG~G~fG~Vy~a~~~----g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l  277 (588)
                      +.||+|+||.||+|.+.    +..+|+|.++.....                .....+.+|+.+++.+    +||||+++
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~~----------------~~~~~~~~E~~~l~~l----~h~~iv~~   60 (269)
T cd05087           1 KEIGNGWFGKVILGEVNSGYTPAQVVVKELRVSASV----------------QEQMKFLEEAQPYRSL----QHSNLLQC   60 (269)
T ss_pred             CcccccCCceEEEEEEcCCCCceEEEEEecCCCCCh----------------HHHHHHHHHHHHHHhC----CCCCEeeE
Confidence            36999999999999875    457999988532110                0112456688888887    99999999


Q ss_pred             eeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc----CCCCHHHHHHHHHHHHHH
Q psy4039         278 HFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC----AQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       278 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~----~~l~~~~~~~i~~ql~~g  352 (588)
                      ++++.+..                            ..++||||+ +|+|.+++....    ..+++..+..++.|++.|
T Consensus        61 ~~~~~~~~----------------------------~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~a  112 (269)
T cd05087          61 LGQCTEVT----------------------------PYLLVMEFCPLGDLKGYLRSCRKAELMTPDPTTLQRMACEIALG  112 (269)
T ss_pred             EEEEcCCC----------------------------CcEEEEECCCCCcHHHHHHHhhhcccccccHHHHHHHHHHHHHH
Confidence            99887632                            379999999 589999997642    246777888999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCc-cC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF-SF  431 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~-~~  431 (588)
                      |.|||+.+++||||||+||+++.+     +.+||+|||+++........   .......|++.|+|||++.+..... ..
T Consensus       113 l~~lH~~~i~H~dlkp~nil~~~~-----~~~kL~dfg~~~~~~~~~~~---~~~~~~~~~~~y~aPE~~~~~~~~~~~~  184 (269)
T cd05087         113 LLHLHKNNFIHSDLALRNCLLTAD-----LTVKIGDYGLSHNKYKEDYY---VTPDQLWVPLRWIAPELVDEVHGNLLVV  184 (269)
T ss_pred             HHHHHHCCEeccccCcceEEEcCC-----CcEEECCccccccccCccee---ecCCCcCCcccccCHhHhcccccccccc
Confidence            999999999999999999999987     78999999999754332111   1111345788999999986532211 11


Q ss_pred             CCCCcCchhhHHHHHHHHhc-CCCCCccccccccc--------cccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHH
Q psy4039         432 VNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTDY--------EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA  502 (588)
Q Consensus       432 ~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~~--------~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~  502 (588)
                      ..+.++|||||||++|||++ |..||.........        .....+.+....++.+.+++.+|| .+|++|||++++
T Consensus       185 ~~~~~~DiwslG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~-~~P~~Rpt~~~l  263 (269)
T cd05087         185 DQTKESNVWSLGVTIWELFELGSQPYRHLSDEQVLTYTVREQQLKLPKPRLKLPLSDRWYEVMQFCW-LQPEQRPSAEEV  263 (269)
T ss_pred             CCCccchhHHHHHHHHHHHhCCCCCCCCCChHHHHHHHhhcccCCCCCCccCCCCChHHHHHHHHHh-cCcccCCCHHHH
Confidence            13578999999999999996 99999653211110        111122333457788999999999 689999999999


Q ss_pred             HHHHh
Q psy4039         503 ATVCQ  507 (588)
Q Consensus       503 l~~L~  507 (588)
                      ...|+
T Consensus       264 ~~~l~  268 (269)
T cd05087         264 HLLLS  268 (269)
T ss_pred             HHHhc
Confidence            87654

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=100.00  E-value=8.3e-37  Score=310.03  Aligned_cols=240  Identities=19%  Similarity=0.286  Sum_probs=188.8

Q ss_pred             CCeEEeeee--cccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCC
Q psy4039         196 DDIQIGKFI--AKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPH  271 (588)
Q Consensus       196 ~~~~~~~~I--G~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~H  271 (588)
                      ++|++.+.+  |+|+||.||++..+  +..+|+|.+......                      ..|+.+...+   .+|
T Consensus        14 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~----------------------~~e~~~~~~~---~~h   68 (267)
T PHA03390         14 KNCEIVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKAKNFN----------------------AIEPMVHQLM---KDN   68 (267)
T ss_pred             HhhccccceeecCCCceEEEEEEEcCCCcEEEEEEEehhhcc----------------------hhhHHHHHHh---hcC
Confidence            456665555  99999999999986  788999998431100                      0122222222   379


Q ss_pred             CceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy4039         272 PNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLL  350 (588)
Q Consensus       272 pNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~  350 (588)
                      |||++++++|.+..                            ..++||||+ +++|.+++.... .+++.++..++.|++
T Consensus        69 ~~iv~~~~~~~~~~----------------------------~~~iv~e~~~~~~L~~~l~~~~-~l~~~~~~~~~~qi~  119 (267)
T PHA03390         69 PNFIKLYYSVTTLK----------------------------GHVLIMDYIKDGDLFDLLKKEG-KLSEAEVKKIIRQLV  119 (267)
T ss_pred             CCEEEEEEEEecCC----------------------------eeEEEEEcCCCCcHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence            99999999987632                            499999999 689999998765 899999999999999


Q ss_pred             HHHHHHHhCCceeccCCCCcEEEcCCCCCCCC-ceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCc
Q psy4039         351 EGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP-QLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF  429 (588)
Q Consensus       351 ~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~-~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~  429 (588)
                      +||.|||+.||+||||||+||+++.+     + .++|+|||+++......         ...||+.|+|||++.+..   
T Consensus       120 ~~l~~lH~~~i~H~dl~p~nil~~~~-----~~~~~l~dfg~~~~~~~~~---------~~~~~~~y~aPE~~~~~~---  182 (267)
T PHA03390        120 EALNDLHKHNIIHNDIKLENVLYDRA-----KDRIYLCDYGLCKIIGTPS---------CYDGTLDYFSPEKIKGHN---  182 (267)
T ss_pred             HHHHHHHhCCeeeCCCCHHHEEEeCC-----CCeEEEecCccceecCCCc---------cCCCCCcccChhhhcCCC---
Confidence            99999999999999999999999987     5 89999999987654321         245889999999997654   


Q ss_pred             cCCCCCcCchhhHHHHHHHHhcCCCCCccccccc----cc--cccccCCCCCCccHHHHHHHHHhhhhCCCCCCC-HHHH
Q psy4039         430 SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNT----DY--EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS-AELA  502 (588)
Q Consensus       430 ~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~----~~--~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps-~~e~  502 (588)
                         ++.++|||||||++|||++|..||.......    ..  ........+..+++.+.++|.+||+.||.+||+ ++++
T Consensus       183 ---~~~~~DvwslG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~  259 (267)
T PHA03390        183 ---YDVSFDWWAVGVLTYELLTGKHPFKEDEDEELDLESLLKRQQKKLPFIKNVSKNANDFVQSMLKYNINYRLTNYNEI  259 (267)
T ss_pred             ---CCchhhHHHHHHHHHHHHHCCCCCCCCCcchhhHHHHHHhhcccCCcccccCHHHHHHHHHHhccChhhCCchHHHH
Confidence               4468999999999999999999997532111    01  111222344578999999999999999999996 6999


Q ss_pred             HHHHhhhhhcCCcccc
Q psy4039         503 ATVCQLYLWAPKHWLY  518 (588)
Q Consensus       503 l~~L~~~~~~~h~w~~  518 (588)
                      ++         |||++
T Consensus       260 l~---------h~~~~  266 (267)
T PHA03390        260 IK---------HPFLK  266 (267)
T ss_pred             hc---------CCccc
Confidence            98         99985

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=100.00  E-value=5.9e-37  Score=307.19  Aligned_cols=250  Identities=24%  Similarity=0.371  Sum_probs=198.3

Q ss_pred             CeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCce
Q psy4039         197 DIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNV  274 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNI  274 (588)
                      +|.+.+.||+|+||.||+|.+.  +..||+|.+......               ....+.+.+|+.+++.+    +||||
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~---------------~~~~~~~~~E~~~l~~~----~h~~i   61 (257)
T cd08225           1 RYEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMP---------------VKEKEASKKEVILLAKM----KHPNI   61 (257)
T ss_pred             CceEEEEecCCCcceEEEEEEcCCCceEEEEEeeHhhcc---------------chhhHHHHHHHHHHHhC----CCCCh
Confidence            5889999999999999999996  789999998532111               01223456789999887    89999


Q ss_pred             EEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh-cCCCCHHHHHHHHHHHHHH
Q psy4039         275 VVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER-CAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       275 V~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~-~~~l~~~~~~~i~~ql~~g  352 (588)
                      +++++.+.+..                            ..++++||+ +++|.+++... ...+++..+..++.|+++|
T Consensus        62 ~~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~  113 (257)
T cd08225          62 VTFFASFQENG----------------------------RLFIVMEYCDGGDLMKRINRQRGVLFSEDQILSWFVQISLG  113 (257)
T ss_pred             hhhhheeccCC----------------------------eEEEEEecCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHH
Confidence            99999876531                            489999999 67999999764 3358999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||+.+|+|+||||+||+++++.    ..+||+|||.+..........     ....|++.|+|||++....      
T Consensus       114 l~~lh~~~i~H~dl~~~nil~~~~~----~~~~l~d~~~~~~~~~~~~~~-----~~~~~~~~~~ape~~~~~~------  178 (257)
T cd08225         114 LKHIHDRKILHRDIKSQNIFLSKNG----MVAKLGDFGIARQLNDSMELA-----YTCVGTPYYLSPEICQNRP------  178 (257)
T ss_pred             HHHHHHCCcccccCCHHHEEEcCCC----CeEEecccccchhccCCcccc-----cccCCCccccCHHHHcCCC------
Confidence            9999999999999999999998762    357999999997754422111     1345899999999986543      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCccccccccc---cccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhh
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY---EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLY  509 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~---~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~  509 (588)
                      .+.++|||||||++|||++|..||.........   .....+.....++.+++++|.+||..+|++|||+.+++.     
T Consensus       179 ~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~ll~-----  253 (257)
T cd08225         179 YNNKTDIWSLGCVLYELCTLKHPFEGNNLHQLVLKICQGYFAPISPNFSRDLRSLISQLFKVSPRDRPSITSILK-----  253 (257)
T ss_pred             CCchhhHHHHHHHHHHHHhCCCCCCCccHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHhccChhhCcCHHHHhh-----
Confidence            457899999999999999999999753221111   112233445677899999999999999999999999999     


Q ss_pred             hhcCCccc
Q psy4039         510 LWAPKHWL  517 (588)
Q Consensus       510 ~~~~h~w~  517 (588)
                          |||+
T Consensus       254 ----~~~~  257 (257)
T cd08225         254 ----RPFL  257 (257)
T ss_pred             ----CCCC
Confidence                9996

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=100.00  E-value=4.2e-37  Score=323.61  Aligned_cols=261  Identities=22%  Similarity=0.249  Sum_probs=198.5

Q ss_pred             ccccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcC
Q psy4039         190 VDDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVEN  267 (588)
Q Consensus       190 ~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~  267 (588)
                      .|++. ++|.+.+.||+|+||.||+|++.  +..||||++......               ......+.+|+.+++.+  
T Consensus        10 ~~~~~-~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~---------------~~~~~~~~~e~~~l~~l--   71 (342)
T cd07879          10 VWELP-ERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQS---------------EIFAKRAYRELTLLKHM--   71 (342)
T ss_pred             hhccc-cceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCcccc---------------ccchhHHHHHHHHHHhc--
Confidence            34443 78999999999999999999975  789999998431110               00123356788898887  


Q ss_pred             CCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHH
Q psy4039         268 LPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFT  347 (588)
Q Consensus       268 l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~  347 (588)
                        +||||+++++++.....                      .......++||||+..+|..++.   ..+++..+..++.
T Consensus        72 --~h~niv~~~~~~~~~~~----------------------~~~~~~~~lv~e~~~~~l~~~~~---~~~~~~~~~~~~~  124 (342)
T cd07879          72 --QHENVIGLLDVFTSAVS----------------------GDEFQDFYLVMPYMQTDLQKIMG---HPLSEDKVQYLVY  124 (342)
T ss_pred             --CCCCccchhheeccccc----------------------CCCCceEEEEecccccCHHHHHc---CCCCHHHHHHHHH
Confidence              99999999999875321                      01122479999999878877652   2789999999999


Q ss_pred             HHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCC
Q psy4039         348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG  427 (588)
Q Consensus       348 ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~  427 (588)
                      |++.||.|||+++|+||||||+|||++.+     +.+||+|||+++......        ....||+.|+|||++.+...
T Consensus       125 qi~~aL~~LH~~~i~H~dlkp~NIll~~~-----~~~kL~dfg~~~~~~~~~--------~~~~~~~~y~aPE~~~~~~~  191 (342)
T cd07879         125 QMLCGLKYIHSAGIIHRDLKPGNLAVNED-----CELKILDFGLARHADAEM--------TGYVVTRWYRAPEVILNWMH  191 (342)
T ss_pred             HHHHHHHHHHHCCcccCCCCHHHEEECCC-----CCEEEeeCCCCcCCCCCC--------CCceeeecccChhhhcCccc
Confidence            99999999999999999999999999987     899999999987643211        13467889999999865321


Q ss_pred             CccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccccc-------------------------ccccC--------CCC
Q psy4039         428 LFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE-------------------------VNALP--------QLN  474 (588)
Q Consensus       428 ~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~-------------------------~~~~~--------~~~  474 (588)
                           ++.++|||||||++|||++|+.||.+......+.                         ....+        ...
T Consensus       192 -----~~~~~Dv~slGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (342)
T cd07879         192 -----YNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGPEFVQKLEDKAAKSYIKSLPKYPRKDFSTLF  266 (342)
T ss_pred             -----cCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHhcccchHHHHhhcCCcccchHHHHh
Confidence                 4568999999999999999999997632110000                         00000        111


Q ss_pred             CCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccCCCC
Q psy4039         475 TNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGATP  522 (588)
Q Consensus       475 ~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~~~  522 (588)
                      ..+++++.++|.+||+.||.+||++++++.         |||+....+
T Consensus       267 ~~~~~~~~~li~~~l~~dP~~R~~~~e~l~---------h~~f~~~~~  305 (342)
T cd07879         267 PKASPQAVDLLEKMLELDVDKRLTATEALE---------HPYFDSFRD  305 (342)
T ss_pred             cCCCHHHHHHHHHHcCCChhhCcCHHHHhc---------Ccchhhccc
Confidence            346788999999999999999999999999         999985443

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=100.00  E-value=6.3e-37  Score=308.43  Aligned_cols=249  Identities=20%  Similarity=0.247  Sum_probs=186.5

Q ss_pred             eeecccCceeEEEEEEC-----CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEE
Q psy4039         202 KFIAKGTNAVVYEATFR-----GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVV  276 (588)
Q Consensus       202 ~~IG~G~fG~Vy~a~~~-----g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~  276 (588)
                      +.||+|+||.||+|.+.     ...||||.+....   +. .            ....+.+|+.+++.+    +||||++
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~---~~-~------------~~~~~~~e~~~l~~l----~h~~iv~   60 (262)
T cd05058           1 RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRIT---DL-E------------EVEQFLKEGIIMKDF----SHPNVLS   60 (262)
T ss_pred             CcccccCCceEEEEEEecCCCceEEEEEEecCccC---CH-H------------HHHHHHHHHHHHccC----CCCCcce
Confidence            46899999999999874     3579999873211   00 0            123455688888776    9999999


Q ss_pred             EeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q psy4039         277 MHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTH  355 (588)
Q Consensus       277 l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~y  355 (588)
                      +++++....                           ...+++|||+ +|+|.+++......+++..+..++.|+++||.|
T Consensus        61 ~~~~~~~~~---------------------------~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~  113 (262)
T cd05058          61 LLGICLPSE---------------------------GSPLVVLPYMKHGDLRNFIRSETHNPTVKDLIGFGLQVAKGMEY  113 (262)
T ss_pred             EEEEeecCC---------------------------CCcEEEEecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            999775421                           1378999999 689999998765567888899999999999999


Q ss_pred             HHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCC
Q psy4039         356 LNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS  435 (588)
Q Consensus       356 LH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~  435 (588)
                      ||+.+|+||||||+|||++.+     +.+||+|||+++........... ......+++.|+|||++.+..      .+.
T Consensus       114 lH~~~i~H~dlk~~nili~~~-----~~~kl~dfg~~~~~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~------~~~  181 (262)
T cd05058         114 LASKKFVHRDLAARNCMLDES-----FTVKVADFGLARDIYDKEYYSVH-NHTGAKLPVKWMALESLQTQK------FTT  181 (262)
T ss_pred             HHhCCccccccCcceEEEcCC-----CcEEECCccccccccCCcceeec-ccccCcCCccccChhHhccCc------cch
Confidence            999999999999999999987     78999999999765432111100 111334677899999986554      457


Q ss_pred             cCchhhHHHHHHHHhcC-CCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhh
Q psy4039         436 KSDAWTAGTVAYEIFGH-DNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLY  509 (588)
Q Consensus       436 ksDVwS~Gvil~ElltG-~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~  509 (588)
                      ++|||||||++|||++| .+||........   ......+..+..+|+.+.+++.+||+.+|++||++.++++.++..
T Consensus       182 ~~Di~slG~~l~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~il~~l~~~  259 (262)
T cd05058         182 KSDVWSFGVLLWELMTRGAPPYPDVDSFDITVYLLQGRRLLQPEYCPDPLYEVMLSCWHPKPEMRPTFSELVSRIEQI  259 (262)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHH
Confidence            89999999999999995 556654211111   111122334456789999999999999999999999999987744

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=100.00  E-value=9.9e-37  Score=310.63  Aligned_cols=255  Identities=26%  Similarity=0.313  Sum_probs=194.8

Q ss_pred             eEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceE
Q psy4039         198 IQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVV  275 (588)
Q Consensus       198 ~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV  275 (588)
                      |++.+.||+|+||.||+|.++  +..||||++........               ....+.+|+.+++.+.. ..||||+
T Consensus         1 y~~~~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~---------------~~~~~~~e~~~l~~l~~-~~h~~i~   64 (287)
T cd07838           1 YEELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEG---------------IPLSTLREIALLKQLES-FEHPNIV   64 (287)
T ss_pred             CeEEEEecccCceEEEEEEECCCCCEEEEEEeccccccch---------------hhhhHHHHHHHHHHhhc-cCCCCcc
Confidence            678899999999999999997  78999999853221100               11233457777766522 2699999


Q ss_pred             EEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhc-CCCCHHHHHHHHHHHHHHHH
Q psy4039         276 VMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERC-AQLSMHERVLLFTQLLEGVT  354 (588)
Q Consensus       276 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~-~~l~~~~~~~i~~ql~~gL~  354 (588)
                      ++++++.+...                       ......+++||+++++|.+++.... ..+++..+..++.|+++||.
T Consensus        65 ~~~~~~~~~~~-----------------------~~~~~~~l~~e~~~~~l~~~l~~~~~~~l~~~~~~~~~~~i~~al~  121 (287)
T cd07838          65 RLLDVCHGPRT-----------------------DRELKLTLVFEHVDQDLATYLSKCPKPGLPPETIKDLMRQLLRGVD  121 (287)
T ss_pred             eEEEEEeeccC-----------------------CCCceeEEEehhcccCHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence            99999887421                       1122489999999889999987653 36999999999999999999


Q ss_pred             HHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCC
Q psy4039         355 HLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY  434 (588)
Q Consensus       355 yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~  434 (588)
                      |||+.+++|+||||+||+++.+     +.+||+|||++.........      ....+++.|+|||++.+..      .+
T Consensus       122 ~LH~~~i~h~~l~~~nili~~~-----~~~~l~dfg~~~~~~~~~~~------~~~~~~~~~~~PE~~~~~~------~~  184 (287)
T cd07838         122 FLHSHRIVHRDLKPQNILVTSD-----GQVKIADFGLARIYSFEMAL------TSVVVTLWYRAPEVLLQSS------YA  184 (287)
T ss_pred             HHHHCCeeeccCChhhEEEccC-----CCEEEeccCcceeccCCccc------ccccccccccChHHhccCC------CC
Confidence            9999999999999999999988     78999999999776442211      1345788999999997654      45


Q ss_pred             CcCchhhHHHHHHHHhcCCCCCcccccccccc---------------------cccc--------CCCCCCccHHHHHHH
Q psy4039         435 SKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE---------------------VNAL--------PQLNTNVPEVMRRLV  485 (588)
Q Consensus       435 ~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~---------------------~~~~--------~~~~~~~~~~l~~Li  485 (588)
                      .++|||||||++|||++|.+||..........                     ....        ......+++.+.+++
T Consensus       185 ~~~Di~s~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li  264 (287)
T cd07838         185 TPVDMWSVGCIFAELFRRRPLFRGTSEADQLDKIFDVIGLPSEEEWPRNVSLPRSSFPSYTPRSFKSFVPEICEEGLDLL  264 (287)
T ss_pred             CcchhhhHHHHHHHHHhCCCcccCCChHHHHHHHHHHcCCCChHhcCCCcccchhhcccccccchhhhhhhhhHHHHHHH
Confidence            78999999999999999999987532110000                     0000        001123567889999


Q ss_pred             HHhhhhCCCCCCCHHHHHHHHhhhhhcCCccc
Q psy4039         486 AKLLENDPSDRPSAELAATVCQLYLWAPKHWL  517 (588)
Q Consensus       486 ~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~  517 (588)
                      .+||+.||.+||++++++.         |||+
T Consensus       265 ~~~l~~dp~~Rp~~~~il~---------~~~~  287 (287)
T cd07838         265 KKMLTFNPHKRISAFEALQ---------HPYF  287 (287)
T ss_pred             HHHhccCCccCCCHHHHhc---------CcCC
Confidence            9999999999999999998         9996

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=100.00  E-value=6.4e-37  Score=308.62  Aligned_cols=243  Identities=22%  Similarity=0.340  Sum_probs=195.7

Q ss_pred             ecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEEeeee
Q psy4039         204 IAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAF  281 (588)
Q Consensus       204 IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l~~~~  281 (588)
                      ||.|+||.||+|++.  ++.||||.+........              ...+.+.+|+.+++.+    +||||+++++++
T Consensus         1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~--------------~~~~~~~~e~~~l~~l----~h~~i~~~~~~~   62 (262)
T cd05572           1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVET--------------GQQEHIFSEKEILEEC----NHPFIVKLYRTF   62 (262)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEEehhcchhh--------------hHHHHHHHHHHHHHhC----CCCCEeeeeeeE
Confidence            799999999999998  88999999853221110              0123466788888887    899999999988


Q ss_pred             eccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC
Q psy4039         282 TDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHR  360 (588)
Q Consensus       282 ~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yLH~~~  360 (588)
                      .+..                            .++++|||+ +++|.+++.... .+++..+..++.|+++||.|||+++
T Consensus        63 ~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~-~l~~~~~~~~~~~i~~~l~~lH~~~  113 (262)
T cd05572          63 KDKK----------------------------YIYMLMEYCLGGELWTILRDRG-LFDEYTARFYIACVVLAFEYLHNRG  113 (262)
T ss_pred             EcCC----------------------------ccEEEEecCCCCcHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHHhhCC
Confidence            7632                            389999999 689999998754 6899999999999999999999999


Q ss_pred             ceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCCcCchh
Q psy4039         361 TAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAW  440 (588)
Q Consensus       361 IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVw  440 (588)
                      ++|+||||+||+++.+     +.++|+|||++.......      ......|++.|+|||.+....      .+.++|+|
T Consensus       114 ~~h~dl~~~nilv~~~-----~~~~l~df~~~~~~~~~~------~~~~~~~~~~~~~PE~~~~~~------~~~~~Di~  176 (262)
T cd05572         114 IIYRDLKPENLLLDSN-----GYVKLVDFGFAKKLKSGQ------KTWTFCGTPEYVAPEIILNKG------YDFSVDYW  176 (262)
T ss_pred             cccCCCCHHHEEEcCC-----CCEEEeeCCcccccCccc------ccccccCCcCccChhHhcCCC------CCChhhhh
Confidence            9999999999999987     789999999998765432      112356899999999986543      35689999


Q ss_pred             hHHHHHHHHhcCCCCCccccc--cccc----cccccCCCCCCccHHHHHHHHHhhhhCCCCCCC-----HHHHHHHHhhh
Q psy4039         441 TAGTVAYEIFGHDNPFYQSAR--NTDY----EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS-----AELAATVCQLY  509 (588)
Q Consensus       441 S~Gvil~ElltG~~Pf~~~~~--~~~~----~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps-----~~e~l~~L~~~  509 (588)
                      |+|+++|+|++|..||.....  ...+    .....+..+..+++++.++|.+||+.||++||+     ++++++     
T Consensus       177 slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~~~~l~~-----  251 (262)
T cd05572         177 SLGILLYELLTGRPPFGEDDEDPMEIYNDILKGNGKLEFPNYIDKAAKDLIKQLLRRNPEERLGNLKGGIKDIKK-----  251 (262)
T ss_pred             hhHHHHHHHHhCCCCcCCCCCCHHHHHHHHhccCCCCCCCcccCHHHHHHHHHHccCChhhCcCCcccCHHHHhc-----
Confidence            999999999999999976541  1111    112334456667899999999999999999999     889888     


Q ss_pred             hhcCCccccC
Q psy4039         510 LWAPKHWLYG  519 (588)
Q Consensus       510 ~~~~h~w~~~  519 (588)
                          |||++.
T Consensus       252 ----~~~~~~  257 (262)
T cd05572         252 ----HKWFNG  257 (262)
T ss_pred             ----ChhhhC
Confidence                999863

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=100.00  E-value=7e-37  Score=311.57  Aligned_cols=252  Identities=21%  Similarity=0.253  Sum_probs=200.4

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      +-|++.+.||+|+||.||+|.+.  +..||||.+......                .....+.+|+.++..+    +|||
T Consensus         4 ~~~~~~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~~----------------~~~~~~~~e~~~l~~l----~h~~   63 (277)
T cd06641           4 ELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAE----------------DEIEDIQQEITVLSQC----DSPY   63 (277)
T ss_pred             HhhhhheeEeecCCeEEEEEEECCCCcEEEEEEeccccch----------------HHHHHHHHHHHHHHhc----CCCC
Confidence            34678889999999999999875  789999987421110                0123466788888887    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++++.+..                            ..++||||+ +++|.+++...  .+++..+..++.|++.|
T Consensus        64 iv~~~~~~~~~~----------------------------~~~lv~e~~~~~~l~~~i~~~--~~~~~~~~~~~~~l~~~  113 (277)
T cd06641          64 VTKYYGSYLKDT----------------------------KLWIIMEYLGGGSALDLLEPG--PLDETQIATILREILKG  113 (277)
T ss_pred             EeEEEEEEEeCC----------------------------eEEEEEEeCCCCcHHHHHhcC--CCCHHHHHHHHHHHHHH
Confidence            999999987632                            489999999 57999998754  78999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      +.|||+.|++|+||||+||+++.+     +.++|+|||++........     ......|+..|+|||.+.+..      
T Consensus       114 l~~lh~~~i~h~dl~p~Ni~i~~~-----~~~~l~dfg~~~~~~~~~~-----~~~~~~~~~~y~~PE~~~~~~------  177 (277)
T cd06641         114 LDYLHSEKKIHRDIKAANVLLSEH-----GEVKLADFGVAGQLTDTQI-----KRNTFVGTPFWMAPEVIKQSA------  177 (277)
T ss_pred             HHHHccCCeecCCCCHHhEEECCC-----CCEEEeecccceecccchh-----hhccccCCccccChhhhccCC------
Confidence            999999999999999999999877     7899999999876543211     111346888999999986543      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhh
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLY  509 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~  509 (588)
                      .+.++|||||||++|+|++|..||........   ......+.++..++.++.+++.+||+.+|.+||++.++++     
T Consensus       178 ~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~l~-----  252 (277)
T cd06641         178 YDSKADIWSLGITAIELAKGEPPHSELHPMKVLFLIPKNNPPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELLK-----  252 (277)
T ss_pred             CCchhhHHHHHHHHHHHHcCCCCCCccchHHHHHHHhcCCCCCCCcccCHHHHHHHHHHccCChhhCcCHHHHHh-----
Confidence            34689999999999999999999975322111   1112234455678899999999999999999999999999     


Q ss_pred             hhcCCccccCCCC
Q psy4039         510 LWAPKHWLYGATP  522 (588)
Q Consensus       510 ~~~~h~w~~~~~~  522 (588)
                          |||+.....
T Consensus       253 ----~~~~~~~~~  261 (277)
T cd06641         253 ----HKFIVRFAK  261 (277)
T ss_pred             ----CHHHhhhhh
Confidence                999985433

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.6e-36  Score=304.93  Aligned_cols=256  Identities=21%  Similarity=0.280  Sum_probs=200.5

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      .+|.+.+.||+|+||.||+|.+.  +..||+|.+..........            .....+.+|+.+++.+    +|||
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~------------~~~~~~~~ei~~l~~l----~h~~   65 (264)
T cd06653           2 VNWRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETS------------KEVNALECEIQLLKNL----RHDR   65 (264)
T ss_pred             CceeeeeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhh------------HHHHHHHHHHHHHHHc----CCCC
Confidence            57999999999999999999986  7899999874322111110            1223466789999987    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++++.+..                          ...++++|||+ +++|.+++.... .+++..+..++.|++.|
T Consensus        66 i~~~~~~~~~~~--------------------------~~~~~~v~e~~~~~~L~~~~~~~~-~l~~~~~~~~~~~i~~a  118 (264)
T cd06653          66 IVQYYGCLRDPE--------------------------EKKLSIFVEYMPGGSIKDQLKAYG-ALTENVTRRYTRQILQG  118 (264)
T ss_pred             cceEEEEEEcCC--------------------------CCEEEEEEEeCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence            999999886521                          12488999999 579999998654 68999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||++||+||||||+||+++.+     +.++|+|||+++.........  .......|+..|+|||++.+..      
T Consensus       119 l~~LH~~~i~H~dl~p~ni~i~~~-----~~~~l~dfg~~~~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~------  185 (264)
T cd06653         119 VSYLHSNMIVHRDIKGANILRDSA-----GNVKLGDFGASKRIQTICMSG--TGIKSVTGTPYWMSPEVISGEG------  185 (264)
T ss_pred             HHHHHhCCEecCCCCHHHEEEcCC-----CCEEECccccccccccccccC--ccccccCCcccccCHhhhcCCC------
Confidence            999999999999999999999877     789999999998654311110  1112356899999999987654      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCccccccccc----cccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhh
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY----EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQL  508 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~----~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~  508 (588)
                      .+.++|||||||++|||++|+.||.........    .....+.++..+++.+++++.+||+ +|.+||++.++++    
T Consensus       186 ~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~l~-~~~~r~~~~~~~~----  260 (264)
T cd06653         186 YGRKADVWSVACTVVEMLTEKPPWAEYEAMAAIFKIATQPTKPMLPDGVSDACRDFLKQIFV-EEKRRPTAEFLLR----  260 (264)
T ss_pred             CCccccHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHcCCCCCCCCcccCHHHHHHHHHHhc-CcccCccHHHHhc----
Confidence            346899999999999999999999764222111    1223345677889999999999999 5799999999988    


Q ss_pred             hhhcCCccc
Q psy4039         509 YLWAPKHWL  517 (588)
Q Consensus       509 ~~~~~h~w~  517 (588)
                           |||.
T Consensus       261 -----~~~~  264 (264)
T cd06653         261 -----HPFV  264 (264)
T ss_pred             -----CCCC
Confidence                 9884

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=100.00  E-value=1.7e-37  Score=319.25  Aligned_cols=250  Identities=24%  Similarity=0.341  Sum_probs=195.4

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      +.|.....||+|+||.||++.+.  +..||||.+....     .            ...+.+.+|+.+++.+    +|||
T Consensus        22 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~-----~------------~~~~~~~~e~~~l~~l----~h~~   80 (292)
T cd06658          22 EYLDSFIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRK-----Q------------QRRELLFNEVVIMRDY----HHEN   80 (292)
T ss_pred             HHHhhhhcccCCCCeEEEEEEECCCCCEEEEEEEecch-----H------------HHHHHHHHHHHHHHhC----CCCc
Confidence            34455677999999999999885  7899999984211     0            0123456788888887    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++.+...                            ...+++|||+ +++|.+++...  .+++.++..++.|++.|
T Consensus        81 ii~~~~~~~~~----------------------------~~~~lv~e~~~~~~L~~~~~~~--~l~~~~~~~~~~qi~~~  130 (292)
T cd06658          81 VVDMYNSYLVG----------------------------DELWVVMEFLEGGALTDIVTHT--RMNEEQIATVCLSVLRA  130 (292)
T ss_pred             HHHHHHheecC----------------------------CeEEEEEeCCCCCcHHHHHhcC--CCCHHHHHHHHHHHHHH
Confidence            99999887752                            1489999999 57899888654  78999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||+++|+||||||+||+++.+     +.++|+|||++........     ......||+.|+|||++.+..      
T Consensus       131 l~~LH~~~ivH~dlkp~Nill~~~-----~~~kL~dfg~~~~~~~~~~-----~~~~~~~~~~y~aPE~~~~~~------  194 (292)
T cd06658         131 LSYLHNQGVIHRDIKSDSILLTSD-----GRIKLSDFGFCAQVSKEVP-----KRKSLVGTPYWMAPEVISRLP------  194 (292)
T ss_pred             HHHHHHCCEeecCCCHHHEEEcCC-----CCEEEccCcchhhcccccc-----cCceeecCccccCHHHHccCC------
Confidence            999999999999999999999987     7899999999876433211     112356899999999986554      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcccccccccc---ccccC--CCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHh
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE---VNALP--QLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~---~~~~~--~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~  507 (588)
                      .+.++|||||||++|||++|..||..........   ....+  .....++..+++++.+||..||.+|||++++++   
T Consensus       195 ~~~~~Dv~slGvil~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~il~---  271 (292)
T cd06658         195 YGTEVDIWSLGIMVIEMIDGEPPYFNEPPLQAMRRIRDNLPPRVKDSHKVSSVLRGFLDLMLVREPSQRATAQELLQ---  271 (292)
T ss_pred             CCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCccccccccCHHHHHHHHHHccCChhHCcCHHHHhh---
Confidence            4578999999999999999999997642211111   01111  122356888999999999999999999999999   


Q ss_pred             hhhhcCCccccCCC
Q psy4039         508 LYLWAPKHWLYGAT  521 (588)
Q Consensus       508 ~~~~~~h~w~~~~~  521 (588)
                            |||+....
T Consensus       272 ------~~~~~~~~  279 (292)
T cd06658         272 ------HPFLKLAG  279 (292)
T ss_pred             ------ChhhhccC
Confidence                  99998433

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=100.00  E-value=4.6e-37  Score=323.55  Aligned_cols=254  Identities=23%  Similarity=0.271  Sum_probs=198.3

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||.||+|.+.  +..||||++....   ..            ......+.+|+.+++.+    +|||
T Consensus        15 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~------------~~~~~~~~~E~~~l~~l----~h~~   75 (343)
T cd07880          15 DRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPF---QS------------ELFAKRAYRELRLLKHM----KHEN   75 (343)
T ss_pred             cceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecccc---cc------------hHHHHHHHHHHHHHHhc----CCCC
Confidence            78999999999999999999886  7899999984311   00            00123455789999887    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      |+++++++.....                      .......++|||+++++|.+++...  .+++..+..++.|+++||
T Consensus        76 iv~~~~~~~~~~~----------------------~~~~~~~~lv~e~~~~~l~~~~~~~--~l~~~~~~~i~~qi~~al  131 (343)
T cd07880          76 VIGLLDVFTPDLS----------------------LDRFHDFYLVMPFMGTDLGKLMKHE--KLSEDRIQFLVYQMLKGL  131 (343)
T ss_pred             ccceeeeecCCcc----------------------ccccceEEEEEecCCCCHHHHHhcC--CCCHHHHHHHHHHHHHHH
Confidence            9999999875321                      1112247999999988999888754  799999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN  433 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~  433 (588)
                      .|||+.||+||||||+||+++.+     +.++|+|||++.......        ....+++.|+|||++.+...     .
T Consensus       132 ~~LH~~gi~H~dlkp~Nill~~~-----~~~kl~dfg~~~~~~~~~--------~~~~~~~~y~aPE~~~~~~~-----~  193 (343)
T cd07880         132 KYIHAAGIIHRDLKPGNLAVNED-----CELKILDFGLARQTDSEM--------TGYVVTRWYRAPEVILNWMH-----Y  193 (343)
T ss_pred             HHHHhCCeecCCCCHHHEEEcCC-----CCEEEeecccccccccCc--------cccccCCcccCHHHHhCCCC-----C
Confidence            99999999999999999999977     789999999997653321        13457899999999865321     3


Q ss_pred             CCcCchhhHHHHHHHHhcCCCCCcccccccccc---------------------------------ccccCCCCCCccHH
Q psy4039         434 YSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE---------------------------------VNALPQLNTNVPEV  480 (588)
Q Consensus       434 ~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~  480 (588)
                      +.++||||+||++|+|++|..||..........                                 ..........++++
T Consensus       194 ~~~~Di~slG~ll~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (343)
T cd07880         194 TQTVDIWSVGCIMAEMLTGKPLFKGHDHLDQLMEIMKVTGTPSKEFVQKLQSEDAKNYVKKLPRFRKKDFRSLLPNANPL  273 (343)
T ss_pred             CcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHhhcchhHHHHHHhccccCcchHHHhccCCChH
Confidence            467999999999999999999997531100000                                 00001123467888


Q ss_pred             HHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccC
Q psy4039         481 MRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       481 l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~  519 (588)
                      +.++|.+||+.||.+|||+.+++.         |||++.
T Consensus       274 ~~~li~~~l~~dP~~R~t~~~~l~---------~~~~~~  303 (343)
T cd07880         274 AVNVLEKMLVLDAESRITAAEALA---------HPYFEE  303 (343)
T ss_pred             HHHHHHHHcCCChhhCCCHHHHhc---------CccHhh
Confidence            999999999999999999999998         999983

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=100.00  E-value=9e-37  Score=319.56  Aligned_cols=259  Identities=22%  Similarity=0.257  Sum_probs=196.0

Q ss_pred             CeEEeeeecccCceeEEEEEEC----CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         197 DIQIGKFIAKGTNAVVYEATFR----GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~~~----g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      +|++.+.||+|+||.||++.+.    +..||||.+......               ....+.+.+|+.+++.+   ..||
T Consensus         1 ~y~~~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~---------------~~~~~~~~~E~~~l~~l---~~h~   62 (332)
T cd07857           1 RYELIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSK---------------KILAKRALRELKLLRHF---RGHK   62 (332)
T ss_pred             CceEEEEccccCCeEEEEEEeCCCCcCceEEEEEecccccc---------------chhHHHHHHHHHHHHHh---cCCC
Confidence            4788999999999999999987    558999998531100               00123445688888876   4699


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      ||+++++.+....                        .....+|++||+++++|.+++.... .+++..+..++.||+.|
T Consensus        63 ~iv~~~~~~~~~~------------------------~~~~~~~~~~e~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~a  117 (332)
T cd07857          63 NITCLYDMDIVFP------------------------GNFNELYLYEELMEADLHQIIRSGQ-PLTDAHFQSFIYQILCG  117 (332)
T ss_pred             Chheeeeeeeecc------------------------ccCCcEEEEEecccCCHHHHHhcCC-CCCHHHHHHHHHHHHHH
Confidence            9999998754311                        1112488999999999999997654 79999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||++||+||||||+|||++.+     +.+||+|||+++......... ........||+.|+|||++.+...     
T Consensus       118 L~~LH~~givH~dlkp~Nili~~~-----~~~kl~Dfg~a~~~~~~~~~~-~~~~~~~~g~~~y~aPE~~~~~~~-----  186 (332)
T cd07857         118 LKYIHSANVLHRDLKPGNLLVNAD-----CELKICDFGLARGFSENPGEN-AGFMTEYVATRWYRAPEIMLSFQS-----  186 (332)
T ss_pred             HHHHHhCCcccCCCCHHHeEEcCC-----CCEEeCcCCCceecccccccc-cccccCcccCccccCcHHHhCCCC-----
Confidence            999999999999999999999987     789999999998755422111 111224578999999998865321     


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcccccccc---------------------------------ccccccCCCCCCccH
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD---------------------------------YEVNALPQLNTNVPE  479 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~---------------------------------~~~~~~~~~~~~~~~  479 (588)
                      .+.++||||+||++|+|++|.+||........                                 ............++.
T Consensus       187 ~~~~~Di~slGv~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (332)
T cd07857         187 YTKAIDVWSVGCILAELLGRKPVFKGKDYVDQLNQILQVLGTPDEETLSRIGSPKAQNYIRSLPNIPKKPFESIFPNANP  266 (332)
T ss_pred             CCcHHHHHHHHHHHHHHHhCCcCCCCCCHHHHHHHHHHHhCCCCHHHHHhhhhhhHHHHHHhccccCCcchHhhCCCCCH
Confidence            45689999999999999999999865211000                                 000001112234678


Q ss_pred             HHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCcccc
Q psy4039         480 VMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLY  518 (588)
Q Consensus       480 ~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~  518 (588)
                      .+.+++.+||+.||.+|||+++++.         |||++
T Consensus       267 ~~~~li~~~l~~~P~~R~t~~~ll~---------~~~~~  296 (332)
T cd07857         267 LALDLLEKLLAFDPTKRISVEEALE---------HPYLA  296 (332)
T ss_pred             HHHHHHHHHccCCcccCCCHHHHhc---------Chhhh
Confidence            8999999999999999999999988         99986

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=100.00  E-value=7.6e-37  Score=310.13  Aligned_cols=245  Identities=22%  Similarity=0.257  Sum_probs=187.8

Q ss_pred             eeecccCceeEEEEEEC--C--eeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEE
Q psy4039         202 KFIAKGTNAVVYEATFR--G--VEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVM  277 (588)
Q Consensus       202 ~~IG~G~fG~Vy~a~~~--g--~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l  277 (588)
                      +.||+|+||.||+|.+.  +  ..+|+|.+......                ...+.+.+|+.++.++   ..||||+++
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~----------------~~~~~~~~E~~~l~~l---~~h~~iv~~   61 (270)
T cd05047           1 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASK----------------DDHRDFAGELEVLCKL---GHHPNIINL   61 (270)
T ss_pred             CcCCCCCCceEEEEEEcCCCCeeEEEEEEccccCCH----------------HHHHHHHHHHHHHHhh---ccCCCeeeE
Confidence            36999999999999986  2  35788887421100                0123455688888776   579999999


Q ss_pred             eeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc---------------CCCCHHH
Q psy4039         278 HFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC---------------AQLSMHE  341 (588)
Q Consensus       278 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~---------------~~l~~~~  341 (588)
                      ++++....                            ..+++|||+ +|+|.+++....               ..+++.+
T Consensus        62 ~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~  113 (270)
T cd05047          62 LGACEHRG----------------------------YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQ  113 (270)
T ss_pred             EEEEecCC----------------------------CceEEEEeCCCCcHHHHHHhccccccccccccccCCcCCCCHHH
Confidence            99987632                            389999999 689999997642               2478999


Q ss_pred             HHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhH
Q psy4039         342 RVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEV  421 (588)
Q Consensus       342 ~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~  421 (588)
                      +..++.|++.||+|||++|++||||||+|||++.+     +.+||+|||+++......      .......+..|+|||+
T Consensus       114 ~~~~~~~i~~al~~lH~~~i~H~dikp~nili~~~-----~~~kl~dfgl~~~~~~~~------~~~~~~~~~~y~apE~  182 (270)
T cd05047         114 LLHFAADVARGMDYLSQKQFIHRDLAARNILVGEN-----YVAKIADFGLSRGQEVYV------KKTMGRLPVRWMAIES  182 (270)
T ss_pred             HHHHHHHHHHHHHHHHHCCEeecccccceEEEcCC-----CeEEECCCCCccccchhh------hccCCCCccccCChHH
Confidence            99999999999999999999999999999999987     789999999986432211      0111234667999999


Q ss_pred             HhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCccccccccc---cccccCCCCCCccHHHHHHHHHhhhhCCCCCC
Q psy4039         422 ALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTDY---EVNALPQLNTNVPEVMRRLVAKLLENDPSDRP  497 (588)
Q Consensus       422 l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~~---~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rp  497 (588)
                      +....      ++.++|||||||++|||++ |..||.+.......   ........+..++.++.+++.+||+.||.+||
T Consensus       183 ~~~~~------~~~~~Di~slG~il~el~~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp  256 (270)
T cd05047         183 LNYSV------YTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERP  256 (270)
T ss_pred             HccCC------CCchhhHHHHHHHHHHHHcCCCCCccccCHHHHHHHHhCCCCCCCCCcCCHHHHHHHHHHcccChhhCC
Confidence            86554      4578999999999999997 99999654221111   11122234556789999999999999999999


Q ss_pred             CHHHHHHHHhhhh
Q psy4039         498 SAELAATVCQLYL  510 (588)
Q Consensus       498 s~~e~l~~L~~~~  510 (588)
                      |++++++.|..++
T Consensus       257 s~~~il~~l~~~~  269 (270)
T cd05047         257 SFAQILVSLNRML  269 (270)
T ss_pred             CHHHHHHHHHHhh
Confidence            9999999887554

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=100.00  E-value=9e-37  Score=309.00  Aligned_cols=249  Identities=19%  Similarity=0.193  Sum_probs=183.3

Q ss_pred             eeecccCceeEEEEEEC----CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEE
Q psy4039         202 KFIAKGTNAVVYEATFR----GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVM  277 (588)
Q Consensus       202 ~~IG~G~fG~Vy~a~~~----g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l  277 (588)
                      +.||+|+||.||+|...    ...+|+|.+....   ..             .....+.+|+.+++.+    +||||+++
T Consensus         1 ~~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~---~~-------------~~~~~~~~e~~~~~~l----~h~nii~~   60 (269)
T cd05042           1 DEIGNGWFGKVLLGEAHRGMSKARVVVKELRASA---TP-------------DEQLLFLQEVQPYREL----NHPNVLQC   60 (269)
T ss_pred             CcCCccCCceEEEEEEecCCCCeEEEEeecCccC---Ch-------------HHHHHHHHHHHHHHhC----CCCCcceE
Confidence            36999999999999764    3578888764211   10             0123456688888876    99999999


Q ss_pred             eeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc----CCCCHHHHHHHHHHHHHH
Q psy4039         278 HFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC----AQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       278 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~----~~l~~~~~~~i~~ql~~g  352 (588)
                      ++.+.+..                            ..++||||+ +|+|.+++....    ...++..+..++.||+.|
T Consensus        61 ~~~~~~~~----------------------------~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~  112 (269)
T cd05042          61 LGQCIESI----------------------------PYLLVLEFCPLGDLKNYLRSNRGMVAQMAQKDVLQRMACEVASG  112 (269)
T ss_pred             EEEECCCC----------------------------ceEEEEEeCCCCcHHHHHHhccccccccccHHHHHHHHHHHHHH
Confidence            99887632                            389999999 589999998642    235678889999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCC-ccC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGL-FSF  431 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~-~~~  431 (588)
                      |+|||+++|+||||||+|||++.+     +.+||+|||+++.........   ......+++.|+|||++...... ...
T Consensus       113 l~~lH~~~ivH~dlkp~Nill~~~-----~~~kl~dfg~~~~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~~  184 (269)
T cd05042         113 LLWLHQADFIHSDLALRNCQLTAD-----LSVKIGDYGLALEQYPEDYYI---TKDCHAVPLRWLAPELVEIRGQDLLPK  184 (269)
T ss_pred             HHHHHhcCEecccccHhheEecCC-----CcEEEeccccccccccchhee---ccCCCCCcccccCHHHHhhcccccccc
Confidence            999999999999999999999987     789999999987543321110   01134467789999998653211 111


Q ss_pred             CCCCcCchhhHHHHHHHHhc-CCCCCcccccccc--------ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHH
Q psy4039         432 VNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD--------YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA  502 (588)
Q Consensus       432 ~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~--------~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~  502 (588)
                      ..+.++|||||||++|||++ |..||........        ......+..+..+++.+.+++..|| .||++|||++++
T Consensus       185 ~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dp~~Rpt~~~v  263 (269)
T cd05042         185 DQTKKSNIWSLGVTMWELFTAADQPYPDLSDEQVLKQVVREQDIKLPKPQLDLKYSDRWYEVMQFCW-LDPETRPTAEEV  263 (269)
T ss_pred             ccchhhHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHhhccCccCCCCcccccCCHHHHHHHHHHh-cCcccccCHHHH
Confidence            24568999999999999999 7888865321110        0011123345578889999999999 599999999999


Q ss_pred             HHHHh
Q psy4039         503 ATVCQ  507 (588)
Q Consensus       503 l~~L~  507 (588)
                      ++.+.
T Consensus       264 ~~~l~  268 (269)
T cd05042         264 HELLT  268 (269)
T ss_pred             HHHhc
Confidence            88654

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=100.00  E-value=9.2e-37  Score=313.90  Aligned_cols=251  Identities=26%  Similarity=0.338  Sum_probs=200.0

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||.||++...  +..||+|.+......                 ..+.+.+|+.+++.+    +|||
T Consensus        19 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~-----------------~~~~~~~e~~~l~~l----~hp~   77 (293)
T cd06647          19 KKYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQP-----------------KKELIINEILVMREN----KHPN   77 (293)
T ss_pred             hhceeeeEecCCCCeEEEEEEEcCCCCEEEEEEeccccch-----------------HHHHHHHHHHHHhhc----CCCC
Confidence            78999999999999999999875  788999998421100                 123456688888887    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++++.+..                            ..|+|+||+ +++|.+++...  .+++.++..++.|++.|
T Consensus        78 i~~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~~~~~--~l~~~~~~~i~~~l~~a  127 (293)
T cd06647          78 IVNYLDSYLVGD----------------------------ELWVVMEYLAGGSLTDVVTET--CMDEGQIAAVCRECLQA  127 (293)
T ss_pred             eeehhheeeeCC----------------------------cEEEEEecCCCCcHHHHHhhc--CCCHHHHHHHHHHHHHH
Confidence            999999887632                            389999999 68999999765  78999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||++|++||||||+||+++.+     +.++|+|||++........     ......|++.|+|||.+....      
T Consensus       128 l~~LH~~gi~H~dL~p~Nili~~~-----~~~kL~dfg~~~~~~~~~~-----~~~~~~~~~~y~~PE~~~~~~------  191 (293)
T cd06647         128 LEFLHSNQVIHRDIKSDNILLGMD-----GSVKLTDFGFCAQITPEQS-----KRSTMVGTPYWMAPEVVTRKA------  191 (293)
T ss_pred             HHHHHhCCEeeccCCHHHEEEcCC-----CCEEEccCcceeccccccc-----ccccccCChhhcCchhhccCC------
Confidence            999999999999999999999887     7899999999876543211     111346889999999986653      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCccccccccccc---cccCC--CCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHh
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV---NALPQ--LNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~---~~~~~--~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~  507 (588)
                      .+.++|||||||++|++++|+.||...........   ...+.  .+..++..+++++.+||..+|++||++++++.   
T Consensus       192 ~~~~~Dv~slG~ll~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~---  268 (293)
T cd06647         192 YGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQ---  268 (293)
T ss_pred             CCchhhHHHHHHHHHHHHhCCCCCCCCChhhheeehhcCCCCCCCCccccCHHHHHHHHHHccCChhhCcCHHHHhc---
Confidence            45689999999999999999999976432211111   11111  23456788999999999999999999999999   


Q ss_pred             hhhhcCCccccCCCC
Q psy4039         508 LYLWAPKHWLYGATP  522 (588)
Q Consensus       508 ~~~~~~h~w~~~~~~  522 (588)
                            |+|++...+
T Consensus       269 ------h~~~~~~~~  277 (293)
T cd06647         269 ------HPFLKIAKP  277 (293)
T ss_pred             ------CHHHhcCcc
Confidence                  999985553

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=100.00  E-value=3.8e-37  Score=322.88  Aligned_cols=259  Identities=22%  Similarity=0.287  Sum_probs=199.0

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||.||+|.+.  +..||||.+.....  +.             .....+.+|+.+++.+   .+|||
T Consensus         7 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~--~~-------------~~~~~~~~E~~~l~~l---~~h~n   68 (337)
T cd07852           7 RKYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFR--NA-------------TDAQRTFREIMFLQEL---GDHPN   68 (337)
T ss_pred             hHHHHhHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccC--cc-------------hhhhhhhHHHHHHHHh---cCCCC
Confidence            78999999999999999999986  78999999843110  00             0122345688888876   48999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      |++++++|....                          ....++||||++++|..++...  .+++..+..++.||+.||
T Consensus        69 i~~~~~~~~~~~--------------------------~~~~~lv~e~~~~~L~~~~~~~--~~~~~~~~~i~~qi~~~L  120 (337)
T cd07852          69 IVKLLNVIKAEN--------------------------DKDIYLVFEYMETDLHAVIRAN--ILEDVHKRYIMYQLLKAL  120 (337)
T ss_pred             ccceeeeeccCC--------------------------CceEEEEecccccCHHHHHhcC--CCCHHHHHHHHHHHHHHH
Confidence            999999876521                          1248999999999999998765  789999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN  433 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~  433 (588)
                      .|||+.||+||||||+||+++.+     +.+||+|||+++..................||+.|+|||++.+...     .
T Consensus       121 ~~LH~~~i~H~dl~p~nill~~~-----~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-----~  190 (337)
T cd07852         121 KYIHSGNVIHRDLKPSNILLNSD-----CRVKLADFGLARSLSELEENPENPVLTDYVATRWYRAPEILLGSTR-----Y  190 (337)
T ss_pred             HHHHHCCeecCCCCHHHEEEcCC-----CcEEEeeccchhccccccccccCcchhcccccccccCceeeecccc-----c
Confidence            99999999999999999999988     8999999999987644322111112224568999999998765321     3


Q ss_pred             CCcCchhhHHHHHHHHhcCCCCCcccccccc------------------------------c---cccccCCCCCCccHH
Q psy4039         434 YSKSDAWTAGTVAYEIFGHDNPFYQSARNTD------------------------------Y---EVNALPQLNTNVPEV  480 (588)
Q Consensus       434 ~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~------------------------------~---~~~~~~~~~~~~~~~  480 (588)
                      +.++|||||||++|||++|+.||.+......                              .   ...........++.+
T Consensus       191 ~~~sDi~slG~~l~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (337)
T cd07852         191 TKGVDMWSVGCILGEMLLGKPLFPGTSTLNQLEKIIEVIGPPSAEDIESIKSPFAATMLDSLPSRPRKPLDELLPKASDD  270 (337)
T ss_pred             cccchHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHHHhhhHHHhhhhcccccccchhhhccCCCHH
Confidence            4679999999999999999999964211000                              0   000001112347889


Q ss_pred             HHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccC
Q psy4039         481 MRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       481 l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~  519 (588)
                      +.++|.+||+.||++|||+.++++         |||++.
T Consensus       271 l~~li~~~l~~~P~~Rps~~~il~---------~~~~~~  300 (337)
T cd07852         271 ALDLLKKLLVFNPNKRLTAEEALE---------HPYVAQ  300 (337)
T ss_pred             HHHHHHHhccCCcccccCHHHHhh---------Chhhhh
Confidence            999999999999999999999999         999974

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=100.00  E-value=7.1e-37  Score=321.86  Aligned_cols=266  Identities=21%  Similarity=0.234  Sum_probs=198.5

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      .+|.+.+.||.|+||.||+|.+.  +..||+|.+......                 ..+.+.+|+.+++.+    +|||
T Consensus         5 ~~y~~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~~-----------------~~~~~~~Ei~~l~~l----~h~~   63 (342)
T cd07854           5 SRYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDPQ-----------------SVKHALREIKIIRRL----DHDN   63 (342)
T ss_pred             cceEEEEEecCCCCEEEEEEEECCCCcEEEEEEEecCCCc-----------------hHHHHHHHHHHHHhc----CCCc
Confidence            78999999999999999999986  789999998532210                 123455688999887    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      |+++++++.+.......              ..+........+++|||++++|.+++...  .+++..+..++.|+++||
T Consensus        64 i~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~lv~e~~~~~L~~~~~~~--~l~~~~~~~~~~qi~~aL  127 (342)
T cd07854          64 IVKVYEVLGPSGSDLTE--------------DVGSLTELNSVYIVQEYMETDLANVLEQG--PLSEEHARLFMYQLLRGL  127 (342)
T ss_pred             chhhHhhhccccccccc--------------ccccccccceEEEEeecccccHHHHHHcC--CCCHHHHHHHHHHHHHHH
Confidence            99999887753211000              00011223468999999988999888654  799999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN  433 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~  433 (588)
                      .|||+.||+||||||+||+++.+.    ..+||+|||+++........  ........||..|+|||++.....     +
T Consensus       128 ~~LH~~givH~dikp~Nili~~~~----~~~kl~dfg~~~~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~-----~  196 (342)
T cd07854         128 KYIHSANVLHRDLKPANVFINTED----LVLKIGDFGLARIVDPHYSH--KGYLSEGLVTKWYRSPRLLLSPNN-----Y  196 (342)
T ss_pred             HHHHhCCcccCCCCHHHEEEcCCC----ceEEECCcccceecCCcccc--ccccccccccccccCHHHHhCccc-----c
Confidence            999999999999999999997542    57899999999765432111  111112357889999998754321     4


Q ss_pred             CCcCchhhHHHHHHHHhcCCCCCcccccccccc---------------------------cccc-----CCCCCCccHHH
Q psy4039         434 YSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE---------------------------VNAL-----PQLNTNVPEVM  481 (588)
Q Consensus       434 ~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~---------------------------~~~~-----~~~~~~~~~~l  481 (588)
                      +.++|||||||++|||++|+.||..........                           ....     ......++.++
T Consensus       197 ~~~~DiwSlGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (342)
T cd07854         197 TKAIDMWAAGCIFAEMLTGKPLFAGAHELEQMQLILESVPVVREEDRNELLNVIPSFVRNDGGEPRRPLRDLLPGVNPEA  276 (342)
T ss_pred             CchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChHHhhhhhhhhhhhhhhcccccCCCHHHHccCCCHHH
Confidence            568999999999999999999996531100000                           0000     01123567889


Q ss_pred             HHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCcccc
Q psy4039         482 RRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLY  518 (588)
Q Consensus       482 ~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~  518 (588)
                      .++|.+||+.||.+|||+++++.         |||++
T Consensus       277 ~~li~~~L~~dP~~R~t~~ell~---------h~~~~  304 (342)
T cd07854         277 LDFLEQILTFNPMDRLTAEEALM---------HPYMS  304 (342)
T ss_pred             HHHHHHHhCCCchhccCHHHHhC---------CCccc
Confidence            99999999999999999999999         99997

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=8e-37  Score=309.13  Aligned_cols=241  Identities=18%  Similarity=0.217  Sum_probs=180.1

Q ss_pred             eeecccCceeEEEEEEC--------------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcC
Q psy4039         202 KFIAKGTNAVVYEATFR--------------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVEN  267 (588)
Q Consensus       202 ~~IG~G~fG~Vy~a~~~--------------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~  267 (588)
                      +.||+|+||.||+|+..              ...||+|.+....   .  .            ....+.+|+.++..+  
T Consensus         1 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~---~--~------------~~~~~~~~~~~l~~l--   61 (262)
T cd05077           1 EHLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSH---R--D------------ISLAFFETASMMRQV--   61 (262)
T ss_pred             CccccCCcceEeeeecccCCCccccccchhhceeEEEeecChhh---h--h------------HHHHHHHHHHHHHhC--
Confidence            36899999999999854              3368999874211   0  0            122355677888876  


Q ss_pred             CCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHH
Q psy4039         268 LPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLF  346 (588)
Q Consensus       268 l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~  346 (588)
                        +||||+++++++.+..                            ..+++|||+ +|+|..++......+++..++.++
T Consensus        62 --~hp~iv~~~~~~~~~~----------------------------~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~i~  111 (262)
T cd05077          62 --SHKHIVLLYGVCVRDV----------------------------ENIMVEEFVEFGPLDLFMHRKSDVLTTPWKFKVA  111 (262)
T ss_pred             --CCCCEeeEEEEEecCC----------------------------CCEEEEecccCCCHHHHHHhcCCCCCHHHHHHHH
Confidence              9999999999987632                            378999999 578999987765579999999999


Q ss_pred             HHHHHHHHHHHhCCceeccCCCCcEEEcCCCCC--CCCceeeeccccccccCCCCccccccccccccCCccccchhHHhc
Q psy4039         347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDN--TCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALA  424 (588)
Q Consensus       347 ~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~--~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~  424 (588)
                      .||++||+|||+++|+||||||+|||++.+...  ....++++|||++......         ....|+..|+|||++..
T Consensus       112 ~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~~~~~~~~~l~d~g~~~~~~~~---------~~~~~~~~y~aPE~~~~  182 (262)
T cd05077         112 KQLASALSYLEDKDLVHGNVCTKNILLAREGIDGECGPFIKLSDPGIPITVLSR---------QECVERIPWIAPECVED  182 (262)
T ss_pred             HHHHHHHHHhhhCCeECCCCCcccEEEecCCccCCCCceeEeCCCCCCccccCc---------ccccccccccChhhhcC
Confidence            999999999999999999999999999865211  1124899999998654321         13457889999998863


Q ss_pred             CCCCccCCCCCcCchhhHHHHHHHHh-cCCCCCcccccccccc-ccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHH
Q psy4039         425 TPGLFSFVNYSKSDAWTAGTVAYEIF-GHDNPFYQSARNTDYE-VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA  502 (588)
Q Consensus       425 ~~~~~~~~~~~ksDVwS~Gvil~Ell-tG~~Pf~~~~~~~~~~-~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~  502 (588)
                      ...     ++.++|||||||++|||+ +|..||.......... ...........++++.+||.+||+.||.+||++.++
T Consensus       183 ~~~-----~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rp~~~~i  257 (262)
T cd05077         183 SKN-----LSIAADKWSFGTTLWEICYNGEIPLKDKTLAEKERFYEGQCMLVTPSCKELADLMTHCMNYDPNQRPFFRAI  257 (262)
T ss_pred             CCC-----CCchhHHHHHHHHHHHHHhCCCCCCCCcchhHHHHHHhcCccCCCCChHHHHHHHHHHcCCChhhCcCHHHH
Confidence            321     456899999999999998 5888886532211110 011112233456789999999999999999999998


Q ss_pred             HHH
Q psy4039         503 ATV  505 (588)
Q Consensus       503 l~~  505 (588)
                      +..
T Consensus       258 l~~  260 (262)
T cd05077         258 MRD  260 (262)
T ss_pred             HHh
Confidence            874

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=6.9e-37  Score=308.02  Aligned_cols=247  Identities=23%  Similarity=0.324  Sum_probs=186.4

Q ss_pred             eeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEEee
Q psy4039         202 KFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHF  279 (588)
Q Consensus       202 ~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l~~  279 (588)
                      +.||.|+||.||+|.+.  ++.||||.+.........              ....+..|..++...   ..||||+++++
T Consensus         2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~~~--------------~~~~~~~e~~~~~~~---~~~~~i~~~~~   64 (260)
T cd05611           2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKN--------------QVTNVKAERAIMMIQ---GESPYVAKLYY   64 (260)
T ss_pred             ccCCcCCCeeEEEEEecCCCCeEEEEEecchhhhHHH--------------HHHHHHHHHHHHhhc---CCCCCeeeeee
Confidence            56999999999999985  789999998532211100              001122343333322   48999999999


Q ss_pred             eeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh
Q psy4039         280 AFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNM  358 (588)
Q Consensus       280 ~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yLH~  358 (588)
                      ++.+..                            ..|++|||+ +++|.+++.... .+++..+..++.|+++||.|||+
T Consensus        65 ~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~lH~  115 (260)
T cd05611          65 SFQSKD----------------------------YLYLVMEYLNGGDCASLIKTLG-GLPEDWAKQYIAEVVLGVEDLHQ  115 (260)
T ss_pred             eEEcCC----------------------------eEEEEEeccCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence            987631                            499999999 679999997654 78999999999999999999999


Q ss_pred             CCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCCcCc
Q psy4039         359 HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSD  438 (588)
Q Consensus       359 ~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksD  438 (588)
                      .+|+||||+|+||+++.+     +.++|+|||+++....         .....|++.|+|||.+.+..      ++.++|
T Consensus       116 ~~i~H~dl~p~nil~~~~-----~~~~l~dfg~~~~~~~---------~~~~~~~~~y~~pe~~~~~~------~~~~~D  175 (260)
T cd05611         116 RGIIHRDIKPENLLIDQT-----GHLKLTDFGLSRNGLE---------NKKFVGTPDYLAPETILGVG------DDKMSD  175 (260)
T ss_pred             CCeecCCCCHHHeEECCC-----CcEEEeecccceeccc---------cccCCCCcCccChhhhcCCC------Ccchhh
Confidence            999999999999999987     7899999999875432         11346889999999987654      457899


Q ss_pred             hhhHHHHHHHHhcCCCCCcccccccccc------ccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhc
Q psy4039         439 AWTAGTVAYEIFGHDNPFYQSARNTDYE------VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWA  512 (588)
Q Consensus       439 VwS~Gvil~ElltG~~Pf~~~~~~~~~~------~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~  512 (588)
                      |||||+++|||++|..||........+.      ..........+++++.+++.+||+.||++||++.++.+.+.     
T Consensus       176 v~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~~~l~-----  250 (260)
T cd05611         176 WWSLGCVIFEFLFGYPPFHAETPDAVFDNILSRRINWPEEVKEFCSPEAVDLINRLLCMDPAKRLGANGYQEIKS-----  250 (260)
T ss_pred             hHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcccCCCCcccccCCHHHHHHHHHHccCCHHHccCCCcHHHHHc-----
Confidence            9999999999999999996642221111      01112233467899999999999999999996643333333     


Q ss_pred             CCccccCC
Q psy4039         513 PKHWLYGA  520 (588)
Q Consensus       513 ~h~w~~~~  520 (588)
                       |||++..
T Consensus       251 -~~~~~~~  257 (260)
T cd05611         251 -HPFFKSI  257 (260)
T ss_pred             -ChHhhcC
Confidence             9998643

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=100.00  E-value=1.2e-36  Score=305.94  Aligned_cols=250  Identities=24%  Similarity=0.326  Sum_probs=202.9

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|++|.||+|++.  ++.||||++......                .....+.+|+.++..+    +|||
T Consensus         1 ~~~~~~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~----------------~~~~~~~~e~~~l~~l----~~~~   60 (264)
T cd06623           1 SDLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDE----------------EFRKQLLRELKTLRSC----ESPY   60 (264)
T ss_pred             CcceeeeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcch----------------HHHHHHHHHHHHHHhc----CCCC
Confidence            46889999999999999999997  789999998542211                1234466788888887    7999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCC-CcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYN-TDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~-gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++++...                            ..++++|||+. ++|.+++.... .+++..+..++.|+++|
T Consensus        61 i~~~~~~~~~~----------------------------~~~~lv~e~~~~~~L~~~l~~~~-~l~~~~~~~~~~~l~~~  111 (264)
T cd06623          61 VVKCYGAFYKE----------------------------GEISIVLEYMDGGSLADLLKKVG-KIPEPVLAYIARQILKG  111 (264)
T ss_pred             eeeEEEEEccC----------------------------CeEEEEEEecCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence            99999998763                            24999999995 89999998753 89999999999999999


Q ss_pred             HHHHHh-CCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccC
Q psy4039         353 VTHLNM-HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF  431 (588)
Q Consensus       353 L~yLH~-~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~  431 (588)
                      |.|||+ .+++||||+|+||+++.+     +.++|+|||.+.........     .....|+..|+|||.+....     
T Consensus       112 l~~lh~~~~~~H~~l~~~ni~~~~~-----~~~~l~df~~~~~~~~~~~~-----~~~~~~~~~y~~pE~~~~~~-----  176 (264)
T cd06623         112 LDYLHTKRHIIHRDIKPSNLLINSK-----GEVKIADFGISKVLENTLDQ-----CNTFVGTVTYMSPERIQGES-----  176 (264)
T ss_pred             HHHHhccCCCccCCCCHHHEEECCC-----CCEEEccCccceecccCCCc-----ccceeecccccCHhhhCCCC-----
Confidence            999999 999999999999999987     78999999999876442211     11356889999999986653     


Q ss_pred             CCCCcCchhhHHHHHHHHhcCCCCCccccc------cccccccccCCCCCC-ccHHHHHHHHHhhhhCCCCCCCHHHHHH
Q psy4039         432 VNYSKSDAWTAGTVAYEIFGHDNPFYQSAR------NTDYEVNALPQLNTN-VPEVMRRLVAKLLENDPSDRPSAELAAT  504 (588)
Q Consensus       432 ~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~------~~~~~~~~~~~~~~~-~~~~l~~Li~~~L~~dP~~Rps~~e~l~  504 (588)
                       ++.++||||||+++|+|++|..||.....      .........+..+.. ++..+.+++.+||+.+|++||++.++++
T Consensus       177 -~~~~~Dv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~R~~~~~ll~  255 (264)
T cd06623         177 -YSYAADIWSLGLTLLECALGKFPFLPPGQPSFFELMQAICDGPPPSLPAEEFSPEFRDFISACLQKDPKKRPSAAELLQ  255 (264)
T ss_pred             -CCchhhHHHHHHHHHHHHhCCCCCccccccCHHHHHHHHhcCCCCCCCcccCCHHHHHHHHHHccCChhhCCCHHHHHh
Confidence             45789999999999999999999966421      111112233344555 8899999999999999999999999999


Q ss_pred             HHhhhhhcCCccccC
Q psy4039         505 VCQLYLWAPKHWLYG  519 (588)
Q Consensus       505 ~L~~~~~~~h~w~~~  519 (588)
                               |||++.
T Consensus       256 ---------~~~~~~  261 (264)
T cd06623         256 ---------HPFIKK  261 (264)
T ss_pred             ---------CHHHHh
Confidence                     999863

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=100.00  E-value=1.1e-36  Score=320.81  Aligned_cols=256  Identities=20%  Similarity=0.247  Sum_probs=197.1

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|.+.+.||+|+||.||+|.+.  +..||||++.....   .            ....+.+.+|+.+++.+    +|||
T Consensus        17 ~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~---~------------~~~~~~~~~Ei~~l~~l----~h~~   77 (345)
T cd07877          17 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQ---S------------IIHAKRTYRELRLLKHM----KHEN   77 (345)
T ss_pred             CceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcch---h------------hHHHHHHHHHHHHHHHc----CCCc
Confidence            88999999999999999999875  78999999843110   0            00123355688999887    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      |+++++++....                      ........++++++++++|.+++...  .+++..+..++.|+++||
T Consensus        78 iv~~~~~~~~~~----------------------~~~~~~~~~lv~~~~~~~L~~~~~~~--~l~~~~~~~i~~qi~~aL  133 (345)
T cd07877          78 VIGLLDVFTPAR----------------------SLEEFNDVYLVTHLMGADLNNIVKCQ--KLTDDHVQFLIYQILRGL  133 (345)
T ss_pred             ccceeeeeeecc----------------------cccccccEEEEehhcccCHHHHHhcC--CCCHHHHHHHHHHHHHHH
Confidence            999999886532                      11112247899999999999888654  799999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN  433 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~  433 (588)
                      .|||++||+||||||+||+++.+     +.+||+|||+++......        ....||+.|+|||++.+...     .
T Consensus       134 ~~LH~~~ivH~dlkp~NIll~~~-----~~~kl~dfg~~~~~~~~~--------~~~~~~~~y~aPE~~~~~~~-----~  195 (345)
T cd07877         134 KYIHSADIIHRDLKPSNLAVNED-----CELKILDFGLARHTDDEM--------TGYVATRWYRAPEIMLNWMH-----Y  195 (345)
T ss_pred             HHHHHCCeeecCCChHHEEEcCC-----CCEEEecccccccccccc--------cccccCCCccCHHHHhCccC-----C
Confidence            99999999999999999999987     789999999987643211        13468899999999865321     3


Q ss_pred             CCcCchhhHHHHHHHHhcCCCCCcccccccccc----------------------------ccccC-----CCCCCccHH
Q psy4039         434 YSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE----------------------------VNALP-----QLNTNVPEV  480 (588)
Q Consensus       434 ~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~----------------------------~~~~~-----~~~~~~~~~  480 (588)
                      +.++|||||||++|||++|+.||..........                            ....+     ......+++
T Consensus       196 ~~~~DvwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (345)
T cd07877         196 NQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPL  275 (345)
T ss_pred             CchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHhhcccHhHHHHHHHhcccCCcchhhhcCCCCHH
Confidence            468999999999999999999996421100000                            00000     011245788


Q ss_pred             HHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccCCC
Q psy4039         481 MRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGAT  521 (588)
Q Consensus       481 l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~~  521 (588)
                      +.++|.+||+.||.+||++.+++.         |||++...
T Consensus       276 ~~~li~~~L~~dp~~R~t~~e~l~---------h~~f~~~~  307 (345)
T cd07877         276 AVDLLEKMLVLDSDKRITAAQALA---------HAYFAQYH  307 (345)
T ss_pred             HHHHHHHHcCCChhhcCCHHHHhc---------ChhhhhcC
Confidence            999999999999999999999999         99998433

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=100.00  E-value=5.5e-37  Score=316.30  Aligned_cols=249  Identities=24%  Similarity=0.355  Sum_probs=196.2

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ..|+....||+|+||.||+|.+.  ++.||||.+.....                 ...+.+.+|+.++..+    .|||
T Consensus        21 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~-----------------~~~~~~~~e~~~l~~l----~hp~   79 (297)
T cd06659          21 SLLENYIKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQ-----------------QRRELLFNEVVIMRDY----QHQN   79 (297)
T ss_pred             hhHHhhhhcCCCCceeEEEEEEcCCCCEEEEEEEEeccc-----------------chHHHHHHHHHHHHhC----CCCc
Confidence            44555668999999999999885  78999999843211                 0123455688888877    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++++....                            ..+++|||+ +++|.+++...  .+++..+..++.|++.|
T Consensus        80 i~~~~~~~~~~~----------------------------~~~iv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~qi~~~  129 (297)
T cd06659          80 VVEMYKSYLVGE----------------------------ELWVLMEFLQGGALTDIVSQT--RLNEEQIATVCESVLQA  129 (297)
T ss_pred             hhhhhhheeeCC----------------------------eEEEEEecCCCCCHHHHHhhc--CCCHHHHHHHHHHHHHH
Confidence            999999887631                            489999999 57999887654  78999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||+++|+||||||+||+++.+     +.+||+|||++........     ......|++.|+|||++.+..      
T Consensus       130 L~~LH~~~ivH~dl~p~Nill~~~-----~~~kL~dfg~~~~~~~~~~-----~~~~~~~~~~y~aPE~~~~~~------  193 (297)
T cd06659         130 LCYLHSQGVIHRDIKSDSILLTLD-----GRVKLSDFGFCAQISKDVP-----KRKSLVGTPYWMAPEVISRTP------  193 (297)
T ss_pred             HHHHHhCCeecCCCCHHHeEEccC-----CcEEEeechhHhhcccccc-----cccceecCccccCHHHHccCC------
Confidence            999999999999999999999987     7999999999876543211     112356899999999997654      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcccccccccc-----ccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHh
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE-----VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~-----~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~  507 (588)
                      .+.++|||||||++|||++|+.||..........     .......+..+++++.+++.+||+.+|.+||+++++++   
T Consensus       194 ~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~P~~Rps~~~ll~---  270 (297)
T cd06659         194 YGTEVDIWSLGIMVIEMVDGEPPYFSDSPVQAMKRLRDSPPPKLKNAHKISPVLRDFLERMLTREPQERATAQELLD---  270 (297)
T ss_pred             CCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhccCCCCccccCCCCHHHHHHHHHHhcCCcccCcCHHHHhh---
Confidence            4578999999999999999999997532111110     01111223467889999999999999999999999999   


Q ss_pred             hhhhcCCccccCC
Q psy4039         508 LYLWAPKHWLYGA  520 (588)
Q Consensus       508 ~~~~~~h~w~~~~  520 (588)
                            |||+...
T Consensus       271 ------~~~~~~~  277 (297)
T cd06659         271 ------HPFLLQT  277 (297)
T ss_pred             ------ChhhccC
Confidence                  9998733

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>KOG4645|consensus

Probab=100.00  E-value=1.1e-38  Score=359.13  Aligned_cols=250  Identities=27%  Similarity=0.296  Sum_probs=204.5

Q ss_pred             CeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCce
Q psy4039         197 DIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNV  274 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNI  274 (588)
                      ++..+..||.|.||.||.|...  |.-.|||-+...+..               ......+.+|..++..+    +|||+
T Consensus      1236 rWqrg~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~---------------~k~~~~i~eEm~vlE~l----nHpNl 1296 (1509)
T KOG4645|consen 1236 RWQRGNFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSD---------------HKTFKLIAEEMKVLEGL----NHPNL 1296 (1509)
T ss_pred             eeccccccCCcceeeeEEeecCCccchhhhhhhhcCccc---------------cccCcchHHHHHHHHhc----cCccc
Confidence            3455778999999999999987  888999988533221               11344566799999987    99999


Q ss_pred             EEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         275 VVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       275 V~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      |++||+-.+..                            .++|.|||| +|+|.+.+...+ ..++.....+..|++.|+
T Consensus      1297 V~YyGVEvHRe----------------------------kv~IFMEyC~~GsLa~ll~~gr-i~dE~vt~vyt~qll~gl 1347 (1509)
T KOG4645|consen 1297 VRYYGVEVHRE----------------------------KVYIFMEYCEGGSLASLLEHGR-IEDEMVTRVYTKQLLEGL 1347 (1509)
T ss_pred             cccCceeecHH----------------------------HHHHHHHHhccCcHHHHHHhcc-hhhhhHHHHHHHHHHHHH
Confidence            99999866532                            388999999 789999987543 688888999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCC-ccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGL-SMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~-~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      .|||++|||||||||.||+++.+     +.+|++|||.|..+.... .++  .......||+.|||||++.+..+.-   
T Consensus      1348 a~LH~~gIVHRDIK~aNI~Ld~~-----g~iK~~DFGsa~ki~~~~~~~~--~el~~~~GT~~YMAPEvit~t~~kG--- 1417 (1509)
T KOG4645|consen 1348 AYLHEHGIVHRDIKPANILLDFN-----GLIKYGDFGSAVKIKNNAQTMP--GELQSMMGTPMYMAPEVITGTKGKG--- 1417 (1509)
T ss_pred             HHHHhcCceecCCCccceeeecC-----CcEEeecccceeEecCchhcCC--HHHHhhcCCchhcCchhhcccccCC---
Confidence            99999999999999999999998     899999999999876642 121  2223578999999999998765311   


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcccc----ccccccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHH
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSA----RNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAAT  504 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~----~~~~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~  504 (588)
                      ...+.||||+||++.||+||+.||..-.    .......+..|++|..++.+-++++.+||+.||.+|.++.|+++
T Consensus      1418 ~~~A~DiWslGCVVlEM~tGkrPW~~~dne~aIMy~V~~gh~Pq~P~~ls~~g~dFle~Cl~~dP~~Rw~~~qlle 1493 (1509)
T KOG4645|consen 1418 HGGAADIWSLGCVVLEMATGKRPWAELDNEWAIMYHVAAGHKPQIPERLSSEGRDFLEHCLEQDPKMRWTASQLLE 1493 (1509)
T ss_pred             CCcchhhhcccceEEEeecCCCchhhccchhHHHhHHhccCCCCCchhhhHhHHHHHHHHHhcCchhhhHHHHHHH
Confidence            3357899999999999999999997632    22233446788999999999999999999999999999999888

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=100.00  E-value=1.8e-36  Score=308.61  Aligned_cols=243  Identities=23%  Similarity=0.331  Sum_probs=192.0

Q ss_pred             ecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEEeeee
Q psy4039         204 IAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAF  281 (588)
Q Consensus       204 IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l~~~~  281 (588)
                      ||+|+||+||+|.+.  ++.||+|.+.......              ......+.+|+.+++.+    +||||+++++++
T Consensus         1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~--------------~~~~~~~~~e~~~l~~l----~~~~i~~~~~~~   62 (277)
T cd05577           1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKK--------------RKGEQMALNEKKILEKV----SSRFIVSLAYAF   62 (277)
T ss_pred             CCCCCceeEEEEEEcCCCcEEEEEEEehhhhhh--------------hhhhHHHHHHHHHHHhC----CCCCEeeeeeEE
Confidence            699999999999876  7899999985321100              01123345688899887    899999999988


Q ss_pred             eccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhC
Q psy4039         282 TDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC-AQLSMHERVLLFTQLLEGVTHLNMH  359 (588)
Q Consensus       282 ~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~-~~l~~~~~~~i~~ql~~gL~yLH~~  359 (588)
                      ...                            ...++||||+ +++|.+++.... ..+++.++..++.|++.||.|||++
T Consensus        63 ~~~----------------------------~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~  114 (277)
T cd05577          63 ETK----------------------------DDLCLVMTLMNGGDLKYHIYNVGEPGFPEARAIFYAAQIICGLEHLHQR  114 (277)
T ss_pred             ecC----------------------------CeEEEEEecCCCCcHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            753                            1489999999 579999998653 3689999999999999999999999


Q ss_pred             CceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCCcCch
Q psy4039         360 RTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDA  439 (588)
Q Consensus       360 ~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDV  439 (588)
                      ||+||||||+||+++.+     +.++|+|||.+.........      ....|+..|+|||++.+..      ++.++||
T Consensus       115 ~i~H~di~p~Nil~~~~-----~~~~l~dfg~~~~~~~~~~~------~~~~~~~~y~~PE~~~~~~------~~~~~Di  177 (277)
T cd05577         115 RIVYRDLKPENVLLDDH-----GNVRISDLGLAVELKGGKKI------KGRAGTPGYMAPEVLQGEV------YDFSVDW  177 (277)
T ss_pred             CcccCCCCHHHEEECCC-----CCEEEccCcchhhhccCCcc------ccccCCCCcCCHHHhcCCC------CCchhhh
Confidence            99999999999999987     78999999998765432111      1345788999999987654      4468999


Q ss_pred             hhHHHHHHHHhcCCCCCcccccccc------ccccccCCCCCCccHHHHHHHHHhhhhCCCCCC-----CHHHHHHHHhh
Q psy4039         440 WTAGTVAYEIFGHDNPFYQSARNTD------YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRP-----SAELAATVCQL  508 (588)
Q Consensus       440 wS~Gvil~ElltG~~Pf~~~~~~~~------~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rp-----s~~e~l~~L~~  508 (588)
                      |||||++|+|++|+.||........      .........+..+++++.++|.+||+.||.+||     ++.++++    
T Consensus       178 ~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~ll~----  253 (277)
T cd05577         178 FALGCTLYEMIAGRSPFRQRKEKVEKEELKRRTLEMAVEYPDKFSPEAKDLCEALLQKDPEKRLGCRGGSADEVRE----  253 (277)
T ss_pred             HHHHHHHHHHhhCCCCCCCCcccccHHHHHhccccccccCCccCCHHHHHHHHHHccCChhHccCCCcccHHHHHh----
Confidence            9999999999999999965322111      011123345567899999999999999999999     8888888    


Q ss_pred             hhhcCCcccc
Q psy4039         509 YLWAPKHWLY  518 (588)
Q Consensus       509 ~~~~~h~w~~  518 (588)
                           |||+.
T Consensus       254 -----h~~~~  258 (277)
T cd05577         254 -----HPLFK  258 (277)
T ss_pred             -----Chhhh
Confidence                 99996

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=100.00  E-value=2.3e-36  Score=309.63  Aligned_cols=257  Identities=21%  Similarity=0.349  Sum_probs=199.7

Q ss_pred             CeEEeeeecccCceeEEEEEE-----CCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCC
Q psy4039         197 DIQIGKFIAKGTNAVVYEATF-----RGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPH  271 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~~-----~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~H  271 (588)
                      +|++.+.||+|+||.||.+..     .|..||+|++......             ......+.+.+|+.+++.+   ..|
T Consensus         1 ~y~~~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~-------------~~~~~~~~~~~e~~~l~~l---~~~   64 (290)
T cd05613           1 NFELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIV-------------QKAKTTEHTRTERQVLEHI---RQS   64 (290)
T ss_pred             CceeeeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhh-------------hcchHHHHHHHHHHHHHhc---ccC
Confidence            478899999999999999987     3788999998531110             0011223456788888877   469


Q ss_pred             CceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy4039         272 PNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLL  350 (588)
Q Consensus       272 pNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~  350 (588)
                      |||+++++++...                            ...++||||+ +++|.+++.... .+++..+..++.|++
T Consensus        65 ~~i~~~~~~~~~~----------------------------~~~~lv~e~~~~~~L~~~l~~~~-~l~~~~~~~~~~qi~  115 (290)
T cd05613          65 PFLVTLHYAFQTD----------------------------TKLHLILDYINGGELFTHLSQRE-RFKEQEVQIYSGEIV  115 (290)
T ss_pred             CChhceeeEeecC----------------------------CeEEEEEecCCCCcHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            9999999888752                            2489999999 579999998764 789999999999999


Q ss_pred             HHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCcc
Q psy4039         351 EGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFS  430 (588)
Q Consensus       351 ~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~  430 (588)
                      +||.|||+.|++||||||+|||++.+     +.+||+|||+++........    ......|+..|+|||.+......  
T Consensus       116 ~al~~lH~~~i~H~dl~p~nil~~~~-----~~~kl~dfg~~~~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~--  184 (290)
T cd05613         116 LALEHLHKLGIIYRDIKLENILLDSN-----GHVVLTDFGLSKEFHEDEVE----RAYSFCGTIEYMAPDIVRGGDGG--  184 (290)
T ss_pred             HHHHHHHhCCeeccCCCHHHeEECCC-----CCEEEeeCccceeccccccc----ccccccCCcccCChhhccCCCCC--
Confidence            99999999999999999999999987     78999999999775432111    11135689999999998654322  


Q ss_pred             CCCCCcCchhhHHHHHHHHhcCCCCCcccccccc------ccccccCCCCCCccHHHHHHHHHhhhhCCCCCC-----CH
Q psy4039         431 FVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD------YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRP-----SA  499 (588)
Q Consensus       431 ~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~------~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rp-----s~  499 (588)
                        ...++||||||+++|+|++|..||........      ......++.+..+++.+.+++.+||+.||++||     ++
T Consensus       185 --~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~~p~~R~~~~~~~~  262 (290)
T cd05613         185 --HDKAVDWWSMGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEPPYPQEMSALAKDIIQRLLMKDPKKRLGCGPSDA  262 (290)
T ss_pred             --CCccccHHHHHHHHHHHhcCCCCCCcCCccccHHHHHHHhhccCCCCCccCCHHHHHHHHHHhcCCHHHhcCCCCCCH
Confidence              34679999999999999999999964211111      011123345667889999999999999999997     88


Q ss_pred             HHHHHHHhhhhhcCCccccCC
Q psy4039         500 ELAATVCQLYLWAPKHWLYGA  520 (588)
Q Consensus       500 ~e~l~~L~~~~~~~h~w~~~~  520 (588)
                      +++++         |||++..
T Consensus       263 ~~l~~---------~~~~~~~  274 (290)
T cd05613         263 DEIKK---------HPFFQKI  274 (290)
T ss_pred             HHHHc---------CcccccC
Confidence            99888         9999754

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=100.00  E-value=2.9e-36  Score=313.64  Aligned_cols=255  Identities=23%  Similarity=0.279  Sum_probs=198.9

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ..|+..+.||+|+||.||++.+.  +..||+|.+.........              ....+.+|+.+++.+    +|||
T Consensus        25 ~~f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~--------------~~~~~~~e~~~l~~l----~h~~   86 (317)
T cd06635          25 KLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNE--------------KWQDIIKEVKFLQRI----KHPN   86 (317)
T ss_pred             hhhhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchH--------------HHHHHHHHHHHHHhC----CCCC
Confidence            44778889999999999999985  789999998532211110              112355688888887    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      ++++++++.+..                            ..++||||+.|+|.+++......+++.++..++.|++.||
T Consensus        87 iv~~~~~~~~~~----------------------------~~~lv~e~~~g~l~~~~~~~~~~l~~~~~~~i~~~i~~~l  138 (317)
T cd06635          87 SIEYKGCYLREH----------------------------TAWLVMEYCLGSASDLLEVHKKPLQEVEIAAITHGALQGL  138 (317)
T ss_pred             EEEEEEEEeeCC----------------------------eEEEEEeCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            999999987632                            3899999999899888876655799999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN  433 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~  433 (588)
                      .|||+++|+||||+|+||+++.+     +.++|+|||++......         ....|++.|+|||++.....   ...
T Consensus       139 ~~lH~~~i~H~dL~p~Nil~~~~-----~~~kl~dfg~~~~~~~~---------~~~~~~~~y~aPE~~~~~~~---~~~  201 (317)
T cd06635         139 AYLHSHNMIHRDIKAGNILLTEP-----GQVKLADFGSASIASPA---------NSFVGTPYWMAPEVILAMDE---GQY  201 (317)
T ss_pred             HHHHHCCcccCCCCcccEEECCC-----CCEEEecCCCccccCCc---------ccccCCccccChhhhhcCCC---CCC
Confidence            99999999999999999999887     78999999998654321         13468899999999853211   014


Q ss_pred             CCcCchhhHHHHHHHHhcCCCCCccccccccc---c-ccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhh
Q psy4039         434 YSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY---E-VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLY  509 (588)
Q Consensus       434 ~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~---~-~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~  509 (588)
                      +.++|||||||++|||++|..||.........   . ....+.....+++.+++++.+||+.+|.+||++.++++     
T Consensus       202 ~~~~Dv~slGvil~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~-----  276 (317)
T cd06635         202 DGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPTLQSNEWSDYFRNFVDSCLQKIPQDRPTSEELLK-----  276 (317)
T ss_pred             CccccHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHhccCCCCCCccccHHHHHHHHHHccCCcccCcCHHHHHh-----
Confidence            57899999999999999999998764221111   1 11111223457888999999999999999999999998     


Q ss_pred             hhcCCccccCCCC
Q psy4039         510 LWAPKHWLYGATP  522 (588)
Q Consensus       510 ~~~~h~w~~~~~~  522 (588)
                          |+|+....+
T Consensus       277 ----~~~~~~~~~  285 (317)
T cd06635         277 ----HMFVLRERP  285 (317)
T ss_pred             ----ChhhhccCc
Confidence                999874433

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=100.00  E-value=2.3e-36  Score=309.62  Aligned_cols=250  Identities=24%  Similarity=0.358  Sum_probs=196.8

Q ss_pred             CeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCce
Q psy4039         197 DIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNV  274 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNI  274 (588)
                      .|...+.||+|++|.||++.+.  ++.||+|.+.....                 ...+.+.+|+.+++.+    .||||
T Consensus        20 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~-----------------~~~~~~~~e~~~l~~~----~h~~v   78 (285)
T cd06648          20 YLDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQ-----------------QRRELLFNEVVIMRDY----QHPNI   78 (285)
T ss_pred             hhhcceEeccCCCeEEEEEEECCCCCEEEEEEEeccch-----------------hHHHHHHHHHHHHHHc----CCCCh
Confidence            4555679999999999999875  78899998842110                 0122355688888887    89999


Q ss_pred             EEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         275 VVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       275 V~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      +++++++....                            ..++++||+ +++|.+++...  .+++.++..++.|++.||
T Consensus        79 v~~~~~~~~~~----------------------------~~~~v~e~~~~~~L~~~~~~~--~~~~~~~~~~~~ql~~~l  128 (285)
T cd06648          79 VEMYSSYLVGD----------------------------ELWVVMEFLEGGALTDIVTHT--RMNEEQIATVCLAVLKAL  128 (285)
T ss_pred             heEEEEEEcCC----------------------------eEEEEEeccCCCCHHHHHHhC--CCCHHHHHHHHHHHHHHH
Confidence            99999887521                            489999999 67999999873  799999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN  433 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~  433 (588)
                      .|||++||+||||||+||+++.+     +.++|+|||++........     ......|++.|+|||.+.+..      +
T Consensus       129 ~~lH~~~i~H~dl~p~Nil~~~~-----~~~~l~d~g~~~~~~~~~~-----~~~~~~~~~~y~aPE~~~~~~------~  192 (285)
T cd06648         129 SFLHAQGVIHRDIKSDSILLTSD-----GRVKLSDFGFCAQVSKEVP-----RRKSLVGTPYWMAPEVISRLP------Y  192 (285)
T ss_pred             HHHHhCCeecCCCChhhEEEcCC-----CcEEEcccccchhhccCCc-----ccccccCCccccCHHHhcCCC------C
Confidence            99999999999999999999987     7999999998876433211     111356899999999987654      4


Q ss_pred             CCcCchhhHHHHHHHHhcCCCCCccccccccc---cccccCC--CCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhh
Q psy4039         434 YSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY---EVNALPQ--LNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQL  508 (588)
Q Consensus       434 ~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~---~~~~~~~--~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~  508 (588)
                      +.++|||||||++|||++|..||.........   .....+.  .+..++..+.+++.+||+.||++||++.++++    
T Consensus       193 ~~~~Dv~slGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~----  268 (285)
T cd06648         193 GTEVDIWSLGIMVIEMVDGEPPYFNEPPLQAMKRIRDNLPPKLKNLHKVSPRLRSFLDRMLVRDPAQRATAAELLN----  268 (285)
T ss_pred             CCcccHHHHHHHHHHHHhCCCCCcCCCHHHHHHHHHhcCCCCCcccccCCHHHHHHHHHHcccChhhCcCHHHHcc----
Confidence            57899999999999999999999763211111   1111111  12347889999999999999999999999998    


Q ss_pred             hhhcCCccccCCCC
Q psy4039         509 YLWAPKHWLYGATP  522 (588)
Q Consensus       509 ~~~~~h~w~~~~~~  522 (588)
                           |+|++...+
T Consensus       269 -----~~~~~~~~~  277 (285)
T cd06648         269 -----HPFLAKAGP  277 (285)
T ss_pred             -----CcccccCCC
Confidence                 999986554

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>KOG0666|consensus

Probab=100.00  E-value=8.5e-38  Score=306.48  Aligned_cols=262  Identities=24%  Similarity=0.265  Sum_probs=202.6

Q ss_pred             CCeEEeeeecccCceeEEEEEEC------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCC
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLP  269 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~  269 (588)
                      ..|+..+.||+|+||.||+|...      ...+|||+++.....               ..-....++|+.+++++    
T Consensus        24 ~~ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~---------------tGiS~SAcREiaL~REl----   84 (438)
T KOG0666|consen   24 FEYEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDG---------------TGISMSACREIALLREL----   84 (438)
T ss_pred             HHhhccceecccccceeeEeeeccCCcccchhhHHHHHhccCCC---------------CCcCHHHHHHHHHHHHh----
Confidence            77899999999999999999665      347888887432110               01223457899999998    


Q ss_pred             CCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHh----cCCCCHHHHHHH
Q psy4039         270 PHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRER----CAQLSMHERVLL  345 (588)
Q Consensus       270 ~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~----~~~l~~~~~~~i  345 (588)
                      +|||||.|..+|...                           ...+++++||.+.+|.+.|+-+    ...++...+..|
T Consensus        85 ~h~nvi~Lv~Vfl~~---------------------------d~~v~l~fdYAEhDL~~II~fHr~~~~~~lp~~mvKsi  137 (438)
T KOG0666|consen   85 KHPNVISLVKVFLSH---------------------------DKKVWLLFDYAEHDLWHIIKFHRASKAKQLPRSMVKSI  137 (438)
T ss_pred             cCCcchhHHHHHhcc---------------------------CceEEEEehhhhhhHHHHHHHhccchhccCCHHHHHHH
Confidence            999999999888652                           2259999999999999999743    246899999999


Q ss_pred             HHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcC
Q psy4039         346 FTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALAT  425 (588)
Q Consensus       346 ~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~  425 (588)
                      +.||+.|+.|||++=|+||||||.|||+..+.+.. +.+||+|||+||.+.+....-++.  ...+-|+.|.|||++.+.
T Consensus       138 lwQil~Gv~YLH~NWvlHRDLKPaNIlvmgdgper-G~VKIaDlGlaR~~~~plkpl~s~--d~VVVTiWYRAPELLLGa  214 (438)
T KOG0666|consen  138 LWQILDGVHYLHSNWVLHRDLKPANILVMGDGPER-GRVKIADLGLARLFNNPLKPLASL--DPVVVTIWYRAPELLLGA  214 (438)
T ss_pred             HHHHHhhhHHHhhhheeeccCCcceEEEeccCCcc-CeeEeecccHHHHhhccccccccC--CceEEEEEecChHHhccc
Confidence            99999999999999999999999999999876554 899999999999987754432222  256789999999999987


Q ss_pred             CCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccc----c---------cc------ccccCCC-------------
Q psy4039         426 PGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNT----D---------YE------VNALPQL-------------  473 (588)
Q Consensus       426 ~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~----~---------~~------~~~~~~~-------------  473 (588)
                      ..     |+.+.||||+|||+.||++-.+.|.+.....    .         ++      ...+|.+             
T Consensus       215 ~h-----YT~AiDvWAiGCIfaElLtl~PlF~g~E~k~~~~~Pfq~dQl~rIf~vLG~Pt~~~Wp~lkk~Pe~q~~ls~f  289 (438)
T KOG0666|consen  215 RH-----YTKAIDVWAIGCIFAELLTLEPLFKGREEKIKTKNPFQHDQLDRIFEVLGTPTDKDWPDLKKMPEYQTLLSDF  289 (438)
T ss_pred             cc-----ccchhhhHHHHHHHHHHHccCccccchhhhcccCCCchHHHHHHHHHHcCCCccccchhhhhCcchHHHHHHh
Confidence            63     5567899999999999999888876521000    0         00      0111110             


Q ss_pred             ----C------------CCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccCC
Q psy4039         474 ----N------------TNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGA  520 (588)
Q Consensus       474 ----~------------~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~  520 (588)
                          .            ..-++...+|+.+||+.||.+|.|++++++         |++|...
T Consensus       290 ~~~~~~n~sL~~~~~~~k~k~~~a~~LL~klL~yDP~kRIta~qAle---------h~yF~~d  343 (438)
T KOG0666|consen  290 RRHYYDNVSLHKYYHKHKVKDPSALDLLQKLLTYDPIKRITAEQALE---------HPYFTED  343 (438)
T ss_pred             HHhhcCcchHHHHHHHhcCCCchHHHHHHHHhccCchhhccHHHHhc---------ccccccC
Confidence                0            112344789999999999999999999999         9999833

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=100.00  E-value=3.3e-36  Score=302.97  Aligned_cols=255  Identities=25%  Similarity=0.310  Sum_probs=198.3

Q ss_pred             CeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCce
Q psy4039         197 DIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNV  274 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNI  274 (588)
                      +|++.+.||+|+||.||+|.+.  ++.||+|.+......   .            ...+.+.+|+.+++.+    +|+||
T Consensus         1 ~y~~~~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~---~------------~~~~~~~~e~~~~~~l----~~~~i   61 (264)
T cd06626           1 RWQRGNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDND---P------------KTIKEIADEMKVLELL----KHPNL   61 (264)
T ss_pred             CceeeeEeecCCCcEEEEEEECCCCcEEEEEEEECcccc---h------------HHHHHHHHHHHHHHhC----CCCCh
Confidence            4888999999999999999875  789999998643211   0            0223456788888887    99999


Q ss_pred             EEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         275 VVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       275 V~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      +++++++.+..                            ..++|+||+ +++|.+++.... .+++..+..++.|++.||
T Consensus        62 ~~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~i~~~i~~~l  112 (264)
T cd06626          62 VKYYGVEVHRE----------------------------KVYIFMEYCSGGTLEELLEHGR-ILDEHVIRVYTLQLLEGL  112 (264)
T ss_pred             hheeeeEecCC----------------------------EEEEEEecCCCCcHHHHHhhcC-CCChHHHHHHHHHHHHHH
Confidence            99999876521                            489999999 589999998753 689999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN  433 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~  433 (588)
                      .|||+.||+|+||||+||+++++     +.+||+|||++.......... ........|++.|+|||++.+...   ...
T Consensus       113 ~~lh~~~i~H~dl~~~nil~~~~-----~~~kl~d~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~PE~~~~~~~---~~~  183 (264)
T cd06626         113 AYLHSHGIVHRDIKPANIFLDHN-----GVIKLGDFGCAVKLKNNTTTM-GEEVQSLAGTPAYMAPEVITGGKG---KGH  183 (264)
T ss_pred             HHHHHCCcccCCCCHHHEEECCC-----CCEEEcccccccccCCCCCcc-cccccCCcCCcCccChhhccCCCC---CCC
Confidence            99999999999999999999987     789999999998764422211 100113568899999999876541   013


Q ss_pred             CCcCchhhHHHHHHHHhcCCCCCcccccccc----ccccccCCCCC--CccHHHHHHHHHhhhhCCCCCCCHHHHHHHHh
Q psy4039         434 YSKSDAWTAGTVAYEIFGHDNPFYQSARNTD----YEVNALPQLNT--NVPEVMRRLVAKLLENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       434 ~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~----~~~~~~~~~~~--~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~  507 (588)
                      ..++||||||+++|||++|..||........    ......+.++.  .+++.+.+++.+||+.||.+|||+++++.   
T Consensus       184 ~~~~Dv~s~G~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~i~~---  260 (264)
T cd06626         184 GRAADIWSLGCVVLEMATGKRPWSELDNEFQIMFHVGAGHKPPIPDSLQLSPEGKDFLDRCLESDPKKRPTASELLQ---  260 (264)
T ss_pred             CcccchHHHHHHHHHHHhCCCCccCCcchHHHHHHHhcCCCCCCCcccccCHHHHHHHHHHccCCcccCCCHHHHhc---
Confidence            4689999999999999999999965321111    11122233333  34889999999999999999999999999   


Q ss_pred             hhhhcCCccc
Q psy4039         508 LYLWAPKHWL  517 (588)
Q Consensus       508 ~~~~~~h~w~  517 (588)
                            |||+
T Consensus       261 ------~~~~  264 (264)
T cd06626         261 ------HPFV  264 (264)
T ss_pred             ------CCCC
Confidence                  9996

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>PHA02882 putative serine/threonine kinase; Provisional

Probab=100.00  E-value=3.2e-36  Score=310.16  Aligned_cols=268  Identities=13%  Similarity=0.104  Sum_probs=185.0

Q ss_pred             cccCCeEEeeeecccCceeEEEEEECC-----eeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcC
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFRG-----VEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVEN  267 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~g-----~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~  267 (588)
                      +.-++|++.+.||+|+||+||+|.+.+     ..+|+|+.....   ... .......  ..........+...+..   
T Consensus         9 i~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~---~~~-~~e~~~~--~~~~~~~~~~~~~~~~~---   79 (294)
T PHA02882          9 ITGKEWKIDKLIGCGGFGCVYETQCASDHCINNQAVAKIENLEN---ETI-VMETLVY--NNIYDIDKIALWKNIHN---   79 (294)
T ss_pred             cCCCceEEeeEEecCCCceEEEEEEcCCcccccceEEEeccccC---Cch-hhHHHHH--HhhhhHHHHHHHHHhcc---
Confidence            334789999999999999999999863     356776542111   100 0000000  00001111112222333   


Q ss_pred             CCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHH
Q psy4039         268 LPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFT  347 (588)
Q Consensus       268 l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~  347 (588)
                       ..|+||+++++++....                        ......+++|+++..++.+.+.... ..++..+..++.
T Consensus        80 -~~h~~i~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~  133 (294)
T PHA02882         80 -IDHLGIPKYYGCGSFKR------------------------CRMYYRFILLEKLVENTKEIFKRIK-CKNKKLIKNIMK  133 (294)
T ss_pred             -CCCCCCCcEEEeeeEec------------------------CCceEEEEEEehhccCHHHHHHhhc-cCCHHHHHHHHH
Confidence             38999999998765521                        1112368889988777877776542 568889999999


Q ss_pred             HHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCC-ccccc-cccccccCCccccchhHHhcC
Q psy4039         348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGL-SMQYS-SADIELGGNVALMAPEVALAT  425 (588)
Q Consensus       348 ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~-~~~~~-~~~~~~~GT~~Y~APE~l~~~  425 (588)
                      |+++||.|||+++|+||||||+|||++.+     +.++|+|||+|+...... ..... .......||+.|+|||+..+.
T Consensus       134 qi~~~l~~lH~~~iiHrDiKp~Nill~~~-----~~~~l~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~  208 (294)
T PHA02882        134 DMLTTLEYIHEHGISHGDIKPENIMVDGN-----NRGYIIDYGIASHFIIHGKHIEYSKEQKDLHRGTLYYAGLDAHNGA  208 (294)
T ss_pred             HHHHHHHHHHhCCeecCCCCHHHEEEcCC-----CcEEEEEcCCceeeccCCcccccccccccccCCCccccCHHHhCCC
Confidence            99999999999999999999999999877     789999999998754311 11111 111235699999999998766


Q ss_pred             CCCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccc--------c-ccccc-CCCCCCccHHHHHHHHHhhhhCCCC
Q psy4039         426 PGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD--------Y-EVNAL-PQLNTNVPEVMRRLVAKLLENDPSD  495 (588)
Q Consensus       426 ~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~--------~-~~~~~-~~~~~~~~~~l~~Li~~~L~~dP~~  495 (588)
                      .      ++.++|||||||++|||++|..||.+......        + ..... ......+|+++.+++..||..+|++
T Consensus       209 ~------~~~~~DiwSlG~~l~el~~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (294)
T PHA02882        209 C------VTRRGDLESLGYCMLKWAGIKLPWKGFGHNGNLIHAAKCDFIKRLHEGKIKIKNANKFIYDFIECVTKLSYEE  282 (294)
T ss_pred             C------CCcHHHHHHHHHHHHHHHhCCCCCCccccchHHHHHhHHHHHHHhhhhhhccCCCCHHHHHHHHHHHhCCCCC
Confidence            5      45789999999999999999999976421111        0 00000 0123457899999999999999999


Q ss_pred             CCCHHHHHHHH
Q psy4039         496 RPSAELAATVC  506 (588)
Q Consensus       496 Rps~~e~l~~L  506 (588)
                      ||+++++.+.+
T Consensus       283 rp~~~~l~~~~  293 (294)
T PHA02882        283 KPDYDALIKIF  293 (294)
T ss_pred             CCCHHHHHHhh
Confidence            99999988743

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=1.2e-36  Score=309.91  Aligned_cols=241  Identities=20%  Similarity=0.248  Sum_probs=181.6

Q ss_pred             eecccCceeEEEEEEC--------------------------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhh
Q psy4039         203 FIAKGTNAVVYEATFR--------------------------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRL  256 (588)
Q Consensus       203 ~IG~G~fG~Vy~a~~~--------------------------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~  256 (588)
                      .||+|+||.||+|.+.                          ...||+|++....     ..            ....+.
T Consensus         2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~-----~~------------~~~~~~   64 (274)
T cd05076           2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPSH-----RD------------IALAFF   64 (274)
T ss_pred             CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChHH-----HH------------HHHHHH
Confidence            5999999999999853                          2468999873210     00            123355


Q ss_pred             hHHHHHhhhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcC
Q psy4039         257 NEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCA  335 (588)
Q Consensus       257 ~Ei~il~~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~  335 (588)
                      +|+.+++.+    +||||+++++++.+..                            ..++||||+ +|+|..++.....
T Consensus        65 ~~~~~~~~l----~h~niv~~~~~~~~~~----------------------------~~~lv~ey~~~g~L~~~l~~~~~  112 (274)
T cd05076          65 ETASLMSQV----SHIHLAFVHGVCVRGS----------------------------ENIMVEEFVEHGPLDVCLRKEKG  112 (274)
T ss_pred             HHHHHHhcC----CCCCeeeEEEEEEeCC----------------------------ceEEEEecCCCCcHHHHHHhcCC
Confidence            677788776    9999999999987632                            389999999 6899999977555


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCC--CCCCceeeeccccccccCCCCccccccccccccCC
Q psy4039         336 QLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSED--NTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGN  413 (588)
Q Consensus       336 ~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~--~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT  413 (588)
                      .+++..+..++.|+++||+|||+++|+||||||+|||++....  .....+|++|||++......         ....++
T Consensus       113 ~~~~~~~~~i~~qi~~~l~~lH~~~iiH~dlkp~Nill~~~~~~~~~~~~~kl~d~g~~~~~~~~---------~~~~~~  183 (274)
T cd05076         113 RVPVAWKITVAQQLASALSYLEDKNLVHGNVCAKNILLARLGLAEGTSPFIKLSDPGVSFTALSR---------EERVER  183 (274)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHcCCccCCCCCcccEEEeccCcccCccceeeecCCccccccccc---------cccccC
Confidence            7999999999999999999999999999999999999986421  11135899999987543221         123578


Q ss_pred             ccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHh-cCCCCCcccccccccc-ccccCCCCCCccHHHHHHHHHhhhh
Q psy4039         414 VALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIF-GHDNPFYQSARNTDYE-VNALPQLNTNVPEVMRRLVAKLLEN  491 (588)
Q Consensus       414 ~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ell-tG~~Pf~~~~~~~~~~-~~~~~~~~~~~~~~l~~Li~~~L~~  491 (588)
                      +.|+|||.+.+...     .+.++|||||||++|||+ +|..||.......... .......+...++++.++|.+||+.
T Consensus       184 ~~~~aPe~~~~~~~-----~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~  258 (274)
T cd05076         184 IPWIAPECVPGGNS-----LSTAADKWSFGTTLLEICFDGEVPLKERTPSEKERFYEKKHRLPEPSCKELATLISQCLTY  258 (274)
T ss_pred             CcccCchhhcCCCC-----CCcHHHHHHHHHHHHHHHhCCCCCccccChHHHHHHHHhccCCCCCCChHHHHHHHHHccc
Confidence            89999998865321     457899999999999984 7999997643221111 1112233445567899999999999


Q ss_pred             CCCCCCCHHHHHHHH
Q psy4039         492 DPSDRPSAELAATVC  506 (588)
Q Consensus       492 dP~~Rps~~e~l~~L  506 (588)
                      +|++|||+.++++.|
T Consensus       259 ~p~~Rps~~~il~~L  273 (274)
T cd05076         259 EPTQRPSFRTILRDL  273 (274)
T ss_pred             ChhhCcCHHHHHHhh
Confidence            999999999998744

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=100.00  E-value=2.6e-36  Score=301.95  Aligned_cols=244  Identities=25%  Similarity=0.311  Sum_probs=191.4

Q ss_pred             eeecccCceeEEEEEEC-CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEEeee
Q psy4039         202 KFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFA  280 (588)
Q Consensus       202 ~~IG~G~fG~Vy~a~~~-g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l~~~  280 (588)
                      ++||.|+||.||+|.+. ++.||+|.+......                .....+.+|+.+++.+    .||||++++++
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~v~~K~~~~~~~~----------------~~~~~~~~e~~~l~~l----~~~~i~~~~~~   60 (251)
T cd05041           1 EKIGKGNFGDVYKGVLKGNTEVAVKTCRSTLPP----------------DLKRKFLQEAEILKQY----DHPNIVKLIGV   60 (251)
T ss_pred             CccccCCCceEEEEEEeCCCcEEEEeccccCCH----------------HHHHHHHHHHHHHHhC----CCCCeEEEEEE
Confidence            46999999999999987 899999998532211                0123456788888887    89999999998


Q ss_pred             eeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC
Q psy4039         281 FTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMH  359 (588)
Q Consensus       281 ~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yLH~~  359 (588)
                      +.+..                            ..++||||+ +++|.+++......+++..+..++.+++.||.|||++
T Consensus        61 ~~~~~----------------------------~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~lH~~  112 (251)
T cd05041          61 CVQKQ----------------------------PIYIVMELVPGGSLLTFLRKKKNRLTVKKLLQMSLDAAAGMEYLESK  112 (251)
T ss_pred             EecCC----------------------------CeEEEEEcCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            87632                            389999999 6799999987655789999999999999999999999


Q ss_pred             CceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCCcCch
Q psy4039         360 RTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDA  439 (588)
Q Consensus       360 ~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDV  439 (588)
                      +++||||||+|||++.+     +.++|+|||++.....+....   ......++..|+|||++.+..      .+.++||
T Consensus       113 ~i~h~di~p~nili~~~-----~~~~l~d~g~~~~~~~~~~~~---~~~~~~~~~~y~~PE~~~~~~------~~~~~Di  178 (251)
T cd05041         113 NCIHRDLAARNCLVGEN-----NVLKISDFGMSREEEGGIYTV---SDGLKQIPIKWTAPEALNYGR------YTSESDV  178 (251)
T ss_pred             CEehhhcCcceEEEcCC-----CcEEEeeccccccccCCccee---ccccCcceeccCChHhhccCC------CCcchhH
Confidence            99999999999999987     789999999997654322111   111223466899999987654      4578999


Q ss_pred             hhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHh
Q psy4039         440 WTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       440 wS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~  507 (588)
                      |||||++|||++ |..||........   .........+..+|.++.+++.+||..+|.+|||++++++.|+
T Consensus       179 ~slG~i~~~l~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~ell~~l~  250 (251)
T cd05041         179 WSYGILLWETFSLGDTPYPGMSNQQTRERIESGYRMPAPQLCPEEIYRLMLQCWAYDPENRPSFSEIYNELQ  250 (251)
T ss_pred             HHHHHHHHHHHhccCCCCccCCHHHHHHHHhcCCCCCCCccCCHHHHHHHHHHhccChhhCcCHHHHHHHhh
Confidence            999999999998 8888865422111   1111223345678899999999999999999999999988654

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>KOG2345|consensus

Probab=100.00  E-value=4.9e-37  Score=293.39  Aligned_cols=267  Identities=20%  Similarity=0.229  Sum_probs=204.1

Q ss_pred             CccccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhc
Q psy4039         189 DVDDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVE  266 (588)
Q Consensus       189 ~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~  266 (588)
                      .+..++-++|.+.+.||+|||+.||.+..-  +..||+|++......                 ..+...+|++.-+++ 
T Consensus        14 ~tv~In~~Ryri~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~~~-----------------~~e~~~rEid~~rkf-   75 (302)
T KOG2345|consen   14 GTVIINNKRYRIQRLLGEGGFSFVDLVKGLSTGHLYALKKILCHSQE-----------------DIEEALREIDNHRKF-   75 (302)
T ss_pred             CcEEEcCceEEEeeeecCCCceeeeeecccCcccchhhheeeccchH-----------------HHHHHHHHHHHHHhh-
Confidence            334556688999999999999999998854  789999999542211                 223445689988887 


Q ss_pred             CCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh---cCCCCHHHH
Q psy4039         267 NLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER---CAQLSMHER  342 (588)
Q Consensus       267 ~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~---~~~l~~~~~  342 (588)
                         +||||++++++...+.                      ++ .....|++++|+ .|||.+.+...   +..+++.+.
T Consensus        76 ---~s~~vl~l~dh~l~~~----------------------~D-~~~~~yll~Pyy~~Gsl~d~i~~~k~kg~~~sE~~i  129 (302)
T KOG2345|consen   76 ---NSPNVLRLVDHQLREE----------------------KD-GKHEAYLLLPYYKRGSLLDEIERLKIKGNFVSEAQI  129 (302)
T ss_pred             ---CCcchHHHHHHHHHhh----------------------cc-CceeEEEEeehhccccHHHHHHHHhhcCCccCHHHH
Confidence               9999999998876643                      11 234699999999 79999999754   447999999


Q ss_pred             HHHHHHHHHHHHHHHhCC--ceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCcccc----ccccccccCCccc
Q psy4039         343 VLLFTQLLEGVTHLNMHR--TAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQY----SSADIELGGNVAL  416 (588)
Q Consensus       343 ~~i~~ql~~gL~yLH~~~--IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~----~~~~~~~~GT~~Y  416 (588)
                      ..|+.+|++||.+||+..  .+||||||.|||+.++     +.++|.|||.+....-......    --......-|..|
T Consensus       130 L~if~gic~gL~~lH~~~~~yAH~DiKP~NILls~~-----~~~vl~D~GS~~~a~i~i~~~~~a~~lQe~a~e~Ct~py  204 (302)
T KOG2345|consen  130 LWIFLGICRGLEALHEKEPPYAHRDIKPANILLSDS-----GLPVLMDLGSATQAPIQIEGSRQALRLQEWAEERCTIPY  204 (302)
T ss_pred             HHHHHHHHHHHHHHhccCCcccccCCCcceeEecCC-----CceEEEeccCccccceEeechHHHHHHHHHHHHhCCCcc
Confidence            999999999999999988  9999999999999987     7899999999876443111100    0001123468899


Q ss_pred             cchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccc------c-ccccCCCCCCccHHHHHHHHHhh
Q psy4039         417 MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY------E-VNALPQLNTNVPEVMRRLVAKLL  489 (588)
Q Consensus       417 ~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~------~-~~~~~~~~~~~~~~l~~Li~~~L  489 (588)
                      .|||++.-+.+.   ..++++|||||||++|+|+.|..||........-      . ....|. ...+|+.+.++|+.||
T Consensus       205 RAPELf~vk~~~---ti~ertDIWSLGCtLYa~mf~~sPfe~~~~~GgSlaLAv~n~q~s~P~-~~~yse~l~~lik~ml  280 (302)
T KOG2345|consen  205 RAPELFNVKSHC---TITERTDIWSLGCTLYAMMFGESPFERIYQQGGSLALAVQNAQISIPN-SSRYSEALHQLIKSML  280 (302)
T ss_pred             cCchheecccCc---ccccccchhhhhHHHHHHHHcCCcchHHhhcCCeEEEeeeccccccCC-CCCccHHHHHHHHHHh
Confidence            999999765432   1468999999999999999999999763322111      1 112222 2348999999999999


Q ss_pred             hhCCCCCCCHHHHHHHHhh
Q psy4039         490 ENDPSDRPSAELAATVCQL  508 (588)
Q Consensus       490 ~~dP~~Rps~~e~l~~L~~  508 (588)
                      +.||.+||++.+++..++.
T Consensus       281 qvdP~qRP~i~~ll~~~d~  299 (302)
T KOG2345|consen  281 QVDPNQRPTIPELLSKLDD  299 (302)
T ss_pred             cCCcccCCCHHHHHHHHHh
Confidence            9999999999999886653

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=100.00  E-value=1.2e-36  Score=320.39  Aligned_cols=256  Identities=22%  Similarity=0.249  Sum_probs=199.2

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++...||+|+||.||+|.+.  +..||||++....   ..            ......+.+|+.+++.+    .|||
T Consensus        15 ~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~---~~------------~~~~~~~~~E~~~l~~l----~h~~   75 (343)
T cd07851          15 DRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPF---QS------------AIHAKRTYRELRLLKHM----DHEN   75 (343)
T ss_pred             CceEEEEEeccCCceEEEEEEECCCCcEEEEEeccccc---ch------------hhHHHHHHHHHHHHHhc----cCCC
Confidence            78999999999999999999996  7899999974211   00            00112345688888887    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      |+++++++.....                      .......++|+||++++|.+++...  .+++..+..++.|+++||
T Consensus        76 iv~~~~~~~~~~~----------------------~~~~~~~~lv~e~~~~~L~~~~~~~--~l~~~~~~~~~~ql~~aL  131 (343)
T cd07851          76 VIGLLDVFTPASS----------------------LEDFQDVYLVTHLMGADLNNIVKCQ--KLSDDHIQFLVYQILRGL  131 (343)
T ss_pred             HHHHHHHhhcccc----------------------ccccccEEEEEecCCCCHHHHHhcC--CCCHHHHHHHHHHHHHHH
Confidence            9999988765321                      1122348999999999999998764  799999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN  433 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~  433 (588)
                      .|||+.||+||||||+||+++.+     +.++|+|||++.......        ....+|..|+|||++.+...     .
T Consensus       132 ~~LH~~gi~H~dlkp~Nill~~~-----~~~kL~dfg~~~~~~~~~--------~~~~~~~~y~aPE~~~~~~~-----~  193 (343)
T cd07851         132 KYIHSAGIIHRDLKPSNIAVNED-----CELKILDFGLARHTDDEM--------TGYVATRWYRAPEIMLNWMH-----Y  193 (343)
T ss_pred             HHHHHCCeecCCCCHHHeEECCC-----CCEEEccccccccccccc--------cCCcccccccCHHHHhCCCC-----C
Confidence            99999999999999999999987     789999999997654321        13467889999999865321     4


Q ss_pred             CCcCchhhHHHHHHHHhcCCCCCccccccccccc------------------------------c---ccCCCCCCccHH
Q psy4039         434 YSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV------------------------------N---ALPQLNTNVPEV  480 (588)
Q Consensus       434 ~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~------------------------------~---~~~~~~~~~~~~  480 (588)
                      +.++|||||||++|||++|+.||.+......+..                              .   ........++++
T Consensus       194 ~~~~DvwslGv~l~elltg~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  273 (343)
T cd07851         194 NQTVDIWSVGCIMAELLTGKTLFPGSDHIDQLKRIMNLVGTPDEELLQKISSESARNYIQSLPQMPKKDFKEVFSGANPL  273 (343)
T ss_pred             CchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHhcCCCCHHHHhhccchhHHHHHHhccccCCCCHHHHhccCCHH
Confidence            5789999999999999999999965321110000                              0   000112345889


Q ss_pred             HHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccCCC
Q psy4039         481 MRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGAT  521 (588)
Q Consensus       481 l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~~  521 (588)
                      +.++|.+||+.||.+|||+.++++         |||+....
T Consensus       274 l~dli~~~l~~~P~~Rpt~~ell~---------h~~~~~~~  305 (343)
T cd07851         274 AIDLLEKMLVLDPDKRITAAEALA---------HPYLAEYH  305 (343)
T ss_pred             HHHHHHHhCCCChhhCCCHHHHhc---------CCCccccC
Confidence            999999999999999999999998         99998443

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=100.00  E-value=5.2e-36  Score=311.33  Aligned_cols=253  Identities=23%  Similarity=0.286  Sum_probs=197.0

Q ss_pred             eEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceE
Q psy4039         198 IQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVV  275 (588)
Q Consensus       198 ~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV  275 (588)
                      |...+.||+|+||+||+|++.  +..||+|.+.........              ....+.+|+.+++.+    +||||+
T Consensus        23 ~~~~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~--------------~~~~~~~E~~~l~~l----~h~~iv   84 (313)
T cd06633          23 FVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNE--------------KWQDIIKEVKFLQQL----KHPNTI   84 (313)
T ss_pred             hhcceeeccCCCeEEEEEEECCCCcEEEEEEEeccccCchH--------------HHHHHHHHHHHHHhC----CCCCCc
Confidence            555677999999999999985  789999998532211110              112355688888887    899999


Q ss_pred             EEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q psy4039         276 VMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTH  355 (588)
Q Consensus       276 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~y  355 (588)
                      ++++++.+..                            ..|++|||+.|+|.+++......+++.++..++.|++.||.|
T Consensus        85 ~~~~~~~~~~----------------------------~~~lv~e~~~~~l~~~l~~~~~~l~~~~~~~~~~qi~~al~~  136 (313)
T cd06633          85 EYKGCYLKEH----------------------------TAWLVMEYCLGSASDLLEVHKKPLQEVEIAAITHGALQGLAY  136 (313)
T ss_pred             cEEEEEEeCC----------------------------EEEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            9999988732                            489999999989999887765579999999999999999999


Q ss_pred             HHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCC
Q psy4039         356 LNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS  435 (588)
Q Consensus       356 LH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~  435 (588)
                      ||++||+||||||+||+++.+     +.+||+|||++.....         .....|+..|+|||++......   ..+.
T Consensus       137 LH~~gi~H~dl~p~nili~~~-----~~~kL~dfg~~~~~~~---------~~~~~~~~~y~aPE~~~~~~~~---~~~~  199 (313)
T cd06633         137 LHSHNMIHRDIKAGNILLTEP-----GQVKLADFGSASKSSP---------ANSFVGTPYWMAPEVILAMDEG---QYDG  199 (313)
T ss_pred             HHHCCeecCCCChhhEEECCC-----CCEEEeecCCCcccCC---------CCCccccccccChhhccccCCC---CCCc
Confidence            999999999999999999887     7899999998854221         1135689999999998532110   1346


Q ss_pred             cCchhhHHHHHHHHhcCCCCCcccccccccc---ccccC-CCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhh
Q psy4039         436 KSDAWTAGTVAYEIFGHDNPFYQSARNTDYE---VNALP-QLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLW  511 (588)
Q Consensus       436 ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~---~~~~~-~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~  511 (588)
                      ++|||||||++|||++|..||..........   ....+ .....++..+++++.+||+.+|.+||++++++.       
T Consensus       200 ~sDv~slGvil~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rp~~~~~l~-------  272 (313)
T cd06633         200 KVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNDSPTLQSNEWTDSFRGFVDYCLQKIPQERPASAELLR-------  272 (313)
T ss_pred             hhhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhcCCCCCCccccCHHHHHHHHHHccCChhhCcCHHHHhc-------
Confidence            8999999999999999999997642211110   11111 123456788999999999999999999999998       


Q ss_pred             cCCccccCCCC
Q psy4039         512 APKHWLYGATP  522 (588)
Q Consensus       512 ~~h~w~~~~~~  522 (588)
                        |||+....+
T Consensus       273 --~~~~~~~~~  281 (313)
T cd06633         273 --HDFVRRDRP  281 (313)
T ss_pred             --CcccCCCch
Confidence              999986443

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=100.00  E-value=2.1e-36  Score=313.47  Aligned_cols=259  Identities=17%  Similarity=0.176  Sum_probs=193.4

Q ss_pred             eEEeeeecccCceeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEE
Q psy4039         198 IQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVM  277 (588)
Q Consensus       198 ~~~~~~IG~G~fG~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l  277 (588)
                      +.+++.+|.|+++.||++...++.||||++.......               .....+.+|+.+++.+    +||||+++
T Consensus         4 ~~i~~~~~~~~~v~~~~~~~~~~~~avK~~~~~~~~~---------------~~~~~~~~Ei~~l~~l----~h~~i~~~   64 (314)
T cd08216           4 TLIGKCFEDLMIVHLAKHKPTNTLVAVKKINLDSCSK---------------EDLKLLQQEIITSRQL----QHPNILPY   64 (314)
T ss_pred             hhhhHhhcCCceEEEEEecCCCCEEEEEEEeccccch---------------hHHHHHHHHHHHHHhc----CCcchhhh
Confidence            3455666777777888887779999999985421111               0223466789999887    89999999


Q ss_pred             eeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHH
Q psy4039         278 HFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER-CAQLSMHERVLLFTQLLEGVTH  355 (588)
Q Consensus       278 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~-~~~l~~~~~~~i~~ql~~gL~y  355 (588)
                      ++++.+..                            ..+++|||+ +|+|.+++... ...+++..+..++.|+++||.|
T Consensus        65 ~~~~~~~~----------------------------~~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~  116 (314)
T cd08216          65 VTSFIVDS----------------------------ELYVVSPLMAYGSCEDLLKTHFPEGLPELAIAFILKDVLNALDY  116 (314)
T ss_pred             hheeecCC----------------------------eEEEEEeccCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Confidence            99887632                            489999999 58999999864 3468999999999999999999


Q ss_pred             HHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCcc--ccccccccccCCccccchhHHhcCCCCccCCC
Q psy4039         356 LNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSM--QYSSADIELGGNVALMAPEVALATPGLFSFVN  433 (588)
Q Consensus       356 LH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~--~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~  433 (588)
                      ||+++|+||||||+||+++.+     +.+||+|||.+.........  ..........++..|+|||++......    +
T Consensus       117 LH~~~ivH~dlk~~Nili~~~-----~~~kl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~----~  187 (314)
T cd08216         117 IHSKGFIHRSVKASHILLSGD-----GKVVLSGLRYSVSMIKHGKRQRVVHDFPKSSVKNLPWLSPEVLQQNLQG----Y  187 (314)
T ss_pred             HHHCCeecCCCCcceEEEecC-----CceEEecCccceeeccccccccccccccccccccccccCHHHhcCCCCC----C
Confidence            999999999999999999987     78999999998764331110  011111234578899999999754322    4


Q ss_pred             CCcCchhhHHHHHHHHhcCCCCCccccccccc------------c------------------------ccccCCCCCCc
Q psy4039         434 YSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY------------E------------------------VNALPQLNTNV  477 (588)
Q Consensus       434 ~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~------------~------------------------~~~~~~~~~~~  477 (588)
                      +.++|||||||++|||++|..||.........            .                        ..........+
T Consensus       188 ~~~~Diws~G~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (314)
T cd08216         188 NEKSDIYSVGITACELANGHVPFKDMPATQMLLEKVRGTVPCLLDKSTYPLYEDSMSQSRSSNEHPNNRDSVDHPYTRTF  267 (314)
T ss_pred             CcchhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhccCccccccCchhhhcCCcCcccccccccchhhhhhcchhhHH
Confidence            47899999999999999999999752110000            0                        00000111234


Q ss_pred             cHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccCCC
Q psy4039         478 PEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGAT  521 (588)
Q Consensus       478 ~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~~  521 (588)
                      +.++.+++.+||+.||++|||++++++         |||++...
T Consensus       268 ~~~~~~li~~~l~~~P~~Rpt~~~ll~---------~p~~~~~~  302 (314)
T cd08216         268 SEHFHQFVELCLQRDPESRPSASQLLN---------HSFFKQCK  302 (314)
T ss_pred             HHHHHHHHHHHhhcCCCcCcCHHHHhc---------CchHhhhc
Confidence            567899999999999999999999999         99998443

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=100.00  E-value=1.6e-36  Score=308.74  Aligned_cols=252  Identities=24%  Similarity=0.286  Sum_probs=195.7

Q ss_pred             eEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceE
Q psy4039         198 IQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVV  275 (588)
Q Consensus       198 ~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV  275 (588)
                      |++.+.||.|+||.||+|.+.  +..||||.+.... ..              ......+.+|+.+++.+    +||||+
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~-~~--------------~~~~~~~~~e~~~l~~l----~~~~i~   61 (287)
T cd07840           1 YEKIAQIGEGTYGQVYKARNKKTGELVALKKIRMEN-EK--------------EGFPITAIREIKLLQKL----RHPNIV   61 (287)
T ss_pred             CeeeEEeccCCCeEEEEEEECCCCeEEEEEEEeccc-cc--------------ccchHHHHHHHHHHHhc----cCCCee
Confidence            678899999999999999987  6899999996422 00              01123456788999887    899999


Q ss_pred             EEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q psy4039         276 VMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTH  355 (588)
Q Consensus       276 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~y  355 (588)
                      ++++++.+..                          ....++||||++++|.+++......+++..++.++.|+++||+|
T Consensus        62 ~~~~~~~~~~--------------------------~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~al~~  115 (287)
T cd07840          62 RLKEIVTSKG--------------------------KGSIYMVFEYMDHDLTGLLDSPEVKFTESQIKCYMKQLLEGLQY  115 (287)
T ss_pred             eheeeEecCC--------------------------CCcEEEEeccccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHH
Confidence            9999987631                          12499999999889999987764589999999999999999999


Q ss_pred             HHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCC
Q psy4039         356 LNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS  435 (588)
Q Consensus       356 LH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~  435 (588)
                      ||+.|++|+||||+||+++++     +.++|+|||++...........    ....++..|+|||.+.+...     ++.
T Consensus       116 LH~~~~~h~dl~p~nil~~~~-----~~~~l~d~g~~~~~~~~~~~~~----~~~~~~~~y~~PE~~~~~~~-----~~~  181 (287)
T cd07840         116 LHSNGILHRDIKGSNILINND-----GVLKLADFGLARPYTKRNSADY----TNRVITLWYRPPELLLGATR-----YGP  181 (287)
T ss_pred             HHHCCceeccCcHHHeEEcCC-----CCEEEccccceeeccCCCcccc----cccccccccCCceeeEcccc-----CCh
Confidence            999999999999999999987     8999999999987654321111    13457889999998764321     357


Q ss_pred             cCchhhHHHHHHHHhcCCCCCcccccccccc----------cccc-----------------------CCCCCCccHHHH
Q psy4039         436 KSDAWTAGTVAYEIFGHDNPFYQSARNTDYE----------VNAL-----------------------PQLNTNVPEVMR  482 (588)
Q Consensus       436 ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~----------~~~~-----------------------~~~~~~~~~~l~  482 (588)
                      ++||||||+++|||++|..||..........          ...+                       ..+...+++++.
T Consensus       182 ~~Dv~slG~~l~el~t~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (287)
T cd07840         182 EVDMWSVGCILAELFLGKPIFQGSTELEQLEKIFELCGSPTDENWPGVSKLPWFENLKPKKPYKRRLREFFKHLIDPSAL  261 (287)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCchhhccccccchhhhhccccccchhHHHHHhcccCCHHHH
Confidence            8999999999999999999996532110000          0000                       001112388899


Q ss_pred             HHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccc
Q psy4039         483 RLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWL  517 (588)
Q Consensus       483 ~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~  517 (588)
                      +++.+||..||.+||++++++.         |||+
T Consensus       262 ~~i~~~l~~~P~~Rp~~~~~l~---------~~~~  287 (287)
T cd07840         262 DLLDKLLTLDPKKRISADQALQ---------HEYF  287 (287)
T ss_pred             HHHHHHcCCChhhCcCHHHHhh---------CcCC
Confidence            9999999999999999999999         9996

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=4.3e-37  Score=309.87  Aligned_cols=242  Identities=18%  Similarity=0.192  Sum_probs=182.8

Q ss_pred             eeecccCceeEEEEEEC---------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         202 KFIAKGTNAVVYEATFR---------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       202 ~~IG~G~fG~Vy~a~~~---------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      +.||+|+||.||+|.+.         ..+||+|.+....                 ....+.+.+|+.+++.+    .||
T Consensus         1 ~~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~-----------------~~~~~~~~~e~~~l~~~----~h~   59 (258)
T cd05078           1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSH-----------------RNYSESFFEAASMMSQL----SHK   59 (258)
T ss_pred             CCCCcccchhheeeeecccccccccccchhhHHhhcchh-----------------HHHHHHHHHHHHHHHhC----CCC
Confidence            46999999999999875         2347888763210                 00123455678888876    899


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLE  351 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~  351 (588)
                      ||+++++++.+..                            ..++||||+ +|+|.+++..+...+++..+..++.||+.
T Consensus        60 ~iv~~~~~~~~~~----------------------------~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~  111 (258)
T cd05078          60 HLVLNYGVCVCGD----------------------------ESIMVQEYVKFGSLDTYLKKNKNLINISWKLEVAKQLAW  111 (258)
T ss_pred             ChhheeeEEEeCC----------------------------CcEEEEecCCCCcHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence            9999999987632                            378999999 57999999876557899999999999999


Q ss_pred             HHHHHHhCCceeccCCCCcEEEcCCCCC---CCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCC
Q psy4039         352 GVTHLNMHRTAHRDLKSDNILLDCSEDN---TCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGL  428 (588)
Q Consensus       352 gL~yLH~~~IvHrDLKp~NILld~~~~~---~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~  428 (588)
                      ||.|||++||+||||||+|||++.+...   ..+.++++|||++......         ....|++.|+|||++.+... 
T Consensus       112 ~l~~lH~~~iiH~dlkp~nili~~~~~~~~~~~~~~~l~d~g~~~~~~~~---------~~~~~~~~y~aPE~~~~~~~-  181 (258)
T cd05078         112 ALHFLEDKGLTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPGISITVLPK---------EILLERIPWVPPECIENPQN-  181 (258)
T ss_pred             HHHHHHHCCeecCCCccceEEEecccccccCCCceEEecccccccccCCc---------hhccccCCccCchhccCCCC-
Confidence            9999999999999999999999876321   1234799999988654321         13458889999999865321 


Q ss_pred             ccCCCCCcCchhhHHHHHHHHhcCC-CCCccccccccc-cccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHH
Q psy4039         429 FSFVNYSKSDAWTAGTVAYEIFGHD-NPFYQSARNTDY-EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVC  506 (588)
Q Consensus       429 ~~~~~~~ksDVwS~Gvil~ElltG~-~Pf~~~~~~~~~-~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L  506 (588)
                          .+.++|||||||++|||++|. .||......... .......++...+.++.+++.+||+.||++|||++++++.|
T Consensus       182 ----~~~~~DiwslG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~l  257 (258)
T cd05078         182 ----LSLAADKWSFGTTLWEIFSGGDKPLSALDSQKKLQFYEDRHQLPAPKWTELANLINQCMDYEPDFRPSFRAIIRDL  257 (258)
T ss_pred             ----CCchhhHHHHHHHHHHHHcCCCCChhhccHHHHHHHHHccccCCCCCcHHHHHHHHHHhccChhhCCCHHHHHHhc
Confidence                346799999999999999995 555432111111 11123345566778999999999999999999999988743

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=100.00  E-value=2.7e-36  Score=302.93  Aligned_cols=244  Identities=21%  Similarity=0.266  Sum_probs=191.0

Q ss_pred             eeecccCceeEEEEEEC---C--eeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEE
Q psy4039         202 KFIAKGTNAVVYEATFR---G--VEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVV  276 (588)
Q Consensus       202 ~~IG~G~fG~Vy~a~~~---g--~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~  276 (588)
                      +.||+|++|.||+|.+.   +  ..||||.+......                ...+.+.+|+.+++.+    +||||++
T Consensus         1 ~~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~----------------~~~~~~~~e~~~l~~l----~h~~iv~   60 (257)
T cd05040           1 KKLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLS----------------DIMDDFLKEAAIMHSL----DHENLIR   60 (257)
T ss_pred             CcCCccCcccEEeeeEecCCCCceEEEEeecCCcccH----------------HHHHHHHHHHHHHhhc----CCCCccc
Confidence            46899999999999885   2  36999998542211                1234456788888887    8999999


Q ss_pred             EeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc-CCCCHHHHHHHHHHHHHHHH
Q psy4039         277 MHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC-AQLSMHERVLLFTQLLEGVT  354 (588)
Q Consensus       277 l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~-~~l~~~~~~~i~~ql~~gL~  354 (588)
                      +++.+.+ .                            ..+++|||+ +++|.+++.... ..+++..++.++.|++.||+
T Consensus        61 ~~~~~~~-~----------------------------~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~L~  111 (257)
T cd05040          61 LYGVVLT-H----------------------------PLMMVTELAPLGSLLDRLRKDALGHFLISTLCDYAVQIANGMR  111 (257)
T ss_pred             eeEEEcC-C----------------------------eEEEEEEecCCCcHHHHHHhcccccCcHHHHHHHHHHHHHHHH
Confidence            9988764 1                            389999999 689999998764 46899999999999999999


Q ss_pred             HHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCC
Q psy4039         355 HLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY  434 (588)
Q Consensus       355 yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~  434 (588)
                      |||+++++||||||+||+++.+     +.+||+|||+++........ +. ......++..|+|||++.+..      .+
T Consensus       112 ~lH~~~i~H~di~p~nil~~~~-----~~~kl~dfg~~~~~~~~~~~-~~-~~~~~~~~~~y~~pE~~~~~~------~~  178 (257)
T cd05040         112 YLESKRFIHRDLAARNILLASD-----DKVKIGDFGLMRALPQNEDH-YV-MEEHLKVPFAWCAPESLRTRT------FS  178 (257)
T ss_pred             HHHhCCccccccCcccEEEecC-----CEEEeccccccccccccccc-ee-cccCCCCCceecCHHHhcccC------cC
Confidence            9999999999999999999988     79999999999876542211 11 111345788999999987654      45


Q ss_pred             CcCchhhHHHHHHHHhc-CCCCCccccccccc----cccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHh
Q psy4039         435 SKSDAWTAGTVAYEIFG-HDNPFYQSARNTDY----EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       435 ~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~~----~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~  507 (588)
                      .++|||||||++|||++ |..||.........    ........+..+|..+.+++.+||+.+|++||++.++++.|.
T Consensus       179 ~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~  256 (257)
T cd05040         179 HASDVWMFGVTLWEMFTYGEEPWAGLSGSQILKKIDKEGERLERPEACPQDIYNVMLQCWAHNPADRPTFAALREFLP  256 (257)
T ss_pred             chhhhHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCcCCCCccCCHHHHHHHHHHCCCCcccCCCHHHHHHHhc
Confidence            68999999999999998 99999653211111    111222344567899999999999999999999999988553

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=100.00  E-value=3.2e-36  Score=308.22  Aligned_cols=260  Identities=23%  Similarity=0.361  Sum_probs=199.4

Q ss_pred             CeEEeeeecccCceeEEEEEEC-----CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCC
Q psy4039         197 DIQIGKFIAKGTNAVVYEATFR-----GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPH  271 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~~~-----g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~H  271 (588)
                      +|++.+.||+|+||.||++...     +..||||++.......             .......+.+|+.++..+   ..|
T Consensus         1 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~-------------~~~~~~~~~~E~~~l~~~---~~~   64 (288)
T cd05583           1 NFELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQ-------------KAKTAEHTRTERQVLEAV---RRC   64 (288)
T ss_pred             CceEEEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHh-------------hhhHHHHHHHHHHHHHhc---cCC
Confidence            4788999999999999999864     5789999985311100             001223456788888877   469


Q ss_pred             CceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy4039         272 PNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLL  350 (588)
Q Consensus       272 pNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~  350 (588)
                      |||+++++++...                            ...++||||+ +++|.+++.... .+++..+..++.|++
T Consensus        65 ~~i~~~~~~~~~~----------------------------~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~ql~  115 (288)
T cd05583          65 PFLVTLHYAFQTD----------------------------TKLHLILDYVNGGELFTHLYQRE-HFTESEVRVYIAEIV  115 (288)
T ss_pred             cchhhhheeeecC----------------------------CEEEEEEecCCCCcHHHHHhhcC-CcCHHHHHHHHHHHH
Confidence            9999999887652                            1489999999 579999987653 789999999999999


Q ss_pred             HHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCcc
Q psy4039         351 EGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFS  430 (588)
Q Consensus       351 ~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~  430 (588)
                      +||.|||+.+++||||||+||+++.+     +.++|+|||+++........    ......|++.|+|||.+.+....  
T Consensus       116 ~~l~~lH~~~~~H~dl~p~nil~~~~-----~~~~l~dfg~~~~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~--  184 (288)
T cd05583         116 LALDHLHQLGIIYRDIKLENILLDSE-----GHVVLTDFGLSKEFLAEEEE----RAYSFCGTIEYMAPEVIRGGSGG--  184 (288)
T ss_pred             HHHHHHHHCCeeccCCCHHHeEECCC-----CCEEEEECcccccccccccc----ccccccCCccccCHHHhcCCCCC--
Confidence            99999999999999999999999987     78999999998765432111    11134689999999998654321  


Q ss_pred             CCCCCcCchhhHHHHHHHHhcCCCCCcccccccc------ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHH
Q psy4039         431 FVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD------YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAAT  504 (588)
Q Consensus       431 ~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~------~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~  504 (588)
                        .+.++||||||+++|||++|..||........      ......+..+..++.++++++.+||+.||++|||+.++..
T Consensus       185 --~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~R~t~~~~~~  262 (288)
T cd05583         185 --HDKAVDWWSLGVLTFELLTGASPFTVDGEQNSQSEISRRILKSKPPFPKTMSAEARDFIQKLLEKDPKKRLGANGADE  262 (288)
T ss_pred             --CcchhhhHHHHHHHHHHHhCCCCcccCcccchHHHHHHHHHccCCCCCcccCHHHHHHHHHHhcCCHhhccCcchHHH
Confidence              34679999999999999999999964211100      1112234556678899999999999999999999877766


Q ss_pred             HHhhhhhcCCccccCC
Q psy4039         505 VCQLYLWAPKHWLYGA  520 (588)
Q Consensus       505 ~L~~~~~~~h~w~~~~  520 (588)
                      .|.      |||++..
T Consensus       263 ~l~------~~~~~~~  272 (288)
T cd05583         263 IKN------HPFFQGI  272 (288)
T ss_pred             Hhc------CcccccC
Confidence            666      9998643

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=100.00  E-value=2.3e-36  Score=305.51  Aligned_cols=249  Identities=25%  Similarity=0.315  Sum_probs=189.8

Q ss_pred             eeecccCceeEEEEEECC--------eeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         202 KFIAKGTNAVVYEATFRG--------VEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       202 ~~IG~G~fG~Vy~a~~~g--------~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      +.||+|+||.||+|++..        ..||||.+......                .....+.+|+.+++.+    +|||
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~~----------------~~~~~~~~e~~~l~~l----~h~~   60 (269)
T cd05044           1 NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATD----------------QEKKEFLKEAHLMSNF----NHPN   60 (269)
T ss_pred             CccccccceeEEeeeecccccCcccceeehhhhhhcccch----------------hhHHHHHHHHHHHHhc----CCCC
Confidence            369999999999998862        57999987432100                1123456788888887    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh------cCCCCHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER------CAQLSMHERVLLF  346 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~------~~~l~~~~~~~i~  346 (588)
                      |+++++++.+..                            ..+++|||+ +++|.+++...      ...+++.++..++
T Consensus        61 i~~~~~~~~~~~----------------------------~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~  112 (269)
T cd05044          61 IVKLLGVCLLNE----------------------------PQYIIMELMEGGDLLSYLRDARVERFGPPLLTLKELLDIC  112 (269)
T ss_pred             eeeEeeeecCCC----------------------------CeEEEEeccCCCcHHHHHHHhhhcccCCccccHHHHHHHH
Confidence            999999887532                            389999999 68999999753      1247899999999


Q ss_pred             HHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCC
Q psy4039         347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP  426 (588)
Q Consensus       347 ~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~  426 (588)
                      .|++.||.|||+.+++|+||||+||+++.+..+....++|+|||+++.........   ......++..|+|||++.+..
T Consensus       113 ~~l~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~~~~~~l~dfg~~~~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~  189 (269)
T cd05044         113 LDVAKGCVYLEQMHFIHRDLAARNCLVSEKGYDADRVVKIGDFGLARDIYKSDYYR---KEGEGLLPVRWMAPESLLDGK  189 (269)
T ss_pred             HHHHHHHHHHHhCCcccCCCChheEEEecCCCCCCcceEECCcccccccccccccc---cCcccCCCccccCHHHHccCC
Confidence            99999999999999999999999999997732222489999999997654321111   111234678999999997654


Q ss_pred             CCccCCCCCcCchhhHHHHHHHHhc-CCCCCccccccccc---cccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHH
Q psy4039         427 GLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTDY---EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA  502 (588)
Q Consensus       427 ~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~~---~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~  502 (588)
                            .+.++|||||||++|||++ |..||.........   ........+..+|+.+.+++.+||..+|.+||+++++
T Consensus       190 ------~~~~~Dv~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i  263 (269)
T cd05044         190 ------FTTQSDVWSFGVLMWEILTLGQQPYPALNNQEVLQHVTAGGRLQKPENCPDKIYQLMTNCWAQDPSERPTFDRI  263 (269)
T ss_pred             ------cccchhHHHHHHHHHHHHHcCCCCCcccCHHHHHHHHhcCCccCCcccchHHHHHHHHHHcCCCcccCCCHHHH
Confidence                  4578999999999999998 99998653211111   1122334556789999999999999999999999999


Q ss_pred             HHHHh
Q psy4039         503 ATVCQ  507 (588)
Q Consensus       503 l~~L~  507 (588)
                      ++.|+
T Consensus       264 ~~~l~  268 (269)
T cd05044         264 QEILQ  268 (269)
T ss_pred             HHHHh
Confidence            88765

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=100.00  E-value=1.3e-36  Score=317.48  Aligned_cols=259  Identities=23%  Similarity=0.256  Sum_probs=201.4

Q ss_pred             CeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCce
Q psy4039         197 DIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNV  274 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNI  274 (588)
                      +|++.+.||.|+||.||+|++.  +..||||++.....               .....+.+.+|+.+++.+    +||||
T Consensus         1 ~y~i~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~---------------~~~~~~~~~~e~~~l~~l----~~~~i   61 (330)
T cd07834           1 RYELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFD---------------DLIDAKRILREIKLLRHL----RHENI   61 (330)
T ss_pred             CceeeeeecCCCCeEEEEEEeCCCCcEEEEEeeccccc---------------cchhhhhHHHHHHHHHhc----CCcch
Confidence            5889999999999999999986  78999999853211               011234566789999887    89999


Q ss_pred             EEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy4039         275 VVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVT  354 (588)
Q Consensus       275 V~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~  354 (588)
                      +++++++.+...                       .....+|++|||++++|.+++.... .+++..+..++.|++.||.
T Consensus        62 ~~~~~~~~~~~~-----------------------~~~~~~~lv~e~~~~~l~~~l~~~~-~l~~~~~~~i~~~l~~~l~  117 (330)
T cd07834          62 IGLLDILRPPSP-----------------------EDFNDVYIVTELMETDLHKVIKSPQ-PLTDDHIQYFLYQILRGLK  117 (330)
T ss_pred             hhhhhhhcccCc-----------------------ccccceEEEecchhhhHHHHHhCCC-CCCHHHHHHHHHHHHHHHH
Confidence            999998876320                       1122489999999889999987654 8999999999999999999


Q ss_pred             HHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCC
Q psy4039         355 HLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY  434 (588)
Q Consensus       355 yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~  434 (588)
                      |||++||+||||||+|||++.+     +.++|+|||++.........  ........||+.|+|||++.+...     .+
T Consensus       118 ~LH~~gi~H~dlkp~nili~~~-----~~~~L~dfg~~~~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~-----~~  185 (330)
T cd07834         118 YLHSANVIHRDLKPSNILVNSN-----CDLKICDFGLARGVDPDEDE--KGFLTEYVVTRWYRAPELLLSSSR-----YT  185 (330)
T ss_pred             HHHhCCeecCCCCHHHEEEcCC-----CCEEEcccCceEeecccccc--cccccccccccCcCCceeeecccC-----CC
Confidence            9999999999999999999988     89999999999876553210  011123468899999999876521     45


Q ss_pred             CcCchhhHHHHHHHHhcCCCCCcccccccccc---------------------------------ccccCCCCCCccHHH
Q psy4039         435 SKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE---------------------------------VNALPQLNTNVPEVM  481 (588)
Q Consensus       435 ~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~l  481 (588)
                      .++||||||+++|+|++|.+||.+......+.                                 ..........+++++
T Consensus       186 ~~sDi~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (330)
T cd07834         186 KAIDIWSVGCIFAELLTRKPLFPGRDYIDQLNLIVEVLGTPSEEDLKFITSEKARNYLKSLPKKPKKPLSKLFPGASPEA  265 (330)
T ss_pred             cchhHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHhcCCCChhHhhhccccchhhHHhhcccCCcchhHHhcccCCHHH
Confidence            78999999999999999999996532100000                                 000011123468899


Q ss_pred             HHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccC
Q psy4039         482 RRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       482 ~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~  519 (588)
                      .++|.+||+.||++||++++++.         |||++.
T Consensus       266 ~~li~~~l~~~P~~Rpt~~~ll~---------~~~~~~  294 (330)
T cd07834         266 IDLLEKMLVFDPKKRITADEALA---------HPYLAQ  294 (330)
T ss_pred             HHHHHHHccCChhhCCCHHHHHh---------CccHHh
Confidence            99999999999999999999998         999973

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=100.00  E-value=4.5e-36  Score=304.04  Aligned_cols=256  Identities=22%  Similarity=0.250  Sum_probs=192.3

Q ss_pred             eEEeeeecccCceeEEEEEEC-----CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         198 IQIGKFIAKGTNAVVYEATFR-----GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       198 ~~~~~~IG~G~fG~Vy~a~~~-----g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      |.+.+.||+|+||.||+|.+.     +..||||++.......               ...+.+.+|+.+++.+    +||
T Consensus         1 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~---------------~~~~~~~~E~~~l~~l----~h~   61 (273)
T cd05074           1 FTLGRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSS---------------SDIEEFLREAACMKEF----DHP   61 (273)
T ss_pred             CcchhcccCCCCCCEEeeEeeccCCCceEEEEEEeccccCCh---------------HHHHHHHHHHHHHhcC----CCC
Confidence            567889999999999999874     5789999985321110               0123355688888887    899


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh-----cCCCCHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER-----CAQLSMHERVLLF  346 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~-----~~~l~~~~~~~i~  346 (588)
                      ||+++++++....+                      .+.....+++++|+ +|+|.+++...     ...+++..+..++
T Consensus        62 ~i~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~  119 (273)
T cd05074          62 NVIKLIGVSLRSRA----------------------KGRLPIPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFM  119 (273)
T ss_pred             CcceEEEEEccCCC----------------------CCcccceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHH
Confidence            99999998875321                      11112367889998 68999887643     1257899999999


Q ss_pred             HHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCC
Q psy4039         347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP  426 (588)
Q Consensus       347 ~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~  426 (588)
                      .|++.||+|||+++|+||||||+||+++.+     +.+||+|||+++....+.....   .....+++.|++||.+....
T Consensus       120 ~~i~~~l~~lH~~~i~H~dikp~nili~~~-----~~~kl~dfg~~~~~~~~~~~~~---~~~~~~~~~~~~pe~~~~~~  191 (273)
T cd05074         120 IDIASGMEYLSSKNFIHRDLAARNCMLNEN-----MTVCVADFGLSKKIYSGDYYRQ---GCASKLPVKWLALESLADNV  191 (273)
T ss_pred             HHHHHHHHHHHhCCEeecccchhhEEEcCC-----CCEEECcccccccccCCcceec---CCCccCchhhcCHhHHhcCc
Confidence            999999999999999999999999999877     7899999999986543221111   11234567899999987654


Q ss_pred             CCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccccc---ccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHH
Q psy4039         427 GLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTDYE---VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA  502 (588)
Q Consensus       427 ~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~~~---~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~  502 (588)
                            .+.++|||||||++|||++ |.+||.+........   .......+..+++.+.+++.+||+.+|++|||+.++
T Consensus       192 ------~~~~sDi~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~Rps~~~~  265 (273)
T cd05074         192 ------YTTHSDVWAFGVTMWEIMTRGQTPYAGVENSEIYNYLIKGNRLKQPPDCLEDVYELMCQCWSPEPKCRPSFQHL  265 (273)
T ss_pred             ------cchhhhhHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHH
Confidence                  3468999999999999999 889986543221111   111223345678899999999999999999999999


Q ss_pred             HHHHhh
Q psy4039         503 ATVCQL  508 (588)
Q Consensus       503 l~~L~~  508 (588)
                      +..|+.
T Consensus       266 ~~~l~~  271 (273)
T cd05074         266 RDQLEL  271 (273)
T ss_pred             HHHHHh
Confidence            987763

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=100.00  E-value=5e-36  Score=310.63  Aligned_cols=257  Identities=23%  Similarity=0.288  Sum_probs=200.2

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      +.|+..+.||+|+||.||+|++.  +..||||.+.........              ....+.+|+.+++.+    +|||
T Consensus        15 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~--------------~~~~~~~e~~~l~~l----~h~~   76 (308)
T cd06634          15 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNE--------------KWQDIIKEVRFLQKL----RHPN   76 (308)
T ss_pred             HHHHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEecccccChH--------------HHHHHHHHHHHHHhC----CCCC
Confidence            44777888999999999999986  788999998532111110              122345688888887    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      ++++++++.+..                            ..++||||+.|+|.+++......+++.++..++.|++.||
T Consensus        77 i~~~~~~~~~~~----------------------------~~~lv~e~~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~~l  128 (308)
T cd06634          77 TIQYRGCYLREH----------------------------TAWLVMEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGL  128 (308)
T ss_pred             cccEEEEEEcCC----------------------------eeEEEEEccCCCHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence            999999987632                            4899999998899888876555799999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN  433 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~  433 (588)
                      .|||+++++||||||+||+++.+     +.++|+|||++......         ....|++.|+|||++.+....   ..
T Consensus       129 ~~LH~~~i~H~dl~p~nil~~~~-----~~~kl~dfg~~~~~~~~---------~~~~~~~~y~aPE~~~~~~~~---~~  191 (308)
T cd06634         129 AYLHSHNMIHRDVKAGNILLSEP-----GLVKLGDFGSASIMAPA---------NXFVGTPYWMAPEVILAMDEG---QY  191 (308)
T ss_pred             HHHHhCCcccCCCCHHhEEECCC-----CcEEECCcccceeecCc---------ccccCCccccCHHHHhhcccC---CC
Confidence            99999999999999999999887     78999999998664321         134688999999998542110   13


Q ss_pred             CCcCchhhHHHHHHHHhcCCCCCcccccccc---ccccccCC-CCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhh
Q psy4039         434 YSKSDAWTAGTVAYEIFGHDNPFYQSARNTD---YEVNALPQ-LNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLY  509 (588)
Q Consensus       434 ~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~---~~~~~~~~-~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~  509 (588)
                      +.++|||||||++|||++|..||........   ......+. ....++..+.++|.+||+.+|++||+++++++     
T Consensus       192 ~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~P~~Rp~~~~ll~-----  266 (308)
T cd06634         192 DGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLK-----  266 (308)
T ss_pred             CcccchHHHHHHHHHHHcCCCCCccccHHHHHHHHhhcCCCCcCcccccHHHHHHHHHHhhCCcccCCCHHHHhh-----
Confidence            4689999999999999999999866321111   11111122 23467889999999999999999999999999     


Q ss_pred             hhcCCccccCCCCCh
Q psy4039         510 LWAPKHWLYGATPSH  524 (588)
Q Consensus       510 ~~~~h~w~~~~~~~~  524 (588)
                          |+|+....+..
T Consensus       267 ----~~~~~~~~~~~  277 (308)
T cd06634         267 ----HRFVLRERPPT  277 (308)
T ss_pred             ----CccccccCChh
Confidence                99998655544

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=100.00  E-value=1.1e-35  Score=296.67  Aligned_cols=252  Identities=23%  Similarity=0.295  Sum_probs=203.6

Q ss_pred             CeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCce
Q psy4039         197 DIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNV  274 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNI  274 (588)
                      +|...+.||+|++|.||+|.+.  +..|++|++......               ....+.+.+|+.+++.+    +||||
T Consensus         1 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~---------------~~~~~~~~~e~~~l~~l----~~~~i   61 (260)
T cd06606           1 EWTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGDS---------------EEELEALEREIRILSSL----QHPNI   61 (260)
T ss_pred             CceeeeEeeecCceEEEEEEECCCCcEEEEEEeeccccc---------------hHHHHHHHHHHHHHHHc----CCCCE
Confidence            4788899999999999999997  889999998532211               01234456788999887    89999


Q ss_pred             EEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         275 VVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       275 V~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      +++++++.+..                          ....+++||++ +++|.+++.... .+++.+++.++.|++.||
T Consensus        62 ~~~~~~~~~~~--------------------------~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~l~~~l  114 (260)
T cd06606          62 VRYYGSERDEE--------------------------KNTLNIFLEYVSGGSLSSLLKKFG-KLPEPVIRKYTRQILEGL  114 (260)
T ss_pred             eeEEEEEecCC--------------------------CCeEEEEEEecCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHH
Confidence            99999887631                          12589999999 689999998765 899999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN  433 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~  433 (588)
                      .|||+.+++|+||+|+||+++.+     +.++|+|||.+..........   ......++..|+|||.+.+..      .
T Consensus       115 ~~lh~~~~~h~dl~p~ni~i~~~-----~~~~l~d~~~~~~~~~~~~~~---~~~~~~~~~~y~~pE~~~~~~------~  180 (260)
T cd06606         115 AYLHSNGIVHRDIKGANILVDSD-----GVVKLADFGCAKRLGDIETGE---GTGSVRGTPYWMAPEVIRGEE------Y  180 (260)
T ss_pred             HHHHHCCccccCCCHHHEEEcCC-----CCEEEcccccEEecccccccc---cccCCCCCccccCHhhhcCCC------C
Confidence            99999999999999999999987     789999999998765532210   011356889999999987654      4


Q ss_pred             CCcCchhhHHHHHHHHhcCCCCCcccccc--ccc---cccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhh
Q psy4039         434 YSKSDAWTAGTVAYEIFGHDNPFYQSARN--TDY---EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQL  508 (588)
Q Consensus       434 ~~ksDVwS~Gvil~ElltG~~Pf~~~~~~--~~~---~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~  508 (588)
                      ..++||||||+++|+|++|..||......  ...   .....+.++..++..+++++.+||+.||++||++.++++    
T Consensus       181 ~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~p~~Rp~~~~ll~----  256 (260)
T cd06606         181 GRAADIWSLGCTVIEMATGKPPWSELGNPMAALYKIGSSGEPPEIPEHLSEEAKDFLRKCLRRDPKKRPTADELLQ----  256 (260)
T ss_pred             CchhhHHHHHHHHHHHHhCCCCCCCCCchHHHHHhccccCCCcCCCcccCHHHHHHHHHhCcCChhhCCCHHHHhh----
Confidence            46899999999999999999999764311  001   112344566778999999999999999999999999999    


Q ss_pred             hhhcCCccc
Q psy4039         509 YLWAPKHWL  517 (588)
Q Consensus       509 ~~~~~h~w~  517 (588)
                           |||+
T Consensus       257 -----~~~~  260 (260)
T cd06606         257 -----HPFL  260 (260)
T ss_pred             -----CCCC
Confidence                 9996

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>KOG0669|consensus

Probab=100.00  E-value=2.8e-38  Score=301.95  Aligned_cols=286  Identities=20%  Similarity=0.267  Sum_probs=214.5

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      +.|+...+||+|.||.||+|+.+  |+.||+|++.-            +-.+|..+   ....+|+++|..+    +|+|
T Consensus        17 ~~yek~~kigqGtfgeVFkAr~~n~~kkvalkkvlm------------eneKeGfp---italreikiL~~l----kHen   77 (376)
T KOG0669|consen   17 SKYEKLAKIGQGTFGEVFKARSKNTGKKVALKKVLM------------ENEKEGFP---ITALREIKILQLL----KHEN   77 (376)
T ss_pred             hHHHHHHhcCCchHHHHHHHhhcCccchhHHHHHHH------------hccccCCc---HHHHHHHHHHHHh----cchh
Confidence            66888889999999999999987  77899987521            00122211   2235799999987    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      ++.+++.|.....                  |.  .+...++|+||++|..+|..+|.+...+++..++.+++.+++.||
T Consensus        78 v~nliEic~tk~T------------------p~--~r~r~t~ylVf~~cehDLaGlLsn~~vr~sls~Ikk~Mk~Lm~GL  137 (376)
T KOG0669|consen   78 VVNLIEICRTKAT------------------PT--NRDRATFYLVFDFCEHDLAGLLSNRKVRFSLSEIKKVMKGLMNGL  137 (376)
T ss_pred             HHHHHHHHhhccC------------------Cc--ccccceeeeeHHHhhhhHHHHhcCccccccHHHHHHHHHHHHHHH
Confidence            9999999987531                  11  123446999999999999999998767899999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN  433 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~  433 (588)
                      .|+|+..|+|||+||+|+||+.+     +.+||+|||+|+.+....... ....+..+-|..|.+||.+.+...     +
T Consensus       138 ~~iHr~kilHRDmKaaNvLIt~d-----gilklADFGlar~fs~~~n~~-kprytnrvvTLwYrppEllLG~r~-----y  206 (376)
T KOG0669|consen  138 YYIHRNKILHRDMKAANVLITKD-----GILKLADFGLARAFSTSKNVV-KPRYTNRVVTLWYRPPELLLGDRE-----Y  206 (376)
T ss_pred             HHHHHhhHHhhcccHhhEEEcCC-----ceEEeeccccccceecccccC-CCCcccceeeeecCCHHHhhcccc-----c
Confidence            99999999999999999999998     899999999998765422211 111224567999999999998763     6


Q ss_pred             CCcCchhhHHHHHHHHhcCCCCCcccccccc----------cccccc--------------CCCCC-------------C
Q psy4039         434 YSKSDAWTAGTVAYEIFGHDNPFYQSARNTD----------YEVNAL--------------PQLNT-------------N  476 (588)
Q Consensus       434 ~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~----------~~~~~~--------------~~~~~-------------~  476 (588)
                      +++.|||+.|||+.||++|.+-+.+......          +....|              ++++.             .
T Consensus       207 g~~iDiWgAgCimaeMwtrspimqgnteqqql~~Is~LcGs~tkevWP~~d~lpL~~sie~ePl~~~~~rkv~n~~kp~~  286 (376)
T KOG0669|consen  207 GPPIDIWGAGCIMAEMWTRSPIMQGNTEQQQLHLISQLCGSITKEVWPNVDNLPLYQSIELEPLPKGQKRKVKNRLKPYV  286 (376)
T ss_pred             CCcchhHhHHHHHHHHHccCccccCChHHHHHHHHHHHhccCCcccCCCcccchHHHhccCCCCCcchhhhhhhhccccc
Confidence            6789999999999999999988876321111          001111              11211             1


Q ss_pred             ccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccCCCCChhHHHHHHHhhhccccc
Q psy4039         477 VPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGATPSHNEIMQWLLTLTTKVLC  540 (588)
Q Consensus       477 ~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~~~~~~~~~~~l~~~~~~~~~  540 (588)
                      -.+++.+|+.++|..||.+|++++++++         |.||......-..+.+.+.+....++.
T Consensus       287 kd~~a~dLle~ll~~DP~kR~~ad~aln---------h~~F~kdp~pqanl~~ml~t~~~s~fe  341 (376)
T KOG0669|consen  287 KDDEALDLLEKLLKLDPTKRIDADQALN---------HDFFWKDPMPQANLQDMLSTHLQSMFE  341 (376)
T ss_pred             CChhHHHHHHHHhccCcccCcchHhhhc---------hhhhhcCCcchhhHHHHHHHhHHHHHH
Confidence            1347889999999999999999999999         999874443334555555554444433

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=100.00  E-value=3.5e-36  Score=315.20  Aligned_cols=269  Identities=19%  Similarity=0.204  Sum_probs=198.1

Q ss_pred             CCeE-EeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         196 DDIQ-IGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       196 ~~~~-~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      ++|. +.+.||.|+||+||+|.+.  ++.||||.+.......... ..+....+.  .....+.+|+.+++.+    +||
T Consensus         8 ~ry~~~~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~E~~~l~~l----~h~   80 (335)
T PTZ00024          8 ERYIQKGAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVT-KDRQLVGMC--GIHFTTLRELKIMNEI----KHE   80 (335)
T ss_pred             cchhhhhhcccCCCceeEEEEEECCCCCeEEEEEeeccccccccc-cchhhhccc--ccchhHHHHHHHHHhC----CCc
Confidence            5565 4678999999999999976  7899999986432221100 000000000  0122456799999887    899


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      ||+++++++....                            ..+++|||+.|+|.+++.... .+++.....++.|++.|
T Consensus        81 ~iv~~~~~~~~~~----------------------------~~~lv~e~~~~~l~~~l~~~~-~~~~~~~~~~~~ql~~a  131 (335)
T PTZ00024         81 NIMGLVDVYVEGD----------------------------FINLVMDIMASDLKKVVDRKI-RLTESQVKCILLQILNG  131 (335)
T ss_pred             ceeeeeEEEecCC----------------------------cEEEEEeccccCHHHHHHhcC-CCCHHHHHHHHHHHHHH
Confidence            9999999987532                            489999999999999997654 79999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCcc---------ccccccccccCCccccchhHHh
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSM---------QYSSADIELGGNVALMAPEVAL  423 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~---------~~~~~~~~~~GT~~Y~APE~l~  423 (588)
                      |.|||+.||+||||||+||+++.+     +.++|+|||+++........         ..........+++.|+|||++.
T Consensus       132 L~~LH~~~i~H~dl~~~nill~~~-----~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  206 (335)
T PTZ00024        132 LNVLHKWYFMHRDLSPANIFINSK-----GICKIADFGLARRYGYPPYSDTLSKDETMQRREEMTSKVVTLWYRAPELLM  206 (335)
T ss_pred             HHHHHhCCeecccccHHHeEECCC-----CCEEECCccceeecccccccccccccccccccccccccccccCCCCChhcc
Confidence            999999999999999999999987     78999999999865421100         0011112345788999999986


Q ss_pred             cCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccc---------------ccc---------------cccCCC
Q psy4039         424 ATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD---------------YEV---------------NALPQL  473 (588)
Q Consensus       424 ~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~---------------~~~---------------~~~~~~  473 (588)
                      +...     .+.++|||||||++|||++|.+||........               +..               ......
T Consensus       207 ~~~~-----~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (335)
T PTZ00024        207 GAEK-----YHFAVDMWSVGCIFAELLTGKPLFPGENEIDQLGRIFELLGTPNEDNWPQAKKLPLYTEFTPRKPKDLKTI  281 (335)
T ss_pred             cCCC-----CCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCchhhCcchhhcccccccCcCCcccHHHh
Confidence            5431     34689999999999999999999965321100               000               000011


Q ss_pred             CCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccC
Q psy4039         474 NTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       474 ~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~  519 (588)
                      ...++.++.++|.+||+.||++|||+++++.         |||++.
T Consensus       282 ~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~---------~~~~~~  318 (335)
T PTZ00024        282 FPNASDDAIDLLQSLLKLNPLERISAKEALK---------HEYFKS  318 (335)
T ss_pred             CcCCChHHHHHHHHHcCCCchhccCHHHHhc---------CcccCC
Confidence            2345788999999999999999999999998         999983

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=100.00  E-value=2.5e-36  Score=306.21  Aligned_cols=256  Identities=25%  Similarity=0.391  Sum_probs=201.8

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|.+.+.||+|+||.||+|...  +..||+|++........              .....+.+|..+++.+   .+|||
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~--------------~~~~~~~~e~~~~~~l---~~~~~   63 (280)
T cd05581           1 DDFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKE--------------KKVKYVKIEKEVLTRL---NGHPG   63 (280)
T ss_pred             CCceEeeeecCCCceEEEEEEEcCCCCEEEEEEechHhccch--------------HHHHHHHHHHHHHHhc---ccCCC
Confidence            47899999999999999999986  88999999843211100              0123456688888877   23999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++++.+..                            ..+++||++ +++|.+++...+ .+++..+..++.|++.|
T Consensus        64 i~~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~-~l~~~~~~~i~~ql~~~  114 (280)
T cd05581          64 IIKLYYTFQDEE----------------------------NLYFVLEYAPNGELLQYIRKYG-SLDEKCTRFYAAEILLA  114 (280)
T ss_pred             chhHHHHhcCCc----------------------------eEEEEEcCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence            999999886532                            489999999 789999998765 79999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccc---------------cccccccccCCcccc
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQ---------------YSSADIELGGNVALM  417 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~---------------~~~~~~~~~GT~~Y~  417 (588)
                      |.|||+.|++|+||||+||+++.+     +.++|+|||++..........               .........|+..|+
T Consensus       115 l~~Lh~~~~~H~dl~~~ni~i~~~-----~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (280)
T cd05581         115 LEYLHSKGIIHRDLKPENILLDKD-----MHIKITDFGTAKVLDPNSSPESNKGDATNIDSQIEKNRRRFASFVGTAEYV  189 (280)
T ss_pred             HHHHHHCCeeecCCCHHHeEECCC-----CCEEecCCccccccCCccccccCCCCCccccccccccccccccccCCcccc
Confidence            999999999999999999999987     789999999998754422100               001122456889999


Q ss_pred             chhHHhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccccc--cccCCCCCCccHHHHHHHHHhhhhCCCC
Q psy4039         418 APEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV--NALPQLNTNVPEVMRRLVAKLLENDPSD  495 (588)
Q Consensus       418 APE~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~--~~~~~~~~~~~~~l~~Li~~~L~~dP~~  495 (588)
                      |||+.....      .+.++||||||+++|++++|..||........+..  .....++..+++.+.+++.+||+.||++
T Consensus       190 ~Pe~~~~~~------~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~  263 (280)
T cd05581         190 SPELLNEKP------AGKSSDLWALGCIIYQMLTGKPPFRGSNEYLTFQKILKLEYSFPPNFPPDAKDLIEKLLVLDPQD  263 (280)
T ss_pred             CHHHhCCCC------CChhhhHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHhcCCCCCCccCHHHHHHHHHHhcCCHhh
Confidence            999986544      44679999999999999999999976432111111  2223456678999999999999999999


Q ss_pred             CCCH----HHHHHHHhhhhhcCCccc
Q psy4039         496 RPSA----ELAATVCQLYLWAPKHWL  517 (588)
Q Consensus       496 Rps~----~e~l~~L~~~~~~~h~w~  517 (588)
                      ||++    +++++         |||+
T Consensus       264 R~~~~~~~~~ll~---------~~~~  280 (280)
T cd05581         264 RLGVNEGYDELKA---------HPFF  280 (280)
T ss_pred             CCCcccCHHHHhc---------CCCC
Confidence            9999    99998         9996

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>KOG0986|consensus

Probab=100.00  E-value=3.5e-37  Score=315.06  Aligned_cols=256  Identities=24%  Similarity=0.360  Sum_probs=208.0

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCC
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENL  268 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l  268 (588)
                      +.++.+.|..-++||+||||.||-|..+  |+-||.|.+.+..           ..+.   .......+|..||+++   
T Consensus       180 qpvt~n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKR-----------iKkr---~ge~maLnEk~iL~kV---  242 (591)
T KOG0986|consen  180 QPVTKNTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLDKKR-----------IKKR---KGETMALNEKQILEKV---  242 (591)
T ss_pred             hhccccceeeeEEEecccccceeEEEEecchhhHHHHHHHHHH-----------HHHh---hhhHHhhHHHHHHHHh---
Confidence            5566688999999999999999998876  8899999884311           1111   1233456788899988   


Q ss_pred             CCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCC-CcHHHHHHHhc-CCCCHHHHHHHH
Q psy4039         269 PPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYN-TDLRNYLRERC-AQLSMHERVLLF  346 (588)
Q Consensus       269 ~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~-gsL~~~L~~~~-~~l~~~~~~~i~  346 (588)
                       +.|.||.|-..|+..+                            .+++||..|| |+|.-+|...+ ..+++..++.++
T Consensus       243 -~s~FiVslaYAfeTkd----------------------------~LClVLtlMNGGDLkfHiyn~g~~gF~e~ra~FYA  293 (591)
T KOG0986|consen  243 -SSPFIVSLAYAFETKD----------------------------ALCLVLTLMNGGDLKFHIYNHGNPGFDEQRARFYA  293 (591)
T ss_pred             -ccCcEEEEeeeecCCC----------------------------ceEEEEEeecCCceeEEeeccCCCCCchHHHHHHH
Confidence             8899999988887743                            4999999995 79998888753 479999999999


Q ss_pred             HHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCC
Q psy4039         347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP  426 (588)
Q Consensus       347 ~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~  426 (588)
                      .+|+.||++||+.+||.|||||+|||+|+.     ++++|+|.|+|..+..+....      ..+||.+|||||++....
T Consensus       294 AEi~cGLehlH~~~iVYRDLKPeNILLDd~-----GhvRISDLGLAvei~~g~~~~------~rvGT~GYMAPEvl~ne~  362 (591)
T KOG0986|consen  294 AEIICGLEHLHRRRIVYRDLKPENILLDDH-----GHVRISDLGLAVEIPEGKPIR------GRVGTVGYMAPEVLQNEV  362 (591)
T ss_pred             HHHHhhHHHHHhcceeeccCChhheeeccC-----CCeEeeccceEEecCCCCccc------cccCcccccCHHHHcCCc
Confidence            999999999999999999999999999998     999999999998887754331      358999999999998877


Q ss_pred             CCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccc------cccccCCCCCCccHHHHHHHHHhhhhCCCCCCC--
Q psy4039         427 GLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY------EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS--  498 (588)
Q Consensus       427 ~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~------~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps--  498 (588)
                      +      +...|+||+||++|||+.|+.||...-.....      .......+++.++++++++.+.+|++||.+|..  
T Consensus       363 Y------~~s~Dwf~lGCllYemi~G~sPFr~~KeKvk~eEvdrr~~~~~~ey~~kFS~eakslc~~LL~Kdp~~RLGcr  436 (591)
T KOG0986|consen  363 Y------DFSPDWFSLGCLLYEMIAGHSPFRQRKEKVKREEVDRRTLEDPEEYSDKFSEEAKSLCEGLLTKDPEKRLGCR  436 (591)
T ss_pred             c------cCCccHHHHHhHHHHHHcccCchhhhhhhhhHHHHHHHHhcchhhcccccCHHHHHHHHHHHccCHHHhccCC
Confidence            3      45699999999999999999999763211111      122333567889999999999999999999974  


Q ss_pred             ---HHHHHHHHhhhhhcCCcccc
Q psy4039         499 ---AELAATVCQLYLWAPKHWLY  518 (588)
Q Consensus       499 ---~~e~l~~L~~~~~~~h~w~~  518 (588)
                         ++++.+         ||+|+
T Consensus       437 g~ga~evk~---------HpfFk  450 (591)
T KOG0986|consen  437 GEGAQEVKE---------HPFFK  450 (591)
T ss_pred             CcCcchhhh---------Ccccc
Confidence               567766         88877

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=4.8e-36  Score=305.07  Aligned_cols=253  Identities=21%  Similarity=0.275  Sum_probs=197.4

Q ss_pred             CCeEEeeeecccCceeEEEEEEC------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCC
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLP  269 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~  269 (588)
                      ++|++.+.||+|+||.||+|.+.      +..||||.+......                .....+.+|+.+++.+    
T Consensus         4 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~----------------~~~~~~~~ei~~l~~l----   63 (284)
T cd05038           4 RHLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEE----------------QHRSDFEREIEILRTL----   63 (284)
T ss_pred             hhchhheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccch----------------HHHHHHHHHHHHHHhC----
Confidence            67888899999999999999875      678999998532110                0234567788888887    


Q ss_pred             CCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHH
Q psy4039         270 PHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQ  348 (588)
Q Consensus       270 ~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~q  348 (588)
                      .||||+++++++.+..                          ....+++|||+ +++|.+++......+++..+..++.|
T Consensus        64 ~~~~i~~~~~~~~~~~--------------------------~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  117 (284)
T cd05038          64 DHENIVKYKGVCEKPG--------------------------GRSLRLIMEYLPSGSLRDYLQRHRDQINLKRLLLFSSQ  117 (284)
T ss_pred             CCCChheEEeeeecCC--------------------------CCceEEEEecCCCCCHHHHHHhCccccCHHHHHHHHHH
Confidence            8999999999876521                          12489999999 57999999877556999999999999


Q ss_pred             HHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCC
Q psy4039         349 LLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGL  428 (588)
Q Consensus       349 l~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~  428 (588)
                      ++.||.|||++||+||||||+||+++.+     +.++|+|||++..........  .......++..|+|||.+.+..  
T Consensus       118 l~~aL~~lH~~~i~H~dl~p~nil~~~~-----~~~~l~dfg~~~~~~~~~~~~--~~~~~~~~~~~~~~Pe~~~~~~--  188 (284)
T cd05038         118 ICKGMDYLGSQRYIHRDLAARNILVESE-----DLVKISDFGLAKVLPEDKDYY--YVKEPGESPIFWYAPECLRTSK--  188 (284)
T ss_pred             HHHHHHHHHhCCeecCCCCHHhEEEcCC-----CCEEEcccccccccccCCcce--eccCCCCCcccccCcHHHccCC--
Confidence            9999999999999999999999999987     789999999998765322211  0111234566799999986554  


Q ss_pred             ccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccc------------------ccccccCCCCCCccHHHHHHHHHhhh
Q psy4039         429 FSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD------------------YEVNALPQLNTNVPEVMRRLVAKLLE  490 (588)
Q Consensus       429 ~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~------------------~~~~~~~~~~~~~~~~l~~Li~~~L~  490 (588)
                          .+.++|||||||++|||++|..|+........                  .......+.+..++.++.+++.+||+
T Consensus       189 ----~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~  264 (284)
T cd05038         189 ----FSSASDVWSFGVTLYELFTYGDPSQSPPAEFLRMIGIAQGQMIVTRLLELLKEGERLPRPPSCPDEVYDLMKLCWE  264 (284)
T ss_pred             ----CCcccchHHHhhhhheeeccCCCcccccchhccccccccccccHHHHHHHHHcCCcCCCCccCCHHHHHHHHHHhc
Confidence                44679999999999999999999865321110                  00111223345678899999999999


Q ss_pred             hCCCCCCCHHHHHHHHh
Q psy4039         491 NDPSDRPSAELAATVCQ  507 (588)
Q Consensus       491 ~dP~~Rps~~e~l~~L~  507 (588)
                      .||++|||+.++++.|+
T Consensus       265 ~~p~~Rpt~~ei~~~l~  281 (284)
T cd05038         265 AEPQDRPSFADLILIVD  281 (284)
T ss_pred             cChhhCCCHHHHHHHHh
Confidence            99999999999998776

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=100.00  E-value=7.2e-36  Score=298.26  Aligned_cols=249  Identities=26%  Similarity=0.368  Sum_probs=201.7

Q ss_pred             CeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCce
Q psy4039         197 DIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNV  274 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNI  274 (588)
                      +|++.+.||.|+||.||++.+.  +..||+|.+.......               .....+.+|+++++.+    +|||+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~---------------~~~~~~~~e~~~l~~l----~~~~~   61 (258)
T cd08215           1 KYEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSE---------------KEREDALNEVKILKKL----NHPNI   61 (258)
T ss_pred             CceEEeeeccCCCeEEEEEEEcCCCcEEEEEEeecccCCh---------------HHHHHHHHHHHHHHhc----CCCCh
Confidence            5888999999999999999997  8899999985322110               1223355688888887    89999


Q ss_pred             EEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCC-CcHHHHHHHh---cCCCCHHHHHHHHHHHH
Q psy4039         275 VVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYN-TDLRNYLRER---CAQLSMHERVLLFTQLL  350 (588)
Q Consensus       275 V~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~-gsL~~~L~~~---~~~l~~~~~~~i~~ql~  350 (588)
                      +++++.+.+.                            ...+++||+++ ++|.+++...   ...+++.++..++.+++
T Consensus        62 ~~~~~~~~~~----------------------------~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~  113 (258)
T cd08215          62 IKYYESFEEK----------------------------GKLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLC  113 (258)
T ss_pred             hheEEEEecC----------------------------CEEEEEEEecCCCcHHHHHHHhhccCCCcCHHHHHHHHHHHH
Confidence            9999988752                            24899999994 6999999875   35899999999999999


Q ss_pred             HHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCcc
Q psy4039         351 EGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFS  430 (588)
Q Consensus       351 ~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~  430 (588)
                      .||.|||++|++|+||+|+||+++.+     +.++|+|||++........     ......|++.|+|||.+.+..    
T Consensus       114 ~~l~~lh~~~~~H~dl~~~nil~~~~-----~~~~l~d~~~~~~~~~~~~-----~~~~~~~~~~y~~pe~~~~~~----  179 (258)
T cd08215         114 LALKYLHSRKILHRDIKPQNIFLTSN-----GLVKLGDFGISKVLSSTVD-----LAKTVVGTPYYLSPELCQNKP----  179 (258)
T ss_pred             HHHHHHHhCCEecccCChHHeEEcCC-----CcEEECCccceeecccCcc-----eecceeeeecccChhHhccCC----
Confidence            99999999999999999999999987     7899999999977654321     112356899999999987654    


Q ss_pred             CCCCCcCchhhHHHHHHHHhcCCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHh
Q psy4039         431 FVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       431 ~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~  507 (588)
                        .+.++||||+|+++|+|++|..||........   ......+.++..++.++.+++.+||..+|++|||+.++++   
T Consensus       180 --~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~ll~---  254 (258)
T cd08215         180 --YNYKSDIWSLGCVLYELCTLKHPFEGENLLELALKILKGQYPPIPSQYSSELRNLVSSLLQKDPEERPSIAQILQ---  254 (258)
T ss_pred             --CCccccHHHHHHHHHHHHcCCCCCCCCcHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHhc---
Confidence              44679999999999999999999966421111   1122344566688999999999999999999999999999   


Q ss_pred             hhhhcCCccc
Q psy4039         508 LYLWAPKHWL  517 (588)
Q Consensus       508 ~~~~~~h~w~  517 (588)
                            |||+
T Consensus       255 ------~~~~  258 (258)
T cd08215         255 ------SPFI  258 (258)
T ss_pred             ------CCCC
Confidence                  9996

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1e-35  Score=297.09  Aligned_cols=248  Identities=23%  Similarity=0.352  Sum_probs=200.9

Q ss_pred             CeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCce
Q psy4039         197 DIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNV  274 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNI  274 (588)
                      +|++.+.||+|++|.||++.+.  ++.||||.+.......               .....+.+|++++.++    +|||+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~---------------~~~~~~~~e~~~l~~l----~~~~i   61 (254)
T cd06627           1 NYQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKE---------------EALKSIMQEIDLLKNL----KHPNI   61 (254)
T ss_pred             CceeeeEEcccCCeEEEEEEEcCCCcEEEEEEecccccCH---------------HHHHHHHHHHHHHHhC----CCCCc
Confidence            4788999999999999999886  6899999985432110               0223456788888887    89999


Q ss_pred             EEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         275 VVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       275 V~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      +++++++.+..                            ..+++||++ +++|.+++.... .+++..+..++.|++.||
T Consensus        62 ~~~~~~~~~~~----------------------------~~~~v~e~~~~~~L~~~~~~~~-~l~~~~~~~~~~~i~~~l  112 (254)
T cd06627          62 VKYIGSIETSD----------------------------SLYIILEYAENGSLRQIIKKFG-PFPESLVAVYVYQVLQGL  112 (254)
T ss_pred             cEEEEEEEeCC----------------------------EEEEEEecCCCCcHHHHHHhcc-CCCHHHHHHHHHHHHHHH
Confidence            99999887631                            489999999 569999997653 899999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN  433 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~  433 (588)
                      .|||+.||+||||||+||+++.+     +.++|+|||++.........     .....|+..|+|||...+..      .
T Consensus       113 ~~lH~~~i~H~dl~p~ni~i~~~-----~~~~l~d~~~~~~~~~~~~~-----~~~~~~~~~y~~pe~~~~~~------~  176 (254)
T cd06627         113 AYLHEQGVIHRDIKAANILTTKD-----GVVKLADFGVATKLNDVSKD-----DASVVGTPYWMAPEVIEMSG------A  176 (254)
T ss_pred             HHHhhCCcccCCCCHHHEEECCC-----CCEEEeccccceecCCCccc-----ccccccchhhcCHhhhcCCC------C
Confidence            99999999999999999999986     78999999999876543221     12356889999999986543      3


Q ss_pred             CCcCchhhHHHHHHHHhcCCCCCccccccc---cccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhh
Q psy4039         434 YSKSDAWTAGTVAYEIFGHDNPFYQSARNT---DYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYL  510 (588)
Q Consensus       434 ~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~---~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~  510 (588)
                      ..++||||+|+++|+|++|..||.......   .......+.++..+++.+.+++.+||+.+|++|||+.+++.      
T Consensus       177 ~~~~Dv~~lG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l~------  250 (254)
T cd06627         177 STASDIWSLGCTVIELLTGNPPYYDLNPMAALFRIVQDDHPPLPEGISPELKDFLMQCFQKDPNLRPTAKQLLK------  250 (254)
T ss_pred             CcchhHHHHHHHHHHHHhCCCCCCCccHHHHHHHHhccCCCCCCCCCCHHHHHHHHHHHhCChhhCcCHHHHhc------
Confidence            467999999999999999999997532111   11123344566788999999999999999999999999998      


Q ss_pred             hcCCccc
Q psy4039         511 WAPKHWL  517 (588)
Q Consensus       511 ~~~h~w~  517 (588)
                         |||+
T Consensus       251 ---~~~~  254 (254)
T cd06627         251 ---HPWI  254 (254)
T ss_pred             ---CCCC
Confidence               9996

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=100.00  E-value=4.7e-36  Score=304.51  Aligned_cols=250  Identities=20%  Similarity=0.260  Sum_probs=193.3

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC-------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR-------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVEN  267 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~-------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~  267 (588)
                      .++|++...||+|+||.||+|+.+       ...||+|.+....   . ..            ....+.+|+.+++.+  
T Consensus         4 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~---~-~~------------~~~~~~~E~~~l~~l--   65 (275)
T cd05046           4 RSNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTK---D-EN------------LQSEFRRELDMFRKL--   65 (275)
T ss_pred             hHhceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCcc---c-hH------------HHHHHHHHHHHHHhc--
Confidence            378999999999999999999975       4679999874211   0 00            123456688999887  


Q ss_pred             CCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc--------CCCC
Q psy4039         268 LPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC--------AQLS  338 (588)
Q Consensus       268 l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~--------~~l~  338 (588)
                        +||||+++++++.+..                            ..++||||+ +|+|.+++....        ..++
T Consensus        66 --~h~~iv~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~  115 (275)
T cd05046          66 --SHKNVVRLLGLCREAE----------------------------PHYMILEYTDLGDLKQFLRATKSKDEKLKPPPLS  115 (275)
T ss_pred             --CCcceeeeEEEECCCC----------------------------cceEEEEecCCCcHHHHHHhcccccccccccCCC
Confidence              8999999999887632                            389999999 589999998653        1589


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccc
Q psy4039         339 MHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMA  418 (588)
Q Consensus       339 ~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~A  418 (588)
                      +..+..++.|++.||.|||+++|+||||||+||+++.+     +.++|+|||+++........    ......++..|+|
T Consensus       116 ~~~~~~~~~~l~~~l~~LH~~~i~H~dlkp~Nili~~~-----~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~y~~  186 (275)
T cd05046         116 TKQKVALCTQIALGMDHLSNARFVHRDLAARNCLVSSQ-----REVKVSLLSLSKDVYNSEYY----KLRNALIPLRWLA  186 (275)
T ss_pred             HHHHHHHHHHHHHHHHHhhhcCcccCcCccceEEEeCC-----CcEEEcccccccccCccccc----ccCCceeEEeecC
Confidence            99999999999999999999999999999999999987     78999999998754321111    1113356778999


Q ss_pred             hhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCccccccccccc----cccCCCCCCccHHHHHHHHHhhhhCC
Q psy4039         419 PEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTDYEV----NALPQLNTNVPEVMRRLVAKLLENDP  493 (588)
Q Consensus       419 PE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~~~~----~~~~~~~~~~~~~l~~Li~~~L~~dP  493 (588)
                      ||.+.+..      ...++|||||||++|+|++ |..||...........    ......+..+|..+.+++.+||+.||
T Consensus       187 PE~~~~~~------~~~~~Di~slG~~l~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~p  260 (275)
T cd05046         187 PEAVQEDD------FSTKSDVWSFGVLMWEVFTQGELPFYGLSDEEVLNRLQAGKLELPVPEGCPSRLYKLMTRCWAVNP  260 (275)
T ss_pred             hhhhccCC------CCchhhHHHHHHHHHHHHhCCCCCccccchHHHHHHHHcCCcCCCCCCCCCHHHHHHHHHHcCCCc
Confidence            99987554      3467999999999999998 7889865322111110    11122345788999999999999999


Q ss_pred             CCCCCHHHHHHHHh
Q psy4039         494 SDRPSAELAATVCQ  507 (588)
Q Consensus       494 ~~Rps~~e~l~~L~  507 (588)
                      ++|||+.++++.+.
T Consensus       261 ~~Rp~~~~~l~~l~  274 (275)
T cd05046         261 KDRPSFSELVSALG  274 (275)
T ss_pred             ccCCCHHHHHHHhc
Confidence            99999999988553

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=100.00  E-value=1.2e-35  Score=295.02  Aligned_cols=245  Identities=27%  Similarity=0.380  Sum_probs=197.5

Q ss_pred             CeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCce
Q psy4039         197 DIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNV  274 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNI  274 (588)
                      +|+..+.||+|++|.||++.+.  +..|++|++.....                 .....+.+|+.+++.+    +||||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~-----------------~~~~~~~~e~~~l~~l----~~~~i   59 (253)
T cd05122           1 LFEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESK-----------------EKKEKIINEIQILKKC----KHPNI   59 (253)
T ss_pred             CceeeeeeccCCceEEEEEEECCCCcEEEEEEecccch-----------------hHHHHHHHHHHHHHhC----CCCCE
Confidence            4788899999999999999997  78999999853211                 0223456788888887    89999


Q ss_pred             EEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCC-CcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         275 VVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYN-TDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       275 V~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~-gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      +++++++.+..                            ..++++||++ ++|.+++......+++..+..++.|+++||
T Consensus        60 ~~~~~~~~~~~----------------------------~~~l~~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l  111 (253)
T cd05122          60 VKYYGSYLKKD----------------------------ELWIVMEFCSGGSLKDLLKSTNQTLTESQIAYVCKELLKGL  111 (253)
T ss_pred             eEEEEEEecCC----------------------------eEEEEEecCCCCcHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Confidence            99999887632                            3899999995 899999987645899999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN  433 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~  433 (588)
                      .|||++|++||||+|+||+++.+     +.++|+|||.+........      .....|+..|+|||++.+..      .
T Consensus       112 ~~lh~~~i~h~dl~p~ni~i~~~-----~~~~l~d~~~~~~~~~~~~------~~~~~~~~~~~~PE~~~~~~------~  174 (253)
T cd05122         112 EYLHSNGIIHRDIKAANILLTSD-----GEVKLIDFGLSAQLSDTKA------RNTMVGTPYWMAPEVINGKP------Y  174 (253)
T ss_pred             HHhhcCCEecCCCCHHHEEEccC-----CeEEEeecccccccccccc------ccceecCCcccCHHHHcCCC------C
Confidence            99999999999999999999987     7899999999977654321      12456889999999987654      4


Q ss_pred             CCcCchhhHHHHHHHHhcCCCCCcccccccc---ccccccCCCCC--CccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhh
Q psy4039         434 YSKSDAWTAGTVAYEIFGHDNPFYQSARNTD---YEVNALPQLNT--NVPEVMRRLVAKLLENDPSDRPSAELAATVCQL  508 (588)
Q Consensus       434 ~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~---~~~~~~~~~~~--~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~  508 (588)
                      +.++||||||+++|+|++|..||........   ......+..+.  .++..+.+++.+||+.||++|||+.+++.    
T Consensus       175 ~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~t~~~~l~----  250 (253)
T cd05122         175 DYKADIWSLGITAIELAEGKPPYSELPPMKALFKIATNGPPGLRNPEKWSDEFKDFLKKCLQKNPEKRPTAEQLLK----  250 (253)
T ss_pred             CccccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHhcCCCCcCcccccCHHHHHHHHHHccCChhhCCCHHHHhc----
Confidence            5689999999999999999999976411110   11111222222  24889999999999999999999999998    


Q ss_pred             hhhcCCcc
Q psy4039         509 YLWAPKHW  516 (588)
Q Consensus       509 ~~~~~h~w  516 (588)
                           |||
T Consensus       251 -----~~~  253 (253)
T cd05122         251 -----HPF  253 (253)
T ss_pred             -----CCC
Confidence                 998

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=100.00  E-value=6.6e-36  Score=312.89  Aligned_cols=248  Identities=22%  Similarity=0.283  Sum_probs=194.7

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||.|+||.||+|.+.  +..||||.+......               ....+.+.+|+.+++.+    +|||
T Consensus        10 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~---------------~~~~~~~~~E~~~l~~l----~hpn   70 (328)
T cd07856          10 NRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFST---------------PVLAKRTYRELKLLKHL----RHEN   70 (328)
T ss_pred             cceEEEEeecccCCeEEEEEEECCCCCEEEEEEecccccc---------------cchhHHHHHHHHHHHhc----CCCC
Confidence            78999999999999999999876  789999987431110               01223455688999887    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      |++++++|....                           ...+++|||++++|.+++...  .+++..+..++.|+++||
T Consensus        71 iv~~~~~~~~~~---------------------------~~~~lv~e~~~~~L~~~~~~~--~~~~~~~~~~~~ql~~aL  121 (328)
T cd07856          71 IISLSDIFISPL---------------------------EDIYFVTELLGTDLHRLLTSR--PLEKQFIQYFLYQILRGL  121 (328)
T ss_pred             eeeEeeeEecCC---------------------------CcEEEEeehhccCHHHHHhcC--CCCHHHHHHHHHHHHHHH
Confidence            999999886521                           138899999998999988754  788999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN  433 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~  433 (588)
                      .|||+++|+||||||+|||++.+     +.++|+|||++.......        ....+++.|+|||++.+...     .
T Consensus       122 ~~LH~~~iiH~dl~p~Nili~~~-----~~~~l~dfg~~~~~~~~~--------~~~~~~~~y~aPE~~~~~~~-----~  183 (328)
T cd07856         122 KYVHSAGVVHRDLKPSNILINEN-----CDLKICDFGLARIQDPQM--------TGYVSTRYYRAPEIMLTWQK-----Y  183 (328)
T ss_pred             HHHHhCCcccCCCCHHHEeECCC-----CCEEeCccccccccCCCc--------CCCcccccccCceeeeccCC-----c
Confidence            99999999999999999999977     789999999987543211        13457889999998754221     4


Q ss_pred             CCcCchhhHHHHHHHHhcCCCCCcccccccc--------------------------c--cccccC-----CCCCCccHH
Q psy4039         434 YSKSDAWTAGTVAYEIFGHDNPFYQSARNTD--------------------------Y--EVNALP-----QLNTNVPEV  480 (588)
Q Consensus       434 ~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~--------------------------~--~~~~~~-----~~~~~~~~~  480 (588)
                      +.++|||||||++|+|++|+.||........                          +  ......     .....++++
T Consensus       184 ~~~~Dv~slG~il~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (328)
T cd07856         184 DVEVDIWSAGCIFAEMLEGKPLFPGKDHVNQFSIITDLLGTPPDDVINTICSENTLRFVQSLPKREPVPFSEKFKNADPS  263 (328)
T ss_pred             CcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhccchhhHHHHhhccccCCCcHHHHcCCCCHH
Confidence            5689999999999999999999965321000                          0  000000     111356789


Q ss_pred             HHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCcccc
Q psy4039         481 MRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLY  518 (588)
Q Consensus       481 l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~  518 (588)
                      +.++|.+||+.+|++||++++++.         |||+.
T Consensus       264 ~~~li~~~l~~~P~~R~t~~ell~---------~~~~~  292 (328)
T cd07856         264 AIDLLEKMLVFDPQKRISAAEALA---------HPYLA  292 (328)
T ss_pred             HHHHHHHHcCCChhhCCCHHHHhc---------CCccc
Confidence            999999999999999999999999         99997

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=100.00  E-value=4.5e-36  Score=305.18  Aligned_cols=249  Identities=26%  Similarity=0.336  Sum_probs=196.0

Q ss_pred             eEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceE
Q psy4039         198 IQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVV  275 (588)
Q Consensus       198 ~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV  275 (588)
                      |++.+.||.|++|.||+|.+.  +..+|+|.+.......               .....+.+|+.+++.+    +||||+
T Consensus         1 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~---------------~~~~~~~~e~~~l~~l----~~~~i~   61 (283)
T cd05118           1 YQKLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESE---------------GIPKTALREIKLLKEL----NHPNII   61 (283)
T ss_pred             CccceeeecCCCceEEEEEcCCCCcEEEEEEeccccccc---------------hhHHHHHHHHHHHHHh----cCCCcc
Confidence            566788999999999999986  7899999985322110               1223456688888887    899999


Q ss_pred             EEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q psy4039         276 VMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTH  355 (588)
Q Consensus       276 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~y  355 (588)
                      ++++++.+.                            ...+++|||+.++|.+++......+++..+..++.|+++||.|
T Consensus        62 ~~~~~~~~~----------------------------~~~~~v~e~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~~l~~  113 (283)
T cd05118          62 KLLDVFRHK----------------------------GDLYLVFEFMDTDLYKLIKDRQRGLPESLIKSYLYQLLQGLAF  113 (283)
T ss_pred             hHHHhhccC----------------------------CCEEEEEeccCCCHHHHHHhhcccCCHHHHHHHHHHHHHHHHH
Confidence            999988763                            2489999999889999998765689999999999999999999


Q ss_pred             HHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCC
Q psy4039         356 LNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS  435 (588)
Q Consensus       356 LH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~  435 (588)
                      ||+++|+|+||||+||+++.+     +.++|+|||.+........ ..    ....++..|+|||.+.+...     .+.
T Consensus       114 LH~~~i~H~dl~p~nili~~~-----~~~~l~df~~~~~~~~~~~-~~----~~~~~~~~~~~PE~~~~~~~-----~~~  178 (283)
T cd05118         114 CHSHGILHRDLKPENLLINTE-----GVLKLADFGLARSFGSPVR-PY----THYVVTRWYRAPELLLGDKG-----YST  178 (283)
T ss_pred             HHHCCeeecCcCHHHEEECCC-----CcEEEeeeeeeEecCCCcc-cc----cCccCcccccCcHHHhcCCC-----CCc
Confidence            999999999999999999987     7899999999977654321 11    13457889999999876421     457


Q ss_pred             cCchhhHHHHHHHHhcCCCCCccccccccc---------------c-----------------ccccCCCCCCccHHHHH
Q psy4039         436 KSDAWTAGTVAYEIFGHDNPFYQSARNTDY---------------E-----------------VNALPQLNTNVPEVMRR  483 (588)
Q Consensus       436 ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~---------------~-----------------~~~~~~~~~~~~~~l~~  483 (588)
                      ++||||+|+++|+|++|+.||........+               .                 ..........++.++.+
T Consensus       179 ~~Di~slG~~l~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (283)
T cd05118         179 PVDIWSVGCIFAELLSRRPLFPGKSEIDQLFKIFRTLGTPDPEVWPKFTSLARNYKFSFPKKAGMPLPKLFPNASPQALD  258 (283)
T ss_pred             hhHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCchHhcccchhhhhhhhhhhccccccCHHHhhhhhCHHHHH
Confidence            899999999999999999999653210000               0                 00001122357889999


Q ss_pred             HHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccc
Q psy4039         484 LVAKLLENDPSDRPSAELAATVCQLYLWAPKHWL  517 (588)
Q Consensus       484 Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~  517 (588)
                      +|.+||+.||.+||++++++.         |||+
T Consensus       259 ~i~~~l~~~P~~Rp~~~~ll~---------~~~~  283 (283)
T cd05118         259 LLSQMLHYDPHKRITAEQALA---------HPYF  283 (283)
T ss_pred             HHHHHhccCcccCcCHHHHhh---------CCCC
Confidence            999999999999999999999         9996

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>KOG0584|consensus

Probab=100.00  E-value=5e-37  Score=326.09  Aligned_cols=251  Identities=21%  Similarity=0.322  Sum_probs=197.7

Q ss_pred             eEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceE
Q psy4039         198 IQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVV  275 (588)
Q Consensus       198 ~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV  275 (588)
                      .+...+||+|+|-+||+|.+.  |.+||--.++.           +.+.+.  +...+++..|+.+|+.|    +|||||
T Consensus        42 ~k~~evLGrGafKtVYka~De~~giEVAWnqvk~-----------~d~~q~--~~~leR~~~Ev~lLKsL----~H~NIi  104 (632)
T KOG0584|consen   42 LKFDEVLGRGAFKTVYKAFDEEEGIEVAWNQVKI-----------RDVTQS--PEELERLYSEVHLLKSL----KHPNII  104 (632)
T ss_pred             eehhhhcccccceeeeeccccccchhhHHHHHhH-----------HHhhcC--hHHHHHHHHHHHHHccC----CCCcee
Confidence            355679999999999999987  65666433211           111111  11236778899999997    999999


Q ss_pred             EEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy4039         276 VMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVT  354 (588)
Q Consensus       276 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~  354 (588)
                      ++|+++.+..                          +.++.+|+|.+ .|+|..|+++.+ .++.+....|++||++||.
T Consensus       105 rfy~SW~d~~--------------------------n~~in~iTEL~TSGtLr~Y~kk~~-~vn~kaik~W~RQILkGL~  157 (632)
T KOG0584|consen  105 RFYDSWVDTD--------------------------NKTINFITELFTSGTLREYRKKHR-RVNIKAIKSWCRQILKGLV  157 (632)
T ss_pred             eeeeheecCC--------------------------CceeeeeeecccCCcHHHHHHHhc-cCCHHHHHHHHHHHHHHhh
Confidence            9999998742                          34689999999 799999999876 8999999999999999999


Q ss_pred             HHHhC--CceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         355 HLNMH--RTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       355 yLH~~--~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |||++  .|||||||.+||+|+.+.    |.+||+|+|+|......       ......|||.|||||+....       
T Consensus       158 yLHs~~PPIIHRDLKCDNIFinG~~----G~VKIGDLGLAtl~r~s-------~aksvIGTPEFMAPEmYEE~-------  219 (632)
T KOG0584|consen  158 YLHSQDPPIIHRDLKCDNIFVNGNL----GEVKIGDLGLATLLRKS-------HAKSVIGTPEFMAPEMYEEN-------  219 (632)
T ss_pred             hhhcCCCCccccccccceEEEcCCc----CceeecchhHHHHhhcc-------ccceeccCccccChHHHhhh-------
Confidence            99987  799999999999998764    89999999999875432       12247899999999998743       


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCccccc-ccccccc---ccC-CCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHh
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSAR-NTDYEVN---ALP-QLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~-~~~~~~~---~~~-~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~  507 (588)
                      |++.+||||||.+++||+|+..||..... ...|+..   ..| .+..--.++++++|.+||.. ...|||+.++|+   
T Consensus       220 YnE~VDVYaFGMCmLEMvT~eYPYsEC~n~AQIYKKV~SGiKP~sl~kV~dPevr~fIekCl~~-~~~R~sa~eLL~---  295 (632)
T KOG0584|consen  220 YNELVDVYAFGMCMLEMVTSEYPYSECTNPAQIYKKVTSGIKPAALSKVKDPEVREFIEKCLAT-KSERLSAKELLK---  295 (632)
T ss_pred             cchhhhhhhhhHHHHHHHhccCChhhhCCHHHHHHHHHcCCCHHHhhccCCHHHHHHHHHHhcC-chhccCHHHHhh---
Confidence            66889999999999999999999976422 2222221   111 12222357899999999999 999999999999   


Q ss_pred             hhhhcCCccccCC
Q psy4039         508 LYLWAPKHWLYGA  520 (588)
Q Consensus       508 ~~~~~~h~w~~~~  520 (588)
                            ||||...
T Consensus       296 ------d~Ff~~d  302 (632)
T KOG0584|consen  296 ------DPFFDED  302 (632)
T ss_pred             ------Chhhccc
Confidence                  9999843

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=100.00  E-value=5.9e-36  Score=304.81  Aligned_cols=248  Identities=25%  Similarity=0.345  Sum_probs=190.7

Q ss_pred             eEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceE
Q psy4039         198 IQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVV  275 (588)
Q Consensus       198 ~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV  275 (588)
                      |++.+.||+|+||+||+|...  ++.||||.+......                .......+|+..+..+   ..||||+
T Consensus         1 y~~~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~----------------~~~~~~~~e~~~l~~~---~~h~~i~   61 (283)
T cd07830           1 YKVIKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYS----------------WEECMNLREVKSLRKL---NEHPNIV   61 (283)
T ss_pred             CeeheeeccCCceEEEEEEECCCCcEEEEEEehhhccc----------------hhHHHHHHHHHHHHhc---cCCCCch
Confidence            678899999999999999986  688999998432110                0111223577777776   2399999


Q ss_pred             EEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhc-CCCCHHHHHHHHHHHHHHHH
Q psy4039         276 VMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERC-AQLSMHERVLLFTQLLEGVT  354 (588)
Q Consensus       276 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~-~~l~~~~~~~i~~ql~~gL~  354 (588)
                      ++++++.+..                            ..++||||++|+|.+++.... ..+++.++..++.|++.||.
T Consensus        62 ~~~~~~~~~~----------------------------~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  113 (283)
T cd07830          62 KLKEVFREND----------------------------ELYFVFEYMEGNLYQLMKDRKGKPFSESVIRSIIYQILQGLA  113 (283)
T ss_pred             hHHHHhhcCC----------------------------cEEEEEecCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHH
Confidence            9999887621                            489999999999999998753 47899999999999999999


Q ss_pred             HHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCC
Q psy4039         355 HLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY  434 (588)
Q Consensus       355 yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~  434 (588)
                      |||+++++|+||||+||+++++     +.++|+|||++.........      ....|+..|+|||++.....     .+
T Consensus       114 ~Lh~~~i~H~dl~~~ni~i~~~-----~~~~l~d~~~~~~~~~~~~~------~~~~~~~~~~aPE~~~~~~~-----~~  177 (283)
T cd07830         114 HIHKHGFFHRDLKPENLLVSGP-----EVVKIADFGLAREIRSRPPY------TDYVSTRWYRAPEILLRSTS-----YS  177 (283)
T ss_pred             HHHHCCcccCCCChhhEEEcCC-----CCEEEeecccceeccCCCCc------CCCCCcccccCceeeecCcC-----cC
Confidence            9999999999999999999987     89999999999765432111      13458889999998854331     34


Q ss_pred             CcCchhhHHHHHHHHhcCCCCCccccccccc-------------------------c--c-----cccCCCCCCccHHHH
Q psy4039         435 SKSDAWTAGTVAYEIFGHDNPFYQSARNTDY-------------------------E--V-----NALPQLNTNVPEVMR  482 (588)
Q Consensus       435 ~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~-------------------------~--~-----~~~~~~~~~~~~~l~  482 (588)
                      .++|+||||+++|||++|.+||........+                         .  .     ..........+.++.
T Consensus       178 ~~~Di~s~G~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (283)
T cd07830         178 SPVDIWALGCIMAELYTLRPLFPGSSEIDQLYKICSVLGTPTKQDWPEGYKLASKLGFRFPQFAPTSLHQLIPNASPEAI  257 (283)
T ss_pred             CccchhhHHHHHHHHHhCCCccCCCChHHHHHHHHHhcCCCChhhhhhHhhhhccccccccccccccHHHHcccCCHHHH
Confidence            6899999999999999999998543111000                         0  0     000011122367899


Q ss_pred             HHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccc
Q psy4039         483 RLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWL  517 (588)
Q Consensus       483 ~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~  517 (588)
                      +++.+||+.||++|||+++++.         |||+
T Consensus       258 ~li~~cl~~~p~~Rpt~~ei~~---------~~~~  283 (283)
T cd07830         258 DLIKDMLRWDPKKRPTASQALQ---------HPYF  283 (283)
T ss_pred             HHHHHhcccCcccCCCHHHHhh---------CCCC
Confidence            9999999999999999999999         9996

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>KOG3653|consensus

Probab=100.00  E-value=5.5e-37  Score=315.74  Aligned_cols=261  Identities=21%  Similarity=0.257  Sum_probs=198.2

Q ss_pred             ccccCCeEEeeeecccCceeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCC
Q psy4039         192 DVKVDDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPH  271 (588)
Q Consensus       192 ~i~~~~~~~~~~IG~G~fG~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~H  271 (588)
                      -..++..++.++||+|+||.||+|.+.++.||||++..                    ..++.+.+|-+|....  .++|
T Consensus       206 l~~l~pl~l~eli~~Grfg~V~KaqL~~~~VAVKifp~--------------------~~kqs~~~Ek~Iy~lp--~m~h  263 (534)
T KOG3653|consen  206 LLELDPLQLLELIGRGRFGCVWKAQLDNRLVAVKIFPE--------------------QEKQSFQNEKNIYSLP--GMKH  263 (534)
T ss_pred             cccCCchhhHHHhhcCccceeehhhccCceeEEEecCH--------------------HHHHHHHhHHHHHhcc--Cccc
Confidence            34567788899999999999999999999999999842                    1334566677766654  2589


Q ss_pred             CceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy4039         272 PNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLL  350 (588)
Q Consensus       272 pNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~  350 (588)
                      +||++++++-..                        |....+.+++|++|. .|||.+||+.+  .++|.....|+..|+
T Consensus       264 ~nIl~Fi~~ekr------------------------~t~~~~eywLVt~fh~kGsL~dyL~~n--tisw~~~cria~Sma  317 (534)
T KOG3653|consen  264 ENILQFIGAEKR------------------------GTADRMEYWLVTEFHPKGSLCDYLKAN--TISWNSLCRIAESMA  317 (534)
T ss_pred             hhHHHhhchhcc------------------------CCccccceeEEeeeccCCcHHHHHHhc--cccHHHHHHHHHHHH
Confidence            999999977543                        333355699999999 79999999988  899999999999999


Q ss_pred             HHHHHHHhC---------CceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhH
Q psy4039         351 EGVTHLNMH---------RTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEV  421 (588)
Q Consensus       351 ~gL~yLH~~---------~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~  421 (588)
                      +||+|||+.         .|+|||||+.|||+.+|     .++.|+|||+|..+..+.....+   ...+||..|||||+
T Consensus       318 rGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~D-----lTccIaDFGLAl~~~p~~~~~d~---~~qVGT~RYMAPEv  389 (534)
T KOG3653|consen  318 RGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKND-----LTCCIADFGLALRLEPGKPQGDT---HGQVGTRRYMAPEV  389 (534)
T ss_pred             HHHHHhcccCCcCCCCCCccccccccccceEEccC-----CcEEeeccceeEEecCCCCCcch---hhhhhhhhhcCHHH
Confidence            999999973         79999999999999998     89999999999988765443222   24789999999999


Q ss_pred             HhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCC------------Cccc---------cccccccccccCCCCCC----
Q psy4039         422 ALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNP------------FYQS---------ARNTDYEVNALPQLNTN----  476 (588)
Q Consensus       422 l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~P------------f~~~---------~~~~~~~~~~~~~~~~~----  476 (588)
                      +.+...........+.||||+|.++|||++.-.-            |...         ..........+|.++..    
T Consensus       390 LEgainl~d~~Afkr~DvYamgLVLWEi~SRC~~~~~~~vp~Yqlpfe~evG~hPt~e~mq~~VV~kK~RP~~p~~W~~h  469 (534)
T KOG3653|consen  390 LEGAINLQDRDAFKRIDVYAMGLVLWEIASRCTDADPGPVPEYQLPFEAEVGNHPTLEEMQELVVRKKQRPKIPDAWRKH  469 (534)
T ss_pred             HhhhcccccHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcccCchhHHhcCCCCHHHHHHHHHhhccCCCChhhhhcC
Confidence            9876532111112357999999999999974322            2211         11112223344444432    


Q ss_pred             -ccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhh
Q psy4039         477 -VPEVMRRLVAKLLENDPSDRPSAELAATVCQL  508 (588)
Q Consensus       477 -~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~  508 (588)
                       -...+++.+..||..||+.|.|+.-+.+-+..
T Consensus       470 ~~~~~l~et~EeCWDhDaeARLTA~Cv~eR~~~  502 (534)
T KOG3653|consen  470 AGMAVLCETIEECWDHDAEARLTAGCVEERMAE  502 (534)
T ss_pred             ccHHHHHHHHHHHcCCchhhhhhhHHHHHHHHH
Confidence             23458899999999999999999877665443

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=5.8e-36  Score=300.34  Aligned_cols=241  Identities=18%  Similarity=0.196  Sum_probs=181.9

Q ss_pred             eeecccCceeEEEEEECCe------------eEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCC
Q psy4039         202 KFIAKGTNAVVYEATFRGV------------EYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLP  269 (588)
Q Consensus       202 ~~IG~G~fG~Vy~a~~~g~------------~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~  269 (588)
                      +.||+|+||.||+|.+...            .|++|.+....               .   ....+.+|+.+++.+    
T Consensus         1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~---------------~---~~~~~~~e~~~l~~l----   58 (259)
T cd05037           1 EHLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDH---------------R---DSLAFFETASLMSQL----   58 (259)
T ss_pred             CcccccccceEEEEEEeccCCccccCCccceeeeeeccccch---------------h---hHHHHHHHHHHHHcC----
Confidence            4699999999999999732            47888763211               0   134566788888877    


Q ss_pred             CCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHH
Q psy4039         270 PHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQ  348 (588)
Q Consensus       270 ~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~q  348 (588)
                      +||||+++++++.. .                            ..++||||+ +|+|.+++......+++..+..++.|
T Consensus        59 ~h~~i~~~~~~~~~-~----------------------------~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~  109 (259)
T cd05037          59 SHKHLVKLYGVCVR-D----------------------------ENIMVEEYVKFGPLDVFLHREKNNVSLHWKLDVAKQ  109 (259)
T ss_pred             CCcchhheeeEEec-C----------------------------CcEEEEEcCCCCcHHHHHHhhccCCCHHHHHHHHHH
Confidence            89999999998765 1                            268999999 68999999876557999999999999


Q ss_pred             HHHHHHHHHhCCceeccCCCCcEEEcCCCC--CCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCC
Q psy4039         349 LLEGVTHLNMHRTAHRDLKSDNILLDCSED--NTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP  426 (588)
Q Consensus       349 l~~gL~yLH~~~IvHrDLKp~NILld~~~~--~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~  426 (588)
                      |+.||.|||++||+||||||+|||++.+..  .....+||+|||++......         ....++..|+|||++.+..
T Consensus       110 i~~~l~~LH~~~i~H~dlkp~Nill~~~~~~~~~~~~~kl~Dfg~a~~~~~~---------~~~~~~~~y~aPE~~~~~~  180 (259)
T cd05037         110 LASALHYLEDKKLVHGNVCGKNILVARYGLNEGYVPFIKLSDPGIPITVLSR---------EERVERIPWIAPECIRNGQ  180 (259)
T ss_pred             HHHHHHHHhhCCeecccCccceEEEecCccccCCceeEEeCCCCcccccccc---------cccccCCCccChhhhcCCC
Confidence            999999999999999999999999987631  11237999999999764331         1244677899999987652


Q ss_pred             CCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccccc-ccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHH
Q psy4039         427 GLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTDYE-VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAAT  504 (588)
Q Consensus       427 ~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~~~-~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~  504 (588)
                      ..    .+.++|||||||++|||++ |..||.......... .......+......+.+++.+||..+|.+|||+.++++
T Consensus       181 ~~----~~~~~Di~slG~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~  256 (259)
T cd05037         181 AS----LTIAADKWSFGTTLLEICSNGEEPLSTLSSSEKERFYQDQHRLPMPDCAELANLINQCWTYDPTKRPSFRAILR  256 (259)
T ss_pred             CC----cchhhHHHHHHHHHHHHHhCCCCCcccCCchhHHHHHhcCCCCCCCCchHHHHHHHHHhccChhhCCCHHHHHH
Confidence            11    4578999999999999999 577775532111110 01111222233478999999999999999999999887


Q ss_pred             HH
Q psy4039         505 VC  506 (588)
Q Consensus       505 ~L  506 (588)
                      .|
T Consensus       257 ~l  258 (259)
T cd05037         257 DL  258 (259)
T ss_pred             hc
Confidence            43

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>KOG1035|consensus

Probab=100.00  E-value=3.2e-36  Score=337.89  Aligned_cols=282  Identities=26%  Similarity=0.334  Sum_probs=196.9

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      .+|+..++||+||||.||+++.+  |+.||||+|.... .  .             ..-..+.+|+.++.+|    +|||
T Consensus       479 ~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~-s--~-------------~~~skI~rEVk~LArL----nHpN  538 (1351)
T KOG1035|consen  479 NDFEELELLGKGGFGSVVKVRNKLDGREYAIKKIPLKA-S--D-------------KLYSKILREVKLLARL----NHPN  538 (1351)
T ss_pred             hhhHHHHHhcCCCCceEEEEeecccchhhhhhhccCch-H--H-------------HHHHHHHHHHHHHhhc----CCcc
Confidence            57888999999999999999998  9999999995422 0  0             0123356799999998    9999


Q ss_pred             eEEEeeeeeccCCCCCC-------------C-------CCcCCCCC-------------CCccCCC--------------
Q psy4039         274 VVVMHFAFTDFVPSIPD-------------S-------SLIYPSAL-------------PARLNPT--------------  306 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~-------------~-------~~l~~~~~-------------~~~~~~~--------------  306 (588)
                      ||++|..+.+.......             +       ...+-.+.             +...+..              
T Consensus       539 VVRYysAWVEs~~~~~~~ei~~~~~~~~sQs~s~~~~~~~~~q~t~~p~~~~~~~~~~~~dd~sss~~~~~~~~~~~~d~  618 (1351)
T KOG1035|consen  539 VVRYYSAWVESTAELTVLEIVASDSESRSQSASKYNGVDIRYQPTSSPSLTLSELDSEDEDDKSSSYTTRKASYESSTDE  618 (1351)
T ss_pred             eeeeehhhhccCCccccccccccchhhhcccCCCcccceeeeccCCCcccCcchhhccccCccccccccccccccccCCc
Confidence            99998877653321100             0       00000000             0000000              


Q ss_pred             --------C----------------------------CCC--------CCceEEEEEecCC-CcHHHHHHHhcCCC--CH
Q psy4039         307 --------G----------------------------GYG--------RNMSLFILMKKYN-TDLRNYLRERCAQL--SM  339 (588)
Q Consensus       307 --------g----------------------------g~~--------~~~~l~lvme~~~-gsL~~~L~~~~~~l--~~  339 (588)
                              |                            +..        ....+||-||||. .+|.++++.+  .+  ..
T Consensus       619 e~~d~dedg~~~S~tS~~e~~~~~d~~~ess~s~~~~~n~~e~~~~~q~~~~LYIQMEyCE~~ll~~iI~~N--~~~~~~  696 (1351)
T KOG1035|consen  619 ENDDSDEDGRNLSNTSDSEGSVILDDTSESSESIPKTENSSEPMVPVQKPLILYIQMEYCEKTLLRDIIRRN--HFNSQR  696 (1351)
T ss_pred             ccccccccccccccccccCCccccCcchhhhhhccccCCccccccccccceEEEEEHhhhhhhHHHHHHHhc--ccchhh
Confidence                    0                            000        1157899999996 5666666655  34  47


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccC----C--------CC-ccccccc
Q psy4039         340 HERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNK----S--------GL-SMQYSSA  406 (588)
Q Consensus       340 ~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~----~--------~~-~~~~~~~  406 (588)
                      ...+.++++|++||.|+|++|||||||||.||++|++     ..|||+|||+|....    .        +. .......
T Consensus       697 d~~wrLFreIlEGLaYIH~~giIHRDLKP~NIFLd~~-----~~VKIGDFGLAt~~~~~~~~~d~~~~~~~~~~g~~~~~  771 (1351)
T KOG1035|consen  697 DEAWRLFREILEGLAYIHDQGIIHRDLKPRNIFLDSR-----NSVKIGDFGLATDLKENLESIDQDLSFSTNRAGSNDGD  771 (1351)
T ss_pred             HHHHHHHHHHHHHHHHHHhCceeeccCCcceeEEcCC-----CCeeecccccchhhhhhhhhHhhccCccccccCCCCcc
Confidence            7899999999999999999999999999999999987     799999999998721    0        00 0111223


Q ss_pred             cccccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccc----cccccCC---CCCCccH
Q psy4039         407 DIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY----EVNALPQ---LNTNVPE  479 (588)
Q Consensus       407 ~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~----~~~~~~~---~~~~~~~  479 (588)
                      .+..+||.-|+|||++.+...   ..|+.|+|+||+|||++||+.   ||...+.....    .....|.   ++..--+
T Consensus       772 ~Ts~VGTalYvAPEll~~~~~---~~Yn~KiDmYSLGIVlFEM~y---PF~TsMERa~iL~~LR~g~iP~~~~f~~~~~~  845 (1351)
T KOG1035|consen  772 LTSQVGTALYVAPELLSDTSS---NKYNSKIDMYSLGIVLFEMLY---PFGTSMERASILTNLRKGSIPEPADFFDPEHP  845 (1351)
T ss_pred             cccccceeeeecHHHhccccc---ccccchhhhHHHHHHHHHHhc---cCCchHHHHHHHHhcccCCCCCCcccccccch
Confidence            456889999999999976653   347789999999999999985   67664333221    1111111   1222224


Q ss_pred             HHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccC
Q psy4039         480 VMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       480 ~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~  519 (588)
                      .-..+|+.||+.||.+||||.|+|+         +.|+..
T Consensus       846 ~e~slI~~Ll~hdP~kRPtA~eLL~---------s~llpp  876 (1351)
T KOG1035|consen  846 EEASLIRWLLSHDPSKRPTATELLN---------SELLPP  876 (1351)
T ss_pred             HHHHHHHHHhcCCCccCCCHHHHhh---------ccCCCc
Confidence            4678999999999999999999999         888864

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=100.00  E-value=4.9e-36  Score=313.48  Aligned_cols=252  Identities=18%  Similarity=0.185  Sum_probs=186.2

Q ss_pred             eeeccc--CceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEE
Q psy4039         202 KFIAKG--TNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVM  277 (588)
Q Consensus       202 ~~IG~G--~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l  277 (588)
                      ..||+|  +||+||++.+.  ++.||||++.......   .            ..+.+.+|+.+++.+    +||||+++
T Consensus         4 ~~ig~g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~~---~------------~~~~~~~e~~~~~~l----~h~niv~~   64 (328)
T cd08226           4 VEIGRGFCNLTSVYLARHTPTGTLVTVRITDLENCTE---E------------HLKALQNEVVLSHFF----RHPNIMTS   64 (328)
T ss_pred             HHhCCcccCceeEEEEEEcCCCcEEEEEEeccccCCH---H------------HHHHHHHHHHHHHhC----CCCCcceE
Confidence            456766  99999999985  8999999985321110   0            123455677777766    89999999


Q ss_pred             eeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHH
Q psy4039         278 HFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER-CAQLSMHERVLLFTQLLEGVTH  355 (588)
Q Consensus       278 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~-~~~l~~~~~~~i~~ql~~gL~y  355 (588)
                      +++|....                            ..+++|||+ .++|.+++... ...+++..+..++.|++.||+|
T Consensus        65 ~~~~~~~~----------------------------~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~  116 (328)
T cd08226          65 WTVFTTGS----------------------------WLWVISPFMAYGSANSLLKTYFPEGMSEALIGNILFGALRGLNY  116 (328)
T ss_pred             eeeEecCC----------------------------ceEEEEecccCCCHHHHHHhhcccCCCHHHHHHHHHHHHHHHHH
Confidence            99998632                            489999999 57999998864 2368999999999999999999


Q ss_pred             HHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCC-Cccccc-cccccccCCccccchhHHhcCCCCccCCC
Q psy4039         356 LNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSG-LSMQYS-SADIELGGNVALMAPEVALATPGLFSFVN  433 (588)
Q Consensus       356 LH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~-~~~~~~-~~~~~~~GT~~Y~APE~l~~~~~~~~~~~  433 (588)
                      ||++||+||||||+|||++.+     +.++++|||.+...... ...... .......++..|+|||++.+....    +
T Consensus       117 lH~~~ivHrDlkp~Nill~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~----~  187 (328)
T cd08226         117 LHQNGYIHRNIKASHILISGD-----GLVSLSGLSHLYSLVRNGQKAKVVYDFPQFSTSVLPWLSPELLRQDLYG----Y  187 (328)
T ss_pred             HHhCCeecCCCCHHHEEEeCC-----CcEEEechHHHhhhhccCccccccccccccccCccCccChhhhcCCCCC----C
Confidence            999999999999999999987     78999999865432221 110000 000112356789999999764322    3


Q ss_pred             CCcCchhhHHHHHHHHhcCCCCCcccccccccc-----------------------------------------------
Q psy4039         434 YSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE-----------------------------------------------  466 (588)
Q Consensus       434 ~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~-----------------------------------------------  466 (588)
                      +.++|||||||++|||++|..||..........                                               
T Consensus       188 ~~~~DiwslG~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (328)
T cd08226         188 NVKSDIYSVGITACELATGRVPFQDMLRTQMLLQKLKGPPYSPLDITTFPCEESRMKNSQSGVDSGIGESVVAAGMTQTM  267 (328)
T ss_pred             CchhhHHHHHHHHHHHHhCCCCCCCcChHHHHHHHhcCCCCCCccccccchhhhhhccchhhhhcccccchhcccccccc
Confidence            478999999999999999999996531110000                                               


Q ss_pred             --ccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCcccc
Q psy4039         467 --VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLY  518 (588)
Q Consensus       467 --~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~  518 (588)
                        .....+.+..+++.+.+|+++||+.||++|||++++++         |||+.
T Consensus       268 ~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpta~e~l~---------~~~~~  312 (328)
T cd08226         268 TSERLRTPSSKTFSPAFQNLVELCLQQDPEKRPSASSLLS---------HAFFK  312 (328)
T ss_pred             ccccccchhhhhhhHHHHHHHHHHccCCcccCCCHHHHhh---------CHHHH
Confidence              00001112346778999999999999999999999999         99986

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=100.00  E-value=1.8e-35  Score=299.85  Aligned_cols=248  Identities=17%  Similarity=0.219  Sum_probs=180.2

Q ss_pred             eeecccCceeEEEEEEC-C---eeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEE
Q psy4039         202 KFIAKGTNAVVYEATFR-G---VEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVM  277 (588)
Q Consensus       202 ~~IG~G~fG~Vy~a~~~-g---~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l  277 (588)
                      +.||+|+||.||+|... +   ..+++|.+......                .....+.+|+.+++.+    +||||+++
T Consensus         1 ~~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~----------------~~~~~~~~e~~~~~~l----~h~~iv~~   60 (268)
T cd05086           1 QEIGNGWFGKVLLSEIYTDTGVARVVVKELKANASS----------------KEQNEFLQQGDPYRIL----QHPNILQC   60 (268)
T ss_pred             CcCCCCcCceEEEEEEEcCCCcceEEEEEecCCCCh----------------HHHHHHHHHHHHHhcc----CCcchhhe
Confidence            36999999999999754 2   34566665321100                0123566677888776    99999999


Q ss_pred             eeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc---CCCCHHHHHHHHHHHHHHH
Q psy4039         278 HFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC---AQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       278 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~---~~l~~~~~~~i~~ql~~gL  353 (588)
                      ++.|.+..                            ..++||||+ +|+|.+++....   ..+++..+..++.||++||
T Consensus        61 ~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al  112 (268)
T cd05086          61 LGQCVEAI----------------------------PYLLVFEYCELGDLKSYLSQEQWHRRNSQLLLLQRMACEIAAGV  112 (268)
T ss_pred             EEEecCCC----------------------------ccEEEEecCCCCcHHHHHHhhhcccccccHHHHHHHHHHHHHHH
Confidence            99987632                            389999999 589999998642   2467778889999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCC-CccCC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG-LFSFV  432 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~-~~~~~  432 (588)
                      .|||+++|+||||||+|||++.+     +.++|+|||++.........   .......|++.|+|||++....+ .....
T Consensus       113 ~~lH~~~i~H~dikp~nil~~~~-----~~~~l~Dfg~~~~~~~~~~~---~~~~~~~~~~~y~aPE~~~~~~~~~~~~~  184 (268)
T cd05086         113 THMHKHNFLHSDLALRNCFLTSD-----LTVKVGDYGIGPSRYKEDYI---ETEDDKCVPLRWLAPELVGEFHGGLITAE  184 (268)
T ss_pred             HHHHHCCeeccCCccceEEEcCC-----ccEEecccccccccCcchhh---hcccCCcCcccccCchhcccccCccccCC
Confidence            99999999999999999999887     78999999998643221111   11124568899999999854321 11222


Q ss_pred             CCCcCchhhHHHHHHHHhc-CCCCCccccccccc--------cccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHH
Q psy4039         433 NYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTDY--------EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAA  503 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~~--------~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l  503 (588)
                      .+.++|||||||++|||++ |..||........+        .....+.+...+++.+.+++..|| .+|++||++++++
T Consensus       185 ~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~-~~P~~Rp~~~~i~  263 (268)
T cd05086         185 QTKPSNVWALGVTLWELFENAAQPYSHLSDREVLNHVIKDQQVKLFKPQLELPYSERWYEVLQFCW-LSPEKRATAEEVH  263 (268)
T ss_pred             CCCcchhHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHhhcccccCCCccCCCCcHHHHHHHHHHh-hCcccCCCHHHHH
Confidence            4578999999999999996 56787542211111        111223445567889999999999 6899999999998


Q ss_pred             HHH
Q psy4039         504 TVC  506 (588)
Q Consensus       504 ~~L  506 (588)
                      ..|
T Consensus       264 ~~l  266 (268)
T cd05086         264 RLL  266 (268)
T ss_pred             HHh
Confidence            755

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=100.00  E-value=1.1e-35  Score=297.49  Aligned_cols=244  Identities=27%  Similarity=0.360  Sum_probs=192.1

Q ss_pred             eEEeeeecccCceeEEEEEECC------eeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCC
Q psy4039         198 IQIGKFIAKGTNAVVYEATFRG------VEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPH  271 (588)
Q Consensus       198 ~~~~~~IG~G~fG~Vy~a~~~g------~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~H  271 (588)
                      +++.+.||.|+||.||+|.+..      ..||+|++.......                ....+..|+.+++.+    +|
T Consensus         1 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~----------------~~~~~~~e~~~l~~l----~~   60 (258)
T smart00219        1 LTLGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQ----------------QIEEFLREARIMRKL----DH   60 (258)
T ss_pred             CcccceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCChH----------------HHHHHHHHHHHHHhc----CC
Confidence            3567889999999999999974      789999985321110                123456688888887    99


Q ss_pred             CceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCC-CCHHHHHHHHHHH
Q psy4039         272 PNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQ-LSMHERVLLFTQL  349 (588)
Q Consensus       272 pNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~-l~~~~~~~i~~ql  349 (588)
                      |||+++++++.+..                            ..+++||++ +++|.+++...... +++.++..++.|+
T Consensus        61 ~~i~~~~~~~~~~~----------------------------~~~~i~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ql  112 (258)
T smart00219       61 PNIVKLLGVCTEEE----------------------------PLMIVMEYMEGGDLLDYLRKNRPKELSLSDLLSFALQI  112 (258)
T ss_pred             CchheEEEEEcCCC----------------------------eeEEEEeccCCCCHHHHHHhhhhccCCHHHHHHHHHHH
Confidence            99999999887632                            489999999 57999999875433 9999999999999


Q ss_pred             HHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCc
Q psy4039         350 LEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF  429 (588)
Q Consensus       350 ~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~  429 (588)
                      +.||+|||+.+++||||||+||+++++     +.++|+|||+++...........    ...+++.|+|||.+.+..   
T Consensus       113 ~~~l~~lh~~~~~h~dl~~~nil~~~~-----~~~~l~dfg~~~~~~~~~~~~~~----~~~~~~~y~~Pe~~~~~~---  180 (258)
T smart00219      113 ARGMEYLESKNFIHRDLAARNCLVGEN-----LVVKISDFGLSRDLYDDDYYKKK----GGKLPIRWMAPESLKDGK---  180 (258)
T ss_pred             HHHHHHHhcCCeeecccccceEEEccC-----CeEEEcccCCceecccccccccc----cCCCcccccChHHhccCC---
Confidence            999999999999999999999999987     78999999999876543211110    123788999999985443   


Q ss_pred             cCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHH
Q psy4039         430 SFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAAT  504 (588)
Q Consensus       430 ~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~  504 (588)
                         .+.++||||+|+++|||++ |..||........   ......+..+..+|.++.+++.+||..||++|||+.++++
T Consensus       181 ---~~~~~Di~slG~i~~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~ll~  256 (258)
T smart00219      181 ---FTSKSDVWSFGVLLWEIFTLGESPYPGMSNEEVLEYLKKGYRLPKPENCPPEIYKLMLQCWAEDPEDRPTFSELVE  256 (258)
T ss_pred             ---CCcchhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHCcCChhhCcCHHHHHh
Confidence               4578999999999999998 7888865322111   1122233445668999999999999999999999999876

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=100.00  E-value=1.4e-35  Score=301.30  Aligned_cols=249  Identities=25%  Similarity=0.323  Sum_probs=194.4

Q ss_pred             eEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceE
Q psy4039         198 IQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVV  275 (588)
Q Consensus       198 ~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV  275 (588)
                      |+..+.||+|+||.||+|+..  ++.||+|++......               ......+..|+.+++.+    +||||+
T Consensus         1 y~~~~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~---------------~~~~~~~~~e~~~l~~~----~~~~i~   61 (282)
T cd07829           1 YEKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEE---------------EGIPSTALREISLLKEL----KHPNIV   61 (282)
T ss_pred             CeeehcccccCcceEEEeeecCCCcEEEEEEecccccc---------------ccccHHHHHHHHHHHhc----CCCCHH
Confidence            567788999999999999997  789999998542200               01123345688888887    899999


Q ss_pred             EEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q psy4039         276 VMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTH  355 (588)
Q Consensus       276 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~y  355 (588)
                      ++++++.+.                            ...++|||+++++|.+++......+++..+..++.|++.||.|
T Consensus        62 ~~~~~~~~~----------------------------~~~~~v~e~~~~~l~~~i~~~~~~~~~~~~~~~~~~i~~~l~~  113 (282)
T cd07829          62 KLLDVIHTE----------------------------RKLYLVFEYCDMDLKKYLDKRPGPLSPNLIKSIMYQLLRGLAY  113 (282)
T ss_pred             HHHhhhhcC----------------------------CceEEEecCcCcCHHHHHHhhccCCCHHHHHHHHHHHHHHHHH
Confidence            999988763                            2489999999889999998764579999999999999999999


Q ss_pred             HHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCC
Q psy4039         356 LNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS  435 (588)
Q Consensus       356 LH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~  435 (588)
                      ||++||+||||+|+||+++++     +.++|+|||+++....... ..    ....++..|+|||++.+...     .+.
T Consensus       114 LH~~~i~H~~l~~~ni~~~~~-----~~~~l~d~g~~~~~~~~~~-~~----~~~~~~~~~~aPE~~~~~~~-----~~~  178 (282)
T cd07829         114 CHSHRILHRDLKPQNILINRD-----GVLKLADFGLARAFGIPLR-TY----THEVVTLWYRAPEILLGSKH-----YST  178 (282)
T ss_pred             HHHCCcccCCCChheEEEcCC-----CCEEEecCCcccccCCCcc-cc----CccccCcCcCChHHhcCCcC-----CCc
Confidence            999999999999999999987     8999999999977544221 11    12346778999999865421     456


Q ss_pred             cCchhhHHHHHHHHhcCCCCCccccccccc-----------------------cccccC--------CCCCCccHHHHHH
Q psy4039         436 KSDAWTAGTVAYEIFGHDNPFYQSARNTDY-----------------------EVNALP--------QLNTNVPEVMRRL  484 (588)
Q Consensus       436 ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~-----------------------~~~~~~--------~~~~~~~~~l~~L  484 (588)
                      ++|||||||++|||++|.+||.........                       .....+        .....++.++.++
T Consensus       179 ~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (282)
T cd07829         179 AVDIWSVGCIFAEMITGKPLFPGDSEIDQLFKIFQILGTPTEESWPGVTKLPDYKPTFPKFPPKDLEKVLPRLDPEGIDL  258 (282)
T ss_pred             cccHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCCcHHHHHhhcccccccccccccCccchHHhcccccHHHHHH
Confidence            899999999999999999999653211000                       000000        1112347889999


Q ss_pred             HHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccc
Q psy4039         485 VAKLLENDPSDRPSAELAATVCQLYLWAPKHWL  517 (588)
Q Consensus       485 i~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~  517 (588)
                      +.+||..||++||++++++.         |||+
T Consensus       259 i~~~l~~~P~~Rp~~~~~l~---------~p~~  282 (282)
T cd07829         259 LSKMLQYNPAKRISAKEALK---------HPYF  282 (282)
T ss_pred             HHHhhccCcccCCCHHHHhh---------CcCC
Confidence            99999999999999999999         9996

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=100.00  E-value=6.6e-36  Score=300.10  Aligned_cols=249  Identities=26%  Similarity=0.375  Sum_probs=191.5

Q ss_pred             ecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEEeeee
Q psy4039         204 IAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAF  281 (588)
Q Consensus       204 IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l~~~~  281 (588)
                      ||.|+||.||++.+.  ++.||+|.+.......              ......+.+|+.+++.+    +||||+++++.+
T Consensus         1 lg~g~~~~vy~~~~~~~~~~~~~k~~~~~~~~~--------------~~~~~~~~~e~~~l~~~----~h~~i~~~~~~~   62 (265)
T cd05579           1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIR--------------KNQVDQVLTERDILSQA----QSPYVVKLYYSF   62 (265)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEecchhhhh--------------hhHHHHHHHHHHHHHhC----CCcchhHHHHhe
Confidence            689999999999997  8899999985322110              01223456688888887    899999999887


Q ss_pred             eccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC
Q psy4039         282 TDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHR  360 (588)
Q Consensus       282 ~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yLH~~~  360 (588)
                      .+.                            ...|++|||+ +++|.+++...+ .+++..+..++.||++||.|||+++
T Consensus        63 ~~~----------------------------~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~L~~lH~~~  113 (265)
T cd05579          63 QGK----------------------------KNLYLVMEYLPGGDLASLLENVG-SLDEDVARIYIAEIVLALEYLHSNG  113 (265)
T ss_pred             ecC----------------------------cEEEEEEecCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHcC
Confidence            652                            2489999999 579999998765 7999999999999999999999999


Q ss_pred             ceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCcc---ccccccccccCCccccchhHHhcCCCCccCCCCCcC
Q psy4039         361 TAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSM---QYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS  437 (588)
Q Consensus       361 IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~---~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ks  437 (588)
                      |+||||+|+||+++.+     +.++|+|||++.........   ..........++..|+|||......      .+.++
T Consensus       114 i~H~di~~~nil~~~~-----~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~------~~~~~  182 (265)
T cd05579         114 IIHRDLKPDNILIDSN-----GHLKLTDFGLSKVGLVRRQINLNDDEKEDKRIVGTPDYIAPEVILGQG------HSKTV  182 (265)
T ss_pred             eecCCCCHHHeEEcCC-----CCEEEEecccchhcccCcccccccccccccCcccCccccCHHHhcCCC------CCcch
Confidence            9999999999999987     78999999998764332110   0011112456888999999987654      34679


Q ss_pred             chhhHHHHHHHHhcCCCCCccccccccccc--cccCCCCCC--ccHHHHHHHHHhhhhCCCCCCCH---HHHHHHHhhhh
Q psy4039         438 DAWTAGTVAYEIFGHDNPFYQSARNTDYEV--NALPQLNTN--VPEVMRRLVAKLLENDPSDRPSA---ELAATVCQLYL  510 (588)
Q Consensus       438 DVwS~Gvil~ElltG~~Pf~~~~~~~~~~~--~~~~~~~~~--~~~~l~~Li~~~L~~dP~~Rps~---~e~l~~L~~~~  510 (588)
                      ||||||+++||+++|..||...........  ......+..  ++..+.+++.+||+.+|.+|||+   .++++      
T Consensus       183 Dv~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~~~~~l~------  256 (265)
T cd05579         183 DWWSLGCILYEFLVGIPPFHGETPEEIFQNILNGKIEWPEDVEVSDEAIDLISKLLVPDPEKRLGAKSIEEIKN------  256 (265)
T ss_pred             hhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhcCCcCCCccccCCHHHHHHHHHHhcCCHhhcCCCccHHHHhc------
Confidence            999999999999999999975432211111  011122233  48999999999999999999999   66666      


Q ss_pred             hcCCccccC
Q psy4039         511 WAPKHWLYG  519 (588)
Q Consensus       511 ~~~h~w~~~  519 (588)
                         |||++.
T Consensus       257 ---~~~~~~  262 (265)
T cd05579         257 ---HPFFKG  262 (265)
T ss_pred             ---CccccC
Confidence               999963

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=100.00  E-value=6.6e-36  Score=300.91  Aligned_cols=251  Identities=26%  Similarity=0.340  Sum_probs=193.4

Q ss_pred             CeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCce
Q psy4039         197 DIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNV  274 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNI  274 (588)
                      +|.+.+.||+|+||.||++.+.  +..+++|+++.......            .......+.+|+.+++.+    +||||
T Consensus         1 ~y~i~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~e~~~l~~l----~h~~i   64 (260)
T cd08222           1 RYILQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGEL------------NPNETVQANQEAQLLSKL----DHPAI   64 (260)
T ss_pred             CceeeeeecCCCCceEEEEEecCCCCcceEEEecccccccc------------CcchHHHHHHHHHHHHhC----CCCcH
Confidence            4788999999999999999887  45577777643221110            001112344577888876    89999


Q ss_pred             EEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHH---hcCCCCHHHHHHHHHHHH
Q psy4039         275 VVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRE---RCAQLSMHERVLLFTQLL  350 (588)
Q Consensus       275 V~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~---~~~~l~~~~~~~i~~ql~  350 (588)
                      +++++++.+..                            ..+++|||+ +++|.+++..   ....+++.++..++.|++
T Consensus        65 ~~~~~~~~~~~----------------------------~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~  116 (260)
T cd08222          65 VKFHASFLERD----------------------------AFCIITEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLL  116 (260)
T ss_pred             HHHHHHHhcCC----------------------------ceEEEEEeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHH
Confidence            99998876532                            389999999 5799998874   234799999999999999


Q ss_pred             HHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCcc
Q psy4039         351 EGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFS  430 (588)
Q Consensus       351 ~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~  430 (588)
                      +||.|||+.|++|+||||+||+++.+      .++|+|||+++........     .....|++.|+|||.+.+..    
T Consensus       117 ~~l~~lH~~~i~h~~l~~~nili~~~------~~~l~d~g~~~~~~~~~~~-----~~~~~~~~~~~~pe~~~~~~----  181 (260)
T cd08222         117 LGVHYMHQRRILHRDLKAKNIFLKNN------LLKIGDFGVSRLLMGSCDL-----ATTFTGTPYYMSPEALKHQG----  181 (260)
T ss_pred             HHHHHHHHcCccccCCChhheEeecC------CEeecccCceeecCCCccc-----ccCCCCCcCccCHHHHccCC----
Confidence            99999999999999999999999743      6999999998775432211     11345889999999986543    


Q ss_pred             CCCCCcCchhhHHHHHHHHhcCCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHh
Q psy4039         431 FVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       431 ~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~  507 (588)
                        .+.++|+||||+++|+|++|..||........   ......+..+..++.++.++|.+||..||++||++.+++.   
T Consensus       182 --~~~~~Dv~slG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~---  256 (260)
T cd08222         182 --YDSKSDIWSLGCILYEMCCLAHAFEGQNFLSVVLRIVEGPTPSLPETYSRQLNSIMQSMLNKDPSLRPSAAEILR---  256 (260)
T ss_pred             --CCchhhHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHcCCCCCCcchhcHHHHHHHHHHhcCChhhCcCHHHHhh---
Confidence              34679999999999999999999965322111   1122344456678899999999999999999999999999   


Q ss_pred             hhhhcCCccc
Q psy4039         508 LYLWAPKHWL  517 (588)
Q Consensus       508 ~~~~~~h~w~  517 (588)
                            |||+
T Consensus       257 ------~~~~  260 (260)
T cd08222         257 ------NPFI  260 (260)
T ss_pred             ------CCCC
Confidence                  9996

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=100.00  E-value=1e-35  Score=306.26  Aligned_cols=249  Identities=24%  Similarity=0.344  Sum_probs=194.9

Q ss_pred             eEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceE
Q psy4039         198 IQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVV  275 (588)
Q Consensus       198 ~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV  275 (588)
                      |+....||+|+||.||++...  +..||||.+....                 ......+.+|+.+++.+    +||||+
T Consensus        22 ~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~-----------------~~~~~~~~~e~~~l~~l----~h~~iv   80 (292)
T cd06657          22 LDNFIKIGEGSTGIVCIATVKSSGKLVAVKKMDLRK-----------------QQRRELLFNEVVIMRDY----QHENVV   80 (292)
T ss_pred             hhhHHHcCCCCCeEEEEEEEcCCCeEEEEEEecccc-----------------hhHHHHHHHHHHHHHhc----CCcchh
Confidence            334468999999999999885  7899999873211                 01233466788888887    899999


Q ss_pred             EEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy4039         276 VMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVT  354 (588)
Q Consensus       276 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~  354 (588)
                      ++++++.+..                            ..+++|||+ +++|.+++...  .+++..+..++.|++.||+
T Consensus        81 ~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~ql~~~l~  130 (292)
T cd06657          81 EMYNSYLVGD----------------------------ELWVVMEFLEGGALTDIVTHT--RMNEEQIAAVCLAVLKALS  130 (292)
T ss_pred             heeeEEEeCC----------------------------EEEEEEecCCCCcHHHHHhcC--CCCHHHHHHHHHHHHHHHH
Confidence            9999987632                            489999999 57899887654  7899999999999999999


Q ss_pred             HHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCC
Q psy4039         355 HLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY  434 (588)
Q Consensus       355 yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~  434 (588)
                      |||++||+||||||+||+++.+     +.++|+|||++........     ......||+.|+|||.+.+..      .+
T Consensus       131 ~lH~~givH~dl~p~Nilv~~~-----~~~~l~dfg~~~~~~~~~~-----~~~~~~~~~~y~~pE~~~~~~------~~  194 (292)
T cd06657         131 VLHAQGVIHRDIKSDSILLTHD-----GRVKLSDFGFCAQVSKEVP-----RRKSLVGTPYWMAPELISRLP------YG  194 (292)
T ss_pred             HHHHCCeecCCCCHHHEEECCC-----CCEEEcccccceecccccc-----cccccccCccccCHHHhcCCC------CC
Confidence            9999999999999999999987     7899999999876533211     111356899999999986544      45


Q ss_pred             CcCchhhHHHHHHHHhcCCCCCccccccccc---cccccCC--CCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhh
Q psy4039         435 SKSDAWTAGTVAYEIFGHDNPFYQSARNTDY---EVNALPQ--LNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLY  509 (588)
Q Consensus       435 ~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~---~~~~~~~--~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~  509 (588)
                      .++||||+||++|||++|..||.........   .....+.  ....+++.+.+++.+||+.||.+||++.+++.     
T Consensus       195 ~~~Dv~slGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~R~~~~~ll~-----  269 (292)
T cd06657         195 PEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPKLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLK-----  269 (292)
T ss_pred             chhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhhCCcccCCcccCCHHHHHHHHHHHhCCcccCcCHHHHhc-----
Confidence            6899999999999999999999764221111   0011111  12357889999999999999999999999999     


Q ss_pred             hhcCCccccCCCC
Q psy4039         510 LWAPKHWLYGATP  522 (588)
Q Consensus       510 ~~~~h~w~~~~~~  522 (588)
                          |||+....+
T Consensus       270 ----~~~~~~~~~  278 (292)
T cd06657         270 ----HPFLAKAGP  278 (292)
T ss_pred             ----ChHHhccCC
Confidence                999985544

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=100.00  E-value=2.4e-35  Score=301.46  Aligned_cols=249  Identities=26%  Similarity=0.354  Sum_probs=200.5

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      +.|+..+.||+|+||.||+|.+.  +..||+|.+.....                  ....+.+|+.+++.+    +|+|
T Consensus        19 ~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~------------------~~~~~~~e~~~l~~l----~~~~   76 (286)
T cd06614          19 ELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQ------------------NKELIINEILIMKDC----KHPN   76 (286)
T ss_pred             ccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecCch------------------hHHHHHHHHHHHHHC----CCCC
Confidence            67899999999999999999997  88999999853211                  123456688888887    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCC-CcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYN-TDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~-gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++++....                            ..++++||++ ++|.+++......+++..+..++.|++.|
T Consensus        77 i~~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~i~~~i~~~  128 (286)
T cd06614          77 IVDYYDSYLVGD----------------------------ELWVVMEYMDGGSLTDIITQNFVRMNEPQIAYVCREVLQG  128 (286)
T ss_pred             eeEEEEEEEECC----------------------------EEEEEEeccCCCcHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence            999999987632                            4899999995 89999998865579999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||+.||+|+||||+||+++.+     +.++|+|||++........     ......|++.|+|||++.+..      
T Consensus       129 L~~lH~~gi~H~dl~p~ni~i~~~-----~~~~l~d~~~~~~~~~~~~-----~~~~~~~~~~y~~PE~~~~~~------  192 (286)
T cd06614         129 LEYLHSQNVIHRDIKSDNILLSKD-----GSVKLADFGFAAQLTKEKS-----KRNSVVGTPYWMAPEVIKRKD------  192 (286)
T ss_pred             HHHHHhCCeeeCCCChhhEEEcCC-----CCEEECccchhhhhccchh-----hhccccCCcccCCHhHhcCCC------
Confidence            999999999999999999999987     7899999999865433211     111345788999999987654      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCccccccccc---cccccCC--CCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHh
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY---EVNALPQ--LNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~---~~~~~~~--~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~  507 (588)
                      .+.++|||||||++|+|++|..||.........   .....+.  .+..++.+++++|.+||+.+|.+||++.+++.   
T Consensus       193 ~~~~~Dv~slGvil~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~---  269 (286)
T cd06614         193 YGPKVDIWSLGIMCIEMAEGEPPYLREPPLRALFLITTKGIPPLKNPEKWSPEFKDFLNKCLVKDPEKRPSAEELLQ---  269 (286)
T ss_pred             CCCccccHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCcchhhCCHHHHHHHHHHhccChhhCcCHHHHhh---
Confidence            457899999999999999999998763221111   0111111  12347899999999999999999999999999   


Q ss_pred             hhhhcCCccccC
Q psy4039         508 LYLWAPKHWLYG  519 (588)
Q Consensus       508 ~~~~~~h~w~~~  519 (588)
                            |+|+..
T Consensus       270 ------~~~~~~  275 (286)
T cd06614         270 ------HPFLKK  275 (286)
T ss_pred             ------ChHhhc
Confidence                  999985

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>KOG4278|consensus

Probab=100.00  E-value=2.3e-36  Score=317.34  Aligned_cols=258  Identities=22%  Similarity=0.276  Sum_probs=212.6

Q ss_pred             CCccccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhh
Q psy4039         188 PDVDDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSV  265 (588)
Q Consensus       188 ~~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l  265 (588)
                      .+.|+..-.+.....+||-|.||.||.|.|+  ...||||.++..                  .+..+.|..|..+|+.+
T Consensus       259 ~DkWEmeRtdItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLKED------------------tMeveEFLkEAAvMKei  320 (1157)
T KOG4278|consen  259 ADKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED------------------TMEVEEFLKEAAVMKEI  320 (1157)
T ss_pred             cchhhccchheeeeeccCCCcccceeeeeeeccceeeehhhhhhc------------------chhHHHHHHHHHHHHhh
Confidence            3677887788888999999999999999998  568999998421                  12345678899999998


Q ss_pred             cCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc-CCCCHHHHH
Q psy4039         266 ENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC-AQLSMHERV  343 (588)
Q Consensus       266 ~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~-~~l~~~~~~  343 (588)
                          +|||+|+|+|+|+...|                            +|||+||| .|+|.+||+++. ..++.-..+
T Consensus       321 ----kHpNLVqLLGVCT~EpP----------------------------FYIiTEfM~yGNLLdYLRecnr~ev~avvLl  368 (1157)
T KOG4278|consen  321 ----KHPNLVQLLGVCTHEPP----------------------------FYIITEFMCYGNLLDYLRECNRSEVPAVVLL  368 (1157)
T ss_pred             ----cCccHHHHhhhhccCCC----------------------------eEEEEecccCccHHHHHHHhchhhcchhHHH
Confidence                99999999999998653                            99999999 799999999874 356777788


Q ss_pred             HHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHh
Q psy4039         344 LLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVAL  423 (588)
Q Consensus       344 ~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~  423 (588)
                      .++.||..|++||..+++|||||-..|.|+.++     ..+|++|||+++....+..   +.+. ...-.+.|.|||-+.
T Consensus       369 yMAtQIsSaMeYLEkknFIHRDLAARNCLVgEn-----hiVKvADFGLsRlMtgDTY---TAHA-GAKFPIKWTAPEsLA  439 (1157)
T KOG4278|consen  369 YMATQISSAMEYLEKKNFIHRDLAARNCLVGEN-----HIVKVADFGLSRLMTGDTY---TAHA-GAKFPIKWTAPESLA  439 (1157)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhhhcccccc-----ceEEeeccchhhhhcCCce---eccc-CccCcccccCccccc
Confidence            889999999999999999999999999999988     7999999999998655322   2211 122356899999987


Q ss_pred             cCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCccccccccc---cccccCCCCCCccHHHHHHHHHhhhhCCCCCCCH
Q psy4039         424 ATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTDY---EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSA  499 (588)
Q Consensus       424 ~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~~---~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~  499 (588)
                      ...      .+.|+|||+|||+|||+.| |-.||.+-.....|   +...+..-|..||+.+.+||+.||+++|.+||++
T Consensus       440 yNt------FSiKSDVWAFGVLLWEIATYGMsPYPGidlSqVY~LLEkgyRM~~PeGCPpkVYeLMraCW~WsPsDRPsF  513 (1157)
T KOG4278|consen  440 YNT------FSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYGLLEKGYRMDGPEGCPPKVYELMRACWNWSPSDRPSF  513 (1157)
T ss_pred             ccc------cccchhhHHHHHHHHHHHhcCCCCCCCccHHHHHHHHhccccccCCCCCCHHHHHHHHHHhcCCcccCccH
Confidence            654      4578999999999999997 78898874333333   3344556678999999999999999999999999


Q ss_pred             HHHHHHHhhhh
Q psy4039         500 ELAATVCQLYL  510 (588)
Q Consensus       500 ~e~l~~L~~~~  510 (588)
                      .++-+.++.++
T Consensus       514 aeiHqafEtmf  524 (1157)
T KOG4278|consen  514 AEIHQAFETMF  524 (1157)
T ss_pred             HHHHHHHHHHh
Confidence            99988777665

>KOG1094|consensus

Probab=100.00  E-value=4.7e-36  Score=314.22  Aligned_cols=255  Identities=22%  Similarity=0.264  Sum_probs=206.0

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEECC-eeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCC
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATFRG-VEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLP  269 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~~g-~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~  269 (588)
                      .++.-+.+.+.++||+|-||.|..|...+ ..||||+++.....+                .+.+|.+||++|.+|    
T Consensus       533 ~EfPRs~L~~~ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~~~----------------~r~~F~kEIkiLsqL----  592 (807)
T KOG1094|consen  533 VEFPRSRLRFKEKIGEGQFGEVHLCEVEGPLKVAVKILRPDATKN----------------ARNDFLKEIKILSRL----  592 (807)
T ss_pred             hhcchhheehhhhhcCcccceeEEEEecCceEEEEeecCcccchh----------------HHHHHHHHHHHHhcc----
Confidence            45666778899999999999999999986 899999996533211                245678899999998    


Q ss_pred             CCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcC-CCCHHHHHHHHH
Q psy4039         270 PHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCA-QLSMHERVLLFT  347 (588)
Q Consensus       270 ~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~-~l~~~~~~~i~~  347 (588)
                      +|||||.|+|+|..++|                            +++++||+ +|+|.+|+..+.. .+.......|+.
T Consensus       593 khPNIveLvGVC~~DeP----------------------------icmI~EYmEnGDLnqFl~aheapt~~t~~~vsi~t  644 (807)
T KOG1094|consen  593 KHPNIVELLGVCVQDDP----------------------------LCMITEYMENGDLNQFLSAHELPTAETAPGVSICT  644 (807)
T ss_pred             CCCCeeEEEeeeecCCc----------------------------hHHHHHHHhcCcHHHHHHhccCcccccchhHHHHH
Confidence            99999999999998664                            89999999 7999999998732 246667788999


Q ss_pred             HHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCC
Q psy4039         348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG  427 (588)
Q Consensus       348 ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~  427 (588)
                      ||+.|++||.+.++|||||.+.|+|+|.+     +++||+|||++|.+-.+....   .....+-.+.|||||.+.-+. 
T Consensus       645 qiasgmaYLes~nfVHrd~a~rNcLv~~e-----~~iKiadfgmsR~lysg~yy~---vqgr~vlpiRwmawEsillgk-  715 (807)
T KOG1094|consen  645 QIASGMAYLESLNFVHRDLATRNCLVDGE-----FTIKIADFGMSRNLYSGDYYR---VQGRAVLPIRWMAWESILLGK-  715 (807)
T ss_pred             HHHHHHHHHHhhchhhccccccceeecCc-----ccEEecCcccccccccCCcee---eecceeeeeeehhHHHHHhcc-
Confidence            99999999999999999999999999988     899999999999755443221   112345578999999987655 


Q ss_pred             CccCCCCCcCchhhHHHHHHHHh--cCCCCCccccccccc----------cccccCCCCCCccHHHHHHHHHhhhhCCCC
Q psy4039         428 LFSFVNYSKSDAWTAGTVAYEIF--GHDNPFYQSARNTDY----------EVNALPQLNTNVPEVMRRLVAKLLENDPSD  495 (588)
Q Consensus       428 ~~~~~~~~ksDVwS~Gvil~Ell--tG~~Pf~~~~~~~~~----------~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~  495 (588)
                           .++++|||+|||++||++  |...||.........          .....+..|.-||..+.+||.+||..|..+
T Consensus       716 -----FttaSDvWafgvTlwE~~~~C~e~Py~~lt~e~vven~~~~~~~~~~~~~l~~P~~cp~~lyelml~Cw~~es~~  790 (807)
T KOG1094|consen  716 -----FTTASDVWAFGVTLWEVFMLCREQPYSQLTDEQVVENAGEFFRDQGRQVVLSRPPACPQGLYELMLRCWRRESEQ  790 (807)
T ss_pred             -----ccchhhhhhhHHHHHHHHHHHhhCchhhhhHHHHHHhhhhhcCCCCcceeccCCCcCcHHHHHHHHHHhchhhhc
Confidence                 568999999999999986  578998763221111          112233456789999999999999999999


Q ss_pred             CCCHHHHHHHHh
Q psy4039         496 RPSAELAATVCQ  507 (588)
Q Consensus       496 Rps~~e~l~~L~  507 (588)
                      ||+++++...|+
T Consensus       791 RPsFe~lh~~lq  802 (807)
T KOG1094|consen  791 RPSFEQLHLFLQ  802 (807)
T ss_pred             CCCHHHHHHHHH
Confidence            999999977665

>KOG2052|consensus

Probab=100.00  E-value=7.1e-36  Score=305.52  Aligned_cols=258  Identities=24%  Similarity=0.342  Sum_probs=194.9

Q ss_pred             CCeEEeeeecccCceeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceE
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVV  275 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV  275 (588)
                      .+..+.+.||+|.||.||+|.|+|..||||++...                    .++.+-+|.+|.+.+  +++|+||+
T Consensus       211 rqI~L~e~IGkGRyGEVwrG~wrGe~VAVKiF~sr--------------------dE~SWfrEtEIYqTv--mLRHENIL  268 (513)
T KOG2052|consen  211 RQIVLQEIIGKGRFGEVWRGRWRGEDVAVKIFSSR--------------------DERSWFRETEIYQTV--MLRHENIL  268 (513)
T ss_pred             heeEEEEEecCccccceeeccccCCceEEEEeccc--------------------chhhhhhHHHHHHHH--Hhccchhh
Confidence            67899999999999999999999999999999431                    223345677777654  36999999


Q ss_pred             EEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy4039         276 VMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVT  354 (588)
Q Consensus       276 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~  354 (588)
                      .+++.-..                        +.+.-..+|+|.+|. +|||.+||...  .++.+..++++..++.||+
T Consensus       269 gFIaaD~~------------------------~~gs~TQLwLvTdYHe~GSL~DyL~r~--tv~~~~ml~LalS~AsGLa  322 (513)
T KOG2052|consen  269 GFIAADNK------------------------DNGSWTQLWLVTDYHEHGSLYDYLNRN--TVTTEGMLKLALSIASGLA  322 (513)
T ss_pred             hhhhcccc------------------------CCCceEEEEEeeecccCCcHHHHHhhc--cCCHHHHHHHHHHHhhhHH
Confidence            98876433                        223344699999999 69999999986  8999999999999999999


Q ss_pred             HHHhC--------CceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCC
Q psy4039         355 HLNMH--------RTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP  426 (588)
Q Consensus       355 yLH~~--------~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~  426 (588)
                      |||-.        .|.|||||+.|||+..+     +.+.|+|+|+|....+.... ........+||-.|||||++...-
T Consensus       323 HLH~eI~GTqgKPaIAHRDlKSKNILVKkn-----~~C~IADLGLAv~h~~~t~~-idi~~N~rVGTKRYMAPEvLdeti  396 (513)
T KOG2052|consen  323 HLHMEIVGTQGKPAIAHRDLKSKNILVKKN-----GTCCIADLGLAVRHDSDTDT-IDIPPNPRVGTKRYMAPEVLDETI  396 (513)
T ss_pred             HHHHHHhcCCCCchhhccccccccEEEccC-----CcEEEeeceeeEEecccCCc-ccCCCCCccceeeccChHHhhhhc
Confidence            99952        69999999999999998     89999999999876553211 111223678999999999997654


Q ss_pred             CCccCCCCCcCchhhHHHHHHHHhc-----C-----CCCCcccccc---------ccccccccCCCCCCc---c--HHHH
Q psy4039         427 GLFSFVNYSKSDAWTAGTVAYEIFG-----H-----DNPFYQSARN---------TDYEVNALPQLNTNV---P--EVMR  482 (588)
Q Consensus       427 ~~~~~~~~~ksDVwS~Gvil~Ellt-----G-----~~Pf~~~~~~---------~~~~~~~~~~~~~~~---~--~~l~  482 (588)
                      ..-.+..+..+||||||.++||+..     |     .+||++...+         ..-....+|.+|...   |  ..+.
T Consensus       397 n~~~Fesyk~ADIYafgLVlWEiarRc~~ggi~eey~~Pyyd~Vp~DPs~eeMrkVVCv~~~RP~ipnrW~s~~~l~~m~  476 (513)
T KOG2052|consen  397 NMKHFESYKRADIYAFGLVLWEIARRCESGGIVEEYQLPYYDVVPSDPSFEEMRKVVCVQKLRPNIPNRWKSDPALRVMA  476 (513)
T ss_pred             ChhhhhhhhHHHHHHHHHHHHHHHHHhhcCCEehhhcCCcccCCCCCCCHHHHhcceeecccCCCCCcccccCHHHHHHH
Confidence            3222223456899999999999984     2     5788763211         111223344444332   2  3577


Q ss_pred             HHHHHhhhhCCCCCCCHHHHHHHHh
Q psy4039         483 RLVAKLLENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       483 ~Li~~~L~~dP~~Rps~~e~l~~L~  507 (588)
                      ++|+.||..||..|.|+--+-+.+.
T Consensus       477 klMkeCW~~Np~aRltALriKKtl~  501 (513)
T KOG2052|consen  477 KLMKECWYANPAARLTALRIKKTLA  501 (513)
T ss_pred             HHHHHhhcCCchhhhHHHHHHHHHH
Confidence            8999999999999999877666544

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=100.00  E-value=2.5e-35  Score=294.95  Aligned_cols=243  Identities=29%  Similarity=0.370  Sum_probs=195.6

Q ss_pred             CeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCce
Q psy4039         197 DIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNV  274 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNI  274 (588)
                      +|++.+.||+|+||.||++.+.  +..+|||.+.......               .....+.+|+.+++.+    +||||
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~---------------~~~~~~~~e~~~l~~l----~~~~i   61 (256)
T cd08530           1 DFKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQ---------------KEREDAVNEIRILASV----NHPNI   61 (256)
T ss_pred             CceEeeeecCCCceeEEEEEECCCCCEEEEEEEehhhccH---------------HHHHHHHHHHHHHHhC----CCCCc
Confidence            5888999999999999999886  7899999985322110               0122345688888887    89999


Q ss_pred             EEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh---cCCCCHHHHHHHHHHHH
Q psy4039         275 VVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER---CAQLSMHERVLLFTQLL  350 (588)
Q Consensus       275 V~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~---~~~l~~~~~~~i~~ql~  350 (588)
                      +++++++.+.                            ...++||||+ +++|.+++...   ...+++..++.++.|++
T Consensus        62 ~~~~~~~~~~----------------------------~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~  113 (256)
T cd08530          62 ISYKEAFLDG----------------------------NKLCIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLL  113 (256)
T ss_pred             hhhhhhhccC----------------------------CEEEEEehhcCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence            9999887652                            2589999999 57999998763   24789999999999999


Q ss_pred             HHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCcc
Q psy4039         351 EGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFS  430 (588)
Q Consensus       351 ~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~  430 (588)
                      .||.|||+.|++|+||+|+||+++.+     +.+||+|||++........       ....|++.|+|||.+.+..    
T Consensus       114 ~al~~lh~~~i~h~~l~~~ni~~~~~-----~~~kl~d~g~~~~~~~~~~-------~~~~~~~~~~~Pe~~~~~~----  177 (256)
T cd08530         114 RGLQALHEQKILHRDLKSANILLVAN-----DLVKIGDLGISKVLKKNMA-------KTQIGTPHYMAPEVWKGRP----  177 (256)
T ss_pred             HHHHHHhhCCcccCCCCcceEEEecC-----CcEEEeeccchhhhccCCc-------ccccCCccccCHHHHCCCC----
Confidence            99999999999999999999999987     7899999999987654311       1345888999999987654    


Q ss_pred             CCCCCcCchhhHHHHHHHHhcCCCCCcccccc---ccccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHH
Q psy4039         431 FVNYSKSDAWTAGTVAYEIFGHDNPFYQSARN---TDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAAT  504 (588)
Q Consensus       431 ~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~---~~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~  504 (588)
                        .+.++|+||+|+++|||++|+.||......   ........+..+..++.++++++.+||+.+|++||++.++++
T Consensus       178 --~~~~~D~~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~  252 (256)
T cd08530         178 --YSYKSDIWSLGCLLYEMATFAPPFEARSMQDLRYKVQRGKYPPIPPIYSQDLQNFIRSMLQVKPKLRPNCDKILA  252 (256)
T ss_pred             --CCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhcCCCCCCchhhCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence              346799999999999999999999764221   112223344555678899999999999999999999999998

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>KOG4250|consensus

Probab=100.00  E-value=6.1e-36  Score=321.36  Aligned_cols=207  Identities=23%  Similarity=0.281  Sum_probs=169.0

Q ss_pred             eEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceE
Q psy4039         198 IQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVV  275 (588)
Q Consensus       198 ~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV  275 (588)
                      +...+.||+|+||.||+|+++  |+.||||.+++...                ....+...+|+++|+++    +|||||
T Consensus        15 W~~~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~----------------~r~~e~~~~EieilkKL----nh~NIV   74 (732)
T KOG4250|consen   15 WEMDERLGKGAFGNVYRGRNKETGRLVAVKTFNKESS----------------LRPRERWCREIEILKKL----NHPNIV   74 (732)
T ss_pred             eeehhhhcCCccceeeeecccccccchhHHhhhhhcc----------------cchHHHHHHHHHHHHHc----Cchhhh
Confidence            455678999999999999987  99999999854331                22445667899999998    899999


Q ss_pred             EEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh--cCCCCHHHHHHHHHHHHHH
Q psy4039         276 VMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER--CAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       276 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~--~~~l~~~~~~~i~~ql~~g  352 (588)
                      +++++-++...                      ........++|||| +|||+..|.+.  ...|++.+.+.++.+++.|
T Consensus        75 k~f~iee~~~~----------------------~~~~~~~vlvmEyC~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~a  132 (732)
T KOG4250|consen   75 KLFDIEETKFL----------------------GLVTRLPVLVMEYCSGGSLRKVLNSPENAYGLPESEFLDLLSDLVSA  132 (732)
T ss_pred             hhcccCCcccc----------------------CcccccceEEEeecCCCcHHHHhcCcccccCCCHHHHHHHHHHHHHH
Confidence            99987554321                      01122478999999 68999999853  3479999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||++||+||||||.||++-...++. ..-||+|||+||..+++...      ...+||+.|.+||+...+.     .
T Consensus       133 l~~LrEn~IvHRDlKP~NIvl~~Gedgq-~IyKLtDfG~Arel~d~s~~------~S~vGT~~YLhPel~E~q~-----~  200 (732)
T KOG4250|consen  133 LRHLRENGIVHRDLKPGNIVLQIGEDGQ-SIYKLTDFGAARELDDNSLF------TSLVGTEEYLHPELYERQK-----K  200 (732)
T ss_pred             HHHHHHcCceeccCCCCcEEEeecCCCc-eEEeeecccccccCCCCCee------eeecCchhhcChHHHhhcc-----C
Confidence            9999999999999999999998765444 57899999999998775422      2688999999999998522     1


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcc
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQ  458 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~  458 (588)
                      ++.-+|.|||||++||++||..||..
T Consensus       201 y~~tVDLWS~GvtlY~caTG~lPF~p  226 (732)
T KOG4250|consen  201 YTATVDLWSFGVTLYECATGELPFIP  226 (732)
T ss_pred             cCceeehhhhhhHHHHHhccCCCCCc
Confidence            44569999999999999999999954

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=100.00  E-value=4e-35  Score=296.67  Aligned_cols=256  Identities=20%  Similarity=0.276  Sum_probs=191.7

Q ss_pred             CeEEeeeecccCceeEEEEEEC---CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         197 DIQIGKFIAKGTNAVVYEATFR---GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~~~---g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      +|++.+.||+|+||.||+|.+.   +..+|||.+..........       +.........+..|+.++...   .+|||
T Consensus         1 ~y~~~~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~-------~~~~~~~~~~~~~e~~~l~~~---~~h~~   70 (269)
T cd08528           1 EYAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKD-------KRERDKSIGDIVSEVTIIKEQ---LRHPN   70 (269)
T ss_pred             CchhhhhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccc-------cccchHHHHHHHHHHHHHhhc---CCCCC
Confidence            4788899999999999999986   4789999985422111000       000000112334566666543   48999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHH---hcCCCCHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRE---RCAQLSMHERVLLFTQL  349 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~---~~~~l~~~~~~~i~~ql  349 (588)
                      |+++++++.+..                            ..+++|||+ +++|.+++..   ....+++..++.++.|+
T Consensus        71 i~~~~~~~~~~~----------------------------~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l  122 (269)
T cd08528          71 IVRYYKTFLEND----------------------------RLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQM  122 (269)
T ss_pred             eeeEEeeEccCC----------------------------eEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence            999999887632                            489999999 5799988854   34479999999999999


Q ss_pred             HHHHHHHHh-CCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCC
Q psy4039         350 LEGVTHLNM-HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGL  428 (588)
Q Consensus       350 ~~gL~yLH~-~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~  428 (588)
                      +.||.|||+ .+|+|+||||+||+++.+     +.++|+|||++........      .....|+..|+|||++.+..  
T Consensus       123 ~~~l~~lh~~~~i~H~dl~~~nil~~~~-----~~~~l~dfg~~~~~~~~~~------~~~~~~~~~~~~Pe~~~~~~--  189 (269)
T cd08528         123 VLALRYLHKEKRIVHRDLTPNNIMLGED-----DKVTITDFGLAKQKQPESK------LTSVVGTILYSCPEIVKNEP--  189 (269)
T ss_pred             HHHHHHhccCCceeecCCCHHHEEECCC-----CcEEEecccceeecccccc------cccccCcccCcChhhhcCCC--
Confidence            999999996 789999999999999987     7899999999976544221      12456899999999997644  


Q ss_pred             ccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccc---ccc-ccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHH
Q psy4039         429 FSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY---EVN-ALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAAT  504 (588)
Q Consensus       429 ~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~---~~~-~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~  504 (588)
                          .+.++||||||+++|||++|+.||.........   ... ..+.....+++++.+++.+||+.||++||++.++.+
T Consensus       190 ----~~~~~Dv~slG~ll~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~e~~~  265 (269)
T cd08528         190 ----YGEKADVWAFGCILYQMCTLQPPFYSTNMLSLATKIVEAVYEPLPEGMYSEDVTDVITSCLTPDAEARPDIIQVSA  265 (269)
T ss_pred             ----CchHHHHHHHHHHHHHHHhCCCcccccCHHHHHHHHhhccCCcCCcccCCHHHHHHHHHHCCCCCccCCCHHHHHH
Confidence                457899999999999999999999663221111   111 112222367899999999999999999999999988


Q ss_pred             HHh
Q psy4039         505 VCQ  507 (588)
Q Consensus       505 ~L~  507 (588)
                      .+.
T Consensus       266 ~~~  268 (269)
T cd08528         266 MIS  268 (269)
T ss_pred             Hhc
Confidence            553

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>KOG1027|consensus

Probab=100.00  E-value=3.2e-36  Score=327.52  Aligned_cols=268  Identities=24%  Similarity=0.354  Sum_probs=202.2

Q ss_pred             eeeecccCcee-EEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEEee
Q psy4039         201 GKFIAKGTNAV-VYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHF  279 (588)
Q Consensus       201 ~~~IG~G~fG~-Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l~~  279 (588)
                      .+.+|.|+.|+ ||+|.+.|++||||++-                .|    ......+||..|+.-   -.|||||++|+
T Consensus       514 ~eilG~Gs~Gt~Vf~G~ye~R~VAVKrll----------------~e----~~~~A~rEi~lL~eS---D~H~NviRyyc  570 (903)
T KOG1027|consen  514 KEILGYGSNGTVVFRGVYEGREVAVKRLL----------------EE----FFDFAQREIQLLQES---DEHPNVIRYYC  570 (903)
T ss_pred             HHHcccCCCCcEEEEEeeCCceehHHHHh----------------hH----hHHHHHHHHHHHHhc---cCCCceEEEEe
Confidence            46789999986 79999999999999972                11    122346799998876   58999999986


Q ss_pred             eeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCC---CHHHHHHHHHHHHHHHHHH
Q psy4039         280 AFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQL---SMHERVLLFTQLLEGVTHL  356 (588)
Q Consensus       280 ~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l---~~~~~~~i~~ql~~gL~yL  356 (588)
                      .-.+.                            ..+||..|.|.++|.+++......+   .....+.++.|+++||+||
T Consensus       571 ~E~d~----------------------------qF~YIalELC~~sL~dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHL  622 (903)
T KOG1027|consen  571 SEQDR----------------------------QFLYIALELCACSLQDLIESSGLDVEMQSDIDPISVLSQIASGLAHL  622 (903)
T ss_pred             eccCC----------------------------ceEEEEehHhhhhHHHHHhccccchhhcccccHHHHHHHHHHHHHHH
Confidence            64442                            2599999999999999998731111   1144678999999999999


Q ss_pred             HhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCCc
Q psy4039         357 NMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSK  436 (588)
Q Consensus       357 H~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~k  436 (588)
                      |+.+||||||||.||||+.........++|+|||+|+....+... +. ......||-+|+|||++.....      ..+
T Consensus       623 Hsl~iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsKkl~~~~sS-~~-r~s~~sGt~GW~APE~L~~~~~------~~a  694 (903)
T KOG1027|consen  623 HSLKIVHRDLKPQNILISVPSADGTLRAKISDFGLSKKLAGGKSS-FS-RLSGGSGTSGWQAPEQLREDRK------TQA  694 (903)
T ss_pred             HhcccccccCCCceEEEEccCCCcceeEEecccccccccCCCcch-hh-cccCCCCcccccCHHHHhcccc------Ccc
Confidence            999999999999999998753334478999999999987765432 11 1336779999999999987753      357


Q ss_pred             CchhhHHHHHHHHhcC-CCCCcccccc------ccccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhh
Q psy4039         437 SDAWTAGTVAYEIFGH-DNPFYQSARN------TDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLY  509 (588)
Q Consensus       437 sDVwS~Gvil~ElltG-~~Pf~~~~~~------~~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~  509 (588)
                      +||||+||++|..++| .+||......      ..+......+.+..   ++.+||.+|+++||..||++.+++.     
T Consensus       695 vDiFslGCvfyYvltgG~HpFGd~~~R~~NIl~~~~~L~~L~~~~d~---eA~dLI~~ml~~dP~~RPsa~~VL~-----  766 (903)
T KOG1027|consen  695 VDIFSLGCVFYYVLTGGSHPFGDSLERQANILTGNYTLVHLEPLPDC---EAKDLISRMLNPDPQLRPSATDVLN-----  766 (903)
T ss_pred             cchhhcCceEEEEecCCccCCCchHHhhhhhhcCccceeeeccCchH---HHHHHHHHhcCCCcccCCCHHHHhC-----
Confidence            8999999999999986 8999875333      33333333222222   8999999999999999999999999     


Q ss_pred             hhcCCccccCCCCChhHHHHHHHhhhccccccCc
Q psy4039         510 LWAPKHWLYGATPSHNEIMQWLLTLTTKVLCTGV  543 (588)
Q Consensus       510 ~~~~h~w~~~~~~~~~~~~~~l~~~~~~~~~~~~  543 (588)
                          ||+|=    +.+..++.+...+..+.-+.+
T Consensus       767 ----HPlFW----~~ekrL~Fl~dvSDRvE~e~r  792 (903)
T KOG1027|consen  767 ----HPLFW----DSEKRLSFLRDVSDRVEKENR  792 (903)
T ss_pred             ----CCccC----ChHHHHHHHHhhhhhhhhhhc
Confidence                88762    334455666666555544444

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=100.00  E-value=1.4e-34  Score=322.54  Aligned_cols=269  Identities=18%  Similarity=0.207  Sum_probs=177.1

Q ss_pred             ccccccCCeEEeeeecccCceeEEEEEEC------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHh
Q psy4039         190 VDDVKVDDIQIGKFIAKGTNAVVYEATFR------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMN  263 (588)
Q Consensus       190 ~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~  263 (588)
                      ...+..++|++.+.||+|+||.||+|++.      +..||||++.....                        .|+.+..
T Consensus       126 ~~~~~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~~------------------------~e~~~~e  181 (566)
T PLN03225        126 RPSFKKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYGA------------------------VEIWMNE  181 (566)
T ss_pred             CCCCccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccch------------------------hHHHHHH
Confidence            34566799999999999999999999986      57899999742110                        0111111


Q ss_pred             hhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCC------
Q psy4039         264 SVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQ------  336 (588)
Q Consensus       264 ~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~------  336 (588)
                      .+.+ ..+.+++.+...+....                      ........++||||+ +++|.+++......      
T Consensus       182 ~l~~-~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~LV~ey~~~gsL~~~l~~~~~~~~v~~~  238 (566)
T PLN03225        182 RVRR-ACPNSCADFVYGFLEPV----------------------SSKKEDEYWLVWRYEGESTLADLMQSKEFPYNVEPY  238 (566)
T ss_pred             HHHh-hchhhHHHHHHhhhccc----------------------ccccCCceEEEEEecCCCcHHHHHHhcCCchhHHHH
Confidence            1110 02333333222222110                      001123589999999 57999998754211      


Q ss_pred             -------------CCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCcccc
Q psy4039         337 -------------LSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQY  403 (588)
Q Consensus       337 -------------l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~  403 (588)
                                   ..+..+..++.||+.||.|||+++|+||||||+|||++.+.    +.+||+|||+|+....+...  
T Consensus       239 l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~~gIiHRDLKP~NILl~~~~----~~~KL~DFGlA~~l~~~~~~--  312 (566)
T PLN03225        239 LLGKVQDLPKGLERENKIIQTIMRQILFALDGLHSTGIVHRDVKPQNIIFSEGS----GSFKIIDLGAAADLRVGINY--  312 (566)
T ss_pred             hccchhhccccchhhHHHHHHHHHHHHHHHHHHHHCCEEeCcCCHHHEEEeCCC----CcEEEEeCCCcccccccccc--
Confidence                         12334668999999999999999999999999999998642    68999999999865443221  


Q ss_pred             ccccccccCCccccchhHHhcCCCCc----------------cCCCCCcCchhhHHHHHHHHhcCCCCCccccc------
Q psy4039         404 SSADIELGGNVALMAPEVALATPGLF----------------SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSAR------  461 (588)
Q Consensus       404 ~~~~~~~~GT~~Y~APE~l~~~~~~~----------------~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~------  461 (588)
                        ......||+.|||||.+.......                ...++.++|||||||++|||+++..|+.....      
T Consensus       313 --~~~~~~~t~~Y~APE~~~~~~~~~~~~~~~~~~~~sp~l~~~~~~~k~DVwSlGviL~el~~~~~~~~~~~~~~~~~l  390 (566)
T PLN03225        313 --IPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDIYSAGLIFLQMAFPNLRSDSNLIQFNRQL  390 (566)
T ss_pred             --CCcccccCCCccChHHhhccCCCCCCccccccccccchhccccCCCCcccHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence              112467999999999775432211                11234568999999999999998777644211      


Q ss_pred             -cccccc-----cccCC----------CCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccCCCC
Q psy4039         462 -NTDYEV-----NALPQ----------LNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGATP  522 (588)
Q Consensus       462 -~~~~~~-----~~~~~----------~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~~~  522 (588)
                       ......     ...+.          ..+..+....+||.+||+.||.+|||++++++         |||++...+
T Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~dLi~~mL~~dP~kR~ta~e~L~---------Hpff~~~~~  458 (566)
T PLN03225        391 KRNDYDLVAWRKLVEPRASPDLRRGFEVLDLDGGAGWELLKSMMRFKGRQRISAKAALA---------HPYFDREGL  458 (566)
T ss_pred             HhcCCcHHHHHHhhccccchhhhhhhhhccccchHHHHHHHHHccCCcccCCCHHHHhC---------CcCcCCCCc
Confidence             000000     00000          01112334569999999999999999999999         999985443

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=100.00  E-value=3.1e-35  Score=293.02  Aligned_cols=226  Identities=19%  Similarity=0.205  Sum_probs=177.7

Q ss_pred             cCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEEeeeeecc
Q psy4039         207 GTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDF  284 (588)
Q Consensus       207 G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l~~~~~~~  284 (588)
                      |.||.||++.+.  ++.||+|.+....                      ...+|...+...    .||||+++++++.+.
T Consensus         4 g~~~~v~~~~~~~~~~~~~~K~i~~~~----------------------~~~~~~~~~~~~----~~~~i~~~~~~~~~~   57 (237)
T cd05576           4 GVIDKVLLVMDTRTQQTFILKGLRKSS----------------------EYSRERLTIIPH----CVPNMVCLHKYIVSE   57 (237)
T ss_pred             cccceEEEEEEccCCcEEEEEeecchh----------------------hhhhHHHHHHhc----CCCceeehhhheecC
Confidence            899999999996  7899999985321                      111233222222    699999999988763


Q ss_pred             CCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCcee
Q psy4039         285 VPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAH  363 (588)
Q Consensus       285 ~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yLH~~~IvH  363 (588)
                      .                            ..+++|||+ +|+|.+++.... .+++..+..++.|+++||.|||++||+|
T Consensus        58 ~----------------------------~~~lv~e~~~~~~L~~~l~~~~-~l~~~~~~~~~~ql~~~l~~lH~~~i~H  108 (237)
T cd05576          58 D----------------------------SVFLVLQHAEGGKLWSHISKFL-NIPEECVKRWAAEMVVALDALHREGIVC  108 (237)
T ss_pred             C----------------------------eEEEEEecCCCCCHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHhCCeec
Confidence            2                            489999999 579999997654 6999999999999999999999999999


Q ss_pred             ccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCCcCchhhHH
Q psy4039         364 RDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAG  443 (588)
Q Consensus       364 rDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~G  443 (588)
                      |||||+||+++.+     +.++++|||.+.......        ....++..|+|||.+.+..      .+.++||||+|
T Consensus       109 ~dlkp~Nil~~~~-----~~~~l~df~~~~~~~~~~--------~~~~~~~~y~aPE~~~~~~------~~~~~DvwslG  169 (237)
T cd05576         109 RDLNPNNILLDDR-----GHIQLTYFSRWSEVEDSC--------DGEAVENMYCAPEVGGISE------ETEACDWWSLG  169 (237)
T ss_pred             cCCCHHHEEEcCC-----CCEEEecccchhcccccc--------ccCCcCccccCCcccCCCC------CCchhhHHHHH
Confidence            9999999999987     789999999886554321        1234677899999886544      34679999999


Q ss_pred             HHHHHHhcCCCCCccccccccccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCH-----HHHHHHHhhhhhcCCccc
Q psy4039         444 TVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSA-----ELAATVCQLYLWAPKHWL  517 (588)
Q Consensus       444 vil~ElltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~-----~e~l~~L~~~~~~~h~w~  517 (588)
                      |++|||++|+.|+........  ......++..+++.+++++.+||+.||++||++     +++++         |||+
T Consensus       170 ~il~el~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~~~---------h~~~  237 (237)
T cd05576         170 AILFELLTGKTLVECHPSGIN--THTTLNIPEWVSEEARSLLQQLLQFNPTERLGAGVAGVEDIKS---------HPFF  237 (237)
T ss_pred             HHHHHHHHCcchhhcCchhcc--cccccCCcccCCHHHHHHHHHHccCCHHHhcCCCccchHHHHc---------CCCC
Confidence            999999999998764322111  111123556788999999999999999999996     77777         9996

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>KOG0696|consensus

Probab=100.00  E-value=3.1e-36  Score=304.36  Aligned_cols=248  Identities=21%  Similarity=0.303  Sum_probs=199.8

Q ss_pred             CccccccCCeEEeeeecccCceeEEEEEECC--eeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhc
Q psy4039         189 DVDDVKVDDIQIGKFIAKGTNAVVYEATFRG--VEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVE  266 (588)
Q Consensus       189 ~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~g--~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~  266 (588)
                      ....+...+|.+..+||+|+||.|..|..+|  ..||||++++..+..++              ..+--..|.++|..- 
T Consensus       342 ~~d~i~~tDFnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQdD--------------Dvectm~EKrvLAL~-  406 (683)
T KOG0696|consen  342 KRDRIKATDFNFLMVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQDD--------------DVECTMVEKRVLALP-  406 (683)
T ss_pred             cccceeecccceEEEeccCccceeeeecccCcchhhhhhhhccceeeecC--------------cccceehhhhheecC-
Confidence            4446788899999999999999999999884  57999999764433222              111112355555443 


Q ss_pred             CCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHH
Q psy4039         267 NLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLL  345 (588)
Q Consensus       267 ~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i  345 (588)
                        .+-|.+++|+.+|+..+                            .+|.||||+ +|+|--.+.+-+ ++.+..+..+
T Consensus       407 --~kppFL~qlHScFQTmD----------------------------RLyFVMEyvnGGDLMyhiQQ~G-kFKEp~AvFY  455 (683)
T KOG0696|consen  407 --GKPPFLVQLHSCFQTMD----------------------------RLYFVMEYVNGGDLMYHIQQVG-KFKEPVAVFY  455 (683)
T ss_pred             --CCCchHHHHHHHhhhhh----------------------------heeeEEEEecCchhhhHHHHhc-ccCCchhhhh
Confidence              46889999999998754                            399999999 579988887765 8999999999


Q ss_pred             HHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcC
Q psy4039         346 FTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALAT  425 (588)
Q Consensus       346 ~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~  425 (588)
                      +..|+-||-+||++|||.||||.+|||+|.+     +++||+|||+++.--.+.     ..+.++||||.|+|||++..+
T Consensus       456 AaEiaigLFFLh~kgIiYRDLKLDNvmLd~e-----GHiKi~DFGmcKEni~~~-----~TTkTFCGTPdYiAPEIi~Yq  525 (683)
T KOG0696|consen  456 AAEIAIGLFFLHSKGIIYRDLKLDNVMLDSE-----GHIKIADFGMCKENIFDG-----VTTKTFCGTPDYIAPEIIAYQ  525 (683)
T ss_pred             hHHHHHHhhhhhcCCeeeeeccccceEeccC-----CceEeeecccccccccCC-----cceeeecCCCcccccceEEec
Confidence            9999999999999999999999999999998     999999999997632211     122378999999999999988


Q ss_pred             CCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccccc--cccCCCCCCccHHHHHHHHHhhhhCCCCCCC
Q psy4039         426 PGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV--NALPQLNTNVPEVMRRLVAKLLENDPSDRPS  498 (588)
Q Consensus       426 ~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~--~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps  498 (588)
                      +      |+..+|+|||||+||||+.|++||.++.....+..  ...-..|..+|.++.++++..|...|.+|..
T Consensus       526 P------YgksvDWWa~GVLLyEmlaGQpPFdGeDE~elF~aI~ehnvsyPKslSkEAv~ickg~ltK~P~kRLG  594 (683)
T KOG0696|consen  526 P------YGKSVDWWAFGVLLYEMLAGQPPFDGEDEDELFQAIMEHNVSYPKSLSKEAVAICKGLLTKHPGKRLG  594 (683)
T ss_pred             c------cccchhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHccCcCcccccHHHHHHHHHHhhcCCccccC
Confidence            8      45678999999999999999999998655443321  2223567889999999999999999999964

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=100.00  E-value=5.1e-35  Score=333.24  Aligned_cols=147  Identities=21%  Similarity=0.292  Sum_probs=124.4

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      +++|.+.+.||+|+||.||+|.+.  ++.||||++........              .....+.+|+.++..+    +||
T Consensus         3 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~--------------~~~~~~~~E~~~l~~l----~hp   64 (669)
T cd05610           3 IEEFVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINK--------------NMVHQVQAERDALALS----KSP   64 (669)
T ss_pred             cCCEEEEEEEecCCCeEEEEEEECCCCcEEEEEEEehhhccCH--------------HHHHHHHHHHHHHHhc----CCC
Confidence            489999999999999999999998  88999999854221110              0123455688888776    999


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLE  351 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~  351 (588)
                      ||+++++++....                            .+|+||||+ +++|.+++...+ .+++..++.|+.||+.
T Consensus        65 ~Iv~~~~~~~~~~----------------------------~~~lVmEy~~g~~L~~li~~~~-~l~~~~~~~i~~qil~  115 (669)
T cd05610          65 FIVHLYYSLQSAN----------------------------NVYLVMEYLIGGDVKSLLHIYG-YFDEEMAVKYISEVAL  115 (669)
T ss_pred             CcCeEEEEEEECC----------------------------EEEEEEeCCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence            9999998887532                            499999999 689999997654 7899999999999999


Q ss_pred             HHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeecccccc
Q psy4039         352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSY  393 (588)
Q Consensus       352 gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~  393 (588)
                      ||.|||+++|+||||||+|||++.+     +.+||+|||+++
T Consensus       116 aL~yLH~~gIiHrDLKP~NILl~~~-----g~vkL~DFGls~  152 (669)
T cd05610         116 ALDYLHRHGIIHRDLKPDNMLISNE-----GHIKLTDFGLSK  152 (669)
T ss_pred             HHHHHHhCCEEeCCccHHHEEEcCC-----CCEEEEeCCCCc
Confidence            9999999999999999999999877     789999999986

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=100.00  E-value=5.6e-35  Score=291.65  Aligned_cols=242  Identities=25%  Similarity=0.383  Sum_probs=193.8

Q ss_pred             ecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEEeeee
Q psy4039         204 IAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAF  281 (588)
Q Consensus       204 IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l~~~~  281 (588)
                      ||.|+||.||++.+.  +..||+|.+........              .....+.+|+.+++.+    +||||+++++.+
T Consensus         1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~--------------~~~~~~~~e~~~l~~l----~h~~i~~~~~~~   62 (250)
T cd05123           1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKR--------------KEVEHTLTERNILSRI----NHPFIVKLHYAF   62 (250)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEeehhhhcch--------------HHHHHHHHHHHHHHHc----CCCcHHHHHHHe
Confidence            799999999999987  78999999854321111              0223456788888887    899999999887


Q ss_pred             eccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC
Q psy4039         282 TDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHR  360 (588)
Q Consensus       282 ~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yLH~~~  360 (588)
                      .+.                            ...+++||++ +++|.+++.... .+++..+..++.|+++||.|||+.+
T Consensus        63 ~~~----------------------------~~~~~v~e~~~~~~L~~~l~~~~-~l~~~~~~~~~~qi~~~l~~lh~~~  113 (250)
T cd05123          63 QTE----------------------------EKLYLVLEYAPGGELFSHLSKEG-RFSEERARFYAAEIVLALEYLHSLG  113 (250)
T ss_pred             ecC----------------------------CeeEEEEecCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            652                            1489999999 789999998764 7899999999999999999999999


Q ss_pred             ceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCCcCchh
Q psy4039         361 TAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAW  440 (588)
Q Consensus       361 IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVw  440 (588)
                      ++|+||||+||+++.+     +.++|+|||++........     ......|+..|+|||...+..      .+.++|+|
T Consensus       114 ~~H~~l~p~ni~~~~~-----~~~~l~d~~~~~~~~~~~~-----~~~~~~~~~~~~~Pe~~~~~~------~~~~~D~~  177 (250)
T cd05123         114 IIYRDLKPENILLDAD-----GHIKLTDFGLAKELSSEGS-----RTNTFCGTPEYLAPEVLLGKG------YGKAVDWW  177 (250)
T ss_pred             ceecCCCcceEEEcCC-----CcEEEeecCcceecccCCC-----cccCCcCCccccChHHhCCCC------CCchhhHH
Confidence            9999999999999987     7899999999877544211     112456888999999987654      34679999


Q ss_pred             hHHHHHHHHhcCCCCCcccccccccc--ccccCCCCCCccHHHHHHHHHhhhhCCCCCCCH---HHHHHHHhhhhhcCCc
Q psy4039         441 TAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSA---ELAATVCQLYLWAPKH  515 (588)
Q Consensus       441 S~Gvil~ElltG~~Pf~~~~~~~~~~--~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~---~e~l~~L~~~~~~~h~  515 (588)
                      |||+++|++++|..||..........  ......++..++..+.+++++||..||++||++   +++++         ||
T Consensus       178 slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~p~~R~~~~~~~~l~~---------~~  248 (250)
T cd05123         178 SLGVLLYEMLTGKPPFYAEDRKEIYEKILKDPLRFPEFLSPEARDLISGLLQKDPTKRLGSGGAEEIKA---------HP  248 (250)
T ss_pred             HHHHHHHHHHHCCCCCCCCCHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhcCCHhhCCCcccHHHHHh---------CC
Confidence            99999999999999996543211111  112345667789999999999999999999999   88888         99


Q ss_pred             cc
Q psy4039         516 WL  517 (588)
Q Consensus       516 w~  517 (588)
                      ||
T Consensus       249 ~f  250 (250)
T cd05123         249 FF  250 (250)
T ss_pred             CC
Confidence            96

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>KOG0199|consensus

Probab=100.00  E-value=7.6e-36  Score=317.58  Aligned_cols=250  Identities=20%  Similarity=0.245  Sum_probs=202.0

Q ss_pred             cccCCeEEeeeecccCceeEEEEEEC-----CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcC
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFR-----GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVEN  267 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~-----g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~  267 (588)
                      |..++..+.++||+|+||+|++|.|.     ...||||+++.....                ....+|.+|+.+|-+|  
T Consensus       107 Ipee~i~l~e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~----------------~~mddflrEas~M~~L--  168 (1039)
T KOG0199|consen  107 IPEEQIKLYELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLN----------------AIMDDFLREASHMLKL--  168 (1039)
T ss_pred             ccHHHHHHHHHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccc----------------hhHHHHHHHHHHHHhc--
Confidence            44566778899999999999999998     357999999643211                1335678899999887  


Q ss_pred             CCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHH-hcCCCCHHHHHHH
Q psy4039         268 LPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRE-RCAQLSMHERVLL  345 (588)
Q Consensus       268 l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~-~~~~l~~~~~~~i  345 (588)
                        +|||+|+|||+..++.                             +.+|||.+ .|||.+.|++ ....|-......+
T Consensus       169 --~H~hliRLyGvVl~qp-----------------------------~mMV~ELaplGSLldrLrka~~~~llv~~Lcdy  217 (1039)
T KOG0199|consen  169 --QHPHLIRLYGVVLDQP-----------------------------AMMVFELAPLGSLLDRLRKAKKAILLVSRLCDY  217 (1039)
T ss_pred             --cCcceeEEeeeeccch-----------------------------hhHHhhhcccchHHHHHhhccccceeHHHHHHH
Confidence              9999999999987632                             78999999 5899999998 3446888899999


Q ss_pred             HHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcC
Q psy4039         346 FTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALAT  425 (588)
Q Consensus       346 ~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~  425 (588)
                      +.||+.|+.||.+++.|||||-..|||+...     ..+||+|||+.|.++.+..+- . ......-...|+|||.+...
T Consensus       218 a~QiA~aM~YLeskrlvHRDLAARNlllasp-----rtVKI~DFGLmRaLg~ned~Y-v-m~p~rkvPfAWCaPEsLrh~  290 (1039)
T KOG0199|consen  218 AMQIAKAMQYLESKRLVHRDLAARNLLLASP-----RTVKICDFGLMRALGENEDMY-V-MAPQRKVPFAWCAPESLRHR  290 (1039)
T ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhheeccc-----ceeeeecccceeccCCCCcce-E-ecCCCcCcccccCHhHhccc
Confidence            9999999999999999999999999999876     699999999999987644321 1 11122245689999999876


Q ss_pred             CCCccCCCCCcCchhhHHHHHHHHhc-CCCCCccccccc---cccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHH
Q psy4039         426 PGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNT---DYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAEL  501 (588)
Q Consensus       426 ~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~---~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e  501 (588)
                      .      ++.++|||+|||++|||++ |+.||.+.....   .+....+-+-+..||+++.+++..||..+|++|||+..
T Consensus       291 k------FShaSDvWmyGVTiWEMFtyGEePW~G~~g~qIL~~iD~~erLpRPk~csedIY~imk~cWah~paDRptFsa  364 (1039)
T KOG0199|consen  291 K------FSHASDVWMYGVTIWEMFTYGEEPWVGCRGIQILKNIDAGERLPRPKYCSEDIYQIMKNCWAHNPADRPTFSA  364 (1039)
T ss_pred             c------ccccchhhhhhhhHHhhhccCCCCCCCCCHHHHHHhccccccCCCCCCChHHHHHHHHHhccCCccccccHHH
Confidence            5      5578999999999999998 789998742221   22234444567899999999999999999999999999


Q ss_pred             HHH
Q psy4039         502 AAT  504 (588)
Q Consensus       502 ~l~  504 (588)
                      +.+
T Consensus       365 ir~  367 (1039)
T KOG0199|consen  365 IRE  367 (1039)
T ss_pred             HHH
Confidence            864

>KOG0662|consensus

Probab=100.00  E-value=3.2e-35  Score=268.40  Aligned_cols=254  Identities=24%  Similarity=0.294  Sum_probs=200.0

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      .+|+..++||+|.||+||+|+..  +..||+|.++..+..            |.++.   ...+||-+++.+    +|.|
T Consensus         2 ~~ydkmekigegtygtvfkarn~~t~eivalkrvrldddd------------egvps---salreicllkel----khkn   62 (292)
T KOG0662|consen    2 QKYDKMEKIGEGTYGTVFKARNRETHEIVALKRVRLDDDD------------EGVPS---SALREICLLKEL----KHKN   62 (292)
T ss_pred             cchHHHHhhcCCcceeeEecccCCccceEEEEEEeccCCC------------CCCcH---HHHHHHHHHHHh----hhcc
Confidence            45777889999999999999987  789999999754322            11221   235799999998    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      ||+++++...+.                            .+-+|+|||+.+|.+|.....+.++.+.+..++.|+++||
T Consensus        63 ivrl~dvlhsdk----------------------------kltlvfe~cdqdlkkyfdslng~~d~~~~rsfmlqllrgl  114 (292)
T KOG0662|consen   63 IVRLHDVLHSDK----------------------------KLTLVFEFCDQDLKKYFDSLNGDLDPEIVRSFMLQLLRGL  114 (292)
T ss_pred             eeehhhhhccCc----------------------------eeEEeHHHhhHHHHHHHHhcCCcCCHHHHHHHHHHHHhhh
Confidence            999999877643                            3899999999999999998877999999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN  433 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~  433 (588)
                      .|+|++++.||||||.|.||+.+     +.+|++|||+|+.++-... .++    ..+-|..|.+|.++.+..-     +
T Consensus       115 ~fchshnvlhrdlkpqnllin~n-----gelkladfglarafgipvr-cys----aevvtlwyrppdvlfgakl-----y  179 (292)
T KOG0662|consen  115 GFCHSHNVLHRDLKPQNLLINRN-----GELKLADFGLARAFGIPVR-CYS----AEVVTLWYRPPDVLFGAKL-----Y  179 (292)
T ss_pred             hhhhhhhhhhccCCcceEEeccC-----CcEEecccchhhhcCCceE-eee----ceeeeeeccCcceeeeeeh-----h
Confidence            99999999999999999999988     8999999999998765322 122    3457899999999987652     5


Q ss_pred             CCcCchhhHHHHHHHHhc-CCCCCcccccccc----------ccccccCC------------CC---------CCccHHH
Q psy4039         434 YSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD----------YEVNALPQ------------LN---------TNVPEVM  481 (588)
Q Consensus       434 ~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~----------~~~~~~~~------------~~---------~~~~~~l  481 (588)
                      ++..|+||.|||+.|+.. |++.|.+......          .....+|.            ++         +.++..-
T Consensus       180 ~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~ed~wps~t~lpdyk~yp~ypattswsqivp~lns~g  259 (292)
T KOG0662|consen  180 STSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEDQWPSMTKLPDYKPYPIYPATTSWSQIVPKLNSTG  259 (292)
T ss_pred             ccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCccccCCccccCCCCcccCCccccchHHHHhhhhcchh
Confidence            577899999999999986 6666665211000          01111111            11         1223345


Q ss_pred             HHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccCC
Q psy4039         482 RRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGA  520 (588)
Q Consensus       482 ~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~  520 (588)
                      +||++++|.-+|.+|++++++++         ||++...
T Consensus       260 rdllqkll~cnp~qrisaeaalq---------hpyf~d~  289 (292)
T KOG0662|consen  260 RDLLQKLLKCNPAQRISAEAALQ---------HPYFSDF  289 (292)
T ss_pred             HHHHHHHhccCcccccCHHHHhc---------Ccccccc
Confidence            89999999999999999999999         9998744

>KOG0614|consensus

Probab=100.00  E-value=1.9e-36  Score=312.76  Aligned_cols=257  Identities=21%  Similarity=0.319  Sum_probs=213.8

Q ss_pred             CccccccCCeEEeeeecccCceeEEEEEECCee--EEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhc
Q psy4039         189 DVDDVKVDDIQIGKFIAKGTNAVVYEATFRGVE--YALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVE  266 (588)
Q Consensus       189 ~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~g~~--vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~  266 (588)
                      +...+.+.+++....||-||||.|=.....++.  +|+|++++..+...              ...+-+-.|-.||..+ 
T Consensus       413 e~a~v~l~dl~~iaTLGvGgFGRVELV~~~~~~~~fAlKilkK~hIVdt--------------kQqeHv~sEr~Im~~~-  477 (732)
T KOG0614|consen  413 EFAQVKLSDLKRIATLGVGGFGRVELVKVNSQKATFALKILKKKHIVDT--------------KQQEHVFSERNIMMEC-  477 (732)
T ss_pred             hhcccchhhhhhhhhcccCccceEEEEEecccchHHHHHHHhHhhccch--------------hHHHHHHhHHHHHHhc-
Confidence            334567789999999999999999988887554  89998865332211              1223345688888887 


Q ss_pred             CCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHH
Q psy4039         267 NLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLL  345 (588)
Q Consensus       267 ~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i  345 (588)
                         +.|.||+||..|.+..                            ++|++||-| +|.|-..|++++ .+++..+..+
T Consensus       478 ---~s~fIvrLYrTfrd~k----------------------------yvYmLmEaClGGElWTiLrdRg-~Fdd~tarF~  525 (732)
T KOG0614|consen  478 ---RSDFIVRLYRTFRDSK----------------------------YVYMLMEACLGGELWTILRDRG-SFDDYTARFY  525 (732)
T ss_pred             ---CchHHHHHHHHhccch----------------------------hhhhhHHhhcCchhhhhhhhcC-Ccccchhhhh
Confidence               8999999999988743                            499999999 899999999886 8999999999


Q ss_pred             HHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcC
Q psy4039         346 FTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALAT  425 (588)
Q Consensus       346 ~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~  425 (588)
                      +..+++|++|||++|||.|||||+|.++|.+     +-+||.|||+|+.+..+...      -++||||.|.|||++...
T Consensus       526 ~acv~EAfeYLH~k~iIYRDLKPENllLd~~-----Gy~KLVDFGFAKki~~g~KT------wTFcGTpEYVAPEIILnK  594 (732)
T KOG0614|consen  526 VACVLEAFEYLHRKGIIYRDLKPENLLLDNR-----GYLKLVDFGFAKKIGSGRKT------WTFCGTPEYVAPEIILNK  594 (732)
T ss_pred             HHHHHHHHHHHHhcCceeccCChhheeeccC-----CceEEeehhhHHHhccCCce------eeecCCcccccchhhhcc
Confidence            9999999999999999999999999999988     89999999999998775432      279999999999999877


Q ss_pred             CCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccccc----cccCCCCCCccHHHHHHHHHhhhhCCCCCCC---
Q psy4039         426 PGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV----NALPQLNTNVPEVMRRLVAKLLENDPSDRPS---  498 (588)
Q Consensus       426 ~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~----~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps---  498 (588)
                      .      ...++|.||+|+++|||++|.+||.+......|..    .....+|..++..+.+||+++...+|.+|..   
T Consensus       595 G------HD~avDyWaLGIli~ELL~G~pPFs~~dpmktYn~ILkGid~i~~Pr~I~k~a~~Lik~LCr~~P~ERLG~~~  668 (732)
T KOG0614|consen  595 G------HDRAVDYWALGILIYELLTGSPPFSGVDPMKTYNLILKGIDKIEFPRRITKTATDLIKKLCRDNPTERLGYQK  668 (732)
T ss_pred             C------cchhhHHHHHHHHHHHHHcCCCCCCCCchHHHHHHHHhhhhhhhcccccchhHHHHHHHHHhcCcHhhhcccc
Confidence            6      34569999999999999999999988655544432    3344677899999999999999999999986   


Q ss_pred             --HHHHHHHHhhhhhcCCcccc
Q psy4039         499 --AELAATVCQLYLWAPKHWLY  518 (588)
Q Consensus       499 --~~e~l~~L~~~~~~~h~w~~  518 (588)
                        ..++-.         |.||.
T Consensus       669 ~gI~DIkk---------H~Wf~  681 (732)
T KOG0614|consen  669 GGINDIKK---------HRWFE  681 (732)
T ss_pred             CChHHHHh---------hhhhh
Confidence              667666         88876

>KOG0608|consensus

Probab=100.00  E-value=8.2e-35  Score=306.60  Aligned_cols=260  Identities=20%  Similarity=0.239  Sum_probs=197.6

Q ss_pred             ccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCC
Q psy4039         192 DVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLP  269 (588)
Q Consensus       192 ~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~  269 (588)
                      ..+..-|..++.||-|+||.|.++.-.  ...||.|.+++.+.-      ++.        ...-+..|-.||..-    
T Consensus       625 KMdKSmFvkik~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKaDVl------~rn--------QvaHVKAERDILAEA----  686 (1034)
T KOG0608|consen  625 KMDKSMFVKIKTIGVGAFGEVCLVRKVDTRALYAMKTLRKADVL------MRN--------QVAHVKAERDILAEA----  686 (1034)
T ss_pred             hccccceEEEeeecccccceeEEEeecchhhHHHHhhhHHHHHH------hhh--------hhhhhhhhhhhHhhc----
Confidence            344467999999999999999988754  567888887643211      110        111234577888886    


Q ss_pred             CCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHH
Q psy4039         270 PHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQ  348 (588)
Q Consensus       270 ~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~q  348 (588)
                      ..+-||+||..|+|++                            ++|+||+|. +|++-.+|-..+ .|.|..++.++..
T Consensus       687 Dn~WVVrLyySFQDkd----------------------------nLYFVMdYIPGGDmMSLLIrmg-IFeE~LARFYIAE  737 (1034)
T KOG0608|consen  687 DNEWVVRLYYSFQDKD----------------------------NLYFVMDYIPGGDMMSLLIRMG-IFEEDLARFYIAE  737 (1034)
T ss_pred             CCcceEEEEEEeccCC----------------------------ceEEEEeccCCccHHHHHHHhc-cCHHHHHHHHHHH
Confidence            8999999999999854                            599999999 789998887765 8999999999999


Q ss_pred             HHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCC---------CCcc-----ccc----------
Q psy4039         349 LLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKS---------GLSM-----QYS----------  404 (588)
Q Consensus       349 l~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~---------~~~~-----~~~----------  404 (588)
                      +..|+++.|..|+|||||||+|||||.+     +++||+|||+|.-+..         +...     ..+          
T Consensus       738 ltcAiesVHkmGFIHRDiKPDNILIDrd-----GHIKLTDFGLCTGfRWTHdskYYq~gdH~RqDSmep~~e~~d~~~~l  812 (1034)
T KOG0608|consen  738 LTCAIESVHKMGFIHRDIKPDNILIDRD-----GHIKLTDFGLCTGFRWTHDSKYYQEGDHHRQDSMEPSPEWADISKCL  812 (1034)
T ss_pred             HHHHHHHHHhccceecccCccceEEccC-----CceeeeeccccccceeccccccccCCCccccccCCCchhhccccccc
Confidence            9999999999999999999999999999     9999999999964321         1000     000          


Q ss_pred             -------------cccccccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccc------cccc
Q psy4039         405 -------------SADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSAR------NTDY  465 (588)
Q Consensus       405 -------------~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~------~~~~  465 (588)
                                   ...-..+||+.|+|||++....      ++..||+||.|||||||+.|++||..+..      ...+
T Consensus       813 kvL~~ra~~~h~r~~ahslvgt~nyiapevl~r~g------~~q~cdwws~gvil~em~~g~~pf~~~tp~~tq~kv~nw  886 (1034)
T KOG0608|consen  813 KVLERRAMRQHQRILAHSLVGTPNYIAPEVLARTG------YTQLCDWWSVGVILYEMLVGQPPFLADTPGETQYKVINW  886 (1034)
T ss_pred             hHHHHHHHhhhhhhhhhhhcCCCcccChHHhcccC------ccccchhhHhhHHHHHHhhCCCCccCCCCCcceeeeeeh
Confidence                         0011346999999999997665      44679999999999999999999976422      2223


Q ss_pred             cccccCCCCCCccHHHHHHHHHhhhhCCCCCCC---HHHHHHHHhhhhhcCCccccC
Q psy4039         466 EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS---AELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       466 ~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps---~~e~l~~L~~~~~~~h~w~~~  519 (588)
                      ..........+++.++.++|.+++. ++++|..   ++++.+         ||||+.
T Consensus       887 ~~~l~~~~~~~ls~e~~~li~kLc~-sad~RLGkng~d~vKa---------HpfFkg  933 (1034)
T KOG0608|consen  887 RNFLHIPYQGNLSKEALDLIQKLCC-SADSRLGKNGADQVKA---------HPFFKG  933 (1034)
T ss_pred             hhccccccccccCHHHHHHHHHHhc-Chhhhhcccchhhhhc---------Cccccc
Confidence            3333333456789999999998663 6778864   666777         999983

>KOG1006|consensus

Probab=100.00  E-value=2.5e-36  Score=290.81  Aligned_cols=262  Identities=21%  Similarity=0.216  Sum_probs=201.7

Q ss_pred             CCccccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhh
Q psy4039         188 PDVDDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSV  265 (588)
Q Consensus       188 ~~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l  265 (588)
                      ...+++.-++++-...||.|+||+|+|-.++  |+..|||+|+.....    .            ..+++..|.+...+-
T Consensus        56 ~~~~~F~~~~Lqdlg~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~----k------------eq~rll~e~d~~mks  119 (361)
T KOG1006|consen   56 AHLHTFTSDNLQDLGEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIE----K------------EQKRLLMEHDTVMKS  119 (361)
T ss_pred             ccccccccchHHHHHHhcCCcchhhhhhhcCccCcEEEEEEeeeccch----H------------HHHHHHHHHHHHHhh
Confidence            3456777788999999999999999999998  899999999743321    1            223344455543322


Q ss_pred             cCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHH----hcCCCCHHH
Q psy4039         266 ENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRE----RCAQLSMHE  341 (588)
Q Consensus       266 ~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~----~~~~l~~~~  341 (588)
                         .+.||||++||.+..+                       |.     .|+.||.|+-||+.+-+.    +...++|..
T Consensus       120 ---~~cp~IVkfyGa~F~E-----------------------Gd-----cWiCMELMd~SlDklYk~vy~vq~~~ipE~I  168 (361)
T KOG1006|consen  120 ---SNCPNIVKFYGALFSE-----------------------GD-----CWICMELMDISLDKLYKRVYSVQKSRIPENI  168 (361)
T ss_pred             ---cCCcHHHHHhhhhhcC-----------------------Cc-----eeeeHHHHhhhHHHHHHHHHHHHhccCcHhh
Confidence               4899999999987753                       33     899999999888776542    234799999


Q ss_pred             HHHHHHHHHHHHHHHHh-CCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchh
Q psy4039         342 RVLLFTQLLEGVTHLNM-HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPE  420 (588)
Q Consensus       342 ~~~i~~ql~~gL~yLH~-~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE  420 (588)
                      .-.|....+.||.||-+ ..|||||+||+|||+|..     +.+||||||.|-.+....      ..+.-.|-..|||||
T Consensus       169 lg~ItvatV~AL~yLK~~lkiIHRDvKPSNILldr~-----G~vKLCDFGIcGqLv~Si------AkT~daGCrpYmAPE  237 (361)
T KOG1006|consen  169 LGHITVATVDALDYLKEELKIIHRDVKPSNILLDRH-----GDVKLCDFGICGQLVDSI------AKTVDAGCRPYMAPE  237 (361)
T ss_pred             hhheeeeehhHHHHHHHHhhhhhccCChhheEEecC-----CCEeeecccchHhHHHHH------HhhhccCCccccChh
Confidence            99999999999999997 599999999999999988     899999999997654321      122456888999999


Q ss_pred             HHhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccc----ccccccCCC-----CCCccHHHHHHHHHhhhh
Q psy4039         421 VALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD----YEVNALPQL-----NTNVPEVMRRLVAKLLEN  491 (588)
Q Consensus       421 ~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~----~~~~~~~~~-----~~~~~~~l~~Li~~~L~~  491 (588)
                      .+......    +.-+|||||+|++|||+.||..||..+.....    ......|.+     ...++..+..+|..||.+
T Consensus       238 Ri~p~~~g----yDiRSDvWSLGITL~EvAtG~fPyr~w~svfeql~~Vv~gdpp~l~~~~~~~~~s~~~~~fintCl~K  313 (361)
T KOG1006|consen  238 RIDPSDKG----YDIRSDVWSLGITLYEVATGNFPYRKWDSVFEQLCQVVIGDPPILLFDKECVHYSFSMVRFINTCLIK  313 (361)
T ss_pred             ccCCccCC----cchhhhhhhhcceEeeeecCCCCcchHHHHHHHHHHHHcCCCCeecCcccccccCHHHHHHHHHHhhc
Confidence            99755432    45689999999999999999999977532111    111111111     134678899999999999


Q ss_pred             CCCCCCCHHHHHHHHhhhhhcCCccccCC
Q psy4039         492 DPSDRPSAELAATVCQLYLWAPKHWLYGA  520 (588)
Q Consensus       492 dP~~Rps~~e~l~~L~~~~~~~h~w~~~~  520 (588)
                      |-.+||..++++.         +|+++..
T Consensus       314 d~~~Rpky~~Lk~---------~~fyr~y  333 (361)
T KOG1006|consen  314 DRSDRPKYDDLKK---------FPFYRMY  333 (361)
T ss_pred             ccccCcchhhhhc---------Cchhhhh
Confidence            9999999999988         9998833

>KOG0587|consensus

Probab=100.00  E-value=4e-34  Score=312.50  Aligned_cols=262  Identities=23%  Similarity=0.324  Sum_probs=209.1

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      +-|++.+.||+|.+|.||+++.+  ++..|||++....   +               ..+....|.+|++..   ..|||
T Consensus        19 d~~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~---d---------------~deEiE~eynil~~~---~~hpn   77 (953)
T KOG0587|consen   19 DIFEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTE---D---------------EEEEIELEYNMLKKY---SHHPN   77 (953)
T ss_pred             CccEEEEEEeeccceeEEEEeeeecCceeeeEeecCCc---c---------------ccHHHHHHHHHHHhc---cCCCC
Confidence            77899999999999999998886  8899999984311   1               222334466677665   68999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh-cCCCCHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER-CAQLSMHERVLLFTQLLE  351 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~-~~~l~~~~~~~i~~ql~~  351 (588)
                      ++.+||+|.-..+                       +..+.+|+||||| +||.-++++.. +..+.|..+.-|++.++.
T Consensus        78 v~~fyg~~~k~~~-----------------------~~~DqLWLVMEfC~gGSVTDLVKn~~g~rl~E~~IaYI~re~lr  134 (953)
T KOG0587|consen   78 VATFYGAFIKKDP-----------------------GNGDQLWLVMEFCGGGSVTDLVKNTKGNRLKEEWIAYILREILR  134 (953)
T ss_pred             cceEEEEEEEecC-----------------------CCCCeEEEEeeccCCccHHHHHhhhcccchhhHHHHHHHHHHHH
Confidence            9999999987542                       2234699999999 58999999864 558999999999999999


Q ss_pred             HHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccC
Q psy4039         352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF  431 (588)
Q Consensus       352 gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~  431 (588)
                      ||.|||.+.++|||||-.|||++.+     +.+||+|||.+.....+....     .+..|||.|||||++..... .+.
T Consensus       135 gl~HLH~nkviHRDikG~NiLLT~e-----~~VKLvDFGvSaQldsT~grR-----nT~iGtP~WMAPEViac~e~-~d~  203 (953)
T KOG0587|consen  135 GLAHLHNNKVIHRDIKGQNVLLTEN-----AEVKLVDFGVSAQLDSTVGRR-----NTFIGTPYWMAPEVIACDES-PDA  203 (953)
T ss_pred             HHHHHhhcceeeecccCceEEEecc-----CcEEEeeeeeeeeeecccccc-----cCcCCCcccccceeeecccC-CCC
Confidence            9999999999999999999999998     899999999998876643322     25789999999999976543 222


Q ss_pred             CCCCcCchhhHHHHHHHHhcCCCCCcccccccc-cccc--ccCCC--CCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHH
Q psy4039         432 VNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD-YEVN--ALPQL--NTNVPEVMRRLVAKLLENDPSDRPSAELAATVC  506 (588)
Q Consensus       432 ~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~-~~~~--~~~~~--~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L  506 (588)
                      .+...||+||+|++..||.-|.+|+.+...... +...  ..|.+  |..++.++.++|..||.+|-++||++.+++.  
T Consensus       204 tyd~R~D~WsLGITaIEladG~PPl~DmHPmraLF~IpRNPPPkLkrp~kWs~~FndFIs~cL~Kd~e~RP~~~~ll~--  281 (953)
T KOG0587|consen  204 TYDYRSDLWSLGITAIEMAEGAPPLCDMHPMRALFLIPRNPPPKLKRPKKWSKKFNDFISTCLVKDYEQRPSTEELLK--  281 (953)
T ss_pred             CcccccchhhccceeehhcCCCCCccCcchhhhhccCCCCCCccccchhhHHHHHHHHHHHHHhhccccCcchhhhcc--
Confidence            255679999999999999999999987533222 1111  11111  4567889999999999999999999999888  


Q ss_pred             hhhhhcCCccccCCC
Q psy4039         507 QLYLWAPKHWLYGAT  521 (588)
Q Consensus       507 ~~~~~~~h~w~~~~~  521 (588)
                             |||++...
T Consensus       282 -------hpFi~e~~  289 (953)
T KOG0587|consen  282 -------HPFITEQP  289 (953)
T ss_pred             -------CCcccccc
Confidence                   99998443

>KOG0200|consensus

Probab=100.00  E-value=4.9e-34  Score=321.00  Aligned_cols=257  Identities=23%  Similarity=0.320  Sum_probs=209.6

Q ss_pred             ccccccCCeEEeeeecccCceeEEEEEEC---------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHH
Q psy4039         190 VDDVKVDDIQIGKFIAKGTNAVVYEATFR---------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDM  260 (588)
Q Consensus       190 ~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~---------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~  260 (588)
                      .|++.-+++++.+.||+|.||.|++|...         ...||||+++.....                ...+.+..|++
T Consensus       290 ~~e~~~~~l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~----------------~~~~~~~~El~  353 (609)
T KOG0200|consen  290 KWEIPRENLKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASS----------------SEKKDLMSELN  353 (609)
T ss_pred             ceeechhhccccceeecccccceEeEEEeecccccccceEEEEEEecccccCc----------------HHHHHHHHHHH
Confidence            68888888899999999999999999875         357999998643222                13456677999


Q ss_pred             HHhhhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc-----
Q psy4039         261 LMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC-----  334 (588)
Q Consensus       261 il~~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~-----  334 (588)
                      +|+.+   ..|||||.++|+|....                            .+++|+||+ .|+|.+||+.++     
T Consensus       354 ~m~~~---g~H~niv~llG~~t~~~----------------------------~~~~v~Ey~~~G~L~~~Lr~~r~~~~~  402 (609)
T KOG0200|consen  354 VLKEL---GKHPNIVNLLGACTQDG----------------------------PLYVIVEYAEHGDLLEFLRKKRVTESI  402 (609)
T ss_pred             HHHHh---cCCcchhhheeeeccCC----------------------------ceEEEEEeccCCcHHHHHHhccccccc
Confidence            99998   78999999999998732                            299999999 699999999875     


Q ss_pred             ----------CCCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccc
Q psy4039         335 ----------AQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYS  404 (588)
Q Consensus       335 ----------~~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~  404 (588)
                                ..++..+.+.++.||+.|++||++.++|||||-++|||+..+     ..+||+|||+|+...........
T Consensus       403 ~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~~~~~vHRDLAaRNVLi~~~-----~~~kIaDFGlar~~~~~~~y~~~  477 (609)
T KOG0200|consen  403 DGSGVFPNERDALTTKDLLSFAYQIANGMEYLASVPCVHRDLAARNVLITKN-----KVIKIADFGLARDHYNKDYYRTK  477 (609)
T ss_pred             cccCCCccccCCcCHHHHHHHHHHHHHHHHHHhhCCccchhhhhhhEEecCC-----CEEEEccccceeccCCCCceEec
Confidence                      349999999999999999999999999999999999999988     79999999999965442221101


Q ss_pred             cccccccC--CccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCccccc----cccccccccCCCCCCc
Q psy4039         405 SADIELGG--NVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSAR----NTDYEVNALPQLNTNV  477 (588)
Q Consensus       405 ~~~~~~~G--T~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~----~~~~~~~~~~~~~~~~  477 (588)
                          ...|  ...|||||.+....      ++.|+|||||||+||||++ |..||.+-..    -.....+.+...|..|
T Consensus       478 ----~~~~~LP~kWmApEsl~~~~------ft~kSDVWSfGI~L~EifsLG~~PYp~~~~~~~l~~~l~~G~r~~~P~~c  547 (609)
T KOG0200|consen  478 ----SSAGTLPVKWMAPESLFDRV------FTSKSDVWSFGILLWEIFTLGGTPYPGIPPTEELLEFLKEGNRMEQPEHC  547 (609)
T ss_pred             ----CCCCccceeecCHHHhccCc------ccccchhhHHHHHHHHHhhCCCCCCCCCCcHHHHHHHHhcCCCCCCCCCC
Confidence                1112  33599999997644      6689999999999999998 7889876210    1123345566778899


Q ss_pred             cHHHHHHHHHhhhhCCCCCCCHHHHHHHHhh
Q psy4039         478 PEVMRRLVAKLLENDPSDRPSAELAATVCQL  508 (588)
Q Consensus       478 ~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~  508 (588)
                      ++++.++|+.||+.+|++||++.++.+.+..
T Consensus       548 ~~eiY~iM~~CW~~~p~~RP~F~~~~~~~~~  578 (609)
T KOG0200|consen  548 SDEIYDLMKSCWNADPEDRPTFSECVEFFEK  578 (609)
T ss_pred             CHHHHHHHHHHhCCCcccCCCHHHHHHHHHH
Confidence            9999999999999999999999999987775

>KOG1151|consensus

Probab=100.00  E-value=6.6e-35  Score=296.76  Aligned_cols=265  Identities=23%  Similarity=0.266  Sum_probs=205.0

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      -++|-+..+||+|||+.||+|.+.  .+.||||+-...   .+    ++...+|-   ..+-..+|..|.+.|    .||
T Consensus       462 n~RYLlLhLLGrGGFSEVyKAFDl~EqRYvAvKIHqlN---K~----WrdEKKeN---YhKHAcREyrIHKeL----DHp  527 (775)
T KOG1151|consen  462 NDRYLLLHLLGRGGFSEVYKAFDLTEQRYVAVKIHQLN---KN----WRDEKKEN---YHKHACREYRIHKEL----DHP  527 (775)
T ss_pred             HHHHHHHHHhccccHHHHHHhcccchhheeeEeeehhc---cc----hhhHhhhh---HHHHHHHHHhhhhcc----Ccc
Confidence            377999999999999999999987  788999985321   11    11112221   223446788888887    999


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCC-cHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNT-DLRNYLRERCAQLSMHERVLLFTQLLE  351 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~g-sL~~~L~~~~~~l~~~~~~~i~~ql~~  351 (588)
                      .||++|++|.-+                           +.+++-|+|||.| +|+-||+.+. -+++.++..|+.||+.
T Consensus       528 RIVKlYDyfslD---------------------------tdsFCTVLEYceGNDLDFYLKQhk-lmSEKEARSIiMQiVn  579 (775)
T KOG1151|consen  528 RIVKLYDYFSLD---------------------------TDSFCTVLEYCEGNDLDFYLKQHK-LMSEKEARSIIMQIVN  579 (775)
T ss_pred             eeeeeeeeeeec---------------------------cccceeeeeecCCCchhHHHHhhh-hhhHHHHHHHHHHHHH
Confidence            999999999753                           2358999999965 8999998774 7899999999999999


Q ss_pred             HHHHHHhC--CceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCc-----cccccccccccCCccccchhHHhc
Q psy4039         352 GVTHLNMH--RTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLS-----MQYSSADIELGGNVALMAPEVALA  424 (588)
Q Consensus       352 gL~yLH~~--~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~-----~~~~~~~~~~~GT~~Y~APE~l~~  424 (588)
                      ||.||.+.  .|||-||||.|||+.+.  ..|+.+||+|||+++..+....     +..++   ...||.+|++||.+.-
T Consensus       580 AL~YLNEikpPIIHYDLKPgNILLv~G--tacGeIKITDFGLSKIMdddSy~~vdGmeLTS---QgAGTYWYLPPEcFvV  654 (775)
T KOG1151|consen  580 ALKYLNEIKPPIIHYDLKPGNILLVNG--TACGEIKITDFGLSKIMDDDSYNSVDGMELTS---QGAGTYWYLPPECFVV  654 (775)
T ss_pred             HHHHHhccCCCeeeeccCCccEEEecC--cccceeEeeecchhhhccCCccCcccceeeec---ccCceeeecCcceeec
Confidence            99999975  89999999999999865  4569999999999998655322     22222   4679999999998864


Q ss_pred             CCCCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccccc---------ccccCCCCCCccHHHHHHHHHhhhhCCCC
Q psy4039         425 TPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE---------VNALPQLNTNVPEVMRRLVAKLLENDPSD  495 (588)
Q Consensus       425 ~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~---------~~~~~~~~~~~~~~l~~Li~~~L~~dP~~  495 (588)
                      ...+.  ..+.|+||||+|||+|.++.|+.||.......++.         ....| ..+.++.+++++|++||+..-++
T Consensus       655 gkePP--KIsnKVDVWSvGVIFyQClYGrKPFGhnqsQQdILqeNTIlkAtEVqFP-~KPvVsseAkaFIRRCLaYRKeD  731 (775)
T KOG1151|consen  655 GKEPP--KISNKVDVWSVGVIFYQCLYGRKPFGHNQSQQDILQENTILKATEVQFP-PKPVVSSEAKAFIRRCLAYRKED  731 (775)
T ss_pred             CCCCC--ccccceeeEeeehhhhhhhccCCCCCCchhHHHHHhhhchhcceeccCC-CCCccCHHHHHHHHHHHHhhhhh
Confidence            42211  14578999999999999999999998753322211         11222 23468899999999999999999


Q ss_pred             CCCHHHHHHHHhhhhhcCCcccc
Q psy4039         496 RPSAELAATVCQLYLWAPKHWLY  518 (588)
Q Consensus       496 Rps~~e~l~~L~~~~~~~h~w~~  518 (588)
                      |....++..         ||++.
T Consensus       732 R~DV~qLA~---------dpyll  745 (775)
T KOG1151|consen  732 RIDVQQLAC---------DPYLL  745 (775)
T ss_pred             hhhHHHHcc---------Ccccc
Confidence            999999888         88875

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=100.00  E-value=3.7e-33  Score=304.64  Aligned_cols=285  Identities=17%  Similarity=0.165  Sum_probs=192.8

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEE------------------CCeeEEEEEEecCCCCcchHHHHHHHhhhhcc--c
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATF------------------RGVEYALKMMFNYSAASNSHAILKAMSKELLP--L  250 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~------------------~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~--~  250 (588)
                      ..+..++|++.++||+|+||+||+|.+                  .++.||||.+....     ......|.++...  .
T Consensus       140 ~r~~~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~-----~~~~~~fl~e~~~~~~  214 (507)
T PLN03224        140 SRWSSDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDR-----QGVRQDFLKTGTLAKG  214 (507)
T ss_pred             CCccccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccc-----hhhHHHHHhhhhhhhc
Confidence            345678999999999999999999975                  15679999984321     1122333333211  1


Q ss_pred             ccchhhhHHHHHhhhcCC-CCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHH
Q psy4039         251 RKPLRLNEDMLMNSVENL-PPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRN  328 (588)
Q Consensus       251 ~~~~~~~Ei~il~~l~~l-~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~  328 (588)
                      ..+....|+.++.++.+. ..|+++++++++|.....                    .|.......++||||+ +++|.+
T Consensus       215 ~~e~~~vE~~~l~~l~~~~l~~~~~~~~lg~~~~~~~--------------------~g~~~~~~~~LV~Ey~~~gsL~~  274 (507)
T PLN03224        215 SAETGMVEAYMCAKIKRNPIAAASCAEYLGYFTSNTA--------------------DGAFTKGSQWLVWKFESDATLGD  274 (507)
T ss_pred             ccchhHHHHHHHHHhhcccchhhhhhhhhhhcccccc--------------------cccccCCceEEEEEcCCCCcHHH
Confidence            233445577777766211 123344677777764211                    0222334589999999 689999


Q ss_pred             HHHHhc-----------------------CCCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCcee
Q psy4039         329 YLRERC-----------------------AQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLV  385 (588)
Q Consensus       329 ~L~~~~-----------------------~~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vk  385 (588)
                      +++...                       ..+++..+..++.|++.||.|||+++|+||||||+|||++.+     +.+|
T Consensus       275 ~L~~~~~~~~~~L~e~l~~g~~l~~~~~~~~~~~~~~~~i~~ql~~aL~~lH~~~ivHrDLKp~NILl~~~-----~~~k  349 (507)
T PLN03224        275 ALDGKLGPFPGCLEEFMMAGKKIPDNMPQDKRDINVIKGVMRQVLTGLRKLHRIGIVHRDIKPENLLVTVD-----GQVK  349 (507)
T ss_pred             HHhhccCCCcchHHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCchHhEEECCC-----CcEE
Confidence            987421                       134677889999999999999999999999999999999987     7899


Q ss_pred             eeccccccccCCCCccccccccccccCCccccchhHHhcCCCCc----------------cCCCCCcCchhhHHHHHHHH
Q psy4039         386 ITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF----------------SFVNYSKSDAWTAGTVAYEI  449 (588)
Q Consensus       386 L~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~----------------~~~~~~ksDVwS~Gvil~El  449 (588)
                      |+|||+++....+....    .....+|+.|+|||.+.......                ......+.||||+||++|+|
T Consensus       350 L~DFGla~~~~~~~~~~----~~~g~~tp~Y~aPE~l~~~~~~~~~~~~~~~~~l~~~~~~yg~~~~~DvwSlGvil~em  425 (507)
T PLN03224        350 IIDFGAAVDMCTGINFN----PLYGMLDPRYSPPEELVMPQSCPRAPAPAMAALLSPFAWLYGRPDLFDSYTAGVLLMQM  425 (507)
T ss_pred             EEeCcCccccccCCccC----ccccCCCcceeChhhhcCCCCCCccchhhhhhhhhhhHHhcCCCCccchhhHHHHHHHH
Confidence            99999997654322111    11233588999999986432100                00012357999999999999


Q ss_pred             hcCCC-CCccc------ccccc-----c---c-ccccCCCCCCccHHHHHHHHHhhhhCC---CCCCCHHHHHHHHhhhh
Q psy4039         450 FGHDN-PFYQS------ARNTD-----Y---E-VNALPQLNTNVPEVMRRLVAKLLENDP---SDRPSAELAATVCQLYL  510 (588)
Q Consensus       450 ltG~~-Pf~~~------~~~~~-----~---~-~~~~~~~~~~~~~~l~~Li~~~L~~dP---~~Rps~~e~l~~L~~~~  510 (588)
                      ++|.. ||.+.      .....     +   . ........+.+++..+||+.+||..+|   .+|+|++|+++      
T Consensus       426 ~~~~l~p~~~~~~f~~~~~~~~~~~~~~r~~~~~~~~~~~~d~~s~~~~dLi~~LL~~~~~~~~~RlSa~eaL~------  499 (507)
T PLN03224        426 CVPELRPVANIRLFNTELRQYDNDLNRWRMYKGQKYDFSLLDRNKEAGWDLACKLITKRDQANRGRLSVGQALS------  499 (507)
T ss_pred             HhCCCCCccchhhhhhHHhhccchHHHHHhhcccCCCcccccccChHHHHHHHHHhccCCCCcccCCCHHHHhC------
Confidence            99875 66431      00000     0   0 011112345678999999999999766   68999999999      


Q ss_pred             hcCCcccc
Q psy4039         511 WAPKHWLY  518 (588)
Q Consensus       511 ~~~h~w~~  518 (588)
                         ||||.
T Consensus       500 ---Hp~f~  504 (507)
T PLN03224        500 ---HRFFL  504 (507)
T ss_pred             ---CCCcC
Confidence               99995

>KOG0671|consensus

Probab=100.00  E-value=4.4e-34  Score=288.04  Aligned_cols=259  Identities=23%  Similarity=0.285  Sum_probs=195.6

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCC-C-
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLP-P-  270 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~-~-  270 (588)
                      .++|.+...+|+|.||.|-.|.+.  +..||||+|++             ..+     -++...-|+.+++++..-- . 
T Consensus        88 ~~Ry~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~-------------V~k-----YreAa~iEi~vLqki~~~DP~g  149 (415)
T KOG0671|consen   88 TNRYEIVDLLGEGTFGKVVECWDRETKEHVALKIIKN-------------VDK-----YREAALIEIEVLQKINESDPNG  149 (415)
T ss_pred             ccceehhhhhcCCcccceEEEeecCCCceehHHHHHH-------------HHH-----HhhHHHHHHHHHHHHHhcCCCC
Confidence            488999999999999999999987  67999999843             111     2233445899999883211 1 


Q ss_pred             CCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHh-cCCCCHHHHHHHHHHH
Q psy4039         271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRER-CAQLSMHERVLLFTQL  349 (588)
Q Consensus       271 HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~-~~~l~~~~~~~i~~ql  349 (588)
                      ---+|++.+||.-                            .++.++|+|.++-|+.++|..+ -.+++..++..+++|+
T Consensus       150 ~~rcv~m~~wFdy----------------------------rghiCivfellG~S~~dFlk~N~y~~fpi~~ir~m~~QL  201 (415)
T KOG0671|consen  150 KFRCVQMRDWFDY----------------------------RGHICIVFELLGLSTFDFLKENNYIPFPIDHIRHMGYQL  201 (415)
T ss_pred             ceEEEeeehhhhc----------------------------cCceEEEEeccChhHHHHhccCCccccchHHHHHHHHHH
Confidence            1146778777754                            2359999999999999999975 3478999999999999


Q ss_pred             HHHHHHHHhCCceeccCCCCcEEEcCCC---------------CCCCCceeeeccccccccCCCCccccccccccccCCc
Q psy4039         350 LEGVTHLNMHRTAHRDLKSDNILLDCSE---------------DNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNV  414 (588)
Q Consensus       350 ~~gL~yLH~~~IvHrDLKp~NILld~~~---------------~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~  414 (588)
                      +++++|||+.+++|-||||+|||+.+..               ......++|+|||.|.......        ...+.|.
T Consensus       202 ~~sv~fLh~~kl~HTDLKPENILfvss~~~~~~~~k~~~~~~r~~ks~~I~vIDFGsAtf~~e~h--------s~iVsTR  273 (415)
T KOG0671|consen  202 LESVAFLHDLKLTHTDLKPENILFVSSEYFKTYNPKKKVCFIRPLKSTAIKVIDFGSATFDHEHH--------STIVSTR  273 (415)
T ss_pred             HHHHHHHHhcceeecCCChheEEEeccceEEEeccCCccceeccCCCcceEEEecCCcceeccCc--------ceeeecc
Confidence            9999999999999999999999986543               1113578999999998755432        2567899


Q ss_pred             cccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccc--------------------cc---cc-c--cc
Q psy4039         415 ALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSAR--------------------NT---DY-E--VN  468 (588)
Q Consensus       415 ~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~--------------------~~---~~-~--~~  468 (588)
                      .|.|||++.+.+      ++.+|||||+||||+|+.+|...|+....                    ..   .+ .  ..
T Consensus       274 HYRAPEViLgLG------wS~pCDvWSiGCIL~ElytG~~LFqtHen~EHLaMMerIlGp~P~~mi~r~~~~Kyf~~~rl  347 (415)
T KOG0671|consen  274 HYRAPEVILGLG------WSQPCDVWSIGCILVELYTGETLFQTHENLEHLAMMERILGPIPSRMIKKTRKEKYFRRGRL  347 (415)
T ss_pred             ccCCchheeccC------cCCccCceeeeeEEEEeeccceecccCCcHHHHHHHHHhhCCCcHHHhhhhhhHhhhhcccc
Confidence            999999999887      55789999999999999999999876210                    00   00 0  00


Q ss_pred             ccCC--------------CC-----CCc---cHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccCCCC
Q psy4039         469 ALPQ--------------LN-----TNV---PEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGATP  522 (588)
Q Consensus       469 ~~~~--------------~~-----~~~---~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~~~  522 (588)
                      .+++              .+     ...   -.++.||+++||..||.+|+|+.||+.         ||||+...+
T Consensus       348 dw~e~~~~~~~k~v~~~ckpl~~~~~~~d~e~~~LfDLl~~mL~fDP~~RiTl~EAL~---------HpFF~~~~~  414 (415)
T KOG0671|consen  348 DWPEVSSKGKSKYVFEPCKPLKKYMLQDDLEHVQLFDLLRRMLEFDPARRITLREALS---------HPFFARLTP  414 (415)
T ss_pred             cCccccccccchhhhcCCccHHHHhccCcHHHhHHHHHHHHHHccCccccccHHHHhc---------CHHhhcCCC
Confidence            0000              00     000   124789999999999999999999999         999975543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=7.1e-33  Score=329.46  Aligned_cols=236  Identities=17%  Similarity=0.209  Sum_probs=178.5

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ..+...+.||+|+||.||+|.+.  +..||||.+....                     .....|+.+++++    +|||
T Consensus       690 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~---------------------~~~~~~~~~l~~l----~Hpn  744 (968)
T PLN00113        690 SSLKEENVISRGKKGASYKGKSIKNGMQFVVKEINDVN---------------------SIPSSEIADMGKL----QHPN  744 (968)
T ss_pred             hhCCcccEEccCCCeeEEEEEECCCCcEEEEEEccCCc---------------------cccHHHHHHHhhC----CCCC
Confidence            45667789999999999999975  8899999984211                     1112357777776    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      ||+++++|.+..                            ..|+||||+ +|+|.++++    .++|.++..|+.|+++|
T Consensus       745 Iv~~~~~~~~~~----------------------------~~~lv~Ey~~~g~L~~~l~----~l~~~~~~~i~~~ia~~  792 (968)
T PLN00113        745 IVKLIGLCRSEK----------------------------GAYLIHEYIEGKNLSEVLR----NLSWERRRKIAIGIAKA  792 (968)
T ss_pred             cceEEEEEEcCC----------------------------CCEEEEeCCCCCcHHHHHh----cCCHHHHHHHHHHHHHH
Confidence            999999998632                            279999999 689999995    58999999999999999


Q ss_pred             HHHHH---hCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCc
Q psy4039         353 VTHLN---MHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF  429 (588)
Q Consensus       353 L~yLH---~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~  429 (588)
                      |+|||   +.+|+||||||+||+++.+     ...++. ||.+......         ....||+.|||||++.+..   
T Consensus       793 L~yLH~~~~~~iiH~dlkp~Nil~~~~-----~~~~~~-~~~~~~~~~~---------~~~~~t~~y~aPE~~~~~~---  854 (968)
T PLN00113        793 LRFLHCRCSPAVVVGNLSPEKIIIDGK-----DEPHLR-LSLPGLLCTD---------TKCFISSAYVAPETRETKD---  854 (968)
T ss_pred             HHHhccCCCCCeecCCCCHHhEEECCC-----CceEEE-eccccccccC---------CCccccccccCcccccCCC---
Confidence            99999   6699999999999999977     455554 6654332111         1236889999999987654   


Q ss_pred             cCCCCCcCchhhHHHHHHHHhcCCCCCcccccccc--------------ccccccCCC------CCCccHHHHHHHHHhh
Q psy4039         430 SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD--------------YEVNALPQL------NTNVPEVMRRLVAKLL  489 (588)
Q Consensus       430 ~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~--------------~~~~~~~~~------~~~~~~~l~~Li~~~L  489 (588)
                         ++.++|||||||++|||++|+.||........              ......+.+      +.....++.+++.+||
T Consensus       855 ---~~~~sDv~S~Gvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl  931 (968)
T PLN00113        855 ---ITEKSDIYGFGLILIELLTGKSPADAEFGVHGSIVEWARYCYSDCHLDMWIDPSIRGDVSVNQNEIVEVMNLALHCT  931 (968)
T ss_pred             ---CCcccchhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHhcCccchhheeCccccCCCCccHHHHHHHHHHHHhhC
Confidence               55789999999999999999999854211100              000001111      1112335778999999


Q ss_pred             hhCCCCCCCHHHHHHHHhhh
Q psy4039         490 ENDPSDRPSAELAATVCQLY  509 (588)
Q Consensus       490 ~~dP~~Rps~~e~l~~L~~~  509 (588)
                      +.||++|||++++++.|+..
T Consensus       932 ~~~P~~RPt~~evl~~L~~~  951 (968)
T PLN00113        932 ATDPTARPCANDVLKTLESA  951 (968)
T ss_pred             cCCchhCcCHHHHHHHHHHh
Confidence            99999999999999987754

>KOG1025|consensus

Probab=100.00  E-value=1.8e-33  Score=303.98  Aligned_cols=259  Identities=20%  Similarity=0.270  Sum_probs=210.7

Q ss_pred             CeEEeeeecccCceeEEEEEEC------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCC
Q psy4039         197 DIQIGKFIAKGTNAVVYEATFR------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPP  270 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~~~------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~  270 (588)
                      .++..++||+|+||+||+|.|-      .-+||||++......                .....+.+|+-+|..+    +
T Consensus       697 elkk~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~----------------~~s~e~LdeAl~masl----d  756 (1177)
T KOG1025|consen  697 ELKKDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSP----------------KASIELLDEALRMASL----D  756 (1177)
T ss_pred             hhhhhceeccccceeEEeeeEecCCceecceeEEEEeeccCCc----------------hhhHHHHHHHHHHhcC----C
Confidence            3455779999999999999996      568999998532222                1344566788888887    9


Q ss_pred             CCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4039         271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQL  349 (588)
Q Consensus       271 HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql  349 (588)
                      |||+++|+++|...                             .+.||++|+ .|+|.+|++.++..+-....+.|..||
T Consensus       757 Hpnl~RLLgvc~~s-----------------------------~~qlvtq~mP~G~LlDyvr~hr~~igsq~lLnw~~QI  807 (1177)
T KOG1025|consen  757 HPNLLRLLGVCMLS-----------------------------TLQLVTQLMPLGCLLDYVREHRDNIGSQDLLNWCYQI  807 (1177)
T ss_pred             CchHHHHhhhcccc-----------------------------hHHHHHHhcccchHHHHHHHhhccccHHHHHHHHHHH
Confidence            99999999998763                             277899999 599999999987799999999999999


Q ss_pred             HHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCc
Q psy4039         350 LEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF  429 (588)
Q Consensus       350 ~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~  429 (588)
                      ++||.|||++++|||||-.+|||+.+-     ..+||+|||+|+.+..... .++..  ...-.+.|||=|.+....   
T Consensus       808 AkgM~YLe~qrlVHrdLaaRNVLVksP-----~hvkitdfgla~ll~~d~~-ey~~~--~gK~pikwmale~i~~~~---  876 (1177)
T KOG1025|consen  808 AKGMKYLEEQRLVHRDLAARNVLVKSP-----NHVKITDFGLAKLLAPDEK-EYSAP--GGKVPIKWMALESIRIRK---  876 (1177)
T ss_pred             HHHHHHHHhcchhhhhhhhhheeecCC-----CeEEEEecchhhccCcccc-ccccc--ccccCcHHHHHHHhhccC---
Confidence            999999999999999999999999876     7999999999998766322 12211  112355789999887665   


Q ss_pred             cCCCCCcCchhhHHHHHHHHhc-CCCCCcccccc---ccccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHH
Q psy4039         430 SFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARN---TDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATV  505 (588)
Q Consensus       430 ~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~---~~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~  505 (588)
                         ++.++|||||||++||++| |..|+.+....   ..++...+-+-|+.++-++.-+|.+||..|+..||+++++.+.
T Consensus       877 ---~thqSDVWsfGVtiWElmTFGa~Py~gi~~~eI~dlle~geRLsqPpiCtiDVy~~mvkCwmid~~~rp~fkel~~~  953 (1177)
T KOG1025|consen  877 ---YTHQSDVWSFGVTIWELMTFGAKPYDGIPAEEIPDLLEKGERLSQPPICTIDVYMVMVKCWMIDADSRPTFKELAEE  953 (1177)
T ss_pred             ---CCchhhhhhhhhhHHHHHhcCCCccCCCCHHHhhHHHhccccCCCCCCccHHHHHHHHHHhccCcccCccHHHHHHH
Confidence               5678999999999999998 88999874222   2233444455678899999999999999999999999999999


Q ss_pred             HhhhhhcCCcccc
Q psy4039         506 CQLYLWAPKHWLY  518 (588)
Q Consensus       506 L~~~~~~~h~w~~  518 (588)
                      ...+...|+-++.
T Consensus       954 fs~~ardpqryl~  966 (1177)
T KOG1025|consen  954 FSRMARDPQRYLV  966 (1177)
T ss_pred             HHHHhcCcceEee
Confidence            8888888888775

>KOG0695|consensus

Probab=100.00  E-value=2.2e-33  Score=277.38  Aligned_cols=248  Identities=20%  Similarity=0.302  Sum_probs=196.4

Q ss_pred             CCccccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhh
Q psy4039         188 PDVDDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSV  265 (588)
Q Consensus       188 ~~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l  265 (588)
                      ...|.+.+++|.+..+||+|+|++|..++++  .+.||+|++++.-.            .+-.  ...-...|..+....
T Consensus       242 ~~~~~l~l~df~ll~vigrgsyakvl~~~~~~t~qiyamkvvkkel~------------ndde--didwvqtek~vfe~a  307 (593)
T KOG0695|consen  242 KISQGLGLQDFDLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELV------------NDDE--DIDWVQTEKHVFEQA  307 (593)
T ss_pred             ccccccccccceeeeeecCcchhhhhheehcccceeeehhhHHHHhc------------CCcc--cchhHHhhHHHHHhc
Confidence            4667888999999999999999999999987  78899999854221            1111  111123455555544


Q ss_pred             cCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHH
Q psy4039         266 ENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVL  344 (588)
Q Consensus       266 ~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~  344 (588)
                         .+||.+|-++.+|+...                            .+|.|.||. +|+|--.+..++ +++++.+..
T Consensus       308 ---sn~pflvglhscfqtes----------------------------rlffvieyv~ggdlmfhmqrqr-klpeeharf  355 (593)
T KOG0695|consen  308 ---SNNPFLVGLHSCFQTES----------------------------RLFFVIEYVNGGDLMFHMQRQR-KLPEEHARF  355 (593)
T ss_pred             ---cCCCeEEehhhhhcccc----------------------------eEEEEEEEecCcceeeehhhhh-cCcHHHhhh
Confidence               68999999999998753                            399999999 578877776654 899999999


Q ss_pred             HHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeecccccccc-CCCCccccccccccccCCccccchhHHh
Q psy4039         345 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTN-KSGLSMQYSSADIELGGNVALMAPEVAL  423 (588)
Q Consensus       345 i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~-~~~~~~~~~~~~~~~~GT~~Y~APE~l~  423 (588)
                      +...|+-||.|||++|||.||||.+|||+|..     +.+||+|+|+|+.- ..+.      .+.++||||.|+|||++.
T Consensus       356 ys~ei~lal~flh~rgiiyrdlkldnvlldae-----ghikltdygmcke~l~~gd------~tstfcgtpnyiapeilr  424 (593)
T KOG0695|consen  356 YSAEICLALNFLHERGIIYRDLKLDNVLLDAE-----GHIKLTDYGMCKEGLGPGD------TTSTFCGTPNYIAPEILR  424 (593)
T ss_pred             hhHHHHHHHHHHhhcCeeeeeccccceEEccC-----CceeecccchhhcCCCCCc------ccccccCCCcccchhhhc
Confidence            99999999999999999999999999999998     99999999999763 2221      123799999999999999


Q ss_pred             cCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCccc-ccc-----ccc----cccccCCCCCCccHHHHHHHHHhhhhCC
Q psy4039         424 ATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQS-ARN-----TDY----EVNALPQLNTNVPEVMRRLVAKLLENDP  493 (588)
Q Consensus       424 ~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~-~~~-----~~~----~~~~~~~~~~~~~~~l~~Li~~~L~~dP  493 (588)
                      +..+.      ..+|+|++||+++||+.|+.||.-- ..+     .+|    .......+|..++-.+..+++..|++||
T Consensus       425 geeyg------fsvdwwalgvlmfemmagrspfdivgm~n~d~ntedylfqvilekqiriprslsvkas~vlkgflnkdp  498 (593)
T KOG0695|consen  425 GEEYG------FSVDWWALGVLMFEMMAGRSPFDIVGMDNPDMNTEDYLFQVILEKQIRIPRSLSVKASHVLKGFLNKDP  498 (593)
T ss_pred             ccccC------ceehHHHHHHHHHHHHcCCCCcceecCCCcccchhHHHHHHHhhhcccccceeehhhHHHHHHhhcCCc
Confidence            98844      5599999999999999999999641 111     111    1233345677888888999999999999


Q ss_pred             CCCCC
Q psy4039         494 SDRPS  498 (588)
Q Consensus       494 ~~Rps  498 (588)
                      .+|..
T Consensus       499 ~erlg  503 (593)
T KOG0695|consen  499 KERLG  503 (593)
T ss_pred             HHhcC
Confidence            99964

>KOG0665|consensus

Probab=99.98  E-value=1e-32  Score=272.34  Aligned_cols=252  Identities=23%  Similarity=0.279  Sum_probs=195.9

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      .+|.-...+|.|.- .|..+.+.  +++||+|.+...  ..+             ....+...+|..+|..+    .|+|
T Consensus        17 ~Ry~nL~p~~~g~~-~v~~a~D~v~~~~v~ikk~~~p--f~n-------------~~~akra~rel~l~~~v----~~~n   76 (369)
T KOG0665|consen   17 KRYVNLKPIGSGAQ-IVVAAFDQVLGRPVAIKKLSRP--FQN-------------QTHAKRAYRELKLMKCV----NHKN   76 (369)
T ss_pred             eeeeeecccCCCCc-eEEecchhhccCceehhhhcCc--ccc-------------Cccchhhhhhhhhhhhh----cccc
Confidence            67888899999998 77777765  899999997321  111             22344556799999887    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      ||+++.+|+...                      ....-..+|+|||++..+|.+.+..   .++-+....|+.|++.|+
T Consensus        77 ii~l~n~ftP~~----------------------~l~~~~e~y~v~e~m~~nl~~vi~~---elDH~tis~i~yq~~~~i  131 (369)
T KOG0665|consen   77 IISLLNVFTPQK----------------------TLEEFQEVYLVMELMDANLCQVILM---ELDHETISYILYQMLCGI  131 (369)
T ss_pred             eeeeeeccCccc----------------------cHHHHHhHHHHHHhhhhHHHHHHHH---hcchHHHHHHHHHHHHHH
Confidence            999999998643                      1122335999999999999999884   688899999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN  433 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~  433 (588)
                      .|||+.||+||||||+||++..+     ..+||.|||+|+......      ..+..+.|..|.|||++.+..      +
T Consensus       132 k~lhs~~IihRdLkPsnivv~~~-----~~lKi~dfg~ar~e~~~~------~mtpyVvtRyyrapevil~~~------~  194 (369)
T KOG0665|consen  132 KHLHSAGIIHRDLKPSNIVVNSD-----CTLKILDFGLARTEDTDF------MMTPYVVTRYYRAPEVILGMG------Y  194 (369)
T ss_pred             HHHHhcceeecccCcccceecch-----hheeeccchhhcccCccc------ccCchhheeeccCchheeccC------C
Confidence            99999999999999999999988     899999999998765431      123577899999999998765      4


Q ss_pred             CCcCchhhHHHHHHHHhcCCCCCcccccccc--------------------------------ccc---------cccC-
Q psy4039         434 YSKSDAWTAGTVAYEIFGHDNPFYQSARNTD--------------------------------YEV---------NALP-  471 (588)
Q Consensus       434 ~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~--------------------------------~~~---------~~~~-  471 (588)
                      .+.+||||+||++.||++|..-|.+......                                +..         ...+ 
T Consensus       195 ke~vdiwSvGci~gEli~~~Vlf~g~d~idQ~~ki~~~lgtpd~~F~~qL~~~~r~yv~~~~~y~~~~f~~~fpD~~f~~  274 (369)
T KOG0665|consen  195 KENVDIWSVGCIMGELILGTVLFPGKDHIDQWNKIIEQLGTPDPSFMKQLQPTVRNYVENRPQYQAISFSELFPDSLFPV  274 (369)
T ss_pred             cccchhhhhhhHHHHHhhceEEecCchHHHHHHHHHHHhcCCCHHHHHHhhHHHHHHhhcChHhhccchhhhCCcccccc
Confidence            5779999999999999999998876210000                                000         0000 


Q ss_pred             --CCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCcccc
Q psy4039         472 --QLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLY  518 (588)
Q Consensus       472 --~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~  518 (588)
                        +.+..-+..+++|+.+||..||++|.|++++|.         ||+++
T Consensus       275 ~~e~~~~~~~~ardll~~MLvi~pe~Risv~daL~---------HPY~~  314 (369)
T KOG0665|consen  275 VLEGSKLDCSLARDLLSKMLVIDPEKRISVDDALR---------HPYIK  314 (369)
T ss_pred             cccCCccchHHHHHHHHHhhccChhhcccHHHHhc---------CCeee
Confidence              000112345899999999999999999999999         99886

>KOG0668|consensus

Probab=99.98  E-value=1e-32  Score=260.64  Aligned_cols=253  Identities=18%  Similarity=0.225  Sum_probs=195.3

Q ss_pred             CccccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhc
Q psy4039         189 DVDDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVE  266 (588)
Q Consensus       189 ~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~  266 (588)
                      ..|. ..++|++.+++|+|.|+.||.|...  +..++||++++                    .+++.+.+|+.||+.| 
T Consensus        32 i~wg-~~ddYeivrk~GRGKYSEVFeg~~~~~~eK~ViKiLKP--------------------VkkkKIkREikIL~nL-   89 (338)
T KOG0668|consen   32 IDWG-NQDDYEIVRKVGRGKYSEVFEGINITNNEKCVIKILKP--------------------VKKKKIKREIKILQNL-   89 (338)
T ss_pred             eecc-ccchHHHHHHHcCccHhhHhcccccCCCceEEEeeech--------------------HHHHHHHHHHHHHHhc-
Confidence            3444 4489999999999999999999864  78999999842                    3556788999999988 


Q ss_pred             CCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHH
Q psy4039         267 NLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLF  346 (588)
Q Consensus       267 ~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~  346 (588)
                        ..|||||+|+++..|+.                          .....+++|+.+..=...|..   .|+...+..++
T Consensus        90 --~gg~NIi~L~DiV~Dp~--------------------------SktpaLiFE~v~n~Dfk~ly~---tl~d~dIryY~  138 (338)
T KOG0668|consen   90 --RGGPNIIKLLDIVKDPE--------------------------SKTPSLIFEYVNNTDFKQLYP---TLTDYDIRYYI  138 (338)
T ss_pred             --cCCCCeeehhhhhcCcc--------------------------ccCchhHhhhhccccHHHHhh---hhchhhHHHHH
Confidence              57999999999988743                          123678899995432333332   68888999999


Q ss_pred             HHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCC
Q psy4039         347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP  426 (588)
Q Consensus       347 ~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~  426 (588)
                      .++++||.|+|++||.|||+||.|++||...    -.++|+|+|+|-....+....      ..+.+..|--||++..-.
T Consensus       139 ~elLkALdyCHS~GImHRDVKPhNvmIdh~~----rkLrlIDWGLAEFYHp~~eYn------VRVASRyfKGPELLVdy~  208 (338)
T KOG0668|consen  139 YELLKALDYCHSMGIMHRDVKPHNVMIDHEL----RKLRLIDWGLAEFYHPGKEYN------VRVASRYFKGPELLVDYQ  208 (338)
T ss_pred             HHHHHHHhHHHhcCcccccCCcceeeechhh----ceeeeeecchHhhcCCCceee------eeeehhhcCCchheeech
Confidence            9999999999999999999999999999763    579999999998876654432      345677899999986543


Q ss_pred             CCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccc--------------------cccccc----------------
Q psy4039         427 GLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD--------------------YEVNAL----------------  470 (588)
Q Consensus       427 ~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~--------------------~~~~~~----------------  470 (588)
                      .     +.-.-|+|||||++..|+..+.||.....+.+                    +.....                
T Consensus       209 ~-----YDYSLD~WS~GcmlA~miFrkepFFhG~dN~DQLVkIakVLGt~el~~Yl~KY~i~Ldp~~~~i~~~~~rk~w~  283 (338)
T KOG0668|consen  209 M-----YDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVKIAKVLGTDELYAYLNKYQIDLDPQFEDILGRHSRKPWS  283 (338)
T ss_pred             h-----ccccHHHHHHHHHHHHHHhccCcccCCCCCHHHHHHHHHHhChHHHHHHHHHHccCCChhHhhHhhccccccHH
Confidence            1     22346999999999999999999865211100                    000000                


Q ss_pred             ----CCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCcccc
Q psy4039         471 ----PQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLY  518 (588)
Q Consensus       471 ----~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~  518 (588)
                          ++...-+++++.||+.++|..|-.+|+|+.|++.         ||||.
T Consensus       284 ~Fi~~~n~hl~~peaiDlldklLrYDHqeRlTakEam~---------HpyF~  326 (338)
T KOG0668|consen  284 RFINSENQHLVSPEAIDLLDKLLRYDHQERLTAKEAMA---------HPYFA  326 (338)
T ss_pred             HhCCccccccCChHHHHHHHHHHhhccccccchHHHhc---------CchHH
Confidence                0111235689999999999999999999999999         99986

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.97  E-value=3.4e-31  Score=260.94  Aligned_cols=235  Identities=28%  Similarity=0.380  Sum_probs=185.4

Q ss_pred             CceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEEeeeeeccC
Q psy4039         208 TNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFV  285 (588)
Q Consensus       208 ~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l~~~~~~~~  285 (588)
                      +||.||+|.+.  +..+|+|++.......                ..+.+.+|+..++.+    +|+||+++++++... 
T Consensus         1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~----------------~~~~~~~e~~~~~~l----~~~~i~~~~~~~~~~-   59 (244)
T smart00220        1 SFGKVYLARDKKTGKLVAIKVIKKEKIKK----------------KRERILREISILKKL----KHPNIVRLYDVFEDE-   59 (244)
T ss_pred             CceEEEEEEECCCCcEEEEEEeccccccc----------------HHHHHHHHHHHHHhC----CCCcHHHHHhheeeC-
Confidence            58999999997  5899999985322110                034566788888887    999999999988752 


Q ss_pred             CCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCC-CcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCceec
Q psy4039         286 PSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYN-TDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHR  364 (588)
Q Consensus       286 ~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~-gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yLH~~~IvHr  364 (588)
                                                 ...+++||+++ ++|.+++.... .+++..+..++.+++.++.|||+.+|+|+
T Consensus        60 ---------------------------~~~~l~~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~l~~~l~~lh~~~i~h~  111 (244)
T smart00220       60 ---------------------------DKLYLVMEYCDGGDLFDLLKKRG-RLSEDEARFYARQILSALEYLHSNGIIHR  111 (244)
T ss_pred             ---------------------------CEEEEEEeCCCCCCHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHHHHcCeecC
Confidence                                       14899999995 59999998764 48999999999999999999999999999


Q ss_pred             cCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCCcCchhhHHH
Q psy4039         365 DLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGT  444 (588)
Q Consensus       365 DLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gv  444 (588)
                      ||+|+||+++.+     +.++|+|||.+.......      ......|+..|++||.+.+..      .+.++||||||+
T Consensus       112 ~i~~~ni~~~~~-----~~~~l~d~~~~~~~~~~~------~~~~~~~~~~~~~pE~~~~~~------~~~~~Di~slG~  174 (244)
T smart00220      112 DLKPENILLDED-----GHVKLADFGLARQLDPGG------LLTTFVGTPEYMAPEVLLGKG------YGKAVDVWSLGV  174 (244)
T ss_pred             CcCHHHeEECCC-----CcEEEccccceeeecccc------ccccccCCcCCCCHHHHccCC------CCchhhHHHHHH
Confidence            999999999987     789999999998765432      112456888999999987443      346899999999


Q ss_pred             HHHHHhcCCCCCccc-ccccccc---ccccCCCC--CCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccc
Q psy4039         445 VAYEIFGHDNPFYQS-ARNTDYE---VNALPQLN--TNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWL  517 (588)
Q Consensus       445 il~ElltG~~Pf~~~-~~~~~~~---~~~~~~~~--~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~  517 (588)
                      ++|+|++|..||... .......   ........  ..++.++.+++.+||..||++||++.++++         |||+
T Consensus       175 ~l~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~~~---------~~~~  244 (244)
T smart00220      175 ILYELLTGKPPFPGDDQLLELFKKIGKPKPPFPPPEWKISPEAKDLIRKLLVKDPEKRLTAEEALQ---------HPFF  244 (244)
T ss_pred             HHHHHHhCCCCCCCCCcHHHHHHHHhccCCCCccccccCCHHHHHHHHHHccCCchhccCHHHHhh---------CCCC
Confidence            999999999999662 1111111   11111111  118899999999999999999999999999         9996

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG0984|consensus

Probab=99.97  E-value=4.5e-32  Score=253.03  Aligned_cols=209  Identities=22%  Similarity=0.222  Sum_probs=164.3

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCC
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENL  268 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l  268 (588)
                      -++..+++.-+..||+|+||.|=+-++.  |...|||.++..-   |+             ...+...+|+.+..+.   
T Consensus        41 ~eV~ad~L~~i~elGrGayG~vekmrh~~sg~imAvKri~~tv---n~-------------q~q~r~L~dldi~~r~---  101 (282)
T KOG0984|consen   41 FEVPADDLVGIEELGRGAYGVVEKMRHIQSGTIMAVKRIRATV---NS-------------QEQKRLLMDLDIIMRT---  101 (282)
T ss_pred             cccchhhhhhhhhhcCCccchhhheeeccCCeEEEEeeehhhc---Ch-------------HHHHHHHHhhhhhccC---
Confidence            3444467777889999999998777765  9999999995321   11             1223344566665444   


Q ss_pred             CCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHH---hcCCCCHHHHHHH
Q psy4039         269 PPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRE---RCAQLSMHERVLL  345 (588)
Q Consensus       269 ~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~---~~~~l~~~~~~~i  345 (588)
                      ...|.+|.+||.+.+.                       |     .+++.||.|..||+.+-++   ++..++|...-+|
T Consensus       102 ~~CPf~V~FyGa~~re-----------------------g-----dvwIcME~M~tSldkfy~~v~~~g~~ipE~vlGkI  153 (282)
T KOG0984|consen  102 VDCPFTVHFYGALFRE-----------------------G-----DVWICMELMDTSLDKFYRKVLKKGGTIPEDVLGKI  153 (282)
T ss_pred             CCCCeEEEeehhhhcc-----------------------c-----cEEEeHHHhhhhHHHHHHHHHhcCCcCchHHhhHh
Confidence            5899999999977653                       2     3999999999999988764   4668999999999


Q ss_pred             HHHHHHHHHHHHhC-CceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhc
Q psy4039         346 FTQLLEGVTHLNMH-RTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALA  424 (588)
Q Consensus       346 ~~ql~~gL~yLH~~-~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~  424 (588)
                      +..+.+||.|||++ .|||||+||+||||+.+     +++||||||.+-.+.+....      +-..|--.|||||.+..
T Consensus       154 a~Svv~al~~L~~kL~vIHRDvKPsNiLIn~~-----GqVKiCDFGIsG~L~dSiAk------t~daGCkpYmaPEri~~  222 (282)
T KOG0984|consen  154 AVSVVHALEFLHSKLSVIHRDVKPSNILINYD-----GQVKICDFGISGYLVDSIAK------TMDAGCKPYMAPERINP  222 (282)
T ss_pred             HHHHHHHHHHHHHHhhhhhccCCcceEEEccC-----CcEEEcccccceeehhhhHH------HHhcCCCccCChhhcCc
Confidence            99999999999986 99999999999999998     99999999999765442211      12347779999999976


Q ss_pred             CCCCccCCCCCcCchhhHHHHHHHHhcCCCCCccc
Q psy4039         425 TPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQS  459 (588)
Q Consensus       425 ~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~  459 (588)
                      +...-  -|+-|+||||+|+++.||.+++.||..+
T Consensus       223 e~n~~--gY~vksDvWSLGItmiElA~lr~PY~~w  255 (282)
T KOG0984|consen  223 ELNQK--GYSVKSDVWSLGITMIEMAILRFPYESW  255 (282)
T ss_pred             ccCcc--cceeehhhhhhhhhhhhhhhcccccccc
Confidence            54322  2567999999999999999999999764

>KOG0664|consensus

Probab=99.97  E-value=4.4e-33  Score=268.88  Aligned_cols=257  Identities=24%  Similarity=0.267  Sum_probs=193.3

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      .+.+-.+.||-|+||+||..++.  |+.||+|++.+.-             ....  ..+.+-+|+++|..+    +|.|
T Consensus        53 ~Di~PDRPIGYGAFGVVWsVTDPRdgrrvalkK~pnvf-------------q~L~--s~krvFre~kmLcfF----kHdN  113 (449)
T KOG0664|consen   53 QDIQPDRPIGYGAFGVVWSVTDPRSGKRVALKKMPNVF-------------QNLA--SCKRVFREIKMLSSF----RHDN  113 (449)
T ss_pred             ccCCCCCcccccceeEEEeccCCCCccchhHhhcchHH-------------HHHH--HHHHHHHHHHHHHhh----cccc
Confidence            34455678999999999999997  8999999985311             1111  234456789999888    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      ++..+++.+...                 ++      -...+|+++|.+..+|.+.|-... .++...+..+++||++||
T Consensus       114 VLSaLDILQPph-----------------~d------fFqEiYV~TELmQSDLHKIIVSPQ-~Ls~DHvKVFlYQILRGL  169 (449)
T KOG0664|consen  114 VLSLLDILQPAN-----------------PS------FFQELYVLTELMQSDLHKIIVSPQ-ALTPDHVKVFVYQILRGL  169 (449)
T ss_pred             HHHHHHhcCCCC-----------------ch------HHHHHHHHHHHHHhhhhheeccCC-CCCcchhhhhHHHHHhhh
Confidence            998887765422                 11      011378889998888888876543 899999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN  433 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~  433 (588)
                      .|||+.+|.||||||.|.|++++     ..+||||||+|+..+.....    .++..+-|-.|.|||++.+...     |
T Consensus       170 KYLHsA~ILHRDIKPGNLLVNSN-----CvLKICDFGLARvee~d~~~----hMTqEVVTQYYRAPEiLMGaRh-----Y  235 (449)
T KOG0664|consen  170 KYLHTANILHRDIKPGNLLVNSN-----CILKICDFGLARTWDQRDRL----NMTHEVVTQYYRAPELLMGARR-----Y  235 (449)
T ss_pred             HHHhhcchhhccCCCccEEeccC-----ceEEecccccccccchhhhh----hhHHHHHHHHhccHHHhhcchh-----h
Confidence            99999999999999999999998     89999999999986553322    2224556889999999998763     5


Q ss_pred             CCcCchhhHHHHHHHHhcCCCCCccccc---------------------------ccccccc-ccCCC--------CCCc
Q psy4039         434 YSKSDAWTAGTVAYEIFGHDNPFYQSAR---------------------------NTDYEVN-ALPQL--------NTNV  477 (588)
Q Consensus       434 ~~ksDVwS~Gvil~ElltG~~Pf~~~~~---------------------------~~~~~~~-~~~~~--------~~~~  477 (588)
                      +.+.||||+|||+.|++..+..|.....                           ....... ..|.+        +..-
T Consensus       236 s~AvDiWSVGCIFaELLgRrILFQAq~PiqQL~lItdLLGTPs~EaMr~ACEGAk~H~LR~~~k~Ps~~vLYtlsS~~~~  315 (449)
T KOG0664|consen  236 TGAVDIWSVGCIFAELLQRKILFQAAGPIEQLQMIIDLLGTPSQEAMKYACEGAKNHVLRAGLRAPDTQRLYKIASPDDK  315 (449)
T ss_pred             cCccceehhhHHHHHHHhhhhhhhccChHHHHHHHHHHhCCCcHHHHHHHhhhhHHHhhccCCCCCCccceeeecCCccc
Confidence            6789999999999999998888865210                           0000000 01111        1122


Q ss_pred             cHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCcccc
Q psy4039         478 PEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLY  518 (588)
Q Consensus       478 ~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~  518 (588)
                      ..+..+++.+++.+||++|.+.++++.         |+++.
T Consensus       316 ~heav~~~~~~l~~d~dkris~~~A~~---------~~~~~  347 (449)
T KOG0664|consen  316 NHEAVDLLQKLLHFDPDKRISVEEALQ---------HRYLE  347 (449)
T ss_pred             chHHHHHHHHHhCCCCcccccHhhhcc---------ccccc
Confidence            346788999999999999999999988         77765

>KOG1152|consensus

Probab=99.97  E-value=2.5e-31  Score=278.75  Aligned_cols=209  Identities=24%  Similarity=0.366  Sum_probs=171.9

Q ss_pred             cccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhccc-ccchhhhHHHHHhhhcCCC
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPL-RKPLRLNEDMLMNSVENLP  269 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~-~~~~~~~Ei~il~~l~~l~  269 (588)
                      -.+.+|...+.+|.|+||.|+.|+++  ...|+||+|++..+-.          ..++.- +--.+.-||.||..+..- 
T Consensus       558 ~k~s~yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~----------DtWvrDrkLGtVp~EIqIla~l~~~-  626 (772)
T KOG1152|consen  558 KKFSDYTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILV----------DTWVRDRKLGTVPSEIQILATLNKH-  626 (772)
T ss_pred             cccccceeeeeccccccceEEEeeecccceEEEeeehhhhhhhh----------hhhhcccccCccchhHHHHHHhhhc-
Confidence            34467999999999999999999998  6799999996532211          111100 111234699999998322 


Q ss_pred             CCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCC-C-cHHHHHHHhcCCCCHHHHHHHHH
Q psy4039         270 PHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYN-T-DLRNYLRERCAQLSMHERVLLFT  347 (588)
Q Consensus       270 ~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~-g-sL~~~L~~~~~~l~~~~~~~i~~  347 (588)
                      .|+||++++++|++..                            +.|++||--+ | +|.++|.-+. .++|.++..|++
T Consensus       627 sH~NIlKlLdfFEddd----------------------------~yyl~te~hg~gIDLFd~IE~kp-~m~E~eAk~IFk  677 (772)
T KOG1152|consen  627 SHENILKLLDFFEDDD----------------------------YYYLETEVHGEGIDLFDFIEFKP-RMDEPEAKLIFK  677 (772)
T ss_pred             CccchhhhhheeecCC----------------------------eeEEEecCCCCCcchhhhhhccC-ccchHHHHHHHH
Confidence            4999999999999853                            4999999873 4 8999998765 899999999999


Q ss_pred             HHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCC
Q psy4039         348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG  427 (588)
Q Consensus       348 ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~  427 (588)
                      ||+.|+++||++||||||||-+||.++.+     +-+||+|||.|...+++.   +.    .++||..|.|||++.+.++
T Consensus       678 QV~agi~hlh~~~ivhrdikdenvivd~~-----g~~klidfgsaa~~ksgp---fd----~f~gtv~~aapevl~g~~y  745 (772)
T KOG1152|consen  678 QVVAGIKHLHDQGIVHRDIKDENVIVDSN-----GFVKLIDFGSAAYTKSGP---FD----VFVGTVDYAAPEVLGGEKY  745 (772)
T ss_pred             HHHhccccccccCceecccccccEEEecC-----CeEEEeeccchhhhcCCC---cc----eeeeeccccchhhhCCCcc
Confidence            99999999999999999999999999998     899999999998776642   22    5789999999999988764


Q ss_pred             CccCCCCCcCchhhHHHHHHHHhcCCCCCcc
Q psy4039         428 LFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQ  458 (588)
Q Consensus       428 ~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~  458 (588)
                           -+..-|||++|+++|.++....||++
T Consensus       746 -----~gk~qdiwalgillytivykenpyyn  771 (772)
T KOG1152|consen  746 -----LGKPQDIWALGILLYTIVYKENPYYN  771 (772)
T ss_pred             -----CCCcchhhhhhheeeEEEeccCCCcC
Confidence                 34568999999999999999999975

>KOG1290|consensus

Probab=99.97  E-value=1.7e-29  Score=261.05  Aligned_cols=143  Identities=20%  Similarity=0.184  Sum_probs=114.2

Q ss_pred             ccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCC
Q psy4039         192 DVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLP  269 (588)
Q Consensus       192 ~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~  269 (588)
                      .+.-.+|.+.++||=|-|++||+|.+.  .+.||+|+.+.  ++         -       -.+....||++|+.++.--
T Consensus        74 ~F~~gRY~v~rKLGWGHFSTVWLawDtq~~r~VAlKVvKS--Aq---------h-------YtEaAlDEIklL~~v~~~D  135 (590)
T KOG1290|consen   74 VFNGGRYHVQRKLGWGHFSTVWLAWDTQNKRYVALKVVKS--AQ---------H-------YTEAALDEIKLLQQVREGD  135 (590)
T ss_pred             cccCceEEEEEeccccccceeEEEeeccCCeEEEEEEEeh--hh---------H-------HHHHHHHHHHHHHHHHhcC
Confidence            445578999999999999999999987  68899999852  11         1       1223356999999874321


Q ss_pred             -CC---CceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHh-cCCCCHHHHHH
Q psy4039         270 -PH---PNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRER-CAQLSMHERVL  344 (588)
Q Consensus       270 -~H---pNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~-~~~l~~~~~~~  344 (588)
                       +|   ..||+|++.|....|                        .+.++++|+|+++.+|..+|... -..++...+..
T Consensus       136 p~~~~~~~VV~LlD~FkhsGp------------------------NG~HVCMVfEvLGdnLLklI~~s~YrGlpl~~VK~  191 (590)
T KOG1290|consen  136 PNDPGKKCVVQLLDHFKHSGP------------------------NGQHVCMVFEVLGDNLLKLIKYSNYRGLPLSCVKE  191 (590)
T ss_pred             CCCCCCceeeeeeccceecCC------------------------CCcEEEEEehhhhhHHHHHHHHhCCCCCcHHHHHH
Confidence             23   379999999987432                        23379999999999999999865 24799999999


Q ss_pred             HHHHHHHHHHHHHh-CCceeccCCCCcEEEcCC
Q psy4039         345 LFTQLLEGVTHLNM-HRTAHRDLKSDNILLDCS  376 (588)
Q Consensus       345 i~~ql~~gL~yLH~-~~IvHrDLKp~NILld~~  376 (588)
                      |++||+.||.|||+ .||||-||||+|||+..+
T Consensus       192 I~~qvL~GLdYLH~ecgIIHTDlKPENvLl~~~  224 (590)
T KOG1290|consen  192 ICRQVLTGLDYLHRECGIIHTDLKPENVLLCST  224 (590)
T ss_pred             HHHHHHHHHHHHHHhcCccccCCCcceeeeecc
Confidence            99999999999997 599999999999998544

>KOG0670|consensus

Probab=99.97  E-value=2.2e-30  Score=268.54  Aligned_cols=252  Identities=24%  Similarity=0.342  Sum_probs=192.5

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCC--CC
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLP--PH  271 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~--~H  271 (588)
                      +.|.+....|+|-|++|.+|.+.  |..||||+|++...          |.++        =..|++||++|...-  .-
T Consensus       432 ~RY~V~~~~GkGvFs~Vvra~D~~r~~~vAiKIIRnNE~----------M~Kt--------Gl~EleiLkKL~~AD~Edk  493 (752)
T KOG0670|consen  432 SRYEVQGYTGKGVFSTVVRARDQARGQEVAIKIIRNNEV----------MHKT--------GLKELEILKKLNDADPEDK  493 (752)
T ss_pred             ceeEEEeccccceeeeeeeccccCCCCeeEEEEeecchH----------Hhhh--------hhHHHHHHHHhhccCchhh
Confidence            67888899999999999999997  88999999976432          1221        235889999884321  12


Q ss_pred             CceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhc--CCCCHHHHHHHHHHH
Q psy4039         272 PNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERC--AQLSMHERVLLFTQL  349 (588)
Q Consensus       272 pNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~--~~l~~~~~~~i~~ql  349 (588)
                      -++++|+..|..                            ..++++|+|-+..+|.+.|+.-+  ..|....+..++.|+
T Consensus       494 ~Hclrl~r~F~h----------------------------knHLClVFE~LslNLRevLKKyG~nvGL~ikaVRsYaqQL  545 (752)
T KOG0670|consen  494 FHCLRLFRHFKH----------------------------KNHLCLVFEPLSLNLREVLKKYGRNVGLHIKAVRSYAQQL  545 (752)
T ss_pred             hHHHHHHHHhhh----------------------------cceeEEEehhhhchHHHHHHHhCcccceeehHHHHHHHHH
Confidence            366777666554                            23699999999999999998753  468889999999999


Q ss_pred             HHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCc
Q psy4039         350 LEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF  429 (588)
Q Consensus       350 ~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~  429 (588)
                      .-||.+|-..||+|.||||+|||+++..    ..+||||||.|.........+|       .-+..|.|||++.+.++  
T Consensus       546 flALklLK~c~vlHaDIKPDNiLVNE~k----~iLKLCDfGSA~~~~eneitPY-------LVSRFYRaPEIiLG~~y--  612 (752)
T KOG0670|consen  546 FLALKLLKKCGVLHADIKPDNILVNESK----NILKLCDFGSASFASENEITPY-------LVSRFYRAPEIILGLPY--  612 (752)
T ss_pred             HHHHHHHHhcCeeecccCccceEeccCc----ceeeeccCccccccccccccHH-------HHHHhccCcceeecCcc--
Confidence            9999999999999999999999998763    6899999999987665433332       23558999999999874  


Q ss_pred             cCCCCCcCchhhHHHHHHHHhcCCCCCccccccc--------------------c-------------c-----------
Q psy4039         430 SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNT--------------------D-------------Y-----------  465 (588)
Q Consensus       430 ~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~--------------------~-------------~-----------  465 (588)
                          ....|+||+||+||||.||+..|.+...+.                    .             +           
T Consensus       613 ----d~~iD~WSvgctLYElYtGkIlFpG~TNN~MLrl~me~KGk~p~KmlRKgqF~dqHFD~d~nf~~~e~D~vT~r~~  688 (752)
T KOG0670|consen  613 ----DYPIDTWSVGCTLYELYTGKILFPGRTNNQMLRLFMELKGKFPNKMLRKGQFKDQHFDQDLNFLYIEVDKVTEREK  688 (752)
T ss_pred             ----cCCccceeeceeeEEeeccceecCCCCcHHHHHHHHHhcCCCcHHHhhhcchhhhhcccccceEEEecccccccee
Confidence                456999999999999999999987720000                    0             0           


Q ss_pred             ---cccccC------------CCCCC---ccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccC
Q psy4039         466 ---EVNALP------------QLNTN---VPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       466 ---~~~~~~------------~~~~~---~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~  519 (588)
                         .....|            .++..   +-..+++|+.+||..||++|.|..|+|.         ||||..
T Consensus       689 ~~vm~~vkPtkdl~s~l~~~q~~~deq~~~~~~~rdLLdkml~LdP~KRit~nqAL~---------HpFi~~  751 (752)
T KOG0670|consen  689 RTVMVNVKPTKDLGSELIAVQRLPDEQPKIVQQLRDLLDKMLILDPEKRITVNQALK---------HPFITE  751 (752)
T ss_pred             EEEecccCcchhHHHHHhccCCCCchhHHHHHHHHHHHHHHhccChhhcCCHHHHhc---------CCcccC
Confidence               000001            01111   1235889999999999999999999999         999863

>KOG1167|consensus

Probab=99.96  E-value=3.1e-30  Score=263.51  Aligned_cols=251  Identities=24%  Similarity=0.382  Sum_probs=191.1

Q ss_pred             CCeEEeeeecccCceeEEEEEEC-----CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCC
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR-----GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPP  270 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~-----g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~  270 (588)
                      +.|...++||.|+|++||++++.     .+.||+|.+...+                   .-..+.+|+++|..+   ..
T Consensus        36 ~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts-------------------~p~ri~~El~~L~~~---gG   93 (418)
T KOG1167|consen   36 NAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTS-------------------SPSRILNELEMLYRL---GG   93 (418)
T ss_pred             hhhhhhccccccchhhhhhhhHhhhccccceEeeeeccccc-------------------CchHHHHHHHHHHHh---cc
Confidence            77889999999999999999886     4689999984322                   233467899999887   78


Q ss_pred             CCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCC-CcHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4039         271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYN-TDLRNYLRERCAQLSMHERVLLFTQL  349 (588)
Q Consensus       271 HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~-gsL~~~L~~~~~~l~~~~~~~i~~ql  349 (588)
                      +.||+++.+++..                            +.++.+||||++ .+-.++..    .++..++..+++.+
T Consensus        94 ~~ni~~~~~~~rn----------------------------nd~v~ivlp~~~H~~f~~l~~----~l~~~~i~~Yl~~l  141 (418)
T KOG1167|consen   94 SDNIIKLNGCFRN----------------------------NDQVAIVLPYFEHDRFRDLYR----SLSLAEIRWYLRNL  141 (418)
T ss_pred             chhhhcchhhhcc----------------------------CCeeEEEecccCccCHHHHHh----cCCHHHHHHHHHHH
Confidence            9999999988765                            336999999995 56666654    57789999999999


Q ss_pred             HHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCC--------C-----------Cccc--------
Q psy4039         350 LEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKS--------G-----------LSMQ--------  402 (588)
Q Consensus       350 ~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~--------~-----------~~~~--------  402 (588)
                      +.||.|+|.+|||||||||+|+|.+...    ..-.|.|||+|...+.        .           ....        
T Consensus       142 l~Al~~~h~~GIvHRDiKpsNFL~n~~t----~rg~LvDFgLA~~~d~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~  217 (418)
T KOG1167|consen  142 LKALAHLHKNGIVHRDIKPSNFLYNRRT----QRGVLVDFGLAQRYDGYQQTEHSRSYSGRHATPAMGKDVHCQSVATAS  217 (418)
T ss_pred             HHHhhhhhccCccccCCCcccccccccc----CCceEEechhHHHHHhhhhhhhhhhhhcccCCccccCccccccccccc
Confidence            9999999999999999999999998764    5667999999972110        0           0000        


Q ss_pred             ----cc--------cccccccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCccc-----------
Q psy4039         403 ----YS--------SADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQS-----------  459 (588)
Q Consensus       403 ----~~--------~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~-----------  459 (588)
                          +.        .......||++|.|||++...+.     .++++||||.|||++.+++++.||...           
T Consensus       218 ~p~g~~~~~~~~r~~~~anrAGT~GfRaPEvL~k~~~-----QttaiDiws~GVI~Lslls~~~PFf~a~dd~~al~ei~  292 (418)
T KOG1167|consen  218 KPAGYYRRCNDGRPSERANRAGTPGFRAPEVLFRCPR-----QTTAIDIWSAGVILLSLLSRRYPFFKAKDDADALAEIA  292 (418)
T ss_pred             CCCCceeccCCCccceecccCCCCCCCchHHHhhccC-----cCCccceeeccceeehhhccccccccCccccchHHHHH
Confidence                00        00112469999999999987653     457899999999999999999998651           


Q ss_pred             ----------------c---cc-cc----------cccc-------------ccCCCCCCccHHHHHHHHHhhhhCCCCC
Q psy4039         460 ----------------A---RN-TD----------YEVN-------------ALPQLNTNVPEVMRRLVAKLLENDPSDR  496 (588)
Q Consensus       460 ----------------~---~~-~~----------~~~~-------------~~~~~~~~~~~~l~~Li~~~L~~dP~~R  496 (588)
                                      .   .. ..          +...             ......+..|..+.+|+.+||+.||.+|
T Consensus       293 tifG~~~mrk~A~l~g~~~l~~ksn~~~~~e~~~~f~s~~~~~~~~~~q~n~~~~~~~d~~~~~~~dlLdk~le~np~kR  372 (418)
T KOG1167|consen  293 TIFGSAEMRKCAALPGRILLWQKSNIPTIPELRVNFETLHIESIYKSRQPNTEREIGSDVFPALLLDLLDKCLELNPQKR  372 (418)
T ss_pred             HHhChHHHHHHhhcCCceeeeccccccccHHHHhchhccChhhcccccccceeeccccccccHHHHHHHHHHccCChhhc
Confidence                            0   00 00          0000             0001112345688999999999999999


Q ss_pred             CCHHHHHHHHhhhhhcCCcccc
Q psy4039         497 PSAELAATVCQLYLWAPKHWLY  518 (588)
Q Consensus       497 ps~~e~l~~L~~~~~~~h~w~~  518 (588)
                      .|++++|.         |||+.
T Consensus       373 itAEeALk---------HpFF~  385 (418)
T KOG1167|consen  373 ITAEDALK---------HPFFD  385 (418)
T ss_pred             ccHHHHhc---------CcCCc
Confidence            99999999         99997

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.96  E-value=9.2e-30  Score=296.22  Aligned_cols=214  Identities=15%  Similarity=0.152  Sum_probs=153.3

Q ss_pred             CC-CceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHH
Q psy4039         270 PH-PNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQ  348 (588)
Q Consensus       270 ~H-pNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~q  348 (588)
                      .| +||++++++|....+                    ++. ....++.+||+++++|.++|......+++.++..++.|
T Consensus        30 ~~~~~~~~~~~~~~~~~~--------------------~~~-~~~~~~~~~e~~~~~L~~~l~~~~~~~~~~~~~~i~~q   88 (793)
T PLN00181         30 SHIDYVRSLLGSHKEGNL--------------------DGL-DDDSIVRALECEDVSLRQWLDNPDRSVDAFECFHVFRQ   88 (793)
T ss_pred             hHHHHHHHhhcccCCccc--------------------ccc-ccchhhhhhccCCccHHHHHhcccccccHHHHHHHHHH
Confidence            67 789899998754211                    011 22347888999999999999865557999999999999


Q ss_pred             HHHHHHHHHhCCceeccCCCCcEEEcCCC--------------CCCCCceeeeccccccccCCCC-----------cccc
Q psy4039         349 LLEGVTHLNMHRTAHRDLKSDNILLDCSE--------------DNTCPQLVITDFGSSYTNKSGL-----------SMQY  403 (588)
Q Consensus       349 l~~gL~yLH~~~IvHrDLKp~NILld~~~--------------~~~~~~vkL~DFGla~~~~~~~-----------~~~~  403 (588)
                      |++||.|||++||+||||||+||||+...              .+....+||+|||+++......           ..+.
T Consensus        89 i~~al~~lH~~gIvHrDlKP~NiLl~~~~~~k~~d~~~~~~~~~~~~~~~ki~DfG~a~~~~~~~~~~~~~~~~~~~~~~  168 (793)
T PLN00181         89 IVEIVNAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDEDATTKSREIGSSRREEILSERRIEKLEEVKKQPF  168 (793)
T ss_pred             HHHHHHHHHhCCeeeccCCchhEEEcccCcEEEeeccccCcccccccCcccccccccccccccccccchhhhhccccCCC
Confidence            99999999999999999999999996421              0111567888888887532100           0001


Q ss_pred             ccccccccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccc-ccccccccCCCCCCccHHHH
Q psy4039         404 SSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARN-TDYEVNALPQLNTNVPEVMR  482 (588)
Q Consensus       404 ~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~-~~~~~~~~~~~~~~~~~~l~  482 (588)
                      .......+||+.|||||++.+..      ++.++|||||||++|||++|.+|+...... ........++......+...
T Consensus       169 ~~~~~~~~gt~~Y~APE~~~~~~------~~~~sDVwSlGviL~ELl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (793)
T PLN00181        169 PMKQILAMEMSWYTSPEEDNGSS------SNCASDVYRLGVLLFELFCPVSSREEKSRTMSSLRHRVLPPQILLNWPKEA  242 (793)
T ss_pred             cccccccCCCcceEChhhhccCC------CCchhhhhhHHHHHHHHhhCCCchhhHHHHHHHHHHhhcChhhhhcCHHHH
Confidence            11112356899999999997665      457899999999999999999997643111 01111111111111234567


Q ss_pred             HHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccC
Q psy4039         483 RLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       483 ~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~  519 (588)
                      +++.+||++||.+||++.++++         |||+..
T Consensus       243 ~~~~~~L~~~P~~Rps~~eil~---------h~~~~~  270 (793)
T PLN00181        243 SFCLWLLHPEPSCRPSMSELLQ---------SEFINE  270 (793)
T ss_pred             HHHHHhCCCChhhCcChHHHhh---------chhhhh
Confidence            8999999999999999999998         999974

>KOG0576|consensus

Probab=99.96  E-value=3.6e-30  Score=274.07  Aligned_cols=252  Identities=24%  Similarity=0.288  Sum_probs=198.9

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|+....+|.|+||.|||++++  +...|||+++.+...                 .-.-...||-+++.+    +|||
T Consensus        15 ddyellqrvgsgTygdvyKaRd~~s~elaavkvVkLep~d-----------------d~~~iqqei~~~~dc----~h~n   73 (829)
T KOG0576|consen   15 DDYELLQRVGSGTYGDVYKARDKRSGELAAVKVVKLEPGD-----------------DFSGIQQEIGMLRDC----RHPN   73 (829)
T ss_pred             cchhheeeecCCcccchhhhcccccCchhhheeeeccCCc-----------------cccccccceeeeecC----CCcC
Confidence            88999999999999999999997  889999999643211                 112234578888877    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      ||.+++.|-.                            ...+++.|||| +|+|.+.-+..+ .+++.++..+.+..++|
T Consensus        74 ivay~gsylr----------------------------~dklwicMEycgggslQdiy~~Tg-plselqiayvcRetl~g  124 (829)
T KOG0576|consen   74 IVAYFGSYLR----------------------------RDKLWICMEYCGGGSLQDIYHVTG-PLSELQIAYVCRETLQG  124 (829)
T ss_pred             hHHHHhhhhh----------------------------hcCcEEEEEecCCCcccceeeecc-cchhHHHHHHHhhhhcc
Confidence            9999876654                            33499999999 579988777665 89999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcC-CCCccC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALAT-PGLFSF  431 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~-~~~~~~  431 (588)
                      |.|||++|-+|||||-.|||+.+.     +.+|++|||.+-.+.....     ....+.||+.|||||+..-. .+.   
T Consensus       125 l~ylhs~gk~hRdiKGanilltd~-----gDvklaDfgvsaqitati~-----KrksfiGtpywmapEvaaverkgg---  191 (829)
T KOG0576|consen  125 LKYLHSQGKIHRDIKGANILLTDE-----GDVKLADFGVSAQITATIA-----KRKSFIGTPYWMAPEVAAVERKGG---  191 (829)
T ss_pred             chhhhcCCcccccccccceeeccc-----CceeecccCchhhhhhhhh-----hhhcccCCccccchhHHHHHhccc---
Confidence            999999999999999999999988     8899999999866544221     22357899999999997522 222   


Q ss_pred             CCCCcCchhhHHHHHHHHhcCCCCCcccccccccc-----ccccCC--CCCCccHHHHHHHHHhhhhCCCCCCCHHHHHH
Q psy4039         432 VNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE-----VNALPQ--LNTNVPEVMRRLVAKLLENDPSDRPSAELAAT  504 (588)
Q Consensus       432 ~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~-----~~~~~~--~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~  504 (588)
                       +..+||||++|+...|+---.+|...........     ....|.  -+...++.+.++++.+|..+|.+||+++.++.
T Consensus       192 -ynqlcdiwa~gitAiel~eLqpplfdlhpmr~l~LmTkS~~qpp~lkDk~kws~~fh~fvK~altknpKkRptaeklL~  270 (829)
T KOG0576|consen  192 -YNQLCDIWALGITAIELGELQPPLFDLHPMRALFLMTKSGFQPPTLKDKTKWSEFFHNFVKGALTKNPKKRPTAEKLLQ  270 (829)
T ss_pred             -ccccccccccccchhhhhhcCCcccccchHHHHHHhhccCCCCCcccCCccchHHHHHHHHHHhcCCCccCCChhhhee
Confidence             5578999999999999998888866532211110     111111  23467889999999999999999999999888


Q ss_pred             HHhhhhhcCCccccCC
Q psy4039         505 VCQLYLWAPKHWLYGA  520 (588)
Q Consensus       505 ~L~~~~~~~h~w~~~~  520 (588)
                               ||++...
T Consensus       271 ---------h~fvs~~  277 (829)
T KOG0576|consen  271 ---------HPFVSQT  277 (829)
T ss_pred             ---------ceeeccc
Confidence                     8888744

>KOG1024|consensus

Probab=99.95  E-value=8.4e-28  Score=242.39  Aligned_cols=260  Identities=19%  Similarity=0.254  Sum_probs=191.3

Q ss_pred             CCeEEeeeecccCceeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceE
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVV  275 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV  275 (588)
                      .++....++-+|.||.||.|.|+...         ..........|.......+.....+..|.-.+..+    .|||+.
T Consensus       284 ~Rv~l~~llqEGtFGri~~gI~~eEd---------t~n~~q~v~vKTvk~~AS~iQv~~~L~es~lly~~----sH~nll  350 (563)
T KOG1024|consen  284 CRVRLSCLLQEGTFGRIYRGIWREED---------TYNDCQEVLVKTVKQHASQIQVNLLLQESMLLYGA----SHPNLL  350 (563)
T ss_pred             hheechhhhhcCchhheeeeeecccC---------CcchHHHHHHHHHHhcccHHHHHHHHHHHHHHhcC----cCCCcc
Confidence            55777788999999999999887211         11111222223222323333344455566666665    799999


Q ss_pred             EEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCC-CcHHHHHHHh-------cCCCCHHHHHHHHH
Q psy4039         276 VMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYN-TDLRNYLRER-------CAQLSMHERVLLFT  347 (588)
Q Consensus       276 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~-gsL~~~L~~~-------~~~l~~~~~~~i~~  347 (588)
                      .+.+++.+..                           ...+.++.+++ |+|..||..+       ...++.-+...++.
T Consensus       351 ~V~~V~ie~~---------------------------~~P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~mas  403 (563)
T KOG1024|consen  351 SVLGVSIEDY---------------------------ATPFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMAS  403 (563)
T ss_pred             ceeEEEeecc---------------------------CcceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHH
Confidence            9999987631                           13677788886 8999999843       23577888999999


Q ss_pred             HHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCC
Q psy4039         348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG  427 (588)
Q Consensus       348 ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~  427 (588)
                      |++.|++|||++||||.||..+|.+||+.     ..+||+|=.++|..-.+......   ....-...||+||.+.... 
T Consensus       404 Qla~am~hlh~~~ViHkDiAaRNCvIdd~-----LqVkltDsaLSRDLFP~DYhcLG---DnEnRPvkWMslEal~n~~-  474 (563)
T KOG1024|consen  404 QLAMAMEHLHNHGVIHKDIAARNCVIDDQ-----LQVKLTDSALSRDLFPGDYHCLG---DNENRPVKWMSLEALQNSH-  474 (563)
T ss_pred             HHHHHHHHHHhcCcccchhhhhcceehhh-----eeEEeccchhccccCcccccccC---CCCCCcccccCHHHHhhhh-
Confidence            99999999999999999999999999988     89999999999875442221111   1122356899999998765 


Q ss_pred             CccCCCCCcCchhhHHHHHHHHhc-CCCCCcccc--ccc-cccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHH
Q psy4039         428 LFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSA--RNT-DYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAA  503 (588)
Q Consensus       428 ~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~--~~~-~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l  503 (588)
                           +++++|||||||++|||+| |+.|+..-.  +.. ..+.+.+-.-|.+||+++..+|.-||..+|++||+++|+.
T Consensus       475 -----yssasDvWsfGVllWELmtlg~~PyaeIDPfEm~~ylkdGyRlaQP~NCPDeLf~vMacCWallpeeRPsf~Qlv  549 (563)
T KOG1024|consen  475 -----YSSASDVWSFGVLLWELMTLGKLPYAEIDPFEMEHYLKDGYRLAQPFNCPDELFTVMACCWALLPEERPSFSQLV  549 (563)
T ss_pred             -----hcchhhhHHHHHHHHHHHhcCCCCccccCHHHHHHHHhccceecCCCCCcHHHHHHHHHHHhcCcccCCCHHHHH
Confidence                 5678999999999999997 889986521  111 1223344456789999999999999999999999999998


Q ss_pred             HHHhhh
Q psy4039         504 TVCQLY  509 (588)
Q Consensus       504 ~~L~~~  509 (588)
                      .-|..+
T Consensus       550 ~cLseF  555 (563)
T KOG1024|consen  550 ICLSEF  555 (563)
T ss_pred             HHHHHH
Confidence            866654

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.95  E-value=4.5e-27  Score=225.28  Aligned_cols=209  Identities=33%  Similarity=0.482  Sum_probs=173.4

Q ss_pred             ecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEEeeee
Q psy4039         204 IAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAF  281 (588)
Q Consensus       204 IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l~~~~  281 (588)
                      ||+|++|.||++...  ++.++||++.......                ....+.+|+.+++.+    +|++|+++++++
T Consensus         1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~----------------~~~~~~~e~~~~~~l----~~~~i~~~~~~~   60 (215)
T cd00180           1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSS----------------LLEELLREIEILKKL----NHPNIVKLYGVF   60 (215)
T ss_pred             CCcCCceEEEEEEecCCCcEEEEEEeccccchh----------------HHHHHHHHHHHHHhc----CCCCeeeEeeee
Confidence            689999999999998  8999999985322110                124566788999887    899999999988


Q ss_pred             eccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCC-CcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC
Q psy4039         282 TDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYN-TDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHR  360 (588)
Q Consensus       282 ~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~-gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yLH~~~  360 (588)
                      ...                            ...+++||++. ++|.+++......+++..+..++.++++++.|||+.|
T Consensus        61 ~~~----------------------------~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~  112 (215)
T cd00180          61 EDE----------------------------NHLYLVMEYCEGGSLKDLLKENEGKLSEDEILRILLQILEGLEYLHSNG  112 (215)
T ss_pred             ecC----------------------------CeEEEEEecCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            752                            24899999996 8999999875347899999999999999999999999


Q ss_pred             ceeccCCCCcEEEcC-CCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCCcCch
Q psy4039         361 TAHRDLKSDNILLDC-SEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDA  439 (588)
Q Consensus       361 IvHrDLKp~NILld~-~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDV  439 (588)
                      ++|+||+|.||+++. +     ..++|+|||.+........     ......++..|++||.+....     ..+.++|+
T Consensus       113 ~~H~dl~~~ni~~~~~~-----~~~~l~d~~~~~~~~~~~~-----~~~~~~~~~~~~~pe~~~~~~-----~~~~~~D~  177 (215)
T cd00180         113 IIHRDLKPENILLDSDN-----GKVKLADFGLSKLLTSDKS-----LLKTIVGTPAYMAPEVLLGKG-----YYSEKSDI  177 (215)
T ss_pred             eeccCCCHhhEEEeCCC-----CcEEEecCCceEEccCCcc-----hhhcccCCCCccChhHhcccC-----CCCchhhh
Confidence            999999999999998 5     6899999999987654321     111345788999999986641     14467999


Q ss_pred             hhHHHHHHHHhcCCCCCccccccccccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHH
Q psy4039         440 WTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAAT  504 (588)
Q Consensus       440 wS~Gvil~ElltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~  504 (588)
                      ||+|+++++|                             ..+.+++..|+..||++||+++++++
T Consensus       178 ~~lg~~~~~l-----------------------------~~~~~~l~~~l~~~p~~R~~~~~l~~  213 (215)
T cd00180         178 WSLGVILYEL-----------------------------PELKDLIRKMLQKDPEKRPSAKEILE  213 (215)
T ss_pred             HHHHHHHHHH-----------------------------HHHHHHHHHHhhCCcccCcCHHHHhh
Confidence            9999999999                             67899999999999999999999887

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG1345|consensus

Probab=99.95  E-value=1.3e-28  Score=238.09  Aligned_cols=247  Identities=20%  Similarity=0.207  Sum_probs=182.9

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      +.|.+.+.+|+|.||.+-+|.++  .+.+++|.+..      ....++.|.            +|...--.|   ..|.|
T Consensus        24 d~y~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~------p~tt~~dF~------------rEfhY~~~L---s~H~h   82 (378)
T KOG1345|consen   24 DVYTINKQLGEGRFGKILLAEHRQSKTRIVLKAVPR------PQTTQADFV------------REFHYSFFL---SPHQH   82 (378)
T ss_pred             hhhhHHHHhcccceeeEEeeeccCCceEEEeeccCc------chhhHHHHH------------HHhccceee---ccchh
Confidence            67999999999999999999998  67899998742      112234444            444433333   58999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCC-CcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYN-TDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~-gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      ||.-|++....                           .+..+.+|||+. |+|.+-+...  .+.|.-...++.|+++|
T Consensus        83 Ii~tY~vaFqt---------------------------~d~YvF~qE~aP~gdL~snv~~~--GigE~~~K~v~~ql~SA  133 (378)
T KOG1345|consen   83 IIDTYEVAFQT---------------------------SDAYVFVQEFAPRGDLRSNVEAA--GIGEANTKKVFAQLLSA  133 (378)
T ss_pred             hhHHHHHHhhc---------------------------CceEEEeeccCccchhhhhcCcc--cccHHHHHHHHHHHHHH
Confidence            99877665432                           124788999995 9998887665  78899999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      +.|+|++++||||||.+||||-..+.   ..+||||||+.+..+....        ..--+..|.|||++...+. -...
T Consensus       134 i~fMHsknlVHRdlK~eNiLif~~df---~rvKlcDFG~t~k~g~tV~--------~~~~~~~y~~pe~~~~~~n-e~~~  201 (378)
T KOG1345|consen  134 IEFMHSKNLVHRDLKAENILIFDADF---YRVKLCDFGLTRKVGTTVK--------YLEYVNNYHAPELCDTVVN-EKLV  201 (378)
T ss_pred             HHHhhccchhhcccccceEEEecCCc---cEEEeeecccccccCceeh--------hhhhhcccCCcHHHhhccc-cceE
Confidence            99999999999999999999965433   6899999999876544221        1223568999999865432 1111


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcccccc-c------cccc---cccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHH
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARN-T------DYEV---NALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA  502 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~-~------~~~~---~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~  502 (588)
                      ..+.+|||.||+++|.+++|..||...... .      .+..   ...|.....+++.+..+.++-|.++|++|--..++
T Consensus       202 ~~ps~D~WqfGIi~f~cltG~~PWQka~~~d~~Y~~~~~w~~rk~~~~P~~F~~fs~~a~r~Fkk~lt~~~~drcki~~~  281 (378)
T KOG1345|consen  202 VNPSTDIWQFGIIFFYCLTGKFPWQKASIMDKPYWEWEQWLKRKNPALPKKFNPFSEKALRLFKKSLTPRFKDRCKIWTA  281 (378)
T ss_pred             ecccccchheeeeeeeeecCCCcchhhhccCchHHHHHHHhcccCccCchhhcccCHHHHHHHHHhcCCcccccchhHHH
Confidence            345689999999999999999999753111 1      1111   23444456678999999999999999999555554


Q ss_pred             HH
Q psy4039         503 AT  504 (588)
Q Consensus       503 l~  504 (588)
                      ..
T Consensus       282 kk  283 (378)
T KOG1345|consen  282 KK  283 (378)
T ss_pred             HH
Confidence            44

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.94  E-value=3.5e-27  Score=223.65  Aligned_cols=152  Identities=21%  Similarity=0.206  Sum_probs=120.7

Q ss_pred             CcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCcccc
Q psy4039         324 TDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQY  403 (588)
Q Consensus       324 gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~  403 (588)
                      |+|.+++..++..+++.+++.|+.|+++||.|||+++      ||+|||++.+     +.+|+  ||+++.....     
T Consensus         1 GsL~~~l~~~~~~l~~~~~~~i~~qi~~~L~~lH~~~------kp~Nil~~~~-----~~~~~--fG~~~~~~~~-----   62 (176)
T smart00750        1 VSLADILEVRGRPLNEEEIWAVCLQCLRALRELHRQA------KSGNILLTWD-----GLLKL--DGSVAFKTPE-----   62 (176)
T ss_pred             CcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhcC------CcccEeEcCc-----cceee--ccceEeeccc-----
Confidence            6899999876657999999999999999999999998      9999999987     78888  9999765432     


Q ss_pred             ccccccccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccc----cccccCC------C
Q psy4039         404 SSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY----EVNALPQ------L  473 (588)
Q Consensus       404 ~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~----~~~~~~~------~  473 (588)
                           ...||+.|||||++.+..      ++.++|||||||++|||++|+.||.........    .....+.      .
T Consensus        63 -----~~~g~~~y~aPE~~~~~~------~~~~~DiwSlG~il~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (176)
T smart00750       63 -----QSRVDPYFMAPEVIQGQS------YTEKADIYSLGITLYEALDYELPYNEERELSAILEILLNGMPADDPRDRSN  131 (176)
T ss_pred             -----cCCCcccccChHHhcCCC------CcchhhHHHHHHHHHHHHhCCCCccccchhcHHHHHHHHHhccCCcccccc
Confidence                 125899999999997765      457899999999999999999999753221110    0000000      1


Q ss_pred             CCCccH--HHHHHHHHhhhhCCCCCCCHHHHHH
Q psy4039         474 NTNVPE--VMRRLVAKLLENDPSDRPSAELAAT  504 (588)
Q Consensus       474 ~~~~~~--~l~~Li~~~L~~dP~~Rps~~e~l~  504 (588)
                      +..+++  ++++++.+||..||.+||++.++++
T Consensus       132 ~~~~~~~~~~~~~i~~cl~~~p~~Rp~~~~ll~  164 (176)
T smart00750      132 LESVSAARSFADFMRVCASRLPQRREAANHYLA  164 (176)
T ss_pred             HHHHHhhhhHHHHHHHHHhcccccccCHHHHHH
Confidence            122333  6999999999999999999999999

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.94  E-value=1.4e-25  Score=219.13  Aligned_cols=199  Identities=29%  Similarity=0.407  Sum_probs=159.9

Q ss_pred             eEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceE
Q psy4039         198 IQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVV  275 (588)
Q Consensus       198 ~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV  275 (588)
                      |.+.+.||.|++|.||++.+.  +..+|||.+......                .....+.+|+..++.+    +|+|++
T Consensus         1 ~~~~~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~----------------~~~~~~~~e~~~~~~~----~~~~i~   60 (225)
T smart00221        1 YELGKKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTE----------------KQREEFLREIRILKKL----KHPNIV   60 (225)
T ss_pred             CceeeEeecCCCeEEEEEEEcCCCcEEEEEeeccccch----------------HHHHHHHHHHHHHHhC----CCCChh
Confidence            567889999999999999997  589999998532211                0223556688888887    899999


Q ss_pred             EEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCC-CcHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy4039         276 VMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYN-TDLRNYLRERCAQLSMHERVLLFTQLLEGVT  354 (588)
Q Consensus       276 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~-gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~  354 (588)
                      ++++++....                            ..++++|++. ++|.+++......+++.....++.+++.++.
T Consensus        61 ~~~~~~~~~~----------------------------~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~  112 (225)
T smart00221       61 KLYGVFEDPE----------------------------PLYLVMEYCEGGDLFDYLRKKGGKLSEEEARFYLRQILEALE  112 (225)
T ss_pred             hheeeeecCC----------------------------ceEEEEeccCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Confidence            9999876531                            3889999995 5999999876423899999999999999999


Q ss_pred             HHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCC
Q psy4039         355 HLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY  434 (588)
Q Consensus       355 yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~  434 (588)
                      |||+++++|+||+|+||+++.+     ..++|+|||.+.........    ......++..|++||.+. ....    .+
T Consensus       113 ~lh~~~i~h~di~~~ni~v~~~-----~~~~l~d~g~~~~~~~~~~~----~~~~~~~~~~~~~pe~~~-~~~~----~~  178 (225)
T smart00221      113 YLHSLGIVHRDLKPENILLGMD-----GLVKLADFGLARFIHRDLAA----LLKTVKGTPFYLAPEVLL-GGKG----YG  178 (225)
T ss_pred             HHHhCCeecCCCCHHHEEEcCC-----CCEEEeeCceeeEecCcccc----cccceeccCCcCCHhHhc-CCCC----CC
Confidence            9999999999999999999987     78999999999876543200    111356788999999984 2211    34


Q ss_pred             CcCchhhHHHHHHHHhcCCCCCcc
Q psy4039         435 SKSDAWTAGTVAYEIFGHDNPFYQ  458 (588)
Q Consensus       435 ~ksDVwS~Gvil~ElltG~~Pf~~  458 (588)
                      .++||||||+++|||++|+.||..
T Consensus       179 ~~~Dv~~lG~~~~~l~~g~~pf~~  202 (225)
T smart00221      179 EAVDIWSLGVILYELLWGPEPFSG  202 (225)
T ss_pred             chhhHHHHHHHHHHHHHCCCCccc
Confidence            589999999999999999999966

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG0195|consensus

Probab=99.91  E-value=1.3e-24  Score=210.26  Aligned_cols=258  Identities=17%  Similarity=0.238  Sum_probs=204.2

Q ss_pred             ccCCCccccccCCeEEeeeecccCceeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhh
Q psy4039         185 ETLPDVDDVKVDDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNS  264 (588)
Q Consensus       185 ~~~~~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~  264 (588)
                      +++..-..++..++.+..+|.+...|..|+|+|.|..+++|++.               .+++.....++|.+|.--|+-
T Consensus       179 atlsr~~gid~~~lnl~tkl~e~hsgelwrgrwqgndivakil~---------------vr~~t~risrdfneefp~lri  243 (448)
T KOG0195|consen  179 ATLSRYTGIDVSSLNLITKLAESHSGELWRGRWQGNDIVAKILN---------------VREVTARISRDFNEEFPALRI  243 (448)
T ss_pred             cccccccCcchhhhhhhhhhccCCCcccccccccCcchhhhhhh---------------hhhcchhhcchhhhhCcceee
Confidence            34445567888888889999999999999999999999999983               455666677888888888776


Q ss_pred             hcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCC-CcHHHHHHHh-cCCCCHHHH
Q psy4039         265 VENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYN-TDLRNYLRER-CAQLSMHER  342 (588)
Q Consensus       265 l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~-gsL~~~L~~~-~~~l~~~~~  342 (588)
                      +    .||||..+++.|....                            ++.++..|+. |||...|++. ....+..++
T Consensus       244 f----shpnilpvlgacnspp----------------------------nlv~isq~mp~gslynvlhe~t~vvvd~sqa  291 (448)
T KOG0195|consen  244 F----SHPNILPVLGACNSPP----------------------------NLVIISQYMPFGSLYNVLHEQTSVVVDHSQA  291 (448)
T ss_pred             e----cCCchhhhhhhccCCC----------------------------CceEeeeeccchHHHHHHhcCccEEEecchH
Confidence            6    8999999999998632                            3888999995 9999999976 335788999


Q ss_pred             HHHHHHHHHHHHHHHhC-Cce-eccCCCCcEEEcCCCCCCCCceeee--ccccccccCCCCccccccccccccCCccccc
Q psy4039         343 VLLFTQLLEGVTHLNMH-RTA-HRDLKSDNILLDCSEDNTCPQLVIT--DFGSSYTNKSGLSMQYSSADIELGGNVALMA  418 (588)
Q Consensus       343 ~~i~~ql~~gL~yLH~~-~Iv-HrDLKp~NILld~~~~~~~~~vkL~--DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~A  418 (588)
                      .+++.++++|++|||+- .++ ---|.+..++||++     .+++|+  |--++-..            ....-.|.||+
T Consensus       292 v~faldiargmaflhslep~ipr~~lns~hvmided-----ltarismad~kfsfqe------------~gr~y~pawms  354 (448)
T KOG0195|consen  292 VRFALDIARGMAFLHSLEPMIPRFYLNSKHVMIDED-----LTARISMADTKFSFQE------------VGRAYSPAWMS  354 (448)
T ss_pred             HHHHHHHHhhHHHHhhcchhhhhhhcccceEEecch-----hhhheecccceeeeec------------cccccCcccCC
Confidence            99999999999999984 333 44688999999988     455543  32222111            12223679999


Q ss_pred             hhHHhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccc----cccccccccCCCCCCccHHHHHHHHHhhhhCCC
Q psy4039         419 PEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSAR----NTDYEVNALPQLNTNVPEVMRRLVAKLLENDPS  494 (588)
Q Consensus       419 PE~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~----~~~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~  494 (588)
                      ||.++..+...   +-.++|+|||++++||+.|...||.+...    .....+..+..+|+.++..+..|+.-|+..||.
T Consensus       355 pealqrkped~---n~raadmwsfaillwel~trevpfadlspmecgmkialeglrv~ippgis~hm~klm~icmnedpg  431 (448)
T KOG0195|consen  355 PEALQRKPEDL---NIRAADMWSFAILLWELNTREVPFADLSPMECGMKIALEGLRVHIPPGISRHMNKLMNICMNEDPG  431 (448)
T ss_pred             HHHHhcCchhc---chhhhhHHHHHHHHHHhhccccccccCCchhhhhhhhhccccccCCCCccHHHHHHHHHHhcCCCC
Confidence            99998877543   34579999999999999999999987432    233345667788999999999999999999999


Q ss_pred             CCCCHHHHHHHHhhh
Q psy4039         495 DRPSAELAATVCQLY  509 (588)
Q Consensus       495 ~Rps~~e~l~~L~~~  509 (588)
                      +||.++.++-+|+.+
T Consensus       432 krpkfdmivpilekm  446 (448)
T KOG0195|consen  432 KRPKFDMIVPILEKM  446 (448)
T ss_pred             cCCCcceehhhHHHh
Confidence            999999998877754

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.90  E-value=1.3e-23  Score=220.73  Aligned_cols=188  Identities=15%  Similarity=0.095  Sum_probs=131.7

Q ss_pred             ccccCCeEEeeeecccCceeEEEEEEC---CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCC
Q psy4039         192 DVKVDDIQIGKFIAKGTNAVVYEATFR---GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENL  268 (588)
Q Consensus       192 ~i~~~~~~~~~~IG~G~fG~Vy~a~~~---g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l  268 (588)
                      ....++|.+.+.||+|+||+||+|.+.   ++.||||++.........            ....+.+.+|+.+|+.+   
T Consensus        14 ~~~~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~------------~~~~~~~~~E~~iL~~L---   78 (365)
T PRK09188         14 PALSARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSK------------PLARHLAAREIRALKTV---   78 (365)
T ss_pred             ccccCCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEeccccccccc------------HHHHHHHHHHHHHHHhc---
Confidence            344488999999999999999999874   677899987421100000            00224477899999998   


Q ss_pred             CCCCceEE-EeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHH
Q psy4039         269 PPHPNVVV-MHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLF  346 (588)
Q Consensus       269 ~~HpNIV~-l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~  346 (588)
                       +|+|||. ++++                           +     ..|+||||+ +++|.. +.    ...   ...++
T Consensus        79 -~h~~iv~~l~~~---------------------------~-----~~~LVmE~~~G~~L~~-~~----~~~---~~~~~  117 (365)
T PRK09188         79 -RGIGVVPQLLAT---------------------------G-----KDGLVRGWTEGVPLHL-AR----PHG---DPAWF  117 (365)
T ss_pred             -cCCCCCcEEEEc---------------------------C-----CcEEEEEccCCCCHHH-hC----ccc---hHHHH
Confidence             8999984 4421                           1     279999999 467752 21    111   14678


Q ss_pred             HHHHHHHHHHHhCCceeccC-CCCcEEEcCCCCCCCCceeeeccccccccCCCCcccc---ccccccccCCccccchhHH
Q psy4039         347 TQLLEGVTHLNMHRTAHRDL-KSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQY---SSADIELGGNVALMAPEVA  422 (588)
Q Consensus       347 ~ql~~gL~yLH~~~IvHrDL-Kp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~---~~~~~~~~GT~~Y~APE~l  422 (588)
                      .|+++||.|||++||+|||| ||+|||++.+     +.+||+|||+|+..........   ...-....|++.|+|||++
T Consensus       118 ~~i~~aL~~lH~~gIiHrDL~KP~NILv~~~-----~~ikLiDFGlA~~~~~~~~~~~~~~~~d~~~~~~~~~~~~pe~~  192 (365)
T PRK09188        118 RSAHRALRDLHRAGITHNDLAKPQNWLMGPD-----GEAAVIDFQLASVFRRRGALYRIAAYEDLRHLLKHKRTYAPDAL  192 (365)
T ss_pred             HHHHHHHHHHHHCCCeeCCCCCcceEEEcCC-----CCEEEEECccceecccCcchhhhhhhhhhhhhhccCccCCcccC
Confidence            99999999999999999999 9999999876     7899999999997655322111   1111356799999999999


Q ss_pred             hcCCCCccCCCCCcCchh
Q psy4039         423 LATPGLFSFVNYSKSDAW  440 (588)
Q Consensus       423 ~~~~~~~~~~~~~ksDVw  440 (588)
                      ...........+..+|-|
T Consensus       193 ~~~~~~~~~~~~~~~dgW  210 (365)
T PRK09188        193 TPRERKILARKSLPSRIW  210 (365)
T ss_pred             ChhhhccccccccccCcE
Confidence            755432222222336766

>KOG0590|consensus

Probab=99.90  E-value=1.6e-24  Score=241.71  Aligned_cols=257  Identities=21%  Similarity=0.266  Sum_probs=182.3

Q ss_pred             EEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEE
Q psy4039         199 QIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVV  276 (588)
Q Consensus       199 ~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~  276 (588)
                      .....+|.|.+|.|+.+...  ....+.|..+.........   +.        ....+..|.-+-..    +.|||++.
T Consensus       321 ~~~~~~g~ga~g~~~~~~~~~~~~~~~~~~~r~~~~~~~s~---~~--------~~~~i~sE~~i~~~----l~h~~~~e  385 (601)
T KOG0590|consen  321 KPGRVLGSGAYGSVRIAKRRSDLKSFPEKEFRVRVKPTESE---RK--------YNYNITSEFCIGSS----LSHPNIIE  385 (601)
T ss_pred             CccceeeecccCceEEEEecCCCccchhhhhhcccCCcccH---HH--------Hhhhhhhheeeccc----ccCCchhh
Confidence            45678999999977776654  3334444332100011000   00        00002234334333    38999987


Q ss_pred             EeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q psy4039         277 MHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHL  356 (588)
Q Consensus       277 l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yL  356 (588)
                      .+..+.+..                            ..+-.||||.++|..++.... .++..++-.++.|++.|+.||
T Consensus       386 ~l~~~~~~~----------------------------~~~~~mE~~~~Dlf~~~~~~~-~~~~~e~~c~fKqL~~Gv~y~  436 (601)
T KOG0590|consen  386 TLDIVQEID----------------------------GILQSMEYCPYDLFSLVMSNG-KLTPLEADCFFKQLLRGVKYL  436 (601)
T ss_pred             hHHHHhhcc----------------------------cchhhhhcccHHHHHHHhccc-ccchhhhhHHHHHHHHHHHHH
Confidence            776665522                            133339999769999887753 789999999999999999999


Q ss_pred             HhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCCc
Q psy4039         357 NMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSK  436 (588)
Q Consensus       357 H~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~k  436 (588)
                      |+.||.|||||++|+++..+     +.+||+|||.+.....+.... .......+|+-.|+|||++.+...     ....
T Consensus       437 h~~GiahrdlK~enll~~~~-----g~lki~Dfg~~~vf~~~~e~~-~~~~~g~~gS~pY~apE~~~~~~y-----dpr~  505 (601)
T KOG0590|consen  437 HSMGLAHRDLKLENLLVTEN-----GILKIIDFGAASVFRYPWEKN-IHESSGIVGSDPYLAPEVLTGKEY-----DPRA  505 (601)
T ss_pred             HhcCceeccCccccEEEecC-----CceEEeecCcceeeccCcchh-hhhhcCcccCCcCcCccccccccc-----Ccch
Confidence            99999999999999999988     899999999998755432211 122346889999999999987763     2345


Q ss_pred             CchhhHHHHHHHHhcCCCCCccccccccc-----------cccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHH
Q psy4039         437 SDAWTAGTVAYEIFGHDNPFYQSARNTDY-----------EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATV  505 (588)
Q Consensus       437 sDVwS~Gvil~ElltG~~Pf~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~  505 (588)
                      .||||.|+++..|++|+.||.........           .......+...+|...+.+|.+||+.||.+|.|++++++ 
T Consensus       506 vDiwS~~ii~~~m~~~~~~Wk~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~l~~~P~~R~ti~~i~~-  584 (601)
T KOG0590|consen  506 VDVWSCGIIYICMILGRFPWKVAKKSDNSFKTNNYSDQRNIFEGPNRLLSLLPRETRIIIYRMLQLDPTKRITIEQILN-  584 (601)
T ss_pred             hhhhhccceEEEEecCCCccccccccccchhhhccccccccccChHHHHHhchhhHHHHHHHHccCChhheecHHHHhh-
Confidence            89999999999999999999653222110           011112234567888999999999999999999999999 


Q ss_pred             HhhhhhcCCccccC
Q psy4039         506 CQLYLWAPKHWLYG  519 (588)
Q Consensus       506 L~~~~~~~h~w~~~  519 (588)
                              .+|++.
T Consensus       585 --------d~W~~~  590 (601)
T KOG0590|consen  585 --------DEWIRS  590 (601)
T ss_pred             --------ChHhhh
Confidence                    999973

>KOG1164|consensus

Probab=99.89  E-value=8e-22  Score=206.07  Aligned_cols=264  Identities=17%  Similarity=0.164  Sum_probs=190.2

Q ss_pred             CeEEeeeecccCceeEEEEEECC---eeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         197 DIQIGKFIAKGTNAVVYEATFRG---VEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~~~g---~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      +|.+.+.||+|+||.||.+.+..   ..+|+|........                 ....+..|..++..+.....-++
T Consensus        19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~-----------------~~~~l~~E~~vl~~l~~~~~~~~   81 (322)
T KOG1164|consen   19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGS-----------------KPSVLKIEIQVLKKLEKKNGPSH   81 (322)
T ss_pred             ceEEeeeccccCCceEEEEEecCCCCeeEEEEEEEecccC-----------------CCccchhHHHHHHHHhhhcCCCC
Confidence            89999999999999999999874   46999987432111                 11145668888888732112246


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhc-CCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERC-AQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~-~~l~~~~~~~i~~ql~~g  352 (588)
                      +..+++....                           ....-|+||+.++.+|.++..... ..++..++..|+.|++.+
T Consensus        82 ~~~~~~~G~~---------------------------~~~~~~iVM~l~G~sL~dl~~~~~~~~fs~~T~l~ia~q~l~~  134 (322)
T KOG1164|consen   82 FPKLLDHGRS---------------------------TEDFNFIVMSLLGPSLEDLRKRNPPGRFSRKTVLRIAIQNLNA  134 (322)
T ss_pred             CCEEEEeccC---------------------------CCceeEEEEeccCccHHHHHHhCCCCCcCHhHHHHHHHHHHHH
Confidence            6677665421                           122489999999999999886654 689999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeecccccc--ccCC-CCc--cccccccccccCCccccchhHHhcCCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSY--TNKS-GLS--MQYSSADIELGGNVALMAPEVALATPG  427 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~--~~~~-~~~--~~~~~~~~~~~GT~~Y~APE~l~~~~~  427 (588)
                      |.+||+.|++||||||+|+++..........+.|.|||+|+  .... ...  .+.........||..|+++.+..+.. 
T Consensus       135 l~~lH~~G~iHRDiKp~N~~~g~~~~~~~~~~~llDfGlar~~~~~~~~~~~~~~~r~~~~~~rGT~ry~S~~~H~~~e-  213 (322)
T KOG1164|consen  135 LEDLHSKGFIHRDIKPENFVVGQSSRSEVRTLYLLDFGLARRFKYVGDSGGNLRPPRPQKGLFRGTLRYASINVHLGIE-  213 (322)
T ss_pred             HHHHHhcCcccCCcCHHHeeecCCCCcccceEEEEecCCCccccccCCCCcccccCCCCccCCCCccccccHHHhCCCc-
Confidence            99999999999999999999986632211479999999998  3222 111  11111122456999999999988776 


Q ss_pred             CccCCCCCcCchhhHHHHHHHHhcCCCCCcccccc---ccccc----cccCCCCCCccHHHHHHHHHhhhhCCCCCCCHH
Q psy4039         428 LFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARN---TDYEV----NALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE  500 (588)
Q Consensus       428 ~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~---~~~~~----~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~  500 (588)
                           .+.+-|+||++.++.|++.|..||......   ..+..    ..........|.++.++...+-..+...+|...
T Consensus       214 -----~~r~DDles~~Y~l~el~~g~LPW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pdy~  288 (322)
T KOG1164|consen  214 -----QGRRDDLESLFYMLLELLKGSLPWEALEMTDLKSKFEKDPRKLLTDRFGDLKPEEFAKILEYIDSLDYEDKPDYE  288 (322)
T ss_pred             -----cCCchhhhhHHHHHHHHhcCCCCCccccccchHHHHHHHhhhhccccccCCChHHHHHHHHHhhccCCcCCCCHH
Confidence                 457789999999999999999999653211   11111    011112344567788888888888999999999


Q ss_pred             HHHHHHhhhh
Q psy4039         501 LAATVCQLYL  510 (588)
Q Consensus       501 e~l~~L~~~~  510 (588)
                      .+...++...
T Consensus       289 ~~~~~l~~~~  298 (322)
T KOG1164|consen  289 KLAELLKDVF  298 (322)
T ss_pred             HHHHHHHHHH
Confidence            9888765443

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.89  E-value=8.6e-22  Score=199.69  Aligned_cols=251  Identities=27%  Similarity=0.338  Sum_probs=186.3

Q ss_pred             eEEeeeecccCceeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC-ceEE
Q psy4039         198 IQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP-NVVV  276 (588)
Q Consensus       198 ~~~~~~IG~G~fG~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp-NIV~  276 (588)
                      |.+.+.||.|+||.||++.+. ..+|+|.+........              .....+.+|+.+++.+    .|+ ||++
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~-~~~~~k~~~~~~~~~~--------------~~~~~~~~e~~~~~~~----~~~~~i~~   62 (384)
T COG0515           2 YRILRKLGEGSFGEVYLARDR-KLVALKVLAKKLESKS--------------KEVERFLREIQILASL----NHPPNIVK   62 (384)
T ss_pred             ceeEEeecCCCCeEEEEEEec-cEEEEEeechhhccch--------------hHHHHHHHHHHHHHHc----cCCcceee
Confidence            678889999999999999988 8899999854221111              1234566788888887    666 7999


Q ss_pred             EeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc--CCCCHHHHHHHHHHHHHHH
Q psy4039         277 MHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC--AQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       277 l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~--~~l~~~~~~~i~~ql~~gL  353 (588)
                      +++.+....                            ..+++++++ ++++.+++....  ..++......++.|++.++
T Consensus        63 ~~~~~~~~~----------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  114 (384)
T COG0515          63 LYDFFQDEG----------------------------SLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSAL  114 (384)
T ss_pred             EEEEEecCC----------------------------EEEEEEecCCCCcHHHHHHhcccccCCCHHHHHHHHHHHHHHH
Confidence            999985421                            279999999 578887776553  2689999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCC-ceeeeccccccccCCCCccccc-cccccccCCccccchhHHhcCC-CCcc
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCP-QLVITDFGSSYTNKSGLSMQYS-SADIELGGNVALMAPEVALATP-GLFS  430 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~-~vkL~DFGla~~~~~~~~~~~~-~~~~~~~GT~~Y~APE~l~~~~-~~~~  430 (588)
                      .|+|+.+++|||+||+||+++..     . .++++|||.++........... .......||..|+|||.+.+.. .   
T Consensus       115 ~~~H~~~~~hrd~kp~nil~~~~-----~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~t~~~~~pe~~~~~~~~---  186 (384)
T COG0515         115 EYLHSKGIIHRDIKPENILLDRD-----GRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPEVLLGLSLA---  186 (384)
T ss_pred             HHHHhCCeeccCCCHHHeeecCC-----CCeEEEeccCcceecCCCCccccccccccccccccccCCHHHhcCCCCC---
Confidence            99999999999999999999987     5 6999999999865443221100 1123578999999999997631 1   


Q ss_pred             CCCCCcCchhhHHHHHHHHhcCCCCCccccc----cccc---cccccC----CCCCCc----cHHHHHHHHHhhhhCCCC
Q psy4039         431 FVNYSKSDAWTAGTVAYEIFGHDNPFYQSAR----NTDY---EVNALP----QLNTNV----PEVMRRLVAKLLENDPSD  495 (588)
Q Consensus       431 ~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~----~~~~---~~~~~~----~~~~~~----~~~l~~Li~~~L~~dP~~  495 (588)
                       ......|+||+|++++++++|..||.....    ....   .....+    ......    ...+.+++..|+..+|..
T Consensus       187 -~~~~~~D~~s~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (384)
T COG0515         187 -YASSSSDIWSLGITLYELLTGLPPFEGEKNSSATSQTLKIILELPTPSLASPLSPSNPELISKAASDLLKKLLAKDPKN  265 (384)
T ss_pred             -CCCchHhHHHHHHHHHHHHhCCCCCCCCCccccHHHHHHHHHhcCCcccccccCccccchhhHHHHHHHHHHHhcCchh
Confidence             134678999999999999999999765432    1111   111111    111111    257899999999999999


Q ss_pred             CCCHHHHHH
Q psy4039         496 RPSAELAAT  504 (588)
Q Consensus       496 Rps~~e~l~  504 (588)
                      |.+..+...
T Consensus       266 r~~~~~~~~  274 (384)
T COG0515         266 RLSSSSDLS  274 (384)
T ss_pred             cCCHHHHhh
Confidence            999988766

>KOG1163|consensus

Probab=99.88  E-value=3e-22  Score=191.30  Aligned_cols=259  Identities=17%  Similarity=0.237  Sum_probs=192.6

Q ss_pred             ccccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcC
Q psy4039         190 VDDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVEN  267 (588)
Q Consensus       190 ~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~  267 (588)
                      ...+....|.+.++||+|+||.+|.|...  |..||||+=.+                   ..+...+..|..+.+.++.
T Consensus         9 ~~~iv~gky~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~-------------------~a~hpqL~yEskvY~iL~~   69 (341)
T KOG1163|consen    9 EELIVGGKYKLVRKIGSGSFGDIYLGISITSGEEVAIKLESS-------------------KAKHPQLLYESKVYRILQG   69 (341)
T ss_pred             hhheeccceEEEEeecCCchhheeeeeeccCCceEEEEeecc-------------------cCCCcchhHHHHHHHHhcc
Confidence            34456689999999999999999999886  89999998532                   1244455668777777633


Q ss_pred             CCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHH
Q psy4039         268 LPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFT  347 (588)
Q Consensus       268 l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~  347 (588)
                         -..|..+..+..+                            ..+-.+||+..+.||.+++.-+...++..++..++-
T Consensus        70 ---g~GiP~i~~y~~e----------------------------~~ynvlVMdLLGPsLEdLfnfC~R~ftmkTvLMLaD  118 (341)
T KOG1163|consen   70 ---GVGIPHIRHYGTE----------------------------KDYNVLVMDLLGPSLEDLFNFCSRRFTMKTVLMLAD  118 (341)
T ss_pred             ---CCCCchhhhhccc----------------------------cccceeeeeccCccHHHHHHHHhhhhhHHhHHHHHH
Confidence               3344333433333                            124689999999999999988777899999999999


Q ss_pred             HHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCC---CCccccccccccccCCccccchhHHhc
Q psy4039         348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKS---GLSMQYSSADIELGGNVALMAPEVALA  424 (588)
Q Consensus       348 ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~---~~~~~~~~~~~~~~GT~~Y~APE~l~~  424 (588)
                      |++.-++|+|.++.|||||||+|+|..-+  -.|..+.++|||+|+.+.+   ....++. .+....||..|.+--...+
T Consensus       119 Qml~RiEyvH~r~fiHRDIKPdNFLMGlg--rh~~kl~LIDFGLaKky~d~~t~~HIpyr-e~r~ltGTaRYASinAh~g  195 (341)
T KOG1163|consen  119 QMLSRIEYVHLRNFIHRDIKPDNFLMGLG--RHCNKLYLIDFGLAKKYRDIRTRQHIPYR-EDRNLTGTARYASINAHLG  195 (341)
T ss_pred             HHHHHHHHHHhhccccccCCccceeeccc--cccceEEEEeccchhhhccccccccCccc-cCCccceeeeehhhhhhhh
Confidence            99999999999999999999999999755  3457899999999998654   2222332 3346789999998777655


Q ss_pred             CCCCccCCCCCcCchhhHHHHHHHHhcCCCCCcccc---ccccccc-------cccCCCCCCccHHHHHHHHHhhhhCCC
Q psy4039         425 TPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSA---RNTDYEV-------NALPQLNTNVPEVMRRLVAKLLENDPS  494 (588)
Q Consensus       425 ~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~---~~~~~~~-------~~~~~~~~~~~~~l~~Li~~~L~~dP~  494 (588)
                      ..      .+..-|+=|+|.++.....|..||.+-.   ....++.       .....+...+|.++.-.+.-|=..-=+
T Consensus       196 ~e------qSRRDDmeSvgYvLmYfnrG~LPWQglka~tk~QKyEkI~EkK~s~~ie~LC~G~P~EF~myl~Y~R~L~F~  269 (341)
T KOG1163|consen  196 IE------QSRRDDMESVGYVLMYFNRGSLPWQGLKAATKKQKYEKISEKKMSTPIEVLCKGFPAEFAMYLNYCRGLGFE  269 (341)
T ss_pred             hh------hhhhhhhhhhcceeeeeecCCCcccccchhhHHHHHHHHHHhhcCCCHHHHhCCCcHHHHHHHHHHhhcCCC
Confidence            44      3356799999999999999999998832   1112211       112234567899998888888877777


Q ss_pred             CCCCHHHHHHHHh
Q psy4039         495 DRPSAELAATVCQ  507 (588)
Q Consensus       495 ~Rps~~e~l~~L~  507 (588)
                      +-|...-+-+...
T Consensus       270 E~Pdy~ylrqlFr  282 (341)
T KOG1163|consen  270 EKPDYMYLRQLFR  282 (341)
T ss_pred             CCCcHHHHHHHHH
Confidence            8888766555443

>KOG1165|consensus

Probab=99.88  E-value=6e-22  Score=196.95  Aligned_cols=257  Identities=15%  Similarity=0.190  Sum_probs=193.5

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      -.|.++++||+|+||+.+.|+.-  +++||||.=...                   ....++..|....+.|   ...++
T Consensus        28 ~hyrVGkKIGeGsFG~lf~G~Nl~nne~VAIKfEPrk-------------------S~APQLrdEYr~YKlL---~g~~G   85 (449)
T KOG1165|consen   28 PHYRVGKKIGEGSFGVLFLGKNLYNNEPVAIKFEPRK-------------------SEAPQLRDEYRTYKLL---GGTEG   85 (449)
T ss_pred             ccceeccccccCcceeeecccccccCceEEEEecccc-------------------CCcchHHHHHHHHHHH---cCCCC
Confidence            57999999999999999999886  899999984211                   1334455677777666   46788


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      |..+|.+-.+                            +.+-.+|||.++.||.+++.-++..|+..++..|+.||+.-+
T Consensus        86 IP~vYYFGqe----------------------------G~~NiLVidLLGPSLEDLFD~CgR~FSvKTV~miA~Qmi~ri  137 (449)
T KOG1165|consen   86 IPQVYYFGQE----------------------------GKYNILVIDLLGPSLEDLFDLCGRRFSVKTVAMIAKQMITRI  137 (449)
T ss_pred             CCceeeeccc----------------------------cchhhhhhhhhCcCHHHHHHHhcCcccHHhHHHHHHHHHHHH
Confidence            8877755333                            124678999999999999999988999999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCc---cccccccccccCCccccchhHHhcCCCCcc
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLS---MQYSSADIELGGNVALMAPEVALATPGLFS  430 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~---~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~  430 (588)
                      +|+|++.+|.|||||+|+||..-.......+.|+|||+|+.+.+...   .++.. .....||..||+=--..+..    
T Consensus       138 e~vH~k~LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGmAK~YrDp~TkqHIPYrE-~KSLsGTARYMSINTHlGrE----  212 (449)
T KOG1165|consen  138 EYVHEKDLIYRDIKPDNFLIGRPGTKDANVIHIIDFGMAKEYRDPKTKQHIPYRE-HKSLSGTARYMSINTHLGRE----  212 (449)
T ss_pred             HHHHhcceeecccCccceeecCCCCCCCceEEEEeccchhhhcCccccccCcccc-ccccccceeeeEeeccccch----
Confidence            99999999999999999999765554446889999999998655322   23322 23567999999977766655    


Q ss_pred             CCCCCcCchhhHHHHHHHHhcCCCCCcccc---ccccccc-------cccCCCCCCccHHHHHHHHHhhhhCCCCCCCHH
Q psy4039         431 FVNYSKSDAWTAGTVAYEIFGHDNPFYQSA---RNTDYEV-------NALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE  500 (588)
Q Consensus       431 ~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~---~~~~~~~-------~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~  500 (588)
                        .+.+-|+=|+|-+++..|.|..||.+-.   ....++.       .....+..++|.++..-+.-.=..+=.+-|..+
T Consensus       213 --QSRRDDLEaLGHvFmYFLRGsLPWQGLKA~tnK~kYeKIGe~Kr~T~i~~Lc~g~P~efa~Yl~yvR~L~F~E~PDYd  290 (449)
T KOG1165|consen  213 --QSRRDDLEALGHVFMYFLRGSLPWQGLKADTNKEKYEKIGETKRSTPIEVLCEGFPEEFATYLRYVRRLDFFETPDYD  290 (449)
T ss_pred             --hhhhhhHHHhhhhhhhhccCCCccccccCcchHHHHHHhccccccCCHHHHHhcCHHHHHHHHHHHHhcCcccCCCHH
Confidence              3456799999999999999999998731   1111111       111234567888888877776667777788877


Q ss_pred             HHHHHHhhh
Q psy4039         501 LAATVCQLY  509 (588)
Q Consensus       501 e~l~~L~~~  509 (588)
                      -+..++...
T Consensus       291 ylr~Lf~dv  299 (449)
T KOG1165|consen  291 YLRKLFDDV  299 (449)
T ss_pred             HHHHHHHHH
Confidence            666555433

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.86  E-value=5.3e-21  Score=193.42  Aligned_cols=262  Identities=25%  Similarity=0.332  Sum_probs=152.0

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhccccc-chhhhHHHHHhhhcCCCCCC
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRK-PLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~-~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      ..+..++.||.|+++.||.+++.  ++++|||++.-..  ......++.+.+|...... .....-.....       |-
T Consensus        12 r~l~~~~~i~~g~~~~v~~v~d~~t~~~~avkvf~~~~--~~~~~~~~~~~~e~l~~~~~~~~~~p~~a~~-------~~   82 (288)
T PF14531_consen   12 RTLVRGRIIGKGGFSIVFEVTDVETGEEFAVKVFLLPA--DASANEYEQLKEEQLAITLFPGVKNPKEAYR-------HL   82 (288)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEEESS--TTHTTHHHHHHHHHHGGGGSTT--SHHHHHH-------HH
T ss_pred             eEEEEccccccCCceEEEEEEEccCCceEEEEEEeccc--ccchHHHHHHHHHHHHhhhhccCCCHHHHHH-------hc
Confidence            35788899999999999999998  6999999985433  2222234444444322221 00001111111       11


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCC-c---eEEEEEecCCCcHHHHHHH---hcCC---CCHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRN-M---SLFILMKKYNTDLRNYLRE---RCAQ---LSMHER  342 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~-~---~l~lvme~~~gsL~~~L~~---~~~~---l~~~~~  342 (588)
                      .++.-++...-..             .|.....  +.+.+ .   +.+++|+.+.++|.+++..   ....   +....+
T Consensus        83 r~l~P~d~~~i~~-------------~~~~~~~--~~~~~~~~v~n~~~l~P~~~~dL~~~~~~l~~~~~~~~~l~~~ar  147 (288)
T PF14531_consen   83 RFLVPLDLLRIPG-------------KPPFFER--GPGQSIYWVLNRFLLMPRAQGDLQDLVEALFSRAQTHSPLAFAAR  147 (288)
T ss_dssp             -B---SEEEEETT-------------S-SEEEE--CETTEEEEEESEEEEEE--SEEHHHHHHHHHHHTTTSHHHHHHHH
T ss_pred             eEEeeeEEEEEcC-------------CCcceec--CCCCccceeehhhhccchhhhcHHHHHHHHhhcccccchhHHHHH
Confidence            1222222222110             0000000  00001 1   3688899988888888653   2212   333445


Q ss_pred             HHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHH
Q psy4039         343 VLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVA  422 (588)
Q Consensus       343 ~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l  422 (588)
                      ..+..|+++.+++||+.||+|+||||+|++++.+     +.++|+||+.....+.....        ...+..|.+||..
T Consensus       148 l~lT~Q~I~lvA~Lh~~GlVHgdi~~~nfll~~~-----G~v~Lg~F~~~~r~g~~~~~--------~~~~~~~~PPe~~  214 (288)
T PF14531_consen  148 LSLTVQMIRLVANLHSYGLVHGDIKPENFLLDQD-----GGVFLGDFSSLVRAGTRYRC--------SEFPVAFTPPELE  214 (288)
T ss_dssp             HHHHHHHHHHHHHHHHTTEEEST-SGGGEEE-TT-----S-EEE--GGGEEETTEEEEG--------GGS-TTTS-HHHH
T ss_pred             HHHHHHHHHHHHHHhhcceEecccceeeEEEcCC-----CCEEEcChHHHeecCceeec--------cCCCcccCChhhh
Confidence            6677999999999999999999999999999998     89999999987665442111        2245789999987


Q ss_pred             hcCCC--CccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccccccccCCCCCCccHHHHHHHHHhhhhCCCCC
Q psy4039         423 LATPG--LFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDR  496 (588)
Q Consensus       423 ~~~~~--~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~R  496 (588)
                      .....  .....++.+.|.|++|+++|.|+||+.||........... ... ...++|+.+++||..+|++||.+|
T Consensus       215 ~~~~~~~~~~~~~t~~~DaW~LG~~ly~lWC~~lPf~~~~~~~~~~~-~f~-~C~~~Pe~v~~LI~~lL~~~~~~R  288 (288)
T PF14531_consen  215 SCAGQFGQNNAPYTFATDAWQLGITLYSLWCGRLPFGLSSPEADPEW-DFS-RCRDMPEPVQFLIRGLLQRNPEDR  288 (288)
T ss_dssp             HHHTSCHHSEEEE-HHHHHHHHHHHHHHHHHSS-STCCCGGGSTSGG-GGT-TSS---HHHHHHHHHHT-SSGGGS
T ss_pred             hhhcccCcccceeeeccCHHHHHHHHHHHHHccCCCCCCCccccccc-cch-hcCCcCHHHHHHHHHHccCCcccC
Confidence            54311  0111234578999999999999999999986533322221 111 223789999999999999999988

>KOG0603|consensus

Probab=99.86  E-value=1.1e-22  Score=217.75  Aligned_cols=244  Identities=22%  Similarity=0.331  Sum_probs=188.4

Q ss_pred             eecccCceeEEEEEE-----CCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEE
Q psy4039         203 FIAKGTNAVVYEATF-----RGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVM  277 (588)
Q Consensus       203 ~IG~G~fG~Vy~a~~-----~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l  277 (588)
                      .+|+|+||.|+.+.-     .|.-||.|..++......               .+.....|..++..+   .+||.+|++
T Consensus         1 vlg~g~~gkvfLvrk~~g~da~~~yamkvl~k~t~~~~---------------~~~~t~~er~il~~~---~~~~f~v~l   62 (612)
T KOG0603|consen    1 VLGQGSYGKVFLVRKAGGADAGHLYAMKVLKKATLKVR---------------DRTHTKQERIILAFV---HNTPFLVKL   62 (612)
T ss_pred             CCCcCCCcchHHHHHhccccccchhhhhcccccccccc---------------cccccccHHHHHhhc---cCCCceeee
Confidence            379999999986543     277899998864322211               111233467777776   469999999


Q ss_pred             eeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q psy4039         278 HFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHL  356 (588)
Q Consensus       278 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yL  356 (588)
                      +..++.+.                            .+++++++. +|.|...+.+.. .+++.....+...++-|++++
T Consensus        63 hyafqt~~----------------------------kl~l~ld~~rgg~lft~l~~~~-~f~~~~~~~~~aelaLald~l  113 (612)
T KOG0603|consen   63 HYAFQTDG----------------------------KLYLILDFLRGGDLFTRLSKEV-MFDELDVAFYLAELALALDHL  113 (612)
T ss_pred             eeeecccc----------------------------chhHhhhhcccchhhhccccCC-chHHHHHHHHHHHHHHHHhhc
Confidence            98887642                            389999999 568888887654 788888999999999999999


Q ss_pred             HhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCCc
Q psy4039         357 NMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSK  436 (588)
Q Consensus       357 H~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~k  436 (588)
                      |+.+|+|||+|++||+++.+     |.+++.|||+++..-...         ..|||..|||||++.+        ....
T Consensus       114 h~l~iiyrd~k~enilld~~-----Ghi~~tdfglske~v~~~---------~~cgt~eymApEI~~g--------h~~a  171 (612)
T KOG0603|consen  114 HKLGIAYRDYKLENVLLLLE-----GHIKLTDFGLSKEAVKEK---------IACGTYEYRAPEIING--------HLSA  171 (612)
T ss_pred             chhHHHHhcccccceeeccc-----CccccCCchhhhHhHhhh---------hcccchhhhhhHhhhc--------cCCc
Confidence            99999999999999999998     899999999998743321         2289999999999983        2357


Q ss_pred             CchhhHHHHHHHHhcCCCCCccccccccccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCH--HHHHHHHhhhhhcCC
Q psy4039         437 SDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSA--ELAATVCQLYLWAPK  514 (588)
Q Consensus       437 sDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~--~e~l~~L~~~~~~~h  514 (588)
                      +|.||||++++||++|..||..+......  ......|...+..+++++..++..+|.+|.-.  +.+.++.+.-+...+
T Consensus       172 ~D~ws~gvl~felltg~~pf~~~~~~~Il--~~~~~~p~~l~~~a~~~~~~l~~r~p~nrLg~~~~~~~eik~h~f~~~i  249 (612)
T KOG0603|consen  172 ADWWSFGVLAFELLTGTLPFGGDTMKRIL--KAELEMPRELSAEARSLFRQLFKRNPENRLGAGPDGVDEIKQHEFFQSI  249 (612)
T ss_pred             ccchhhhhhHHHHhhCCCCCchHHHHHHh--hhccCCchhhhHHHHHHHHHHHhhCHHHHhccCcchhHHHhccchheee
Confidence            99999999999999999999883322222  22335677888999999999999999999765  566666665554446


Q ss_pred             ccc
Q psy4039         515 HWL  517 (588)
Q Consensus       515 ~w~  517 (588)
                      .|-
T Consensus       250 ~~~  252 (612)
T KOG0603|consen  250 DWN  252 (612)
T ss_pred             eHh
Confidence            665

>KOG1240|consensus

Probab=99.83  E-value=3.1e-21  Score=215.68  Aligned_cols=253  Identities=22%  Similarity=0.218  Sum_probs=171.8

Q ss_pred             CeEEeeeecccCceeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEE
Q psy4039         197 DIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVV  276 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~  276 (588)
                      ++...+.||++.|=+|.+|+++...|+||++-+.+..-..    +.+.+         ..+|++  ..   +.+|||++.
T Consensus        24 e~~~~~~LGstRFlKv~r~k~~eG~vVvKVFvk~~p~~sL----~~~~q---------rL~~ik--~~---l~~~pn~lP   85 (1431)
T KOG1240|consen   24 ECHYVENLGSTRFLKVARAKDREGLVVVKVFVKQDPTISL----RPFKQ---------RLEEIK--FA---LMKAPNCLP   85 (1431)
T ss_pred             ceeeecccCchhhhhhhhccCCCceEEEEEEeccCCCCCc----hHHHH---------HHHHHH--HH---hhcCCcccc
Confidence            7888899999999999999999767999998654322111    11111         122333  11   258999998


Q ss_pred             EeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q psy4039         277 MHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHL  356 (588)
Q Consensus       277 l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yL  356 (588)
                      +..+.....                            ..|+|=+|...+|.+.|..++ -+..-+..-|+.|++.||.-+
T Consensus        86 fqk~~~t~k----------------------------AAylvRqyvkhnLyDRlSTRP-FL~~iEKkWiaFQLL~al~qc  136 (1431)
T KOG1240|consen   86 FQKVLVTDK----------------------------AAYLVRQYVKHNLYDRLSTRP-FLVLIEKKWIAFQLLKALSQC  136 (1431)
T ss_pred             hHHHHHhhH----------------------------HHHHHHHHHhhhhhhhhccch-HHHHHHHHHHHHHHHHHHHHH
Confidence            876644321                            267777777788998887764 678888999999999999999


Q ss_pred             HhCCceeccCCCCcEEEcCCCCCCCCceeeecccccccc--CCCCccccccccccccCCccccchhHHhcCCCCcc----
Q psy4039         357 NMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTN--KSGLSMQYSSADIELGGNVALMAPEVALATPGLFS----  430 (588)
Q Consensus       357 H~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~--~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~----  430 (588)
                      |..||+|+|||.+||||++-     .-+.|+||..-+..  ..+....++.--.+..--..|+|||.+....+...    
T Consensus       137 H~~gVcHGDIKsENILiTSW-----NW~~LtDFAsFKPtYLPeDNPadf~fFFDTSrRRtCYiAPERFv~~~~~~~~~q~  211 (1431)
T KOG1240|consen  137 HKLGVCHGDIKSENILITSW-----NWLYLTDFASFKPTYLPEDNPADFTFFFDTSRRRTCYIAPERFVSALGKTSVGQD  211 (1431)
T ss_pred             HHcCccccccccceEEEeee-----chhhhhcccccCCccCCCCCcccceEEEecCCceeeecChHhhhccccccccCCc
Confidence            99999999999999999987     56789999876542  11111111100001112237999999875321111    


Q ss_pred             -CCCCCcCchhhHHHHHHHHhc-CCCCCccc----cccc--cccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHH
Q psy4039         431 -FVNYSKSDAWTAGTVAYEIFG-HDNPFYQS----ARNT--DYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA  502 (588)
Q Consensus       431 -~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~----~~~~--~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~  502 (588)
                       ..-.++.||||+||++.||++ |++||.-.    .+..  .........++   +..++.||..|++.||++|.++++.
T Consensus       212 ~~~L~paMDIFS~GCViaELf~Eg~PlF~LSQL~aYr~~~~~~~e~~Le~Ie---d~~~Rnlil~Mi~rdPs~RlSAedy  288 (1431)
T KOG1240|consen  212 APLLTPAMDIFSAGCVIAELFLEGRPLFTLSQLLAYRSGNADDPEQLLEKIE---DVSLRNLILSMIQRDPSKRLSAEDY  288 (1431)
T ss_pred             ccccChhhhhhhhhHHHHHHHhcCCCcccHHHHHhHhccCccCHHHHHHhCc---CccHHHHHHHHHccCchhccCHHHH
Confidence             112356799999999999998 57777432    1111  11111111121   2368999999999999999999997


Q ss_pred             HH
Q psy4039         503 AT  504 (588)
Q Consensus       503 l~  504 (588)
                      |+
T Consensus       289 L~  290 (1431)
T KOG1240|consen  289 LQ  290 (1431)
T ss_pred             HH
Confidence            76

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.83  E-value=1.2e-20  Score=182.03  Aligned_cols=154  Identities=19%  Similarity=0.161  Sum_probs=103.4

Q ss_pred             eeeecccCceeEEEEEEC-CeeEEEEEEecCCCCcchH-HHH---HHHhh-----hhcccccchhhhHHHHHhhhcCCCC
Q psy4039         201 GKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSH-AIL---KAMSK-----ELLPLRKPLRLNEDMLMNSVENLPP  270 (588)
Q Consensus       201 ~~~IG~G~fG~Vy~a~~~-g~~vAVK~i~~~~~~~~~~-~~~---k~~~~-----e~~~~~~~~~~~Ei~il~~l~~l~~  270 (588)
                      .+.||+|+||.||+|.+. |++||||+++......... ...   ..+..     ............|+.++..+    .
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l----~   77 (190)
T cd05147           2 NGCISTGKEANVYHATTANGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRL----V   77 (190)
T ss_pred             CCccccccceEEEEEECCCCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHH----H
Confidence            467999999999999986 8999999997532211110 000   00000     00000112224588999888    5


Q ss_pred             CCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCC-cHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4039         271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNT-DLRNYLRERCAQLSMHERVLLFTQL  349 (588)
Q Consensus       271 HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~g-sL~~~L~~~~~~l~~~~~~~i~~ql  349 (588)
                      |+++.....+...                              ..++||||++| ++...+... ..+++.++..++.|+
T Consensus        78 ~~~v~~p~~~~~~------------------------------~~~iVmE~i~g~~l~~~~~~~-~~~~~~~~~~i~~qi  126 (190)
T cd05147          78 TAGIPCPEPILLK------------------------------SHVLVMEFIGDDGWAAPRLKD-APLSESKARELYLQV  126 (190)
T ss_pred             HCCCCCCcEEEec------------------------------CCEEEEEEeCCCCCcchhhhc-CCCCHHHHHHHHHHH
Confidence            5554221111111                              14799999965 454443222 379999999999999


Q ss_pred             HHHHHHH-HhCCceeccCCCCcEEEcCCCCCCCCceeeecccccccc
Q psy4039         350 LEGVTHL-NMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTN  395 (588)
Q Consensus       350 ~~gL~yL-H~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~  395 (588)
                      +.+|.|+ |+.||+||||||+|||++.      +.++|+|||+|...
T Consensus       127 ~~~L~~l~H~~giiHrDlkP~NIli~~------~~v~LiDFG~a~~~  167 (190)
T cd05147         127 IQIMRILYQDCRLVHADLSEYNLLYHD------GKLYIIDVSQSVEH  167 (190)
T ss_pred             HHHHHHHHHhCCcccCCCCHHHEEEEC------CcEEEEEccccccC
Confidence            9999999 6899999999999999983      47999999999654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>KOG0606|consensus

Probab=99.82  E-value=1.2e-20  Score=211.06  Aligned_cols=147  Identities=27%  Similarity=0.363  Sum_probs=116.1

Q ss_pred             HHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCcc--------c--cccccccccCCccccch
Q psy4039         350 LEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSM--------Q--YSSADIELGGNVALMAP  419 (588)
Q Consensus       350 ~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~--------~--~~~~~~~~~GT~~Y~AP  419 (588)
                      +.+++|||+.||+|||+||+|.+|+.-     +.+|++|||+.+..--....        .  ..-.+...+|||.|.||
T Consensus       153 vla~Eylh~ygivhrdlkpdnllIT~m-----GhiKlTDfgLsk~GLms~atnl~eg~I~k~t~Ef~dKqvcgTPeyiaP  227 (1205)
T KOG0606|consen  153 VLAVEYLHSYGIVHRDLKPDNLLITSM-----GHIKLTDFGLSKKGLMSLATNLKEGHIEKDTHEFQDKQVCGTPEYIAP  227 (1205)
T ss_pred             hHHhHhhccCCeecCCCCCCcceeeec-----ccccccchhhhhhhhhhccchhhhcchHHHHHHhhhccccCCccccCh
Confidence            778999999999999999999999987     89999999998752110000        0  01122346899999999


Q ss_pred             hHHhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCccc-----cccccccccccCCCCCCccHHHHHHHHHhhhhCCC
Q psy4039         420 EVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQS-----ARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPS  494 (588)
Q Consensus       420 E~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~-----~~~~~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~  494 (588)
                      |++..+.      |+..+|+|++|+|+||.+.|..||+++     .....-....+++-...+++++++++.++|+.+|.
T Consensus       228 eVilrqg------ygkpvdwwamGiIlyeFLVgcvpffGdtpeelfg~visd~i~wpE~dea~p~Ea~dli~~LL~qnp~  301 (1205)
T KOG0606|consen  228 EVILRQG------YGKPVDWWAMGIILYEFLVGCVPFFGDTPEELFGQVISDDIEWPEEDEALPPEAQDLIEQLLRQNPL  301 (1205)
T ss_pred             hhhhhhc------cCCCccHHHHHHHHHHHheeeeeccCCCHHHHHhhhhhhhccccccCcCCCHHHHHHHHHHHHhChH
Confidence            9998765      557799999999999999999999997     33333334556666677899999999999999999


Q ss_pred             CCCCHHHHHHHHh
Q psy4039         495 DRPSAELAATVCQ  507 (588)
Q Consensus       495 ~Rps~~e~l~~L~  507 (588)
                      .|.-...++.+-+
T Consensus       302 ~Rlgt~ga~evk~  314 (1205)
T KOG0606|consen  302 CRLGTGGALEVKQ  314 (1205)
T ss_pred             hhcccchhhhhhh
Confidence            9976556666655

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.81  E-value=8e-20  Score=176.44  Aligned_cols=155  Identities=19%  Similarity=0.172  Sum_probs=107.3

Q ss_pred             eeeecccCceeEEEEEEC-CeeEEEEEEecCCCCcchH-HHHH---HHhhh-----hcccccchhhhHHHHHhhhcCCCC
Q psy4039         201 GKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSH-AILK---AMSKE-----LLPLRKPLRLNEDMLMNSVENLPP  270 (588)
Q Consensus       201 ~~~IG~G~fG~Vy~a~~~-g~~vAVK~i~~~~~~~~~~-~~~k---~~~~e-----~~~~~~~~~~~Ei~il~~l~~l~~  270 (588)
                      ...||+|+||.||+|.+. |+.||||+++......... ..+.   .+...     ..........+|...+.++    .
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l----~   77 (190)
T cd05145           2 NGCISTGKEANVYHARTGDGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRL----Y   77 (190)
T ss_pred             CceeecCCCcEEEEEEcCCCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHH----H
Confidence            468999999999999986 8999999997643211110 0000   00000     0000112234688888887    7


Q ss_pred             CCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCC-cHH-HHHHHhcCCCCHHHHHHHHHH
Q psy4039         271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNT-DLR-NYLRERCAQLSMHERVLLFTQ  348 (588)
Q Consensus       271 HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~g-sL~-~~L~~~~~~l~~~~~~~i~~q  348 (588)
                      |++|.....+...                              ..++||||++| ++. ..+...  .++..+...++.|
T Consensus        78 ~~~i~~p~~~~~~------------------------------~~~lVmE~~~g~~~~~~~l~~~--~~~~~~~~~i~~~  125 (190)
T cd05145          78 EAGVPVPEPILLK------------------------------KNVLVMEFIGDDGSPAPRLKDV--PLEEEEAEELYEQ  125 (190)
T ss_pred             hCCCCCceEEEec------------------------------CCEEEEEEecCCCchhhhhhhc--cCCHHHHHHHHHH
Confidence            8876433222111                              14799999965 333 334332  7888999999999


Q ss_pred             HHHHHHHHHh-CCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCC
Q psy4039         349 LLEGVTHLNM-HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKS  397 (588)
Q Consensus       349 l~~gL~yLH~-~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~  397 (588)
                      ++.++.++|+ +||+||||||+|||++ +     +.++|+|||+|+....
T Consensus       126 l~~~l~~lH~~~givHrDlkP~NIll~-~-----~~~~liDFG~a~~~~~  169 (190)
T cd05145         126 VVEQMRRLYQEAGLVHGDLSEYNILYH-D-----GKPYIIDVSQAVELDH  169 (190)
T ss_pred             HHHHHHHHHHhCCEecCCCChhhEEEE-C-----CCEEEEEcccceecCC
Confidence            9999999999 9999999999999998 4     6899999999976543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.80  E-value=3e-19  Score=175.58  Aligned_cols=185  Identities=12%  Similarity=0.075  Sum_probs=130.0

Q ss_pred             CCeEEeeeecccCceeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceE
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVV  275 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV  275 (588)
                      ++|...++||.|+||.||.....+..+|||.++......  ......+      .....+.+|+..+.++    .||+|.
T Consensus        31 ~~y~~~~~l~~~~f~~v~l~~~~~~~~iiKvf~~~~~~~--~~~~~~f------~~g~~~e~Ea~~l~rL----~~~GI~   98 (232)
T PRK10359         31 YNIKTIKVFRNIDDTKVSLIDTDYGKYILKVFAPKVKRT--ERFLKSF------VKGDYYENLIVQTDRV----RSEGLA   98 (232)
T ss_pred             CceEEEEEecCCCceEEEEEecCCCcEEEEEechhcCch--HHHHHhh------hhhHHHHHHHHHHHHH----HHCCCC
Confidence            889999999999999999987777899999986432211  1111111      1234467899999988    899999


Q ss_pred             EEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCC-cHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy4039         276 VMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNT-DLRNYLRERCAQLSMHERVLLFTQLLEGVT  354 (588)
Q Consensus       276 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~g-sL~~~L~~~~~~l~~~~~~~i~~ql~~gL~  354 (588)
                      .+.+++.+....                    ........+++|||++| +|.++.     .+++    ....+++.+|.
T Consensus        99 ~~~d~~~~~~~~--------------------~~~~~~~~~lvmEyi~G~tL~~~~-----~~~~----~~~~~i~~~l~  149 (232)
T PRK10359         99 SLNDFYLLAERK--------------------TLRYAHTYIMLIEYIEGVELNDMP-----EISE----DVKAKIKASIE  149 (232)
T ss_pred             cceEeeeecccc--------------------cccccCCeEEEEEEECCccHHHhh-----hccH----HHHHHHHHHHH
Confidence            998887653100                    00112248999999965 787763     2333    24669999999


Q ss_pred             HHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCC
Q psy4039         355 HLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY  434 (588)
Q Consensus       355 yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~  434 (588)
                      .+|+.|++|||+||+||+++.+     + ++|+|||..+........                 ..+.....      +.
T Consensus       150 ~lH~~gi~H~Dikp~Nili~~~-----g-i~liDfg~~~~~~e~~a~-----------------d~~vler~------y~  200 (232)
T PRK10359        150 SLHQHGMVSGDPHKGNFIVSKN-----G-LRIIDLSGKRCTAQRKAK-----------------DRIDLERH------YG  200 (232)
T ss_pred             HHHHcCCccCCCChHHEEEeCC-----C-EEEEECCCcccccchhhH-----------------HHHHHHhH------hc
Confidence            9999999999999999999876     6 999999988654321100                 11233222      23


Q ss_pred             CcCchhhHHHHHHHHh
Q psy4039         435 SKSDAWTAGTVAYEIF  450 (588)
Q Consensus       435 ~ksDVwS~Gvil~Ell  450 (588)
                      .++|+||||+++.-..
T Consensus       201 ~~~di~~lg~~~~~~~  216 (232)
T PRK10359        201 IKNEIKDLGYYLLIYK  216 (232)
T ss_pred             ccccccceeEeehHHH
Confidence            5799999999877543

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.79  E-value=4.6e-19  Score=171.03  Aligned_cols=197  Identities=10%  Similarity=0.033  Sum_probs=137.1

Q ss_pred             EEeeeecccCceeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEEe
Q psy4039         199 QIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMH  278 (588)
Q Consensus       199 ~~~~~IG~G~fG~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l~  278 (588)
                      .+...|++|+||+||.+...+.+++.+.+.....      .    .+   ......+.+|+++|+++   ..|++|.+++
T Consensus         5 ~~~~~l~~~~f~~v~~~~~~~~k~~~~~l~~~~~------~----~~---~~~~~l~~rE~~iL~~L---~~~~~vP~ll   68 (218)
T PRK12274          5 AVNEPLKSDTFGRILLVRGGERKFVRRDLSAAPW------W----LR---GVAWWLARREALALRQL---DGLPRTPRLL   68 (218)
T ss_pred             ccceeecCCCcceEEEeecCCceeeecccccchh------h----hh---hHHHHHHHHHHHHHHhc---CCCCCCCEEE
Confidence            4567899999999998888888898887631110      0    00   00122567899999988   3567888887


Q ss_pred             eeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCC-CcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q psy4039         279 FAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYN-TDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLN  357 (588)
Q Consensus       279 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~-gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yLH  357 (588)
                      ++.                                ..+++|||+. .+|.+.+..        ....++.|++.+|.++|
T Consensus        69 ~~~--------------------------------~~~lvmeyI~G~~L~~~~~~--------~~~~~~~qi~~~L~~lH  108 (218)
T PRK12274         69 HWD--------------------------------GRHLDRSYLAGAAMYQRPPR--------GDLAYFRAARRLLQQLH  108 (218)
T ss_pred             EEc--------------------------------CEEEEEeeecCccHHhhhhh--------hhHHHHHHHHHHHHHHH
Confidence            651                                1789999985 467543311        12357889999999999


Q ss_pred             hCCceeccC-CCCcEEEcCCCCCCCCceeeeccccccccCCCCcc-c-cccc------cccccCCccccchhHHhcCCCC
Q psy4039         358 MHRTAHRDL-KSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSM-Q-YSSA------DIELGGNVALMAPEVALATPGL  428 (588)
Q Consensus       358 ~~~IvHrDL-Kp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~-~-~~~~------~~~~~GT~~Y~APE~l~~~~~~  428 (588)
                      ++||+|||| ||+|||++.+     +.++|+|||+|......... . ....      ......++.|++|+-..-....
T Consensus       109 ~~GIvHrDL~kp~NILv~~~-----g~i~LIDFG~A~~~~~~~~~~r~L~~rDl~~llk~~~~y~~~~l~~~~~~~l~~~  183 (218)
T PRK12274        109 RCGVAHNDLAKEANWLVQED-----GSPAVIDFQLAVRGNPRARWMRLLAREDLRHLLKHKRMYCPAALTPVERRVLKRT  183 (218)
T ss_pred             HCcCccCCCCCcceEEEcCC-----CCEEEEECCCceecCCcchHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHhhhccc
Confidence            999999999 7999999876     78999999999865432210 0 0000      0012368899999976533210


Q ss_pred             ccCCCCCcCchhhHHHHHHHHhcCCCCCcccc
Q psy4039         429 FSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSA  460 (588)
Q Consensus       429 ~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~  460 (588)
                          .-...+.++.|+-+|.++|+..|+.++.
T Consensus       184 ----~~~~~~w~~~g~~~~~~~~~~~~~~~~~  211 (218)
T PRK12274        184 ----SWIRELWFATGKPVYRFVTRRVLHWEDN  211 (218)
T ss_pred             ----hhHHHHHHHhcchHHHHHhccCCccccC
Confidence                1134688899999999999999987643

>PRK10345 hypothetical protein; Provisional

Probab=99.78  E-value=1e-18  Score=170.85  Aligned_cols=145  Identities=14%  Similarity=0.128  Sum_probs=104.8

Q ss_pred             EEeeeecccCceeEEEEEEC-CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcC-CCCCCceEE
Q psy4039         199 QIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVEN-LPPHPNVVV  276 (588)
Q Consensus       199 ~~~~~IG~G~fG~Vy~a~~~-g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~-l~~HpNIV~  276 (588)
                      .-.+.||+|+||.||.  ++ ....+||++......                 ..+.+.+|+.+++.+.+ ...||||++
T Consensus         5 ~~~~~LG~G~~~~Vy~--hp~~~~k~IKv~~~~~~~-----------------~~~~~~rEi~~l~~L~~~~~~h~nIvr   65 (210)
T PRK10345          5 SEQSPLGTGRHRKCYA--HPEDAQRCIKIVYHRGDG-----------------GDKEIRRELKYYAHLSRRLIDWSGIPR   65 (210)
T ss_pred             CCcceecCCCceEEEE--CCCCcCeEEEEEeccccc-----------------hHHHHHHHHHHHHHhhccCCCCcccce
Confidence            3456899999999996  44 233479988542110                 12346789999998732 126899999


Q ss_pred             EeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEE-EEEecCC---CcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         277 MHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLF-ILMKKYN---TDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       277 l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~-lvme~~~---gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      +++++++..                      |   .+.++ +||||++   |+|.+++.+.  .+++.  ..++.|++.+
T Consensus        66 ~yg~~et~~----------------------g---~g~v~~~I~e~~G~~~~tL~~~l~~~--~~~e~--~~~~~~~L~~  116 (210)
T PRK10345         66 YYGTVETDC----------------------G---TGYVYDVIADFDGKPSITLTEFAEQC--RYEED--VAQLRQLLKK  116 (210)
T ss_pred             eeEEEEeCC----------------------C---CeEEEEEEecCCCCcchhHHHHHHcc--cccHh--HHHHHHHHHH
Confidence            999998732                      1   12344 7899954   7999999764  56666  3568888888


Q ss_pred             H-HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccc
Q psy4039         353 V-THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSS  392 (588)
Q Consensus       353 L-~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla  392 (588)
                      + +|||+++|+||||||+|||++...++. ..++|+||+-+
T Consensus       117 l~~yLh~~~IvhrDlKp~NILl~~~~~~~-~~~~LiDg~G~  156 (210)
T PRK10345        117 LKRYLLDNRIVTMELKPQNILCQRISESE-VIPVVCDNIGE  156 (210)
T ss_pred             HHHHHHHCCEeecCCCHHHEEEeccCCCC-CcEEEEECCCC
Confidence            8 999999999999999999998643222 58999994433

>KOG1033|consensus

Probab=99.77  E-value=1.4e-19  Score=190.82  Aligned_cols=178  Identities=26%  Similarity=0.362  Sum_probs=135.3

Q ss_pred             CceEEEEEecC-CCcHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeec
Q psy4039         312 NMSLFILMKKY-NTDLRNYLRER--CAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITD  388 (588)
Q Consensus       312 ~~~l~lvme~~-~gsL~~~L~~~--~~~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~D  388 (588)
                      ..++|+.|++| ..+|.++|..+  ....++.....++.|++.|+.|   ++.+|||+||.||+...+     ..+||+|
T Consensus       328 ~~~lyI~Mn~c~~~tledWl~rr~~~e~~s~s~~~~~~~q~~~~~~y---k~~ihrdlkp~nif~~~d-----~q~kIgD  399 (516)
T KOG1033|consen  328 KVYLYIQMNLCEKETLEDWLRRRRTGEERSLSLMLDIFKQIAPAVEY---KGLIHRDLKPSNIFFSDD-----DQLKIGD  399 (516)
T ss_pred             ccchhhhhhhhhhhhHHHHhhCCCcccccchhHHHHHHHhhccchhh---ccchhhhccccccccccc-----hhhhhhh
Confidence            44699999999 58999999743  3467888999999999999999   999999999999999887     6899999


Q ss_pred             cccccccCCCC-ccccccccccccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccccc
Q psy4039         389 FGSSYTNKSGL-SMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTDYE  466 (588)
Q Consensus       389 FGla~~~~~~~-~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~~~  466 (588)
                      ||+........ ..+.....+..+||..||+||.+.++.      ++.|+||||||+|++|++. -..+|.......++.
T Consensus       400 Fgl~ts~~~~~~~~~~~a~~t~~~gt~~YmsPEQi~g~~------y~~kvdIyaLGlil~EL~~~f~T~~er~~t~~d~r  473 (516)
T KOG1033|consen  400 FGLVTSQDKDETVAPAAASHTQQVGTLLYMSPEQIRGQQ------YSEKVDIYALGLILAELLIQFSTQFERIATLTDIR  473 (516)
T ss_pred             hhheeecccCCcccchhhhhhhcccccccCCHHHHhhhh------hhhhcchhhHHHHHHHHHHHhccHHHHHHhhhhhh
Confidence            99988765533 122222334678999999999999876      5689999999999999997 344444332223333


Q ss_pred             ccccC-CCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHH
Q psy4039         467 VNALP-QLNTNVPEVMRRLVAKLLENDPSDRPSAELAAT  504 (588)
Q Consensus       467 ~~~~~-~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~  504 (588)
                      ...+| .+..+.| +-.+|+.++|.+.|.+||++.+..-
T Consensus       474 ~g~ip~~~~~d~p-~e~~ll~~lls~~p~~RP~~~~~~~  511 (516)
T KOG1033|consen  474 DGIIPPEFLQDYP-EEYTLLQQLLSPSPEERPSAIEVAL  511 (516)
T ss_pred             cCCCChHHhhcCc-HHHHHHHHhcCCCcccCchHHHHhh
Confidence            33333 2223333 3468999999999999996655444

>KOG1023|consensus

Probab=99.76  E-value=3.7e-18  Score=183.15  Aligned_cols=205  Identities=22%  Similarity=0.225  Sum_probs=154.9

Q ss_pred             CCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHH
Q psy4039         269 PPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFT  347 (588)
Q Consensus       269 ~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~  347 (588)
                      +.|.|+.+++|.+.+.                            ...++|.+|| .|+|.+.+......+++.-...+++
T Consensus         4 l~h~n~~~f~g~~~~~----------------------------~~~~~i~~~c~rGsl~D~i~~~~~~~d~~F~~s~~r   55 (484)
T KOG1023|consen    4 LDHDNLNKFIGASVDG----------------------------PEMIVIWEYCSRGSLLDILSNEDIKLDYFFILSFIR   55 (484)
T ss_pred             cchhhhhhheeeEecC----------------------------CceEEEEeeecCccHHhHHhccccCccHHHHHHHHH
Confidence            3899999999999873                            1489999999 5999999998767899999999999


Q ss_pred             HHHHHHHHHHhCCc-eeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCC
Q psy4039         348 QLLEGVTHLNMHRT-AHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP  426 (588)
Q Consensus       348 ql~~gL~yLH~~~I-vHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~  426 (588)
                      ++++||.|||+..| .|+.+++.|.++|..     +.+||+|||+...........   ......-..-|.|||.+....
T Consensus        56 di~~Gl~ylh~s~i~~hg~l~s~nClvd~~-----w~lklt~~Gl~~~~~~~~~~~---~~~~~~~~~lw~aPellr~~~  127 (484)
T KOG1023|consen   56 DISKGLAYLHNSPIGYHGALKSSNCLVDSR-----WVLKLTDFGLNSLLEETAEPE---AHHPIRKALLWTAPELLRGAL  127 (484)
T ss_pred             HHHHHHHHHhcCcceeeeeeccccceeeee-----EEEEechhhhccccccccccc---ccchhHHHHhccCHHHhcccc
Confidence            99999999998766 999999999999998     899999999987764310000   000112344799999998753


Q ss_pred             CC-ccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccc-----------ccccccCCCC--CCccHHHHHHHHHhhhhC
Q psy4039         427 GL-FSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD-----------YEVNALPQLN--TNVPEVMRRLVAKLLEND  492 (588)
Q Consensus       427 ~~-~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~-----------~~~~~~~~~~--~~~~~~l~~Li~~~L~~d  492 (588)
                      .. .....+.++||||||++++|+++...||........           .....+|.++  ..+++++..++.+||..+
T Consensus       128 ~~~~~~~~~~~gdiYs~~ii~~ei~~r~~~~~~~~~~~~~~eii~~~~~~~~~~~rP~i~~~~e~~~~l~~l~~~cw~e~  207 (484)
T KOG1023|consen  128 SQSLESALTQKGDIYSFGIIMYEILFRSGPFDLRNLVEDPDEIILRVKKGGSNPFRPSIELLNELPPELLLLVARCWEEI  207 (484)
T ss_pred             cccccccccccCCeehHHHHHHHHHhccCccccccccCChHHHHHHHHhcCCCCcCcchhhhhhcchHHHHHHHHhcccC
Confidence            21 111134569999999999999999999976322211           1111222222  145667999999999999


Q ss_pred             CCCCCCHHHHHHHHhhh
Q psy4039         493 PSDRPSAELAATVCQLY  509 (588)
Q Consensus       493 P~~Rps~~e~l~~L~~~  509 (588)
                      |.+||+++++-..+...
T Consensus       208 P~~rPs~~~i~~~~~~~  224 (484)
T KOG1023|consen  208 PEKRPSIEQIRSKLLTI  224 (484)
T ss_pred             hhhCccHHHHHhhhhhh
Confidence            99999999988766543

>KOG1166|consensus

Probab=99.71  E-value=3.3e-17  Score=187.09  Aligned_cols=253  Identities=18%  Similarity=0.116  Sum_probs=164.2

Q ss_pred             ccccCCeEEeeeecccCceeEEEEEEC-CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCC
Q psy4039         192 DVKVDDIQIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPP  270 (588)
Q Consensus       192 ~i~~~~~~~~~~IG~G~fG~Vy~a~~~-g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~  270 (588)
                      ++.-+.|.+.+.||+|+||.||+|... |+.||+|+=+..  ....-++                  =..++.+|. ..-
T Consensus       694 ~~~~~~~~I~~e~G~g~y~~vy~a~~~~~~~~alK~e~P~--~~WEfYI------------------~~q~~~RLk-~~~  752 (974)
T KOG1166|consen  694 EVGGEKFCISKEIGEGSYGSVYVATHSNGKLVALKVEKPP--NPWEFYI------------------CLQVMERLK-PQM  752 (974)
T ss_pred             eecceeEEEEeeeccccceEEEEeecCCCcEEEEEeecCC--Cceeeee------------------hHHHHHhhc-hhh
Confidence            445567999999999999999999987 889999985321  1111000                  112233321 001


Q ss_pred             CCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCC-CcHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4039         271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYN-TDLRNYLRERCAQLSMHERVLLFTQL  349 (588)
Q Consensus       271 HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~-gsL~~~L~~~~~~l~~~~~~~i~~ql  349 (588)
                      -+-|+.+..++.            |.                ..-++|+||.+ |+|.+++... ..++|..+..+..||
T Consensus       753 ~~~~~~~~~a~~------------~~----------------~~S~lv~ey~~~Gtlld~~N~~-~~m~e~lv~~~~~qm  803 (974)
T KOG1166|consen  753 LPSIMHISSAHV------------FQ----------------NASVLVSEYSPYGTLLDLINTN-KVMDEYLVMFFSCQM  803 (974)
T ss_pred             hcchHHHHHHHc------------cC----------------CcceeeeeccccccHHHhhccC-CCCCchhhhHHHHHH
Confidence            223333332221            11                12688999996 9999999844 489999999999999


Q ss_pred             HHHHHHHHhCCceeccCCCCcEEEcCCCCC--CCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCC
Q psy4039         350 LEGVTHLNMHRTAHRDLKSDNILLDCSEDN--TCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG  427 (588)
Q Consensus       350 ~~gL~yLH~~~IvHrDLKp~NILld~~~~~--~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~  427 (588)
                      +.-+++||..+|||+||||+|.||.....+  ....++|+|||.+-...--..   ...-...++|-.+-.+|+..+.+.
T Consensus       804 l~ive~lH~~~IIHgDiKPDNfll~~~~~~~~~~~~l~lIDfG~siDm~lfp~---~~~F~~~~~td~f~C~EM~~grpW  880 (974)
T KOG1166|consen  804 LRIVEHLHAMGIIHGDIKPDNFLLRREICADSDSKGLYLIDFGRSIDMKLFPD---GTKFKAVWHTDLFDCIEMREGRPW  880 (974)
T ss_pred             HHHHHHHHhcceecccCCcceeEeecccCCCCcccceEEEecccceeeeEcCC---CcEEeeeeccccchhHHHhcCCCC
Confidence            999999999999999999999999532211  125799999999854321000   011124668889999999998873


Q ss_pred             CccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccccccccCCCCCCccHH-HHHHHHHhhhhCCCCCCCHHHHHHHH
Q psy4039         428 LFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEV-MRRLVAKLLENDPSDRPSAELAATVC  506 (588)
Q Consensus       428 ~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~-l~~Li~~~L~~dP~~Rps~~e~l~~L  506 (588)
                            +-.+|.|.++.+++.||.|+.--   ..+..... ....++..+-.+ ..++...+|..|-..=|...++...+
T Consensus       881 ------tYq~DyfGlAa~~h~mLFG~y~q---~~~g~~~~-~~~~~~Ry~~~~~W~~~F~~lLN~~~~~~p~l~~lr~~~  950 (974)
T KOG1166|consen  881 ------TYQIDYFGLAATVHVMLFGKYME---VKNGSSWM-VKTNFPRYWKRDMWNKFFDLLLNPDCDTLPNLQELRTEL  950 (974)
T ss_pred             ------chhhhhHHHHHHHHHHHHHHHHH---hcCCccee-ccccchhhhhHHHHHHHHHHHhCcCcccchhHHHHHHHH
Confidence                  45699999999999999997542   11111111 111122222222 45677778885554446666666655


Q ss_pred             h
Q psy4039         507 Q  507 (588)
Q Consensus       507 ~  507 (588)
                      +
T Consensus       951 ~  951 (974)
T KOG1166|consen  951 E  951 (974)
T ss_pred             H
Confidence            4

>smart00090 RIO RIO-like kinase

Probab=99.71  E-value=1.6e-17  Score=165.91  Aligned_cols=158  Identities=21%  Similarity=0.167  Sum_probs=106.7

Q ss_pred             CeEEeeeecccCceeEEEEE-E--CCeeEEEEEEecCCCCcchHHHH----HHHh-hh--hcccccchhhhHHHHHhhhc
Q psy4039         197 DIQIGKFIAKGTNAVVYEAT-F--RGVEYALKMMFNYSAASNSHAIL----KAMS-KE--LLPLRKPLRLNEDMLMNSVE  266 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~-~--~g~~vAVK~i~~~~~~~~~~~~~----k~~~-~e--~~~~~~~~~~~Ei~il~~l~  266 (588)
                      .|.+.+.||+|+||.||+|. +  .|+.||||+++............    ..+. ..  ........+.+|+.++..+ 
T Consensus        29 ~~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~~L-  107 (237)
T smart00090       29 LSAIGGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQRL-  107 (237)
T ss_pred             hHHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHHHH-
Confidence            47788899999999999998 3  38999999997533211110000    0000 00  0000112346799999888 


Q ss_pred             CCCCCC--ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCC-cHHHHHHHhcCCCCHHHHH
Q psy4039         267 NLPPHP--NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNT-DLRNYLRERCAQLSMHERV  343 (588)
Q Consensus       267 ~l~~Hp--NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~g-sL~~~L~~~~~~l~~~~~~  343 (588)
                         .+.  .+.+++++                           +     ..++||||++| +|....... ..+...++.
T Consensus       108 ---~~~~i~~p~~~~~---------------------------~-----~~~lV~E~~~g~~L~~~~~~~-~~~~~~~~~  151 (237)
T smart00090      108 ---YEAGVPVPKPIAW---------------------------R-----RNVLVMEFIGGDGLPAPRLKD-VEPEEEEEF  151 (237)
T ss_pred             ---HhcCCCCCeeeEe---------------------------c-----CceEEEEEecCCccccccccc-CCcchHHHH
Confidence               332  22233321                           0     15799999965 565544222 256677788


Q ss_pred             HHHHHHHHHHHHHHhCC-ceeccCCCCcEEEcCCCCCCCCceeeeccccccccCC
Q psy4039         344 LLFTQLLEGVTHLNMHR-TAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKS  397 (588)
Q Consensus       344 ~i~~ql~~gL~yLH~~~-IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~  397 (588)
                      .++.|++.++.+||++| |+||||||+||+++ +     +.++|+|||.|.....
T Consensus       152 ~i~~qi~~~l~~LH~~g~iiH~Dikp~NIli~-~-----~~i~LiDFg~a~~~~~  200 (237)
T smart00090      152 ELYDDILEEMRKLYKEGELVHGDLSEYNILVH-D-----GKVVIIDVSQSVELDH  200 (237)
T ss_pred             HHHHHHHHHHHHHHhcCCEEeCCCChhhEEEE-C-----CCEEEEEChhhhccCC
Confidence            99999999999999999 99999999999998 4     6899999999875433

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.70  E-value=8.9e-17  Score=157.12  Aligned_cols=141  Identities=22%  Similarity=0.321  Sum_probs=106.9

Q ss_pred             eeecccCceeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEEeeee
Q psy4039         202 KFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAF  281 (588)
Q Consensus       202 ~~IG~G~fG~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l~~~~  281 (588)
                      +.||+|++|.||+|.+.+..|+||+............  ..       .....+.+|+.++..+    .|+||.....++
T Consensus         2 ~~l~~G~~~~vy~~~~~~~~~~vK~~~~~~~~~~~~~--~~-------~~~~~~~~E~~~l~~l----~~~~i~~p~~~~   68 (211)
T PRK14879          2 KLIKRGAEAEIYLGDFLGIKAVIKWRIPKRYRHPELD--ER-------IRRERTRREARIMSRA----RKAGVNVPAVYF   68 (211)
T ss_pred             cccccCceEEEEEEeeCCCceEEEEeCCcCCcChHHH--HH-------HHHHHHHHHHHHHHHH----HHCCCCCCeEEE
Confidence            5799999999999999999999998753222111100  00       1223456789999887    788876555444


Q ss_pred             eccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC
Q psy4039         282 TDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHR  360 (588)
Q Consensus       282 ~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yLH~~~  360 (588)
                      .+..                            ..+++|||+ +++|.+++....    + .+..++.+++.+|.++|+.+
T Consensus        69 ~~~~----------------------------~~~lv~e~~~G~~L~~~~~~~~----~-~~~~i~~~i~~~l~~lH~~~  115 (211)
T PRK14879         69 VDPE----------------------------NFIIVMEYIEGEPLKDLINSNG----M-EELELSREIGRLVGKLHSAG  115 (211)
T ss_pred             EeCC----------------------------CCEEEEEEeCCcCHHHHHHhcc----H-HHHHHHHHHHHHHHHHHhCC
Confidence            4321                            268999999 569999886542    2 88899999999999999999


Q ss_pred             ceeccCCCCcEEEcCCCCCCCCceeeeccccccc
Q psy4039         361 TAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYT  394 (588)
Q Consensus       361 IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~  394 (588)
                      ++|||++|+|||++ +     +.++|+|||+++.
T Consensus       116 i~H~Dl~p~Nil~~-~-----~~~~liDf~~a~~  143 (211)
T PRK14879        116 IIHGDLTTSNMILS-G-----GKIYLIDFGLAEF  143 (211)
T ss_pred             cccCCCCcccEEEE-C-----CCEEEEECCcccC
Confidence            99999999999998 4     6799999998854

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.68  E-value=1.9e-16  Score=153.44  Aligned_cols=137  Identities=23%  Similarity=0.264  Sum_probs=99.7

Q ss_pred             eecccCceeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEEeeeee
Q psy4039         203 FIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFT  282 (588)
Q Consensus       203 ~IG~G~fG~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l~~~~~  282 (588)
                      .||+|+||.||+|.+.+..|+||..............         ......+.+|+.++..+    .|+++.....++.
T Consensus         1 ~ig~G~~~~vy~~~~~~~~~viK~~~~~~~~~~~~~~---------~~~~~~~~~E~~~l~~l----~~~~i~~p~~~~~   67 (199)
T TIGR03724         1 LIAKGAEAIIYLGDFLGLKAVIKERVPKSYRHPELDE---------RIRRERTRNEARLLSRA----RKAGVNTPVVYDV   67 (199)
T ss_pred             CCCCCceEEEEEeecCCccEEEEEecCCcCcCchHHH---------HHHHHHHHHHHHHHHHH----HHCCCCCCEEEEE
Confidence            4899999999999999999999996432211111100         01223456799999887    6665432222222


Q ss_pred             ccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCc
Q psy4039         283 DFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRT  361 (588)
Q Consensus       283 ~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yLH~~~I  361 (588)
                      +..                            ..+++|||+ +++|.+++....  .      .++.+++.+|.+||+.|+
T Consensus        68 ~~~----------------------------~~~lv~e~~~g~~l~~~~~~~~--~------~~~~~i~~~l~~lH~~gi  111 (199)
T TIGR03724        68 DPD----------------------------NKTIVMEYIEGKPLKDVIEEGN--D------ELLREIGRLVGKLHKAGI  111 (199)
T ss_pred             ECC----------------------------CCEEEEEEECCccHHHHHhhcH--H------HHHHHHHHHHHHHHHCCe
Confidence            210                            268999999 568988876531  1      889999999999999999


Q ss_pred             eeccCCCCcEEEcCCCCCCCCceeeeccccccc
Q psy4039         362 AHRDLKSDNILLDCSEDNTCPQLVITDFGSSYT  394 (588)
Q Consensus       362 vHrDLKp~NILld~~~~~~~~~vkL~DFGla~~  394 (588)
                      +|||++|+||+++ +     +.++++|||+++.
T Consensus       112 ~H~Dl~~~Nil~~-~-----~~~~liDfg~a~~  138 (199)
T TIGR03724       112 VHGDLTTSNIIVR-D-----DKLYLIDFGLGKY  138 (199)
T ss_pred             ecCCCCcceEEEE-C-----CcEEEEECCCCcC
Confidence            9999999999998 4     6899999999865

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.67  E-value=1.6e-16  Score=154.34  Aligned_cols=152  Identities=18%  Similarity=0.129  Sum_probs=103.2

Q ss_pred             eEEeeeecccCceeEEEEEEC-CeeEEEEEEecCCCCcchHHHHHHHhh-----hhcccccchhhhHHHHHhhhcCCCCC
Q psy4039         198 IQIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAILKAMSK-----ELLPLRKPLRLNEDMLMNSVENLPPH  271 (588)
Q Consensus       198 ~~~~~~IG~G~fG~Vy~a~~~-g~~vAVK~i~~~~~~~~~~~~~k~~~~-----e~~~~~~~~~~~Ei~il~~l~~l~~H  271 (588)
                      |.+.+.||+|+||.||+|... |+.||||+++.................     ...........+|+.++..+    .|
T Consensus        17 ~~~~~~i~~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l----~~   92 (198)
T cd05144          17 ESLGNQIGVGKESDVYLALDPDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALKAL----YE   92 (198)
T ss_pred             hhcCCccccCcceEEEEEEcCCCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHHHH----HH
Confidence            677889999999999999885 899999998643211000000000000     00111222356688888887    56


Q ss_pred             Cce--EEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCC-CcHHHHHHHhcCCCCHHHHHHHHHH
Q psy4039         272 PNV--VVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYN-TDLRNYLRERCAQLSMHERVLLFTQ  348 (588)
Q Consensus       272 pNI--V~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~-gsL~~~L~~~~~~l~~~~~~~i~~q  348 (588)
                      +++  ...++.                                ...+++|||+. ++|.....       ......++.+
T Consensus        93 ~~i~v~~~~~~--------------------------------~~~~lv~e~~~g~~L~~~~~-------~~~~~~~~~~  133 (198)
T cd05144          93 EGFPVPKPIDW--------------------------------NRHAVVMEYIDGVELYRVRV-------LEDPEEVLDE  133 (198)
T ss_pred             cCCCCCceeec--------------------------------CCceEEEEEeCCcchhhccc-------cccHHHHHHH
Confidence            542  222211                                12589999995 57765432       1345678899


Q ss_pred             HHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCC
Q psy4039         349 LLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKS  397 (588)
Q Consensus       349 l~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~  397 (588)
                      +++++.++|+.||+||||||+||+++.+     +.++|+|||+|.....
T Consensus       134 i~~~l~~lh~~gi~H~Dl~p~Nill~~~-----~~~~liDfg~~~~~~~  177 (198)
T cd05144         134 ILEEIVKAYKHGIIHGDLSEFNILVDDD-----EKIYIIDWPQMVSTDH  177 (198)
T ss_pred             HHHHHHHHHHCCCCcCCCCcccEEEcCC-----CcEEEEECCccccCCC
Confidence            9999999999999999999999999876     7899999999965543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.66  E-value=3.8e-16  Score=174.26  Aligned_cols=142  Identities=20%  Similarity=0.225  Sum_probs=106.9

Q ss_pred             eEEeeeecccCceeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEE
Q psy4039         198 IQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVM  277 (588)
Q Consensus       198 ~~~~~~IG~G~fG~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l  277 (588)
                      |...+.||+|+||+||+|.+.+..+++|+..........      ...   ......+.+|+.+++.+    +|+||+..
T Consensus       335 ~~~~~~iG~G~~g~Vy~~~~~~~~~v~k~~~~~~~~~~~------~~~---~~~~~~~~~E~~~l~~l----~~~~i~~p  401 (535)
T PRK09605        335 KIPDHLIGKGAEADIKKGEYLGRDAVIKERVPKGYRHPE------LDE---RLRTERTRAEARLLSEA----RRAGVPTP  401 (535)
T ss_pred             cCccceeccCCcEEEEEEeecCccceeEEEecccccchh------HHH---HHHHHHHHHHHHHHHhh----cccCCCee
Confidence            455789999999999999998887877765321111100      000   01234566799999987    89998876


Q ss_pred             eeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q psy4039         278 HFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHL  356 (588)
Q Consensus       278 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yL  356 (588)
                      ..++.+..                            ..++||||+ +++|.+++.         ....++.+++++|.||
T Consensus       402 ~~~~~~~~----------------------------~~~lv~E~~~g~~L~~~l~---------~~~~~~~~i~~~L~~l  444 (535)
T PRK09605        402 VIYDVDPE----------------------------EKTIVMEYIGGKDLKDVLE---------GNPELVRKVGEIVAKL  444 (535)
T ss_pred             EEEEEeCC----------------------------CCEEEEEecCCCcHHHHHH---------HHHHHHHHHHHHHHHH
Confidence            65554421                            268999999 579998875         3467899999999999


Q ss_pred             HhCCceeccCCCCcEEEcCCCCCCCCceeeecccccccc
Q psy4039         357 NMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTN  395 (588)
Q Consensus       357 H~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~  395 (588)
                      |+.||+||||||+|||++ +     +.++|+|||+|+..
T Consensus       445 H~~giiHrDlkp~NILl~-~-----~~~~liDFGla~~~  477 (535)
T PRK09605        445 HKAGIVHGDLTTSNFIVR-D-----DRLYLIDFGLGKYS  477 (535)
T ss_pred             HhCCCccCCCChHHEEEE-C-----CcEEEEeCcccccC
Confidence            999999999999999994 4     58999999999663

>KOG0590|consensus

Probab=99.64  E-value=2.7e-17  Score=183.87  Aligned_cols=257  Identities=20%  Similarity=0.211  Sum_probs=188.0

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC---CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR---GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPH  271 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~---g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~H  271 (588)
                      ...|.+.+.||+|+|+.|-.....   ...+|+|.+.......+               .......|..+-..+   .+|
T Consensus        19 ~~~~~~~~~ig~gs~~~~~~~~~~~~~~~~~a~~~~s~~~~~~~---------------~~~~i~~e~~~~~~~---s~h   80 (601)
T KOG0590|consen   19 NSQYKLSRSIGKGSFSSSALASNSRDPESSSATKPISIPPKSED---------------SSEHIDTETDIQKKL---SKH   80 (601)
T ss_pred             cccccccccccccccchhhhhhhcCCCcceeeccCCCCCCCccc---------------hhhhcCccccccccc---ccc
Confidence            466888888999999999887764   45677776633221111               111222355555544   349


Q ss_pred             CceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHH-HHhcCCCCHHHHHHHHHHH
Q psy4039         272 PNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYL-RERCAQLSMHERVLLFTQL  349 (588)
Q Consensus       272 pNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L-~~~~~~l~~~~~~~i~~ql  349 (588)
                      +|++++++...+..                            ..++.+++. ++++.+.+ .......+...+..++.|+
T Consensus        81 ~n~~~~~~~~~~~~----------------------------~~~~~~~~s~g~~~f~~i~~~~~~~~~~~~~~~~~~ql  132 (601)
T KOG0590|consen   81 SNTVHMIEPSSSPR----------------------------SYLLSLSYSDGGSLFSKISHPDSTGTSSSSASRYLPQL  132 (601)
T ss_pred             ccccccCCccCCCc----------------------------ccccccCcccccccccccccCCccCCCCcchhhhhhhh
Confidence            99999997765521                            377888888 56888877 3332257778888999999


Q ss_pred             HHHHHHHH-hCCceeccCCCCcEEEcCCCCCCCC-ceeeeccccccccCC-CCccccccccccccC-CccccchhHHhcC
Q psy4039         350 LEGVTHLN-MHRTAHRDLKSDNILLDCSEDNTCP-QLVITDFGSSYTNKS-GLSMQYSSADIELGG-NVALMAPEVALAT  425 (588)
Q Consensus       350 ~~gL~yLH-~~~IvHrDLKp~NILld~~~~~~~~-~vkL~DFGla~~~~~-~~~~~~~~~~~~~~G-T~~Y~APE~l~~~  425 (588)
                      ..++.|+| +.++.||||||+|.+++..     + .++++|||+|..+.. ....   ......+| ++.|+|||...+.
T Consensus       133 ~s~l~~~H~~~~~~h~~ikP~n~~l~~s-----~~~l~~~df~~At~~~~~~g~~---~~~~~~~g~s~~y~a~E~~~~~  204 (601)
T KOG0590|consen  133 NSGLSYLHPENGVTHRDIKPSNSLLDES-----GSALKIADFGLATAYRNKNGAE---RSLKDRCGSSPPYGAPEHLSGK  204 (601)
T ss_pred             ccCccccCcccccccCCCCCccchhccC-----CCcccCCCchhhccccccCCcc---eeeecccCCCCCCCCcccccch
Confidence            99999999 9999999999999999988     5 899999999987655 2111   11124667 9999999998774


Q ss_pred             CCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccc----cc---cccCCCCCCccHHHHHHHHHhhhhCCCCCCC
Q psy4039         426 PGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY----EV---NALPQLNTNVPEVMRRLVAKLLENDPSDRPS  498 (588)
Q Consensus       426 ~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~----~~---~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps  498 (588)
                      ..     ..+..|+||.|+++.-+++|..||.........    ..   ......+..++....+++.+++..+|..|.+
T Consensus       205 ~~-----~~~~~d~~S~g~~l~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~k~l~~~~~~r~s  279 (601)
T KOG0590|consen  205 AY-----RGPSVDVWSLGIVLSAMLTGELPWDFPSRKDGRYSSWKSNKGRFTQLPWNSISDQAHDLLHKILKENPSNRLS  279 (601)
T ss_pred             hh-----cCCCcccccccccccccccCCCCccccccccccceeecccccccccCccccCChhhhhcccccccCCchhccc
Confidence            21     345689999999999999999998764222111    11   1123445678888999999999999999999


Q ss_pred             HHHHHHHHhhhhhcCCccccC
Q psy4039         499 AELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       499 ~~e~l~~L~~~~~~~h~w~~~  519 (588)
                      .+++..         ++|+..
T Consensus       280 ~~~~~~---------d~~~~~  291 (601)
T KOG0590|consen  280 IEELKL---------DNWLSS  291 (601)
T ss_pred             cccccc---------cccccc
Confidence            999888         999875

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.60  E-value=3e-15  Score=143.40  Aligned_cols=151  Identities=20%  Similarity=0.118  Sum_probs=93.5

Q ss_pred             eeeecccCceeEEEEEEC-CeeEEEEEEecCCCCcchHHH-H--HHHhhhh----cccccchhhhHHHHHhhhcCCCCCC
Q psy4039         201 GKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAI-L--KAMSKEL----LPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       201 ~~~IG~G~fG~Vy~a~~~-g~~vAVK~i~~~~~~~~~~~~-~--k~~~~e~----~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      ++.||+|+||+||+|.+. +++||||++.+.......... +  .......    ..........|...+..+    .+.
T Consensus         2 ~~~lg~G~~g~Vy~a~~~~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l----~~~   77 (187)
T cd05119           2 GGPIGTGKEADVYLALDGDGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRL----YEA   77 (187)
T ss_pred             CcccccccceeEEEEECCCCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHH----HHc
Confidence            567999999999999988 899999998653222111000 0  0000000    000001112344555444    222


Q ss_pred             --ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCC-cHH-HHHHHhcCCCCHHHHHHHHHH
Q psy4039         273 --NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNT-DLR-NYLRERCAQLSMHERVLLFTQ  348 (588)
Q Consensus       273 --NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~g-sL~-~~L~~~~~~l~~~~~~~i~~q  348 (588)
                        .+.+.+++                                ...+++|||++| ++. ..+...  ... .++..++.+
T Consensus        78 ~~~~~~~~~~--------------------------------~~~~lv~e~~~g~~~~~~~l~~~--~~~-~~~~~~~~~  122 (187)
T cd05119          78 GVPVPKPIDL--------------------------------NRHVLVMEFIGGDGIPAPRLKDV--RLL-EDPEELYDQ  122 (187)
T ss_pred             CCCCCceEec--------------------------------CCCEEEEEEeCCCCccChhhhhh--hhc-ccHHHHHHH
Confidence              12222211                                026899999954 221 222221  111 678899999


Q ss_pred             HHHHHHHHHh-CCceeccCCCCcEEEcCCCCCCCCceeeeccccccccC
Q psy4039         349 LLEGVTHLNM-HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNK  396 (588)
Q Consensus       349 l~~gL~yLH~-~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~  396 (588)
                      ++.++.++|. .+|+||||||+||+++ +     +.++|+|||.+....
T Consensus       123 ~~~~l~~lh~~~~ivH~Dl~p~Nili~-~-----~~~~liDfg~a~~~~  165 (187)
T cd05119         123 ILELMRKLYREAGLVHGDLSEYNILVD-D-----GKVYIIDVPQAVEID  165 (187)
T ss_pred             HHHHHHHHhhccCcCcCCCChhhEEEE-C-----CcEEEEECccccccc
Confidence            9999999999 9999999999999999 5     689999999996543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=99.59  E-value=1.1e-14  Score=145.73  Aligned_cols=148  Identities=19%  Similarity=0.172  Sum_probs=104.2

Q ss_pred             eeec-ccCceeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhh--cccccchhhhHHHHHhhhcCCCCCCce--EE
Q psy4039         202 KFIA-KGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKEL--LPLRKPLRLNEDMLMNSVENLPPHPNV--VV  276 (588)
Q Consensus       202 ~~IG-~G~fG~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~--~~~~~~~~~~Ei~il~~l~~l~~HpNI--V~  276 (588)
                      ..|| .||.|+||.+...+..++||.+.....      +.+-...+.  .......+.+|+.++..+    .|++|  ++
T Consensus        37 ~~lg~~~g~gtv~~v~~~~~~~vlk~~~r~~~------i~kv~~~~~~~~~~~~~r~~rE~~ll~~L----~~~gi~vP~  106 (239)
T PRK01723         37 RVVGSAKGRGTTWFVQTPGVNWVLRHYRRGGL------IGKLSKDRYLFTGLERTRAFAEFRLLAQL----YEAGLPVPR  106 (239)
T ss_pred             ceeecCCCCccEEEEEeCCceEEEEEeeEcch------HHhhhhhcccccchhhhHHHHHHHHHHHH----HhCCCCCce
Confidence            3576 788888888888899999999843221      011111111  122445667899999998    77764  56


Q ss_pred             EeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCC--CcHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy4039         277 MHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYN--TDLRNYLRERCAQLSMHERVLLFTQLLEGVT  354 (588)
Q Consensus       277 l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~--gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~  354 (588)
                      .+++.....                      +  .....++|||++.  .+|.+++...  .+++.    .+.+++.+|.
T Consensus       107 pl~~~~~~~----------------------~--~~~~~~lV~e~l~G~~~L~~~l~~~--~l~~~----~~~~i~~~l~  156 (239)
T PRK01723        107 PIAARVVRH----------------------G--LFYRADILIERIEGARDLVALLQEA--PLSEE----QWQAIGQLIA  156 (239)
T ss_pred             eEeeeeeec----------------------C--cceeeeEEEEecCCCCCHHHHHhcC--CCCHH----HHHHHHHHHH
Confidence            666543311                      1  0112469999995  4899888653  55654    3678999999


Q ss_pred             HHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccc
Q psy4039         355 HLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYT  394 (588)
Q Consensus       355 yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~  394 (588)
                      +||++||+||||||+|||++.+     +.++|+|||.+..
T Consensus       157 ~lH~~GI~HrDlkp~NILv~~~-----~~v~LIDfg~~~~  191 (239)
T PRK01723        157 RFHDAGVYHADLNAHNILLDPD-----GKFWLIDFDRGEL  191 (239)
T ss_pred             HHHHCCCCCCCCCchhEEEcCC-----CCEEEEECCCccc
Confidence            9999999999999999999876     6899999998865

>KOG0601|consensus

Probab=99.50  E-value=3.7e-14  Score=152.59  Aligned_cols=252  Identities=19%  Similarity=0.205  Sum_probs=181.4

Q ss_pred             CCeEEeeeecc--cCceeEEEEEE--C--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCC
Q psy4039         196 DDIQIGKFIAK--GTNAVVYEATF--R--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLP  269 (588)
Q Consensus       196 ~~~~~~~~IG~--G~fG~Vy~a~~--~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~  269 (588)
                      ..+.+.+.+|.  |.+|.||.+.+  .  +..+|+|.=...- .              .+.....-.+|+.--..+   .
T Consensus       114 ~~~~~~~~~g~~~g~~~s~~~~~~~~~~s~~~~a~k~s~~p~-s--------------~p~~~~~k~~~~~s~~~i---~  175 (524)
T KOG0601|consen  114 QRFPISSRTGSLPGSKGSVFKSRCTNSESPHKFAVKKSKIPF-S--------------PPLDSKRKLREFLSHHKI---D  175 (524)
T ss_pred             hhcccccccccCCCCCceeecccCCcccCCcccccccccCCC-C--------------Cccccccccchhhccccc---C
Confidence            55667788999  99999999888  3  7889999731100 0              001111223344444333   4


Q ss_pred             CCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4039         270 PHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQL  349 (588)
Q Consensus       270 ~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql  349 (588)
                      .|+|.|+.+..+..                            .+.+|+-+|+|+.+|.++......-++....+.++.+.
T Consensus       176 ~~~~~v~~~~~~e~----------------------------~~~lfiqtE~~~~sl~~~~~~~~~~~p~~~l~~~~~~~  227 (524)
T KOG0601|consen  176 SHENPVRDSPAWEG----------------------------SGILFIQTELCGESLQSYCHTPCNFLPDNLLWNSLRDW  227 (524)
T ss_pred             ccccccccCccccc----------------------------CCcceeeeccccchhHHhhhcccccCCchhhhhHHhhh
Confidence            79999986655544                            23499999999999999998766468889999999999


Q ss_pred             HH----HHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcC
Q psy4039         350 LE----GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALAT  425 (588)
Q Consensus       350 ~~----gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~  425 (588)
                      ..    ||.++|+.+|+|-|+||.||++..+.    ..++++|||+...+..+.............|..-|++||+..+.
T Consensus       228 ~~~~~~al~~~hs~~~~~~~~kp~~i~~~~~~----~s~~~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l  303 (524)
T KOG0601|consen  228 LSRDVTALSHLHSNNIVHDDLKPANIFTTSDW----TSCKLTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLNGL  303 (524)
T ss_pred             hhcccccccccCCCcccccccchhheeccccc----ceeecCCcceeEEccCCccccceeeeecCCCCceEeChhhhccc
Confidence            99    99999999999999999999998763    57899999999887764432222222333577799999999765


Q ss_pred             CCCccCCCCCcCchhhHHHHHHHHhcCCCCCccc--cccccccc-cccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHH
Q psy4039         426 PGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQS--ARNTDYEV-NALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA  502 (588)
Q Consensus       426 ~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~--~~~~~~~~-~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~  502 (588)
                      .       +...|+||+|.++.+..++..+....  ........ ....++....+.++...+..|++.+|..|++.+.+
T Consensus       304 ~-------~~~~di~sl~ev~l~~~l~~~~~~~g~~~~W~~~r~~~ip~e~~~~~s~~l~~~~~~~~d~~~~~~~~~q~~  376 (524)
T KOG0601|consen  304 A-------TFASDIFSLGEVILEAILGSHLPSVGKNSSWSQLRQGYIPLEFCEGGSSSLRSVTSQMLDEDPRLRLTAQIL  376 (524)
T ss_pred             c-------chHhhhcchhhhhHhhHhhcccccCCCCCCccccccccCchhhhcCcchhhhhHHHHhcCcchhhhhHHHHH
Confidence            3       45789999999999999886654332  11111111 12223344556677779999999999999999998


Q ss_pred             HH
Q psy4039         503 AT  504 (588)
Q Consensus       503 l~  504 (588)
                      .+
T Consensus       377 ~~  378 (524)
T KOG0601|consen  377 TA  378 (524)
T ss_pred             hc
Confidence            88

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.48  E-value=1.8e-13  Score=124.65  Aligned_cols=133  Identities=22%  Similarity=0.144  Sum_probs=102.1

Q ss_pred             EeeeecccCceeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEEee
Q psy4039         200 IGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHF  279 (588)
Q Consensus       200 ~~~~IG~G~fG~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l~~  279 (588)
                      +.+.||+|.++.||++...+..++||.+.....                   ...+.+|+.+++.+...  .+++.+++.
T Consensus         2 ~~~~i~~g~~~~v~~~~~~~~~~~iK~~~~~~~-------------------~~~~~~e~~~~~~l~~~--~~~~p~~~~   60 (155)
T cd05120           2 SIKLLKGGLTNRVYLLGTKDEDYVLKINPSREK-------------------GADREREVAILQLLARK--GLPVPKVLA   60 (155)
T ss_pred             cceecccccccceEEEEecCCeEEEEecCCCCc-------------------hhHHHHHHHHHHHHHHc--CCCCCeEEE
Confidence            356799999999999999888999999743110                   23456788888888321  157777776


Q ss_pred             eeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCC-cHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh
Q psy4039         280 AFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNT-DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNM  358 (588)
Q Consensus       280 ~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~g-sL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yLH~  358 (588)
                      ++...                            ...+++|||+.| .+..+        +......++.+++++|.+||.
T Consensus        61 ~~~~~----------------------------~~~~~v~e~~~g~~~~~~--------~~~~~~~~~~~~~~~l~~lh~  104 (155)
T cd05120          61 SGESD----------------------------GWSYLLMEWIEGETLDEV--------SEEEKEDIAEQLAELLAKLHQ  104 (155)
T ss_pred             EcCCC----------------------------CccEEEEEecCCeecccC--------CHHHHHHHHHHHHHHHHHHhC
Confidence            65431                            138999999954 44332        556677889999999999998


Q ss_pred             C---CceeccCCCCcEEEcCCCCCCCCceeeeccccccc
Q psy4039         359 H---RTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYT  394 (588)
Q Consensus       359 ~---~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~  394 (588)
                      .   +++|+|+||+||+++..     +.++++|||.++.
T Consensus       105 ~~~~~i~H~Dl~~~Nil~~~~-----~~~~l~Df~~~~~  138 (155)
T cd05120         105 LPLLVLCHGDLHPGNILVDDG-----KILGIIDWEYAGY  138 (155)
T ss_pred             CCceEEEecCCCcceEEEECC-----cEEEEEecccccC
Confidence            4   79999999999999975     6899999999865

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=99.44  E-value=6.4e-13  Score=144.24  Aligned_cols=160  Identities=20%  Similarity=0.111  Sum_probs=104.1

Q ss_pred             eeecccCceeEEEEEEC-CeeEEEEEEecCCCCc--chHHHHHHHh-------------------hhhcc--cccchhhh
Q psy4039         202 KFIAKGTNAVVYEATFR-GVEYALKMMFNYSAAS--NSHAILKAMS-------------------KELLP--LRKPLRLN  257 (588)
Q Consensus       202 ~~IG~G~fG~Vy~a~~~-g~~vAVK~i~~~~~~~--~~~~~~k~~~-------------------~e~~~--~~~~~~~~  257 (588)
                      +.||.|++|.||+|+++ |+.||||+.++.....  .+..+++.+.                   .|...  ..+-++.+
T Consensus       123 ~plasaSigQVh~A~l~~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~Eldf~~  202 (437)
T TIGR01982       123 KPLAAASIAQVHRARLVDGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRRELDLRR  202 (437)
T ss_pred             cceeeeehhheEEEEecCCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHHHHHCHHH
Confidence            57999999999999986 8999999986532111  1111111110                   11100  11224666


Q ss_pred             HHHHHhhhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCC-CcHHHHHHHhcCC
Q psy4039         258 EDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYN-TDLRNYLRERCAQ  336 (588)
Q Consensus       258 Ei~il~~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~-gsL~~~L~~~~~~  336 (588)
                      |...+..+....+|.+-|.+-.+|.+.+                           ...++||||++ ++|.++.......
T Consensus       203 Ea~n~~~~~~~~~~~~~v~vP~v~~~~~---------------------------~~~vLvmE~i~G~~L~~~~~~~~~~  255 (437)
T TIGR01982       203 EAANASELGENFKNDPGVYVPEVYWDRT---------------------------SERVLTMEWIDGIPLSDIAALDEAG  255 (437)
T ss_pred             HHHHHHHHHHhcCCCCCEEeCCEehhhc---------------------------CCceEEEEeECCcccccHHHHHhcC
Confidence            7777777654444444445544443311                           12689999994 5888776543212


Q ss_pred             CCHHHHHHHHHHHHH-HHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccC
Q psy4039         337 LSMHERVLLFTQLLE-GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNK  396 (588)
Q Consensus       337 l~~~~~~~i~~ql~~-gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~  396 (588)
                      .+   ...++.+++. .+..+|..|++|+|+||.||+++.+     +.++++|||++....
T Consensus       256 ~~---~~~ia~~~~~~~l~ql~~~g~~H~D~hPgNilv~~~-----g~i~liDfG~~~~l~  308 (437)
T TIGR01982       256 LD---RKALAENLARSFLNQVLRDGFFHADLHPGNIFVLKD-----GKIIALDFGIVGRLS  308 (437)
T ss_pred             CC---HHHHHHHHHHHHHHHHHhCCceeCCCCcccEEECCC-----CcEEEEeCCCeeECC
Confidence            32   3456666665 4788999999999999999999877     789999999986654

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>KOG1266|consensus

Probab=99.33  E-value=1.1e-12  Score=131.19  Aligned_cols=198  Identities=21%  Similarity=0.233  Sum_probs=131.6

Q ss_pred             CCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh---cCCCCHHHHHHH
Q psy4039         270 PHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER---CAQLSMHERVLL  345 (588)
Q Consensus       270 ~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~---~~~l~~~~~~~i  345 (588)
                      .|.|||+++.++.+..                       +.......++.||+ .|+|.++|+..   ...+....-.++
T Consensus       125 vHsnlvkfH~yw~d~K-----------------------~~e~~rviFiteymssgs~~~fLkrt~~~~~a~~~~~wkkw  181 (458)
T KOG1266|consen  125 VHSNLVKFHKYWTDKK-----------------------YEEKPRVIFITEYMSSGSLKQFLKRTKKNQKALFQKAWKKW  181 (458)
T ss_pred             HHHHHHHHHHhhcccc-----------------------cccccceEEEEecccchhHHHHHHHHHHhhhhhhHHHHHHH
Confidence            5999999999998853                       11222477889999 69999999864   346888888999


Q ss_pred             HHHHHHHHHHHHhC--CceeccCCCCcEEEcCCCCCCCCceeeeccccccccCC--CCccccccccccccCCccccchhH
Q psy4039         346 FTQLLEGVTHLNMH--RTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKS--GLSMQYSSADIELGGNVALMAPEV  421 (588)
Q Consensus       346 ~~ql~~gL~yLH~~--~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~--~~~~~~~~~~~~~~GT~~Y~APE~  421 (588)
                      +.||+.||.|||+.  .|+|+++..+-|++..+     +-+||+   +.-....  ............-.|-++|.|||.
T Consensus       182 ~tqIlsal~yLhs~~PpiihgnlTc~tifiq~n-----gLIkig---~~ap~s~h~s~~~~~~~Ek~~~~~~~g~~a~~s  253 (458)
T KOG1266|consen  182 CTQILSALSYLHSCDPPIIHGNLTCDTIFIQHN-----GLIKIG---SVAPDSTHPSVNSTREAEKSVNTSLPGFSAPES  253 (458)
T ss_pred             HHHHHhhhhhhhccCCccccCCcchhheeecCC-----ceEEec---ccCccccchhhhhhhHhhhhccccCCccccCCc
Confidence            99999999999985  79999999999999966     566653   3221111  000001111112346789999997


Q ss_pred             HhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHH
Q psy4039         422 ALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAEL  501 (588)
Q Consensus       422 l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e  501 (588)
                      -....      .+.++|||+||....||..+..--.+.......+......+-..-..--++++.+|++..|..||+|.+
T Consensus       254 g~~tn------~~~a~dIy~fgmcAlemailEiq~tnseS~~~~ee~ia~~i~~len~lqr~~i~kcl~~eP~~rp~ar~  327 (458)
T KOG1266|consen  254 GTTTN------TTGASDIYKFGMCALEMAILEIQSTNSESKVEVEENIANVIIGLENGLQRGSITKCLEGEPNGRPDARL  327 (458)
T ss_pred             Ccccc------cccchhhhhhhHHHHHHHHheeccCCCcceeehhhhhhhheeeccCccccCcCcccccCCCCCCcchhh
Confidence            54322      345799999999999999876532221111111110000000000112367899999999999999999


Q ss_pred             HHH
Q psy4039         502 AAT  504 (588)
Q Consensus       502 ~l~  504 (588)
                      ++-
T Consensus       328 llf  330 (458)
T KOG1266|consen  328 LLF  330 (458)
T ss_pred             hhc
Confidence            776

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=99.30  E-value=8.3e-12  Score=137.51  Aligned_cols=167  Identities=17%  Similarity=0.209  Sum_probs=99.2

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCc--chHHHHHHH-------------------hhhh--cc
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAAS--NSHAILKAM-------------------SKEL--LP  249 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~--~~~~~~k~~-------------------~~e~--~~  249 (588)
                      +.+|+. +.||+|++|.||+|+++  |+.||||++++.-...  .+...++.+                   ..|.  ..
T Consensus       119 F~~fd~-~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~~v~e~~~~l  197 (537)
T PRK04750        119 FDDFDI-KPLASASIAQVHFARLKDNGREVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPREVVAEFEKTL  197 (537)
T ss_pred             HHhcCh-hhhcCCCccEEEEEEECCCCCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHH
Confidence            366776 78999999999999996  7999999997532110  111111111                   0010  00


Q ss_pred             cccchhhhHHHHHhhhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCC-CcHHH
Q psy4039         250 LRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYN-TDLRN  328 (588)
Q Consensus       250 ~~~~~~~~Ei~il~~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~-gsL~~  328 (588)
                      ..+-++.+|...+.++.+...+.+.|.+-.+|.+.+                           ...++||||+. +.+.+
T Consensus       198 ~~ElD~~~Ea~N~~~~~~~f~~~~~v~VP~v~~d~s---------------------------t~~VLvmE~i~G~~l~d  250 (537)
T PRK04750        198 HDELDLMREAANASQLRRNFEDSDMLYVPEVYWDYC---------------------------SETVMVMERMYGIPVSD  250 (537)
T ss_pred             HHhhCHHHHHHHHHHHHHHccCCCCeecceeecccC---------------------------CCceEEEeeecCccHHh
Confidence            112234455555555433333444444444443311                           13789999994 57876


Q ss_pred             HH--HHhcC---CCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCC
Q psy4039         329 YL--RERCA---QLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKS  397 (588)
Q Consensus       329 ~L--~~~~~---~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~  397 (588)
                      +-  ...+.   .+.+..+..++.|+       ...|++|+|+||.||+++.+.... +.+++.|||++...+.
T Consensus       251 ~~~l~~~g~d~~~la~~~v~~~~~Qi-------f~~GffHaDpHPGNIlv~~~g~~~-~~i~llDFGivg~l~~  316 (537)
T PRK04750        251 VAALRAAGTDMKLLAERGVEVFFTQV-------FRDGFFHADMHPGNIFVSYDPPEN-PRYIALDFGIVGSLNK  316 (537)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHH-------HhCCeeeCCCChHHeEEecCCCCC-CeEEEEecceEEECCH
Confidence            43  22211   23334444444544       358999999999999998772221 4899999999977654

>KOG0606|consensus

Probab=99.27  E-value=2.2e-12  Score=145.52  Aligned_cols=181  Identities=24%  Similarity=0.308  Sum_probs=140.1

Q ss_pred             EEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeecccccc
Q psy4039         315 LFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSY  393 (588)
Q Consensus       315 l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~  393 (588)
                      ++++|+|+ +++|...|+.-+ ..+.+-+...+..+..+++|||...+.|||++|.|+|+..+     +..+++|||...
T Consensus       879 ~~L~~~~~~~~~~~Skl~~~~-~~saepaRs~i~~~vqs~e~L~s~~r~h~~~~p~~~l~~~~-----gh~~l~~~~t~~  952 (1205)
T KOG0606|consen  879 LPLVGHYLNGGDLPSKLHNSG-CLSAEPARSPILERVQSLESLHSSLRKHRDLKPDSLLIAYD-----GHRPLTDFGTLS  952 (1205)
T ss_pred             cchhhHHhccCCchhhhhcCC-CcccccccchhHHHHhhhhccccchhhcccccccchhhccc-----CCcccCcccccc
Confidence            89999999 478998888765 67878888888899999999999999999999999999888     889999998443


Q ss_pred             ccCC-----CC-----------------ccccc----cccccccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHH
Q psy4039         394 TNKS-----GL-----------------SMQYS----SADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAY  447 (588)
Q Consensus       394 ~~~~-----~~-----------------~~~~~----~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~  447 (588)
                      ...-     +.                 .....    .......||+.|.|||...+..      ....+|+|++|++++
T Consensus       953 ~vg~~~p~~~~sg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~t~~~laPe~~lg~~------hgs~ad~~~~g~~l~ 1026 (1205)
T KOG0606|consen  953 KVGLIPPTTDLSGPSSSGTPRRLSRSERRPQLSADEARRKHAVVGTPDYLAPEILLGRR------HGSAADWWSSGVCLF 1026 (1205)
T ss_pred             ccccccCcCCcccccccCccccccccccccccccchhhccccccCCCcccCCccccccc------CCCcchhhhhhhhhh
Confidence            2111     00                 00000    1123457999999999998776      346799999999999


Q ss_pred             HHhcCCCCCcccccccccc-----ccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHh
Q psy4039         448 EIFGHDNPFYQSARNTDYE-----VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       448 ElltG~~Pf~~~~~~~~~~-----~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~  507 (588)
                      |.++|.+||........+.     ...++.-+...+.++++++...+..+|.+|..+.....+-.
T Consensus      1027 e~l~g~pp~na~tpq~~f~ni~~~~~~~p~g~~~~s~~aq~~~~~ll~~~~~qr~~a~~~~e~k~ 1091 (1205)
T KOG0606|consen 1027 EVLTGIPPFNAETPQQIFENILNRDIPWPEGPEEGSYEAQDLINRLLTEEPTQRLGAKGAAEVKG 1091 (1205)
T ss_pred             hhhcCCCCCCCcchhhhhhccccCCCCCCCCccccChhhhhhhhhhhccCchhccCccccccccc
Confidence            9999999998754433332     23445556677889999999999999999999885555445

>cd05151 ChoK Choline Kinase (ChoK)

Probab=99.19  E-value=6e-11  Score=111.47  Aligned_cols=127  Identities=14%  Similarity=0.102  Sum_probs=89.6

Q ss_pred             eeeecccCceeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceE-EEee
Q psy4039         201 GKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVV-VMHF  279 (588)
Q Consensus       201 ~~~IG~G~fG~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV-~l~~  279 (588)
                      .+.|+.|.++.||++...+..|+||+......                  ....+.+|+.+++.+    .+.+++ +++.
T Consensus         3 ~~~l~~G~~~~vy~~~~~~~~~~lK~~~~~~~------------------~~~~~~~E~~~l~~l----~~~~~~P~~~~   60 (170)
T cd05151           3 ISPLKGGMTNKNYRVEVANKKYVVRIPGNGTE------------------LLINRENEAENSKLA----AEAGIGPKLYY   60 (170)
T ss_pred             eeecCCcccCceEEEEECCeEEEEEeCCCCcc------------------cccCHHHHHHHHHHH----HHhCCCCceEE
Confidence            35789999999999999999999999642110                  112345688888877    333333 4443


Q ss_pred             eeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCC-cHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh
Q psy4039         280 AFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNT-DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNM  358 (588)
Q Consensus       280 ~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~g-sL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yLH~  358 (588)
                      +..+                              .-++|||+++| ++...         ......++.+++++|..||+
T Consensus        61 ~~~~------------------------------~~~lv~e~i~G~~l~~~---------~~~~~~~~~~l~~~l~~LH~  101 (170)
T cd05151          61 FDPE------------------------------TGVLITEFIEGSELLTE---------DFSDPENLEKIAKLLKKLHS  101 (170)
T ss_pred             EeCC------------------------------CCeEEEEecCCCccccc---------cccCHHHHHHHHHHHHHHhC
Confidence            3211                              14689999965 44322         01123467899999999999


Q ss_pred             CCc-----eeccCCCCcEEEcCCCCCCCCceeeeccccccc
Q psy4039         359 HRT-----AHRDLKSDNILLDCSEDNTCPQLVITDFGSSYT  394 (588)
Q Consensus       359 ~~I-----vHrDLKp~NILld~~~~~~~~~vkL~DFGla~~  394 (588)
                      .++     +|+|++|+||+++ +     +.++++|||.+..
T Consensus       102 ~~~~~~~~~HgD~~~~Nil~~-~-----~~~~liDf~~a~~  136 (170)
T cd05151         102 SPLPDLVPCHNDLLPGNFLLD-D-----GRLWLIDWEYAGM  136 (170)
T ss_pred             CCCCCceeecCCCCcCcEEEE-C-----CeEEEEecccccC
Confidence            875     9999999999998 4     5789999998854

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=99.19  E-value=1.2e-10  Score=112.35  Aligned_cols=153  Identities=20%  Similarity=0.207  Sum_probs=99.2

Q ss_pred             eeeecccCceeEEEEEEC--------CeeEEEEEEecCCCCc-chHHHHHHHhh-h--h-cccccchhh----hHHHHHh
Q psy4039         201 GKFIAKGTNAVVYEATFR--------GVEYALKMMFNYSAAS-NSHAILKAMSK-E--L-LPLRKPLRL----NEDMLMN  263 (588)
Q Consensus       201 ~~~IG~G~fG~Vy~a~~~--------g~~vAVK~i~~~~~~~-~~~~~~k~~~~-e--~-~~~~~~~~~----~Ei~il~  263 (588)
                      ...||.|-=+.||.|...        +..+|||+.+..-... +....++.-.+ +  . .....+.+.    +|+..|+
T Consensus         2 ~g~i~~GKEa~V~~~~~~~~~~~~~~~~~~avKi~r~~~~~Fk~~~~y~~~~~rf~~~~~k~~~~~~~~~wa~kE~r~L~   81 (197)
T cd05146           2 NGCISTGKESVVLHANGGSNETEQVIPTECAIKVFKTTLNEFKNRDKYIKDDYRFKDRFSKLNPRKIIRMWAEKEMHNLK   81 (197)
T ss_pred             CCccccCcceEEEEEecCcccccccCCceEEEEEEeccceeEcChhhhccCCcccccCcCCCCHHHHHHHHHHHHHHHHH
Confidence            357999999999999765        3699999986432211 11111110000 0  0 001122233    7999999


Q ss_pred             hhcCCC-CCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCc-H-HHHHHHhcCCCCHH
Q psy4039         264 SVENLP-PHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTD-L-RNYLRERCAQLSMH  340 (588)
Q Consensus       264 ~l~~l~-~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gs-L-~~~L~~~~~~l~~~  340 (588)
                      ++.... .-|.++   ++ .                               .-++||||++++ + ...+++.  .++..
T Consensus        82 rl~~~Gv~vP~pi---~~-~-------------------------------~~~lvME~Ig~~~~~~~~Lkd~--~~~~~  124 (197)
T cd05146          82 RMQKAGIPCPEVV---VL-K-------------------------------KHVLVMSFIGDDQVPAPKLKDA--KLNDE  124 (197)
T ss_pred             HHHHcCCCCCeEE---Ee-c-------------------------------CCEEEEEEcCCCCccchhhhcc--ccCHH
Confidence            885432 344443   32 1                               157899999652 2 2223332  45666


Q ss_pred             HHHHHHHHHHHHHHHH-HhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccC
Q psy4039         341 ERVLLFTQLLEGVTHL-NMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNK  396 (588)
Q Consensus       341 ~~~~i~~ql~~gL~yL-H~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~  396 (588)
                      +...+..+++.+|..| |..||||+||++.|||+++      +.+.|+|||.|....
T Consensus       125 ~~~~i~~~i~~~l~~l~H~~glVHGDLs~~NIL~~~------~~v~iIDF~qav~~~  175 (197)
T cd05146         125 EMKNAYYQVLSMMKQLYKECNLVHADLSEYNMLWHD------GKVWFIDVSQSVEPT  175 (197)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEEC------CcEEEEECCCceeCC
Confidence            7788899999999999 8999999999999999974      478999999885543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>KOG0601|consensus

Probab=99.19  E-value=2.6e-11  Score=130.89  Aligned_cols=248  Identities=19%  Similarity=0.170  Sum_probs=168.9

Q ss_pred             ccccCCeEEeeeecccCceeEEEEEEC---CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCC
Q psy4039         192 DVKVDDIQIGKFIAKGTNAVVYEATFR---GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENL  268 (588)
Q Consensus       192 ~i~~~~~~~~~~IG~G~fG~Vy~a~~~---g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l  268 (588)
                      .....+|.....||.|.|+.|+.+..+   +..|++|...+.....         .      ....-..|+.+...+   
T Consensus       261 s~~~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l~~~---------~------~di~sl~ev~l~~~l---  322 (524)
T KOG0601|consen  261 SCKLTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLNGLATF---------A------SDIFSLGEVILEAIL---  322 (524)
T ss_pred             eeecCCcceeEEccCCccccceeeeecCCCCceEeChhhhccccch---------H------hhhcchhhhhHhhHh---
Confidence            345577899999999999999998755   6789999875422211         1      111223355555544   


Q ss_pred             CCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHH
Q psy4039         269 PPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFT  347 (588)
Q Consensus       269 ~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~  347 (588)
                      ..|.+++..+..+..                            ....|+=.||| ++++...+. ....+++...+.+..
T Consensus       323 ~~~~~~~g~~~~W~~----------------------------~r~~~ip~e~~~~~s~~l~~~-~~~~~d~~~~~~~~~  373 (524)
T KOG0601|consen  323 GSHLPSVGKNSSWSQ----------------------------LRQGYIPLEFCEGGSSSLRSV-TSQMLDEDPRLRLTA  373 (524)
T ss_pred             hcccccCCCCCCccc----------------------------cccccCchhhhcCcchhhhhH-HHHhcCcchhhhhHH
Confidence            468888876544433                            33466778899 555554442 222688899999999


Q ss_pred             HHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCcccc-chhHHhcCC
Q psy4039         348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALM-APEVALATP  426 (588)
Q Consensus       348 ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~-APE~l~~~~  426 (588)
                      |++.++.++|+..++|+|+||+||++..+.    +..+++|||++........        ...++-.++ .+|++....
T Consensus       374 q~~~~l~~i~s~~~~~~d~~psni~i~~~~----~~~~~~~~~~~t~~~~~~~--------~~~~~~r~~p~~~~~~e~~  441 (524)
T KOG0601|consen  374 QILTALNVIHSKLFVHLDVKPSNILISNDG----FFSKLGDFGCWTRLAFSSG--------VFHHIDRLYPIAEILLEDY  441 (524)
T ss_pred             HHHhccccccchhhhcccccccceeeccch----hhhhccccccccccceecc--------cccccccccccchhhcccc
Confidence            999999999999999999999999998753    5678999999864221110        122333455 355554332


Q ss_pred             CCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHH
Q psy4039         427 GLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAAT  504 (588)
Q Consensus       427 ~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~  504 (588)
                      .     +..+.|++|||..+.|.+++.+--........+.....+..+ ....+++.+.+.++..++..||.+.+...
T Consensus       442 ~-----~~~~~~~~sl~~~~~e~~~~~~ls~~~~~~~~i~~~~~p~~~-~~~~~~q~~~kv~~~~~~~~~~l~~~l~~  513 (524)
T KOG0601|consen  442 P-----HLSKADIFSLGLSVDEAITGSPLSESGVQSLTIRSGDTPNLP-GLKLQLQVLLKVMINPDRKRRPSAVELSL  513 (524)
T ss_pred             c-----cccccccccccccccccccCcccCcccccceeeecccccCCC-chHHhhhhhhhhhcCCccccchhhhhhcc
Confidence            1     457899999999999999987543333333333333333333 34488899999999999999999887655

>KOG3087|consensus

Probab=99.09  E-value=1.6e-09  Score=101.22  Aligned_cols=151  Identities=23%  Similarity=0.285  Sum_probs=106.5

Q ss_pred             EeeeecccCceeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCC-CCCceEEEe
Q psy4039         200 IGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLP-PHPNVVVMH  278 (588)
Q Consensus       200 ~~~~IG~G~fG~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~-~HpNIV~l~  278 (588)
                      ...+|-+|+=+.|+++.+.|+.+.||.=+....-+...   .      ..+.+++-.+|++++.++..+. .-|-++   
T Consensus        11 ~l~likQGAEArv~~~~~~Ge~~iIK~Rf~K~YRHP~L---D------~kLtr~Rt~~Ear~l~k~~~~GI~~P~l~---   78 (229)
T KOG3087|consen   11 SLELIKQGAEARVPRGSFSGEAAIIKERFSKRYRHPAL---D------QKLTRKRTKQEARLLAKCRALGIPAPRLI---   78 (229)
T ss_pred             cceeeeccceeeEeeeccCCceeEEeecccccccchHH---H------HHHHHHHHHHHHHHHHHHHHhCCCCceEE---
Confidence            56778899999999999999999999743322222110   0      1123445567999999885553 233332   


Q ss_pred             eeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCC--cHHHHHHHhcCCCCHHH-HHHHHHHHHHHHHH
Q psy4039         279 FAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNT--DLRNYLRERCAQLSMHE-RVLLFTQLLEGVTH  355 (588)
Q Consensus       279 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~g--sL~~~L~~~~~~l~~~~-~~~i~~ql~~gL~y  355 (588)
                        +.|..                            .-.++|||.+|  ++.+++......-++.. ...+++.+-+.+.-
T Consensus        79 --~~D~~----------------------------~~~i~ME~~~g~~~vk~~i~~~~~~~~~d~~~~~~~~~iG~~igk  128 (229)
T KOG3087|consen   79 --FIDTY----------------------------GGQIYMEFIDGASTVKDFILSTMEDESEDEGLAELARRIGELIGK  128 (229)
T ss_pred             --EEecC----------------------------CCeEEEEeccchhHHHHHHHHHccCcccchhHHHHHHHHHHHHHH
Confidence              22210                            24689999987  89999987633333333 37899999999999


Q ss_pred             HHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccc
Q psy4039         356 LNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYT  394 (588)
Q Consensus       356 LH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~  394 (588)
                      ||.++|||+||-.+||++.++...  ..+.++|||++..
T Consensus       129 lH~ndiiHGDLTTSNill~~~~~~--~~~~lIdfgls~~  165 (229)
T KOG3087|consen  129 LHDNDIIHGDLTTSNILLRSDGNQ--ITPILIDFGLSSV  165 (229)
T ss_pred             hhhCCeecccccccceEEecCCCc--CceEEEeecchhc
Confidence            999999999999999999877432  4568999999744

>KOG1243|consensus

Probab=98.98  E-value=8.9e-09  Score=112.59  Aligned_cols=179  Identities=17%  Similarity=0.181  Sum_probs=119.6

Q ss_pred             HHHHHhhhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCC
Q psy4039         258 EDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQL  337 (588)
Q Consensus       258 Ei~il~~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l  337 (588)
                      -++-|+.+    +||||+++++.++..                            +.+|+|+|.+. -|..+++..    
T Consensus        59 A~k~lKtl----RHP~Il~yL~t~e~~----------------------------~~~ylvTErV~-Pl~~~lk~l----  101 (690)
T KOG1243|consen   59 AVKRLKTL----RHPNILSYLDTTEEE----------------------------GTLYLVTERVR-PLETVLKEL----  101 (690)
T ss_pred             HHHHhhhc----cCchhhhhhhhhccc----------------------------CceEEEeeccc-cHHHHHHHh----
Confidence            34445554    999999999887653                            14999999883 266666643    


Q ss_pred             CHHHHHHHHHHHHHHHHHHH-hCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccc
Q psy4039         338 SMHERVLLFTQLLEGVTHLN-MHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVAL  416 (588)
Q Consensus       338 ~~~~~~~i~~ql~~gL~yLH-~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y  416 (588)
                      +.......+.||+.||.||| ..+++|++|.-+.|+++..     +..||++|-++.....-....   .  ...--..|
T Consensus       102 ~~~~v~~Gl~qIl~AL~FL~~d~~lvHgNv~~~SVfVn~~-----GeWkLggle~v~~~~~~~~~~---~--~~~~~~s~  171 (690)
T KOG1243|consen  102 GKEEVCLGLFQILAALSFLNDDCNLVHGNVCKDSVFVNES-----GEWKLGGLELVSKASGFNAPA---K--SLYLIESF  171 (690)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCeeeccEeeeeEEEcCC-----CcEEEeeeEEEeccccCCccc---c--cchhhhcc
Confidence            36777788999999999998 5799999999999999998     899999999886543311100   0  11112256


Q ss_pred             cchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccccccccCCCCCCccHHHHHHHHHhhhhCCCCC
Q psy4039         417 MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDR  496 (588)
Q Consensus       417 ~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~R  496 (588)
                      ..|+.+....        -..|.|-|||++||++.|..+-..+.           .....+|.....+-.+-+--.+.+|
T Consensus       172 ~~P~~~~~s~--------~s~D~~~Lg~li~el~ng~~~~~~~~-----------~~~~~ipk~~~~~~~k~~~~~~~~r  232 (690)
T KOG1243|consen  172 DDPEEIDPSE--------WSIDSWGLGCLIEELFNGSLLTKTDL-----------SNTGKIPKALIELYCKKLGATELKR  232 (690)
T ss_pred             cChhhcCccc--------cchhhhhHHHHHHHHhCcccCcchhh-----------hccCccchhHHHHHHHHhccccccc
Confidence            7777653221        12699999999999999833211111           1223444444455545555567778


Q ss_pred             CCHHHH
Q psy4039         497 PSAELA  502 (588)
Q Consensus       497 ps~~e~  502 (588)
                      |.....
T Consensus       233 ~n~~~~  238 (690)
T KOG1243|consen  233 PNKLRF  238 (690)
T ss_pred             cchhhH
Confidence            774433

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.92  E-value=1.5e-08  Score=95.27  Aligned_cols=138  Identities=22%  Similarity=0.257  Sum_probs=94.5

Q ss_pred             eeecccCceeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEEeeee
Q psy4039         202 KFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAF  281 (588)
Q Consensus       202 ~~IG~G~fG~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l~~~~  281 (588)
                      ..|++|+=+.||.+.+.|.++.+|.=-+...-....  -.       ......-.+|..++..+....  =+...++++.
T Consensus         2 ~~i~~GAEa~i~~~~~~g~~av~K~Ri~K~YR~p~L--D~-------klrr~Rt~~Earil~~a~~~G--V~~P~v~dvD   70 (204)
T COG3642           2 DLIKQGAEAIIYLTDFLGLPAVVKERIPKRYRHPEL--DE-------KLRRERTRREARILAKAREAG--VPVPIVYDVD   70 (204)
T ss_pred             chhhCCcceeEEeeeccCcceEEEeecCcccCChHH--HH-------HHHHHHHHHHHHHHHHHHHcC--CCCCeEEEEc
Confidence            458899999999999888887777532211111110  01       113344567999998875442  1222334332


Q ss_pred             eccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCC-cHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC
Q psy4039         282 TDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNT-DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHR  360 (588)
Q Consensus       282 ~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~g-sL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yLH~~~  360 (588)
                      .+                              ...|+|||.+| .|.+++...        ...++..+-.-+.-||..|
T Consensus        71 ~~------------------------------~~~I~me~I~G~~lkd~l~~~--------~~~~~r~vG~~vg~lH~~g  112 (204)
T COG3642          71 PD------------------------------NGLIVMEYIEGELLKDALEEA--------RPDLLREVGRLVGKLHKAG  112 (204)
T ss_pred             CC------------------------------CCEEEEEEeCChhHHHHHHhc--------chHHHHHHHHHHHHHHhcC
Confidence            21                              26799999976 566677654        2567777777888899999


Q ss_pred             ceeccCCCCcEEEcCCCCCCCCceeeeccccccc
Q psy4039         361 TAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYT  394 (588)
Q Consensus       361 IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~  394 (588)
                      |+|+||.++||++..+      .+.++|||++..
T Consensus       113 ivHGDLTtsNiIl~~~------~i~~IDfGLg~~  140 (204)
T COG3642         113 IVHGDLTTSNIILSGG------RIYFIDFGLGEF  140 (204)
T ss_pred             eecCCCccceEEEeCC------cEEEEECCcccc
Confidence            9999999999999865      588999999864

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=98.84  E-value=4.5e-08  Score=99.43  Aligned_cols=153  Identities=14%  Similarity=0.075  Sum_probs=98.8

Q ss_pred             eeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCC-CCCceEEEeeeeeccCCCC
Q psy4039         210 AVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLP-PHPNVVVMHFAFTDFVPSI  288 (588)
Q Consensus       210 G~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~-~HpNIV~l~~~~~~~~~~~  288 (588)
                      ..|++..+.|+.|.||.....    ....+.+.+..-  ......+.+|...+..+.... .-|.+|-+   .+...   
T Consensus        36 rrvvr~~~~g~~~~vKr~~~~----~~~~~~k~l~~~--~~p~~~a~rE~~~l~~L~~~GIptP~pVa~---~e~~~---  103 (268)
T PRK15123         36 RRTLRFELAGKSYFLKWHRGT----GWGEIFKNLLSL--RMPVLGADREWRAIHRLHEVGVDTMTGVAF---GERGS---  103 (268)
T ss_pred             ceEEEEEECCEEEEEEEecCC----cHHHHhhhhccc--ccccHHHHHHHHHHHHHHHcCCCCCCeeEE---EEecC---
Confidence            346678888999999986321    111222322210  011223667888887774332 34444433   32210   


Q ss_pred             CCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCC--cHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHhCCceecc
Q psy4039         289 PDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNT--DLRNYLRER-CAQLSMHERVLLFTQLLEGVTHLNMHRTAHRD  365 (588)
Q Consensus       289 ~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~g--sL~~~L~~~-~~~l~~~~~~~i~~ql~~gL~yLH~~~IvHrD  365 (588)
                                          .+....-++|||++++  +|.+++... ....+......++.+++..+.-||..||+|+|
T Consensus       104 --------------------~~~~~~s~LVte~l~~~~sL~~~~~~~~~~~~~~~~~~~ll~~la~~i~~LH~~Gi~HgD  163 (268)
T PRK15123        104 --------------------NPATRTSFIITEDLAPTISLEDYCADWATNPPDPRLKRMLIKRVATMVRDMHAAGINHRD  163 (268)
T ss_pred             --------------------CCccceeEEEEeeCCCCccHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHHCcCccCC
Confidence                                0112247899999965  799998642 22566778889999999999999999999999


Q ss_pred             CCCCcEEEcCCC--CCCCCceeeeccccccc
Q psy4039         366 LKSDNILLDCSE--DNTCPQLVITDFGSSYT  394 (588)
Q Consensus       366 LKp~NILld~~~--~~~~~~vkL~DFGla~~  394 (588)
                      ++++|||++.+.  .+....+.|+||+.++.
T Consensus       164 L~~~NiLl~~~~~~~~~~~~~~LIDl~r~~~  194 (268)
T PRK15123        164 CYICHFLLHLPFPGREEDLKLSVIDLHRAQI  194 (268)
T ss_pred             CChhhEEEeccccCCCCCceEEEEECCcccc
Confidence            999999998520  01116789999998753

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.84  E-value=8.3e-09  Score=99.10  Aligned_cols=144  Identities=22%  Similarity=0.154  Sum_probs=81.7

Q ss_pred             eEEEEEEC-CeeEEEEEEecCCCCcchHHHHHHHhhh---------hcccccchhhhHHHHHhhhcCCCCCCceEEEeee
Q psy4039         211 VVYEATFR-GVEYALKMMFNYSAASNSHAILKAMSKE---------LLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFA  280 (588)
Q Consensus       211 ~Vy~a~~~-g~~vAVK~i~~~~~~~~~~~~~k~~~~e---------~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l~~~  280 (588)
                      -||.|... |..+|||+.+..............-...         .....+....+|...|..+....  -++.+.+++
T Consensus         1 ~Vy~~~~~~~~~~a~K~~r~~~~~Fk~~~~y~~~~~r~~~~~~~~~~~~~~~~~~~~E~~~L~~l~~~G--v~vP~p~~~   78 (188)
T PF01163_consen    1 DVYHAIDPDGEEVAVKIYRTGRTSFKRRKKYRDYDYRFKKYRHKSSWRYLIREWAKKEFRNLKRLYEAG--VPVPKPYDY   78 (188)
T ss_dssp             EEEEEEECTTEEEEEEEE-S---SS-HHHHHTTTSTTSTTC--G--CHHHHHHHHHHHHHHHHHCCCTT---SS--EEEE
T ss_pred             CEEEEECCCCCEEEEEEeccCceEEEEeeeeecccchhcccccccCHHHHHHHHHHHHHHHHHHHHHCC--ccCCcEEEE
Confidence            38999885 8899999987543222211100000000         01111223456889999884332  133344433


Q ss_pred             eeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCC--CcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH-HH
Q psy4039         281 FTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYN--TDLRNYLRERCAQLSMHERVLLFTQLLEGVTH-LN  357 (588)
Q Consensus       281 ~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~--gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~y-LH  357 (588)
                      ..                                -.+||||++  |.....|.+.  .++......++.+++..+.. +|
T Consensus        79 ~~--------------------------------~~ivME~I~~~G~~~~~l~~~--~~~~~~~~~~~~~il~~~~~~~~  124 (188)
T PF01163_consen   79 NR--------------------------------NVIVMEYIGEDGVPLPRLKDV--DLSPEEPKELLEEILEEIIKMLH  124 (188)
T ss_dssp             ET--------------------------------TEEEEE--EETTEEGGCHHHC--GGGGSTHHHHHHHHHHHHHHHHH
T ss_pred             eC--------------------------------CEEEEEecCCCccchhhHHhc--cccchhHHHHHHHHHHHHHHHHH
Confidence            11                                469999997  7433444433  33345667788888886666 57


Q ss_pred             hCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccC
Q psy4039         358 MHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNK  396 (588)
Q Consensus       358 ~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~  396 (588)
                      ..||+|+||.+.|||++++      .+.|+|||.|....
T Consensus       125 ~~givHGDLs~~NIlv~~~------~~~iIDf~qav~~~  157 (188)
T PF01163_consen  125 KAGIVHGDLSEYNILVDDG------KVYIIDFGQAVDSS  157 (188)
T ss_dssp             CTTEEESS-STTSEEEETT------CEEE--GTTEEETT
T ss_pred             hcCceecCCChhhEEeecc------eEEEEecCcceecC
Confidence            9999999999999999865      78999999886543

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=98.83  E-value=1.7e-07  Score=97.51  Aligned_cols=178  Identities=14%  Similarity=0.181  Sum_probs=119.8

Q ss_pred             EEEEEecCCC--cHHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeee
Q psy4039         315 LFILMKKYNT--DLRNYLRER-----CAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVIT  387 (588)
Q Consensus       315 l~lvme~~~g--sL~~~L~~~-----~~~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~  387 (588)
                      .-++|....|  -...+++-.     -...+|.....+++.++.+.+-||+.|.+-+|+.++|+|+.++     ..++|.
T Consensus        85 iGflmP~v~g~~pI~~~y~p~tRRqs~P~~~w~fllrvaRnlA~aFA~lH~~Gh~vGDVn~~~~lVsd~-----~~V~LV  159 (637)
T COG4248          85 IGFLMPKVSGKEPIHMIYSPATRRQSYPHCAWDFLLRVARNLASAFATLHEHGHVVGDVNQNSFLVSDD-----SKVVLV  159 (637)
T ss_pred             eEEecccCCCccchhhhcCchhhcccCCccccHHHHHHHHHHHHHHHHHHhcCCcccccCccceeeecC-----ceEEEE
Confidence            6677888743  344444311     1247899999999999999999999999999999999999988     678887


Q ss_pred             ccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC-CCCcCchhhHHHHHHHHhcC-CCCCcccc-----
Q psy4039         388 DFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV-NYSKSDAWTAGTVAYEIFGH-DNPFYQSA-----  460 (588)
Q Consensus       388 DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~-~~~ksDVwS~Gvil~ElltG-~~Pf~~~~-----  460 (588)
                      |=..-....++...      ...+|...|.+||.-.-.  ++... -+...|.|.+||++++++.| +.||.+-.     
T Consensus       160 dsDsfqi~~ng~~~------~cpVg~~eftPPElQ~~~--sf~g~~r~~~hD~FGLavLiF~lL~ggrHPysGI~~~~~a  231 (637)
T COG4248         160 DSDSFQINANGTLH------LCPVGVSEFTPPELQTLP--SFVGFERTANHDNFGLAVLIFHLLFGGRHPYSGIPLISDA  231 (637)
T ss_pred             cccceeeccCCceE------ecccCccccCCHHHhccc--cccccCCCccccchhHHHHHHHHHhcCCCCCCcccccCCC
Confidence            75433222222211      145789999999986511  12211 22458999999999999876 99997721     


Q ss_pred             --------ccccc--cc----cccC----CCCCCccHHHHHHHHHhhhh--CCCCCCCHHHHHHH
Q psy4039         461 --------RNTDY--EV----NALP----QLNTNVPEVMRRLVAKLLEN--DPSDRPSAELAATV  505 (588)
Q Consensus       461 --------~~~~~--~~----~~~~----~~~~~~~~~l~~Li~~~L~~--dP~~Rps~~e~l~~  505 (588)
                              ....+  ..    ...+    .-+.-+|++++.|..+|+..  ++.-|||++.-+..
T Consensus       232 p~p~E~~Ia~g~f~ya~~~~~g~~p~P~~~P~~~Lpp~vqAlF~qaF~~~~~~~~RP~a~aW~aA  296 (637)
T COG4248         232 PNPLETDIAHGRFAYASDQRRGLKPPPRSIPLSMLPPDVQALFQQAFTESGVATPRPTAKAWVAA  296 (637)
T ss_pred             CCcchhhhhcceeeechhccCCCCCCCCCCChhhcCHHHHHHHHHHhcccCCCCCCCCHHHHHHH
Confidence                    01111  00    0010    11234678999999999964  36789998754443

>KOG2137|consensus

Probab=98.82  E-value=3.1e-09  Score=116.52  Aligned_cols=156  Identities=19%  Similarity=0.348  Sum_probs=110.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHh-CCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccc----cccC
Q psy4039         338 SMHERVLLFTQLLEGVTHLNM-HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADI----ELGG  412 (588)
Q Consensus       338 ~~~~~~~i~~ql~~gL~yLH~-~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~----~~~G  412 (588)
                      ..+....=+.+++.|+.|+|. .++||+.|.|++|.++..     +..||+.|+++.....+...++...+.    -..-
T Consensus        97 aTe~~f~nl~~v~dgl~flh~sAk~VH~ni~p~~i~~na~-----~~wkl~Gf~f~v~~~~~~~~p~~~yd~~lp~~~~~  171 (700)
T KOG2137|consen   97 ATEDGFANLGNVADGLAFLHRSAKVVHGNIQPEAIVVNAN-----GDWKLAGFSFCVNANGPTEYPFSEYDPPLPLLLQP  171 (700)
T ss_pred             cccHhhhhhhcccchhhhhccCcceeecccchhheeeccC-----cceeeccchhhhccCCCCccccccCCCCCChhhcc
Confidence            334455556677799999997 599999999999999988     889999999987655533322211110    1123


Q ss_pred             CccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccccc------ccccCCCCCCccHHHHHHH
Q psy4039         413 NVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTDYE------VNALPQLNTNVPEVMRRLV  485 (588)
Q Consensus       413 T~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~~~------~~~~~~~~~~~~~~l~~Li  485 (588)
                      ...|.|||++....      .+.++|+||+||++|.+.. |+.-+........+.      ....-.....+|+++++-+
T Consensus       172 ~~~f~apE~~~~~~------~~~~sd~fSlG~li~~i~~~gk~i~~a~~~~~~~~~~~~~~~~~~~~~s~~~p~el~~~l  245 (700)
T KOG2137|consen  172 HLNFLAPEYLLGTT------NTPASDVFSLGVLIYTIYNGGKSIIAANGGLLSYSFSRNLLNAGAFGYSNNLPSELRESL  245 (700)
T ss_pred             Ccccccchhhcccc------ccccccceeeeeEEEEEecCCcchhhccCCcchhhhhhcccccccccccccCcHHHHHHH
Confidence            45799999997754      4578999999999999994 444443321111110      1111123468999999999


Q ss_pred             HHhhhhCCCCCCCHHHHHH
Q psy4039         486 AKLLENDPSDRPSAELAAT  504 (588)
Q Consensus       486 ~~~L~~dP~~Rps~~e~l~  504 (588)
                      .+++..++..||++.++..
T Consensus       246 ~k~l~~~~~~rp~~~~l~~  264 (700)
T KOG2137|consen  246 KKLLNGDSAVRPTLDLLLS  264 (700)
T ss_pred             HHHhcCCcccCcchhhhhc
Confidence            9999999999998888766

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=98.77  E-value=3.2e-08  Score=96.76  Aligned_cols=145  Identities=18%  Similarity=0.147  Sum_probs=97.0

Q ss_pred             eeecccCceeEEEEEECC-eeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEEeee
Q psy4039         202 KFIAKGTNAVVYEATFRG-VEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFA  280 (588)
Q Consensus       202 ~~IG~G~fG~Vy~a~~~g-~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l~~~  280 (588)
                      +.|+.|.++.||++...+ ..++||+.......                .....+..|..+++.+...  +.++.+++.+
T Consensus         4 ~~l~~G~~n~~~~v~~~~g~~~ilK~~~~~~~~----------------~~~~~~~~E~~~~~~l~~~--~~~vp~~~~~   65 (223)
T cd05154           4 RQLSGGQSNLTYLLTAGGGRRLVLRRPPPGALL----------------PSAHDVAREYRVLRALAGT--GVPVPKVLAL   65 (223)
T ss_pred             eecCCCccceEEEEEecCCcceEEEeCCCcccC----------------cccccHHHHHHHHHHhhCC--CCCCCCEEEE
Confidence            568999999999998875 89999997432110                0233466788999887321  2334455544


Q ss_pred             eeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCC-cHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh-
Q psy4039         281 FTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNT-DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNM-  358 (588)
Q Consensus       281 ~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~g-sL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yLH~-  358 (588)
                      ....                       +  ..+..++|||+++| ++.+.+..  ..+++.+...++.+++++|.+||+ 
T Consensus        66 ~~~~-----------------------~--~~~~~~~v~e~i~G~~l~~~~~~--~~~~~~~~~~i~~~i~~~l~~lH~~  118 (223)
T cd05154          66 CEDP-----------------------S--VLGTPFYVMERVDGRVLRDRLLR--PELSPEERRALARALADTLAALHSV  118 (223)
T ss_pred             CCCC-----------------------C--ccCCceEEEEEeCCEecCCCCCC--CCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            3321                       0  01136899999954 55543321  156777777778888888888773 


Q ss_pred             -------------------------------------------------------CCceeccCCCCcEEEcCCCCCCCCc
Q psy4039         359 -------------------------------------------------------HRTAHRDLKSDNILLDCSEDNTCPQ  383 (588)
Q Consensus       359 -------------------------------------------------------~~IvHrDLKp~NILld~~~~~~~~~  383 (588)
                                                                             ..++|+|+.|.||+++.+..   ..
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~---~~  195 (223)
T cd05154         119 DPAAVGLGDLGRPGGYLERQVARWRRQYDASRTDEPPAMERLLRWLEAHLPADSRPGLVHGDYRLGNVLFHPDEP---RV  195 (223)
T ss_pred             ChhhcCCcccCCCCchHHHHHHHHHHHHHhhcccccHHHHHHHHHHHhhCCCCCCcEEEECCCCcccEEEcCCCC---cE
Confidence                                                                   24699999999999987311   56


Q ss_pred             eeeeccccccc
Q psy4039         384 LVITDFGSSYT  394 (588)
Q Consensus       384 vkL~DFGla~~  394 (588)
                      +.|+||+.+..
T Consensus       196 ~~iID~e~~~~  206 (223)
T cd05154         196 VAVLDWELATL  206 (223)
T ss_pred             EEEEecccccc
Confidence            78999998754

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>KOG0690|consensus

Probab=98.63  E-value=1.9e-08  Score=100.88  Aligned_cols=60  Identities=17%  Similarity=0.174  Sum_probs=54.8

Q ss_pred             HHHHHHHHhhhhhhcCC--chhHHHhHHH------HHHhhhcCCCCcccccccccccCcccccccccccc
Q psy4039          60 NARKLFVNSLLNRVTNS--MASDLRRKTI------QQLLYKDNSKPFLAFVGVSLASGTGILTNRVTNSM  121 (588)
Q Consensus        60 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~------~~l~~~~~~~pf~~~~~~~~~~~~~~~~~~~~~~~  121 (588)
                      -|..||+++|.+|||+|  +|.||.+|.|      ++++.|+|.|||||-|  .+.|||.+||.+||...
T Consensus       398 LLsGLL~kdP~kRLGgGpdDakEi~~h~FF~~v~W~~~~~Kki~PPfKPqV--tSetDTryFD~EFT~q~  465 (516)
T KOG0690|consen  398 LLSGLLKKDPKKRLGGGPDDAKEIMRHRFFASVDWEATYRKKIEPPFKPQV--TSETDTRYFDEEFTSQP  465 (516)
T ss_pred             HHHHHhhcChHhhcCCCchhHHHHHhhhhhccCCHHHHHHhccCCCCCCCc--ccccchhhhhhhhhcce
Confidence            47889999999999999  9999999999      8999999999999988  67789999999997543

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.63  E-value=2.3e-07  Score=90.82  Aligned_cols=80  Identities=23%  Similarity=0.295  Sum_probs=67.3

Q ss_pred             ceEEEEEecCCC--cHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccc
Q psy4039         313 MSLFILMKKYNT--DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG  390 (588)
Q Consensus       313 ~~l~lvme~~~g--sL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFG  390 (588)
                      ..-++|+|++.+  +|.+++.... .++......++.+++..+.-||+.||+|+|+++.|||++.+.  ....+.++||+
T Consensus        90 ~~s~lite~l~~~~~L~~~~~~~~-~~~~~~~~~ll~~l~~~i~~lH~~gi~H~Dl~~~NILv~~~~--~~~~~~lIDld  166 (206)
T PF06293_consen   90 YRSYLITEALPGAQDLRDLLQQWE-QLDPSQRRELLRALARLIAKLHDAGIYHGDLNPSNILVDPDD--GQYRFYLIDLD  166 (206)
T ss_pred             eeEEEEEEeCCCcccHHHHHHhhc-ccchhhHHHHHHHHHHHHHHHHHCcCCCCCCCcccEEEeCCC--CceeEEEEcch
Confidence            357899999954  7999998743 377788899999999999999999999999999999999873  11479999999


Q ss_pred             ccccc
Q psy4039         391 SSYTN  395 (588)
Q Consensus       391 la~~~  395 (588)
                      -++..
T Consensus       167 ~~~~~  171 (206)
T PF06293_consen  167 RMRFR  171 (206)
T ss_pred             hceeC
Confidence            87653

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>KOG3741|consensus

Probab=98.61  E-value=1e-06  Score=94.01  Aligned_cols=218  Identities=16%  Similarity=0.140  Sum_probs=146.5

Q ss_pred             CceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEEeeeeeccC
Q psy4039         208 TNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFV  285 (588)
Q Consensus       208 ~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l~~~~~~~~  285 (588)
                      -..+.|++...  |..|++|++......+-.                 ....-++.++++    .|+|||++.++|....
T Consensus       288 ~~~Ttyk~~s~~DG~~YvLkRlhg~r~~~~n-----------------k~t~lve~wkkl----~h~NvV~frevf~t~t  346 (655)
T KOG3741|consen  288 FSITTYKATSNVDGNAYVLKRLHGDRDQSTN-----------------KDTSLVEAWKKL----CHTNVVPFREVFLTYT  346 (655)
T ss_pred             ccceeEeeeeccCCceeeeeeeccccccCcc-----------------cchHHHHHHHHh----ccCceeehhhhhhhhc
Confidence            34678999886  899999998321111100                 001124456665    8999999999998532


Q ss_pred             CCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCC--CcHHHHHHHh--------------cCCCCHHHHHHHHHHH
Q psy4039         286 PSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYN--TDLRNYLRER--------------CAQLSMHERVLLFTQL  349 (588)
Q Consensus       286 ~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~--gsL~~~L~~~--------------~~~l~~~~~~~i~~ql  349 (588)
                                              -...++++|++|+.  ++|.++-...              +...+++..|.++.|+
T Consensus       347 ------------------------F~D~SlvlvYDYyP~s~TL~d~~F~~~~~t~~~n~~~~~~~~~~~e~~lW~y~~QL  402 (655)
T KOG3741|consen  347 ------------------------FGDLSLVLVYDYYPSSPTLYDLYFANPPFTKRTNSFYPSQNLKAPEEVLWSYISQL  402 (655)
T ss_pred             ------------------------cCcceEEEEEecCCCCchHHHHHccCCccccccccccccCCCCchHHHHHHHHHHH
Confidence                                    11225999999994  5777765321              2357889999999999


Q ss_pred             HHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCc
Q psy4039         350 LEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF  429 (588)
Q Consensus       350 ~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~  429 (588)
                      ..||.++|+.|..-+-|.|.+||++.+     .+++|+--|..-....+.            +       |-+.+.    
T Consensus       403 taaL~sIHssGLAck~L~~~kIlv~G~-----~RIriS~C~i~Dvl~~d~------------~-------~~le~~----  454 (655)
T KOG3741|consen  403 TAALYSIHSSGLACKTLDLKKILVTGK-----MRIRISGCGIMDVLQEDP------------T-------EPLESQ----  454 (655)
T ss_pred             HHHHHHHHhcCceeecccHhHeEeeCc-----ceEEEecccceeeecCCC------------C-------cchhHH----
Confidence            999999999999999999999999977     677776555443322211            0       112211    


Q ss_pred             cCCCCCcCchhhHHHHHHHHhcCCCCCccccccccccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHh
Q psy4039         430 SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       430 ~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~  507 (588)
                           .+-|.=.||.+++-|.||..--.   ............+-..++.+++++|.-+...++++ -+..+++...-
T Consensus       455 -----Qq~D~~~lG~ll~aLAt~~~ns~---~~d~~~~s~~~~I~~~yS~D~rn~v~yl~s~~~~~-ksI~~llp~~~  523 (655)
T KOG3741|consen  455 -----QQNDLRDLGLLLLALATGTENSN---RTDSTQSSHLTRITTTYSTDLRNVVEYLESLNFRE-KSIQDLLPMIG  523 (655)
T ss_pred             -----hhhhHHHHHHHHHHHhhcccccc---cccchHHHHHHHhhhhhhHHHHHHHHHHHhcCccc-ccHHHHHHHHH
Confidence                 23688899999999999854311   11111111122344578899999999998888886 67777766443

>PRK09902 hypothetical protein; Provisional

Probab=98.59  E-value=6.6e-07  Score=86.87  Aligned_cols=150  Identities=10%  Similarity=0.078  Sum_probs=108.6

Q ss_pred             ecccCceeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhc-ccccchhhhHHHHHhhhcCCCCCCceEEEeeeee
Q psy4039         204 IAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELL-PLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFT  282 (588)
Q Consensus       204 IG~G~fG~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~-~~~~~~~~~Ei~il~~l~~l~~HpNIV~l~~~~~  282 (588)
                      -|+||-+-|++-.+.|..+=||.-.++-            .+... +.....+.+|+..++.+..+. =| +.+.. ++.
T Consensus        26 ~~rgG~SgV~r~~~~g~~~ylKrq~nhl------------~~s~r~P~g~ptf~rE~~~L~~L~~~G-vP-VP~pv-f~~   90 (216)
T PRK09902         26 YRRNGMSGVQCVERNGKKLYVKRMTHHL------------FHSVRYPFGRPTIVREVAVIKELERAG-VI-VPKIV-FGE   90 (216)
T ss_pred             cCCCCcceEEEEEeCCcEEEEEeccCcc------------cccccCCCCchHHHHHHHHHHHHHHcC-CC-CCccc-eee
Confidence            4778999999998888888899863221            11111 557778889999998885432 12 33333 222


Q ss_pred             ccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCC--CcHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhC
Q psy4039         283 DFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYN--TDLRNYLRERC-AQLSMHERVLLFTQLLEGVTHLNMH  359 (588)
Q Consensus       283 ~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~--gsL~~~L~~~~-~~l~~~~~~~i~~ql~~gL~yLH~~  359 (588)
                      ..                       ..+....-+||+|.++  -+|.+++.+.. .+.+..+...++.++++.+.-||..
T Consensus        91 ~~-----------------------k~~~~~rA~LVTe~L~g~~~L~~~l~~~~~~~~~~~~k~~il~~va~~ia~LH~~  147 (216)
T PRK09902         91 AV-----------------------KIEGEWRALLVTEDMAGFISIADWYAQHAVSPYSDEVRQAMLKAVALAFKKMHSV  147 (216)
T ss_pred             ee-----------------------ccCCceEEEEEEEeCCCCccHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHC
Confidence            11                       1111335889999886  59999987642 3568888899999999999999999


Q ss_pred             CceeccCCCCcEEEcCCCCCCCCceeeeccccccc
Q psy4039         360 RTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYT  394 (588)
Q Consensus       360 ~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~  394 (588)
                      |+.|+|+-+.|||++.++.   ..++++||.-++.
T Consensus       148 Gv~Hgdly~khIll~~~g~---~~v~lIDlEk~r~  179 (216)
T PRK09902        148 NRQHGCCYVRHIYVKTEGK---AEAGFLDLEKSRR  179 (216)
T ss_pred             CCcCCCCCHhheeecCCCC---eeEEEEEhhccch
Confidence            9999999999999986521   4599999997765

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=98.39  E-value=1.2e-06  Score=87.15  Aligned_cols=148  Identities=19%  Similarity=0.145  Sum_probs=97.6

Q ss_pred             EEeeeecccCceeEEEEEEC-CeeEEEEEEecCCCCcchHHHHHHH-----hhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         199 QIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAILKAM-----SKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       199 ~~~~~IG~G~fG~Vy~a~~~-g~~vAVK~i~~~~~~~~~~~~~k~~-----~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      .++.+||.|-=|.||.|... |.++|||.=+.+..+......-+..     ...+.-..+....+|.++|+.|     ||
T Consensus        94 ~iG~~IGvGKEsdVY~~~~~~g~~~~vKfHR~GrtsFrkvk~~R~y~~~~~h~sWl~~sRl~A~rEf~~L~~L-----~~  168 (304)
T COG0478          94 AIGTKIGVGKESDVYVAIDPKGRKVAVKFHRLGRTSFRKVKRNRDYLADKEHGSWLYVSRLAAEREFEALQRL-----YP  168 (304)
T ss_pred             hhccccccCccceEEEEECCCCCEEEEEEeecCchhhhhhcchhhhhccccCcchhhhHHHHHHHHHHHHHHh-----hh
Confidence            45788999999999999997 9999999865432221111001111     1112223344456789999887     33


Q ss_pred             c---eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCc-HHHHHHHhcCCCCHHHHHHHHHH
Q psy4039         273 N---VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTD-LRNYLRERCAQLSMHERVLLFTQ  348 (588)
Q Consensus       273 N---IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gs-L~~~L~~~~~~l~~~~~~~i~~q  348 (588)
                      -   +.+-+++                                ..-.+|||+.+|- |...      +++.+..-.++..
T Consensus       169 ~G~~VP~P~~~--------------------------------nRHaVvMe~ieG~eL~~~------r~~~en~~~il~~  210 (304)
T COG0478         169 EGVKVPKPIAW--------------------------------NRHAVVMEYIEGVELYRL------RLDVENPDEILDK  210 (304)
T ss_pred             cCCCCCCcccc--------------------------------ccceeeeehcccceeecc------cCcccCHHHHHHH
Confidence            2   2121111                                1257899999763 2211      3345556667777


Q ss_pred             HHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccc
Q psy4039         349 LLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYT  394 (588)
Q Consensus       349 l~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~  394 (588)
                      |++-+.-+-+.||||+|+.+=||+++++     +.+.++||-.+..
T Consensus       211 il~~~~~~~~~GiVHGDlSefNIlV~~d-----g~~~vIDwPQ~v~  251 (304)
T COG0478         211 ILEEVRKAYRRGIVHGDLSEFNILVTED-----GDIVVIDWPQAVP  251 (304)
T ss_pred             HHHHHHHHHHcCccccCCchheEEEecC-----CCEEEEeCccccc
Confidence            7777777779999999999999999998     8899999987643

>KOG0694|consensus

Probab=98.36  E-value=1.6e-07  Score=102.81  Aligned_cols=63  Identities=16%  Similarity=0.247  Sum_probs=56.7

Q ss_pred             HHhHHHHHHHHhhhhhhcCC--chhHHHhHHH------HHHhhhcCCCCcccccccccccCcccccccccccc
Q psy4039          57 YFQNARKLFVNSLLNRVTNS--MASDLRRKTI------QQLLYKDNSKPFLAFVGVSLASGTGILTNRVTNSM  121 (588)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~------~~l~~~~~~~pf~~~~~~~~~~~~~~~~~~~~~~~  121 (588)
                      .-.-+|+||.|||..|||+|  +++|||.|+|      ++|++|+|+|||+|-+--..  |+++||.+||..-
T Consensus       595 a~~il~~ll~k~p~kRLG~~e~d~~~i~~hpFFr~i~w~~L~~r~i~PPf~P~i~~~~--D~snFd~eFt~e~  665 (694)
T KOG0694|consen  595 AIAIMRRLLRKNPEKRLGSGERDAEDIKKHPFFRSIDWDDLLNRRIKPPFVPTIKGPE--DVSNFDEEFTSEK  665 (694)
T ss_pred             HHHHHHHHhccCcccccCCCCCCchhhhhCCccccCCHHHHhhccCCCCCCcccCChh--hhcccchhhhcCC
Confidence            45669999999999999997  9999999999      99999999999999997666  8889999998654

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=98.36  E-value=2.4e-06  Score=93.96  Aligned_cols=161  Identities=17%  Similarity=0.182  Sum_probs=98.0

Q ss_pred             eeecccCceeEEEEEEC-CeeEEEEEEecCCCCc--chHHHHHHHhhhh---ccc------------------ccchhhh
Q psy4039         202 KFIAKGTNAVVYEATFR-GVEYALKMMFNYSAAS--NSHAILKAMSKEL---LPL------------------RKPLRLN  257 (588)
Q Consensus       202 ~~IG~G~fG~Vy~a~~~-g~~vAVK~i~~~~~~~--~~~~~~k~~~~e~---~~~------------------~~~~~~~  257 (588)
                      +.|+.++-|.||+|+++ |+.||||+.+++-...  .+...++.+.+-.   .+.                  .+-++.+
T Consensus       131 ~PiAsASIaQVH~A~L~sG~~VAVKVqrPgi~~~i~~DL~il~~~a~~~~~~~~~~~~l~~~~vv~e~~~~l~~ElDy~~  210 (517)
T COG0661         131 EPIASASIAQVHRAVLKSGEEVAVKVQRPGIRERIEADLKLLRRLARLIKRLPPGGRRLDLVEVVDEFEKRLREELDYRR  210 (517)
T ss_pred             CchhhhhHhhheeEEecCCCEEEEEecCCChHHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHHHHHhCHHH
Confidence            67999999999999998 9999999987643221  1222222222111   111                  1223455


Q ss_pred             HHHHHhhhcCCCC-CCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCC-cHHHHHHHhcC
Q psy4039         258 EDMLMNSVENLPP-HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNT-DLRNYLRERCA  335 (588)
Q Consensus       258 Ei~il~~l~~l~~-HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~g-sL~~~L~~~~~  335 (588)
                      |...+.++.+... .|+| ++-.+|.+.+                           ..-.++|||++| .+.+...-...
T Consensus       211 EA~n~~~~~~nf~~~~~v-~VP~V~we~t---------------------------~~~VLtmE~i~Gi~i~d~~~l~~~  262 (517)
T COG0661         211 EAANAERFRENFKDDPDV-YVPKVYWEYT---------------------------TRRVLTMEWIDGIKISDIAALKSA  262 (517)
T ss_pred             HHHHHHHHHHHcCCCCCe-Eeceeehhcc---------------------------CCcEEEEEeeCCEecccHHHHHhc
Confidence            6666666654433 3443 3433333211                           126899999976 56666332222


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCC
Q psy4039         336 QLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKS  397 (588)
Q Consensus       336 ~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~  397 (588)
                      .++.........++.  +..+-..|++|.|..|.||+++.+     +.+.+.|||+....+.
T Consensus       263 g~d~k~ia~~~~~~f--~~q~~~dgffHaDpHpGNi~v~~~-----g~i~~lDfGi~g~l~~  317 (517)
T COG0661         263 GIDRKELAELLVRAF--LRQLLRDGFFHADPHPGNILVRSD-----GRIVLLDFGIVGRLDP  317 (517)
T ss_pred             CCCHHHHHHHHHHHH--HHHHHhcCccccCCCccceEEecC-----CcEEEEcCcceecCCH
Confidence            556333332222221  333445899999999999999988     8999999999876554

>KOG0598|consensus

Probab=98.30  E-value=3.2e-07  Score=94.01  Aligned_cols=67  Identities=22%  Similarity=0.199  Sum_probs=58.6

Q ss_pred             hHHHHHHHHhhhhhhcCC-chhHHHhHHH------HHHhhhcCCCCcccccccccccCcccccccccccccchhhH
Q psy4039          59 QNARKLFVNSLLNRVTNS-MASDLRRKTI------QQLLYKDNSKPFLAFVGVSLASGTGILTNRVTNSMASDLRR  127 (588)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------~~l~~~~~~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (588)
                      ..+++|+++||.+|||+. ++++||+|+|      ++|++|+++|||+|-++...  ++..||++||...+++++.
T Consensus       255 dll~~LL~rdp~~RLg~~~d~~~ik~HpfF~~inW~~l~~k~l~PpF~P~~~~~~--~~~~Fd~eft~~~~~~~~~  328 (357)
T KOG0598|consen  255 DLLKKLLKRDPRQRLGGPGDAEEIKRHPFFKGINWEKLLAKKLSPPFKPNVTGLE--DTSNFDNEFTSYTVDYSPV  328 (357)
T ss_pred             HHHHHHhccCHHHhcCCCCChHHhhcCcccccCCHHHHHhcCCCCCeecCCCCcc--ccccccHHHHhccccCCcc
Confidence            449999999999999843 9999999999      99999999999999998777  7888999998876665554

>KOG1235|consensus

Probab=98.06  E-value=2.6e-05  Score=85.77  Aligned_cols=162  Identities=18%  Similarity=0.155  Sum_probs=95.4

Q ss_pred             eeecccCceeEEEEEEC-CeeEEEEEEecCCCCc--chHHHHH----------------HHhhhhc--ccccchhhhHHH
Q psy4039         202 KFIAKGTNAVVYEATFR-GVEYALKMMFNYSAAS--NSHAILK----------------AMSKELL--PLRKPLRLNEDM  260 (588)
Q Consensus       202 ~~IG~G~fG~Vy~a~~~-g~~vAVK~i~~~~~~~--~~~~~~k----------------~~~~e~~--~~~~~~~~~Ei~  260 (588)
                      +.||.-+.|.||+|+.+ |+.||||+-++.-...  .+...++                .+..|..  -..+-+|.+|.+
T Consensus       167 ~piaaASlaQVhrA~L~~G~~VaVKVQ~P~l~~~~~~Dl~~~~~~~~~l~k~~p~~~~~~lvdE~~~~L~~ELDF~~EA~  246 (538)
T KOG1235|consen  167 EPIAAASLAQVHRARLKNGEDVAVKVQHPGLEKLIMLDLRNLRLLAKVLQKFFPDFDLVWLVDEIAKSLPQELDFTKEAK  246 (538)
T ss_pred             chhhhcchhheEEEEecCCCEEEEEecCcChHHHHHHHHHHHHHHHHHHHHhCcCCchhhHHHHHHhhhHhhcchHHHHH
Confidence            57999999999999998 7889999965422111  0001111                1111111  112334556666


Q ss_pred             HHhhhcCCCCCCc---eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCC----cHHHHHHHh
Q psy4039         261 LMNSVENLPPHPN---VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNT----DLRNYLRER  333 (588)
Q Consensus       261 il~~l~~l~~HpN---IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~g----sL~~~L~~~  333 (588)
                      -..++.+...|-+   =|.+-.+|.+.                           ...-.++|||++|    +| ++|.+.
T Consensus       247 Nae~~~~~f~~~~~~~~V~VP~Vy~~~---------------------------st~RVLtME~~~G~~i~Dl-~~i~~~  298 (538)
T KOG1235|consen  247 NAERFRENFKDFSLLTYVLVPKVYWDL---------------------------STKRVLTMEYVDGIKINDL-DAIDKR  298 (538)
T ss_pred             hHHHHHHHHHhcccccceeCCeehhhc---------------------------CcceEEEEEecCCccCCCH-HHHHHc
Confidence            5555544445666   12222232221                           1137899999965    44 455555


Q ss_pred             cCCCCHHHHHHHHHHHHHHHH-HHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCC
Q psy4039         334 CAQLSMHERVLLFTQLLEGVT-HLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKS  397 (588)
Q Consensus       334 ~~~l~~~~~~~i~~ql~~gL~-yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~  397 (588)
                        .++...+   +..+.++.. -+=..|++|.|=.|.||+++.+.+.. ..+.+-|||+......
T Consensus       299 --gi~~~~i---~~~l~~~~~~qIf~~GffHaDPHPGNilv~~~~~~~-~~ivllDhGl~~~is~  357 (538)
T KOG1235|consen  299 --GISPHDI---LNKLVEAYLEQIFKTGFFHADPHPGNILVRPNPEGD-EEIVLLDHGLYAVISH  357 (538)
T ss_pred             --CCCHHHH---HHHHHHHHHHHHHhcCCccCCCCCCcEEEecCCCCC-ccEEEEcccccccccH
Confidence              5665533   333333322 22346899999999999999653222 7899999999877655

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=98.06  E-value=5.6e-05  Score=73.87  Aligned_cols=152  Identities=16%  Similarity=0.118  Sum_probs=93.9

Q ss_pred             CCeEEeeeecccCceeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceE
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVV  275 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV  275 (588)
                      .+|...+++-......|.+-...|..+.+|..++....  ....++.+.      ......+++..+..+... .--...
T Consensus        31 ~~~~~~kv~k~~~r~~ValIei~~~kyIlK~pr~~~~r--~er~~~sf~------kg~~~~~l~~~~~~i~~~-g~~~~~  101 (229)
T PF06176_consen   31 NNYKIIKVFKNTKRNYVALIEIDGKKYILKEPREENRR--PERRFKSFF------KGSEYSRLINNTDKIRNE-GFTEPA  101 (229)
T ss_pred             CCceEEEeecCCCccEEEEEEECCcEEEEeccchhhhh--HHHHHHHHh------ccHHHHHHHHHHHHHHHc-Cccccc
Confidence            77888888888888889988888999999997542211  111112222      223334455544444211 112222


Q ss_pred             EEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCC-cHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy4039         276 VMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNT-DLRNYLRERCAQLSMHERVLLFTQLLEGVT  354 (588)
Q Consensus       276 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~g-sL~~~L~~~~~~l~~~~~~~i~~ql~~gL~  354 (588)
                      .++.+.+..                       ...-....+++|||++| .|.+..     .+++    .+...+.+++.
T Consensus       102 ~~yl~~ekk-----------------------~~~~~~~~~ll~EYIeG~~l~d~~-----~i~e----~~~~ki~~~ik  149 (229)
T PF06176_consen  102 DPYLAAEKK-----------------------IFRYTSSYVLLMEYIEGVELNDIE-----DIDE----DLAEKIVEAIK  149 (229)
T ss_pred             cceeeeeee-----------------------eccceeEEEEEEEEecCeecccch-----hcCH----HHHHHHHHHHH
Confidence            222222221                       11112246789999965 555442     2232    24466778899


Q ss_pred             HHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccc
Q psy4039         355 HLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYT  394 (588)
Q Consensus       355 yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~  394 (588)
                      -||+.|+.|+|..|.|++++++      .++++||+..+.
T Consensus       150 qlH~~G~~HGD~hpgNFlv~~~------~i~iID~~~k~~  183 (229)
T PF06176_consen  150 QLHKHGFYHGDPHPGNFLVSNN------GIRIIDTQGKRM  183 (229)
T ss_pred             HHHHcCCccCCCCcCcEEEECC------cEEEEECccccc
Confidence            9999999999999999999865      589999987654

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=97.85  E-value=3.7e-05  Score=76.02  Aligned_cols=74  Identities=23%  Similarity=0.266  Sum_probs=56.3

Q ss_pred             EEEEEecCCCc--HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh-CCceeccCCCCcEEEcCCCCCCCCceeeecccc
Q psy4039         315 LFILMKKYNTD--LRNYLRERCAQLSMHERVLLFTQLLEGVTHLNM-HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGS  391 (588)
Q Consensus       315 l~lvme~~~gs--L~~~L~~~~~~l~~~~~~~i~~ql~~gL~yLH~-~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGl  391 (588)
                      -.+||||.+..  -.-.|++-  .+...++..+..++++.+.-|-. .++||+||..=|||+. +     +.+.|+|||.
T Consensus       141 nVLvMEfIg~~g~pAP~LkDv--~~e~~e~~~~~~~~v~~~~~l~~~a~LVHgDLSEyNiL~~-~-----~~p~iID~~Q  212 (268)
T COG1718         141 NVLVMEFIGDDGLPAPRLKDV--PLELEEAEGLYEDVVEYMRRLYKEAGLVHGDLSEYNILVH-D-----GEPYIIDVSQ  212 (268)
T ss_pred             CeEEEEeccCCCCCCCCcccC--CcCchhHHHHHHHHHHHHHHHHHhcCcccccchhhheEEE-C-----CeEEEEECcc
Confidence            57899999532  22222222  44455788899999999999887 8999999999999999 4     5788999998


Q ss_pred             ccccC
Q psy4039         392 SYTNK  396 (588)
Q Consensus       392 a~~~~  396 (588)
                      |....
T Consensus       213 aV~~~  217 (268)
T COG1718         213 AVTID  217 (268)
T ss_pred             ccccC
Confidence            86544

>KOG0576|consensus

Probab=97.79  E-value=5.4e-06  Score=90.59  Aligned_cols=245  Identities=17%  Similarity=0.095  Sum_probs=149.3

Q ss_pred             eEEeeeecccCceeEEEEEEC-CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc-eE
Q psy4039         198 IQIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN-VV  275 (588)
Q Consensus       198 ~~~~~~IG~G~fG~Vy~a~~~-g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN-IV  275 (588)
                      +..-...++|+++.+||.+.. .+....+.+..                      .....-++++|.++    +||| .+
T Consensus       244 s~~fh~fvK~altknpKkRptaeklL~h~fvs~----------------------~l~~rl~~eLLdK~----n~P~~~v  297 (829)
T KOG0576|consen  244 SEFFHNFVKGALTKNPKKRPTAEKLLQHPFVSQ----------------------TLSRRLAIELLDKV----NNPNPVV  297 (829)
T ss_pred             hHHHHHHHHHHhcCCCccCCChhhheeceeecc----------------------chhhHHHHHHHHHc----cCCCCcc
Confidence            344556789999999998765 23333444411                      01123378888888    9999 43


Q ss_pred             EEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCC-C-cHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         276 VMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYN-T-DLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       276 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~-g-sL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      ..++-++.                            ....++.|++++ + +-..........+...+...+.+.-++++
T Consensus       298 ~~~~d~~~----------------------------E~~~~i~~~i~s~~rs~~~~~~~se~~~~~~~~~~~~r~et~~l  349 (829)
T KOG0576|consen  298 RYLEDYDG----------------------------EDYLWIPMRICSTGRSSALEMTVSEIALEQYQFAYPLRKETRPL  349 (829)
T ss_pred             cccccCCc----------------------------ccccchhhhhhcCCccccccCChhhHhhhhhhhhhhhhhhcccc
Confidence            33322221                            224788899884 3 22221111112355556667778888999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN  433 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~  433 (588)
                      +|||+.-=+|||    ||+..++      ..+.+||+....+....      ......+|+.++|||+.....      +
T Consensus       350 ~~l~~~~~~~~d----~~l~s~~------~~~~~~~~v~~~L~~~~------~~~t~~~~~~~~~pev~~~~~------~  407 (829)
T KOG0576|consen  350 AELHSSYKVHRD----NILGSEE------EVKLLDFAVPPQLTRTM------KPRTAIGTPEPLAPEVIQENT------I  407 (829)
T ss_pred             cccccccccCcc----ccccccc------ccccccccCCcccCccc------ccccCCCCCCCCCchhhcccc------c
Confidence            999998789999    8888754      67899999887765532      122567999999999987765      3


Q ss_pred             CCcCchhhHHHHHHHHhcCCCCCccccccccccccc--cCCCC--CCccH-HHHHHHHHhhhhCCCCCCCHHHHHH----
Q psy4039         434 YSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNA--LPQLN--TNVPE-VMRRLVAKLLENDPSDRPSAELAAT----  504 (588)
Q Consensus       434 ~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~~~--~~~~~--~~~~~-~l~~Li~~~L~~dP~~Rps~~e~l~----  504 (588)
                      ..+.|+||.|+-..++.-|.+|-.............  .+.+.  ...++ .-.++...|+..-|..|+....++-    
T Consensus       408 ~~~p~~~~~~~~~~~~ap~~pPr~~P~~~~~~~g~~p~s~~L~~~~aw~~~~~~~~~~~~~~g~P~~pkv~mgacfsKvf  487 (829)
T KOG0576|consen  408 DGCPDSGSLAVSAIQMAPGLPPRSSPPAVLPMIGNGPNSPMLTDKSAWSPVFHRDFPAPCLNGLPPTPKVHMGACFSKVF  487 (829)
T ss_pred             ccCCCccCCCcchhhcCCCCCCCCCCccccCCCCCCCCccccchhhhcCcccccCCcccccCCCCCCCcchhhHHHHHHh
Confidence            356899999998888888877754421110000000  00000  00011 1124777899999999988766543    


Q ss_pred             -HHhhhhhcCCcccc
Q psy4039         505 -VCQLYLWAPKHWLY  518 (588)
Q Consensus       505 -~L~~~~~~~h~w~~  518 (588)
                       -+..-.-+..+|+-
T Consensus       488 ngCpl~i~~aaswIh  502 (829)
T KOG0576|consen  488 NGCPLRIHCAASWIH  502 (829)
T ss_pred             ccCcccceecccccC
Confidence             12222345677775

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=97.75  E-value=0.00035  Score=69.31  Aligned_cols=29  Identities=17%  Similarity=0.174  Sum_probs=24.9

Q ss_pred             CceeccCCCCcEEEcCCCCCCCCceeeeccccccc
Q psy4039         360 RTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYT  394 (588)
Q Consensus       360 ~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~  394 (588)
                      .++|+|+.|.||+++++     + +.|+||+.+..
T Consensus       154 ~~~HgD~~~~Nii~~~~-----~-~~iIDwe~a~~  182 (226)
T TIGR02172       154 TCLHGDFQIGNLITSGK-----G-TYWIDLGDFGY  182 (226)
T ss_pred             ceEecCCCCCcEEEcCC-----C-cEEEechhcCc
Confidence            57899999999999876     5 78999998743

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2

Probab=97.74  E-value=0.00041  Score=67.06  Aligned_cols=161  Identities=18%  Similarity=0.129  Sum_probs=94.9

Q ss_pred             CCeEEeeeecccCc-eeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhh-hh----cccccchhhhHHHHHhhhcCCC
Q psy4039         196 DDIQIGKFIAKGTN-AVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSK-EL----LPLRKPLRLNEDMLMNSVENLP  269 (588)
Q Consensus       196 ~~~~~~~~IG~G~f-G~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~-e~----~~~~~~~~~~Ei~il~~l~~l~  269 (588)
                      .+++..+.||.|+- |.||++...|+.||+|+++......... ....+.. +.    .......|..|-+...+|... 
T Consensus        37 ~~I~flefLg~g~~~~~V~kv~I~g~~YALKlf~~~~~~~~~~-~~~~~~~~~~~~~~~~~y~~PF~~ECRAfgRLke~-  114 (207)
T PF13095_consen   37 DDIEFLEFLGHGSHDGYVFKVEIDGRIYALKLFRFWDYTEPDY-TRERFAGHETSLSTPAHYADPFNCECRAFGRLKEA-  114 (207)
T ss_pred             CcEeeeeecCCCCceeEEEEEEECCeEEEEEEeeccccCCCcc-ccccccccccccchhhhhcChHHHHHHhhHHHHhc-
Confidence            78999999999999 9999999999999999953322221100 0000000 00    011233566676655555322 


Q ss_pred             CCCce--EEEeeeeeccC-CCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHH
Q psy4039         270 PHPNV--VVMHFAFTDFV-PSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLF  346 (588)
Q Consensus       270 ~HpNI--V~l~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~  346 (588)
                      .+.++  |+.+||..-.. ........   ...        ........-||.||....-         .++.    .-+
T Consensus       115 ~~e~~~Avkc~Gyl~L~~~~q~~~~~~---~~~--------~~~~~~~~aIVKD~v~~~~---------~~~~----~~~  170 (207)
T PF13095_consen  115 GREGLWAVKCHGYLLLTEDQQFEQLRQ---RGS--------DHRPLPIRAIVKDFVPDDP---------PLQI----RDI  170 (207)
T ss_pred             cccCceEEEeeEEEEEchHHHHHHhhc---ccc--------cCCCCccEEEEEeecCCcc---------ccch----hHH
Confidence            45566  89999985321 00000000   000        0111223678888874211         2222    334


Q ss_pred             HHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccc
Q psy4039         347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSS  392 (588)
Q Consensus       347 ~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla  392 (588)
                      .+|.+-+.-+|..||+-+|+|+.|.. +         -||+|||.+
T Consensus       171 ~~~~~dl~~~~k~gI~~~Dv~~~ny~-~---------G~lvDfs~~  206 (207)
T PF13095_consen  171 PQMLRDLKILHKLGIVPRDVKPRNYR-G---------GKLVDFSSS  206 (207)
T ss_pred             HHHHHHHHHHHHCCeeeccCcccccc-C---------CEEEecccC
Confidence            66777788999999999999999975 2         259999964

>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

Probab=97.67  E-value=0.00019  Score=67.39  Aligned_cols=129  Identities=26%  Similarity=0.280  Sum_probs=86.4

Q ss_pred             eEEeeeecccCceeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceE-E
Q psy4039         198 IQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVV-V  276 (588)
Q Consensus       198 ~~~~~~IG~G~fG~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV-~  276 (588)
                      ....+.||+|++|.||+|.+.|.++|+|+=+..+                   .+..+..|.++|..+    .-.++- +
T Consensus        24 ~~v~~~L~KG~~s~Vyl~~~~~~~~a~Kvrr~ds-------------------~r~~l~kEakiLeil----~g~~~~p~   80 (201)
T COG2112          24 LRVEKELAKGTTSVVYLGEWRGGEVALKVRRRDS-------------------PRRNLEKEAKILEIL----AGEGVTPE   80 (201)
T ss_pred             hhhhhhhhcccccEEEEeeccCceEEEEEecCCc-------------------chhhHHHHHHHHHHh----hhcCCCce
Confidence            3456789999999999999999999999864321                   445566788888877    333332 3


Q ss_pred             EeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCC-cHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q psy4039         277 MHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNT-DLRNYLRERCAQLSMHERVLLFTQLLEGVTH  355 (588)
Q Consensus       277 l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~g-sL~~~L~~~~~~l~~~~~~~i~~ql~~gL~y  355 (588)
                      +|.+-.                                -++.|||.+| .|.+.-...    +    .+-+..+++.---
T Consensus        81 vy~yg~--------------------------------~~i~me~i~G~~L~~~~~~~----~----rk~l~~vlE~a~~  120 (201)
T COG2112          81 VYFYGE--------------------------------DFIRMEYIDGRPLGKLEIGG----D----RKHLLRVLEKAYK  120 (201)
T ss_pred             EEEech--------------------------------hhhhhhhhcCcchhhhhhcc----c----HHHHHHHHHHHHH
Confidence            443322                                4556999976 666554311    1    2334455666445


Q ss_pred             HHhCCceeccCCC--CcEEEcCCCCCCCCceeeecccccccc
Q psy4039         356 LNMHRTAHRDLKS--DNILLDCSEDNTCPQLVITDFGSSYTN  395 (588)
Q Consensus       356 LH~~~IvHrDLKp--~NILld~~~~~~~~~vkL~DFGla~~~  395 (588)
                      |-..||-|..|.-  .||++.+      ..+.|+||.-|+.-
T Consensus       121 LD~~GI~H~El~~~~k~vlv~~------~~~~iIDFd~At~k  156 (201)
T COG2112         121 LDRLGIEHGELSRPWKNVLVND------RDVYIIDFDSATFK  156 (201)
T ss_pred             HHHhccchhhhcCCceeEEecC------CcEEEEEccchhhc
Confidence            6678999999873  4666654      36789999988743

>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP

Probab=97.59  E-value=0.00073  Score=65.57  Aligned_cols=150  Identities=20%  Similarity=0.167  Sum_probs=94.6

Q ss_pred             eeeecccCceeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhc-ccccchhhhHHHHHhhhc--CCCCCCceEEE
Q psy4039         201 GKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELL-PLRKPLRLNEDMLMNSVE--NLPPHPNVVVM  277 (588)
Q Consensus       201 ~~~IG~G~fG~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~-~~~~~~~~~Ei~il~~l~--~l~~HpNIV~l  277 (588)
                      ...||+|+.=.||.--. .....||++....  .......+.+.+... ........+|+.....+.  +...+..|.++
T Consensus         6 ~~~i~~G~~R~cy~HP~-dp~~cIKV~~~~~--~~~~~~~~~~~k~~~~~~~~~~~~~E~~~y~~l~~~~~~~~~~i~r~   82 (199)
T PF10707_consen    6 SDLIAQGGERDCYQHPD-DPNLCIKVMRPDR--GERRRPFKRWLKRLRPKSRYRQNRRELRYYKQLSLRRGVDWSHIPRF   82 (199)
T ss_pred             CcccccCCCceEEECCC-CCCeEEEEEcccc--ccccccchhHHHhhcccchhHHHHHHHHHHHHHhhccCCcccccccE
Confidence            45799999999986322 4568899986543  111111111111111 123445566776555553  22358899999


Q ss_pred             eeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC---CC----cHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy4039         278 HFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY---NT----DLRNYLRERCAQLSMHERVLLFTQLL  350 (588)
Q Consensus       278 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~---~g----sL~~~L~~~~~~l~~~~~~~i~~ql~  350 (588)
                      +|+.++..                            .+-+|+|..   +|    +|.+++...  .+++ ..   ...+-
T Consensus        83 ~G~veT~~----------------------------G~Glv~e~I~d~dG~~s~TL~~~l~~~--~~~~-~~---~~~L~  128 (199)
T PF10707_consen   83 YGFVETNL----------------------------GLGLVVELIRDADGNISPTLEDYLKEG--GLTE-EL---RQALD  128 (199)
T ss_pred             eEEEecCC----------------------------ceEEEEEEEECCCCCcCccHHHHHHcC--CccH-HH---HHHHH
Confidence            99988632                            256777765   23    789998655  5665 33   33344


Q ss_pred             HHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeec
Q psy4039         351 EGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITD  388 (588)
Q Consensus       351 ~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~D  388 (588)
                      +-..||-+.+|+.+|++|+||++....+.. ..++|+|
T Consensus       129 ~f~~~l~~~~Iv~~dl~~~NIv~~~~~~~~-~~lvlID  165 (199)
T PF10707_consen  129 EFKRYLLDHHIVIRDLNPHNIVVQRRDSGE-FRLVLID  165 (199)
T ss_pred             HHHHHHHHcCCeecCCCcccEEEEecCCCc-eEEEEEe
Confidence            456788999999999999999998774433 4677777

PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=97.58  E-value=0.00068  Score=66.34  Aligned_cols=28  Identities=25%  Similarity=0.268  Sum_probs=24.7

Q ss_pred             eeeecccCceeEEEEEECCeeEEEEEEe
Q psy4039         201 GKFIAKGTNAVVYEATFRGVEYALKMMF  228 (588)
Q Consensus       201 ~~~IG~G~fG~Vy~a~~~g~~vAVK~i~  228 (588)
                      .+.|+.|..+.||+....+..+++|...
T Consensus         2 i~~l~~G~~n~~~~v~~~~~~~vlK~~~   29 (239)
T PF01636_consen    2 IRPLSGGFSNRVYRVTTDDGRYVLKFYR   29 (239)
T ss_dssp             EEEEEESSSSEEEEEEETTSEEEEEEES
T ss_pred             CccCCCCCeeeEEEEEECCcEEEEEEeC
Confidence            4678999999999999988899999973

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>KOG1035|consensus

Probab=97.55  E-value=0.00014  Score=84.63  Aligned_cols=202  Identities=19%  Similarity=0.141  Sum_probs=128.1

Q ss_pred             HHHHHhhhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCC-CcHHHHHHHhcCC
Q psy4039         258 EDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYN-TDLRNYLRERCAQ  336 (588)
Q Consensus       258 Ei~il~~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~-gsL~~~L~~~~~~  336 (588)
                      |+..+..+    .|+|++.++.|-....                        +++.-+.+..++|. -++...+..-+ .
T Consensus       232 e~~~l~k~----~~~n~~~~~~~~le~~------------------------~~g~~~~v~~~~~s~~~~~~~~q~v~-~  282 (1351)
T KOG1035|consen  232 ELESLSKI----AHDNLGGYFVYGLERL------------------------FRGIVLDVLQEICSKVELRSLLQSVG-S  282 (1351)
T ss_pred             HHHHHHhh----ccccccceeEEeehhh------------------------cchHHHHHHHhhcCccchHHHHhhcc-c
Confidence            34444444    8999999887765422                        11112334455664 46777666544 7


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCceeccCCCC---cEEEcCCCCCCCCceeee--ccccccccCCCCcccccccccccc
Q psy4039         337 LSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSD---NILLDCSEDNTCPQLVIT--DFGSSYTNKSGLSMQYSSADIELG  411 (588)
Q Consensus       337 l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~---NILld~~~~~~~~~vkL~--DFGla~~~~~~~~~~~~~~~~~~~  411 (588)
                      .+....+.+..+..+||.|+|+....|.-+..+   +--.+.+     +...++  ||+..+........      ....
T Consensus       283 i~~~~~r~~~~~~~~GL~~~h~~~l~~v~L~~s~~~~~~~~~e-----~~~~~sl~~~~ss~~l~d~~~~------~~~~  351 (1351)
T KOG1035|consen  283 IPLETLRILHQKLLEGLAYLHSLSLEHVVLSASSSKESTVDGE-----GVVAISLSDFDSSKPLPDNEKS------FSDL  351 (1351)
T ss_pred             cCHHHHHHHHHHHhhhHHHHHHhccceeEEecccccccccCcc-----ceeecchhhhcccccCCCcccc------hhhc
Confidence            888999999999999999999986655554444   2222222     445555  88877665442111      0112


Q ss_pred             CCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccccccccCCCCCCccHHHHHHHHHhhhh
Q psy4039         412 GNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLEN  491 (588)
Q Consensus       412 GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~l~~Li~~~L~~  491 (588)
                      -+..+.|||.........    ....|+|.+|.....+..|..+-........       -++........+.+.+|+.-
T Consensus       352 ~~~~~~~~e~~~~~~~~~----~r~~dL~~lgll~~~~~~~~~i~~~~~~~~~-------~l~~~~~~~~~d~~~~~~~~  420 (1351)
T KOG1035|consen  352 LAEIRNADEDLKENTAKK----SRLTDLWCLGLLLLQLSQGEDISEKSAVPVS-------LLDVLSTSELLDALPKCLDE  420 (1351)
T ss_pred             Cccccccccccccccchh----hhhhHHHHHHHHHhhhhhcCcccccccchhh-------hhccccchhhhhhhhhhcch
Confidence            344677888876655321    1346999999999999987655222111111       11122222678899999999


Q ss_pred             CCCCCCCHHHHHHHHhhhhhcCCccccC
Q psy4039         492 DPSDRPSAELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       492 dP~~Rps~~e~l~~L~~~~~~~h~w~~~  519 (588)
                      ++++|+++.+++.         |++++.
T Consensus       421 ~~~~Rl~~~~ll~---------~~f~~~  439 (1351)
T KOG1035|consen  421 DSEERLSALELLT---------HPFLRF  439 (1351)
T ss_pred             hhhhccchhhhhh---------chhccc
Confidence            9999999999998         888873

>PLN02876 acyl-CoA dehydrogenase

Probab=97.46  E-value=0.0007  Score=79.82  Aligned_cols=64  Identities=13%  Similarity=0.055  Sum_probs=41.8

Q ss_pred             eeeecccCceeEEEEEECC----eeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCce--
Q psy4039         201 GKFIAKGTNAVVYEATFRG----VEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNV--  274 (588)
Q Consensus       201 ~~~IG~G~fG~Vy~a~~~g----~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNI--  274 (588)
                      ...|+.|.+..+|+....+    ..+++|+.......                .....+.+|..+|+.+   ..|++|  
T Consensus        43 v~~l~gG~sn~ty~l~~~~~~~~~~~VLR~~p~~~~~----------------~~~~~~~rE~~~l~~L---~~~~~vpV  103 (822)
T PLN02876         43 VSQFGHGQSNPTFLLEVGNGGSVKRYVLRKKPPGKLL----------------QSAHAVEREYQVLRAL---GEHTDVPV  103 (822)
T ss_pred             EEEeCCCCcCceEEEEECCCCcceeEEEEeCCCCccC----------------ccHHHHHHHHHHHHHH---hhcCCCCC
Confidence            4678999999999987764    47888875321110                1223466799999887   235554  


Q ss_pred             EEEeeeeec
Q psy4039         275 VVMHFAFTD  283 (588)
Q Consensus       275 V~l~~~~~~  283 (588)
                      .+++.+|.+
T Consensus       104 P~v~~~~~d  112 (822)
T PLN02876        104 PKVYCLCTD  112 (822)
T ss_pred             CcEEEEecC
Confidence            566766655

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=97.37  E-value=0.0015  Score=65.32  Aligned_cols=30  Identities=23%  Similarity=0.144  Sum_probs=25.6

Q ss_pred             CCceeccCCCCcEEEcCCCCCCCCceeeecccccc
Q psy4039         359 HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSY  393 (588)
Q Consensus       359 ~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~  393 (588)
                      ..++|+|+.|.|||++.+     ..+.|+||+.|.
T Consensus       163 ~~l~HgD~~~~Nil~~~~-----~~~~iIDwe~a~  192 (244)
T cd05150         163 LVVTHGDACLPNIIVDPG-----KFSGFIDLGRLG  192 (244)
T ss_pred             eEEECCCCCCccEEEeCC-----cEEEEEEccccc
Confidence            358999999999999976     567799999874

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C)

Probab=97.19  E-value=0.001  Score=64.13  Aligned_cols=98  Identities=18%  Similarity=0.183  Sum_probs=74.3

Q ss_pred             hHHHHHhhhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCC-CcHHHH---HHH
Q psy4039         257 NEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYN-TDLRNY---LRE  332 (588)
Q Consensus       257 ~Ei~il~~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~-gsL~~~---L~~  332 (588)
                      .|.-+|+.+   ...+++.+++|+|-                                -+++.||.+ +++...   +..
T Consensus         8 ~E~lll~~l---~~~~~~pk~lG~CG--------------------------------~~~v~E~~~~~~~~~~~~~l~~   52 (188)
T PF12260_consen    8 NEPLLLQLL---QGSEPFPKLLGSCG--------------------------------RFYVVEYVGAGSLYGIYRPLSQ   52 (188)
T ss_pred             cHHHHHHHc---CCCCCCCCeeeECC--------------------------------CEEEEEeecCcccccccccccc
Confidence            477777776   23369999998873                                356888885 444311   111


Q ss_pred             hcCCCCHHHHHHHHHHHHHHHHHHHh---CCceeccCCCCcEEEcCCCCCCCCceeeecccccccc
Q psy4039         333 RCAQLSMHERVLLFTQLLEGVTHLNM---HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTN  395 (588)
Q Consensus       333 ~~~~l~~~~~~~i~~ql~~gL~yLH~---~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~  395 (588)
                       -...+|..+.+|+.++++.+.+|++   ..+.-.|++++|+-++++     +.+|++|...+...
T Consensus        53 -~~~~~w~~R~~iA~~lL~~l~~l~~~~~~~~~lcDv~~~nfgv~~~-----~~lk~iDld~v~~~  112 (188)
T PF12260_consen   53 -FLQSPWEQRAKIALQLLELLEELDHGPLGFFYLCDVSPDNFGVNDD-----GRLKLIDLDDVFVE  112 (188)
T ss_pred             -ccccCHHHHHHHHHHHHHHHHHHhcCCCCcEEEeecchHHeEEeCC-----CcEEEEechhcchh
Confidence             0156899999999999999999998   457779999999999987     89999999877543

Proteins in this uncharacterised family are described as transmembrane proteins.

>KOG0696|consensus

Probab=97.04  E-value=0.00032  Score=73.11  Aligned_cols=56  Identities=16%  Similarity=0.206  Sum_probs=46.1

Q ss_pred             hHHHHHHHHhhhhhhcCC--chhHHHhHHH------HHHhhhcCCCCccccc--ccccccCccccccccc
Q psy4039          59 QNARKLFVNSLLNRVTNS--MASDLRRKTI------QQLLYKDNSKPFLAFV--GVSLASGTGILTNRVT  118 (588)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~------~~l~~~~~~~pf~~~~--~~~~~~~~~~~~~~~~  118 (588)
                      .-.+.|+.++|.+|||.|  |-.|||.|+|      .+|=+++|+|||||-+  |.+.    .+||..||
T Consensus       579 ~ickg~ltK~P~kRLGcg~~ge~di~~H~FFR~iDWek~E~~eiqPPfkPk~k~~r~~----eNFD~~Ft  644 (683)
T KOG0696|consen  579 AICKGLLTKHPGKRLGCGPEGERDIREHPFFRRIDWEKLERREIQPPFKPKIKCGRDA----ENFDKFFT  644 (683)
T ss_pred             HHHHHHhhcCCccccCCCCccccchhhCcchhhccHHHHhhccCCCCCCCccccCCch----hhhhHHHh
Confidence            346789999999999999  8889999999      8999999999999987  3333    35565554

>KOG1826|consensus

Probab=96.77  E-value=0.0023  Score=76.67  Aligned_cols=175  Identities=10%  Similarity=-0.080  Sum_probs=115.9

Q ss_pred             eEEEEEecC-CCcHHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHhC-----CceeccCCCCcEEEcCCCCCCCCce
Q psy4039         314 SLFILMKKY-NTDLRNYLRER---CAQLSMHERVLLFTQLLEGVTHLNMH-----RTAHRDLKSDNILLDCSEDNTCPQL  384 (588)
Q Consensus       314 ~l~lvme~~-~gsL~~~L~~~---~~~l~~~~~~~i~~ql~~gL~yLH~~-----~IvHrDLKp~NILld~~~~~~~~~v  384 (588)
                      ..+..++++ .|.+.+.|-+.   ...++..-+.....+.+.+..-+|+.     -.+|++||+-|.+|+.+     .++
T Consensus      1305 ee~~r~~~~~~g~~f~iIikg~ee~~~ld~~~v~~~~kvsvl~~~~~ls~tnlg~T~v~~~Lkf~lpmIVtn-----y~v 1379 (2724)
T KOG1826|consen 1305 EEYIRSLYVEFGKLFSIIIKGLEESPDLDRSPVHLRHKVSVLNRNVILSLTNLGNTNVSKSLKFTLPMIVTN-----YNV 1379 (2724)
T ss_pred             HHHHHHHHHHHhHHHHHHHhccccCCcchhchHHHHHHHHHhccchhhhcccCCccchhhhhhhhccceecC-----Ccc
Confidence            478889998 68999988753   22455555555555557777777753     46899999999999988     789


Q ss_pred             eeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCccc---cc
Q psy4039         385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQS---AR  461 (588)
Q Consensus       385 kL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~---~~  461 (588)
                      +++++|+.+...+.     ........+++.|++|++...-.      ++.++|+|..|+.+|+...|..+|-.-   ..
T Consensus      1380 ~~gk~gLdKIknp~-----~sf~Gl~l~sp~~v~qli~N~ik------~t~rsdilr~s~~ly~rs~~n~~fi~flq~~L 1448 (2724)
T KOG1826|consen 1380 KLGKGGLDKIKNPV-----LSFFGLELCSPIYVLQLIKNEIK------FTKRSDILRRSLSLYLRSDGNAYFIFFLQPAL 1448 (2724)
T ss_pred             cccccccccccCch-----HhhhhhhhCCHHHHHHHHHHHHh------hhhHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            99999999843221     11122456888999999987654      345599999999999999998887441   11


Q ss_pred             cccccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHH
Q psy4039         462 NTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAAT  504 (588)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~  504 (588)
                      ...........++.-.|.++..+...+|-..-..||.-...+.
T Consensus      1449 kgiidn~tf~sIe~l~pgdaNve~~~~Ll~K~~~rp~q~isls 1491 (2724)
T KOG1826|consen 1449 KGIIDNHTFFSIEKLKPGDANVEALHRLLWKYMERPGQYISLS 1491 (2724)
T ss_pred             cCcccccccccccccCCCcccHHHHHHHHHHhhhcchhhhhcc
Confidence            1111111111223333444455555555555667777666554

>PRK10593 hypothetical protein; Provisional

Probab=96.76  E-value=0.025  Score=58.57  Aligned_cols=65  Identities=9%  Similarity=-0.038  Sum_probs=40.8

Q ss_pred             EEeeeecccCceeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEEe
Q psy4039         199 QIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMH  278 (588)
Q Consensus       199 ~~~~~IG~G~fG~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l~  278 (588)
                      .-.+.||.|..+.||+....+..+.||..+...                   ....+..|...|+.+.... --.+.+++
T Consensus        17 ~~~~~i~~G~~~~vy~~~~~~~~~~~k~~~~~~-------------------~~~~~~~Ea~~L~~L~~~~-~vpVP~V~   76 (297)
T PRK10593         17 SRVECISEQPYAALWALYDSQGNPMPLMARSFS-------------------TPGVAQQEAWKLSMLARSG-TVRMPTVY   76 (297)
T ss_pred             heeeecCCccceeEEEEEcCCCCEEEEEecccc-------------------cchHHHHHHHHHHHHccCC-CCCcCcEE
Confidence            345679999999999988765667888752100                   1235667888888873320 12344556


Q ss_pred             eeeec
Q psy4039         279 FAFTD  283 (588)
Q Consensus       279 ~~~~~  283 (588)
                      +++.+
T Consensus        77 ~~~~~   81 (297)
T PRK10593         77 GVMTH   81 (297)
T ss_pred             EEecc
Confidence            65543

>PRK09550 mtnK methylthioribose kinase; Reviewed

Probab=96.70  E-value=0.015  Score=62.38  Aligned_cols=69  Identities=14%  Similarity=0.067  Sum_probs=40.5

Q ss_pred             eeeecccCceeEEEEEECC--eeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEEe
Q psy4039         201 GKFIAKGTNAVVYEATFRG--VEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMH  278 (588)
Q Consensus       201 ~~~IG~G~fG~Vy~a~~~g--~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l~  278 (588)
                      .+.||.|.+..||++...+  +.|.||.-.++....          .+..+....+...|.+.|+.+... .-.++.+++
T Consensus        31 ~~elggGn~N~VyrV~~~~g~~svIVKqa~p~~r~~----------g~~wpl~~eR~~~Eae~L~~l~~~-~p~~VPkV~   99 (401)
T PRK09550         31 AREIGDGNLNLVFRVSDTEGGKSVIVKQALPYVRVV----------GESWPLTLDRARIEAEALKIQAKY-VPDLVPKVY   99 (401)
T ss_pred             eeEcCCCceEEEEEEEeCCCCeEEEEEecCcccccc----------cccccccHHHHHHHHHHHHHHHhh-CCCCCCeEE
Confidence            3579999999999999874  489999853221100          010112233445577777765322 123566666


Q ss_pred             ee
Q psy4039         279 FA  280 (588)
Q Consensus       279 ~~  280 (588)
                      .+
T Consensus       100 ~~  101 (401)
T PRK09550        100 HY  101 (401)
T ss_pred             EE
Confidence            55

>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes

Probab=96.67  E-value=0.017  Score=57.21  Aligned_cols=30  Identities=23%  Similarity=0.298  Sum_probs=25.3

Q ss_pred             CceeccCCCCcEEEcCCCCCCCCceeeecccccc
Q psy4039         360 RTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSY  393 (588)
Q Consensus       360 ~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~  393 (588)
                      +++|+|+.+.|||++.++    ..+.|+||..|.
T Consensus       171 ~l~H~Dl~~~Nil~~~~~----~~~~lIDwe~a~  200 (235)
T cd05157         171 VFCHNDLLSGNIIYNEEK----NSVKFIDYEYAG  200 (235)
T ss_pred             EEEcCCCCcCcEEEeCCC----CCEEEEEcccCC
Confidence            689999999999999721    468899999874

ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo

>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members

Probab=96.65  E-value=0.0093  Score=59.31  Aligned_cols=31  Identities=26%  Similarity=0.278  Sum_probs=25.1

Q ss_pred             CCceeccCCCCcEEEcCCCCCCCCceeeeccccccc
Q psy4039         359 HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYT  394 (588)
Q Consensus       359 ~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~  394 (588)
                      .+++|+|+.+.|||++.+     ...-|+||+.|..
T Consensus       164 ~~l~HGD~~~~Nvlv~~~-----~i~giIDw~~a~~  194 (235)
T cd05155         164 PVWFHGDLAPGNLLVQDG-----RLSAVIDFGCLGV  194 (235)
T ss_pred             ceEEeCCCCCCcEEEECC-----CEEEEEeCcccCc
Confidence            358999999999999865     4456999998744

The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista

>TIGR02721 ycfN_thiK thiamine kinase

Probab=96.46  E-value=0.02  Score=57.73  Aligned_cols=28  Identities=18%  Similarity=0.275  Sum_probs=24.3

Q ss_pred             CceeccCCCCcEEEcCCCCCCCCceeeecccccc
Q psy4039         360 RTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSY  393 (588)
Q Consensus       360 ~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~  393 (588)
                      .++|+|+.|.||+++.+     + +.|+||..|.
T Consensus       147 ~l~H~Dl~~~Nil~~~~-----~-~~lIDwE~a~  174 (256)
T TIGR02721       147 APLHMDVHAYNLVVTPQ-----G-LKLIDWEYAS  174 (256)
T ss_pred             eeecCCCCcCcEEEeCC-----C-CEEEeccccC
Confidence            58999999999999876     3 6799999874

Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.

>TIGR00938 thrB_alt homoserine kinase, Neisseria type

Probab=96.40  E-value=0.025  Score=58.68  Aligned_cols=29  Identities=31%  Similarity=0.378  Sum_probs=25.5

Q ss_pred             CCceeccCCCCcEEEcCCCCCCCCceeeeccccc
Q psy4039         359 HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSS  392 (588)
Q Consensus       359 ~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla  392 (588)
                      .+++|+|+.+.||+++.+     ....|+||+.+
T Consensus       187 ~~l~HgD~~~~Nvl~~~~-----~~~~vIDfd~~  215 (307)
T TIGR00938       187 RGVIHADLFPDNVLFDGD-----SVKGVIDFYFA  215 (307)
T ss_pred             CccCCCCCCcCcEEEECC-----ceEEEeecccc
Confidence            589999999999999876     45679999977

Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.

>cd05153 HomoserineK_II Homoserine Kinase, type II

Probab=96.36  E-value=0.014  Score=60.01  Aligned_cols=29  Identities=31%  Similarity=0.360  Sum_probs=25.2

Q ss_pred             CCceeccCCCCcEEEcCCCCCCCCceeeeccccc
Q psy4039         359 HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSS  392 (588)
Q Consensus       359 ~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla  392 (588)
                      .+++|+|+.|.|||++++     ..+.|.||+.|
T Consensus       175 ~~l~HgD~~~~Nil~~~~-----~~~~iIDfe~a  203 (296)
T cd05153         175 RGVIHADLFRDNVLFDGD-----ELSGVIDFYFA  203 (296)
T ss_pred             CcCCccCcCcccEEEeCC-----ceEEEeehhhh
Confidence            479999999999999876     45679999977

Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.

>KOG0695|consensus

Probab=96.32  E-value=0.0025  Score=64.87  Aligned_cols=60  Identities=15%  Similarity=0.125  Sum_probs=50.8

Q ss_pred             HHHHHHHHhhhhhhcCC---chhHHHhHHH------HHHhhhcCCCCcccccccccccCcccccccccccc
Q psy4039          60 NARKLFVNSLLNRVTNS---MASDLRRKTI------QQLLYKDNSKPFLAFVGVSLASGTGILTNRVTNSM  121 (588)
Q Consensus        60 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~------~~l~~~~~~~pf~~~~~~~~~~~~~~~~~~~~~~~  121 (588)
                      -|+.+|.++|..|||.-   |..|||.|+|      +-|-+|.+-|||+|.|.  +.-|-..||..||...
T Consensus       489 vlkgflnkdp~erlgc~~~~g~~dik~h~ffr~idwd~leqk~v~ppf~p~i~--~d~~l~~fd~qft~e~  557 (593)
T KOG0695|consen  489 VLKGFLNKDPKERLGCRPQTGFSDIKSHAFFRSIDWDLLEQKQVLPPFQPQIT--DDYGLDNFDTQFTSEP  557 (593)
T ss_pred             HHHHhhcCCcHHhcCCCcccchhhhhcchhhhhCCHHHHhhcccCCCCCCccc--cccCccccccccccCC
Confidence            37899999999999876   9999999999      67779999999999984  4346667899998654

>TIGR01767 MTRK 5-methylthioribose kinase

Probab=96.29  E-value=0.035  Score=58.66  Aligned_cols=67  Identities=15%  Similarity=0.086  Sum_probs=39.7

Q ss_pred             eecccCceeEEEEEECC--eeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEEeee
Q psy4039         203 FIAKGTNAVVYEATFRG--VEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFA  280 (588)
Q Consensus       203 ~IG~G~fG~Vy~a~~~g--~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l~~~  280 (588)
                      .||.|....||++...+  +.|+||.-..+.         +. ..+..++...+..-|...|+....+.. ..+.++|.+
T Consensus         2 EigdGnlN~VfrV~~~~g~~svIVKQAlp~v---------Rv-~g~~wpl~~~R~~~E~~~L~~~~~~~P-~~vP~vy~~   70 (370)
T TIGR01767         2 EVGDGNLNLVFHVYDQEGDRAAIVKQALPYV---------RV-VGESWPLTLDRARIESSALIRQGEHVP-HLVPRIFHF   70 (370)
T ss_pred             cCCCCceEEEEEEEcCCCCeeEEEEEcCHHH---------hh-cCCCCCCCccHHHHHHHHHHHhhccCc-cccCeEEEE
Confidence            58999999999999874  589999853211         11 112223444455567777776533222 144456544

This enzyme is involved in the methionine salvage pathway in certain bacteria.

>KOG0605|consensus

Probab=96.23  E-value=0.0022  Score=69.20  Aligned_cols=49  Identities=20%  Similarity=0.333  Sum_probs=40.5

Q ss_pred             HHHHHHHhhhhhhcCCchhHHHhHHH------HHHhhhcCCCCcccccccccccCccccc
Q psy4039          61 ARKLFVNSLLNRVTNSMASDLRRKTI------QQLLYKDNSKPFLAFVGVSLASGTGILT  114 (588)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~~~~~pf~~~~~~~~~~~~~~~~  114 (588)
                      ..+|+. ||.+|||++|++|||.|||      +.|+..  .|||.|-|--..  ||++|+
T Consensus       423 I~rll~-d~~~RLG~~G~~EIK~HPfF~~v~W~~l~~~--~apfvP~v~~~~--DT~yFd  477 (550)
T KOG0605|consen  423 ITRLLC-DPENRLGSKGAEEIKKHPFFKGVDWDHLREM--PAPFVPQVNSEL--DTQYFD  477 (550)
T ss_pred             HHHHhc-CHHHhcCcccHHHHhcCCccccCCcchhhcC--CCCCCCCCCCcc--cccccc
Confidence            567888 9999999889999999999      677654  499999996666  666666

>PRK05231 homoserine kinase; Provisional

Probab=96.22  E-value=0.077  Score=55.20  Aligned_cols=29  Identities=28%  Similarity=0.308  Sum_probs=24.6

Q ss_pred             CCceeccCCCCcEEEcCCCCCCCCceeeeccccc
Q psy4039         359 HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSS  392 (588)
Q Consensus       359 ~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla  392 (588)
                      .+++|+|+.|.|||++.+     ...-|+||+.|
T Consensus       187 ~~liHgD~~~~Nil~~~~-----~~~~iIDf~~~  215 (319)
T PRK05231        187 RGVIHADLFRDNVLFEGD-----RLSGFIDFYFA  215 (319)
T ss_pred             cccCCCCCCCCcEEEECC-----ceEEEEecccc
Confidence            489999999999999855     34569999987

>KOG0610|consensus

Probab=96.19  E-value=0.0019  Score=67.66  Aligned_cols=42  Identities=21%  Similarity=0.282  Sum_probs=34.9

Q ss_pred             hHHHHHHHHhhhhhhcCC-chhHHHhHHH-----HHHhhhcCCCCcccc
Q psy4039          59 QNARKLFVNSLLNRVTNS-MASDLRRKTI-----QQLLYKDNSKPFLAF  101 (588)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~l~~~~~~~pf~~~  101 (588)
                      .-.|+||++||.+|||.- ||+|||+|+|     -. +=+...||+-|-
T Consensus       366 DLIr~LLvKdP~kRlg~~rGA~eIK~HpFF~gVnWa-Lir~~~PP~iP~  413 (459)
T KOG0610|consen  366 DLIRKLLVKDPSKRLGSKRGAAEIKRHPFFEGVNWA-LIRCARPPEIPK  413 (459)
T ss_pred             HHHHHHhccChhhhhccccchHHhhcCccccCCChh-heeccCCCcCCC
Confidence            347999999999999877 9999999999     23 446788999664

>KOG2268|consensus

Probab=95.95  E-value=0.0033  Score=64.57  Aligned_cols=153  Identities=18%  Similarity=0.212  Sum_probs=92.4

Q ss_pred             eEEeeeecccCceeEEEEEEC-CeeEEEEEEecCCCCc-----chHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCC
Q psy4039         198 IQIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAAS-----NSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPH  271 (588)
Q Consensus       198 ~~~~~~IG~G~fG~Vy~a~~~-g~~vAVK~i~~~~~~~-----~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~H  271 (588)
                      +.+++.||-|-=+-||.+.+. |++.++|.-+....+.     +..+..+.-...+.-+++-...+|+..|+.+.   .|
T Consensus        94 ~svGnqIGVGKESDIY~v~d~~G~~~~lK~HRLGRtSFR~Vk~kRDY~r~r~~~sWlyLSRlaa~kEfafmkaL~---e~  170 (465)
T KOG2268|consen   94 ESVGNQIGVGKESDIYVVADEEGNPLILKLHRLGRTSFRNVKNKRDYLRKRKSGSWLYLSRLAATKEFAFMKALY---ER  170 (465)
T ss_pred             hhhccccccccccceEEEecCCCCchhHHHHhhhhhhHHHhhhhhhhHhcCCccchhhhHHHHHHHHHHHHHHHH---Hc
Confidence            567899999999999999997 8999999754332221     11111111111122333334456888888771   12


Q ss_pred             CceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCC-cHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy4039         272 PNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNT-DLRNYLRERCAQLSMHERVLLFTQLL  350 (588)
Q Consensus       272 pNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~g-sL~~~L~~~~~~l~~~~~~~i~~ql~  350 (588)
                      --=                        .|..++       ...-++|||+..| .|.+.-+    ..+   .-.+...+.
T Consensus       171 gfp------------------------VPkpiD-------~~RH~Vvmelv~g~Pl~~v~~----v~d---~~~ly~~lm  212 (465)
T KOG2268|consen  171 GFP------------------------VPKPID-------HNRHCVVMELVDGYPLRQVRH----VED---PPTLYDDLM  212 (465)
T ss_pred             CCC------------------------CCCccc-------ccceeeHHHhhcccceeeeee----cCC---hHHHHHHHH
Confidence            110                        111111       1125778888754 3332211    112   223444555


Q ss_pred             HHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccC
Q psy4039         351 EGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNK  396 (588)
Q Consensus       351 ~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~  396 (588)
                      .-+.-|-.+|+||+|..-=||+++++     ..++++||--+-...
T Consensus       213 ~~Iv~la~~GlIHgDFNEFNimv~dd-----~~i~vIDFPQmvS~s  253 (465)
T KOG2268|consen  213 GLIVRLANHGLIHGDFNEFNIMVKDD-----DKIVVIDFPQMVSTS  253 (465)
T ss_pred             HHHHHHHHcCceecccchheeEEecC-----CCEEEeechHhhccC
Confidence            55677888999999999999999977     789999998765443

>PRK12396 5-methylribose kinase; Reviewed

Probab=95.77  E-value=0.044  Score=58.63  Aligned_cols=68  Identities=16%  Similarity=0.084  Sum_probs=43.1

Q ss_pred             eeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEEe
Q psy4039         201 GKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMH  278 (588)
Q Consensus       201 ~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l~  278 (588)
                      .+.||.|.-..||++.+.  ++.|+||.-..+.         +  ..+..++...+..-|.+.|+....+.. ..+.++|
T Consensus        34 ~~eigdGnlN~VfrV~~~~~~~svIVKQAlp~v---------R--v~~swpL~~~R~~~E~~aL~~~~~~~P-~~VP~vy  101 (409)
T PRK12396         34 CKEIGDGNLNYVFRVWDEQKNISVIVKQAGDTA---------R--ISDEFKLSTNRIRIESDVLQLEEELAP-GLVPKVY  101 (409)
T ss_pred             eeEcCCCceEEEEEEeeCCCCceEEEEeccHhh---------c--cCCCCCCChHHHHHHHHHHHHHHhhCC-CcCCeEE
Confidence            567899999999999985  6789999853211         1  122234455556668888877643321 2355666


Q ss_pred             ee
Q psy4039         279 FA  280 (588)
Q Consensus       279 ~~  280 (588)
                      .+
T Consensus       102 ~~  103 (409)
T PRK12396        102 LF  103 (409)
T ss_pred             EE
Confidence            54

>KOG0616|consensus

Probab=95.32  E-value=0.01  Score=59.92  Aligned_cols=41  Identities=22%  Similarity=0.313  Sum_probs=37.9

Q ss_pred             HHHHHHHHhhhhhhcCC--chhHHHhHHH------HHHhhhcCCCCccc
Q psy4039          60 NARKLFVNSLLNRVTNS--MASDLRRKTI------QQLLYKDNSKPFLA  100 (588)
Q Consensus        60 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~------~~l~~~~~~~pf~~  100 (588)
                      -+++|+..|-..|+|+-  |.+|||+|+|      .+++.|+|+|||.|
T Consensus       271 Ll~~LL~vD~t~R~gnlknG~~dIk~H~wF~~v~W~~i~~r~ie~P~~p  319 (355)
T KOG0616|consen  271 LLKKLLQVDLTKRFGNLKNGVEDIKNHPWFKGVDWEAILQRKIEPPFEP  319 (355)
T ss_pred             HHHHHHhhhhHhhhcCcCCCccccccCcccccccHHHHhhccccCCCCC
Confidence            47889999999999776  9999999999      89999999999998

>KOG0986|consensus

Probab=95.25  E-value=0.0092  Score=63.38  Aligned_cols=42  Identities=14%  Similarity=0.165  Sum_probs=38.5

Q ss_pred             HHHHHHHhhhhhhcCC--chhHHHhHHH------HHHhhhcCCCCccccc
Q psy4039          61 ARKLFVNSLLNRVTNS--MASDLRRKTI------QQLLYKDNSKPFLAFV  102 (588)
Q Consensus        61 ~~~~~~~~~~~~~~~~--~~~~~~~~~~------~~l~~~~~~~pf~~~~  102 (588)
                      .+.||.+||..|||.-  |++|+|.|||      ++|.+..+.|||.|==
T Consensus       421 c~~LL~Kdp~~RLGcrg~ga~evk~HpfFk~lnw~rleagml~PPfiPdp  470 (591)
T KOG0986|consen  421 CEGLLTKDPEKRLGCRGEGAQEVKEHPFFKDLNWRRLEAGMLEPPFIPDP  470 (591)
T ss_pred             HHHHHccCHHHhccCCCcCcchhhhCcccccCCHhHHhccCCCCCCCCCc
Confidence            7899999999999865  9999999999      8999999999999844

>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes

Probab=95.23  E-value=0.13  Score=53.10  Aligned_cols=32  Identities=38%  Similarity=0.503  Sum_probs=25.1

Q ss_pred             CceeccCCCCcEEEcCCCCCCCCceeeeccccc
Q psy4039         360 RTAHRDLKSDNILLDCSEDNTCPQLVITDFGSS  392 (588)
Q Consensus       360 ~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla  392 (588)
                      +++|+|+.+.|||++.+.... ..+.++||..|
T Consensus       180 ~lcH~Dl~~~Nil~~~~~~~~-~~i~lIDwEya  211 (302)
T cd05156         180 VFCHNDLQEGNILLLNPSSET-KKLVLIDFEYA  211 (302)
T ss_pred             eEEecCCCcCeEEecCCCCCC-CcEEEEeeCCC
Confidence            689999999999998631001 46889999987

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer

>KOG1236|consensus

Probab=95.20  E-value=0.069  Score=56.71  Aligned_cols=60  Identities=10%  Similarity=0.134  Sum_probs=44.3

Q ss_pred             EEEEEecCCC-cHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH-hCCceeccCCCCcEEEcCC
Q psy4039         315 LFILMKKYNT-DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLN-MHRTAHRDLKSDNILLDCS  376 (588)
Q Consensus       315 l~lvme~~~g-sL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yLH-~~~IvHrDLKp~NILld~~  376 (588)
                      ..++-+|..| ++..+++..  ..+++...+++.-.+.|+.-+- -.+.+|.|+.|.||++...
T Consensus       320 ~vl~E~~~~Gl~v~~~v~~~--~~pe~l~kkva~lg~~AllkMl~vDNFvHaDlHPGNVlirf~  381 (565)
T KOG1236|consen  320 LVLVETYERGLSVLRFVKWK--SQPEALVKKVAKLGVNALLKMLIVDNFVHADLHPGNVLIRFN  381 (565)
T ss_pred             ceeeeeccccccHHhhhhcc--cChHHHHHHHHHHHHHHHHHHHHhhcceecccCCCcEEEEec
Confidence            4555556644 888898866  5566677777777777766554 4699999999999999654

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=95.10  E-value=0.016  Score=60.17  Aligned_cols=78  Identities=21%  Similarity=0.234  Sum_probs=57.6

Q ss_pred             HHhHHHHHHHHhhhhhhcCCc--hhHHHhHHH------HHHhhhcCCCCcccccccccccCcccccccccccccchhh--
Q psy4039          57 YFQNARKLFVNSLLNRVTNSM--ASDLRRKTI------QQLLYKDNSKPFLAFVGVSLASGTGILTNRVTNSMASDLR--  126 (588)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~------~~l~~~~~~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  126 (588)
                      +-.-++++|..||.+|.++..  .+++++|+|      .++..+++.||+++..+...  +...+++.++.+++.+.+  
T Consensus       225 ~~~li~~~l~~~P~~R~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  302 (318)
T cd05582         225 AQSLLRALFKRNPANRLGAGPDGVEEIKRHPFFSTIDWNKLYRREIKPPFKPAVGRPD--DTFYFDPEFTSRTPKDSPGI  302 (318)
T ss_pred             HHHHHHHHhhcCHhHcCCCCCCCHHHHhCCCCcCCCCHHHHHhcCCCCCcCCCCCCcc--hhhhcCcccccCccccCCCC
Confidence            456689999999999999885  999999997      67888999999999886555  444566666555544332  


Q ss_pred             --HHhhhhhhcc
Q psy4039         127 --RKTLQQLLYK  136 (588)
Q Consensus       127 --~~~~~~~~~~  136 (588)
                        +++.++++.+
T Consensus       303 ~~s~~~~~~~~~  314 (318)
T cd05582         303 PPSANAHQLFRG  314 (318)
T ss_pred             ccccccccccCC
Confidence              4445555555

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>KOG1093|consensus

Probab=94.36  E-value=0.045  Score=59.55  Aligned_cols=70  Identities=19%  Similarity=0.134  Sum_probs=45.0

Q ss_pred             CcCchhhHHHHHHHHhcCCCCCcccccccccc----ccccC----------CCCCCccHHHHHHHHHhhhhCCCCCCCHH
Q psy4039         435 SKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE----VNALP----------QLNTNVPEVMRRLVAKLLENDPSDRPSAE  500 (588)
Q Consensus       435 ~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~----~~~~~----------~~~~~~~~~l~~Li~~~L~~dP~~Rps~~  500 (588)
                      +|+||||+|.++.|+.-|..-+..........    ....+          .+-..++.-..++..+|+-..|..||...
T Consensus       110 pKsdVwsl~~i~~el~L~~~l~~~~~~s~~l~~i~k~~~~d~~~~~~a~e~~~~~~~d~~~~~~~~~c~~~~~~ir~l~~  189 (725)
T KOG1093|consen  110 PKSDVWSLGFIILELYLGISLEAELTESEYLEILLKYYTDDQELLSTAMEHLIQLLADKKRLPLLKKCLWLEPIIRPLPM  189 (725)
T ss_pred             cchhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhhhHhHHHHhccCCccccccccchh
Confidence            47999999999999998877664421100000    00000          11123455677888899999999999877


Q ss_pred             HHHH
Q psy4039         501 LAAT  504 (588)
Q Consensus       501 e~l~  504 (588)
                      ++.+
T Consensus       190 ~~~k  193 (725)
T KOG1093|consen  190 ELSK  193 (725)
T ss_pred             HHhc
Confidence            7665

>PLN02756 S-methyl-5-thioribose kinase

Probab=94.21  E-value=0.61  Score=50.27  Aligned_cols=29  Identities=17%  Similarity=0.175  Sum_probs=24.7

Q ss_pred             EeeeecccCceeEEEEEECCeeEEEEEEe
Q psy4039         200 IGKFIAKGTNAVVYEATFRGVEYALKMMF  228 (588)
Q Consensus       200 ~~~~IG~G~fG~Vy~a~~~g~~vAVK~i~  228 (588)
                      ..+.||.|....||+....+..|+||.-.
T Consensus        36 ~~~eiggGn~N~VyrV~~~~~svVVKqa~   64 (418)
T PLN02756         36 KIKEVGDGNLNFVYIVVSSSGSFVIKQAL   64 (418)
T ss_pred             eEEEcCCCceeeEEEEEcCCccEEEEeCC
Confidence            36678999999999998877789999864

>COG5072 ALK1 Serine/threonine kinase of the haspin family [Cell division and chromosome partitioning]

Probab=94.21  E-value=0.12  Score=54.18  Aligned_cols=75  Identities=24%  Similarity=0.303  Sum_probs=58.1

Q ss_pred             CceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC-CceeccCCCCcEEEcCCCCCCCCceeeeccc
Q psy4039         312 NMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMH-RTAHRDLKSDNILLDCSEDNTCPQLVITDFG  390 (588)
Q Consensus       312 ~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yLH~~-~IvHrDLKp~NILld~~~~~~~~~vkL~DFG  390 (588)
                      +.++|++|++.++.|...     ..-.++++..++.+.+.-+.-+..+ ..-|||+.-.||||+ +     |++.|+||-
T Consensus       298 ~~y~yl~~kdhgt~is~i-----k~~~~~e~lsff~s~~sil~~lekkf~fehrnlt~~niLId-~-----GnvtLIDfk  366 (488)
T COG5072         298 TLYLYLHFKDHGTPISII-----KADRSEEELSFFWSCISILDILEKKFPFEHRNLTLDNILID-E-----GNVTLIDFK  366 (488)
T ss_pred             ceEEEEEEecCCceeeee-----ecccHHHHHHHHHHHHHHHhhhhhcCCcccccccccceeee-c-----CceEEEEee
Confidence            346889999887665322     1346788889999888777766654 789999999999999 5     799999999


Q ss_pred             cccccCC
Q psy4039         391 SSYTNKS  397 (588)
Q Consensus       391 la~~~~~  397 (588)
                      +||....
T Consensus       367 lsRl~~~  373 (488)
T COG5072         367 LSRLSYS  373 (488)
T ss_pred             eeecccC
Confidence            9996433

>KOG2270|consensus

Probab=94.17  E-value=0.29  Score=51.55  Aligned_cols=75  Identities=23%  Similarity=0.224  Sum_probs=57.8

Q ss_pred             EEEEEecCC--CcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh-CCceeccCCCCcEEEcCCCCCCCCceeeecccc
Q psy4039         315 LFILMKKYN--TDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNM-HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGS  391 (588)
Q Consensus       315 l~lvme~~~--gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yLH~-~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGl  391 (588)
                      -.|||++++  |--.-.|++-  .++...+..+-.|++.-+.-|.. .++||.||.-=|+|+.+      +.+.|+|-+-
T Consensus       239 hVLVM~FlGrdgw~aPkLKd~--~ls~~ka~~~Y~~~v~~MR~lY~~c~LVHADLSEfN~Lyhd------G~lyiIDVSQ  310 (520)
T KOG2270|consen  239 HVLVMEFLGRDGWAAPKLKDA--SLSTSKARELYQQCVRIMRRLYQKCRLVHADLSEFNLLYHD------GKLYIIDVSQ  310 (520)
T ss_pred             ceEeeeeccCCCCcCcccccc--cCChHHHHHHHHHHHHHHHHHHHHhceeccchhhhhheEEC------CEEEEEEccc
Confidence            578999995  3233333333  68888888888899888888865 69999999999999985      5899999987


Q ss_pred             ccccCC
Q psy4039         392 SYTNKS  397 (588)
Q Consensus       392 a~~~~~  397 (588)
                      +...++
T Consensus       311 SVE~DH  316 (520)
T KOG2270|consen  311 SVEHDH  316 (520)
T ss_pred             cccCCC
Confidence            755444

>KOG0614|consensus

Probab=94.07  E-value=0.047  Score=58.94  Aligned_cols=56  Identities=14%  Similarity=0.183  Sum_probs=46.3

Q ss_pred             HhHHHHHHHHhhhhhhcCC--chhHHHhHHH------HHHhhhcCCCCcccccccccccCcccccc
Q psy4039          58 FQNARKLFVNSLLNRVTNS--MASDLRRKTI------QQLLYKDNSKPFLAFVGVSLASGTGILTN  115 (588)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~------~~l~~~~~~~pf~~~~~~~~~~~~~~~~~  115 (588)
                      .+-.|+|-+.||.-|||+.  |+.|||+|..      ..|-.+.+.|||.+-|  ++-||+++||+
T Consensus       649 ~~Lik~LCr~~P~ERLG~~~~gI~DIkkH~Wf~gfdweglr~~~L~pPi~~~v--a~ptD~s~Fd~  712 (732)
T KOG0614|consen  649 TDLIKKLCRDNPTERLGYQKGGINDIKKHRWFEGFDWEGLRSRTLPPPIIPSV--ANPTDVSNFDN  712 (732)
T ss_pred             HHHHHHHHhcCcHhhhccccCChHHHHhhhhhhcCChhhhhhccCCCCccccC--CCcccchhccC
Confidence            3446888899999999955  9999999986      8889999999999987  44457777764

>PLN02421 phosphotransferase, alcohol group as acceptor/kinase

Probab=93.93  E-value=0.57  Score=49.20  Aligned_cols=29  Identities=38%  Similarity=0.492  Sum_probs=24.5

Q ss_pred             CceeccCCCCcEEEcCCCCCCCCceeeeccccc
Q psy4039         360 RTAHRDLKSDNILLDCSEDNTCPQLVITDFGSS  392 (588)
Q Consensus       360 ~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla  392 (588)
                      ..+|.|+-+.|||+++++    +.++++||..|
T Consensus       183 v~CHnDl~~~NiL~~~~~----~~l~lID~EYa  211 (330)
T PLN02421        183 VFAHNDLLSGNLMLNEDE----GKLYFIDFEYG  211 (330)
T ss_pred             EEEECCCCcccEEEeCCC----CcEEEEccccc
Confidence            379999999999997541    57999999987

>KOG0612|consensus

Probab=93.44  E-value=0.061  Score=63.15  Aligned_cols=54  Identities=15%  Similarity=0.161  Sum_probs=40.3

Q ss_pred             hHHHHH---HHHhhhhhhcCCchhHHHhHHHH----HHhhhcCCCCcccccccccccCccccc
Q psy4039          59 QNARKL---FVNSLLNRVTNSMASDLRRKTIQ----QLLYKDNSKPFLAFVGVSLASGTGILT  114 (588)
Q Consensus        59 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~pf~~~~~~~~~~~~~~~~  114 (588)
                      .+++.|   |.-+|..|||-+|++|||+|||.    ==-=|+..|||-|-|  |+.+||++||
T Consensus       310 eeakdLI~~ll~~~e~RLgrngiedik~HpFF~g~~W~~iR~~~pP~vPev--ssd~DTsnFd  370 (1317)
T KOG0612|consen  310 EEAKDLIEALLCDREVRLGRNGIEDIKNHPFFEGIDWDNIRESVPPVVPEV--SSDDDTSNFD  370 (1317)
T ss_pred             HHHHHHHHHHhcChhhhcccccHHHHHhCccccCCChhhhhhcCCCCCCcC--CCCCcccccc
Confidence            344544   44589999999999999999991    111267889999987  6666887774

>COG3173 Predicted aminoglycoside phosphotransferase [General function prediction only]

Probab=92.65  E-value=0.77  Score=47.87  Aligned_cols=31  Identities=16%  Similarity=0.257  Sum_probs=26.0

Q ss_pred             CceeccCCCCcEEEcCCCCCCCCceeeecccccccc
Q psy4039         360 RTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTN  395 (588)
Q Consensus       360 ~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~  395 (588)
                      .++|+|+.+.||+++.+     .-+=+.||+++..-
T Consensus       199 ~lvHGD~~~gNlii~~~-----~~~gVlDwe~~~lG  229 (321)
T COG3173         199 VLVHGDYRPGNLIIDPG-----RPTGVLDWELATLG  229 (321)
T ss_pred             eeeeCCcccCCEEEeCC-----CeeEEEeccccccC
Confidence            58999999999999987     33668999988553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	588
3dfa_A	286	Crystal Structure Of Kinase Domain Of Calcium-depen		8e-12
2wei_A	287	Crystal Structure Of The Kinase Domain Of Cryptospo		9e-12
2jam_A	304	Crystal Structure Of Human Calmodulin-Dependent Pro		1e-11
2y7j_A	365	Structure Of Human Phosphorylase Kinase, Gamma 2 Le		2e-11
3igo_A	486	Crystal Structure Of Cryptosporidium Parvum Cdpk1,		3e-11
4fk3_A	292	B-Raf Kinase V600e Oncogenic Mutant In Complex With		9e-11
3og7_A	289	B-Raf Kinase V600e Oncogenic Mutant In Complex With		9e-11
3c4c_A	280	B-Raf Kinase In Complex With Plx4720 Length = 280		1e-10
3udb_A	317	Crystal Structure Of Snrk2.6 Length = 317		9e-10
3lm0_A	327	Crystal Structure Of Human SerineTHREONINE KINASE 1		1e-09
3uc3_A	361	The Crystal Structure Of Snf1-Related Kinase 2.3 Le		1e-09
1uwj_A	276	The Complex Of Mutant V599e B-raf And Bay439006 Len		2e-09
3idp_A	300	B-Raf V600e Kinase Domain In Complex With An Aminoi		2e-09
4g9r_A	307	B-Raf V600e Kinase Domain Bound To A Type Ii Dihydr		3e-09
3q96_A	282	B-Raf Kinase Domain In Complex With A Tetrahydronap		3e-09
1uwh_A	276	The Complex Of Wild Type B-Raf And Bay439006 Length		3e-09
4h58_A	275	Braf In Complex With Compound 3 Length = 275		3e-09
4dbn_A	284	Crystal Structure Of The Kinase Domain Of Human B-R		3e-09
2fb8_A	281	Structure Of The B-Raf Kinase Domain Bound To Sb-59		3e-09
3ii5_A	306	The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimi		4e-09
3d4q_A	307	Pyrazole-Based Inhibitors Of B-Raf Kinase Length =		4e-09
2jc6_A	334	Crystal Structure Of Human Calmodulin-Dependent Pro		6e-09
3vw6_A	269	Crystal Structure Of Human Apoptosis Signal-Regulat		7e-09
3ujg_A	361	Crystal Structure Of Snrk2.6 In Complex With Hab1 L		8e-09
2clq_A	295	Structure Of Mitogen-Activated Protein Kinase Kinas		9e-09
3uc4_A	362	The Crystal Structure Of Snf1-Related Kinase 2.6 Le		9e-09
3dxn_A	287	Crystal Structure Of The Calcium-dependent Kinase F		9e-09
1yrp_A	278	Catalytic Domain Of Human Zip Kinase Phosphorylated		1e-08
3omv_A	307	Crystal Structure Of C-Raf (Raf-1) Length = 307		1e-08
2r5t_A	373	Crystal Structure Of Inactive Serum And Glucocortic		2e-08
2j90_A	304	Crystal Structure Of Human Zip Kinase In Complex Wi		2e-08
2phk_A	277	The Crystal Structure Of A Phosphorylase Kinase Pep		2e-08
3bhy_A	283	Crystal Structure Of Human Death Associated Protein		2e-08
1phk_A	298	Two Structures Of The Catalytic Domain Of Phosphory		2e-08
2j0l_A	276	Crystal Structure Of A The Active Conformation Of T		3e-08
3hzt_A	467	Crystal Structure Of Toxoplasma Gondii Cdpk3, Tgme4		3e-08
3dak_A	290	Crystal Structure Of Domain-Swapped Osr1 Kinase Dom		4e-08
3nyn_A	576	Crystal Structure Of G Protein-Coupled Receptor Kin		4e-08
4ebw_A	304	Structure Of Focal Adhesion Kinase Catalytic Domain		5e-08
2jkm_A	276	Focal Adhesion Kinase Catalytic Domain In Complex W		5e-08
2j0m_B	276	Crystal Structure A Two-Chain Complex Between The F		5e-08
1mp8_A	281	Crystal Structure Of Focal Adhesion Kinase (Fak) Le		5e-08
2acx_A	576	Crystal Structure Of G Protein Coupled Receptor Kin		6e-08
2vwi_A	303	Structure Of The Osr1 Kinase, A Hypertension Drug T		6e-08
3pxk_A	282	Focal Adhesion Kinase Catalytic Domain In Complex W		6e-08
2vd5_A	412	Structure Of Human Myotonic Dystrophy Protein Kinas		6e-08
4apc_A	350	Crystal Structure Of Human Nima-Related Kinase 1 (N		6e-08
3bz3_A	276	Crystal Structure Analysis Of Focal Adhesion Kinase		6e-08
2etm_A	281	Crystal Structure Of Focal Adhesion Kinase Domain C		7e-08
4fg8_A	315	Crystal Structure Of Human Calcium/calmodulin-depen		7e-08
1a06_A	332	Calmodulin-Dependent Protein Kinase From Rat Length		8e-08
4fg7_A	293	Crystal Structure Of Human Calcium/calmodulin-depen		8e-08
3lij_A	494	Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820)		8e-08
4fg9_A	320	Crystal Structure Of Human Calcium/calmodulin-depen		8e-08
2cn5_A	329	Crystal Structure Of Human Chk2 In Complex With Adp		8e-08
2ycf_A	322	Crystal Structure Of Checkpoint Kinase 2 In Complex		9e-08
1ql6_A	298	The Catalytic Mechanism Of Phosphorylase Kinase Pro		9e-08
2w0j_A	323	Crystal Structure Of Chk2 In Complex With Nsc 10955		9e-08
3i6w_A	443	Structure And Activation Mechanism Of The Chk2 Dna-		9e-08
2xk9_A	322	Structural Analysis Of Checkpoint Kinase 2 (Chk2) I		9e-08
2yfx_A	327	Structure Of L1196m Mutant Anaplastic Lymphoma Kina		9e-08
3zut_A	362	The Structure Of Ost1 (D160a) Kinase Length = 362		9e-08
2yhv_A	342	Structure Of L1196m Mutant Anaplastic Lymphoma Kina		1e-07
2ycr_A	323	Crystal Structure Of Checkpoint Kinase 2 In Complex		1e-07
3i6u_A	419	Structure And Activation Mechanism Of The Chk2 Dna-		1e-07
2jkk_A	276	Focal Adhesion Kinase Catalytic Domain In Complex W		1e-07
3mfr_A	351	Cask-4m Cam Kinase Domain, Native Length = 351		1e-07
2xru_A	280	Aurora-A T288e Complexed With Pha-828300 Length = 2		1e-07
2j0j_A	656	Crystal Structure Of A Fragment Of Focal Adhesion K		2e-07
2v7o_A	336	Crystal Structure Of Human Calcium-Calmodulin-Depen		2e-07
1wmk_A	321	Human Death-Associated Kinase Drp-1, Mutant S308d D		2e-07
2xb7_A	315	Structure Of Human Anaplastic Lymphoma Kinase In Co		2e-07
2a27_A	321	Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal		2e-07
2yjs_A	342	Structure Of C1156y Mutant Anaplastic Lymphoma Kina		2e-07
2xp2_A	327	Structure Of The Human Anaplastic Lymphoma Kinase I		2e-07
3zuu_A	362	The Structure Of Ost1 (D160a, S175d) Kinase In Comp		3e-07
2yjr_A	342	Structure Of F1174l Mutant Anaplastic Lymphoma Kina		3e-07
4fnx_A	327	Crystal Structure Of The Apo R1275q Anaplastic Lymp		3e-07
4fnz_A	327	Crystal Structure Of Human Anaplastic Lymphoma Kina		3e-07
4dce_A	333	Crystal Structure Of Human Anaplastic Lymphoma Kina		3e-07
4fnw_A	327	Crystal Structure Of The Apo F1174l Anaplastic Lymp		3e-07
3aox_A	344	X-Ray Crystal Structure Of Human Anaplastic Lymphom		3e-07
2j0k_A	656	Crystal Structure Of A Fragment Of Focal Adhesion K		3e-07
2ya9_A	361	Crystal Structure Of The Autoinhibited Form Of Mous		4e-07
4gs6_A	315	Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxoz		4e-07
1zws_A	288	Crystal Structure Of The Catalytic Domain Of Human		4e-07
2a2a_A	321	High-resolution Crystallographic Analysis Of The Au		4e-07
4fob_A	353	Crystal Structure Of Human Anaplastic Lymphoma Kina		4e-07
3lau_A	287	Crystal Structure Of Aurora2 Kinase In Complex With		4e-07
3fdn_A	279	Structure-Based Drug Design Of Novel Aurora Kinase		4e-07
2eva_A	307	Structural Basis For The Interaction Of Tak1 Kinase		4e-07
1z9x_A	321	Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal		4e-07
2c6e_A	283	Aurora A Kinase Activated Mutant (T287d) In Complex		4e-07
2c6d_A	275	Aurora A Kinase Activated Mutant (T287d) In Complex		5e-07
2xuu_A	334	Crystal Structure Of A Dap-Kinase 1 Mutant Length =		6e-07
3r21_A	271	Design, Synthesis, And Biological Evaluation Of Pyr		6e-07
3qbn_A	281	Structure Of Human Aurora A In Complex With A Diami		7e-07
3e5a_A	268	Crystal Structure Of Aurora A In Complex With Vx-68		7e-07
3ha6_A	268	Crystal Structure Of Aurora A In Complex With Tpx2		7e-07
2w1c_A	275	Structure Determination Of Aurora Kinase In Complex		7e-07
1mq4_A	272	Crystal Structure Of Aurora-A Protein Kinase Length		7e-07
3lct_A	344	Crystal Structure Of The Anaplastic Lymphoma Kinase		7e-07
3l9p_A	367	Crystal Structure Of The Anaplastic Lymphoma Kinase		8e-07
3h0y_A	268	Aurora A In Complex With A Bisanilinopyrimidine Len		8e-07
2g01_A	370	Pyrazoloquinolones As Novel, Selective Jnk1 Inhibit		8e-07
3o50_A	267	Crystal Structure Of Benzamide 9 Bound To Auroraa L		8e-07
2wqe_A	262	Structure Of S155r Aurora-A Somatic Mutant Length =		8e-07
2wtv_A	285	Aurora-A Inhibitor Structure Length = 285		8e-07
2w1d_A	275	Structure Determination Of Aurora Kinase In Complex		9e-07
1ol5_A	282	Structure Of Aurora-A 122-403, Phosphorylated On Th		9e-07
2j50_A	280	Structure Of Aurora-2 In Complex With Pha-739358 Le		9e-07
3ma6_A	298	Crystal Structure Of Kinase Domain Of Tgcdpk1 In Pr		9e-07
3nrm_A	283	Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibito		9e-07
3gu8_A	295	Crystal Structure Of Dapkl93g With N6-Cyclopentylad		1e-06
2wtw_A	285	Aurora-A Inhibitor Structure (2nd Crystal Form) Len		1e-06
3cok_A	278	Crystal Structure Of Plk4 Kinase Length = 278		1e-06
2x6d_A	285	Aurora-A Bound To An Inhibitor Length = 285		1e-06
2xng_A	283	Structure Of Aurora-A Bound To A Selective Imidazop		1e-06
1u5q_A	348	Crystal Structure Of The Tao2 Kinase Domain: Activa		1e-06
2w4j_A	277	X-Ray Structure Of A Dap-Kinase 2-277 Length = 277		1e-06
2bmc_A	306	Aurora-2 T287d T288d Complexed With Pha-680632 Leng		1e-06
2gcd_A	309	Tao2 Kinase Domain-Staurosporine Structure Length =		1e-06
1wvw_A	278	Crystal Structures Of Kinase Domain Of Dap Kinase I		1e-06
3gu4_A	295	Crystal Structure Of Dapkq23v-Amppnp Length = 295		1e-06
2yak_A	285	Structure Of Death-Associated Protein Kinase 1 (Dap		1e-06
2w4k_A	302	X-Ray Structure Of A Dap-Kinase 2-302 Length = 302		1e-06
1p4f_A	293	Death Associated Protein Kinase Catalytic Domain Wi		1e-06
3dfc_B	295	Crystal Structure Of A Glycine-Rich Loop Mutant Of		1e-06
3f5u_A	295	Crystal Structure Of The Death Associated Protein K		1e-06
3sxr_A	268	Crystal Structure Of Bmx Non-Receptor Tyrosine Kina		1e-06
1muo_A	297	Crystal Structure Of Aurora-2, An Oncogenic Serine-		1e-06
1ig1_A	294	1.8a X-Ray Structure Of Ternary Complex Of A Cataly		1e-06
2j4z_A	306	Structure Of Aurora-2 In Complex With Pha-680626 Le		1e-06
2xzs_A	312	Death Associated Protein Kinase 1 Residues 1-312 Le		2e-06
1luf_A	343	Crystal Structure Of The Musk Tyrosine Kinase: Insi		2e-06
3unz_A	279	Aurora A In Complex With Rpm1679 Length = 279		2e-06
3dls_A	335	Crystal Structure Of Human Pas Kinase Bound To Adp		2e-06
3miy_A	266	X-Ray Crystal Structure Of Itk Complexed With Sunit		2e-06
2vn9_A	301	Crystal Structure Of Human Calcium Calmodulin Depen		2e-06
3v3v_A	379	Structural And Functional Analysis Of Quercetagetin		2e-06
2x0g_A	334	X-ray Structure Of A Dap-kinase Calmodulin Complex		2e-06
2y0a_A	326	Structure Of Dapk1 Construct Residues 1-304 Length		2e-06
3v5j_A	266	Crystal Structure Of Interleukin-2 Inducible T-Cell		2e-06
1fot_A	318	Structure Of The Unliganded Camp-Dependent Protein		2e-06
3qgw_A	286	Crystal Structure Of Itk Kinase Bound To An Inhibit		2e-06
1sm2_A	264	Crystal Structure Of The Phosphorylated Interleukin		2e-06
2wel_A	327	Crystal Structure Of Su6656-Bound CalciumCALMODULIN		3e-06
3coh_A	268	Crystal Structure Of Aurora-A In Complex With A Pen		3e-06
2dwb_A	285	Aurora-A Kinase Complexed With Amppnp Length = 285		3e-06
4hct_A	269	Crystal Structure Of Itk In Complex With Compound 5		3e-06
3dtc_A	271	Crystal Structure Of Mixed-Lineage Kinase Mlk1 Comp		3e-06
3t9t_A	267	Crystal Structure Of Btk Mutant (F435t,K596r) Compl		3e-06
1vzo_A	355	The Structure Of The N-Terminal Kinase Domain Of Ms		4e-06
3o17_A	370	Crystal Structure Of Jnk1-Alpha1 Isoform Length = 3		4e-06
2xne_A	272	Structure Of Aurora-A Bound To An Imidazopyrazine I		4e-06
1jpa_A	312	Crystal Structure Of Unphosphorylated Ephb2 Recepto		4e-06
1ol6_A	282	Structure Of Unphosphorylated D274n Mutant Of Auror		4e-06
3hng_A	360	Crystal Structure Of Vegfr1 In Complex With N-(4-ch		5e-06
3i79_A	484	Calcium-Dependent Protein Kinase 1 From Toxoplasma		6e-06
2iwi_A	312	Crystal Structure Of The Human Pim2 In Complex With		6e-06
3elj_A	369	Jnk1 Complexed With A Bis-Anilino-Pyrrolopyrimidine		6e-06
2xs0_A	386	Linear Binding Motifs For Jnk And For Calcineurin A		6e-06
2ok1_A	365	Crystal Structure Of Jnk3 Bound To N-Benzyl-4-(4-(3		6e-06
1pmn_A	364	Crystal Structure Of Jnk3 In Complex With An Imidaz		6e-06
2b1p_A	355	Inhibitor Complex Of Jnk3 Length = 355		6e-06
4aw5_A	291	Complex Of The Ephb4 Kinase Domain With An Oxindole		7e-06
3ptg_A	363	Design And Synthesis Of A Novel, Orally Efficacious		7e-06
4h36_A	356	Crystal Structure Of Jnk3 In Complex With Atf2 Pept		7e-06
3oxi_A	362	Design And Synthesis Of Disubstituted Thiophene And		7e-06
2o0u_A	364	Crystal Structure Of Human Jnk3 Complexed With N-{3		7e-06
4f1o_A	287	Crystal Structure Of The L1180t Mutant Roco4 Kinase		7e-06
2jed_A	352	The Crystal Structure Of The Kinase Domain Of The P		7e-06
3pze_A	358	Jnk1 In Complex With Inhibitor Length = 358		7e-06
2exc_X	356	Inhibitor Complex Of Jnk3 Length = 356		7e-06
1jnk_A	423	The C-Jun N-Terminal Kinase (Jnk3s) Complexed With		8e-06
2wqm_A	310	Structure Of Apo Human Nek7 Length = 310		8e-06
4f0f_A	287	Crystal Structure Of The Roco4 Kinase Domain Bound		9e-06
4as0_A	273	Cyclometalated Phthalimides As Protein Kinase Inhib		9e-06
3q5i_A	504	Crystal Structure Of Pbanka_031420 Length = 504		9e-06
3ku2_A	507	Crystal Structure Of Inactivated Form Of Cdpk1 From		9e-06
3ttj_A	464	Crystal Structure Of Jnk3 Complexed With Cc-359, A		1e-05
2qon_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		1e-05
3hx4_A	508	Crystal Structure Of Cdpk1 Of Toxoplasma Gondii, Tg		1e-05
3cxw_A	314	Crystal Structure Of Human Proto-Oncogene Serine Th		1e-05
2j2i_B	312	Crystal Structure Of The Humab Pim1 In Complex With		1e-05
2x4f_A	373	The Crystal Structure Of The Human Myosin Light Cha		1e-05
1yxs_A	293	Crystal Structure Of Kinase Pim1 With P123m Mutatio		1e-05
3tac_A	361	Crystal Structure Of The Liprin-AlphaCASK COMPLEX L		1e-05
3c4e_A	273	Pim-1 Kinase Domain In Complex With 3-Aminophenyl-7		1e-05
3uto_A	573	Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-		1e-05
2zv2_A	298	Crystal Structure Of Human CalciumCALMODULIN-Depend		1e-05
2bil_B	313	The Human Protein Kinase Pim1 In Complex With Its C		1e-05
3jpv_A	313	Crystal Structure Of Human Proto-Oncogene Serine Th		1e-05
3p23_A	432	Crystal Structure Of The Human Kinase And Rnase Dom		1e-05
4alv_A	328	Benzofuropyrimidinone Inhibitors Of Pim-1 Length =		1e-05
3r00_A	299	The Discovery Of Novel Benzofuran-2-Carboxylic Acid		1e-05
4dtk_A	276	Novel And Selective Pan-Pim Kinase Inhibitor Length		1e-05
2y94_A	476	Structure Of An Active Form Of Mammalian Ampk Lengt		1e-05
1xws_A	313	Crystal Structure Of The Human Pim1 Kinase Domain L		1e-05
1yhs_A	273	Crystal Structure Of Pim-1 Bound To Staurosporine L		1e-05
3qc9_A	543	Crystal Structure Of Cross-Linked Bovine Grk1 T8cN4		1e-05
2xj0_A	301	Protein Kinase Pim-1 In Complex With Fragment-4 Fro		1e-05
3a99_A	320	Structure Of Pim-1 Kinase Crystallized In The Prese		1e-05
1ukh_A	369	Structural Basis For The Selective Inhibition Of Jn		1e-05
3uix_A	298	Crystal Structure Of Pim1 Kinase In Complex With Sm		1e-05
4alu_A	328	Benzofuropyrimidinone Inhibitors Of Pim-1 Length =		1e-05
1xqz_A	300	Crystal Structure Of Hpim-1 Kinase At 2.1 A Resolut		1e-05
4fr4_A	384	Crystal Structure Of Human SerineTHREONINE-Protein		1e-05
3jxw_A	294	Discovery Of 3h-Benzo[4,5]thieno[3,2-D]pyrimidin-4-		1e-05
2xrw_A	371	Linear Binding Motifs For Jnk And For Calcineurin A		1e-05
3dzq_A	361	Human Epha3 Kinase Domain In Complex With Inhibitor		1e-05
3c0g_A	351	Cask Cam-kinase Domain- 3'-amp Complex, P1 Form Len		1e-05
3com_A	314	Crystal Structure Of Mst1 Kinase Length = 314		1e-05
3t8o_A	543	Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolu		1e-05
1ywv_A	293	Crystal Structures Of Proto-Oncogene Kinase Pim1: A		2e-05
3c4w_A	543	Crystal Structure Of G Protein Coupled Receptor Kin		2e-05
4a7c_A	308	Crystal Structure Of Pim1 Kinase With Etp46546 Leng		2e-05
3fxx_A	371	Human Epha3 Kinase And Juxtamembrane Region Bound T		2e-05
2vz6_A	313	Structure Of Human Calcium Calmodulin Dependent Pro		2e-05
3c4x_A	543	Crystal Structure Of G Protein Coupled Receptor Kin		2e-05
1koa_A	491	Twitchin Kinase Fragment (C.Elegans), Autoregulated		2e-05
3kvx_A	364	Jnk3 Bound To Aminopyrimidine Inhibitor, Sr-3562 Le		2e-05
2qoi_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		2e-05
2qof_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f		2e-05
2qod_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y602f		2e-05
2qob_A	344	Human Epha3 Kinase Domain, Base Structure Length =		2e-05
2yac_A	311	Crystal Structure Of Polo-Like Kinase 1 In Complex		2e-05
3ll6_A	337	Crystal Structure Of The Human Cyclin G Associated		2e-05
2qoc_A	344	Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp		2e-05
2qo7_A	373	Human Epha3 Kinase And Juxtamembrane Region, Dephos		2e-05
2gsf_A	373	The Human Epha3 Receptor Tyrosine Kinase And Juxtam		2e-05
2bik_B	313	Human Pim1 Phosphorylated On Ser261 Length = 313		2e-05
2rku_A	294	Structure Of Plk1 In Complex With Bi2536 Length = 2		2e-05
3kb7_A	311	Crystal Structure Of Polo-Like Kinase 1 In Complex		2e-05
2qoo_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		2e-05
2r9s_A	356	C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Qu		2e-05
3ma3_A	313	Crystal Structure Of Human Proto-Oncogene Serine Th		2e-05
3dcv_A	328	Crystal Structure Of Human Pim1 Kinase Complexed Wi		2e-05
3fi3_A	364	Crystal Structure Of Jnk3 With Indazole Inhibitor,		2e-05
3cy3_A	314	Crystal Structure Of Human Proto-Oncogene Serine Th		2e-05
2v5q_A	315	Crystal Structure Of Wild-type Plk-1 Kinase Domain		2e-05
2obj_A	333	Crystal Structure Of Human Pim-1 Kinase In Complex		2e-05
3mtl_A	324	Crystal Structure Of The Pctaire1 Kinase In Complex		2e-05
3thb_A	333	Structure Of Plk1 Kinase Domain In Complex With A B		2e-05
2ou7_A	335	Structure Of The Catalytic Domain Of Human Polo-Lik		2e-05
3is5_A	285	Crystal Structure Of Cdpk Kinase Domain From Toxopl		2e-05
3fi2_A	353	Crystal Structure Of Jnk3 With Amino-Pyrazole Inhib		2e-05
2xiy_A	301	Protein Kinase Pim-1 In Complex With Fragment-2 Fro		2e-05
3f2a_A	300	Crystal Structure Of Human Pim-1 In Complex With Da		2e-05
3gbz_A	329	Structure Of The Cmgc Cdk Kinase From Giardia Lambl		2e-05
3vud_A	370	Crystal Structure Of A Cysteine-deficient Mutant M1		3e-05
2qnj_A	328	Kinase And Ubiquitin-Associated Domains Of Mark3PAR		3e-05
2qok_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		3e-05
1xjd_A	345	Crystal Structure Of Pkc-Theta Complexed With Staur		3e-05
1mqb_A	333	Crystal Structure Of Ephrin A2 (Epha2) Receptor Pro		3e-05
3fe3_A	328	Crystal Structure Of The Kinase Mark3PAR-1: T211a-S		3e-05
3fv8_A	355	Jnk3 Bound To Piperazine Amide Inhibitor, Sr2774 Le		3e-05
2h6d_A	276	Protein Kinase Domain Of The Human 5'-Amp-Activated		4e-05
3vug_A	370	Crystal Structure Of A Cysteine-deficient Mutant M2		4e-05
2qkr_A	313	Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5		4e-05
3mn3_A	271	An Inhibited Conformation For The Protein Kinase Do		4e-05
4g3f_A	336	Crystal Structure Of Murine Nf-kappab Inducing Kina		4e-05
3niz_A	311	Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5		4e-05
3kul_A	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		4e-05
4g3c_A	352	Crystal Structure Of Apo Murine Nf-kappab Inducing		4e-05
2gph_A	364	Docking Motif Interactions In The Map Kinase Erk2 L		4e-05
2qol_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596:y		4e-05
4g3g_A	350	Crystal Structure Of Murine Nf-kappab Inducing Kina		4e-05
2fh9_A	274	Structure And Dimerization Of The Kinase Domain Fro		4e-05
2hen_A	286	Crystal Structure Of The Ephb2 Receptor Kinase Doma		4e-05
3hyh_A	275	Crystal Structure Of The Protein Kinase Domain Of Y		5e-05
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		5e-05
3i7c_A	484	Calcium-Dependent Protein Kinase 1 From Toxoplasma		5e-05
3dae_A	283	Crystal Structure Of Phosphorylated Snf1 Kinase Dom		5e-05
2yza_A	276	Crystal Structure Of Kinase Domain Of Human 5'-Amp-		5e-05
4f1m_A	287	Crystal Structure Of The G1179s Roco4 Kinase Domain		5e-05
4b99_A	398	Crystal Structure Of Mapk7 (Erk5) With Inhibitor Le		6e-05
3bkb_A	377	Crystal Structure Of Human Feline Sarcoma Viral Onc		6e-05
2rio_A	434	Structure Of The Dual Enzyme Ire1 Reveals The Basis		6e-05
4ic7_A	442	Crystal Structure Of The Erk5 Kinase Domain In Comp		6e-05
2xik_A	294	Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related K		6e-05
3d5v_A	317	Crystal Structure Of An Activated (Thr->asp) Polo-L		7e-05
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		7e-05
3kul_B	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		7e-05
3db6_A	301	Crystal Structure Of An Activated (Thr->asp) Polo-L		7e-05
2xix_A	301	Protein Kinase Pim-1 In Complex With Fragment-1 Fro		7e-05
4af3_A	292	Human Aurora B Kinase In Complex With Incenp And Vx		7e-05
3ggf_A	301	Crystal Structure Of Human SerineTHREONINE-Protein		8e-05
3soa_A	444	Full-Length Human Camkii Length = 444		8e-05
2c30_A	321	Crystal Structure Of The Human P21-Activated Kinase		8e-05
1yvj_A	290	Crystal Structure Of The Jak3 Kinase Domain In Comp		9e-05
3nup_A	307	Cdk6 (Monomeric) In Complex With Inhibitor Length =		9e-05
2vwu_A	302	Ephb4 Kinase Domain Inhibitor Complex Length = 302		9e-05
3cd3_A	377	Crystal Structure Of Phosphorylated Human Feline Sa		9e-05
2psq_A	370	Crystal Structure Of Unphosphorylated Unactivated W		9e-05
1gzn_A	335	Structure Of Pkb Kinase Domain Length = 335		1e-04
3e87_A	335	Crystal Structures Of The Kinase Domain Of Akt2 In		1e-04
3d5w_A	317	Crystal Structure Of A Phosphorylated Polo-Like Kin		1e-04
1o6k_A	336	Structure Of Activated Form Of Pkb Kinase Domain S4		1e-04
3ckw_A	304	Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3		1e-04
1gzk_A	315	Molecular Mechanism For The Regulation Of Protein K		1e-04
1mrv_A	339	Crystal Structure Of An Inactive Akt2 Kinase Domain		1e-04
3d5u_A	317	Crystal Structure Of A Wildtype Polo-Like Kinase 1		1e-04
3ckx_A	304	Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3		1e-04
3zhp_C	294	Human Mst3 (stk24) In Complex With Mo25beta Length		1e-04
3a7f_A	303	Human Mst3 Kinase Length = 303		1e-04
3pjc_A	315	Crystal Structure Of Jak3 Complexed With A Potent A		1e-04
3c4f_A	302	Fgfr Tyrosine Kinase Domain In Complex With 3-(3- M		1e-04
1o6l_A	337	Crystal Structure Of An Activated Akt/protein Kinas		1e-04
3lxk_A	327	Structural And Thermodynamic Characterization Of Th		1e-04
2biy_A	310	Structure Of Pdk1-S241a Mutant Kinase Domain Length		1e-04
1jow_B	308	Crystal Structure Of A Complex Of Human Cdk6 And A		1e-04
3h4j_B	336	Crystal Structure Of Pombe Ampk Kdaid Fragment Leng		1e-04
2j7t_A	302	Crystal Structure Of Human Serine Threonine Kinase-		1e-04
4hvd_A	314	Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h		1e-04
3nus_A	286	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fra		1e-04
3pls_A	298	Ron In Complex With Ligand Amp-Pnp Length = 298		1e-04
3nax_A	311	Pdk1 In Complex With Inhibitor Mp7 Length = 311		1e-04
3cly_A	334	Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase		1e-04
3b2t_A	311	Structure Of Phosphotransferase Length = 311		1e-04
4bc6_A	293	Crystal Structure Of Human Serine Threonine Kinase-		1e-04
1z5m_A	286	Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrr		1e-04
3gc8_A	370	The Structure Of P38beta C162s In Complex With A Di		1e-04
2jdo_A	342	Structure Of Pkb-Beta (Akt2) Complexed With Isoquin		1e-04
3nay_A	311	Pdk1 In Complex With Inhibitor Mp6 Length = 311		1e-04
3ri1_A	313	Crystal Structure Of The Catalytic Domain Of Fgfr2		1e-04
3gp0_A	348	Crystal Structure Of Human Mitogen Activated Protei		1e-04
3gql_A	326	Crystal Structure Of Activated Receptor Tyrosine Ki		1e-04
1bi8_A	326	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		1e-04
3nun_A	292	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lea		1e-04
2pvf_A	334	Crystal Structure Of Tyrosine Phosphorylated Activa		1e-04
3vul_A	370	Crystal Structure Of A Cysteine-deficient Mutant M1		1e-04
3vum_A	370	Crystal Structure Of A Cysteine-deficient Mutant M7		1e-04
1gjo_A	316	The Fgfr2 Tyrosine Kinase Domain Length = 316		1e-04
2pzp_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		1e-04
3rvg_A	303	Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido		1e-04
3qfv_A	415	Mrck Beta In Complex With Tpca-1 Length = 415		1e-04
2hel_A	306	Crystal Structure Of A Mutant Epha4 Kinase Domain (		1e-04
1uu9_A	286	Structure Of Human Pdk1 Kinase Domain In Complex Wi		2e-04
3lpb_A	295	Crystal Structure Of Jak2 Complexed With A Potent 2		2e-04
1h1w_A	289	High Resolution Crystal Structure Of The Human Pdk1		2e-04
3q32_A	301	Structure Of Janus Kinase 2 With A Pyrrolotriazine		2e-04
3e62_A	293	Fragment Based Discovery Of Jak-2 Inhibitors Length		2e-04
2b7a_A	293	The Structural Basis Of Janus Kinase 2 Inhibition B		2e-04
3ocb_A	341	Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor		2e-04
3tku_A	433	Mrck Beta In Complex With Fasudil Length = 433		2e-04
4e4m_A	302	Jak2 Kinase (Jh1 Domain) In Complex With Compound 3		2e-04
3hrc_A	311	Crystal Structure Of A Mutant Of Human Pdk1 Kinase		2e-04
2xa4_A	298	Inhibitors Of Jak2 Kinase Domain Length = 298		2e-04
3lxn_A	318	Structural And Thermodynamic Characterization Of Th		2e-04
2wd1_A	292	Human C-Met Kinase In Complex With Azaindole Inhibi		2e-04
3vuk_A	370	Crystal Structure Of A Cysteine-deficient Mutant M5		2e-04
2pzr_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		2e-04
2w1i_A	326	Structure Determination Of Aurora Kinase In Complex		2e-04
4gv1_A	340	Pkb Alpha In Complex With Azd5363 Length = 340		2e-04
3vuh_A	370	Crystal Structure Of A Cysteine-deficient Mutant M3		2e-04
3tjc_A	298	Co-Crystal Structure Of Jak2 With Thienopyridine 8		2e-04
3jy9_A	311	Janus Kinase 2 Inhibitors Length = 311		2e-04
4aqc_A	301	Triazolopyridine-Based Inhibitor Of Janus Kinase 2		2e-04
3io7_A	313	2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Sel		2e-04
3vui_A	370	Crystal Structure Of A Cysteine-deficient Mutant M2		2e-04
4hge_A	300	Jak2 Kinase (Jh1 Domain) In Complex With Compound 8		2e-04
3orx_A	316	Pdk1 Mutant Bound To Allosteric Disulfide Fragment		2e-04
4g3d_A	371	Crystal Structure Of Human Nf-kappab Inducing Kinas		2e-04
3cqu_A	342	Crystal Structure Of Akt-1 Complexed With Substrate		2e-04
2xch_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		2e-04
3kl8_A	269	Camkiintide Inhibitor Complex Length = 269		2e-04
3uiu_A	306	Crystal Structure Of Apo-Pkr Kinase Domain Length =		2e-04
3lj0_A	434	Ire1 Complexed With Adp And Quercetin Length = 434		2e-04
4dn5_A	356	Crystal Structure Of Nf-kb-inducing Kinase (nik) Le		2e-04
3sc1_A	311	Novel Isoquinolone Pdk1 Inhibitors Discovered Throu		2e-04
3i5n_A	309	Crystal Structure Of C-Met With Triazolopyridazine		2e-04
4gg5_A	319	Crystal Structure Of Cmet In Complex With Novel Inh		2e-04
4e6d_A	298	Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex W		2e-04
2rfn_A	310	X-ray Structure Of C-met With Inhibitor. Length = 3		2e-04
2wgj_A	306	X-Ray Structure Of Pf-02341066 Bound To The Kinase		2e-04
2xck_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		2e-04
1kob_A	387	Twitchin Kinase Fragment (Aplysia), Autoregulated P		2e-04
2r7b_A	312	Crystal Structure Of The Phosphoinositide-Dependent		2e-04
1uu3_A	310	Structure Of Human Pdk1 Kinase Domain In Complex Wi		2e-04
4a07_A	311	Human Pdk1 Kinase Domain In Complex With Allosteric		2e-04
3rwp_A	311	Discovery Of A Novel, Potent And Selective Inhibito		2e-04
3h9o_A	311	Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1)		2e-04
3f66_A	298	Human C-Met Kinase In Complex With Quinoxaline Inhi		2e-04
3bhh_A	295	Crystal Structure Of Human Calcium/calmodulin-depen		2e-04
2pvy_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		2e-04
1fgk_A	310	Crystal Structure Of The Tyrosine Kinase Domain Of		2e-04
3rhx_B	306	Crystal Structure Of The Catalytic Domain Of Fgfr1		2e-04
3lq8_A	302	Structure Of The Kinase Domain Of C-Met Bound To Xl		2e-04
4f63_A	309	Crystal Structure Of Human Fibroblast Growth Factor		2e-04
3q6u_A	308	Structure Of The Apo Met Receptor Kinase In The Dua		2e-04
3iop_A	312	Pdk-1 In Complex With The Inhibitor Compound-8i Len		2e-04
2xyu_A	285	Crystal Structure Of Epha4 Kinase Domain In Complex		2e-04
3js2_A	317	Crystal Structure Of Minimal Kinase Domain Of Fibro		2e-04
2q0b_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		2e-04
2pz5_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		2e-04
2hwo_A	286	Crystal Structure Of Src Kinase Domain In Complex W		2e-04
2qq7_A	286	Crystal Structure Of Drug Resistant Src Kinase Doma		2e-04
4eqm_A	294	Structural Analysis Of Staphylococcus Aureus Serine		2e-04
4aw2_A	437	Crystal Structure Of Cdc42 Binding Protein Kinase A		2e-04
3dkg_A	317	Sgx Clone 5698a109kfg1h1 Length = 317		2e-04
3kxx_A	317	Structure Of The Mutant Fibroblast Growth Factor Re		2e-04
3kk8_A	284	Camkii Substrate Complex A Length = 284		2e-04
2g15_A	318	Structural Characterization Of Autoinhibited C-Met		2e-04
2y6m_A	291	Crystal Structure Of Epha4 Kinase Domain Length = 2		3e-04
2py3_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		3e-04
3tt0_A	382	Co-Structure Of Fibroblast Growth Factor Receptor 1		3e-04
3kk9_A	282	Camkii Substrate Complex B Length = 282		3e-04
2pwl_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		3e-04
1zyc_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		3e-04
3fhr_A	336	High Resolution Crystal Structure Of Mitogen-Activa		3e-04
2hk5_A	270	Hck Kinase In Complex With Lck Targetted Inhibitor		3e-04
3u4w_A	275	Src In Complex With Dna-Templated Macrocyclic Inhib		3e-04
3iw4_A	360	Crystal Structure Of Pkc Alpha In Complex With Nvp-		3e-04
4ejn_A	446	Crystal Structure Of Autoinhibited Form Of Akt1 In		3e-04
1zy4_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		3e-04
3pwy_A	311	Crystal Structure Of An Extender (Spd28345)-Modifie		3e-04
3d7u_B	277	Structural Basis For The Recognition Of C-Src By It		3e-04
2x7f_A	326	Crystal Structure Of The Kinase Domain Of Human Tra		3e-04
1k3a_A	299	Structure Of The Insulin-Like Growth Factor 1 Recep		3e-04
3svv_A	286	Crystal Structure Of T338c C-Src Covalently Bound T		3e-04
2zm3_A	308	Complex Structure Of Insulin-Like Growth Factor Rec		3e-04
3o96_A	446	Crystal Structure Of Human Akt1 With An Allosteric		3e-04
2bdw_A	362	Crystal Structure Of The Auto-Inhibited Kinase Doma		3e-04
3g6h_A	286	Src Thr338ile Inhibited In The Dfg-Asp-Out Conforma		3e-04
3oez_A	286	Crystal Structure Of The L317i Mutant Of The Chicke		3e-04
2oiq_A	286	Crystal Structure Of Chicken C-Src Kinase Domain In		3e-04
2zoq_A	382	Structural Dissection Of Human Mitogen-Activated Ki		3e-04
3e7o_A	360	Crystal Structure Of Jnk2 Length = 360		4e-04
2og8_A	265	Crystal Structure Of Aminoquinazoline 36 Bound To L		4e-04
3r1n_A	317	Mk3 Kinase Bound To Compound 5b Length = 317		4e-04
3kn5_A	325	Crystal Structure Of The C-Terminal Kinase Domain O		4e-04
1qcf_A	454	Crystal Structure Of Hck In Complex With A Src Fami		4e-04
2of2_A	271	Crystal Structure Of Furanopyrimidine 8 Bound To Lc		4e-04
3bys_A	277	Co-Crystal Structure Of Lck And Aminopyrimidine Ami		4e-04
3zgw_A	347	Crystal Structure Of Maternal Embryonic Leucine Zip		4e-04
3ugc_A	295	Structural Basis Of Jak2 Inhibition By The Type Ii		4e-04
2ofv_A	277	Crystal Structure Of Aminoquinazoline 1 Bound To Lc		5e-04
1jqh_A	308	Igf-1 Receptor Kinase Domain Length = 308		5e-04
3gqi_A	326	Crystal Structure Of Activated Receptor Tyrosine Ki		5e-04
3qa8_A	676	Crystal Structure Of Inhibitor Of Kappa B Kinase Be		5e-04
3nz0_A	302	Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 3		5e-04
3d14_A	272	Crystal Structure Of Mouse Aurora A (Asn186->gly, L		5e-04
2ptk_A	453	Chicken Src Tyrosine Kinase Length = 453		5e-04
3rzf_A	677	Crystal Structure Of Inhibitor Of Kappab Kinase Bet		5e-04
2oj9_A	307	Structure Of Igf-1r Kinase Domain Complexed With A		5e-04
2buj_A	317	Crystal Structure Of The Human Serine-Threonine Kin		5e-04
3qqu_A	301	Cocrystal Structure Of Unphosphorylated Igf With Py		5e-04
2pl0_A	289	Lck Bound To Imatinib Length = 289		5e-04
3lvp_A	336	Crystal Structure Of Bisphosphorylated Igf1-R Kinas		5e-04
4h3q_A	362	Crystal Structure Of Human Erk2 Complexed With A Ma		5e-04
3o23_A	305	Human Unphosphorylated Igf1-R Kinase Domain In Comp		5e-04
4fux_A	360	Crystal Structure Of The Erk2 Complexed With E75 Le		5e-04
3qyw_A	364	Crystal Structure Of Erk2 In Complex With An Inhibi		6e-04
4gsb_A	364	Monoclinic Crystal Form Of The Apo-Erk2 Length = 36		6e-04
4fv7_A	360	Crystal Structure Of The Erk2 Complexed With E94 Le		6e-04
3nyx_A	302	Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-T		6e-04
4fv6_A	360	Crystal Structure Of The Erk2 Complexed With E57 Le		6e-04
4e20_A	290	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		6e-04
2v55_A	406	Mechanism Of Multi-site Phosphorylation From A Rock		6e-04
4e1z_A	291	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		6e-04
3zuv_A	364	Crystal Structure Of A Designed Selected Ankyrin Re		6e-04
2erk_A	365	Phosphorylated Map Kinase Erk2 Length = 365		6e-04
3v8s_A	410	Human Rho-Associated Protein Kinase 1 (Rock 1) In C		6e-04
2rei_A	318	Kinase Domain Of Human Ephrin Type-a Receptor 7 (ep		6e-04
1i44_A	306	Crystallographic Studies Of An Activation Loop Muta		6e-04
3i81_A	315	Crystal Structure Of Insulin-Like Growth Factor 1 R		6e-04
3tei_A	362	Crystal Structure Of Human Erk2 Complexed With A Ma		6e-04
2y9q_A	362	Crystal Structure Of Human Erk2 Complexed With A Ma		6e-04
2ojg_A	380	Crystal Structure Of Erk2 In Complex With N,n-dimet		6e-04
3o71_A	358	Crystal Structure Of Erk2DCC PEPTIDE COMPLEX Length		6e-04
3zu7_A	365	Crystal Structure Of A Designed Selected Ankyrin Re		6e-04
2z7l_A	366	Unphosphorylated Mitogen Activated Protein Kinase E		6e-04
3c9w_A	357	Crystal Structure Of Erk-2 With Hypothemycin Covale		6e-04
2fys_B	364	Crystal Structure Of Erk2 Complex With Kim Peptide		6e-04
1gol_A	364	Coordinates Of Rat Map Kinase Erk2 With An Arginine		7e-04
2esm_A	415	Crystal Structure Of Rock 1 Bound To Fasudil Length		7e-04
3sa0_A	360	Complex Of Erk2 With Norathyriol Length = 360		7e-04
1wzy_A	368	Crystal Structure Of Human Erk2 Complexed With A Py		7e-04
1tvo_A	368	The Structure Of Erk2 In Complex With A Small Molec		7e-04
3r63_A	358	Structure Of Erk2 (Spe) Mutant (S246e) Length = 358		7e-04
1m7n_A	322	Crystal Structure Of Unactivated Apo Insulin-Like G		7e-04
4gt4_A	308	Structure Of Unliganded, Inactive Ror2 Kinase Domai		7e-04
3qc4_A	314	Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length =		7e-04
3q6w_A	307	Structure Of Dually-phosphorylated Met Receptor Kin		7e-04
4dym_A	301	Crystal Structure Of The Acvr1 Kinase Domain In Com		8e-04
3qti_A	314	C-Met Kinase In Complex With Nvp-Bvu972 Length = 31		8e-04
3geq_A	286	Structural Basis For The Chemical Rescue Of Src Kin		8e-04
3lw0_A	304	Igf-1rk In Complex With Ligand Msc1609119a-1 Length		8e-04
2puu_A	348	Crystal Structure Of P38 Complex With 1-(5-Tert-But		8e-04
3zzw_A	289	Crystal Structure Of The Kinase Domain Of Ror2 Leng		8e-04
2r2p_A	295	Kinase Domain Of Human Ephrin Type-A Receptor 5 (Ep		8e-04
3a4p_A	319	Human C-Met Kinase Domain Complexed With 6-Benzylox		8e-04
3daj_A	272	Crystal Structure Of Aurora A Complexed With An Inh		8e-04
3mtf_A	301	Crystal Structure Of The Acvr1 Kinase In Complex Wi		9e-04
3dqw_A	286	C-Src Kinase Domain Thr338ile Mutant In Complex Wit		9e-04

>pdb|3DFA|A Chain A, Crystal Structure Of Kinase Domain Of Calcium-dependent Protein Kinase Cgd3_920 From Cryptosporidium Parvum Length = 286

Iteration: 1
 Score = 68.9 bits (167), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 82/188 (43%), Gaps = 29/188 (15%)
Query: 336 QLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTN 395
           + S H+   +  Q+  G+T+++ H   HRDLK +NILL+  E +    + I DFG S   
Sbjct: 117 RFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDC--DIKIIDFGLSTCF 174
Query: 396 KSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNP 455
           +    M+      +  G    +APEV   T          K D W+AG + Y +     P
Sbjct: 175 QQNTKMK------DRIGTAYYIAPEVLRGTYD-------EKCDVWSAGVILYILLSGTPP 221
Query: 456 FY--------QSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQ 507
           FY        +      Y  + LPQ  T + +  + L+ K+L   PS R    + AT C 
Sbjct: 222 FYGKNEYDILKRVETGKYAFD-LPQWRT-ISDDAKDLIRKMLTFHPSLR----ITATQCL 275
Query: 508 LYLWAPKH 515
            + W  K+
Sbjct: 276 EHPWIQKY 283

>pdb|2WEI|A Chain A, Crystal Structure Of The Kinase Domain Of Cryptosporidium Parvum Calcium Dependent Protein Kinase In Complex With 3- Mb-Pp1 Length = 287

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 82/188 (43%), Gaps = 29/188 (15%)
Query: 336 QLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTN 395
           + S H+   +  Q+  G+T+++ H   HRDLK +NILL+  E +    + I DFG S   
Sbjct: 117 RFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDC--DIKIIDFGLSTCF 174
Query: 396 KSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNP 455
           +    M+      +  G    +APEV   T          K D W+AG + Y +     P
Sbjct: 175 QQNTKMK------DRIGTAYYIAPEVLRGTYD-------EKCDVWSAGVILYILLSGTPP 221
Query: 456 FY--------QSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQ 507
           FY        +      Y  + LPQ  T + +  + L+ K+L   PS R    + AT C 
Sbjct: 222 FYGKNEYDILKRVETGKYAFD-LPQWRT-ISDDAKDLIRKMLTFHPSLR----ITATQCL 275
Query: 508 LYLWAPKH 515
            + W  K+
Sbjct: 276 EHPWIQKY 283

>pdb|2JAM|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein Kinase I G Length = 304

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 90/191 (47%), Gaps = 32/191 (16%)
Query: 344 LLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQY 403
           L+  Q+L  V +L+ +   HRDLK +N+L    E+N+  +++ITDFG S   ++G+    
Sbjct: 110 LVIQQVLSAVKYLHENGIVHRDLKPENLLYLTPEENS--KIMITDFGLSKMEQNGI---M 164
Query: 404 SSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARN 462
           S+A     G    +APEV    P       YSK+ D W+ G + Y +     PFY+   +
Sbjct: 165 STA----CGTPGYVAPEVLAQKP-------YSKAVDCWSIGVITYILLCGYPPFYEETES 213
Query: 463 TDYE--VNALPQLNT----NVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHW 516
             +E       +  +    ++ E  +  +  LLE DP++R + E A +           W
Sbjct: 214 KLFEKIKEGYYEFESPFWDDISESAKDFICHLLEKDPNERYTCEKALS---------HPW 264
Query: 517 LYGATPSHNEI 527
           + G T  H +I
Sbjct: 265 IDGNTALHRDI 275

>pdb|2Y7J|A Chain A, Structure Of Human Phosphorylase Kinase, Gamma 2 Length = 365

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 95/200 (47%), Gaps = 32/200 (16%)
Query: 315 LFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLD 374
           +F LM+K   +L +YL E+ A LS  E   +   LLE V+ L+ +   HRDLK +NILLD
Sbjct: 178 VFDLMRK--GELFDYLTEKVA-LSEKETRSIMRSLLEAVSFLHANNIVHRDLKPENILLD 234
Query: 375 CSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALAT-----PGLF 429
              DN   Q+ ++DFG S   + G  ++      EL G    +APE+   +     PG  
Sbjct: 235 ---DNM--QIRLSDFGFSCHLEPGEKLR------ELCGTPGYLAPEILKCSMDETHPG-- 281
Query: 430 SFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPE------VMR 482
               Y K  D W  G + + +     PF+   +     +    Q   + PE       ++
Sbjct: 282 ----YGKEVDLWACGVILFTLLAGSPPFWHRRQILMLRMIMEGQYQFSSPEWDDRSSTVK 337
Query: 483 RLVAKLLENDPSDRPSAELA 502
            L+++LL+ DP  R +AE A
Sbjct: 338 DLISRLLQVDPEARLTAEQA 357

>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1, Cgd3_920 Length = 486

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 83/188 (44%), Gaps = 29/188 (15%)
Query: 336 QLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTN 395
           + S H+   +  Q+  G+T+++ H   HRDLK +NILL+  E + C  + I DFG S   
Sbjct: 117 RFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKD-C-DIKIIDFGLSTCF 174
Query: 396 KSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNP 455
           +    M+      +  G    +APEV   T          K D W+AG + Y +     P
Sbjct: 175 QQNTKMK------DRIGTAYYIAPEVLRGTYD-------EKCDVWSAGVILYILLSGTPP 221
Query: 456 FY--------QSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQ 507
           FY        +      Y  + LPQ  T + +  + L+ K+L    +  PS  + AT C 
Sbjct: 222 FYGKNEYDILKRVETGKYAFD-LPQWRT-ISDDAKDLIRKML----TFHPSLRITATQCL 275
Query: 508 LYLWAPKH 515
            + W  K+
Sbjct: 276 EHPWIQKY 283

>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx3203 Length = 292

Iteration: 1
 Score = 65.5 bits (158), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 90/186 (48%), Gaps = 23/186 (12%)
Query: 323 NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 382
            + L ++L     +  M + + +  Q   G+ +L+     HRDLKS+NI L   EDNT  
Sbjct: 103 GSSLYHHLHASETKFEMKKLIDIARQTARGMDYLHAKSIIHRDLKSNNIFL--HEDNT-- 158
Query: 383 QLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEV-ALATPGLFSFVNYSKSDAWT 441
            + I DFG + T KS  S  +     +L G++  MAPEV  +     +SF    +SD + 
Sbjct: 159 -VKIGDFGLA-TEKSRWSGSHQFE--QLSGSILWMAPEVIRMQDSNPYSF----QSDVYA 210
Query: 442 AGTVAYEIFGHDNPFYQSARNTDYEVNA---------LPQLNTNVPEVMRRLVAKLLEND 492
            G V YE+     P Y +  N D  +           L ++ +N P+ M+RL+A+ L+  
Sbjct: 211 FGIVLYELMTGQLP-YSNINNRDQIIEMVGRGSLSPDLSKVRSNCPKRMKRLMAECLKKK 269
Query: 493 PSDRPS 498
             +RPS
Sbjct: 270 RDERPS 275

>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx4032 Length = 289

Iteration: 1
 Score = 65.5 bits (158), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 90/186 (48%), Gaps = 23/186 (12%)
Query: 323 NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 382
            + L ++L     +  M + + +  Q   G+ +L+     HRDLKS+NI L   EDNT  
Sbjct: 103 GSSLYHHLHASETKFEMKKLIDIARQTARGMDYLHAKSIIHRDLKSNNIFL--HEDNT-- 158
Query: 383 QLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEV-ALATPGLFSFVNYSKSDAWT 441
            + I DFG + T KS  S  +     +L G++  MAPEV  +     +SF    +SD + 
Sbjct: 159 -VKIGDFGLA-TEKSRWSGSHQFE--QLSGSILWMAPEVIRMQDSNPYSF----QSDVYA 210
Query: 442 AGTVAYEIFGHDNPFYQSARNTDYEVNA---------LPQLNTNVPEVMRRLVAKLLEND 492
            G V YE+     P Y +  N D  +           L ++ +N P+ M+RL+A+ L+  
Sbjct: 211 FGIVLYELMTGQLP-YSNINNRDQIIEMVGRGSLSPDLSKVRSNCPKRMKRLMAECLKKK 269
Query: 493 PSDRPS 498
             +RPS
Sbjct: 270 RDERPS 275

>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720 Length = 280

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 90/186 (48%), Gaps = 25/186 (13%)
Query: 324 TDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQ 383
           + L ++L     +  M + + +  Q   G+ +L+     HRDLKS+NI L   EDNT   
Sbjct: 92  SSLYHHLHASETKFEMKKLIDIARQTARGMDYLHAKSIIHRDLKSNNIFL--HEDNTVK- 148
Query: 384 LVITDFG-SSYTNKSGLSMQYSSADIELGGNVALMAPEV-ALATPGLFSFVNYSKSDAWT 441
             I DFG ++  ++   S Q+     +L G++  MAPEV  +     +SF    +SD + 
Sbjct: 149 --IGDFGLATVKSRWSGSHQFE----QLSGSILWMAPEVIRMQDSNPYSF----QSDVYA 198
Query: 442 AGTVAYEIFGHDNPFYQSARNTDYEVNA---------LPQLNTNVPEVMRRLVAKLLEND 492
            G V YE+     P Y +  N D  +           L ++ +N P+ M+RL+A+ L+  
Sbjct: 199 FGIVLYELMTGQLP-YSNINNRDQIIEMVGRGSLSPDLSKVRSNCPKRMKRLMAECLKKK 257
Query: 493 PSDRPS 498
             +RPS
Sbjct: 258 RDERPS 263

>pdb|3UDB|A Chain A, Crystal Structure Of Snrk2.6 Length = 317

Iteration: 1
 Score = 62.0 bits (149), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 79/173 (45%), Gaps = 22/173 (12%)
Query: 334 CAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSY 393
             + S  E    F QL+ GV++ +  + AHRDLK +N LLD S     P+L I DFG  Y
Sbjct: 109 AGRFSEDEARFFFQQLISGVSYAHAMQVAHRDLKLENTLLDGS---PAPRLKIADFG--Y 163
Query: 394 TNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHD 453
           +  S L  Q  SA     G  A +APEV L         +   +D W+ G   Y +    
Sbjct: 164 SKASVLHSQPKSA----VGTPAYIAPEVLLKKE-----YDGKVADVWSCGVTLYVMLVGA 214
Query: 454 NPFY--QSARNTDYEVNALPQLNTNVPEVM------RRLVAKLLENDPSDRPS 498
            PF   +  +N    ++ +  +   +P+ +      R L++++   DP+ R S
Sbjct: 215 YPFEDPEEPKNFRKTIHRILNVQYAIPDYVHISPECRHLISRIFVADPAKRIS 267

>pdb|3LM0|A Chain A, Crystal Structure Of Human SerineTHREONINE KINASE 17B (STK17B) Length = 327

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 90/210 (42%), Gaps = 23/210 (10%)
Query: 311 RNMSLFILMKKYNTDLRNY---LRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLK 367
            N S  IL+ +Y      +   L E    +S ++ + L  Q+LEGV +L+ +   H DLK
Sbjct: 99  ENTSEIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLHQNNIVHLDLK 158
Query: 368 SDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG 427
             NILL  S       + I DFG S   K G + +      E+ G    +APE+    P 
Sbjct: 159 PQNILL--SSIYPLGDIKIVDFGMS--RKIGHACELR----EIMGTPEYLAPEILNYDPI 210
Query: 428 LFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY------EVNALPQLNTNVPEVM 481
                  + +D W  G +AY +  H +PF        Y       V+   +  ++V ++ 
Sbjct: 211 T------TATDMWNIGIIAYMLLTHTSPFVGEDNQETYLNISQVNVDYSEETFSSVSQLA 264
Query: 482 RRLVAKLLENDPSDRPSAELAATVCQLYLW 511
              +  LL  +P  RP+AE+  +   L  W
Sbjct: 265 TDFIQSLLVKNPEKRPTAEICLSHSWLQQW 294

>pdb|3UC3|A Chain A, The Crystal Structure Of Snf1-Related Kinase 2.3 Length = 361

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 76/172 (44%), Gaps = 22/172 (12%)
Query: 335 AQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYT 394
            + S  E    F QLL GV++ +  +  HRDLK +N LLD S     P+L I DFG  Y+
Sbjct: 111 GRFSEDEARFFFQQLLSGVSYCHSMQICHRDLKLENTLLDGS---PAPRLKICDFG--YS 165
Query: 395 NKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDN 454
             S L  Q  S      G  A +APEV L         +   +D W+ G   Y +     
Sbjct: 166 KSSVLHSQPKST----VGTPAYIAPEVLLRQE-----YDGKIADVWSCGVTLYVMLVGAY 216
Query: 455 PFYQSARNTDYE--VNALPQLNTNVPEVMR------RLVAKLLENDPSDRPS 498
           PF       DY   +  +  +  ++P+ +R       L++++   DP+ R S
Sbjct: 217 PFEDPEEPRDYRKTIQRILSVKYSIPDDIRISPECCHLISRIFVADPATRIS 268

>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006 Length = 276

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 78/160 (48%), Gaps = 23/160 (14%)
Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
           Q  +G+ +L+     HRDLKS+NI L   ED T     I DFG + T KS  S  +    
Sbjct: 112 QTAQGMDYLHAKSIIHRDLKSNNIFL--HEDLTVK---IGDFGLA-TEKSRWSGSHQFE- 164
Query: 408 IELGGNVALMAPEVA-LATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD-- 464
            +L G++  MAPEV  +     +SF    +SD +  G V YE+     P Y +  N D  
Sbjct: 165 -QLSGSILWMAPEVIRMQDKNPYSF----QSDVYAFGIVLYELMTGQLP-YSNINNRDQI 218
Query: 465 -------YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRP 497
                  Y    L ++ +N P+ M+RL+A+ L+    +RP
Sbjct: 219 IFMVGRGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERP 258

>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An Aminoisoquinoline Inhibitor Length = 300

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 78/160 (48%), Gaps = 23/160 (14%)
Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
           Q  +G+ +L+     HRDLKS+NI L   ED T     I DFG + T KS  S  +    
Sbjct: 132 QTAQGMDYLHAKSIIHRDLKSNNIFL--HEDLTVK---IGDFGLA-TEKSRWSGSHQFE- 184
Query: 408 IELGGNVALMAPEVA-LATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD-- 464
            +L G++  MAPEV  +     +SF    +SD +  G V YE+     P Y +  N D  
Sbjct: 185 -QLSGSILWMAPEVIRMQDKNPYSF----QSDVYAFGIVLYELMTGQLP-YSNINNRDQI 238
Query: 465 -------YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRP 497
                  Y    L ++ +N P+ M+RL+A+ L+    +RP
Sbjct: 239 IFMVGRGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERP 278

>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii Dihydroquinazoline Inhibitor Length = 307

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 78/160 (48%), Gaps = 23/160 (14%)
Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
           Q  +G+ +L+     HRDLKS+NI L   ED T     I DFG + T KS  S  +    
Sbjct: 140 QTAQGMDYLHAKSIIHRDLKSNNIFL--HEDLTVK---IGDFGLA-TEKSRWSGSHQFE- 192
Query: 408 IELGGNVALMAPEVA-LATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD-- 464
            +L G++  MAPEV  +     +SF    +SD +  G V YE+     P Y +  N D  
Sbjct: 193 -QLSGSILWMAPEVIRMQDKNPYSF----QSDVYAFGIVLYELMTGQLP-YSNINNRDQI 246
Query: 465 -------YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRP 497
                  Y    L ++ +N P+ M+RL+A+ L+    +RP
Sbjct: 247 IFMVGRGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERP 286

>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A Tetrahydronaphthalene Inhibitor Length = 282

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 79/161 (49%), Gaps = 25/161 (15%)
Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG-SSYTNKSGLSMQYSSA 406
           Q  +G+ +L+     HRDLKS+NI L   ED T     I DFG ++  ++   S Q+   
Sbjct: 114 QTAQGMDYLHAKSIIHRDLKSNNIFL--HEDLTVK---IGDFGLATVKSRWSGSHQFE-- 166
Query: 407 DIELGGNVALMAPEVA-LATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD- 464
             +L G++  MAPEV  +     +SF    +SD +  G V YE+     P Y +  N D 
Sbjct: 167 --QLSGSILWMAPEVIRMQDKNPYSF----QSDVYAFGIVLYELMTGQLP-YSNINNRDQ 219
Query: 465 --------YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRP 497
                   Y    L ++ +N P+ M+RL+A+ L+    +RP
Sbjct: 220 IIFMVGRGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERP 260

>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006 Length = 276

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 79/161 (49%), Gaps = 25/161 (15%)
Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG-SSYTNKSGLSMQYSSA 406
           Q  +G+ +L+     HRDLKS+NI L   ED T     I DFG ++  ++   S Q+   
Sbjct: 112 QTAQGMDYLHAKSIIHRDLKSNNIFL--HEDLTVK---IGDFGLATVKSRWSGSHQFE-- 164
Query: 407 DIELGGNVALMAPEVA-LATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD- 464
             +L G++  MAPEV  +     +SF    +SD +  G V YE+     P Y +  N D 
Sbjct: 165 --QLSGSILWMAPEVIRMQDKNPYSF----QSDVYAFGIVLYELMTGQLP-YSNINNRDQ 217
Query: 465 --------YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRP 497
                   Y    L ++ +N P+ M+RL+A+ L+    +RP
Sbjct: 218 IIFMVGRGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERP 258

>pdb|4H58|A Chain A, Braf In Complex With Compound 3 Length = 275

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 79/161 (49%), Gaps = 25/161 (15%)
Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG-SSYTNKSGLSMQYSSA 406
           Q  +G+ +L+     HRDLKS+NI L   ED T     I DFG ++  ++   S Q+   
Sbjct: 112 QTAQGMDYLHAKSIIHRDLKSNNIFL--HEDLTVK---IGDFGLATVKSRWSGSHQFE-- 164
Query: 407 DIELGGNVALMAPEVA-LATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD- 464
             +L G++  MAPEV  +     +SF    +SD +  G V YE+     P Y +  N D 
Sbjct: 165 --QLSGSILWMAPEVIRMQDKNPYSF----QSDVYAFGIVLYELMTGQLP-YSNINNRDQ 217
Query: 465 --------YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRP 497
                   Y    L ++ +N P+ M+RL+A+ L+    +RP
Sbjct: 218 IIFMVGRGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERP 258

>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 284

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 79/161 (49%), Gaps = 25/161 (15%)
Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG-SSYTNKSGLSMQYSSA 406
           Q  +G+ +L+     HRDLKS+NI L   ED T     I DFG ++  ++   S Q+   
Sbjct: 117 QTAQGMDYLHAKSIIHRDLKSNNIFL--HEDLTVK---IGDFGLATVKSRWSGSHQFE-- 169
Query: 407 DIELGGNVALMAPEVA-LATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD- 464
             +L G++  MAPEV  +     +SF    +SD +  G V YE+     P Y +  N D 
Sbjct: 170 --QLSGSILWMAPEVIRMQDKNPYSF----QSDVYAFGIVLYELMTGQLP-YSNINNRDQ 222
Query: 465 --------YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRP 497
                   Y    L ++ +N P+ M+RL+A+ L+    +RP
Sbjct: 223 IIFMVGRGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERP 263

>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885 Length = 281

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 84/173 (48%), Gaps = 25/173 (14%)
Query: 336 QLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG-SSYT 394
           +  M + + +  Q  +G+ +L+     HRDLKS+NI L   ED T     I DFG ++  
Sbjct: 105 KFEMIKLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFL--HEDLTVK---IGDFGLATVK 159
Query: 395 NKSGLSMQYSSADIELGGNVALMAPEVA-LATPGLFSFVNYSKSDAWTAGTVAYEIFGHD 453
           ++   S Q+     +L G++  MAPEV  +     +SF    +SD +  G V YE+    
Sbjct: 160 SRWSGSHQFE----QLSGSILWMAPEVIRMQDKNPYSF----QSDVYAFGIVLYELMTGQ 211
Query: 454 NPFYQSARNTD---------YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRP 497
            P Y +  N D         Y    L ++ +N P+ M+RL+A+ L+    +RP
Sbjct: 212 LP-YSNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERP 263

>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine Inhibitor Length = 306

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 79/161 (49%), Gaps = 25/161 (15%)
Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG-SSYTNKSGLSMQYSSA 406
           Q  +G+ +L+     HRDLKS+NI L   ED T     I DFG ++  ++   S Q+   
Sbjct: 139 QTAQGMDYLHAKSIIHRDLKSNNIFL--HEDLTVK---IGDFGLATVKSRWSGSHQFE-- 191
Query: 407 DIELGGNVALMAPEVA-LATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD- 464
             +L G++  MAPEV  +     +SF    +SD +  G V YE+     P Y +  N D 
Sbjct: 192 --QLSGSILWMAPEVIRMQDKNPYSF----QSDVYAFGIVLYELMTGQLP-YSNINNRDQ 244
Query: 465 --------YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRP 497
                   Y    L ++ +N P+ M+RL+A+ L+    +RP
Sbjct: 245 IIFMVGRGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERP 285

>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase Length = 307

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 79/161 (49%), Gaps = 25/161 (15%)
Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG-SSYTNKSGLSMQYSSA 406
           Q  +G+ +L+     HRDLKS+NI L   ED T     I DFG ++  ++   S Q+   
Sbjct: 140 QTAQGMDYLHAKSIIHRDLKSNNIFL--HEDLTVK---IGDFGLATVKSRWSGSHQFE-- 192
Query: 407 DIELGGNVALMAPEVA-LATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD- 464
             +L G++  MAPEV  +     +SF    +SD +  G V YE+     P Y +  N D 
Sbjct: 193 --QLSGSILWMAPEVIRMQDKNPYSF----QSDVYAFGIVLYELMTGQLP-YSNINNRDQ 245
Query: 465 --------YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRP 497
                   Y    L ++ +N P+ M+RL+A+ L+    +RP
Sbjct: 246 IIFMVGRGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERP 286

>pdb|2JC6|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein Kinase 1d Length = 334

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 22/166 (13%)
Query: 345 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYS 404
           L  Q+L+ V +L+     HRDLK +N+L    ++ +  +++I+DFG S     G  M  +
Sbjct: 125 LIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDEES--KIMISDFGLSKMEGKGDVMSTA 182
Query: 405 SADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNT 463
                  G    +APEV    P       YSK+ D W+ G +AY +     PFY    + 
Sbjct: 183 C------GTPGYVAPEVLAQKP-------YSKAVDCWSIGVIAYILLCGYPPFYDENDSK 229
Query: 464 DYE--VNALPQLNT----NVPEVMRRLVAKLLENDPSDRPSAELAA 503
            +E  + A  + ++    ++ +  +  +  L+E DP+ R + E AA
Sbjct: 230 LFEQILKAEYEFDSPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAA 275

>pdb|3VW6|A Chain A, Crystal Structure Of Human Apoptosis Signal-Regulating Kinase 1 (Ask1) With Imidazopyridine Inhibitor Length = 269

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 93/203 (45%), Gaps = 25/203 (12%)
Query: 307 GGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLF--TQLLEGVTHLNMHRTAH 363
           G +  N  + I M++     L   LR +   L  +E+ + F   Q+LEG+ +L+ ++  H
Sbjct: 72  GSFSENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQIVH 131
Query: 364 RDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVAL 423
           RD+K DN+L+    +     L I+DFG+S    +G++    +      G +  MAPE+  
Sbjct: 132 RDIKGDNVLI----NTYSGVLKISDFGTS-KRLAGINPCTET----FTGTLQYMAPEIID 182
Query: 424 ATPGLFSFVNYSK-SDAWTAGTVAYEIFGHDNPFYQ--SARNTDYEVNALPQLNTNVPEV 480
             P       Y K +D W+ G    E+     PFY+    +   ++V    +++  +PE 
Sbjct: 183 KGP-----RGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFKVGMF-KVHPEIPES 236
Query: 481 M----RRLVAKLLENDPSDRPSA 499
           M    +  + K  E DP  R  A
Sbjct: 237 MSAEAKAFILKCFEPDPDKRACA 259

>pdb|3UJG|A Chain A, Crystal Structure Of Snrk2.6 In Complex With Hab1 Length = 361

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 77/172 (44%), Gaps = 22/172 (12%)
Query: 335 AQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYT 394
            + S  E    F QL+ GV++ +  +  HRDLK +N LLD S     P+L I DFG  Y+
Sbjct: 109 GRFSEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGS---PAPRLKICDFG--YS 163
Query: 395 NKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDN 454
             S L  Q  S      G  A +APEV L         +   +D W+ G   Y +     
Sbjct: 164 KSSVLHSQPKST----VGTPAYIAPEVLLKKE-----YDGKVADVWSCGVTLYVMLVGAY 214
Query: 455 PFY--QSARNTDYEVNALPQLNTNVPEVM------RRLVAKLLENDPSDRPS 498
           PF   +  +N    ++ +  +   +P+ +      R L++++   DP+ R S
Sbjct: 215 PFEDPEEPKNFRKTIHRILNVQYAIPDYVHISPECRHLISRIFVADPAKRIS 266

>pdb|2CLQ|A Chain A, Structure Of Mitogen-Activated Protein Kinase Kinase Kinase 5 Length = 295

Iteration: 1
 Score = 58.9 bits (141), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 93/203 (45%), Gaps = 25/203 (12%)
Query: 307 GGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLF--TQLLEGVTHLNMHRTAH 363
           G +  N  + I M++     L   LR +   L  +E+ + F   Q+LEG+ +L+ ++  H
Sbjct: 86  GSFSENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQIVH 145
Query: 364 RDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVAL 423
           RD+K DN+L+    +     L I+DFG+S    +G++    +      G +  MAPE+  
Sbjct: 146 RDIKGDNVLI----NTYSGVLKISDFGTS-KRLAGINPCTET----FTGTLQYMAPEIID 196
Query: 424 ATPGLFSFVNYSK-SDAWTAGTVAYEIFGHDNPFYQ--SARNTDYEVNALPQLNTNVPEV 480
             P       Y K +D W+ G    E+     PFY+    +   ++V    +++  +PE 
Sbjct: 197 KGP-----RGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFKVGMF-KVHPEIPES 250
Query: 481 M----RRLVAKLLENDPSDRPSA 499
           M    +  + K  E DP  R  A
Sbjct: 251 MSAEAKAFILKCFEPDPDKRACA 273

>pdb|3UC4|A Chain A, The Crystal Structure Of Snf1-Related Kinase 2.6 Length = 362

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 77/172 (44%), Gaps = 22/172 (12%)
Query: 335 AQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYT 394
            + S  E    F QL+ GV++ +  +  HRDLK +N LLD S     P+L I DFG  Y+
Sbjct: 110 GRFSEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGS---PAPRLKICDFG--YS 164
Query: 395 NKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDN 454
             S L  Q  S      G  A +APEV L         +   +D W+ G   Y +     
Sbjct: 165 KSSVLHSQPKST----VGTPAYIAPEVLLKKE-----YDGKVADVWSCGVTLYVMLVGAY 215
Query: 455 PFY--QSARNTDYEVNALPQLNTNVPEVM------RRLVAKLLENDPSDRPS 498
           PF   +  +N    ++ +  +   +P+ +      R L++++   DP+ R S
Sbjct: 216 PFEDPEEPKNFRKTIHRILNVQYAIPDYVHISPECRHLISRIFVADPAKRIS 267

>pdb|3DXN|A Chain A, Crystal Structure Of The Calcium-dependent Kinase From Toxoplasma Gondii, 541.m00134, Kinase Domain Length = 287

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 82/182 (45%), Gaps = 30/182 (16%)
Query: 330 LRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDF 389
           LR++ +++   +  ++  Q+L G T+L+ H   HRDLK +N+LL+    +   ++V  DF
Sbjct: 114 LRQKFSEV---DAAVIMKQVLSGTTYLHKHNIVHRDLKPENLLLESKSRDALIKIV--DF 168
Query: 390 GSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEI 449
           G S   + G  M+      E  G    +APEV              K D W+ G + Y +
Sbjct: 169 GLSAHFEVGGKMK------ERLGTAYYIAPEVLRKKYD-------EKCDVWSCGVILYIL 215
Query: 450 FGHDNPFYQSARNTDYEV---------NALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
                PF      TD E+         +  P   T V +  ++LV  +L  +PS R SAE
Sbjct: 216 LCGYPPF---GGQTDQEILKRVEKGKFSFDPPDWTQVSDEAKQLVKLMLTYEPSKRISAE 272
Query: 501 LA 502
            A
Sbjct: 273 EA 274

>pdb|1YRP|A Chain A, Catalytic Domain Of Human Zip Kinase Phosphorylated At Thr265 Length = 278

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 102/237 (43%), Gaps = 57/237 (24%)
Query: 271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYL 330
           HPN++ +H    D   +  D  LI           +GG                +L ++L
Sbjct: 74  HPNIITLH----DIFENKTDVVLILELV-------SGG----------------ELFDFL 106
Query: 331 RERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG 390
            E+ + L+  E      Q+L+GV +L+  R AH DLK +NI+L   ++   P++ + DFG
Sbjct: 107 AEKES-LTEDEATQFLKQILDGVHYLHSKRIAHFDLKPENIML-LDKNVPNPRIKLIDFG 164
Query: 391 SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP-GLFSFVNYSKSDAWTAGTVAYEI 449
            ++  ++G   +       + G    +APE+    P GL       ++D W+ G + Y +
Sbjct: 165 IAHKIEAGNEFK------NIFGTPEFVAPEIVNYEPLGL-------EADMWSIGVITYIL 211
Query: 450 FGHDNPFYQ----------SARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDR 496
               +PF            SA N D++     +  +N  E+ +  + +LL  DP  R
Sbjct: 212 LSGASPFLGETKQETLTNISAVNYDFD----EEYFSNTSELAKDFIRRLLVKDPKRR 264

>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1) Length = 307

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 86/185 (46%), Gaps = 25/185 (13%)
Query: 324 TDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQ 383
           + L  +L  +  +  M + + +  Q  +G+ +L+     HRD+KS+NI L     +    
Sbjct: 116 SSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFL-----HEGLT 170
Query: 384 LVITDFGSSYTNKSGLSMQYSSADIEL-GGNVALMAPEVA-LATPGLFSFVNYSKSDAWT 441
           + I DFG + T KS  S    S  +E   G+V  MAPEV  +     FSF    +SD ++
Sbjct: 171 VKIGDFGLA-TVKSRWS---GSQQVEQPTGSVLWMAPEVIRMQDNNPFSF----QSDVYS 222
Query: 442 AGTVAYEIFGHDNPFYQSARNTD---------YEVNALPQLNTNVPEVMRRLVAKLLEND 492
            G V YE+   + P Y    N D         Y    L +L  N P+ M+RLVA  ++  
Sbjct: 223 YGIVLYELMTGELP-YSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKV 281
Query: 493 PSDRP 497
             +RP
Sbjct: 282 KEERP 286

>pdb|2R5T|A Chain A, Crystal Structure Of Inactive Serum And Glucocorticoid- Regulated Kinase 1 In Complex With Amp-Pnp Length = 373

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 79/176 (44%), Gaps = 28/176 (15%)
Query: 331 RERCAQLSMHERVLLFT-QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDF 389
           RERC    +  R   +  ++   + +L+     +RDLK +NILLD         +V+TDF
Sbjct: 132 RERCF---LEPRARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQG-----HIVLTDF 183
Query: 390 GSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYE 448
           G    N     ++++S      G    +APEV    P       Y ++ D W  G V YE
Sbjct: 184 GLCKEN-----IEHNSTTSTFCGTPEYLAPEVLHKQP-------YDRTVDWWCLGAVLYE 231
Query: 449 IFGHDNPFYQSARNT----DYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
           +     PFY  +RNT    D  +N   QL  N+    R L+  LL+ D + R  A+
Sbjct: 232 MLYGLPPFY--SRNTAEMYDNILNKPLQLKPNITNSARHLLEGLLQKDRTKRLGAK 285

>pdb|2J90|A Chain A, Crystal Structure Of Human Zip Kinase In Complex With A Tetracyclic Pyridone Inhibitor (pyridone 6) Length = 304

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 102/237 (43%), Gaps = 57/237 (24%)
Query: 271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYL 330
           HPN++ +H    D   +  D  LI           +GG                +L ++L
Sbjct: 88  HPNIITLH----DIFENKTDVVLILELV-------SGG----------------ELFDFL 120
Query: 331 RERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG 390
            E+ + L+  E      Q+L+GV +L+  R AH DLK +NI+L   ++   P++ + DFG
Sbjct: 121 AEKES-LTEDEATQFLKQILDGVHYLHSKRIAHFDLKPENIML-LDKNVPNPRIKLIDFG 178
Query: 391 SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP-GLFSFVNYSKSDAWTAGTVAYEI 449
            ++  ++G   +       + G    +APE+    P GL       ++D W+ G + Y +
Sbjct: 179 IAHKIEAGNEFK------NIFGTPEFVAPEIVNYEPLGL-------EADMWSIGVITYIL 225
Query: 450 FGHDNPFYQ----------SARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDR 496
               +PF            SA N D++     +  +N  E+ +  + +LL  DP  R
Sbjct: 226 LSGASPFLGETKQETLTNISAVNYDFD----EEYFSNTSELAKDFIRRLLVKDPKRR 278

>pdb|2PHK|A Chain A, The Crystal Structure Of A Phosphorylase Kinase Peptide Substrate Complex: Kinase Substrate Recognition Length = 277

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 94/202 (46%), Gaps = 36/202 (17%)
Query: 315 LFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLD 374
           +F LMKK   +L +YL E+   LS  E   +   LLE +  L+     HRDLK +NILLD
Sbjct: 89  VFDLMKK--GELFDYLTEKVT-LSEKETRKIMRALLEVICALHKLNIVHRDLKPENILLD 145
Query: 375 CSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALAT-----PGLF 429
              D+    + +TDFG S     G  ++      E+ G  + +APE+   +     PG  
Sbjct: 146 ---DDM--NIKLTDFGFSCQLDPGEKLR------EVCGTPSYLAPEIIECSMNDNHPG-- 192
Query: 430 SFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSAR--------NTDYEVNALPQLNTNVPEV 480
               Y K  D W+ G + Y +     PF+   +        + +Y+  + P+ + +  + 
Sbjct: 193 ----YGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMSGNYQFGS-PEWD-DYSDT 246
Query: 481 MRRLVAKLLENDPSDRPSAELA 502
           ++ LV++ L   P  R +AE A
Sbjct: 247 VKDLVSRFLVVQPQKRYTAEEA 268

>pdb|3BHY|A Chain A, Crystal Structure Of Human Death Associated Protein Kinase 3 (Dapk3) In Complex With A Beta-Carboline Ligand Length = 283

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 102/237 (43%), Gaps = 57/237 (24%)
Query: 271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYL 330
           HPN++ +H    D   +  D  LI           +GG                +L ++L
Sbjct: 67  HPNIITLH----DIFENKTDVVLILELV-------SGG----------------ELFDFL 99
Query: 331 RERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG 390
            E+ + L+  E      Q+L+GV +L+  R AH DLK +NI+L   ++   P++ + DFG
Sbjct: 100 AEKES-LTEDEATQFLKQILDGVHYLHSKRIAHFDLKPENIML-LDKNVPNPRIKLIDFG 157
Query: 391 SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP-GLFSFVNYSKSDAWTAGTVAYEI 449
            ++  ++G   +       + G    +APE+    P GL       ++D W+ G + Y +
Sbjct: 158 IAHKIEAGNEFK------NIFGTPEFVAPEIVNYEPLGL-------EADMWSIGVITYIL 204
Query: 450 FGHDNPFYQ----------SARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDR 496
               +PF            SA N D++     +  +N  E+ +  + +LL  DP  R
Sbjct: 205 LSGASPFLGETKQETLTNISAVNYDFD----EEYFSNTSELAKDFIRRLLVKDPKRR 257

>pdb|1PHK|A Chain A, Two Structures Of The Catalytic Domain Of Phosphorylase, Kinase: An Active Protein Kinase Complexed With Nucleotide, Substrate-Analogue And Product Length = 298

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 94/202 (46%), Gaps = 36/202 (17%)
Query: 315 LFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLD 374
           +F LMKK   +L +YL E+   LS  E   +   LLE +  L+     HRDLK +NILLD
Sbjct: 102 VFDLMKK--GELFDYLTEKVT-LSEKETRKIMRALLEVICALHKLNIVHRDLKPENILLD 158
Query: 375 CSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALAT-----PGLF 429
              D+    + +TDFG S     G  ++      E+ G  + +APE+   +     PG  
Sbjct: 159 ---DDM--NIKLTDFGFSCQLDPGEKLR------EVCGTPSYLAPEIIECSMNDNHPG-- 205
Query: 430 SFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSAR--------NTDYEVNALPQLNTNVPEV 480
               Y K  D W+ G + Y +     PF+   +        + +Y+  + P+ + +  + 
Sbjct: 206 ----YGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMSGNYQFGS-PEWD-DYSDT 259
Query: 481 MRRLVAKLLENDPSDRPSAELA 502
           ++ LV++ L   P  R +AE A
Sbjct: 260 VKDLVSRFLVVQPQKRYTAEEA 281

>pdb|2J0L|A Chain A, Crystal Structure Of A The Active Conformation Of The Kinase Domain Of Focal Adhesion Kinase With A Phosphorylated Activation Loop Length = 276

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 78/187 (41%), Gaps = 22/187 (11%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           +LR++L+ R   L +   +L   QL   + +L   R  HRD+ + N+L+     N C +L
Sbjct: 96  ELRSFLQVRKFSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVS---SNDCVKL 152
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY-SKSDAWTAG 443
              DFG S   +     + S   +     +  MAPE         +F  + S SD W  G
Sbjct: 153 --GDFGLSRYMEDSTXXKASKGKLP----IKWMAPES-------INFRRFTSASDVWMFG 199
Query: 444 TVAYEIFGHDNPFYQSARNTDY----EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS- 498
              +EI  H    +Q  +N D     E      +  N P  +  L+ K    DPS RP  
Sbjct: 200 VCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRF 259
Query: 499 AELAATV 505
            EL A +
Sbjct: 260 TELKAQL 266

>pdb|3HZT|A Chain A, Crystal Structure Of Toxoplasma Gondii Cdpk3, Tgme49_105860 Length = 467

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 90/207 (43%), Gaps = 37/207 (17%)
Query: 330 LRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDF 389
           LR++ +++   +  ++  Q+L G T+L+ H   HRDLK +N+LL+    +   ++V  DF
Sbjct: 97  LRQKFSEV---DAAVIMKQVLSGTTYLHKHNIVHRDLKPENLLLESKSRDALIKIV--DF 151
Query: 390 GSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEI 449
           G S   + G  M+      E  G    +APEV              K D W+ G + Y +
Sbjct: 152 GLSAHFEVGGKMK------ERLGTAYYIAPEVLRKKYD-------EKCDVWSCGVILYIL 198
Query: 450 FGHDNPFYQSARNTDYEV---------NALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
                PF      TD E+         +  P   T V +  ++LV  +L  +PS R SAE
Sbjct: 199 LCGYPPF---GGQTDQEILKRVEKGKFSFDPPDWTQVSDEAKQLVKLMLTYEPSKRISAE 255
Query: 501 LA------ATVC-QLYLWAPKHWLYGA 520
            A         C Q +    KH L GA
Sbjct: 256 EALNHPWIVKFCSQKHTDVGKHALTGA 282

>pdb|3DAK|A Chain A, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain Length = 290

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 22/167 (13%)
Query: 345 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYS 404
           +  ++LEG+ +L+ +   HRD+K+ NILL   ED +   + I DFG S    +G  +  +
Sbjct: 121 ILREVLEGLEYLHKNGQIHRDVKAGNILL--GEDGS---VQIADFGVSAFLATGGDITRN 175
Query: 405 SADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD 464
                  G    MAPEV     G + F    K+D W+ G  A E+     P+++      
Sbjct: 176 KVRKTFVGTPCWMAPEVMEQVRG-YDF----KADIWSFGITAIELATGAAPYHKYPPMKV 230
Query: 465 YEV---NALPQLNTNVPE---------VMRRLVAKLLENDPSDRPSA 499
             +   N  P L T V +           R++++  L+ DP  RP+A
Sbjct: 231 LMLTLQNDPPSLETGVQDKEMLKKYGKSFRKMISLCLQKDPEKRPTA 277

>pdb|3NYN|A Chain A, Crystal Structure Of G Protein-Coupled Receptor Kinase 6 In Complex With Sangivamycin Length = 576

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 66/164 (40%), Gaps = 31/164 (18%)
Query: 343 VLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQ 402
           V    ++  G+  L+  R  +RDLK +NILLD             D G    +  GL++ 
Sbjct: 289 VFYAAEICCGLEDLHRERIVYRDLKPENILLD-------------DHGHIRISDLGLAVH 335
Query: 403 YSSADIELG--GNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSA 460
                   G  G V  MAPEV       FS       D W  G + YE+    +PF Q  
Sbjct: 336 VPEGQTIKGRVGTVGYMAPEVVKNERYTFS------PDWWALGCLLYEMIAGQSPFQQRK 389
Query: 461 RNTDYEVNALPQLNTNVPE--------VMRRLVAKLLENDPSDR 496
           +    E   + +L   VPE          R L ++LL  DP++R
Sbjct: 390 KKIKRE--EVERLVKEVPEEYSERFSPQARSLCSQLLCKDPAER 431

>pdb|4EBW|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In Complex With Novel Allosteric Inhibitor Length = 304

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 78/187 (41%), Gaps = 22/187 (11%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           +LR++L+ R   L +   +L   QL   + +L   R  HRD+ + N+L+     N C +L
Sbjct: 124 ELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVS---SNDCVKL 180
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY-SKSDAWTAG 443
              DFG S   +     + S   +     +  MAPE         +F  + S SD W  G
Sbjct: 181 --GDFGLSRYMEDSTYYKASKGKLP----IKWMAPES-------INFRRFTSASDVWMFG 227
Query: 444 TVAYEIFGHDNPFYQSARNTDY----EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS- 498
              +EI  H    +Q  +N D     E      +  N P  +  L+ K    DPS RP  
Sbjct: 228 VCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRF 287
Query: 499 AELAATV 505
            EL A +
Sbjct: 288 TELKAQL 294

>pdb|2JKM|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With Bis- Anilino Pyrimidine Inhibitor Length = 276

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 78/187 (41%), Gaps = 22/187 (11%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           +LR++L+ R   L +   +L   QL   + +L   R  HRD+ + N+L+     N C +L
Sbjct: 96  ELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVS---SNDCVKL 152
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY-SKSDAWTAG 443
              DFG S   +     + S   +     +  MAPE         +F  + S SD W  G
Sbjct: 153 --GDFGLSRYMEDSTYYKASKGKLP----IKWMAPES-------INFRRFTSASDVWMFG 199
Query: 444 TVAYEIFGHDNPFYQSARNTDY----EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS- 498
              +EI  H    +Q  +N D     E      +  N P  +  L+ K    DPS RP  
Sbjct: 200 VCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRF 259
Query: 499 AELAATV 505
            EL A +
Sbjct: 260 TELKAQL 266

>pdb|2J0M|B Chain B, Crystal Structure A Two-Chain Complex Between The Ferm And Kinase Domains Of Focal Adhesion Kinase. Length = 276

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 78/187 (41%), Gaps = 22/187 (11%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           +LR++L+ R   L +   +L   QL   + +L   R  HRD+ + N+L+     N C +L
Sbjct: 96  ELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVS---SNDCVKL 152
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY-SKSDAWTAG 443
              DFG S   +     + S   +     +  MAPE         +F  + S SD W  G
Sbjct: 153 --GDFGLSRYMEDSTYYKASKGKLP----IKWMAPES-------INFRRFTSASDVWMFG 199
Query: 444 TVAYEIFGHDNPFYQSARNTDY----EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS- 498
              +EI  H    +Q  +N D     E      +  N P  +  L+ K    DPS RP  
Sbjct: 200 VCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRF 259
Query: 499 AELAATV 505
            EL A +
Sbjct: 260 TELKAQL 266

>pdb|1MP8|A Chain A, Crystal Structure Of Focal Adhesion Kinase (Fak) Length = 281

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 78/187 (41%), Gaps = 22/187 (11%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           +LR++L+ R   L +   +L   QL   + +L   R  HRD+ + N+L+     N C +L
Sbjct: 101 ELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVS---SNDCVKL 157
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY-SKSDAWTAG 443
              DFG S   +     + S   +     +  MAPE         +F  + S SD W  G
Sbjct: 158 --GDFGLSRYMEDSTYYKASKGKLP----IKWMAPES-------INFRRFTSASDVWMFG 204
Query: 444 TVAYEIFGHDNPFYQSARNTDY----EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS- 498
              +EI  H    +Q  +N D     E      +  N P  +  L+ K    DPS RP  
Sbjct: 205 VCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRF 264
Query: 499 AELAATV 505
            EL A +
Sbjct: 265 TELKAQL 271

>pdb|2ACX|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 6 Bound To Amppnp Length = 576

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 66/164 (40%), Gaps = 31/164 (18%)
Query: 343 VLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQ 402
           V    ++  G+  L+  R  +RDLK +NILLD             D G    +  GL++ 
Sbjct: 289 VFYAAEICCGLEDLHRERIVYRDLKPENILLD-------------DHGHIRISDLGLAVH 335
Query: 403 YSSADIELG--GNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSA 460
                   G  G V  MAPEV       FS       D W  G + YE+    +PF Q  
Sbjct: 336 VPEGQTIKGRVGTVGYMAPEVVKNERYTFS------PDWWALGCLLYEMIAGQSPFQQRK 389
Query: 461 RNTDYEVNALPQLNTNVPEV--------MRRLVAKLLENDPSDR 496
           +    E   + +L   VPE          R L ++LL  DP++R
Sbjct: 390 KKIKRE--EVERLVKEVPEEYSERFSPQARSLCSQLLCKDPAER 431

>pdb|2VWI|A Chain A, Structure Of The Osr1 Kinase, A Hypertension Drug Target Length = 303

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 22/167 (13%)
Query: 345 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYS 404
           +  ++LEG+ +L+ +   HRD+K+ NILL   ED +   + I DFG S    +G  +  +
Sbjct: 126 ILREVLEGLEYLHKNGQIHRDVKAGNILL--GEDGS---VQIADFGVSAFLATGGDITRN 180
Query: 405 SADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD 464
                  G    MAPEV     G + F    K+D W+ G  A E+     P+++      
Sbjct: 181 KVRKTFVGTPCWMAPEVMEQVRG-YDF----KADIWSFGITAIELATGAAPYHKYPPMKV 235
Query: 465 YEV---NALPQLNTNVPE---------VMRRLVAKLLENDPSDRPSA 499
             +   N  P L T V +           R++++  L+ DP  RP+A
Sbjct: 236 LMLTLQNDPPSLETGVQDKEMLKKYGKSFRKMISLCLQKDPEKRPTA 282

>pdb|3PXK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With Pyrrolo[2,3- D]thiazole Length = 282

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 78/187 (41%), Gaps = 22/187 (11%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           +LR++L+ R   L +   +L   QL   + +L   R  HRD+ + N+L+     N C +L
Sbjct: 99  ELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVS---SNDCVKL 155
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY-SKSDAWTAG 443
              DFG S   +     + S   +     +  MAPE         +F  + S SD W  G
Sbjct: 156 --GDFGLSRYMEDSTYYKASKGKLP----IKWMAPES-------INFRRFTSASDVWMFG 202
Query: 444 TVAYEIFGHDNPFYQSARNTDY----EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS- 498
              +EI  H    +Q  +N D     E      +  N P  +  L+ K    DPS RP  
Sbjct: 203 VCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRF 262
Query: 499 AELAATV 505
            EL A +
Sbjct: 263 TELKAQL 269

>pdb|2VD5|A Chain A, Structure Of Human Myotonic Dystrophy Protein Kinase In Complex With The Bisindoylmaleide Inhibitor Bim Viii Length = 412

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 81/184 (44%), Gaps = 18/184 (9%)
Query: 315 LFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
           L+++M+ Y   DL   L +   ++          +++  +  ++     HRD+K DNILL
Sbjct: 136 LYLVMEYYVGGDLLTLLSKFGERIPAEMARFYLAEIVMAIDSVHRLGYVHRDIKPDNILL 195
Query: 374 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN 433
           D      C  + + DFGS    ++  +++   A     G    ++PE+  A  G     +
Sbjct: 196 D-----RCGHIRLADFGSCLKLRADGTVRSLVA----VGTPDYLSPEILQAVGGGPGTGS 246
Query: 434 YS-KSDAWTAGTVAYEIFGHDNPFYQSARNTDY-------EVNALPQLNTNVPEVMRRLV 485
           Y  + D W  G  AYE+F    PFY  +    Y       E  +LP ++  VPE  R  +
Sbjct: 247 YGPECDWWALGVFAYEMFYGQTPFYADSTAETYGKIVHYKEHLSLPLVDEGVPEEARDFI 306
Query: 486 AKLL 489
            +LL
Sbjct: 307 QRLL 310

>pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1) Length = 350

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 91/195 (46%), Gaps = 21/195 (10%)
Query: 309 YGRNMSLFILMKKYNT-DLRNYLRERCAQLSMHERVL-LFTQLLEGVTHLNMHRTAHRDL 366
           +  N SL+I+M      DL   +  +   L   +++L  F Q+   + H++  +  HRD+
Sbjct: 92  FEENGSLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDRKILHRDI 151
Query: 367 KSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP 426
           KS NI L  ++D T   + + DFG +    S + +  +       G    ++PE+    P
Sbjct: 152 KSQNIFL--TKDGT---VQLGDFGIARVLNSTVELARACI-----GTPYYLSPEICENKP 201
Query: 427 GLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQ-SARNTDYEV--NALPQLNTNVPEVMRR 483
                   +KSD W  G V YE+    + F   S +N   ++   + P ++ +    +R 
Sbjct: 202 ------YNNKSDIWALGCVLYELCTLKHAFEAGSMKNLVLKIISGSFPPVSLHYSYDLRS 255
Query: 484 LVAKLLENDPSDRPS 498
           LV++L + +P DRPS
Sbjct: 256 LVSQLFKRNPRDRPS 270

>pdb|3BZ3|A Chain A, Crystal Structure Analysis Of Focal Adhesion Kinase With A Methanesulfonamide Diaminopyrimidine Inhibitor Length = 276

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 78/187 (41%), Gaps = 22/187 (11%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           +LR++L+ R   L +   +L   QL   + +L   R  HRD+ + N+L+     N C +L
Sbjct: 93  ELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVS---SNDCVKL 149
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY-SKSDAWTAG 443
              DFG S   +     + S   +     +  MAPE         +F  + S SD W  G
Sbjct: 150 --GDFGLSRYMEDSTYYKASKGKLP----IKWMAPES-------INFRRFTSASDVWMFG 196
Query: 444 TVAYEIFGHDNPFYQSARNTDY----EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS- 498
              +EI  H    +Q  +N D     E      +  N P  +  L+ K    DPS RP  
Sbjct: 197 VCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRF 256
Query: 499 AELAATV 505
            EL A +
Sbjct: 257 TELKAQL 263

>pdb|2ETM|A Chain A, Crystal Structure Of Focal Adhesion Kinase Domain Complexed With 7h-Pyrrolo [2,3-D] Pyrimidine Derivative Length = 281

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 78/187 (41%), Gaps = 22/187 (11%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           +LR++L+ R   L +   +L   QL   + +L   R  HRD+ + N+L+     N C +L
Sbjct: 98  ELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVS---SNDCVKL 154
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY-SKSDAWTAG 443
              DFG S   +     + S   +     +  MAPE         +F  + S SD W  G
Sbjct: 155 --GDFGLSRYMEDSTYYKASKGKLP----IKWMAPES-------INFRRFTSASDVWMFG 201
Query: 444 TVAYEIFGHDNPFYQSARNTDY----EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS- 498
              +EI  H    +Q  +N D     E      +  N P  +  L+ K    DPS RP  
Sbjct: 202 VCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRF 261
Query: 499 AELAATV 505
            EL A +
Sbjct: 262 TELKAQL 268

>pdb|4FG8|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-315 In Complex With Atp Length = 315

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 85/194 (43%), Gaps = 35/194 (18%)
Query: 345 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYS 404
           L  Q+L+ V +L+     HRDLK +N+L    ++++  +++I+DFG S     G  +  +
Sbjct: 121 LIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDS--KIMISDFGLSKMEDPGSVLSTA 178
Query: 405 SADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFY------ 457
                  G    +APEV    P       YSK+ D W+ G +AY +     PFY      
Sbjct: 179 C------GTPGYVAPEVLAQKP-------YSKAVDCWSIGVIAYILLCGYPPFYDENDAK 225
Query: 458 --QSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKH 515
             +     +YE ++ P  + ++ +  +  +  L+E DP  R         C+  L  P  
Sbjct: 226 LFEQILKAEYEFDS-PYWD-DISDSAKDFIRHLMEKDPEKR-------FTCEQALQHP-- 274
Query: 516 WLYGATPSHNEIMQ 529
           W+ G T     I Q
Sbjct: 275 WIAGDTALDKNIHQ 288

>pdb|1A06|A Chain A, Calmodulin-Dependent Protein Kinase From Rat Length = 332

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 85/194 (43%), Gaps = 35/194 (18%)
Query: 345 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYS 404
           L  Q+L+ V +L+     HRDLK +N+L    ++++  +++I+DFG S     G  +  +
Sbjct: 121 LIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDS--KIMISDFGLSKMEDPGSVLSTA 178
Query: 405 SADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFY------ 457
                  G    +APEV    P       YSK+ D W+ G +AY +     PFY      
Sbjct: 179 C------GTPGYVAPEVLAQKP-------YSKAVDCWSIGVIAYILLCGYPPFYDENDAK 225
Query: 458 --QSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKH 515
             +     +YE ++ P  + ++ +  +  +  L+E DP  R         C+  L  P  
Sbjct: 226 LFEQILKAEYEFDS-PYWD-DISDSAKDFIRHLMEKDPEKR-------FTCEQALQHP-- 274
Query: 516 WLYGATPSHNEIMQ 529
           W+ G T     I Q
Sbjct: 275 WIAGDTALDKNIHQ 288

>pdb|4FG7|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-293 In Complex With Atp Length = 293

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 85/194 (43%), Gaps = 35/194 (18%)
Query: 345 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYS 404
           L  Q+L+ V +L+     HRDLK +N+L    ++++  +++I+DFG S     G  +  +
Sbjct: 121 LIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDS--KIMISDFGLSKMEDPGSVLSTA 178
Query: 405 SADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFY------ 457
                  G    +APEV    P       YSK+ D W+ G +AY +     PFY      
Sbjct: 179 C------GTPGYVAPEVLAQKP-------YSKAVDCWSIGVIAYILLCGYPPFYDENDAK 225
Query: 458 --QSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKH 515
             +     +YE ++ P  + ++ +  +  +  L+E DP  R         C+  L  P  
Sbjct: 226 LFEQILKAEYEFDS-PYWD-DISDSAKDFIRHLMEKDPEKR-------FTCEQALQHP-- 274
Query: 516 WLYGATPSHNEIMQ 529
           W+ G T     I Q
Sbjct: 275 WIAGDTALDKNIHQ 288

>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In Complex With Ca2+ And Amppnp Length = 494

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 75/167 (44%), Gaps = 25/167 (14%)
Query: 344 LLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQY 403
           ++  Q+L GVT+L+ H   HRDLK +N+LL+  E +   ++V  DFG S   ++   M+ 
Sbjct: 140 VIIKQVLSGVTYLHKHNIVHRDLKPENLLLESKEKDALIKIV--DFGLSAVFENQKKMK- 196
Query: 404 SSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTV------AYEIFGH--DNP 455
                E  G    +APEV              K D W+ G +       Y  FG   D  
Sbjct: 197 -----ERLGTAYYIAPEVLRKKYD-------EKCDVWSIGVILFILLAGYPPFGGQTDQE 244
Query: 456 FYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA 502
             +      Y  ++ P+   NV E  + L+ ++L+ D   R SA+ A
Sbjct: 245 ILRKVEKGKYTFDS-PEWK-NVSEGAKDLIKQMLQFDSQRRISAQQA 289

>pdb|4FG9|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-320 In Complex With Atp Length = 320

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 85/194 (43%), Gaps = 35/194 (18%)
Query: 345 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYS 404
           L  Q+L+ V +L+     HRDLK +N+L    ++++  +++I+DFG S     G  +  +
Sbjct: 121 LIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDS--KIMISDFGLSKMEDPGSVLSTA 178
Query: 405 SADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFY------ 457
                  G    +APEV    P       YSK+ D W+ G +AY +     PFY      
Sbjct: 179 C------GTPGYVAPEVLAQKP-------YSKAVDCWSIGVIAYILLCGYPPFYDENDAK 225
Query: 458 --QSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKH 515
             +     +YE ++ P  + ++ +  +  +  L+E DP  R         C+  L  P  
Sbjct: 226 LFEQILKAEYEFDS-PYWD-DISDSAKDFIRHLMEKDPEKR-------FTCEQALQHP-- 274
Query: 516 WLYGATPSHNEIMQ 529
           W+ G T     I Q
Sbjct: 275 WIAGDTALDKNIHQ 288

>pdb|2CN5|A Chain A, Crystal Structure Of Human Chk2 In Complex With Adp Length = 329

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 76/167 (45%), Gaps = 20/167 (11%)
Query: 344 LLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQY 403
           L F Q+L  V +L+ +   HRDLK +N+LL   E++    + ITDFG S        +  
Sbjct: 124 LYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCL--IKITDFGHSKI------LGE 175
Query: 404 SSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQ---- 458
           +S    L G    +APEV ++         Y+++ D W+ G + +       PF +    
Sbjct: 176 TSLMRTLCGTPTYLAPEVLVSV----GTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQ 231
Query: 459 ---SARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA 502
                + T  + N +P++   V E    LV KLL  DP  R + E A
Sbjct: 232 VSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEA 278

>pdb|2YCF|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With Inhibitor Pv1531 Length = 322

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 76/167 (45%), Gaps = 20/167 (11%)
Query: 344 LLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQY 403
           L F Q+L  V +L+ +   HRDLK +N+LL   E++    + ITDFG S        +  
Sbjct: 118 LYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCL--IKITDFGHSKI------LGE 169
Query: 404 SSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQ---- 458
           +S    L G    +APEV ++         Y+++ D W+ G + +       PF +    
Sbjct: 170 TSLMRTLCGTPTYLAPEVLVSV----GTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQ 225
Query: 459 ---SARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA 502
                + T  + N +P++   V E    LV KLL  DP  R + E A
Sbjct: 226 VSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEA 272

>pdb|1QL6|A Chain A, The Catalytic Mechanism Of Phosphorylase Kinase Probed By Mutational Studies Length = 298

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 36/202 (17%)
Query: 315 LFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLD 374
           +F LMKK   +L +YL E+   LS  E   +   LLE +  L+     HRDLK +NILLD
Sbjct: 102 VFDLMKK--GELFDYLTEKVT-LSEKETRKIMRALLEVICALHKLNIVHRDLKPENILLD 158
Query: 375 CSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALAT-----PGLF 429
              D+    + +TDFG S     G  ++       + G  + +APE+   +     PG  
Sbjct: 159 ---DDM--NIKLTDFGFSCQLDPGEKLR------SVCGTPSYLAPEIIECSMNDNHPG-- 205
Query: 430 SFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSAR--------NTDYEVNALPQLNTNVPEV 480
               Y K  D W+ G + Y +     PF+   +        + +Y+  + P+ + +  + 
Sbjct: 206 ----YGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMSGNYQFGS-PEWD-DYSDT 259
Query: 481 MRRLVAKLLENDPSDRPSAELA 502
           ++ LV++ L   P  R +AE A
Sbjct: 260 VKDLVSRFLVVQPQKRYTAEEA 281

>pdb|2W0J|A Chain A, Crystal Structure Of Chk2 In Complex With Nsc 109555, A Specific Inhibitor Length = 323

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 76/167 (45%), Gaps = 20/167 (11%)
Query: 344 LLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQY 403
           L F Q+L  V +L+ +   HRDLK +N+LL   E++    + ITDFG S        +  
Sbjct: 118 LYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCL--IKITDFGHSKI------LGE 169
Query: 404 SSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQ---- 458
           +S    L G    +APEV ++         Y+++ D W+ G + +       PF +    
Sbjct: 170 TSLMRTLCGTPTYLAPEVLVSV----GTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQ 225
Query: 459 ---SARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA 502
                + T  + N +P++   V E    LV KLL  DP  R + E A
Sbjct: 226 VSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEA 272

>pdb|3I6W|A Chain A, Structure And Activation Mechanism Of The Chk2 Dna-Damage Checkpoint Kinase Length = 443

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 78/169 (46%), Gaps = 24/169 (14%)
Query: 344 LLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQY 403
           L F Q+L  V +L+ +   HRDLK +N+LL   E++    + ITDFG S        +  
Sbjct: 257 LYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCL--IKITDFGHSKI------LGE 308
Query: 404 SSADIELGGNVALMAPE--VALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQ-- 458
           +S    L G    +APE  V++ T G      Y+++ D W+ G + +       PF +  
Sbjct: 309 TSLMRTLCGTPTYLAPEVLVSVGTAG------YNRAVDCWSLGVILFICLSGYPPFSEHR 362
Query: 459 -----SARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA 502
                  + T  + N +P++   V E    LV KLL  DP  R + E A
Sbjct: 363 TQVSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEA 411

>pdb|2XK9|A Chain A, Structural Analysis Of Checkpoint Kinase 2 (Chk2) In Complex With Inhibitor Pv1533 Length = 322

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 76/167 (45%), Gaps = 20/167 (11%)
Query: 344 LLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQY 403
           L F Q+L  V +L+ +   HRDLK +N+LL   E++    + ITDFG S        +  
Sbjct: 117 LYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCL--IKITDFGHSKI------LGE 168
Query: 404 SSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQ---- 458
           +S    L G    +APEV ++         Y+++ D W+ G + +       PF +    
Sbjct: 169 TSLMRTLCGTPTYLAPEVLVSV----GTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQ 224
Query: 459 ---SARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA 502
                + T  + N +P++   V E    LV KLL  DP  R + E A
Sbjct: 225 VSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEA 271

>pdb|2YFX|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase In Complex With Crizotinib Length = 327

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 94/206 (45%), Gaps = 36/206 (17%)
Query: 311 RNMSLFILMK-KYNTDLRNYLRE------RCAQLSMHERVLLFTQLLEGVTHLNMHRTAH 363
           +++  FILM+     DL+++LRE      + + L+M + + +   +  G  +L  +   H
Sbjct: 104 QSLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIH 163
Query: 364 RDLKSDNILLDCSEDNTCPQLVITDFG-------SSYTNKSGLSMQYSSADIELGGNVAL 416
           RD+ + N LL C       +  I DFG       +SY  K G +M            V  
Sbjct: 164 RDIAARNCLLTCPGPGRVAK--IGDFGMARDIYRASYYRKGGCAML----------PVKW 211
Query: 417 MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLN 474
           M PE  +   G+F+    SK+D W+ G + +EIF      Y S  N +    V +  +++
Sbjct: 212 MPPEAFME--GIFT----SKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMD 265
Query: 475 --TNVPEVMRRLVAKLLENDPSDRPS 498
              N P  + R++ +  ++ P DRP+
Sbjct: 266 PPKNCPGPVYRIMTQCWQHQPEDRPN 291

>pdb|3ZUT|A Chain A, The Structure Of Ost1 (D160a) Kinase Length = 362

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 76/172 (44%), Gaps = 22/172 (12%)
Query: 335 AQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYT 394
            + S  E    F QL+ GV++ +  +  HRDLK +N LLD S     P+L I  FG  Y+
Sbjct: 110 GRFSEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGS---PAPRLKICAFG--YS 164
Query: 395 NKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDN 454
             S L  Q  S      G  A +APEV L         +   +D W+ G   Y +     
Sbjct: 165 KSSVLHSQPKST----VGTPAYIAPEVLLKKE-----YDGKVADVWSCGVTLYVMLVGAY 215
Query: 455 PFY--QSARNTDYEVNALPQLNTNVPEVM------RRLVAKLLENDPSDRPS 498
           PF   +  +N    ++ +  +   +P+ +      R L++++   DP+ R S
Sbjct: 216 PFEDPEEPKNFRKTIHRILNVQYAIPDYVHISPECRHLISRIFVADPAKRIS 267

>pdb|2YHV|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase Length = 342

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 94/206 (45%), Gaps = 36/206 (17%)
Query: 311 RNMSLFILMK-KYNTDLRNYLRE------RCAQLSMHERVLLFTQLLEGVTHLNMHRTAH 363
           +++  FILM+     DL+++LRE      + + L+M + + +   +  G  +L  +   H
Sbjct: 119 QSLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIH 178
Query: 364 RDLKSDNILLDCSEDNTCPQLVITDFG-------SSYTNKSGLSMQYSSADIELGGNVAL 416
           RD+ + N LL C       +  I DFG       +SY  K G +M            V  
Sbjct: 179 RDIAARNCLLTCPGPGRVAK--IGDFGMARDIYRASYYRKGGCAML----------PVKW 226
Query: 417 MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLN 474
           M PE  +   G+F+    SK+D W+ G + +EIF      Y S  N +    V +  +++
Sbjct: 227 MPPEAFME--GIFT----SKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMD 280
Query: 475 --TNVPEVMRRLVAKLLENDPSDRPS 498
              N P  + R++ +  ++ P DRP+
Sbjct: 281 PPKNCPGPVYRIMTQCWQHQPEDRPN 306

>pdb|2YCR|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With Inhibitor Pv976 Length = 323

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 76/167 (45%), Gaps = 20/167 (11%)
Query: 344 LLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQY 403
           L F Q+L  V +L+ +   HRDLK +N+LL   E++    + ITDFG S        +  
Sbjct: 118 LYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCL--IKITDFGHSKI------LGE 169
Query: 404 SSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQ---- 458
           +S    L G    +APEV ++         Y+++ D W+ G + +       PF +    
Sbjct: 170 TSLMRTLCGTPTYLAPEVLVSV----GTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQ 225
Query: 459 ---SARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA 502
                + T  + N +P++   V E    LV KLL  DP  R + E A
Sbjct: 226 VSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEA 272

>pdb|3I6U|A Chain A, Structure And Activation Mechanism Of The Chk2 Dna-Damage Checkpoint Kinase Length = 419

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 78/169 (46%), Gaps = 24/169 (14%)
Query: 344 LLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQY 403
           L F Q+L  V +L+ +   HRDLK +N+LL   E++    + ITDFG S        +  
Sbjct: 243 LYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCL--IKITDFGHSKI------LGE 294
Query: 404 SSADIELGGNVALMAPE--VALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQ-- 458
           +S    L G    +APE  V++ T G      Y+++ D W+ G + +       PF +  
Sbjct: 295 TSLMRTLCGTPTYLAPEVLVSVGTAG------YNRAVDCWSLGVILFICLSGYPPFSEHR 348
Query: 459 -----SARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA 502
                  + T  + N +P++   V E    LV KLL  DP  R + E A
Sbjct: 349 TQVSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEA 397

>pdb|2JKK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With Bis- Anilino Pyrimidine Inhibitor Length = 276

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 79/187 (42%), Gaps = 22/187 (11%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           +LR++L+ R   L +   +L   QL   + +L   R  HRD+ + N+L+  ++   C +L
Sbjct: 96  ELRSFLQVRKFSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSATD---CVKL 152
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY-SKSDAWTAG 443
              DFG S   +     + S   +     +  MAPE         +F  + S SD W  G
Sbjct: 153 --GDFGLSRYMEDSTYYKASKGKLP----IKWMAPES-------INFRRFTSASDVWMFG 199
Query: 444 TVAYEIFGHDNPFYQSARNTDY----EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS- 498
              +EI  H    +Q  +N D     E      +  N P  +  L+ K    DPS RP  
Sbjct: 200 VCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRF 259
Query: 499 AELAATV 505
            EL A +
Sbjct: 260 TELKAQL 266

>pdb|3MFR|A Chain A, Cask-4m Cam Kinase Domain, Native Length = 351

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 77/160 (48%), Gaps = 30/160 (18%)
Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
           Q+LE + + + +   HRD+K +N+LL  S++N+ P + + DF        G+++Q   + 
Sbjct: 138 QILEALRYCHDNNIIHRDVKPENVLL-ASKENSAP-VKLGDF--------GVAIQLGESG 187
Query: 408 IELGGNVA---LMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSAR-- 461
           +  GG V     MAPEV    P       Y K  D W  G + + +     PFY +    
Sbjct: 188 LVAGGRVGTPHFMAPEVVKREP-------YGKPVDVWGCGVILFILLSGCLPFYGTKERL 240
Query: 462 -----NTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDR 496
                   Y++N  P+  +++ E  + LV ++L  DP++R
Sbjct: 241 FEGIIKGKYKMN--PRQWSHISESAKDLVRRMLMLDPAER 278

>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300 Length = 280

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 20/154 (12%)
Query: 346 FTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSS 405
            T+L   +++ +  R  HRD+K +N+LL      +  +L I DFG S           SS
Sbjct: 114 ITELANALSYCHSKRVIHRDIKPENLLL-----GSAGELKIADFGWSVHAP-------SS 161
Query: 406 ADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY 465
              EL G +  + PE+      +   ++  K D W+ G + YE      PF  +     Y
Sbjct: 162 RRTELCGTLDYLPPEM------IEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETY 215
Query: 466 EVNALPQLN--TNVPEVMRRLVAKLLENDPSDRP 497
           +  +  +      V E  R L+++LL+++PS RP
Sbjct: 216 KRISRVEFTFPDFVTEGARDLISRLLKHNPSQRP 249

>pdb|2J0J|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase Containing The Ferm And Kinase Domains Length = 656

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 78/187 (41%), Gaps = 22/187 (11%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           +LR++L+ R   L +   +L   QL   + +L   R  HRD+ + N+L+     N C +L
Sbjct: 476 ELRSFLQVRKFSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVS---SNDCVKL 532
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY-SKSDAWTAG 443
              DFG S   +     + S   +     +  MAPE         +F  + S SD W  G
Sbjct: 533 --GDFGLSRYMEDSTYYKASKGKLP----IKWMAPES-------INFRRFTSASDVWMFG 579
Query: 444 TVAYEIFGHDNPFYQSARNTDY----EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS- 498
              +EI  H    +Q  +N D     E      +  N P  +  L+ K    DPS RP  
Sbjct: 580 VCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRF 639
Query: 499 AELAATV 505
            EL A +
Sbjct: 640 TELKAQL 646

>pdb|2V7O|A Chain A, Crystal Structure Of Human Calcium-Calmodulin-Dependent Protein Kinase Ii Gamma Length = 336

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 80/193 (41%), Gaps = 35/193 (18%)
Query: 327 RNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVI 386
           R Y  E  A   +H       Q+LE V H++ H   HRDLK +N+LL         +L  
Sbjct: 124 REYYSEADASHCIH-------QILESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKL-- 174
Query: 387 TDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTV 445
            DFG +   +      +  A     G    ++PEV    P       Y K  D W  G +
Sbjct: 175 ADFGLAIEVQGEQQAWFGFA-----GTPGYLSPEVLRKDP-------YGKPVDIWACGVI 222
Query: 446 AYEIFGHDNPF--------YQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRP 497
            Y +     PF        YQ  +   Y+  + P+ +T  PE  + L+ ++L  +P+ R 
Sbjct: 223 LYILLVGYPPFWDEDQHKLYQQIKAGAYDFPS-PEWDTVTPEA-KNLINQMLTINPAKRI 280
Query: 498 SAELAAT---VCQ 507
           +A+ A     VCQ
Sbjct: 281 TADQALKHPWVCQ 293

>pdb|1WMK|A Chain A, Human Death-Associated Kinase Drp-1, Mutant S308d D40 Length = 321

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 72/162 (44%), Gaps = 25/162 (15%)
Query: 337 LSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNK 396
           LS  E      Q+L+GV +L+  + AH DLK +NI+L   ++   P + + DFG ++  +
Sbjct: 112 LSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIML-LDKNIPIPHIKLIDFGLAHEIE 170
Query: 397 SGLSMQYSSADIELGGNVALMAPEVALATP-GLFSFVNYSKSDAWTAGTVAYEIFGHDNP 455
            G+  +       + G    +APE+    P GL       ++D W+ G + Y +    +P
Sbjct: 171 DGVEFK------NIFGTPEFVAPEIVNYEPLGL-------EADMWSIGVITYILLSGASP 217
Query: 456 FYQSARNT----------DYEVNALPQLNTNVPEVMRRLVAK 487
           F    +            D++     Q +    + +R+L+ K
Sbjct: 218 FLGDTKQETLANITAVSYDFDEEFFSQTSELAKDFIRKLLVK 259

>pdb|2XB7|A Chain A, Structure Of Human Anaplastic Lymphoma Kinase In Complex With Nvp- Tae684 Length = 315

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 94/206 (45%), Gaps = 36/206 (17%)
Query: 311 RNMSLFILMK-KYNTDLRNYLRE------RCAQLSMHERVLLFTQLLEGVTHLNMHRTAH 363
           +++  FIL++     DL+++LRE      + + L+M + + +   +  G  +L  +   H
Sbjct: 96  QSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIH 155
Query: 364 RDLKSDNILLDCSEDNTCPQLVITDFG-------SSYTNKSGLSMQYSSADIELGGNVAL 416
           RD+ + N LL C       +  I DFG       +SY  K G +M            V  
Sbjct: 156 RDIAARNCLLTCPGPGRVAK--IGDFGMARDIYRASYYRKGGCAML----------PVKW 203
Query: 417 MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLN 474
           M PE  +   G+F+    SK+D W+ G + +EIF      Y S  N +    V +  +++
Sbjct: 204 MPPEAFME--GIFT----SKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMD 257
Query: 475 --TNVPEVMRRLVAKLLENDPSDRPS 498
              N P  + R++ +  ++ P DRP+
Sbjct: 258 PPKNCPGPVYRIMTQCWQHQPEDRPN 283

>pdb|2A27|A Chain A, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form With 8 Monomers In The Asymmetric Unit Length = 321

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 72/162 (44%), Gaps = 25/162 (15%)
Query: 337 LSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNK 396
           LS  E      Q+L+GV +L+  + AH DLK +NI+L   ++   P + + DFG ++  +
Sbjct: 112 LSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIML-LDKNIPIPHIKLIDFGLAHEIE 170
Query: 397 SGLSMQYSSADIELGGNVALMAPEVALATP-GLFSFVNYSKSDAWTAGTVAYEIFGHDNP 455
            G+  +       + G    +APE+    P GL       ++D W+ G + Y +    +P
Sbjct: 171 DGVEFK------NIFGTPEFVAPEIVNYEPLGL-------EADMWSIGVITYILLSGASP 217
Query: 456 FYQSARNT----------DYEVNALPQLNTNVPEVMRRLVAK 487
           F    +            D++     Q +    + +R+L+ K
Sbjct: 218 FLGDTKQETLANITAVSYDFDEEFFSQTSELAKDFIRKLLVK 259

>pdb|2YJS|A Chain A, Structure Of C1156y Mutant Anaplastic Lymphoma Kinase Length = 342

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 94/206 (45%), Gaps = 36/206 (17%)
Query: 311 RNMSLFILMK-KYNTDLRNYLRE------RCAQLSMHERVLLFTQLLEGVTHLNMHRTAH 363
           +++  FIL++     DL+++LRE      + + L+M + + +   +  G  +L  +   H
Sbjct: 119 QSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIH 178
Query: 364 RDLKSDNILLDCSEDNTCPQLVITDFG-------SSYTNKSGLSMQYSSADIELGGNVAL 416
           RD+ + N LL C       +  I DFG       +SY  K G +M            V  
Sbjct: 179 RDIAARNCLLTCPGPGRVAK--IGDFGMARDIYRASYYRKGGCAML----------PVKW 226
Query: 417 MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLN 474
           M PE  +   G+F+    SK+D W+ G + +EIF      Y S  N +    V +  +++
Sbjct: 227 MPPEAFME--GIFT----SKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMD 280
Query: 475 --TNVPEVMRRLVAKLLENDPSDRPS 498
              N P  + R++ +  ++ P DRP+
Sbjct: 281 PPKNCPGPVYRIMTQCWQHQPEDRPN 306

>pdb|2XP2|A Chain A, Structure Of The Human Anaplastic Lymphoma Kinase In Complex With Crizotinib (Pf-02341066) Length = 327

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 94/206 (45%), Gaps = 36/206 (17%)
Query: 311 RNMSLFILMK-KYNTDLRNYLRE------RCAQLSMHERVLLFTQLLEGVTHLNMHRTAH 363
           +++  FIL++     DL+++LRE      + + L+M + + +   +  G  +L  +   H
Sbjct: 104 QSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIH 163
Query: 364 RDLKSDNILLDCSEDNTCPQLVITDFG-------SSYTNKSGLSMQYSSADIELGGNVAL 416
           RD+ + N LL C       +  I DFG       +SY  K G +M            V  
Sbjct: 164 RDIAARNCLLTCPGPGRVAK--IGDFGMARDIYRASYYRKGGCAML----------PVKW 211
Query: 417 MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLN 474
           M PE  +   G+F+    SK+D W+ G + +EIF      Y S  N +    V +  +++
Sbjct: 212 MPPEAFME--GIFT----SKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMD 265
Query: 475 --TNVPEVMRRLVAKLLENDPSDRPS 498
              N P  + R++ +  ++ P DRP+
Sbjct: 266 PPKNCPGPVYRIMTQCWQHQPEDRPN 291

>pdb|3ZUU|A Chain A, The Structure Of Ost1 (D160a, S175d) Kinase In Complex With Gold Length = 362

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 76/172 (44%), Gaps = 22/172 (12%)
Query: 335 AQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYT 394
            + S  E    F QL+ GV++ +  +  HRDLK +N LLD S     P+L I  FG  Y+
Sbjct: 110 GRFSEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGS---PAPRLKICAFG--YS 164
Query: 395 NKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDN 454
             S L  Q      +  G  A +APEV L         +   +D W+ G   Y +     
Sbjct: 165 KSSVLHSQPK----DTVGTPAYIAPEVLLKKE-----YDGKVADVWSCGVTLYVMLVGAY 215
Query: 455 PFY--QSARNTDYEVNALPQLNTNVPEVM------RRLVAKLLENDPSDRPS 498
           PF   +  +N    ++ +  +   +P+ +      R L++++   DP+ R S
Sbjct: 216 PFEDPEEPKNFRKTIHRILNVQYAIPDYVHISPECRHLISRIFVADPAKRIS 267

>pdb|2YJR|A Chain A, Structure Of F1174l Mutant Anaplastic Lymphoma Kinase Length = 342

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 94/206 (45%), Gaps = 36/206 (17%)
Query: 311 RNMSLFILMK-KYNTDLRNYLRE------RCAQLSMHERVLLFTQLLEGVTHLNMHRTAH 363
           +++  FIL++     DL+++LRE      + + L+M + + +   +  G  +L  +   H
Sbjct: 119 QSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIH 178
Query: 364 RDLKSDNILLDCSEDNTCPQLVITDFG-------SSYTNKSGLSMQYSSADIELGGNVAL 416
           RD+ + N LL C       +  I DFG       +SY  K G +M            V  
Sbjct: 179 RDIAARNCLLTCPGPGRVAK--IGDFGMARDIYRASYYRKGGCAML----------PVKW 226
Query: 417 MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLN 474
           M PE  +   G+F+    SK+D W+ G + +EIF      Y S  N +    V +  +++
Sbjct: 227 MPPEAFME--GIFT----SKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMD 280
Query: 475 --TNVPEVMRRLVAKLLENDPSDRPS 498
              N P  + R++ +  ++ P DRP+
Sbjct: 281 PPKNCPGPVYRIMTQCWQHQPEDRPN 306

>pdb|4FNX|A Chain A, Crystal Structure Of The Apo R1275q Anaplastic Lymphoma Kinase Catalytic Domain Length = 327

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 94/206 (45%), Gaps = 36/206 (17%)
Query: 311 RNMSLFILMK-KYNTDLRNYLRE------RCAQLSMHERVLLFTQLLEGVTHLNMHRTAH 363
           +++  FIL++     DL+++LRE      + + L+M + + +   +  G  +L  +   H
Sbjct: 105 QSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIH 164
Query: 364 RDLKSDNILLDCSEDNTCPQLVITDFG-------SSYTNKSGLSMQYSSADIELGGNVAL 416
           RD+ + N LL C       +  I DFG       +SY  K G +M            V  
Sbjct: 165 RDIAARNCLLTCPGPGRVAK--IGDFGMAQDIYRASYYRKGGCAML----------PVKW 212
Query: 417 MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLN 474
           M PE  +   G+F+    SK+D W+ G + +EIF      Y S  N +    V +  +++
Sbjct: 213 MPPEAFME--GIFT----SKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMD 266
Query: 475 --TNVPEVMRRLVAKLLENDPSDRPS 498
              N P  + R++ +  ++ P DRP+
Sbjct: 267 PPKNCPGPVYRIMTQCWQHQPEDRPN 292

>pdb|4FNZ|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In Complex With Piperidine-Carboxamide Inhibitor 2 Length = 327

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 94/206 (45%), Gaps = 36/206 (17%)
Query: 311 RNMSLFILMK-KYNTDLRNYLRE------RCAQLSMHERVLLFTQLLEGVTHLNMHRTAH 363
           +++  FIL++     DL+++LRE      + + L+M + + +   +  G  +L  +   H
Sbjct: 105 QSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIH 164
Query: 364 RDLKSDNILLDCSEDNTCPQLVITDFG-------SSYTNKSGLSMQYSSADIELGGNVAL 416
           RD+ + N LL C       +  I DFG       +SY  K G +M            V  
Sbjct: 165 RDIAARNCLLTCPGPGRVAK--IGDFGMARDIYRASYYRKGGCAML----------PVKW 212
Query: 417 MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLN 474
           M PE  +   G+F+    SK+D W+ G + +EIF      Y S  N +    V +  +++
Sbjct: 213 MPPEAFME--GIFT----SKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMD 266
Query: 475 --TNVPEVMRRLVAKLLENDPSDRPS 498
              N P  + R++ +  ++ P DRP+
Sbjct: 267 PPKNCPGPVYRIMTQCWQHQPEDRPN 292

>pdb|4DCE|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In Complex With A Piperidine-Carboxamide Inhibitor Length = 333

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 94/206 (45%), Gaps = 36/206 (17%)
Query: 311 RNMSLFILMK-KYNTDLRNYLRE------RCAQLSMHERVLLFTQLLEGVTHLNMHRTAH 363
           +++  FIL++     DL+++LRE      + + L+M + + +   +  G  +L  +   H
Sbjct: 111 QSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIH 170
Query: 364 RDLKSDNILLDCSEDNTCPQLVITDFG-------SSYTNKSGLSMQYSSADIELGGNVAL 416
           RD+ + N LL C       +  I DFG       +SY  K G +M            V  
Sbjct: 171 RDIAARNCLLTCPGPGRVAK--IGDFGMARDIYRASYYRKGGCAML----------PVKW 218
Query: 417 MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLN 474
           M PE  +   G+F+    SK+D W+ G + +EIF      Y S  N +    V +  +++
Sbjct: 219 MPPEAFME--GIFT----SKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMD 272
Query: 475 --TNVPEVMRRLVAKLLENDPSDRPS 498
              N P  + R++ +  ++ P DRP+
Sbjct: 273 PPKNCPGPVYRIMTQCWQHQPEDRPN 298

>pdb|4FNW|A Chain A, Crystal Structure Of The Apo F1174l Anaplastic Lymphoma Kinase Catalytic Domain Length = 327

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 94/206 (45%), Gaps = 36/206 (17%)
Query: 311 RNMSLFILMK-KYNTDLRNYLRE------RCAQLSMHERVLLFTQLLEGVTHLNMHRTAH 363
           +++  FIL++     DL+++LRE      + + L+M + + +   +  G  +L  +   H
Sbjct: 105 QSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIH 164
Query: 364 RDLKSDNILLDCSEDNTCPQLVITDFG-------SSYTNKSGLSMQYSSADIELGGNVAL 416
           RD+ + N LL C       +  I DFG       +SY  K G +M            V  
Sbjct: 165 RDIAARNCLLTCPGPGRVAK--IGDFGMARDIYRASYYRKGGCAML----------PVKW 212
Query: 417 MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLN 474
           M PE  +   G+F+    SK+D W+ G + +EIF      Y S  N +    V +  +++
Sbjct: 213 MPPEAFME--GIFT----SKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMD 266
Query: 475 --TNVPEVMRRLVAKLLENDPSDRPS 498
              N P  + R++ +  ++ P DRP+
Sbjct: 267 PPKNCPGPVYRIMTQCWQHQPEDRPN 292

>pdb|3AOX|A Chain A, X-Ray Crystal Structure Of Human Anaplastic Lymphoma Kinase In Complex With Ch5424802 Length = 344

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 94/206 (45%), Gaps = 36/206 (17%)
Query: 311 RNMSLFILMK-KYNTDLRNYLRE------RCAQLSMHERVLLFTQLLEGVTHLNMHRTAH 363
           +++  FIL++     DL+++LRE      + + L+M + + +   +  G  +L  +   H
Sbjct: 121 QSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIH 180
Query: 364 RDLKSDNILLDCSEDNTCPQLVITDFG-------SSYTNKSGLSMQYSSADIELGGNVAL 416
           RD+ + N LL C       +  I DFG       +SY  K G +M            V  
Sbjct: 181 RDIAARNCLLTCPGPGRVAK--IGDFGMARDIYRASYYRKGGCAML----------PVKW 228
Query: 417 MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLN 474
           M PE  +   G+F+    SK+D W+ G + +EIF      Y S  N +    V +  +++
Sbjct: 229 MPPEAFME--GIFT----SKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMD 282
Query: 475 --TNVPEVMRRLVAKLLENDPSDRPS 498
              N P  + R++ +  ++ P DRP+
Sbjct: 283 PPKNCPGPVYRIMTQCWQHQPEDRPN 308

>pdb|2J0K|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase Containing The Ferm And Kinase Domains. Length = 656

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 79/187 (42%), Gaps = 22/187 (11%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           +LR++L+ R   L +   +L   QL   + +L   R  HRD+ + N+L+  ++   C +L
Sbjct: 476 ELRSFLQVRKFSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSATD---CVKL 532
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY-SKSDAWTAG 443
              DFG S   +     + S   +     +  MAPE         +F  + S SD W  G
Sbjct: 533 --GDFGLSRYMEDSTYYKASKGKLP----IKWMAPES-------INFRRFTSASDVWMFG 579
Query: 444 TVAYEIFGHDNPFYQSARNTDY----EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS- 498
              +EI  H    +Q  +N D     E      +  N P  +  L+ K    DPS RP  
Sbjct: 580 VCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRF 639
Query: 499 AELAATV 505
            EL A +
Sbjct: 640 TELKAQL 646

>pdb|2YA9|A Chain A, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2 Length = 361

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 72/162 (44%), Gaps = 25/162 (15%)
Query: 337 LSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNK 396
           LS  E      Q+L+GV +L+  + AH DLK +NI+L   ++   P + + DFG ++  +
Sbjct: 112 LSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIML-LDKNIPIPHIKLIDFGLAHEIE 170
Query: 397 SGLSMQYSSADIELGGNVALMAPEVALATP-GLFSFVNYSKSDAWTAGTVAYEIFGHDNP 455
            G+  +       + G    +APE+    P GL       ++D W+ G + Y +    +P
Sbjct: 171 DGVEFK------NIFGTPEFVAPEIVNYEPLGL-------EADMWSIGVITYILLSGASP 217
Query: 456 FYQSARNT----------DYEVNALPQLNTNVPEVMRRLVAK 487
           F    +            D++     Q +    + +R+L+ K
Sbjct: 218 FLGDTKQETLANITAVSYDFDEEFFSQTSELAKDFIRKLLVK 259

>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol Length = 315

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 74/162 (45%), Gaps = 28/162 (17%)
Query: 348 QLLEGVTHLN-MHRTA--HRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYS 404
           Q  +GV +L+ M   A  HRDLK  N+LL          L I DFG++   ++ ++    
Sbjct: 111 QCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGT----VLKICDFGTACDIQTHMTNNKG 166
Query: 405 SADIELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQ---SA 460
           SA        A MAPEV       F   NYS K D ++ G + +E+     PF +    A
Sbjct: 167 SA--------AWMAPEV-------FEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPA 211
Query: 461 RNTDYEVN--ALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
               + V+    P L  N+P+ +  L+ +    DPS RPS E
Sbjct: 212 FRIMWAVHNGTRPPLIKNLPKPIESLMTRCWSKDPSQRPSME 253

>pdb|1ZWS|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Drp-1 Kinase Length = 288

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 85/185 (45%), Gaps = 22/185 (11%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           +L ++L ++ + LS  E      Q+L+GV +L+  + AH DLK +NI+L   ++   P +
Sbjct: 101 ELFDFLAQKES-LSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIML-LDKNIPIPHI 158
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP-GLFSFVNYSKSDAWTAG 443
            + DFG ++  + G+  +       + G    +APE+    P GL       ++D W+ G
Sbjct: 159 KLIDFGLAHEIEDGVEFK------NIFGTPEFVAPEIVNYEPLGL-------EADMWSIG 205
Query: 444 TVAYEIFGHDNPFYQSARN------TDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRP 497
            + Y +    +PF    +       T    +   +  ++  E+ +  + KLL  +   R 
Sbjct: 206 VITYILLSGASPFLGDTKQETLANITSVSYDFDEEFFSHTSELAKDFIRKLLVKETRKRL 265
Query: 498 SAELA 502
           + + A
Sbjct: 266 TIQEA 270

>pdb|2A2A|A Chain A, High-resolution Crystallographic Analysis Of The Autoinhibited Conformation Of A Human Death-associated Protein Kinase Length = 321

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 77/173 (44%), Gaps = 21/173 (12%)
Query: 337 LSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNK 396
           LS  E      Q+L+GV +L+  + AH DLK +NI+L   ++   P + + DFG ++  +
Sbjct: 112 LSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIML-LDKNIPIPHIKLIDFGLAHEIE 170
Query: 397 SGLSMQYSSADIELGGNVALMAPEVALATP-GLFSFVNYSKSDAWTAGTVAYEIFGHDNP 455
            G+  +       + G    +APE+    P GL       ++D W+ G + Y +    +P
Sbjct: 171 DGVEFK------NIFGTPEFVAPEIVNYEPLGL-------EADMWSIGVITYILLSGASP 217
Query: 456 FYQSARN------TDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA 502
           F    +       T    +   +  ++  E+ +  + KLL  +   R + + A
Sbjct: 218 FLGDTKQETLANITSVSYDFDEEFFSHTSELAKDFIRKLLVKETRKRLTIQEA 270

>pdb|4FOB|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In Complex With Acyliminobenzimidazole Inhibitor 1 Length = 353

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 94/206 (45%), Gaps = 36/206 (17%)
Query: 311 RNMSLFILMK-KYNTDLRNYLRE------RCAQLSMHERVLLFTQLLEGVTHLNMHRTAH 363
           +++  FIL++     DL+++LRE      + + L+M + + +   +  G  +L  +   H
Sbjct: 131 QSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIH 190
Query: 364 RDLKSDNILLDCSEDNTCPQLVITDFG-------SSYTNKSGLSMQYSSADIELGGNVAL 416
           RD+ + N LL C       +  I DFG       +SY  K G +M            V  
Sbjct: 191 RDIAARNCLLTCPGPGRVAK--IGDFGMARDIYRASYYRKGGCAML----------PVKW 238
Query: 417 MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLN 474
           M PE  +   G+F+    SK+D W+ G + +EIF      Y S  N +    V +  +++
Sbjct: 239 MPPEAFME--GIFT----SKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMD 292
Query: 475 --TNVPEVMRRLVAKLLENDPSDRPS 498
              N P  + R++ +  ++ P DRP+
Sbjct: 293 PPKNCPGPVYRIMTQCWQHQPEDRPN 318

>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A Gsk3beta Inhibitor Length = 287

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 70/154 (45%), Gaps = 20/154 (12%)
Query: 346 FTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSS 405
            T+L   +++ +  R  HRD+K +N+LL      +  +L I DFG S           SS
Sbjct: 114 ITELANALSYCHSKRVIHRDIKPENLLL-----GSAGELKIADFGWSVHAP-------SS 161
Query: 406 ADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY 465
              +L G +  + PE+      +   ++  K D W+ G + YE      PF  +     Y
Sbjct: 162 RRTDLCGTLDYLPPEM------IEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETY 215
Query: 466 EVNALPQLN--TNVPEVMRRLVAKLLENDPSDRP 497
           +  +  +      V E  R L+++LL+++PS RP
Sbjct: 216 KRISRVEFTFPDFVTEGARDLISRLLKHNPSQRP 249

>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A Inhibitors: Structure Basis For Potency And Specificity Length = 279

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 70/153 (45%), Gaps = 20/153 (13%)
Query: 347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSA 406
           T+L   +++ +  R  HRD+K +N+LL      +  +L I DFG S           SS 
Sbjct: 116 TELANALSYCHSKRVIHRDIKPENLLL-----GSAGELKIADFGWSVHAP-------SSR 163
Query: 407 DIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE 466
             +L G +  + PE+      +   ++  K D W+ G + YE      PF  +     Y+
Sbjct: 164 RTDLCGTLDYLPPEM------IEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYK 217
Query: 467 VNALPQLN--TNVPEVMRRLVAKLLENDPSDRP 497
             +  +      V E  R L+++LL+++PS RP
Sbjct: 218 RISRVEFTFPDFVTEGARDLISRLLKHNPSQRP 250

>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With Its Activating Protein Tab1 Length = 307

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 74/162 (45%), Gaps = 28/162 (17%)
Query: 348 QLLEGVTHLN-MHRTA--HRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYS 404
           Q  +GV +L+ M   A  HRDLK  N+LL          L I DFG++   ++ ++    
Sbjct: 110 QCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGT----VLKICDFGTACDIQTHMTNNKG 165
Query: 405 SADIELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQ---SA 460
           SA        A MAPEV       F   NYS K D ++ G + +E+     PF +    A
Sbjct: 166 SA--------AWMAPEV-------FEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPA 210
Query: 461 RNTDYEVN--ALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
               + V+    P L  N+P+ +  L+ +    DPS RPS E
Sbjct: 211 FRIMWAVHNGTRPPLIKNLPKPIESLMTRCWSKDPSQRPSME 252

>pdb|1Z9X|A Chain A, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form With 3 Monomers In The Asymmetric Unit Length = 321

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 77/173 (44%), Gaps = 21/173 (12%)
Query: 337 LSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNK 396
           LS  E      Q+L+GV +L+  + AH DLK +NI+L   ++   P + + DFG ++  +
Sbjct: 112 LSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIML-LDKNIPIPHIKLIDFGLAHEIE 170
Query: 397 SGLSMQYSSADIELGGNVALMAPEVALATP-GLFSFVNYSKSDAWTAGTVAYEIFGHDNP 455
            G+  +       + G    +APE+    P GL       ++D W+ G + Y +    +P
Sbjct: 171 DGVEFK------NIFGTPEFVAPEIVNYEPLGL-------EADMWSIGVITYILLSGASP 217
Query: 456 FYQSARN------TDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA 502
           F    +       T    +   +  ++  E+ +  + KLL  +   R + + A
Sbjct: 218 FLGDTKQETLANITSVSYDFDEEFFSHTSELAKDFIRKLLVKETRKRLTIQEA 270

>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A 5-Aminopyrimidinyl Quinazoline Inhibitor Length = 283

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 70/154 (45%), Gaps = 20/154 (12%)
Query: 346 FTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSS 405
            T+L   +++ +  R  HRD+K +N+LL      +  +L I DFG S           SS
Sbjct: 119 ITELANALSYCHSKRVIHRDIKPENLLL-----GSAGELKIADFGWSVHAP-------SS 166
Query: 406 ADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY 465
              +L G +  + PE+      +   ++  K D W+ G + YE      PF  +     Y
Sbjct: 167 RRTDLCGTLDYLPPEM------IEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETY 220
Query: 466 EVNALPQLN--TNVPEVMRRLVAKLLENDPSDRP 497
           +  +  +      V E  R L+++LL+++PS RP
Sbjct: 221 KRISRVEFTFPDFVTEGARDLISRLLKHNPSQRP 254

>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With Adpnp Length = 275

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 70/153 (45%), Gaps = 20/153 (13%)
Query: 347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSA 406
           T+L   +++ +  R  HRD+K +N+LL      +  +L I DFG S           SS 
Sbjct: 115 TELANALSYCHSKRVIHRDIKPENLLL-----GSAGELKIADFGWSVHAP-------SSR 162
Query: 407 DIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE 466
             +L G +  + PE+      +   ++  K D W+ G + YE      PF  +     Y+
Sbjct: 163 RTDLCGTLDYLPPEM------IEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYK 216
Query: 467 VNALPQLN--TNVPEVMRRLVAKLLENDPSDRP 497
             +  +      V E  R L+++LL+++PS RP
Sbjct: 217 RISRVEFTFPDFVTEGARDLISRLLKHNPSQRP 249

>pdb|2XUU|A Chain A, Crystal Structure Of A Dap-Kinase 1 Mutant Length = 334

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 30/183 (16%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           +L ++L E+   L+  E      Q+L GV +L+  + AH DLK +NI+L    +   P++
Sbjct: 100 ELFDFLAEK-ESLTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIML-LDRNVPKPRI 157
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP-GLFSFVNYSKSDAWTAG 443
            I DFG ++       + + +    + G  A +APE+    P GL       ++D W+ G
Sbjct: 158 KIIDFGLAH------KIDFGNEFKNIFGTPAFVAPEIVNYEPLGL-------EADMWSIG 204
Query: 444 TVAYEIFGHDNPFYQ----------SARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDP 493
            + Y +    +PF            SA N ++E       +    + +RRL+ K    DP
Sbjct: 205 VITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVK----DP 260
Query: 494 SDR 496
             R
Sbjct: 261 KKR 263

>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of Pyrazolopyridine- Sulfonamides As Potent Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I) Length = 271

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 70/153 (45%), Gaps = 20/153 (13%)
Query: 347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSA 406
           T+L   +++ +  R  HRD+K +N+LL      +  +L I DFG S           SS 
Sbjct: 118 TELANALSYCHSKRVIHRDIKPENLLL-----GSAGELKIADFGWSVHAP-------SSR 165
Query: 407 DIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE 466
             +L G +  + PE+      +   ++  K D W+ G + YE      PF  +     Y+
Sbjct: 166 RDDLCGTLDYLPPEM------IEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYK 219
Query: 467 VNALPQLN--TNVPEVMRRLVAKLLENDPSDRP 497
             +  +      V E  R L+++LL+++PS RP
Sbjct: 220 RISRVEFTFPDFVTEGARDLISRLLKHNPSQRP 252

>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A Diaminopyrimidine Length = 281

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 20/153 (13%)
Query: 347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSA 406
           T+L   +++ +  R  HRD+K +N+LL      +  +L I DFG S           SS 
Sbjct: 116 TELANALSYCHSKRVIHRDIKPENLLL-----GSAGELKIADFGWS-------CHAPSSR 163
Query: 407 DIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE 466
              L G +  + PE+      +   ++  K D W+ G + YE      PF  +     Y+
Sbjct: 164 RTTLSGTLDYLPPEM------IEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYK 217
Query: 467 VNALPQLN--TNVPEVMRRLVAKLLENDPSDRP 497
             +  +      V E  R L+++LL+++PS RP
Sbjct: 218 RISRVEFTFPDFVTEGARDLISRLLKHNPSQRP 250

>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And Tpx2 Length = 268

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 20/153 (13%)
Query: 347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSA 406
           T+L   +++ +  R  HRD+K +N+LL      +  +L I DFG S           SS 
Sbjct: 115 TELANALSYCHSKRVIHRDIKPENLLL-----GSAGELKIADFGWSVHAP-------SSR 162
Query: 407 DIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE 466
              L G +  + PE+      +   ++  K D W+ G + YE      PF  +     Y+
Sbjct: 163 RTXLCGTLDYLPPEM------IEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYK 216
Query: 467 VNALPQLN--TNVPEVMRRLVAKLLENDPSDRP 497
             +  +      V E  R L+++LL+++PS RP
Sbjct: 217 RISRVEFTFPDFVTEGARDLISRLLKHNPSQRP 249

>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And Compound 10 Length = 268

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 20/153 (13%)
Query: 347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSA 406
           T+L   +++ +  R  HRD+K +N+LL      +  +L I DFG S           SS 
Sbjct: 115 TELANALSYCHSKRVIHRDIKPENLLL-----GSAGELKIADFGWSVHAP-------SSR 162
Query: 407 DIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE 466
              L G +  + PE+          ++  K D W+ G + YE      PF  +     Y+
Sbjct: 163 RXXLCGTLDYLPPEMIEGR------MHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYK 216
Query: 467 VNALPQLN--TNVPEVMRRLVAKLLENDPSDRP 497
             +  +      V E  R L+++LL+++PS RP
Sbjct: 217 RISRVEFTFPDFVTEGARDLISRLLKHNPSQRP 249

>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 20/153 (13%)
Query: 347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSA 406
           T+L   +++ +  R  HRD+K +N+LL      +  +L I DFG S           SS 
Sbjct: 118 TELANALSYCHSKRVIHRDIKPENLLL-----GSAGELKIADFGWSVHAP-------SSR 165
Query: 407 DIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE 466
              L G +  + PE+          ++  K D W+ G + YE      PF  +     Y+
Sbjct: 166 RXXLCGTLDYLPPEMIEGR------MHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYK 219
Query: 467 VNALPQLN--TNVPEVMRRLVAKLLENDPSDRP 497
             +  +      V E  R L+++LL+++PS RP
Sbjct: 220 RISRVEFTFPDFVTEGARDLISRLLKHNPSQRP 252

>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase Length = 272

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 20/153 (13%)
Query: 347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSA 406
           T+L   +++ +  R  HRD+K +N+LL      +  +L I DFG S           SS 
Sbjct: 119 TELANALSYCHSKRVIHRDIKPENLLL-----GSAGELKIADFGWSVHAP-------SSR 166
Query: 407 DIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE 466
              L G +  + PE+      +   ++  K D W+ G + YE      PF  +     Y+
Sbjct: 167 RTTLCGTLDYLPPEM------IEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYK 220
Query: 467 VNALPQLN--TNVPEVMRRLVAKLLENDPSDRP 497
             +  +      V E  R L+++LL+++PS RP
Sbjct: 221 RISRVEFTFPDFVTEGARDLISRLLKHNPSQRP 253

>pdb|3LCT|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase Catalytic Domain Length = 344

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 93/206 (45%), Gaps = 36/206 (17%)
Query: 311 RNMSLFILMK-KYNTDLRNYLRE------RCAQLSMHERVLLFTQLLEGVTHLNMHRTAH 363
           +++  FIL++     DL+++LRE      + + L+M + + +   +  G  +L  +   H
Sbjct: 122 QSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIH 181
Query: 364 RDLKSDNILLDCSEDNTCPQLVITDFG-------SSYTNKSGLSMQYSSADIELGGNVAL 416
           RD+ + N LL C       +  I DFG       + Y  K G +M            V  
Sbjct: 182 RDIAARNCLLTCPGPGRVAK--IGDFGMARDIYRAGYYRKGGCAML----------PVKW 229
Query: 417 MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLN 474
           M PE  +   G+F+    SK+D W+ G + +EIF      Y S  N +    V +  +++
Sbjct: 230 MPPEAFME--GIFT----SKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMD 283
Query: 475 --TNVPEVMRRLVAKLLENDPSDRPS 498
              N P  + R++ +  ++ P DRP+
Sbjct: 284 PPKNCPGPVYRIMTQCWQHQPEDRPN 309

>pdb|3L9P|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase Catalytic Domain Length = 367

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 93/206 (45%), Gaps = 36/206 (17%)
Query: 311 RNMSLFILMK-KYNTDLRNYLRE------RCAQLSMHERVLLFTQLLEGVTHLNMHRTAH 363
           +++  FIL++     DL+++LRE      + + L+M + + +   +  G  +L  +   H
Sbjct: 145 QSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIH 204
Query: 364 RDLKSDNILLDCSEDNTCPQLVITDFG-------SSYTNKSGLSMQYSSADIELGGNVAL 416
           RD+ + N LL C       +  I DFG       + Y  K G +M            V  
Sbjct: 205 RDIAARNCLLTCPGPGRVAK--IGDFGMARDIYRAGYYRKGGCAML----------PVKW 252
Query: 417 MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLN 474
           M PE  +   G+F+    SK+D W+ G + +EIF      Y S  N +    V +  +++
Sbjct: 253 MPPEAFME--GIFT----SKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMD 306
Query: 475 --TNVPEVMRRLVAKLLENDPSDRPS 498
              N P  + R++ +  ++ P DRP+
Sbjct: 307 PPKNCPGPVYRIMTQCWQHQPEDRPN 332

>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine Length = 268

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 20/153 (13%)
Query: 347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSA 406
           T+L   +++ +  R  HRD+K +N+LL      +  +L I DFG S           SS 
Sbjct: 115 TELANALSYCHSKRVIHRDIKPENLLL-----GSAGELKIADFGWSVHAP-------SSR 162
Query: 407 DIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE 466
              L G +  + PE+      +   ++  K D W+ G + YE      PF  +     Y+
Sbjct: 163 RAALCGTLDYLPPEM------IEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYK 216
Query: 467 VNALPQLN--TNVPEVMRRLVAKLLENDPSDRP 497
             +  +      V E  R L+++LL+++PS RP
Sbjct: 217 RISRVEFTFPDFVTEGARDLISRLLKHNPSQRP 249

>pdb|2G01|A Chain A, Pyrazoloquinolones As Novel, Selective Jnk1 Inhibitors Length = 370

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 81/194 (41%), Gaps = 44/194 (22%)
Query: 314 SLFILMKKYNTDLRNYLRERCAQLSM---HERV-LLFTQLLEGVTHLNMHRTAHRDLKSD 369
            ++I+M+  + +L       C  + M   HER+  L  Q+L G+ HL+     HRDLK  
Sbjct: 103 DVYIVMELMDANL-------CQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPS 155
Query: 370 NILL--DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVA---LA 424
           NI++  DC+       L I DFG + T                 G   +M PEV      
Sbjct: 156 NIVVKSDCT-------LKILDFGLART----------------AGTSFMMEPEVVTRYYR 192
Query: 425 TPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRR 483
            P +   + Y ++ D W+ G +  E+  H    +      D     + QL T  PE M++
Sbjct: 193 APEVILGMGYKENVDLWSVGCIMGEMVCH-KILFPGRDYIDQWNKVIEQLGTPCPEFMKK 251
Query: 484 L---VAKLLENDPS 494
           L   V   +EN P 
Sbjct: 252 LQPTVRTYVENRPK 265

>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa Length = 267

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 20/153 (13%)
Query: 347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSA 406
           T+L   +++ +  R  HRD+K +N+LL      +  +L I DFG S           SS 
Sbjct: 114 TELANALSYCHSKRVIHRDIKPENLLL-----GSAGELKIADFGWSVHAP-------SSR 161
Query: 407 DIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE 466
              L G +  + PE+      +   ++  K D W+ G + YE      PF  +     Y+
Sbjct: 162 RTTLCGTLDYLPPEM------IEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYK 215
Query: 467 VNALPQLN--TNVPEVMRRLVAKLLENDPSDRP 497
             +  +      V E  R L+++LL+++PS RP
Sbjct: 216 RISRVEFTFPDFVTEGARDLISRLLKHNPSQRP 248

>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant Length = 262

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 20/153 (13%)
Query: 347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSA 406
           T+L   +++ +  R  HRD+K +N+LL      +  +L I DFG S           SS 
Sbjct: 112 TELANALSYCHSKRVIHRDIKPENLLL-----GSAGELKIADFGWSVHAP-------SSR 159
Query: 407 DIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE 466
              L G +  + PE+      +   ++  K D W+ G + YE      PF  +     Y+
Sbjct: 160 RTTLCGTLDYLPPEM------IEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYK 213
Query: 467 VNALPQLN--TNVPEVMRRLVAKLLENDPSDRP 497
             +  +      V E  R L+++LL+++PS RP
Sbjct: 214 RISRVEFTFPDFVTEGARDLISRLLKHNPSQRP 246

>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure Length = 285

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 20/154 (12%)
Query: 346 FTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSS 405
            T+L   +++ +  R  HRD+K +N+LL      +  +L I DFG S           SS
Sbjct: 119 ITELANALSYCHSKRVIHRDIKPENLLL-----GSAGELKIADFGWSVHAP-------SS 166
Query: 406 ADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY 465
               L G +  + PE+      +   ++  K D W+ G + YE      PF  +     Y
Sbjct: 167 RRXXLXGTLDYLPPEM------IEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETY 220
Query: 466 EVNALPQLN--TNVPEVMRRLVAKLLENDPSDRP 497
           +  +  +      V E  R L+++LL+++PS RP
Sbjct: 221 KRISRVEFTFPDFVTEGARDLISRLLKHNPSQRP 254

>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 20/153 (13%)
Query: 347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSA 406
           T+L   +++ +  R  HRD+K +N+LL      +  +L I DFG S           SS 
Sbjct: 118 TELANALSYCHSKRVIHRDIKPENLLL-----GSAGELKIADFGWSVHAP-------SSR 165
Query: 407 DIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE 466
              L G +  + PE+      +   ++  K D W+ G + YE      PF  +     Y+
Sbjct: 166 RTTLCGTLDYLPPEM------IEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYK 219
Query: 467 VNALPQLN--TNVPEVMRRLVAKLLENDPSDRP 497
             +  +      V E  R L+++LL+++PS RP
Sbjct: 220 RISRVEFTFPDFVTEGARDLISRLLKHNPSQRP 252

>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287, Thr288 And Bound To Tpx2 1-43 Length = 282

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 20/153 (13%)
Query: 347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSA 406
           T+L   +++ +  R  HRD+K +N+LL      +  +L I DFG S           SS 
Sbjct: 117 TELANALSYCHSKRVIHRDIKPENLLL-----GSAGELKIADFGWSVHAP-------SSR 164
Query: 407 DIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE 466
              L G +  + PE+      +   ++  K D W+ G + YE      PF  +     Y+
Sbjct: 165 RXXLCGTLDYLPPEM------IEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYK 218
Query: 467 VNALPQLN--TNVPEVMRRLVAKLLENDPSDRP 497
             +  +      V E  R L+++LL+++PS RP
Sbjct: 219 RISRVEFTFPDFVTEGARDLISRLLKHNPSQRP 251

>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358 Length = 280

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 20/154 (12%)
Query: 346 FTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSS 405
            T+L   +++ +  R  HRD+K +N+LL      +  +L I DFG S           SS
Sbjct: 114 ITELANALSYCHSKRVIHRDIKPENLLL-----GSAGELKIADFGWSVHAP-------SS 161
Query: 406 ADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY 465
               L G +  + PE+      +   ++  K D W+ G + YE      PF  +     Y
Sbjct: 162 RRTTLCGTLDYLPPEM------IEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETY 215
Query: 466 EVNALPQLN--TNVPEVMRRLVAKLLENDPSDRP 497
           +  +  +      V E  R L+++LL+++PS RP
Sbjct: 216 KRISRVEFTFPDFVTEGARDLISRLLKHNPSQRP 249

>pdb|3MA6|A Chain A, Crystal Structure Of Kinase Domain Of Tgcdpk1 In Presence Of 3brb-Pp1 Length = 298

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 71/166 (42%), Gaps = 25/166 (15%)
Query: 345 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYS 404
           +  Q+L G+T+++ ++  HRDLK +N+LL+    +    + I DFG S   ++   M+  
Sbjct: 137 IIRQVLSGITYMHKNKIVHRDLKPENLLLESKSKDA--NIRIIDFGLSTHFEASKKMK-- 192
Query: 405 SADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPF-------- 456
               +  G    +APEV   T          K D W+ G + Y +     PF        
Sbjct: 193 ----DKIGTAYYIAPEVLHGTYD-------EKCDVWSTGVILYILLSGCPPFNGANEYDI 241
Query: 457 YQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA 502
            +      Y    LPQ    V E  + L+ K+L   PS R SA  A
Sbjct: 242 LKKVEKGKYTFE-LPQWK-KVSESAKDLIRKMLTYVPSMRISARDA 285

>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors Length = 283

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 20/154 (12%)
Query: 346 FTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSS 405
            T+L   +++ +  R  HRD+K +N+LL      +  +L I DFG S           SS
Sbjct: 117 ITELANALSYCHSKRVIHRDIKPENLLL-----GSAGELKIADFGWSVHAP-------SS 164
Query: 406 ADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY 465
               L G +  + PE+      +   ++  K D W+ G + YE      PF  +     Y
Sbjct: 165 RRAALCGTLDYLPPEM------IEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETY 218
Query: 466 EVNALPQLN--TNVPEVMRRLVAKLLENDPSDRP 497
           +  +  +      V E  R L+++LL+++PS RP
Sbjct: 219 KRISRVEFTFPDFVTEGARDLISRLLKHNPSQRP 252

>pdb|3GU8|A Chain A, Crystal Structure Of Dapkl93g With N6-Cyclopentyladenosine Length = 295

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 96/237 (40%), Gaps = 57/237 (24%)
Query: 271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYL 330
           HPNV+ +H  + +    I    L+            GG                +L ++L
Sbjct: 73  HPNVITLHEVYENKTDVILIGELV-----------AGG----------------ELFDFL 105
Query: 331 RERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG 390
            E+ + L+  E      Q+L GV +L+  + AH DLK +NI+L    +   P++ I DFG
Sbjct: 106 AEKES-LTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIML-LDRNVPKPRIKIIDFG 163
Query: 391 SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP-GLFSFVNYSKSDAWTAGTVAYEI 449
            ++       + + +    + G    +APE+    P GL       ++D W+ G + Y +
Sbjct: 164 LAH------KIDFGNEFKNIFGTPEFVAPEIVNYEPLGL-------EADMWSIGVITYIL 210
Query: 450 FGHDNPFYQ----------SARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDR 496
               +PF            SA N ++E       +    + +RRL+ K    DP  R
Sbjct: 211 LSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVK----DPKKR 263

>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form) Length = 285

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 20/154 (12%)
Query: 346 FTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSS 405
            T+L   +++ +  R  HRD+K +N+LL      +  +L I DFG S           SS
Sbjct: 119 ITELANALSYCHSKRVIHRDIKPENLLL-----GSAGELKIADFGWSVHAP-------SS 166
Query: 406 ADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY 465
               L G +  + PE+      +   ++  K D W+ G + YE      PF  +     Y
Sbjct: 167 RRTTLCGTLDYLPPEM------IEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETY 220
Query: 466 EVNALPQLN--TNVPEVMRRLVAKLLENDPSDRP 497
           +  +  +      V E  R L+++LL+++PS RP
Sbjct: 221 KRISRVEFTFPDFVTEGARDLISRLLKHNPSQRP 254

>pdb|3COK|A Chain A, Crystal Structure Of Plk4 Kinase Length = 278

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 124/311 (39%), Gaps = 79/311 (25%)
Query: 199 QIGKFIAKGTNAVVY--EATFRGVEYALKMMFNYSAASNSHAILKAMSXXXXXXXXXXXX 256
           ++G  + KG+ A VY  E+   G+E A+KM+       +  A+ KA              
Sbjct: 14  KVGNLLGKGSFAGVYRAESIHTGLEVAIKMI-------DKKAMYKAGMVQRVQNEV---- 62
Query: 257 XXDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLF 316
                   +     HP+++ ++  F        DS+ +Y                     
Sbjct: 63  -------KIHCQLKHPSILELYNYF-------EDSNYVY--------------------L 88
Query: 317 ILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCS 376
           +L   +N ++  YL+ R    S +E      Q++ G+ +L+ H   HRDL   N+LL  +
Sbjct: 89  VLEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGMLYLHSHGILHRDLTLSNLLLTRN 148
Query: 377 EDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP-GLFSFVNYS 435
            +     + I DFG +   K      Y+     L G    ++PE+A  +  GL       
Sbjct: 149 MN-----IKIADFGLATQLKMPHEKHYT-----LCGTPNYISPEIATRSAHGL------- 191
Query: 436 KSDAWTAGTVAYEIFGHDNPF-YQSARNT-------DYEVNALPQLNTNVPEVMRRLVAK 487
           +SD W+ G + Y +     PF   + +NT       DYE+ +   +        + L+ +
Sbjct: 192 ESDVWSLGCMFYTLLIGRPPFDTDTVKNTLNKVVLADYEMPSFLSIEA------KDLIHQ 245
Query: 488 LLENDPSDRPS 498
           LL  +P+DR S
Sbjct: 246 LLRRNPADRLS 256

>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor Length = 285

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 20/154 (12%)
Query: 346 FTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSS 405
            T+L   +++ +  R  HRD+K +N+LL      +  +L I DFG S           SS
Sbjct: 119 ITELANALSYCHSKRVIHRDIKPENLLL-----GSAGELKIADFGWSVHAP-------SS 166
Query: 406 ADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY 465
               L G +  + PE+      +   ++  K D W+ G + YE      PF  +     Y
Sbjct: 167 RRTTLCGTLDYLPPEM------IEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETY 220
Query: 466 EVNALPQLN--TNVPEVMRRLVAKLLENDPSDRP 497
           +  +  +      V E  R L+++LL+++PS RP
Sbjct: 221 KRISRVEFTFPDFVTEGARDLISRLLKHNPSQRP 254

>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine Inhibitor Length = 283

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 20/154 (12%)
Query: 346 FTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSS 405
            T+L   +++ +  R  HRD+K +N+LL      +  +L I DFG S           SS
Sbjct: 117 ITELANALSYCHSKRVIHRDIKPENLLL-----GSAGELKIADFGWSVHAP-------SS 164
Query: 406 ADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY 465
               L G +  + PE+      +   ++  K D W+ G + YE      PF  +     Y
Sbjct: 165 RRTTLCGTLDYLPPEM------IEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETY 218
Query: 466 EVNALPQLN--TNVPEVMRRLVAKLLENDPSDRP 497
           +  +  +      V E  R L+++LL+++PS RP
Sbjct: 219 KRISRVEFTFPDFVTEGARDLISRLLKHNPSQRP 252

>pdb|1U5Q|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation And Specifity Of A Ste20p Map3k Length = 348

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 87/199 (43%), Gaps = 45/199 (22%)
Query: 329 YLRERCAQLSM-------------HERVLLFTQL-------LEGVTHLNMHRTAHRDLKS 368
           YLRE  A L M             H++ L   ++       L+G+ +L+ H   HRD+K+
Sbjct: 123 YLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKA 182
Query: 369 DNILLDCSEDNTCPQLV-ITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALA-TP 426
            NILL      + P LV + DFGS+        M  ++  +   G    MAPEV LA   
Sbjct: 183 GNILL------SEPGLVKLGDFGSASI------MAPANXFV---GTPYWMAPEVILAMDE 227
Query: 427 GLFSFVNYSKSDAWTAGTVAYEIFGHDNP-FYQSARNTDYEV--NALPQLNT-NVPEVMR 482
           G +      K D W+ G    E+     P F  +A +  Y +  N  P L + +  E  R
Sbjct: 228 GQYD----GKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPALQSGHWSEYFR 283
Query: 483 RLVAKLLENDPSDRPSAEL 501
             V   L+  P DRP++E+
Sbjct: 284 NFVDSCLQKIPQDRPTSEV 302

>pdb|2W4J|A Chain A, X-Ray Structure Of A Dap-Kinase 2-277 Length = 277

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 30/183 (16%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           +L ++L E+ + L+  E      Q+L GV +L+  + AH DLK +NI+L    +   P++
Sbjct: 100 ELFDFLAEKES-LTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIML-LDRNVPKPRI 157
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP-GLFSFVNYSKSDAWTAG 443
            I DFG ++       + + +    + G    +APE+    P GL       ++D W+ G
Sbjct: 158 KIIDFGLAH------KIDFGNEFKNIFGTPEFVAPEIVNYEPLGL-------EADMWSIG 204
Query: 444 TVAYEIFGHDNPFYQ----------SARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDP 493
            + Y +    +PF            SA N ++E       +    + +RRL+ K    DP
Sbjct: 205 VITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVK----DP 260
Query: 494 SDR 496
             R
Sbjct: 261 KKR 263

>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632 Length = 306

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 70/154 (45%), Gaps = 20/154 (12%)
Query: 346 FTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSS 405
            T+L   +++ +  R  HRD+K +N+LL      +  +L I DFG S           SS
Sbjct: 140 ITELANALSYCHSKRVIHRDIKPENLLL-----GSAGELKIADFGWSVHAP-------SS 187
Query: 406 ADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY 465
              +L G +  + PE+      +   ++  K D W+ G + YE      PF  +     Y
Sbjct: 188 RRDDLCGTLDYLPPEM------IEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETY 241
Query: 466 EVNALPQLN--TNVPEVMRRLVAKLLENDPSDRP 497
           +  +  +      V E  R L+++LL+++PS RP
Sbjct: 242 KRISRVEFTFPDFVTEGARDLISRLLKHNPSQRP 275

>pdb|2GCD|A Chain A, Tao2 Kinase Domain-Staurosporine Structure Length = 309

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 87/199 (43%), Gaps = 45/199 (22%)
Query: 329 YLRERCAQLSM-------------HERVLLFTQL-------LEGVTHLNMHRTAHRDLKS 368
           YLRE  A L M             H++ L   ++       L+G+ +L+ H   HRD+K+
Sbjct: 84  YLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKA 143
Query: 369 DNILLDCSEDNTCPQLV-ITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALA-TP 426
            NILL      + P LV + DFGS+        M  ++  +   G    MAPEV LA   
Sbjct: 144 GNILL------SEPGLVKLGDFGSASI------MAPANXFV---GTPYWMAPEVILAMDE 188
Query: 427 GLFSFVNYSKSDAWTAGTVAYEIFGHDNP-FYQSARNTDYEV--NALPQLNT-NVPEVMR 482
           G +      K D W+ G    E+     P F  +A +  Y +  N  P L + +  E  R
Sbjct: 189 GQYD----GKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPALQSGHWSEYFR 244
Query: 483 RLVAKLLENDPSDRPSAEL 501
             V   L+  P DRP++E+
Sbjct: 245 NFVDSCLQKIPQDRPTSEV 263

>pdb|1WVW|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In Complex With Small Molecular Inhibitors Length = 278

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 30/183 (16%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           +L ++L E+ + L+  E      Q+L GV +L+  + AH DLK +NI+L    +   P++
Sbjct: 100 ELFDFLAEKES-LTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIML-LDRNVPKPRI 157
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP-GLFSFVNYSKSDAWTAG 443
            I DFG ++       + + +    + G    +APE+    P GL       ++D W+ G
Sbjct: 158 KIIDFGLAH------KIDFGNEFKNIFGTPEFVAPEIVNYEPLGL-------EADMWSIG 204
Query: 444 TVAYEIFGHDNPFYQ----------SARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDP 493
            + Y +    +PF            SA N ++E       +    + +RRL+ K    DP
Sbjct: 205 VITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVK----DP 260
Query: 494 SDR 496
             R
Sbjct: 261 KKR 263

>pdb|3GU4|A Chain A, Crystal Structure Of Dapkq23v-Amppnp Length = 295

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 30/183 (16%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           +L ++L E+ + L+  E      Q+L GV +L+  + AH DLK +NI+L    +   P++
Sbjct: 100 ELFDFLAEKES-LTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIML-LDRNVPKPRI 157
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP-GLFSFVNYSKSDAWTAG 443
            I DFG ++       + + +    + G    +APE+    P GL       ++D W+ G
Sbjct: 158 KIIDFGLAH------KIDFGNEFKNIFGTPEFVAPEIVNYEPLGL-------EADMWSIG 204
Query: 444 TVAYEIFGHDNPFYQ----------SARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDP 493
            + Y +    +PF            SA N ++E       +    + +RRL+ K    DP
Sbjct: 205 VITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVK----DP 260
Query: 494 SDR 496
             R
Sbjct: 261 KKR 263

>pdb|2YAK|A Chain A, Structure Of Death-Associated Protein Kinase 1 (Dapk1) In Complex With A Ruthenium Octasporine Ligand (Osv) Length = 285

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 30/183 (16%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           +L ++L E+ + L+  E      Q+L GV +L+  + AH DLK +NI+L    +   P++
Sbjct: 100 ELFDFLAEKES-LTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIML-LDRNVPKPRI 157
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP-GLFSFVNYSKSDAWTAG 443
            I DFG ++       + + +    + G    +APE+    P GL       ++D W+ G
Sbjct: 158 KIIDFGLAH------KIDFGNEFKNIFGTPEFVAPEIVNYEPLGL-------EADMWSIG 204
Query: 444 TVAYEIFGHDNPFYQ----------SARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDP 493
            + Y +    +PF            SA N ++E       +    + +RRL+ K    DP
Sbjct: 205 VITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVK----DP 260
Query: 494 SDR 496
             R
Sbjct: 261 KKR 263

>pdb|2W4K|A Chain A, X-Ray Structure Of A Dap-Kinase 2-302 Length = 302

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 30/183 (16%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           +L ++L E+ + L+  E      Q+L GV +L+  + AH DLK +NI+L    +   P++
Sbjct: 100 ELFDFLAEKES-LTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIML-LDRNVPKPRI 157
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP-GLFSFVNYSKSDAWTAG 443
            I DFG ++       + + +    + G    +APE+    P GL       ++D W+ G
Sbjct: 158 KIIDFGLAH------KIDFGNEFKNIFGTPEFVAPEIVNYEPLGL-------EADMWSIG 204
Query: 444 TVAYEIFGHDNPFYQ----------SARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDP 493
            + Y +    +PF            SA N ++E       +    + +RRL+ K    DP
Sbjct: 205 VITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVK----DP 260
Query: 494 SDR 496
             R
Sbjct: 261 KKR 263

>pdb|1P4F|A Chain A, Death Associated Protein Kinase Catalytic Domain With Bound Inhibitor Fragment Length = 293

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 30/183 (16%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           +L ++L E+ + L+  E      Q+L GV +L+  + AH DLK +NI+L    +   P++
Sbjct: 99  ELFDFLAEKES-LTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIML-LDRNVPKPRI 156
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP-GLFSFVNYSKSDAWTAG 443
            I DFG ++       + + +    + G    +APE+    P GL       ++D W+ G
Sbjct: 157 KIIDFGLAH------KIDFGNEFKNIFGTPEFVAPEIVNYEPLGL-------EADMWSIG 203
Query: 444 TVAYEIFGHDNPFYQ----------SARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDP 493
            + Y +    +PF            SA N ++E       +    + +RRL+ K    DP
Sbjct: 204 VITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVK----DP 259
Query: 494 SDR 496
             R
Sbjct: 260 KKR 262

>pdb|3DFC|B Chain B, Crystal Structure Of A Glycine-Rich Loop Mutant Of The Death Associated Protein Kinase Catalytic Domain With Amppnp Length = 295

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 30/183 (16%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           +L ++L E+ + L+  E      Q+L GV +L+  + AH DLK +NI+L    +   P++
Sbjct: 100 ELFDFLAEKES-LTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIML-LDRNVPKPRI 157
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP-GLFSFVNYSKSDAWTAG 443
            I DFG ++       + + +    + G    +APE+    P GL       ++D W+ G
Sbjct: 158 KIIDFGLAH------KIDFGNEFKNIFGTPEFVAPEIVNYEPLGL-------EADMWSIG 204
Query: 444 TVAYEIFGHDNPFYQ----------SARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDP 493
            + Y +    +PF            SA N ++E       +    + +RRL+ K    DP
Sbjct: 205 VITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVK----DP 260
Query: 494 SDR 496
             R
Sbjct: 261 KKR 263

>pdb|3F5U|A Chain A, Crystal Structure Of The Death Associated Protein Kinase In Complex With Amppnp And Mg2+ Length = 295

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 30/183 (16%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           +L ++L E+ + L+  E      Q+L GV +L+  + AH DLK +NI+L    +   P++
Sbjct: 100 ELFDFLAEKES-LTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIML-LDRNVPKPRI 157
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP-GLFSFVNYSKSDAWTAG 443
            I DFG ++       + + +    + G    +APE+    P GL       ++D W+ G
Sbjct: 158 KIIDFGLAH------KIDFGNEFKNIFGTPEFVAPEIVNYEPLGL-------EADMWSIG 204
Query: 444 TVAYEIFGHDNPFYQ----------SARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDP 493
            + Y +    +PF            SA N ++E       +    + +RRL+ K    DP
Sbjct: 205 VITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVK----DP 260
Query: 494 SDR 496
             R
Sbjct: 261 KKR 263

>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase Complex With Dasatinib Length = 268

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 60/129 (46%), Gaps = 17/129 (13%)
Query: 323 NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 382
           N  L NYLR     L   + + +   + EG+  L  H+  HRDL + N L+D    + C 
Sbjct: 87  NGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLESHQFIHRDLAARNCLVD---RDLCV 143
Query: 383 QLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY-SKSDAWT 441
           +  ++DFG     +  L  QY S+       V    P V  + P +F +  Y SKSD W 
Sbjct: 144 K--VSDFG---MTRYVLDDQYVSS-------VGTKFP-VKWSAPEVFHYFKYSSKSDVWA 190
Query: 442 AGTVAYEIF 450
            G + +E+F
Sbjct: 191 FGILMWEVF 199

>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine- Threonine Kinase Length = 297

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 20/154 (12%)
Query: 346 FTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSS 405
            T+L   +++ +  R  HRD+K +N+LL      +  +L I DFG S           SS
Sbjct: 131 ITELANALSYCHSKRVIHRDIKPENLLL-----GSAGELKIADFGWSVHAP-------SS 178
Query: 406 ADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY 465
               L G +  + PE+      +   ++  K D W+ G + YE      PF  +     Y
Sbjct: 179 RRTTLCGTLDYLPPEM------IEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETY 232
Query: 466 EVNALPQLN--TNVPEVMRRLVAKLLENDPSDRP 497
           +  +  +      V E  R L+++LL+++PS RP
Sbjct: 233 KRISRVEFTFPDFVTEGARDLISRLLKHNPSQRP 266

>pdb|1IG1|A Chain A, 1.8a X-Ray Structure Of Ternary Complex Of A Catalytic Domain Of Death-Associated Protein Kinase With Atp Analogue And Mn. Length = 294

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 30/183 (16%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           +L ++L E+ + L+  E      Q+L GV +L+  + AH DLK +NI+L    +   P++
Sbjct: 99  ELFDFLAEKES-LTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIML-LDRNVPKPRI 156
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP-GLFSFVNYSKSDAWTAG 443
            I DFG ++       + + +    + G    +APE+    P GL       ++D W+ G
Sbjct: 157 KIIDFGLAH------KIDFGNEFKNIFGTPEFVAPEIVNYEPLGL-------EADMWSIG 203
Query: 444 TVAYEIFGHDNPFYQ----------SARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDP 493
            + Y +    +PF            SA N ++E       +    + +RRL+ K    DP
Sbjct: 204 VITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVK----DP 259
Query: 494 SDR 496
             R
Sbjct: 260 KKR 262

>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626 Length = 306

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 20/154 (12%)
Query: 346 FTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSS 405
            T+L   +++ +  R  HRD+K +N+LL      +  +L I DFG S           SS
Sbjct: 140 ITELANALSYCHSKRVIHRDIKPENLLL-----GSAGELKIADFGWSVHAP-------SS 187
Query: 406 ADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY 465
               L G +  + PE+      +   ++  K D W+ G + YE      PF  +     Y
Sbjct: 188 RRTTLCGTLDYLPPEM------IEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETY 241
Query: 466 EVNALPQLN--TNVPEVMRRLVAKLLENDPSDRP 497
           +  +  +      V E  R L+++LL+++PS RP
Sbjct: 242 KRISRVEFTFPDFVTEGARDLISRLLKHNPSQRP 275

>pdb|2XZS|A Chain A, Death Associated Protein Kinase 1 Residues 1-312 Length = 312

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 30/183 (16%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           +L ++L E+ + L+  E      Q+L GV +L+  + AH DLK +NI+L    +   P++
Sbjct: 100 ELFDFLAEKES-LTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIML-LDRNVPKPRI 157
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP-GLFSFVNYSKSDAWTAG 443
            I DFG ++       + + +    + G    +APE+    P GL       ++D W+ G
Sbjct: 158 KIIDFGLAH------KIDFGNEFKNIFGTPEFVAPEIVNYEPLGL-------EADMWSIG 204
Query: 444 TVAYEIFGHDNPFYQ----------SARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDP 493
            + Y +    +PF            SA N ++E       +    + +RRL+ K    DP
Sbjct: 205 VITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVK----DP 260
Query: 494 SDR 496
             R
Sbjct: 261 KKR 263

>pdb|1LUF|A Chain A, Crystal Structure Of The Musk Tyrosine Kinase: Insights Into Receptor Autoregulation Length = 343

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 74/169 (43%), Gaps = 24/169 (14%)
Query: 337 LSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNK 396
           LS  E++ +  Q+  G+ +L+  +  HRDL + N L+    +N    + I DFG S   +
Sbjct: 171 LSCAEQLCIARQVAAGMAYLSERKFVHRDLATRNCLVG---ENMV--VKIADFGLS---R 222
Query: 397 SGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHD-NP 455
           +  S  Y  AD      +  M PE       +F     ++SD W  G V +EIF +   P
Sbjct: 223 NIYSADYYKADGNDAIPIRWMPPE------SIFYNRYTTESDVWAYGVVLWEIFSYGLQP 276
Query: 456 FYQSARNT------DYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS 498
           +Y  A         D  + A P+   N P  +  L+       P+DRPS
Sbjct: 277 YYGMAHEEVIYYVRDGNILACPE---NCPLELYNLMRLCWSKLPADRPS 322

>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679 Length = 279

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 20/153 (13%)
Query: 347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSA 406
           T+L   +++ +  R  HRD+K +N+LL      +  +L I DFG S    S      S  
Sbjct: 116 TELANALSYCHSKRVIHRDIKPENLLL-----GSAGELKIADFGWSVHAPS------SRR 164
Query: 407 DIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE 466
           D  L G +  + PE+      +   ++  K D W+ G + YE      PF  +     Y+
Sbjct: 165 DT-LCGTLDYLPPEM------IEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYK 217
Query: 467 VNALPQLN--TNVPEVMRRLVAKLLENDPSDRP 497
             +  +      V E  R L+++LL+++PS RP
Sbjct: 218 RISRVEFTFPDFVTEGARDLISRLLKHNPSQRP 250

>pdb|3DLS|A Chain A, Crystal Structure Of Human Pas Kinase Bound To Adp Length = 335

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 88/197 (44%), Gaps = 24/197 (12%)
Query: 311 RNMSLF-ILMKKYNTDLRNY-LRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKS 368
            N   F ++M+K+ + L  +   +R  +L       +F QL+  V +L +    HRD+K 
Sbjct: 99  ENQGFFQLVMEKHGSGLDLFAFIDRHPRLDEPLASYIFRQLVSAVGYLRLKDIIHRDIKD 158
Query: 369 DNILLDCSEDNTCPQLVITDFGS-SYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG 427
           +NI++  +ED T   + + DFGS +Y  +  L   +        G +   APEV +  P 
Sbjct: 159 ENIVI--AEDFT---IKLIDFGSAAYLERGKLFYTFC-------GTIEYCAPEVLMGNP- 205
Query: 428 LFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAK 487
                   + + W+ G   Y +   +NPF +     +  ++  P L   V + +  LV+ 
Sbjct: 206 ----YRGPELEMWSLGVTLYTLVFEENPFCELEETVEAAIHP-PYL---VSKELMSLVSG 257
Query: 488 LLENDPSDRPSAELAAT 504
           LL+  P  R + E   T
Sbjct: 258 LLQPVPERRTTLEKLVT 274

>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib Length = 266

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 79/178 (44%), Gaps = 21/178 (11%)
Query: 326 LRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLV 385
           L +YLR +    +    + +   + EG+ +L      HRDL + N L+   E+     + 
Sbjct: 89  LSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEASVIHRDLAARNCLV--GENQV---IK 143
Query: 386 ITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGT 444
           ++DFG     +  L  QY+S+            P V  A+P +FSF  YS KSD W+ G 
Sbjct: 144 VSDFG---MTRFVLDDQYTSS-------TGTKFP-VKWASPEVFSFSRYSSKSDVWSFGV 192
Query: 445 VAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLL----ENDPSDRPS 498
           + +E+F      Y++  N++   +         P +    V +++    +  P DRP+
Sbjct: 193 LMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRLASTHVYQIMNHCWKERPEDRPA 250

>pdb|2VN9|A Chain A, Crystal Structure Of Human Calcium Calmodulin Dependent Protein Kinase Ii Delta Isoform 1, Camkd Length = 301

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 73/172 (42%), Gaps = 28/172 (16%)
Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
           Q+LE V H +++   HRDLK +N+LL         +L   DFG +   +      +  A 
Sbjct: 111 QILESVNHCHLNGIVHRDLKPENLLLASKSKGAAVKL--ADFGLAIEVQGDQQAWFGFA- 167
Query: 408 IELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPF--------YQ 458
               G    ++PEV    P       Y K  D W  G + Y +     PF        YQ
Sbjct: 168 ----GTPGYLSPEVLRKDP-------YGKPVDMWACGVILYILLVGYPPFWDEDQHRLYQ 216
Query: 459 SARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAAT---VCQ 507
             +   Y+  + P+ +T  PE  + L+ K+L  +P+ R +A  A     +CQ
Sbjct: 217 QIKAGAYDFPS-PEWDTVTPEA-KDLINKMLTINPAKRITASEALKHPWICQ 266

>pdb|3V3V|A Chain A, Structural And Functional Analysis Of Quercetagetin, A Natural Jnk1 Inhibitor Length = 379

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 81/194 (41%), Gaps = 44/194 (22%)
Query: 314 SLFILMKKYNTDLRNYLRERCAQLSM---HERV-LLFTQLLEGVTHLNMHRTAHRDLKSD 369
            ++I+M+  + +L       C  + M   HER+  L  Q+L G+ HL+     HRDLK  
Sbjct: 103 DVYIVMELMDANL-------CQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPS 155
Query: 370 NILL--DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVA---LA 424
           NI++  DC+       L I DFG + T                 G   +M PEV      
Sbjct: 156 NIVVKSDCT-------LKILDFGLART----------------AGTSFMMTPEVVTRYYR 192
Query: 425 TPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRR 483
            P +   + Y ++ D W+ G +  E+       +    + D     + QL T  PE M++
Sbjct: 193 APEVILGMGYKENVDIWSVGCIMGEMI-KGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKK 251
Query: 484 L---VAKLLENDPS 494
           L   V   +EN P 
Sbjct: 252 LQPTVRTYVENRPK 265

>pdb|2X0G|A Chain A, X-ray Structure Of A Dap-kinase Calmodulin Complex Length = 334

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 81/183 (44%), Gaps = 30/183 (16%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           +L ++L E+   L+  E      Q+L GV +L+  + AH DLK +NI+L    +   P++
Sbjct: 100 ELFDFLAEK-ESLTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIML-LDRNVPKPRI 157
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP-GLFSFVNYSKSDAWTAG 443
            I DFG ++       + + +    + G    +APE+    P GL       ++D W+ G
Sbjct: 158 KIIDFGLAH------KIDFGNEFKNIFGTPEFVAPEIVNYEPLGL-------EADMWSIG 204
Query: 444 TVAYEIFGHDNPFYQ----------SARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDP 493
            + Y +    +PF            SA N ++E       +    + +RRL+ K    DP
Sbjct: 205 VITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVK----DP 260
Query: 494 SDR 496
             R
Sbjct: 261 KKR 263

>pdb|2Y0A|A Chain A, Structure Of Dapk1 Construct Residues 1-304 Length = 326

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 30/183 (16%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           +L ++L E+ + L+  E      Q+L GV +L+  + AH DLK +NI+L    +   P++
Sbjct: 100 ELFDFLAEKES-LTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIML-LDRNVPKPRI 157
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP-GLFSFVNYSKSDAWTAG 443
            I DFG ++       + + +    + G    +APE+    P GL       ++D W+ G
Sbjct: 158 KIIDFGLAH------KIDFGNEFKNIFGTPEFVAPEIVNYEPLGL-------EADMWSIG 204
Query: 444 TVAYEIFGHDNPFYQ----------SARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDP 493
            + Y +    +PF            SA N ++E       +    + +RRL+ K    DP
Sbjct: 205 VITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVK----DP 260
Query: 494 SDR 496
             R
Sbjct: 261 KKR 263

>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain With Thienopyrazolylindole Inhibitor 090 Length = 266

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 79/178 (44%), Gaps = 21/178 (11%)
Query: 326 LRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLV 385
           L +YLR +    +    + +   + EG+ +L      HRDL + N L+   E+     + 
Sbjct: 89  LSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLV--GENQV---IK 143
Query: 386 ITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGT 444
           ++DFG     +  L  QY+S+            P V  A+P +FSF  YS KSD W+ G 
Sbjct: 144 VSDFG---MTRFVLDDQYTSS-------TGTKFP-VKWASPEVFSFSRYSSKSDVWSFGV 192
Query: 445 VAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLL----ENDPSDRPS 498
           + +E+F      Y++  N++   +         P +    V +++    +  P DRP+
Sbjct: 193 LMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRLASTHVYQIMNHCWKERPEDRPA 250

>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase Catalytic Subunit From Saccharomyces Cerevisiae Length = 318

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 64/145 (44%), Gaps = 27/145 (18%)
Query: 352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELG 411
            + +L+     +RDLK +NILLD +       + ITDFG         +         L 
Sbjct: 118 ALEYLHSKDIIYRDLKPENILLDKNG-----HIKITDFG--------FAKYVPDVTYXLC 164
Query: 412 GNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYE--VN 468
           G    +APEV    P       Y+KS D W+ G + YE+     PFY S     YE  +N
Sbjct: 165 GTPDYIAPEVVSTKP-------YNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKILN 217
Query: 469 AL----PQLNTNVPEVMRRLVAKLL 489
           A     P  N +V +++ RL+ + L
Sbjct: 218 AELRFPPFFNEDVKDLLSRLITRDL 242

>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor Length = 286

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 79/178 (44%), Gaps = 21/178 (11%)
Query: 326 LRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLV 385
           L +YLR +    +    + +   + EG+ +L      HRDL + N L+   E+     + 
Sbjct: 109 LSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLV--GENQV---IK 163
Query: 386 ITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGT 444
           ++DFG     +  L  QY+S+            P V  A+P +FSF  YS KSD W+ G 
Sbjct: 164 VSDFG---MTRFVLDDQYTSS-------TGTKFP-VKWASPEVFSFSRYSSKSDVWSFGV 212
Query: 445 VAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLL----ENDPSDRPS 498
           + +E+F      Y++  N++   +         P +    V +++    +  P DRP+
Sbjct: 213 LMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRLASTHVYQIMNHCWKERPEDRPA 270

>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2 Tyrosine Kinase Catalytic Domain Length = 264

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 79/178 (44%), Gaps = 21/178 (11%)
Query: 326 LRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLV 385
           L +YLR +    +    + +   + EG+ +L      HRDL + N L+   E+     + 
Sbjct: 87  LSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLV--GENQV---IK 141
Query: 386 ITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGT 444
           ++DFG     +  L  QY+S+            P V  A+P +FSF  YS KSD W+ G 
Sbjct: 142 VSDFG---MTRFVLDDQYTSS-------TGTKFP-VKWASPEVFSFSRYSSKSDVWSFGV 190
Query: 445 VAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLL----ENDPSDRPS 498
           + +E+F      Y++  N++   +         P +    V +++    +  P DRP+
Sbjct: 191 LMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRLASTHVYQIMNHCWKERPEDRPA 248

>pdb|2WEL|A Chain A, Crystal Structure Of Su6656-Bound CalciumCALMODULIN- Dependent Protein Kinase Ii Delta In Complex With Calmodulin Length = 327

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 73/172 (42%), Gaps = 28/172 (16%)
Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
           Q+LE V H +++   HRDLK +N+LL         +L   DFG +   +      +  A 
Sbjct: 111 QILESVNHCHLNGIVHRDLKPENLLLASKSKGAAVKL--ADFGLAIEVQGDQQAWFGFA- 167
Query: 408 IELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPF--------YQ 458
               G    ++PEV    P       Y K  D W  G + Y +     PF        YQ
Sbjct: 168 ----GTPGYLSPEVLRKDP-------YGKPVDMWACGVILYILLVGYPPFWDEDQHRLYQ 216
Query: 459 SARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAAT---VCQ 507
             +   Y+  + P+ +T  PE  + L+ K+L  +P+ R +A  A     +CQ
Sbjct: 217 QIKAGAYDFPS-PEWDTVTPEA-KDLINKMLTINPAKRITASEALKHPWICQ 266

>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A Pentacyclic Inhibitor Length = 268

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 20/153 (13%)
Query: 347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSA 406
           T+L   +++ +  +  HRD+K +N+LL      +  +L I DFG S           SS 
Sbjct: 115 TELANALSYCHSKKVIHRDIKPENLLL-----GSAGELKIADFGWSVHAP-------SSR 162
Query: 407 DIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE 466
              L G +  + PE+      +   ++  K D W+ G + YE      PF  +     Y+
Sbjct: 163 RAALCGTLDYLPPEM------IEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQDTYK 216
Query: 467 VNALPQLN--TNVPEVMRRLVAKLLENDPSDRP 497
             +  +      V E  R L+++LL+++PS RP
Sbjct: 217 RISRVEFTFPDFVTEGARDLISRLLKHNPSQRP 249

>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp Length = 285

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 20/153 (13%)
Query: 347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSA 406
           T+L   +++ +  R  HRD+K +N+LL      +  +L I DFG S           SS 
Sbjct: 120 TELANALSYCHSKRVIHRDIKPENLLL-----GSAGELKIADFGWSVHAP-------SSR 167
Query: 407 DIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE 466
              L G +  + PE       +    +  K D W+ G + YE      PF  +     Y+
Sbjct: 168 RTTLCGTLDYLPPEX------IEGRXHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYK 221
Query: 467 VNALPQLN--TNVPEVMRRLVAKLLENDPSDRP 497
             +  +      V E  R L+++LL+++PS RP
Sbjct: 222 RISRVEFTFPDFVTEGARDLISRLLKHNPSQRP 254

>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52 Length = 269

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 78/178 (43%), Gaps = 21/178 (11%)
Query: 326 LRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLV 385
           L +YLR +    +    + +   + EG+ +L      HRDL + N L+   E+     + 
Sbjct: 92  LSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLV--GENQV---IK 146
Query: 386 ITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGT 444
           ++DFG     +  L  QY+S+            P V  A+P +FSF  YS KSD W+ G 
Sbjct: 147 VSDFG---MTRFVLDDQYTSS-------TGTKFP-VKWASPEVFSFSRYSSKSDVWSFGV 195
Query: 445 VAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLL----ENDPSDRPS 498
           + +E+F      Y++  N++   +         P +    V +++       P DRP+
Sbjct: 196 LMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRLASTHVYQIMNHCWRERPEDRPA 253

>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed With Compound 16 Length = 271

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 75/167 (44%), Gaps = 33/167 (19%)
Query: 347 TQLLEGVTHLNMHRTA---HRDLKSDNILLDCSEDN---TCPQLVITDFGSSYTNKSGLS 400
            Q+  G+ +L+        HRDLKS NIL+    +N   +   L ITDFG +        
Sbjct: 112 VQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLARE------ 165
Query: 401 MQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSA 460
             + +  +   G  A MAPEV  A+  +FS      SD W+ G + +E+   + PF    
Sbjct: 166 -WHRTTKMSAAGAYAWMAPEVIRAS--MFS----KGSDVWSYGVLLWELLTGEVPF---- 214
Query: 461 RNTD-----YEVNALPQLNTNVPEVMRRLVAKLLEN----DPSDRPS 498
           R  D     Y V A+ +L   +P       AKL+E+    DP  RPS
Sbjct: 215 RGIDGLAVAYGV-AMNKLALPIPSTCPEPFAKLMEDCWNPDPHSRPS 260

>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed With Imidazo[1,5-A]quinoxaline Length = 267

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 78/178 (43%), Gaps = 21/178 (11%)
Query: 326 LRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLV 385
           L +YLR +    +    + +   + EG+ +L      HRDL + N L+   E+     + 
Sbjct: 90  LSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLV--GENQV---IK 144
Query: 386 ITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGT 444
           ++DFG     +  L  QY+S+            P V  A+P +FSF  YS KSD W+ G 
Sbjct: 145 VSDFG---MTRFVLDDQYTSS-------TGTKFP-VKWASPEVFSFSRYSSKSDVWSFGV 193
Query: 445 VAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLL----ENDPSDRPS 498
           + +E+F      Y++  N++   +         P +    V +++       P DRP+
Sbjct: 194 LMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRLASTHVYQIMNHCWRERPEDRPA 251

>pdb|1VZO|A Chain A, The Structure Of The N-Terminal Kinase Domain Of Msk1 Reveals A Novel Autoinhibitory Conformation For A Dual Kinase Protein Length = 355

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 80/177 (45%), Gaps = 32/177 (18%)
Query: 331 RERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG 390
           RER  +   HE  +   +++  + HL+     +RD+K +NILLD +       +V+TDF 
Sbjct: 153 RERFTE---HEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSN-----GHVVLTDF- 203
Query: 391 SSYTNKSGLSMQYSSADIE----LGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTV 445
                  GLS ++ + + E      G +  MAP++            + K+ D W+ G +
Sbjct: 204 -------GLSKEFVADETERAYDFCGTIEYMAPDIVRGGDS-----GHDKAVDWWSLGVL 251
Query: 446 AYEIFGHDNPF-YQSARNTDYEVN-----ALPQLNTNVPEVMRRLVAKLLENDPSDR 496
            YE+    +PF     +N+  E++     + P     +  + + L+ +LL  DP  R
Sbjct: 252 MYELLTGASPFTVDGEKNSQAEISRRILKSEPPYPQEMSALAKDLIQRLLMKDPKKR 308

>pdb|3O17|A Chain A, Crystal Structure Of Jnk1-Alpha1 Isoform Length = 370

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 80/194 (41%), Gaps = 44/194 (22%)
Query: 314 SLFILMKKYNTDLRNYLRERCAQLSM---HERV-LLFTQLLEGVTHLNMHRTAHRDLKSD 369
            ++I+M+  + +L       C  + M   HER+  L  Q+L G+ HL+     HRDLK  
Sbjct: 103 DVYIVMELMDANL-------CQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPS 155
Query: 370 NILL--DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVA---LA 424
           NI++  DC+       L I DFG + T                 G   +M PEV      
Sbjct: 156 NIVVKSDCT-------LKILDFGLART----------------AGTSFMMEPEVVTRYYR 192
Query: 425 TPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRR 483
            P +   + Y ++ D W+ G +  E+  H    +      D     + QL T  P  M++
Sbjct: 193 APEVILGMGYKENVDIWSVGCIMGEMVCH-KILFPGRDYIDQWNKVIEQLGTPCPAFMKK 251
Query: 484 L---VAKLLENDPS 494
           L   V   +EN P 
Sbjct: 252 LQPTVRNYVENRPK 265

>pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine Inhibitor Length = 272

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 20/153 (13%)
Query: 347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSA 406
           T+L   +++ +  R  HRD+K +N+LL      +  +L I +FG S           SS 
Sbjct: 118 TELANALSYCHSKRVIHRDIKPENLLL-----GSAGELKIANFGWSVHAP-------SSR 165
Query: 407 DIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE 466
              L G +  + PE+      +   ++  K D W+ G + YE      PF  +     Y+
Sbjct: 166 RTTLCGTLDYLPPEM------IEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYK 219
Query: 467 VNALPQLN--TNVPEVMRRLVAKLLENDPSDRP 497
             +  +      V E  R L+++LL+++PS RP
Sbjct: 220 RISRVEFTFPDFVTEGARDLISRLLKHNPSQRP 252

>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 312

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 21/182 (11%)
Query: 323 NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 382
           N  L ++LR+   Q ++ + V +   +  G+ +L      HRDL + NIL+     N+  
Sbjct: 118 NGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLADMNYVHRDLAARNILV-----NSNL 172
Query: 383 QLVITDFG-SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY-SKSDAW 440
              ++DFG S +         Y+SA   LGG +      +    P    +  + S SD W
Sbjct: 173 VCKVSDFGLSRFLEDDTSDPTYTSA---LGGKIP-----IRWTAPEAIQYRKFTSASDVW 224
Query: 441 TAGTVAYEIFGHDNPFYQSARNTDYEVNALPQ-----LNTNVPEVMRRLVAKLLENDPSD 495
           + G V +E+  +    Y    N D  +NA+ Q        + P  + +L+    + D + 
Sbjct: 225 SYGIVMWEVMSYGERPYWDMTNQDV-INAIEQDYRLPPPMDCPSALHQLMLDCWQKDRNH 283
Query: 496 RP 497
           RP
Sbjct: 284 RP 285

>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a Length = 282

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 20/154 (12%)
Query: 346 FTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSS 405
            T+L   +++ +  R  HRD+K +N+LL      +  +L I +FG S           SS
Sbjct: 116 ITELANALSYCHSKRVIHRDIKPENLLL-----GSAGELKIANFGWSVHAP-------SS 163
Query: 406 ADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY 465
               L G +  + PE+      +   ++  K D W+ G + YE      PF  +     Y
Sbjct: 164 RRTTLCGTLDYLPPEM------IEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETY 217
Query: 466 EVNALPQLN--TNVPEVMRRLVAKLLENDPSDRP 497
           +  +  +      V E  R L+++LL+++PS RP
Sbjct: 218 KRISRVEFTFPDFVTEGARDLISRLLKHNPSQRP 251

>pdb|3HNG|A Chain A, Crystal Structure Of Vegfr1 In Complex With N-(4-chlorophenyl)-2- ((pyridin-4-ylmethyl)amino)benzamide Length = 360

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 93/209 (44%), Gaps = 25/209 (11%)
Query: 306 TGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRD 365
           + G+  + SL  + ++ ++D   + +E    ++M + +    Q+  G+  L+  +  HRD
Sbjct: 170 SSGFQEDKSLSDVEEEEDSD--GFYKE---PITMEDLISYSFQVARGMEFLSSRKCIHRD 224
Query: 366 LKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALAT 425
           L + NILL  SE+N    + I DFG +          Y + D    G+  L  P   +A 
Sbjct: 225 LAARNILL--SENNV---VKICDFGLARD-------IYKNPDYVRKGDTRL--PLKWMAP 270
Query: 426 PGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTDYEVNALPQLNTNVPEV---- 480
             +F  +  +KSD W+ G + +EIF    +P+     + D+       +    PE     
Sbjct: 271 ESIFDKIYSTKSDVWSYGVLLWEIFSLGGSPYPGVQMDEDFCSRLREGMRMRAPEYSTPE 330
Query: 481 MRRLVAKLLENDPSDRPS-AELAATVCQL 508
           + +++      DP +RP  AEL   +  L
Sbjct: 331 IYQIMLDCWHRDPKERPRFAELVEKLGDL 359

>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii (Tgcdpk1) Length = 484

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 71/166 (42%), Gaps = 25/166 (15%)
Query: 345 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYS 404
           +  Q+L G+T+++ ++  HRDLK +N+LL+    +    + I DFG S   ++   M+  
Sbjct: 131 IIRQVLSGITYMHKNKIVHRDLKPENLLLESKSKD--ANIRIIDFGLSTHFEASKKMK-- 186
Query: 405 SADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPF-------- 456
               +  G    +APEV   T          K D W+ G + Y +     PF        
Sbjct: 187 ----DKIGTAYYIAPEVLHGTYD-------EKCDVWSTGVILYILLSGCPPFNGANEYDI 235
Query: 457 YQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA 502
            +      Y    LPQ    V E  + L+ K+L   PS R SA  A
Sbjct: 236 LKKVEKGKYTFE-LPQWK-KVSESAKDLIRKMLTYVPSMRISARDA 279

>pdb|2IWI|A Chain A, Crystal Structure Of The Human Pim2 In Complex With A Ruthenium Organometallic Ligand Ru1 Length = 312

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 74/178 (41%), Gaps = 25/178 (14%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           DL +Y+ E+   L        F Q++  + H +     HRD+K +NIL+D      C +L
Sbjct: 125 DLFDYITEK-GPLGEGPSRCFFGQVVAAIQHCHSRGVVHRDIKDENILIDLR--RGCAKL 181
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDA--WTA 442
           +  DFGS        ++ +     +  G      PE         S   Y    A  W+ 
Sbjct: 182 I--DFGSG-------ALLHDEPYTDFDGTRVYSPPE-------WISRHQYHALPATVWSL 225
Query: 443 GTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
           G + Y++   D PF +     + E++    ++ +   ++RR +A      PS RPS E
Sbjct: 226 GILLYDMVCGDIPFERDQEILEAELHFPAHVSPDCCALIRRCLAP----KPSSRPSLE 279

>pdb|3ELJ|A Chain A, Jnk1 Complexed With A Bis-Anilino-Pyrrolopyrimidine Inhibitor Length = 369

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 80/194 (41%), Gaps = 44/194 (22%)
Query: 314 SLFILMKKYNTDLRNYLRERCAQLSM---HERV-LLFTQLLEGVTHLNMHRTAHRDLKSD 369
            ++I+M+  + +L       C  + M   HER+  L  Q+L G+ HL+     HRDLK  
Sbjct: 108 DVYIVMELMDANL-------CQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPS 160
Query: 370 NILL--DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVA---LA 424
           NI++  DC+       L I DFG + T                 G   +M P V      
Sbjct: 161 NIVVKSDCT-------LKILDFGLART----------------AGTSFMMTPYVVTRYYR 197
Query: 425 TPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRR 483
            P +   + Y ++ D W+ G +  E+  H    +      D     + QL T  PE M++
Sbjct: 198 APEVILGMGYKENVDLWSVGCIMGEMVCH-KILFPGRDYIDQWNKVIEQLGTPCPEFMKK 256
Query: 484 L---VAKLLENDPS 494
           L   V   +EN P 
Sbjct: 257 LQPTVRTYVENRPK 270

>pdb|2XS0|A Chain A, Linear Binding Motifs For Jnk And For Calcineurin Antagonistically Control The Nuclear Shuttling Of Nfat4 Length = 386

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 81/191 (42%), Gaps = 38/191 (19%)
Query: 314 SLFILMKKYNTDLRNYLRERCAQLSM---HERV-LLFTQLLEGVTHLNMHRTAHRDLKSD 369
            ++I+M+  + +L       C  + M   HER+  L  Q+L G+ HL+     HRDLK  
Sbjct: 105 DVYIVMELMDANL-------CQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPS 157
Query: 370 NILL--DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG 427
           NI++  DC+       L I DFG + T  +   M      +         APEV L    
Sbjct: 158 NIVVKSDCT-------LKILDFGLARTAGTSFMM------VPFVVTRYYRAPEVILG--- 201
Query: 428 LFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRL-- 484
               + Y ++ D W+ G +  E+       +    + D     + QL T  PE M++L  
Sbjct: 202 ----MGYKENVDIWSVGCIMGEMI-KGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQP 256
Query: 485 -VAKLLENDPS 494
            V   +EN P 
Sbjct: 257 TVRTYVENRPK 267

>pdb|2OK1|A Chain A, Crystal Structure Of Jnk3 Bound To N-Benzyl-4-(4-(3- Chlorophenyl)-1h-Pyrazol-3-Yl)-1h-Pyrrole-2-Carboxamide Length = 365

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 71/174 (40%), Gaps = 37/174 (21%)
Query: 334 CAQLSM---HERV-LLFTQLLEGVTHLNMHRTAHRDLKSDNILL--DCSEDNTCPQLVIT 387
           C  + M   HER+  L  Q+L G+ HL+     HRDLK  NI++  DC+       L I 
Sbjct: 117 CQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCT-------LKIL 169
Query: 388 DFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVA---LATPGLFSFVNYSKS-DAWTAG 443
           DFG + T                 G   +M P V       P +   + Y ++ D W+ G
Sbjct: 170 DFGLART----------------AGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 213
Query: 444 TVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRL---VAKLLENDPS 494
            +  E+  H    +      D     + QL T  PE M++L   V   +EN P 
Sbjct: 214 CIMGEMVRH-KILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPK 266

>pdb|1PMN|A Chain A, Crystal Structure Of Jnk3 In Complex With An Imidazole- Pyrimidine Inhibitor Length = 364

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 71/174 (40%), Gaps = 37/174 (21%)
Query: 334 CAQLSM---HERV-LLFTQLLEGVTHLNMHRTAHRDLKSDNILL--DCSEDNTCPQLVIT 387
           C  + M   HER+  L  Q+L G+ HL+     HRDLK  NI++  DC+       L I 
Sbjct: 117 CQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCT-------LKIL 169
Query: 388 DFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVA---LATPGLFSFVNYSKS-DAWTAG 443
           DFG + T                 G   +M P V       P +   + Y ++ D W+ G
Sbjct: 170 DFGLART----------------AGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 213
Query: 444 TVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRL---VAKLLENDPS 494
            +  E+  H    +      D     + QL T  PE M++L   V   +EN P 
Sbjct: 214 CIMGEMVRH-KILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPK 266

>pdb|2B1P|A Chain A, Inhibitor Complex Of Jnk3 Length = 355

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 71/174 (40%), Gaps = 37/174 (21%)
Query: 334 CAQLSM---HERV-LLFTQLLEGVTHLNMHRTAHRDLKSDNILL--DCSEDNTCPQLVIT 387
           C  + M   HER+  L  Q+L G+ HL+     HRDLK  NI++  DC+       L I 
Sbjct: 109 CQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCT-------LKIL 161
Query: 388 DFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVA---LATPGLFSFVNYSKS-DAWTAG 443
           DFG + T                 G   +M P V       P +   + Y ++ D W+ G
Sbjct: 162 DFGLART----------------AGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 205
Query: 444 TVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRL---VAKLLENDPS 494
            +  E+  H    +      D     + QL T  PE M++L   V   +EN P 
Sbjct: 206 CIMGEMVRH-KILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPK 258

>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole Inhibitor Length = 291

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 80/182 (43%), Gaps = 21/182 (11%)
Query: 323 NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 382
           N  L ++LR    Q ++ + V +   +  G+ +L      HRDL + NIL+     N+  
Sbjct: 99  NGALDSFLRLNDGQFTVIQLVGMLRGIASGMRYLAEMSYVHRDLAARNILV-----NSNL 153
Query: 383 QLVITDFG-SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY-SKSDAW 440
              ++DFG S +  ++     Y+S+   LGG +      +    P   +F  + S SDAW
Sbjct: 154 VCKVSDFGLSRFLEENSSDPTYTSS---LGGKIP-----IRWTAPEAIAFRKFTSASDAW 205
Query: 441 TAGTVAYEIFGHDNPFYQSARNTDYEVNALPQ-----LNTNVPEVMRRLVAKLLENDPSD 495
           + G V +E+       Y    N D  +NA+ Q        + P  + +L+    + D + 
Sbjct: 206 SYGIVMWEVMSFGERPYWDMSNQDV-INAIEQDYRLPPPPDCPTSLHQLMLDCWQKDRNA 264
Query: 496 RP 497
           RP
Sbjct: 265 RP 266

>pdb|3PTG|A Chain A, Design And Synthesis Of A Novel, Orally Efficacious Tri-Substituted Thiophene Based Jnk Inhibitor Length = 363

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 71/174 (40%), Gaps = 37/174 (21%)
Query: 334 CAQLSM---HERV-LLFTQLLEGVTHLNMHRTAHRDLKSDNILL--DCSEDNTCPQLVIT 387
           C  + M   HER+  L  Q+L G+ HL+     HRDLK  NI++  DC+       L I 
Sbjct: 116 CQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCT-------LKIL 168
Query: 388 DFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVA---LATPGLFSFVNYSKS-DAWTAG 443
           DFG + T                 G   +M P V       P +   + Y ++ D W+ G
Sbjct: 169 DFGLART----------------AGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 212
Query: 444 TVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRL---VAKLLENDPS 494
            +  E+  H    +      D     + QL T  PE M++L   V   +EN P 
Sbjct: 213 CIMGEMVRH-KILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPK 265

>pdb|4H36|A Chain A, Crystal Structure Of Jnk3 In Complex With Atf2 Peptide Length = 356

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 71/174 (40%), Gaps = 37/174 (21%)
Query: 334 CAQLSM---HERV-LLFTQLLEGVTHLNMHRTAHRDLKSDNILL--DCSEDNTCPQLVIT 387
           C  + M   HER+  L  Q+L G+ HL+     HRDLK  NI++  DC+       L I 
Sbjct: 110 CQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCT-------LKIL 162
Query: 388 DFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVA---LATPGLFSFVNYSKS-DAWTAG 443
           DFG + T                 G   +M P V       P +   + Y ++ D W+ G
Sbjct: 163 DFGLART----------------AGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 206
Query: 444 TVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRL---VAKLLENDPS 494
            +  E+  H    +      D     + QL T  PE M++L   V   +EN P 
Sbjct: 207 CIMGEMVRH-KILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPK 259

>pdb|3OXI|A Chain A, Design And Synthesis Of Disubstituted Thiophene And Thiazole Based Inhibitors Of Jnk For The Treatment Of Neurodegenerative Diseases Length = 362

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 71/174 (40%), Gaps = 37/174 (21%)
Query: 334 CAQLSM---HERV-LLFTQLLEGVTHLNMHRTAHRDLKSDNILL--DCSEDNTCPQLVIT 387
           C  + M   HER+  L  Q+L G+ HL+     HRDLK  NI++  DC+       L I 
Sbjct: 115 CQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCT-------LKIL 167
Query: 388 DFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVA---LATPGLFSFVNYSKS-DAWTAG 443
           DFG + T                 G   +M P V       P +   + Y ++ D W+ G
Sbjct: 168 DFGLART----------------AGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 211
Query: 444 TVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRL---VAKLLENDPS 494
            +  E+  H    +      D     + QL T  PE M++L   V   +EN P 
Sbjct: 212 CIMGEMVRH-KILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPK 264

>pdb|2O0U|A Chain A, Crystal Structure Of Human Jnk3 Complexed With N-{3-Cyano-6-[3-(1- Piperidinyl)propanoyl]-4,5,6,7-Tetrahydrothieno[2, 3-C]pyridin-2-Yl}- 1-Naphthalenecarboxamide Length = 364

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 71/174 (40%), Gaps = 37/174 (21%)
Query: 334 CAQLSM---HERV-LLFTQLLEGVTHLNMHRTAHRDLKSDNILL--DCSEDNTCPQLVIT 387
           C  + M   HER+  L  Q+L G+ HL+     HRDLK  NI++  DC+       L I 
Sbjct: 116 CQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCT-------LKIL 168
Query: 388 DFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVA---LATPGLFSFVNYSKS-DAWTAG 443
           DFG + T                 G   +M P V       P +   + Y ++ D W+ G
Sbjct: 169 DFGLART----------------AGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 212
Query: 444 TVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRL---VAKLLENDPS 494
            +  E+  H    +      D     + QL T  PE M++L   V   +EN P 
Sbjct: 213 CIMGEMVRH-KILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPK 265

>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain From D. Discoideum Bound To Appcp Length = 287

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 74/181 (40%), Gaps = 20/181 (11%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHR--TAHRDLKSDNILLDCSEDNTCP 382
           DL + L ++   +    ++ L   +  G+ ++        HRDL+S NI L   ++N   
Sbjct: 107 DLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSLDENAPV 166
Query: 383 QLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTA 442
              + DFG+S  +   +S         L GN   MAPE   A    ++     K+D ++ 
Sbjct: 167 CAKVADFGTSQQSVHSVS--------GLLGNFQWMAPETIGAEEESYT----EKADTYSF 214
Query: 443 GTVAYEIFGHDNPFYQSARNTDYEVNAL------PQLNTNVPEVMRRLVAKLLENDPSDR 496
             + Y I   + PF + +      +N +      P +  + P  +R ++      DP  R
Sbjct: 215 AMILYTILTGEGPFDEYSYGKIKFINMIREEGLRPTIPEDCPPRLRNVIELCWSGDPKKR 274
Query: 497 P 497
           P
Sbjct: 275 P 275

>pdb|2JED|A Chain A, The Crystal Structure Of The Kinase Domain Of The Protein Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a Resolution. Length = 352

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 78/188 (41%), Gaps = 24/188 (12%)
Query: 314 SLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
           +LF +M+  N     Y  + C +  +        +++ G+  L+     +RDLK DNILL
Sbjct: 93  NLFFVMEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLHSKGIVYRDLKLDNILL 152
Query: 374 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN 433
           D         + I DFG    N  G      +   E  G    +APE+ L          
Sbjct: 153 DKD-----GHIKIADFGMCKENMLG-----DAKTNEFCGTPDYIAPEILLGQ-------K 195
Query: 434 YSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRR----LVAKL 488
           Y+ S D W+ G + YE+    +PF+   ++ +   +++   N   P  + +    L+ KL
Sbjct: 196 YNHSVDWWSFGVLLYEMLIGQSPFH--GQDEEELFHSIRMDNPFYPRWLEKEAKDLLVKL 253
Query: 489 LENDPSDR 496
              +P  R
Sbjct: 254 FVREPEKR 261

>pdb|3PZE|A Chain A, Jnk1 In Complex With Inhibitor Length = 358

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 80/194 (41%), Gaps = 44/194 (22%)
Query: 314 SLFILMKKYNTDLRNYLRERCAQLSM---HERV-LLFTQLLEGVTHLNMHRTAHRDLKSD 369
            ++I+M+  + +L       C  + M   HER+  L  Q+L G+ HL+     HRDLK  
Sbjct: 97  DVYIVMELMDANL-------CQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPS 149
Query: 370 NILL--DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVA---LA 424
           NI++  DC+       L I DFG + T                 G   +M P V      
Sbjct: 150 NIVVKSDCT-------LKILDFGLART----------------AGTSFMMTPYVVTRYYR 186
Query: 425 TPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRR 483
            P +   + Y ++ D W+ G +  E+  H    +      D     + QL T  PE M++
Sbjct: 187 APEVILGMGYKENVDLWSVGCIMGEMVCH-KILFPGRDYIDQWNKVIEQLGTPCPEFMKK 245
Query: 484 L---VAKLLENDPS 494
           L   V   +EN P 
Sbjct: 246 LQPTVRTYVENRPK 259

>pdb|2EXC|X Chain X, Inhibitor Complex Of Jnk3 Length = 356

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 71/174 (40%), Gaps = 37/174 (21%)
Query: 334 CAQLSM---HERV-LLFTQLLEGVTHLNMHRTAHRDLKSDNILL--DCSEDNTCPQLVIT 387
           C  + M   HER+  L  Q+L G+ HL+     HRDLK  NI++  DC+       L I 
Sbjct: 110 CQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCT-------LKIL 162
Query: 388 DFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVA---LATPGLFSFVNYSKS-DAWTAG 443
           DFG + T                 G   +M P V       P +   + Y ++ D W+ G
Sbjct: 163 DFGLART----------------AGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 206
Query: 444 TVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRL---VAKLLENDPS 494
            +  E+  H    +      D     + QL T  PE M++L   V   +EN P 
Sbjct: 207 CIMGEMVRH-KILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPK 259

>pdb|1JNK|A Chain A, The C-Jun N-Terminal Kinase (Jnk3s) Complexed With Mgamp-Pnp Length = 423

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 71/174 (40%), Gaps = 37/174 (21%)
Query: 334 CAQLSM---HERV-LLFTQLLEGVTHLNMHRTAHRDLKSDNILL--DCSEDNTCPQLVIT 387
           C  + M   HER+  L  Q+L G+ HL+     HRDLK  NI++  DC+       L I 
Sbjct: 154 CQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCT-------LKIL 206
Query: 388 DFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVA---LATPGLFSFVNYSKS-DAWTAG 443
           DFG + T                 G   +M P V       P +   + Y ++ D W+ G
Sbjct: 207 DFGLART----------------AGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 250
Query: 444 TVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRL---VAKLLENDPS 494
            +  E+  H    +      D     + QL T  PE M++L   V   +EN P 
Sbjct: 251 CIMGEMVRH-KILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPK 303

>pdb|2WQM|A Chain A, Structure Of Apo Human Nek7 Length = 310

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 66/159 (41%), Gaps = 22/159 (13%)
Query: 346 FTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSS 405
           F QL   + H++  R  HRD+K  N+ +  +       L +  F SS T          +
Sbjct: 142 FVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKT----------T 191
Query: 406 ADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY 465
           A   L G    M+PE  +   G ++F    KSD W+ G + YE+    +PFY    N   
Sbjct: 192 AAHSLVGTPYYMSPE-RIHENG-YNF----KSDIWSLGCLLYEMAALQSPFYGDKMNLYS 245
Query: 466 EVNALPQLN------TNVPEVMRRLVAKLLENDPSDRPS 498
               + Q +       +  E +R+LV   +  DP  RP 
Sbjct: 246 LCKKIEQCDYPPLPSDHYSEELRQLVNMCINPDPEKRPD 284

>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 73/181 (40%), Gaps = 20/181 (11%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHR--TAHRDLKSDNILLDCSEDNTCP 382
           DL + L ++   +    ++ L   +  G+ ++        HRDL+S NI L   ++N   
Sbjct: 107 DLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSLDENAPV 166
Query: 383 QLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTA 442
              + DF        GLS Q   +   L GN   MAPE   A    ++     K+D ++ 
Sbjct: 167 CAKVADF--------GLSQQSVHSVSGLLGNFQWMAPETIGAEEESYT----EKADTYSF 214
Query: 443 GTVAYEIFGHDNPFYQSARNTDYEVNAL------PQLNTNVPEVMRRLVAKLLENDPSDR 496
             + Y I   + PF + +      +N +      P +  + P  +R ++      DP  R
Sbjct: 215 AMILYTILTGEGPFDEYSYGKIKFINMIREEGLRPTIPEDCPPRLRNVIELCWSGDPKKR 274
Query: 497 P 497
           P
Sbjct: 275 P 275

>pdb|4AS0|A Chain A, Cyclometalated Phthalimides As Protein Kinase Inhibitors Length = 273

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 25/178 (14%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           DL +++ ER A      R   F Q+LE V H +     HRD+K +NIL+D +      +L
Sbjct: 96  DLFDFITERGALQEELARSF-FWQVLEAVRHCHNCGVLHRDIKDENILIDLNRG----EL 150
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDA--WTA 442
            + DFGS    K  +   +    +               + P    +  Y    A  W+ 
Sbjct: 151 KLIDFGSGALLKDTVYTDFDGTRV--------------YSPPEWIRYHRYHGRSAAVWSL 196
Query: 443 GTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
           G + Y++   D PF         +V    ++++    ++R  +A      PSDRP+ E
Sbjct: 197 GILLYDMVCGDIPFEHDEEIIGGQVFFRQRVSSECQHLIRWCLAL----RPSDRPTFE 250

>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420 Length = 504

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 69/166 (41%), Gaps = 25/166 (15%)
Query: 345 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYS 404
           +  Q+L G+ +L+ H   HRD+K +NILL+    N+   + I DFG S    S  S  Y 
Sbjct: 151 IMKQILSGICYLHKHNIVHRDIKPENILLE--NKNSLLNIKIVDFGLS----SFFSKDYK 204
Query: 405 SADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD 464
             D    G    +APEV              K D W+ G + Y +     PF    +N  
Sbjct: 205 LRD--RLGTAYYIAPEVLKKKYN-------EKCDVWSCGVIMYILLCGYPPF--GGQNDQ 253
Query: 465 YEVNALPQLN--------TNVPEVMRRLVAKLLENDPSDRPSAELA 502
             +  + +           N+ +  + L+  +L  D + R +AE A
Sbjct: 254 DIIKKVEKGKYYFDFNDWKNISDEAKELIKLMLTYDYNKRCTAEEA 299

>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From Toxoplasma Gondii, Tgme49.101440 Length = 507

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 71/166 (42%), Gaps = 25/166 (15%)
Query: 345 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYS 404
           +  Q+L G+T+++ ++  HRDLK +N+LL+    +    + I DFG S   ++   M+  
Sbjct: 154 IIRQVLSGITYMHKNKIVHRDLKPENLLLESKSKD--ANIRIIDFGLSTHFEASKKMK-- 209
Query: 405 SADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPF-------- 456
               +  G    +APEV   T          K D W+ G + Y +     PF        
Sbjct: 210 ----DKIGTAYYIAPEVLHGTYD-------EKCDVWSTGVILYILLSGCPPFNGANEYDI 258
Query: 457 YQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA 502
            +      Y    LPQ    V E  + L+ K+L   PS R SA  A
Sbjct: 259 LKKVEKGKYTFE-LPQWK-KVSESAKDLIRKMLTYVPSMRISARDA 302

>pdb|3TTJ|A Chain A, Crystal Structure Of Jnk3 Complexed With Cc-359, A Jnk Inhibitor For The Prevention Of Ischemia-Reperfusion Injury Length = 464

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 68/164 (41%), Gaps = 34/164 (20%)
Query: 340 HERV-LLFTQLLEGVTHLNMHRTAHRDLKSDNILL--DCSEDNTCPQLVITDFGSSYTNK 396
           HER+  L  Q+L G+ HL+     HRDLK  NI++  DC+       L I DFG + T  
Sbjct: 163 HERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCT-------LKILDFGLART-- 213
Query: 397 SGLSMQYSSADIELGGNVALMAPEVA---LATPGLFSFVNYSKS-DAWTAGTVAYEIFGH 452
                          G   +M P V       P +   + Y ++ D W+ G +  E+  H
Sbjct: 214 --------------AGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRH 259
Query: 453 DNPFYQSARNTDYEVNALPQLNTNVPEVMRRL---VAKLLENDP 493
               +      D     + QL T  PE M++L   V   +EN P
Sbjct: 260 -KILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRP 302

>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742a Triple Mutant Length = 373

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 82/189 (43%), Gaps = 21/189 (11%)
Query: 323 NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 382
           N  L ++LR+  AQ ++ + V +   +  G+ +L+     HRDL + NIL+     N+  
Sbjct: 130 NGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGAVHRDLAARNILI-----NSNL 184
Query: 383 QLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY-SKSDAWT 441
              ++DFG S   +      Y++     GG +      +   +P   ++  + S SD W+
Sbjct: 185 VCKVSDFGLSRVLEDDPEAAYTTR----GGKIP-----IRWTSPEAIAYRKFTSASDVWS 235
Query: 442 AGTVAYEIFGHDNPFYQSARNTDY-----EVNALPQLNTNVPEVMRRLVAKLLENDPSDR 496
            G V +E+  +    Y    N D      E   LP    + P  + +L+    + D ++R
Sbjct: 236 YGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRLPP-PMDCPAALYQLMLDCWQKDRNNR 294
Query: 497 PSAELAATV 505
           P  E   ++
Sbjct: 295 PKFEQIVSI 303

>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii, Tgme49_101440, In Presence Of Calcium Length = 508

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 71/166 (42%), Gaps = 25/166 (15%)
Query: 345 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYS 404
           +  Q+L G+T+++ ++  HRDLK +N+LL+    +    + I DFG S   ++   M+  
Sbjct: 155 IIRQVLSGITYMHKNKIVHRDLKPENLLLESKSKD--ANIRIIDFGLSTHFEASKKMK-- 210
Query: 405 SADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPF-------- 456
               +  G    +APEV   T          K D W+ G + Y +     PF        
Sbjct: 211 ----DKIGTAYYIAPEVLHGTYD-------EKCDVWSTGVILYILLSGCPPFNGANEYDI 259
Query: 457 YQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA 502
            +      Y    LPQ    V E  + L+ K+L   PS R SA  A
Sbjct: 260 LKKVEKGKYTFE-LPQWK-KVSESAKDLIRKMLTYVPSMRISARDA 303

>pdb|3CXW|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine Kinase (Pim1) In Complex With A Consensus Peptide And A Beta Carboline Ligand I Length = 314

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 25/178 (14%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           DL +++ ER A      R   F Q+LE V H +     HRD+K +NIL+D +      +L
Sbjct: 129 DLFDFITERGALQEELARSF-FWQVLEAVRHCHNCGVLHRDIKDENILIDLNRG----EL 183
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDA--WTA 442
            + DFGS    K  +   +    +               + P    +  Y    A  W+ 
Sbjct: 184 KLIDFGSGALLKDTVYTDFDGTRV--------------YSPPEWIRYHRYHGRSAAVWSL 229
Query: 443 GTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
           G + Y++   D PF         +V    ++++    ++R  +A      PSDRP+ E
Sbjct: 230 GILLYDMVCGDIPFEHDEEIIGGQVFFRQRVSSECQHLIRWCLAL----RPSDRPTFE 283

>pdb|2J2I|B Chain B, Crystal Structure Of The Humab Pim1 In Complex With Ly333531 Length = 312

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 25/178 (14%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           DL +++ ER A      R   F Q+LE V H +     HRD+K +NIL+D +      +L
Sbjct: 128 DLFDFITERGALQEELARSF-FWQVLEAVRHCHNCGVLHRDIKDENILIDLNRG----EL 182
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDA--WTA 442
            + DFGS    K  +   +    +               + P    +  Y    A  W+ 
Sbjct: 183 KLIDFGSGALLKDTVYTDFDGTRV--------------YSPPEWIRYHRYHGRSAAVWSL 228
Query: 443 GTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
           G + Y++   D PF         +V    ++++    ++R  +A      PSDRP+ E
Sbjct: 229 GILLYDMVCGDIPFEHDEEIIGGQVFFRQRVSSECQHLIRWCLAL----RPSDRPTFE 282

>pdb|2X4F|A Chain A, The Crystal Structure Of The Human Myosin Light Chain Kinase Loc340156. Length = 373

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 79/186 (42%), Gaps = 33/186 (17%)
Query: 343 VLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG--SSYTNKSGLS 400
           +L   Q+ EG+ H++     H DLK +NIL  C  +    Q+ I DFG    Y  +  L 
Sbjct: 190 ILFMKQICEGIRHMHQMYILHLDLKPENIL--CV-NRDAKQIKIIDFGLARRYKPREKLK 246
Query: 401 MQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSA 460
           + +        G    +APEV       + FV++  +D W+ G +AY +    +PF    
Sbjct: 247 VNF--------GTPEFLAPEVV-----NYDFVSFP-TDMWSVGVIAYMLLSGLSPFL--G 290
Query: 461 RNTDYEVNAL--------PQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWA 512
            N    +N +         +   ++ E  +  ++KLL  + S R SA  A      + W 
Sbjct: 291 DNDAETLNNILACRWDLEDEEFQDISEEAKEFISKLLIKEKSWRISASEALK----HPWL 346
Query: 513 PKHWLY 518
             H L+
Sbjct: 347 SDHKLH 352

>pdb|1YXS|A Chain A, Crystal Structure Of Kinase Pim1 With P123m Mutation Length = 293

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 81/196 (41%), Gaps = 27/196 (13%)
Query: 309 YGRNMSLFILMKKYN--TDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDL 366
           + R  S  +++++     DL +++ ER A      R   F Q+LE V H +     HRD+
Sbjct: 82  FERPDSFVLILERMEPVQDLFDFITERGALQEELARSF-FWQVLEAVRHCHNCGVLHRDI 140
Query: 367 KSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP 426
           K +NIL+D +      +L + DFGS    K  +   +    +               + P
Sbjct: 141 KDENILIDLNRG----ELKLIDFGSGALLKDTVYTDFDGTRV--------------YSPP 182
Query: 427 GLFSFVNYSKSDA--WTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRL 484
               +  Y    A  W+ G + Y++   D PF         +V    ++++    ++R  
Sbjct: 183 EWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIRWC 242
Query: 485 VAKLLENDPSDRPSAE 500
           +A      PSDRP+ E
Sbjct: 243 LAL----RPSDRPTFE 254

>pdb|3TAC|A Chain A, Crystal Structure Of The Liprin-AlphaCASK COMPLEX Length = 361

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 30/160 (18%)
Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
           Q+LE + + + +   HRD+K   +LL  S++N+ P + +  F        G+++Q   + 
Sbjct: 140 QILEALRYCHDNNIIHRDVKPHCVLL-ASKENSAP-VKLGGF--------GVAIQLGESG 189
Query: 408 IELGGNVA---LMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSAR-- 461
           +  GG V     MAPEV    P       Y K  D W  G + + +     PFY +    
Sbjct: 190 LVAGGRVGTPHFMAPEVVKREP-------YGKPVDVWGCGVILFILLSGCLPFYGTKERL 242
Query: 462 -----NTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDR 496
                   Y++N  P+  +++ E  + LV ++L  DP++R
Sbjct: 243 FEGIIKGKYKMN--PRQWSHISESAKDLVRRMLMLDPAER 280

>pdb|3C4E|A Chain A, Pim-1 Kinase Domain In Complex With 3-Aminophenyl-7- Azaindole Length = 273

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 25/178 (14%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           DL +++ ER A      R   F Q+LE V H +     HRD+K +NIL+D +      +L
Sbjct: 96  DLFDFITERGALQEELARSF-FWQVLEAVRHCHNCGVLHRDIKDENILIDLNRG----EL 150
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDA--WTA 442
            + DFGS    K  +   +    +               + P    +  Y    A  W+ 
Sbjct: 151 KLIDFGSGALLKDTVYTDFDGTRV--------------YSPPEWIRYHRYHGRSAAVWSL 196
Query: 443 GTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
           G + Y++   D PF         +V    ++++    ++R  +A      PSDRP+ E
Sbjct: 197 GILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIRWCLAL----RPSDRPTFE 250

>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-Crd-Ig26) Length = 573

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 25/169 (14%)
Query: 336 QLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTN 395
           ++S  E V    Q+ +G+ H++ +   H DLK +NI+      N   +L + DFG +   
Sbjct: 251 KMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSN---ELKLIDFGLTAHL 307
Query: 396 KSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNP 455
               S++ ++      G     APEVA   P     V Y  +D W+ G ++Y +    +P
Sbjct: 308 DPKQSVKVTT------GTAEFAAPEVAEGKP-----VGYY-TDMWSVGVLSYILLSGLSP 355
Query: 456 FYQSARNTDYEVNALPQLNTN--------VPEVMRRLVAKLLENDPSDR 496
           F     N D  +  +   + N        + E  +  + KLL  DP+ R
Sbjct: 356 F--GGENDDETLRNVKSCDWNMDDSAFSGISEDGKDFIRKLLLADPNTR 402

>pdb|2ZV2|A Chain A, Crystal Structure Of Human CalciumCALMODULIN-Dependent Protein Kinase Kinase 2, Beta, Camkk2 Kinase Domain In Complex With Sto-609 Length = 298

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 71/165 (43%), Gaps = 19/165 (11%)
Query: 337 LSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNK 396
           LS  +    F  L++G+ +L+  +  HRD+K  N+L+   ED     + I DFG S   K
Sbjct: 134 LSEDQARFYFQDLIKGIEYLHYQKIIHRDIKPSNLLV--GEDG---HIKIADFGVSNEFK 188
Query: 397 SGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPF 456
              ++  ++      G  A MAPE    T  +FS       D W  G   Y       PF
Sbjct: 189 GSDALLSNTV-----GTPAFMAPESLSETRKIFSG---KALDVWAMGVTLYCFVFGQCPF 240
Query: 457 YQS---ARNTDYEVNAL--PQLNTNVPEVMRRLVAKLLENDPSDR 496
                   ++  +  AL  P    ++ E ++ L+ ++L+ +P  R
Sbjct: 241 MDERIMCLHSKIKSQALEFPD-QPDIAEDLKDLITRMLDKNPESR 284

>pdb|2BIL|B Chain B, The Human Protein Kinase Pim1 In Complex With Its Consensus Peptide Pimtide Length = 313

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 25/178 (14%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           DL +++ ER A      R   F Q+LE V H +     HRD+K +NIL+D +      +L
Sbjct: 128 DLFDFITERGALQEELARSF-FWQVLEAVRHCHNCGVLHRDIKDENILIDLNRG----EL 182
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDA--WTA 442
            + DFGS    K  +   +    +               + P    +  Y    A  W+ 
Sbjct: 183 KLIDFGSGALLKDTVYTDFDGTRV--------------YSPPEWIRYHRYHGRSAAVWSL 228
Query: 443 GTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
           G + Y++   D PF         +V    ++++    ++R  +A      PSDRP+ E
Sbjct: 229 GILLYDMVCGDIPFEHDEEIIGGQVFFRQRVSSECQHLIRWCLAL----RPSDRPTFE 282

>pdb|3JPV|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine Kinase (Pim1) In Complex With A Consensus Peptide And A Pyrrolo[2,3- A]carbazole Ligand Length = 313

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 25/178 (14%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           DL +++ ER A      R   F Q+LE V H +     HRD+K +NIL+D +      +L
Sbjct: 129 DLFDFITERGALQEELARSF-FWQVLEAVRHCHNCGVLHRDIKDENILIDLNRG----EL 183
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDA--WTA 442
            + DFGS    K  +   +    +               + P    +  Y    A  W+ 
Sbjct: 184 KLIDFGSGALLKDTVYTDFDGTRV--------------YSPPEWIRYHRYHGRSAAVWSL 229
Query: 443 GTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
           G + Y++   D PF         +V    ++++    ++R  +A      PSDRP+ E
Sbjct: 230 GILLYDMVCGDIPFEHDEEIIGGQVFFRQRVSSECQHLIRWCLAL----RPSDRPTFE 283

>pdb|3P23|A Chain A, Crystal Structure Of The Human Kinase And Rnase Domains In Complex With Adp Length = 432

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 85/192 (44%), Gaps = 13/192 (6%)
Query: 316 FILMKKYNTDLRNYLRER-CAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLD 374
           +I ++     L+ Y+ ++  A L + E + L  Q   G+ HL+     HRDLK  NIL+ 
Sbjct: 94  YIAIELCAATLQEYVEQKDFAHLGL-EPITLLQQTTSGLAHLHSLNIVHRDLKPHNILIS 152
Query: 375 CSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY 434
               +   + +I+DFG     K  +     S    + G    +APE  + +        Y
Sbjct: 153 MPNAHGKIKAMISDFG--LCKKLAVGRHSFSRRSGVPGTEGWIAPE--MLSEDCKENPTY 208
Query: 435 SKSDAWTAGTVAYEIFGH-DNPFYQSARNTDYEVNALPQLNTNVPE-----VMRRLVAKL 488
           +  D ++AG V Y +     +PF +S +     +     L+   PE     + R L+ K+
Sbjct: 209 T-VDIFSAGCVFYYVISEGSHPFGKSLQRQANILLGACSLDCLHPEKHEDVIARELIEKM 267
Query: 489 LENDPSDRPSAE 500
           +  DP  RPSA+
Sbjct: 268 IAMDPQKRPSAK 279

>pdb|4ALV|A Chain A, Benzofuropyrimidinone Inhibitors Of Pim-1 Length = 328

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 25/178 (14%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           DL +++ ER A      R   F Q+LE V H +     HRD+K +NIL+D +      +L
Sbjct: 143 DLFDFITERGALQEELARSF-FWQVLEAVRHCHNCGVLHRDIKDENILIDLNRG----EL 197
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDA--WTA 442
            + DFGS    K  +   +    +               + P    +  Y    A  W+ 
Sbjct: 198 KLIDFGSGALLKDTVYTDFDGTRV--------------YSPPEWIRYHRYHGRSAAVWSL 243
Query: 443 GTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
           G + Y++   D PF         +V    ++++    ++R  +A      PSDRP+ E
Sbjct: 244 GILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIRWCLAL----RPSDRPTFE 297

>pdb|3R00|A Chain A, The Discovery Of Novel Benzofuran-2-Carboxylic Acids As Potent Pim-1 Inhibitors Length = 299

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 25/178 (14%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           DL +++ ER A      R   F Q+LE V H +     HRD+K +NIL+D +      +L
Sbjct: 101 DLFDFITERGALQEELARSF-FWQVLEAVRHCHNCGVLHRDIKDENILIDLNRG----EL 155
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDA--WTA 442
            + DFGS    K  +   +    +               + P    +  Y    A  W+ 
Sbjct: 156 KLIDFGSGALLKDTVYTDFDGTRV--------------YSPPEWIRYHRYHGRSAAVWSL 201
Query: 443 GTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
           G + Y++   D PF         +V    ++++    ++R  +A      PSDRP+ E
Sbjct: 202 GILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIRWCLAL----RPSDRPTFE 255

>pdb|4DTK|A Chain A, Novel And Selective Pan-Pim Kinase Inhibitor Length = 276

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 25/178 (14%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           DL +++ ER A      R   F Q+LE V H +     HRD+K +NIL+D +      +L
Sbjct: 99  DLFDFITERGALQEELARSF-FWQVLEAVRHCHNCGVLHRDIKDENILIDLNRG----EL 153
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDA--WTA 442
            + DFGS    K  +   +    +               + P    +  Y    A  W+ 
Sbjct: 154 KLIDFGSGALLKDTVYTDFDGTRV--------------YSPPEWIRYHRYHGRSAAVWSL 199
Query: 443 GTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
           G + Y++   D PF         +V    ++++    ++R  +A      PSDRP+ E
Sbjct: 200 GILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIRWCLAL----RPSDRPTFE 253

>pdb|2Y94|A Chain A, Structure Of An Active Form Of Mammalian Ampk Length = 476

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 16/122 (13%)
Query: 335 AQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYT 394
            +L   E   LF Q+L GV + + H   HRDLK +N+LLD   +       I DFG S  
Sbjct: 111 GRLDEKESRRLFQQILSGVDYCHRHMVVHRDLKPENVLLDAHMNAK-----IADFGLSNM 165
Query: 395 NKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDN 454
              G  ++ S       G+    APEV      L++     + D W++G + Y +     
Sbjct: 166 MSDGEFLRXSC------GSPNYAAPEVISGR--LYAG---PEVDIWSSGVILYALLCGTL 214
Query: 455 PF 456
           PF
Sbjct: 215 PF 216

>pdb|1XWS|A Chain A, Crystal Structure Of The Human Pim1 Kinase Domain Length = 313

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 25/178 (14%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           DL +++ ER A      R   F Q+LE V H +     HRD+K +NIL+D +      +L
Sbjct: 128 DLFDFITERGALQEELARSF-FWQVLEAVRHCHNCGVLHRDIKDENILIDLNRG----EL 182
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDA--WTA 442
            + DFGS    K  +   +    +               + P    +  Y    A  W+ 
Sbjct: 183 KLIDFGSGALLKDTVYTDFDGTRV--------------YSPPEWIRYHRYHGRSAAVWSL 228
Query: 443 GTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
           G + Y++   D PF         +V    ++++    ++R  +A      PSDRP+ E
Sbjct: 229 GILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIRWCLAL----RPSDRPTFE 282

>pdb|1YHS|A Chain A, Crystal Structure Of Pim-1 Bound To Staurosporine Length = 273

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 72/178 (40%), Gaps = 25/178 (14%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           DL +++ ER A      R   F Q+LE V H +     HRD+K +NIL+D +      +L
Sbjct: 96  DLFDFITERGALQEELARSF-FWQVLEAVRHCHNXGVLHRDIKDENILIDLNRG----EL 150
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDA--WTA 442
            + DFGS    K  +   +    +               + P    +  Y    A  W+ 
Sbjct: 151 KLIDFGSGALLKDTVYTDFDGTRV--------------YSPPEWIRYHRYHGRSAAVWSL 196
Query: 443 GTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
           G + Y++   D PF         +V    +++     ++R  +A      PSDRP+ E
Sbjct: 197 GILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSXECQHLIRWCLAL----RPSDRPTFE 250

>pdb|3QC9|A Chain A, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C DOUBLE MUTANT Complexed With Adp And Mg Length = 543

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 69/162 (42%), Gaps = 23/162 (14%)
Query: 342 RVLLFT-QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLS 400
           R + +T Q++ G+ HL+     +RDLK +N+LLD  +D     + I+D G +   K+G +
Sbjct: 290 RAIFYTAQIVSGLEHLHQRNIIYRDLKPENVLLD--DDGN---VRISDLGLAVELKAGQT 344
Query: 401 MQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFY--- 457
                A     G    MAPE+ L     FS V+Y     +  G   YE+     PF    
Sbjct: 345 KTKGYA-----GTPGFMAPELLLGEEYDFS-VDY-----FALGVTLYEMIAARGPFRARG 393
Query: 458 QSARNTDYEVNALPQLNT---NVPEVMRRLVAKLLENDPSDR 496
           +   N + +   L Q  T         +     LL+ DP  R
Sbjct: 394 EKVENKELKQRVLEQAVTYPDKFSPASKDFCEALLQKDPEKR 435

>pdb|2XJ0|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-4 From Crystallographic Fragment Screen Length = 301

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 25/178 (14%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           DL +++ ER A      R   F Q+LE V H +     HRD+K +NIL+D +      +L
Sbjct: 116 DLFDFITERGALQEELARSF-FWQVLEAVRHCHNCGVLHRDIKDENILIDLNRG----EL 170
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDA--WTA 442
            + DFGS    K  +   +    +               + P    +  Y    A  W+ 
Sbjct: 171 KLIDFGSGALLKDTVYTDFDGTRV--------------YSPPEWIRYHRYHGRSAAVWSL 216
Query: 443 GTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
           G + Y++   D PF         +V    ++++    ++R  +A      PSDRP+ E
Sbjct: 217 GILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIRWCLAL----RPSDRPTFE 270

>pdb|3A99|A Chain A, Structure Of Pim-1 Kinase Crystallized In The Presence Of P27kip1 Carboxy-Terminal Peptide Length = 320

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 25/178 (14%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           DL +++ ER A      R   F Q+LE V H +     HRD+K +NIL+D +      +L
Sbjct: 135 DLFDFITERGALQEELARSF-FWQVLEAVRHCHNCGVLHRDIKDENILIDLNRG----EL 189
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDA--WTA 442
            + DFGS    K  +   +    +               + P    +  Y    A  W+ 
Sbjct: 190 KLIDFGSGALLKDTVYTDFDGTRV--------------YSPPEWIRYHRYHGRSAAVWSL 235
Query: 443 GTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
           G + Y++   D PF         +V    ++++    ++R  +A      PSDRP+ E
Sbjct: 236 GILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIRWCLAL----RPSDRPTFE 289

>pdb|1UKH|A Chain A, Structural Basis For The Selective Inhibition Of Jnk1 By The Scaffolding Protein Jip1 And Sp600125 Length = 369

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 80/194 (41%), Gaps = 44/194 (22%)
Query: 314 SLFILMKKYNTDLRNYLRERCAQLSM---HERV-LLFTQLLEGVTHLNMHRTAHRDLKSD 369
            ++I+M+  + +L       C  + M   HER+  L  Q+L G+ HL+     HRDLK  
Sbjct: 103 DVYIVMELMDANL-------CQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPS 155
Query: 370 NILL--DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVA---LA 424
           NI++  DC+       L I DFG + T                 G   +M P V      
Sbjct: 156 NIVVKSDCT-------LKILDFGLART----------------AGTSFMMTPYVVTRYYR 192
Query: 425 TPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRR 483
            P +   + Y ++ D W+ G +  E+       +    + D     + QL T  PE M++
Sbjct: 193 APEVILGMGYKENVDIWSVGCIMGEMI-KGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKK 251
Query: 484 L---VAKLLENDPS 494
           L   V   +EN P 
Sbjct: 252 LQPTVRTYVENRPK 265

>pdb|3UIX|A Chain A, Crystal Structure Of Pim1 Kinase In Complex With Small Molecule Inhibitor Length = 298

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 25/178 (14%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           DL +++ ER A      R   F Q+LE V H +     HRD+K +NIL+D +      +L
Sbjct: 101 DLFDFITERGALQEELARSF-FWQVLEAVRHCHNCGVLHRDIKDENILIDLNRG----EL 155
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDA--WTA 442
            + DFGS    K  +   +    +               + P    +  Y    A  W+ 
Sbjct: 156 KLIDFGSGALLKDTVYTDFDGTRV--------------YSPPEWIRYHRYHGRSAAVWSL 201
Query: 443 GTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
           G + Y++   D PF         +V    ++++    ++R  +A      PSDRP+ E
Sbjct: 202 GILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIRWCLAL----RPSDRPTFE 255

>pdb|4ALU|A Chain A, Benzofuropyrimidinone Inhibitors Of Pim-1 Length = 328

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 25/178 (14%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           DL +++ ER A      R   F Q+LE V H +     HRD+K +NIL+D +      +L
Sbjct: 143 DLFDFITERGALQEELARSF-FWQVLEAVRHCHNCGVLHRDIKDENILIDLNRG----EL 197
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDA--WTA 442
            + DFGS    K  +   +    +               + P    +  Y    A  W+ 
Sbjct: 198 KLIDFGSGALLKDTVYTDFDGTRV--------------YSPPEWIRYHRYHGRSAAVWSL 243
Query: 443 GTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
           G + Y++   D PF         +V    ++++    ++R  +A      PSDRP+ E
Sbjct: 244 GILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIRWCLAL----RPSDRPTFE 297

>pdb|1XQZ|A Chain A, Crystal Structure Of Hpim-1 Kinase At 2.1 A Resolution Length = 300

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 25/178 (14%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           DL +++ ER A      R   F Q+LE V H +     HRD+K +NIL+D +      +L
Sbjct: 115 DLFDFITERGALQEELARSF-FWQVLEAVRHCHNCGVLHRDIKDENILIDLNRG----EL 169
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDA--WTA 442
            + DFGS    K  +   +    +               + P    +  Y    A  W+ 
Sbjct: 170 KLIDFGSGALLKDTVYTDFDGTRV--------------YSPPEWIRYHRYHGRSAAVWSL 215
Query: 443 GTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
           G + Y++   D PF         +V    ++++    ++R  +A      PSDRP+ E
Sbjct: 216 GILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIRWCLAL----RPSDRPTFE 269

>pdb|4FR4|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase 32a (Yank1) Length = 384

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 78/181 (43%), Gaps = 28/181 (15%)
Query: 325 DLRNYLRERCAQLSMHERVLLF-TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQ 383
           DLR +L++        E V LF  +L+  + +L   R  HRD+K DNILLD         
Sbjct: 101 DLRYHLQQNVH--FKEETVKLFICELVMALDYLQNQRIIHRDMKPDNILLD-----EHGH 153
Query: 384 LVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGL-FSFVNYSKSDAWTA 442
           + ITDF  +        +   +    + G    MAPE+  +  G  +SF      D W+ 
Sbjct: 154 VHITDFNIAAM------LPRETQITTMAGTKPYMAPEMFSSRKGAGYSFA----VDWWSL 203
Query: 443 GTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNV-------PEVMRRLVAKLLENDPSD 495
           G  AYE+     P++  +  +  E+  +    T V        + M  L+ KLLE +P  
Sbjct: 204 GVTAYELLRGRRPYHIRSSTSSKEI--VHTFETTVVTYPSAWSQEMVSLLKKLLEPNPDQ 261
Query: 496 R 496
           R
Sbjct: 262 R 262

>pdb|3JXW|A Chain A, Discovery Of 3h-Benzo[4,5]thieno[3,2-D]pyrimidin-4-Ones As Potent, Highly Selective And Orally Bioavailable Pim Kinases Inhibitors Length = 294

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 25/178 (14%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           DL +++ ER A      R   F Q+LE V H +     HRD+K +NIL+D +      +L
Sbjct: 101 DLFDFITERGALQEELARSF-FWQVLEAVRHCHNCGVLHRDIKDENILIDLNRG----EL 155
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDA--WTA 442
            + DFGS    K  +   +    +               + P    +  Y    A  W+ 
Sbjct: 156 KLIDFGSGALLKDTVYTDFDGTRV--------------YSPPEWIRYHRYHGRSAAVWSL 201
Query: 443 GTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
           G + Y++   D PF         +V    ++++    ++R  +A      PSDRP+ E
Sbjct: 202 GILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIRWCLAL----RPSDRPTFE 255

>pdb|2XRW|A Chain A, Linear Binding Motifs For Jnk And For Calcineurin Antagonistically Control The Nuclear Shuttling Of Nfat4 Length = 371

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 80/194 (41%), Gaps = 44/194 (22%)
Query: 314 SLFILMKKYNTDLRNYLRERCAQLSM---HERV-LLFTQLLEGVTHLNMHRTAHRDLKSD 369
            ++I+M+  + +L       C  + M   HER+  L  Q+L G+ HL+     HRDLK  
Sbjct: 104 DVYIVMELMDANL-------CQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPS 156
Query: 370 NILL--DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVA---LA 424
           NI++  DC+       L I DFG + T                 G   +M P V      
Sbjct: 157 NIVVKSDCT-------LKILDFGLART----------------AGTSFMMTPYVVTRYYR 193
Query: 425 TPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRR 483
            P +   + Y ++ D W+ G +  E+       +    + D     + QL T  PE M++
Sbjct: 194 APEVILGMGYKENVDIWSVGCIMGEMI-KGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKK 252
Query: 484 L---VAKLLENDPS 494
           L   V   +EN P 
Sbjct: 253 LQPTVRTYVENRPK 266

>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor Awl-Ii- 38.3 Length = 361

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 82/189 (43%), Gaps = 21/189 (11%)
Query: 323 NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 382
           N  L ++LR+  AQ ++ + V +   +  G+ +L+     HRDL + NIL+     N+  
Sbjct: 118 NGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILI-----NSNL 172
Query: 383 QLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY-SKSDAWT 441
              ++DFG S   +      Y++     GG +      +   +P   ++  + S SD W+
Sbjct: 173 VCKVSDFGLSRVLEDDPEAAYTTR----GGKIP-----IRWTSPEAIAYRKFTSASDVWS 223
Query: 442 AGTVAYEIFGHDNPFYQSARNTDY-----EVNALPQLNTNVPEVMRRLVAKLLENDPSDR 496
            G V +E+  +    Y    N D      E   LP    + P  + +L+    + D ++R
Sbjct: 224 YGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRLPP-PMDCPAALYQLMLDCWQKDRNNR 282
Query: 497 PSAELAATV 505
           P  E   ++
Sbjct: 283 PKFEQIVSI 291

>pdb|3C0G|A Chain A, Cask Cam-kinase Domain- 3'-amp Complex, P1 Form Length = 351

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 30/160 (18%)
Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
           Q+LE + + + +   HRD+K   +LL  S++N+ P + +  F        G+++Q   + 
Sbjct: 138 QILEALRYCHDNNIIHRDVKPHCVLL-ASKENSAP-VKLGGF--------GVAIQLGESG 187
Query: 408 IELGGNVA---LMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSAR-- 461
           +  GG V     MAPEV    P       Y K  D W  G + + +     PFY +    
Sbjct: 188 LVAGGRVGTPHFMAPEVVKREP-------YGKPVDVWGCGVILFILLSGCLPFYGTKERL 240
Query: 462 -----NTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDR 496
                   Y++N  P+  +++ E  + LV ++L  DP++R
Sbjct: 241 FEGIIKGKYKMN--PRQWSHISESAKDLVRRMLMLDPAER 278

>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase Length = 314

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 92/230 (40%), Gaps = 34/230 (14%)
Query: 282 TDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNT-DLRNYLRERCAQLSMH 340
           +D    I + S++     P  +   G Y +N  L+I+M+      + + +R R   L+  
Sbjct: 66  SDLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRNKTLTED 125
Query: 341 ERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLS 400
           E   +    L+G+ +L+  R  HRD+K+ NILL     NT     + DFG      +G  
Sbjct: 126 EIATILQSTLKGLEYLHFMRKIHRDIKAGNILL-----NTEGHAKLADFGV-----AGQL 175
Query: 401 MQYSSADIELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQS 459
               +    + G    MAPEV          + Y+  +D W+ G  A E+     P+   
Sbjct: 176 TDXMAKRNXVIGTPFWMAPEV-------IQEIGYNCVADIWSLGITAIEMAEGKPPYADI 228
Query: 460 ARNTDYEVNALPQLNTNVPEVMRR----------LVAKLLENDPSDRPSA 499
                + + A+  + TN P   R+           V + L   P  R +A
Sbjct: 229 -----HPMRAIFMIPTNPPPTFRKPELWSDNFTDFVKQCLVKSPEQRATA 273

>pdb|3T8O|A Chain A, Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolution Length = 543

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 69/162 (42%), Gaps = 23/162 (14%)
Query: 342 RVLLFT-QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLS 400
           R + +T Q++ G+ HL+     +RDLK +N+LLD  +D     + I+D G +   K+G +
Sbjct: 290 RAIFYTAQIVSGLEHLHQRNIIYRDLKPENVLLD--DDGN---VRISDLGLAVELKAGQT 344
Query: 401 MQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFY--- 457
                A     G    MAPE+ L     FS V+Y     +  G   YE+     PF    
Sbjct: 345 KTKGYA-----GTPGFMAPELLLGEEYDFS-VDY-----FALGVTLYEMIAARGPFRARG 393
Query: 458 QSARNTDYEVNALPQLNT---NVPEVMRRLVAKLLENDPSDR 496
           +   N + +   L Q  T         +     LL+ DP  R
Sbjct: 394 EKVENKELKQRVLEQAVTYPDKFSPASKDFCEALLQKDPEKR 435

>pdb|1YWV|A Chain A, Crystal Structures Of Proto-Oncogene Kinase Pim1: A Target Of Aberrant Somatic Hypermutations In Diffuse Large Cell Lymphoma Length = 293

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 25/178 (14%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           DL +++ ER A      R   F Q+LE V H +     HRD+K +NIL+D +      +L
Sbjct: 100 DLFDFITERGALQEELARSF-FWQVLEAVRHCHNCGVLHRDIKDENILIDLNRG----EL 154
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDA--WTA 442
            + DFGS    K  +   +    +               + P    +  Y    A  W+ 
Sbjct: 155 KLIDFGSGALLKDTVYTDFDGTRV--------------YSPPEWIRYHRYHGRSAAVWSL 200
Query: 443 GTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
           G + Y++   D PF         +V    ++++    ++R  +A      PSDRP+ E
Sbjct: 201 GILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIRWCLAL----RPSDRPTFE 254

>pdb|3C4W|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1 Bound To Atp And Magnesium Chloride At 2.7a Length = 543

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 69/162 (42%), Gaps = 23/162 (14%)
Query: 342 RVLLFT-QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLS 400
           R + +T Q++ G+ HL+     +RDLK +N+LLD  +D     + I+D G +   K+G +
Sbjct: 290 RAIFYTAQIVSGLEHLHQRNIIYRDLKPENVLLD--DDGN---VRISDLGLAVELKAGQT 344
Query: 401 MQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFY--- 457
                A     G    MAPE+ L     FS V+Y     +  G   YE+     PF    
Sbjct: 345 KTKGYA-----GTPGFMAPELLLGEEYDFS-VDY-----FALGVTLYEMIAARGPFRARG 393
Query: 458 QSARNTDYEVNALPQLNT---NVPEVMRRLVAKLLENDPSDR 496
           +   N + +   L Q  T         +     LL+ DP  R
Sbjct: 394 EKVENKELKQRVLEQAVTYPDKFSPASKDFCEALLQKDPEKR 435

>pdb|4A7C|A Chain A, Crystal Structure Of Pim1 Kinase With Etp46546 Length = 308

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 72/178 (40%), Gaps = 25/178 (14%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           DL +++ ER A      R   F Q+LE V H +     HRD+K +NIL+D +      +L
Sbjct: 123 DLFDFITERGALQEELARSF-FWQVLEAVRHCHNCGVLHRDIKDENILIDLNRG----EL 177
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDA--WTA 442
            + DFGS    K  +   +    +               + P    +  Y    A  W+ 
Sbjct: 178 KLIDFGSGALLKDTVYTDFDGTRV--------------YSPPEWIRYHRYHGRSAAVWSL 223
Query: 443 GTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
           G + Y++   D PF         +V    +++     ++R  +A      PSDRP+ E
Sbjct: 224 GILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSXECQHLIRWCLAL----RPSDRPTFE 277

>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To Substrate Kqwdnye[ptyr]iw Length = 371

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 82/189 (43%), Gaps = 21/189 (11%)
Query: 323 NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 382
           N  L ++LR+  AQ ++ + V +   +  G+ +L+     HRDL + NIL+     N+  
Sbjct: 128 NGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILI-----NSNL 182
Query: 383 QLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY-SKSDAWT 441
              ++DFG S   +      Y++     GG +      +   +P   ++  + S SD W+
Sbjct: 183 VCKVSDFGLSRVLEDDPEAAYTTR----GGKIP-----IRWTSPEAIAYRKFTSASDVWS 233
Query: 442 AGTVAYEIFGHDNPFYQSARNTDY-----EVNALPQLNTNVPEVMRRLVAKLLENDPSDR 496
            G V +E+  +    Y    N D      E   LP    + P  + +L+    + D ++R
Sbjct: 234 YGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRLPP-PMDCPAALYQLMLDCWQKDRNNR 292
Query: 497 PSAELAATV 505
           P  E   ++
Sbjct: 293 PKFEQIVSI 301

>pdb|2VZ6|A Chain A, Structure Of Human Calcium Calmodulin Dependent Protein Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin E804 Length = 313

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 68/164 (41%), Gaps = 25/164 (15%)
Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
           Q+LE V H +     HRDLK +N+LL         +L   DFG +   +      +  A 
Sbjct: 129 QILEAVLHCHQMGVVHRDLKPENLLLASKLKGAAVKL--ADFGLAIEVEGEQQAWFGFA- 185
Query: 408 IELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPF--------YQ 458
               G    ++PEV    P       Y K  D W  G + Y +     PF        YQ
Sbjct: 186 ----GTPGYLSPEVLRKDP-------YGKPVDLWACGVILYILLVGYPPFWDEDQHRLYQ 234
Query: 459 SARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA 502
             +   Y+  + P+ +T  PE  + L+ K+L  +PS R +A  A
Sbjct: 235 QIKAGAYDFPS-PEWDTVTPEA-KDLINKMLTINPSKRITAAEA 276

>pdb|3C4X|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1 Bound To Atp And Magnesium Chloride At 2.9a Length = 543

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 69/162 (42%), Gaps = 23/162 (14%)
Query: 342 RVLLFT-QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLS 400
           R + +T Q++ G+ HL+     +RDLK +N+LLD  +D     + I+D G +   K+G +
Sbjct: 290 RAIFYTAQIVSGLEHLHQRNIIYRDLKPENVLLD--DDGN---VRISDLGLAVELKAGQT 344
Query: 401 MQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFY--- 457
                A     G    MAPE+ L     FS V+Y     +  G   YE+     PF    
Sbjct: 345 KTKGYA-----GTPGFMAPELLLGEEYDFS-VDY-----FALGVTLYEMIAARGPFRARG 393
Query: 458 QSARNTDYEVNALPQLNT---NVPEVMRRLVAKLLENDPSDR 496
           +   N + +   L Q  T         +     LL+ DP  R
Sbjct: 394 EKVENKELKQRVLEQAVTYPDKFSPASKDFCEALLQKDPEKR 435

>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated Protein Kinase And Immunoglobulin Domains Length = 491

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 25/169 (14%)
Query: 336 QLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTN 395
           ++S  E V    Q+ +G+ H++ +   H DLK +NI+      N   +L + DFG +   
Sbjct: 145 KMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSN---ELKLIDFGLTAHL 201
Query: 396 KSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNP 455
               S++ ++      G     APEVA   P     V Y  +D W+ G ++Y +    +P
Sbjct: 202 DPKQSVKVTT------GTAEFAAPEVAEGKP-----VGYY-TDMWSVGVLSYILLSGLSP 249
Query: 456 FYQSARNTDYEVNALPQLNTN--------VPEVMRRLVAKLLENDPSDR 496
           F     N D  +  +   + N        + E  +  + KLL  DP+ R
Sbjct: 250 F--GGENDDETLRNVKSCDWNMDDSAFSGISEDGKDFIRKLLLADPNTR 296

>pdb|3KVX|A Chain A, Jnk3 Bound To Aminopyrimidine Inhibitor, Sr-3562 Length = 364

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 67/163 (41%), Gaps = 30/163 (18%)
Query: 340 HERV-LLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSG 398
           HER+  L  Q+L G+ HL+     HRDLK  NI++    D T   L I DFG + T    
Sbjct: 125 HERMSYLLYQMLXGIKHLHSAGIIHRDLKPSNIVV--KSDXT---LKILDFGLART---- 175
Query: 399 LSMQYSSADIELGGNVALMAPEVA---LATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDN 454
                        G   +M P V       P +   + Y ++ D W+ G +  E+  H  
Sbjct: 176 ------------AGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRH-K 222
Query: 455 PFYQSARNTDYEVNALPQLNTNVPEVMRRL---VAKLLENDPS 494
             +      D     + QL T  PE M++L   V   +EN P 
Sbjct: 223 ILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPK 265

>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f Double Mutant Length = 373

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 82/189 (43%), Gaps = 21/189 (11%)
Query: 323 NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 382
           N  L ++LR+  AQ ++ + V +   +  G+ +L+     HRDL + NIL+     N+  
Sbjct: 130 NGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILI-----NSNL 184
Query: 383 QLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY-SKSDAWT 441
              ++DFG S   +      Y++     GG +      +   +P   ++  + S SD W+
Sbjct: 185 VCKVSDFGLSRVLEDDPEAAYTTR----GGKIP-----IRWTSPEAIAYRKFTSASDVWS 235
Query: 442 AGTVAYEIFGHDNPFYQSARNTDY-----EVNALPQLNTNVPEVMRRLVAKLLENDPSDR 496
            G V +E+  +    Y    N D      E   LP    + P  + +L+    + D ++R
Sbjct: 236 YGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRLPP-PMDCPAALYQLMLDCWQKDRNNR 294
Query: 497 PSAELAATV 505
           P  E   ++
Sbjct: 295 PKFEQIVSI 303

>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant Length = 373

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 82/189 (43%), Gaps = 21/189 (11%)
Query: 323 NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 382
           N  L ++LR+  AQ ++ + V +   +  G+ +L+     HRDL + NIL+     N+  
Sbjct: 130 NGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILI-----NSNL 184
Query: 383 QLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY-SKSDAWT 441
              ++DFG S   +      Y++     GG +      +   +P   ++  + S SD W+
Sbjct: 185 VCKVSDFGLSRVLEDDPEAAYTTR----GGKIP-----IRWTSPEAIAYRKFTSASDVWS 235
Query: 442 AGTVAYEIFGHDNPFYQSARNTDY-----EVNALPQLNTNVPEVMRRLVAKLLENDPSDR 496
            G V +E+  +    Y    N D      E   LP    + P  + +L+    + D ++R
Sbjct: 236 YGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRLPP-PMDCPAALYQLMLDCWQKDRNNR 294
Query: 497 PSAELAATV 505
           P  E   ++
Sbjct: 295 PKFEQIVSI 303

>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant Length = 373

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 82/189 (43%), Gaps = 21/189 (11%)
Query: 323 NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 382
           N  L ++LR+  AQ ++ + V +   +  G+ +L+     HRDL + NIL+     N+  
Sbjct: 130 NGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILI-----NSNL 184
Query: 383 QLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY-SKSDAWT 441
              ++DFG S   +      Y++     GG +      +   +P   ++  + S SD W+
Sbjct: 185 VCKVSDFGLSRVLEDDPEAAYTTR----GGKIP-----IRWTSPEAIAYRKFTSASDVWS 235
Query: 442 AGTVAYEIFGHDNPFYQSARNTDY-----EVNALPQLNTNVPEVMRRLVAKLLENDPSDR 496
            G V +E+  +    Y    N D      E   LP    + P  + +L+    + D ++R
Sbjct: 236 YGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRLPP-PMDCPAALYQLMLDCWQKDRNNR 294
Query: 497 PSAELAATV 505
           P  E   ++
Sbjct: 295 PKFEQIVSI 303

>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure Length = 344

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 82/189 (43%), Gaps = 21/189 (11%)
Query: 323 NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 382
           N  L ++LR+  AQ ++ + V +   +  G+ +L+     HRDL + NIL+     N+  
Sbjct: 101 NGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILI-----NSNL 155
Query: 383 QLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY-SKSDAWT 441
              ++DFG S   +      Y++     GG +      +   +P   ++  + S SD W+
Sbjct: 156 VCKVSDFGLSRVLEDDPEAAYTTR----GGKIP-----IRWTSPEAIAYRKFTSASDVWS 206
Query: 442 AGTVAYEIFGHDNPFYQSARNTDY-----EVNALPQLNTNVPEVMRRLVAKLLENDPSDR 496
            G V +E+  +    Y    N D      E   LP    + P  + +L+    + D ++R
Sbjct: 207 YGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRLPP-PMDCPAALYQLMLDCWQKDRNNR 265
Query: 497 PSAELAATV 505
           P  E   ++
Sbjct: 266 PKFEQIVSI 274

>pdb|2YAC|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With Nms-P937 Length = 311

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 80/175 (45%), Gaps = 26/175 (14%)
Query: 330 LRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDF 389
           L +R   L+  E      Q++ G  +L+ +R  HRDLK  N+ L+  ED    ++ I DF
Sbjct: 107 LHKRRKALTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLN--EDL---EVKIGDF 161
Query: 390 GSSYTNKSGLSMQYSSADIE-LGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYE 448
           G +        ++Y     + L G    +APEV L+  G  SF    + D W+ G + Y 
Sbjct: 162 GLA------TKVEYDGERKKTLCGTPNYIAPEV-LSKKG-HSF----EVDVWSIGCIMYT 209
Query: 449 IFGHDNPFYQSARNTDY-----EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS 498
           +     PF  S     Y        ++P+   ++  V   L+ K+L+ DP+ RP+
Sbjct: 210 LLVGKPPFETSCLKETYLRIKKNEYSIPK---HINPVAASLIQKMLQTDPTARPT 261

>pdb|3LL6|A Chain A, Crystal Structure Of The Human Cyclin G Associated Kinase (gak) Length = 337

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 133/331 (40%), Gaps = 77/331 (23%)
Query: 198 IQIGKFIAKGTNAVVYEA--TFRGVEYALKMMFNYSAASNSHAILKAMSXXXXXXXXXXX 255
           +++ + +A+G  A VYEA     G EYALK + +     N  AI++ +            
Sbjct: 30  LRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKN-RAIIQEVCF---------- 78
Query: 256 XXXDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSL 315
                    ++ L  HPN+V    A                +++    + TG        
Sbjct: 79  ---------MKKLSGHPNIVQFCSA----------------ASIGKEESDTG----QAEF 109
Query: 316 FILMKKYNTDLRNYLR--ERCAQLSMHERVLLFTQLLEGVTHLNMHRTA----HRDLKSD 369
            +L +     L  +L+  E    LS    + +F Q    V H  MHR      HRDLK +
Sbjct: 110 LLLTELCKGQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQH--MHRQKPPIIHRDLKVE 167
Query: 370 NILLDCSEDNTCPQLVITDFGSS-----YTNKSGLSMQYSSADIELGGNVALM--APEVA 422
           N+LL  S   T   + + DFGS+     Y + S  + + +  + E+  N   M   PE+ 
Sbjct: 168 NLLL--SNQGT---IKLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEII 222
Query: 423 LATPGLFS-FVNYSKSDAWTAGTVAYEIFGHDNPFYQSAR----NTDYEVNALPQLNTNV 477
                L+S F    K D W  G + Y +    +PF   A+    N  Y   ++P  +T  
Sbjct: 223 ----DLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKLRIVNGKY---SIPPHDTQY 275
Query: 478 PEVMRRLVAKLLENDPSDRPSAELAATVCQL 508
             V   L+  +L+ +P +R S  +A  V QL
Sbjct: 276 T-VFHSLIRAMLQVNPEERLS--IAEVVHQL 303

>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound Structure Length = 344

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 82/189 (43%), Gaps = 21/189 (11%)
Query: 323 NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 382
           N  L ++LR+  AQ ++ + V +   +  G+ +L+     HRDL + NIL+     N+  
Sbjct: 101 NGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILI-----NSNL 155
Query: 383 QLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY-SKSDAWT 441
              ++DFG S   +      Y++     GG +      +   +P   ++  + S SD W+
Sbjct: 156 VCKVSDFGLSRVLEDDPEAAYTTR----GGKIP-----IRWTSPEAIAYRKFTSASDVWS 206
Query: 442 AGTVAYEIFGHDNPFYQSARNTDY-----EVNALPQLNTNVPEVMRRLVAKLLENDPSDR 496
            G V +E+  +    Y    N D      E   LP    + P  + +L+    + D ++R
Sbjct: 207 YGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRLPP-PMDCPAALYQLMLDCWQKDRNNR 265
Query: 497 PSAELAATV 505
           P  E   ++
Sbjct: 266 PKFEQIVSI 274

>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Dephosphorylated, Amp-Pnp Bound Length = 373

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 82/189 (43%), Gaps = 21/189 (11%)
Query: 323 NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 382
           N  L ++LR+  AQ ++ + V +   +  G+ +L+     HRDL + NIL+     N+  
Sbjct: 130 NGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILI-----NSNL 184
Query: 383 QLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY-SKSDAWT 441
              ++DFG S   +      Y++     GG +      +   +P   ++  + S SD W+
Sbjct: 185 VCKVSDFGLSRVLEDDPEAAYTTR----GGKIP-----IRWTSPEAIAYRKFTSASDVWS 235
Query: 442 AGTVAYEIFGHDNPFYQSARNTDY-----EVNALPQLNTNVPEVMRRLVAKLLENDPSDR 496
            G V +E+  +    Y    N D      E   LP    + P  + +L+    + D ++R
Sbjct: 236 YGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRLPP-PMDCPAALYQLMLDCWQKDRNNR 294
Query: 497 PSAELAATV 505
           P  E   ++
Sbjct: 295 PKFEQIVSI 303

>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 373

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 82/189 (43%), Gaps = 21/189 (11%)
Query: 323 NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 382
           N  L ++LR+  AQ ++ + V +   +  G+ +L+     HRDL + NIL+     N+  
Sbjct: 130 NGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILI-----NSNL 184
Query: 383 QLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY-SKSDAWT 441
              ++DFG S   +      Y++     GG +      +   +P   ++  + S SD W+
Sbjct: 185 VCKVSDFGLSRVLEDDPEAAYTTR----GGKIP-----IRWTSPEAIAYRKFTSASDVWS 235
Query: 442 AGTVAYEIFGHDNPFYQSARNTDY-----EVNALPQLNTNVPEVMRRLVAKLLENDPSDR 496
            G V +E+  +    Y    N D      E   LP    + P  + +L+    + D ++R
Sbjct: 236 YGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRLPP-PMDCPAALYQLMLDCWQKDRNNR 294
Query: 497 PSAELAATV 505
           P  E   ++
Sbjct: 295 PKFEQIVSI 303

>pdb|2BIK|B Chain B, Human Pim1 Phosphorylated On Ser261 Length = 313

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 72/178 (40%), Gaps = 25/178 (14%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           DL +++ ER A      R   F Q+LE V H +     HRD+K +NIL+D +      +L
Sbjct: 128 DLFDFITERGALQEELARSF-FWQVLEAVRHCHNCGVLHRDIKDENILIDLNRG----EL 182
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDA--WTA 442
            + DFGS    K  +   +    +               + P    +  Y    A  W+ 
Sbjct: 183 KLIDFGSGALLKDTVYTDFDGTRV--------------YSPPEWIRYHRYHGRSAAVWSL 228
Query: 443 GTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
           G + Y++   D PF         +V    +++     ++R  +A      PSDRP+ E
Sbjct: 229 GILLYDMVCGDIPFEHDEEIIGGQVFFRQRVSXECQHLIRWCLAL----RPSDRPTFE 282

>pdb|2RKU|A Chain A, Structure Of Plk1 In Complex With Bi2536 Length = 294

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 80/175 (45%), Gaps = 26/175 (14%)
Query: 330 LRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDF 389
           L +R   L+  E      Q++ G  +L+ +R  HRDLK  N+ L+  ED    ++ I DF
Sbjct: 105 LHKRRKALTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLN--EDL---EVKIGDF 159
Query: 390 GSSYTNKSGLSMQYSSADIE-LGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYE 448
           G +        ++Y     + L G    +APEV L+  G  SF    + D W+ G + Y 
Sbjct: 160 GLA------TKVEYDGERKKVLCGTPNYIAPEV-LSKKG-HSF----EVDVWSIGCIMYT 207
Query: 449 IFGHDNPFYQSARNTDY-----EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS 498
           +     PF  S     Y        ++P+   ++  V   L+ K+L+ DP+ RP+
Sbjct: 208 LLVGKPPFETSCLKETYLRIKKNEYSIPK---HINPVAASLIQKMLQTDPTARPT 259

>pdb|3KB7|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 311

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 80/175 (45%), Gaps = 26/175 (14%)
Query: 330 LRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDF 389
           L +R   L+  E      Q++ G  +L+ +R  HRDLK  N+ L+  ED    ++ I DF
Sbjct: 107 LHKRRKALTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLN--EDL---EVKIGDF 161
Query: 390 GSSYTNKSGLSMQYSSADIE-LGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYE 448
           G +        ++Y     + L G    +APEV L+  G  SF    + D W+ G + Y 
Sbjct: 162 GLA------TKVEYDGERKKTLCGTPNYIAPEV-LSKKG-HSF----EVDVWSIGCIMYT 209
Query: 449 IFGHDNPFYQSARNTDY-----EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS 498
           +     PF  S     Y        ++P+   ++  V   L+ K+L+ DP+ RP+
Sbjct: 210 LLVGKPPFETSCLKETYLRIKKNEYSIPK---HINPVAASLIQKMLQTDPTARPT 261

>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742f Triple Mutant Length = 373

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 82/189 (43%), Gaps = 21/189 (11%)
Query: 323 NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 382
           N  L ++LR+  AQ ++ + V +   +  G+ +L+     HRDL + NIL+     N+  
Sbjct: 130 NGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGFVHRDLAARNILI-----NSNL 184
Query: 383 QLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY-SKSDAWT 441
              ++DFG S   +      Y++     GG +      +   +P   ++  + S SD W+
Sbjct: 185 VCKVSDFGLSRVLEDDPEAAYTTR----GGKIP-----IRWTSPEAIAYRKFTSASDVWS 235
Query: 442 AGTVAYEIFGHDNPFYQSARNTDY-----EVNALPQLNTNVPEVMRRLVAKLLENDPSDR 496
            G V +E+  +    Y    N D      E   LP    + P  + +L+    + D ++R
Sbjct: 236 YGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRLPP-PMDCPAALYQLMLDCWQKDRNNR 294
Query: 497 PSAELAATV 505
           P  E   ++
Sbjct: 295 PKFEQIVSI 303

>pdb|2R9S|A Chain A, C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Quinoline Inhibitor Length = 356

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 67/163 (41%), Gaps = 30/163 (18%)
Query: 340 HERV-LLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSG 398
           HER+  L  Q+L G+ HL+     HRDLK  NI++    D T   L I DFG + T    
Sbjct: 118 HERMSYLLYQMLXGIKHLHSAGIIHRDLKPSNIVV--KSDXT---LKILDFGLART---- 168
Query: 399 LSMQYSSADIELGGNVALMAPEVA---LATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDN 454
                        G   +M P V       P +   + Y ++ D W+ G +  E+  H  
Sbjct: 169 ------------AGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRH-K 215
Query: 455 PFYQSARNTDYEVNALPQLNTNVPEVMRRL---VAKLLENDPS 494
             +      D     + QL T  PE M++L   V   +EN P 
Sbjct: 216 ILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPK 258

>pdb|3MA3|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine Kinase (Pim1) In Complex With A Consensus Peptide And A Naphtho-Difuran Ligand Length = 313

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 72/178 (40%), Gaps = 25/178 (14%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           DL +++ ER A      R   F Q+LE V H +     HRD+K +NIL+D +      +L
Sbjct: 129 DLFDFITERGALQEELARSF-FWQVLEAVRHCHNCGVLHRDIKDENILIDLNRG----EL 183
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDA--WTA 442
            + DFGS    K  +   +    +               + P    +  Y    A  W+ 
Sbjct: 184 KLIDFGSGALLKDTVYTDFDGTRV--------------YSPPEWIRYHRYHGRSAAVWSL 229
Query: 443 GTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
           G + Y++   D PF         +V    +++     ++R  +A      PSDRP+ E
Sbjct: 230 GILLYDMVCGDIPFEHDEEIIGGQVFFRQRVSXECQHLIRWCLAL----RPSDRPTFE 283

>pdb|3DCV|A Chain A, Crystal Structure Of Human Pim1 Kinase Complexed With 4-(4- Hydroxy-3-Methyl-Phenyl)-6-Phenylpyrimidin-2(1h)-One Length = 328

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 72/178 (40%), Gaps = 25/178 (14%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           DL +++ ER A      R   F Q+LE V H +     HRD+K +NIL+D +      +L
Sbjct: 143 DLFDFITERGALQEELARSF-FWQVLEAVRHCHNCGVLHRDIKDENILIDLNRG----EL 197
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDA--WTA 442
            + DFGS    K  +   +    +               + P    +  Y    A  W+ 
Sbjct: 198 KLIDFGSGALLKDTVYTDFDGTRV--------------YSPPEWIRYHRYHGRSAAVWSL 243
Query: 443 GTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
           G + Y++   D PF         +V    +++     ++R  +A      PSDRP+ E
Sbjct: 244 GILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSXECQHLIRWCLAL----RPSDRPTFE 297

>pdb|3FI3|A Chain A, Crystal Structure Of Jnk3 With Indazole Inhibitor, Sr-3737 Length = 364

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 67/163 (41%), Gaps = 30/163 (18%)
Query: 340 HERV-LLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSG 398
           HER+  L  Q+L G+ HL+     HRDLK  NI++    D T   L I DFG + T    
Sbjct: 125 HERMSYLLYQMLXGIKHLHSAGIIHRDLKPSNIVV--KSDXT---LKILDFGLART---- 175
Query: 399 LSMQYSSADIELGGNVALMAPEVA---LATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDN 454
                        G   +M P V       P +   + Y ++ D W+ G +  E+  H  
Sbjct: 176 ------------AGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRH-K 222
Query: 455 PFYQSARNTDYEVNALPQLNTNVPEVMRRL---VAKLLENDPS 494
             +      D     + QL T  PE M++L   V   +EN P 
Sbjct: 223 ILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPK 265

>pdb|3CY3|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine Kinase (Pim1) In Complex With A Consensus Peptide And The Jnk Inhibitor V Length = 314

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 72/178 (40%), Gaps = 25/178 (14%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           DL +++ ER A      R   F Q+LE V H +     HRD+K +NIL+D +      +L
Sbjct: 129 DLFDFITERGALQEELARSF-FWQVLEAVRHCHNCGVLHRDIKDENILIDLNRG----EL 183
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDA--WTA 442
            + DFGS    K  +   +    +               + P    +  Y    A  W+ 
Sbjct: 184 KLIDFGSGALLKDTVYTDFDGTRV--------------YSPPEWIRYHRYHGRSAAVWSL 229
Query: 443 GTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
           G + Y++   D PF         +V    +++     ++R  +A      PSDRP+ E
Sbjct: 230 GILLYDMVCGDIPFEHDEEIIGGQVFFRQRVSXECQHLIRWCLAL----RPSDRPTFE 283

>pdb|2V5Q|A Chain A, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 315

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 80/175 (45%), Gaps = 26/175 (14%)
Query: 330 LRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDF 389
           L +R   L+  E      Q++ G  +L+ +R  HRDLK  N+ L+  ED    ++ I DF
Sbjct: 111 LHKRRKALTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLN--EDL---EVKIGDF 165
Query: 390 GSSYTNKSGLSMQYSSADIE-LGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYE 448
           G +        ++Y     + L G    +APEV L+  G  SF    + D W+ G + Y 
Sbjct: 166 GLA------TKVEYDGERKKTLCGTPNYIAPEV-LSKKG-HSF----EVDVWSIGCIMYT 213
Query: 449 IFGHDNPFYQSARNTDY-----EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS 498
           +     PF  S     Y        ++P+   ++  V   L+ K+L+ DP+ RP+
Sbjct: 214 LLVGKPPFETSCLKETYLRIKKNEYSIPK---HINPVAASLIQKMLQTDPTARPT 265

>pdb|2OBJ|A Chain A, Crystal Structure Of Human Pim-1 Kinase In Complex With Inhibitor Length = 333

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 72/178 (40%), Gaps = 25/178 (14%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           DL +++ ER A      R   F Q+LE V H +     HRD+K +NIL+D +      +L
Sbjct: 148 DLFDFITERGALQEELARSF-FWQVLEAVRHCHNCGVLHRDIKDENILIDLNRG----EL 202
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDA--WTA 442
            + DFGS    K  +   +    +               + P    +  Y    A  W+ 
Sbjct: 203 KLIDFGSGALLKDTVYTDFDGTRV--------------YSPPEWIRYHRYHGRSAAVWSL 248
Query: 443 GTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
           G + Y++   D PF         +V    +++     ++R  +A      PSDRP+ E
Sbjct: 249 GILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSXECQHLIRWCLAL----RPSDRPTFE 302

>pdb|3MTL|A Chain A, Crystal Structure Of The Pctaire1 Kinase In Complex With Ind E804 Length = 324

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 35/146 (23%)
Query: 314 SLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
           SL ++ +  + DL+ YL +    ++MH   L   QLL G+ + +  +  HRDLK  N+L+
Sbjct: 74  SLTLVFEYLDKDLKQYLDDCGNIINMHNVKLFLFQLLRGLAYCHRQKVLHRDLKPQNLLI 133
Query: 374 DCSEDNTCPQLVITDFG---------SSYTNKSGLSMQYSSADIELGGNVALMAPEVALA 424
                N   +L + DFG          +Y N+  +++ Y   DI LG             
Sbjct: 134 -----NERGELKLADFGLARAKSIPTKTYDNEV-VTLWYRPPDILLGS------------ 175
Query: 425 TPGLFSFVNYS-KSDAWTAGTVAYEI 449
                   +YS + D W  G + YE+
Sbjct: 176 -------TDYSTQIDMWGVGCIFYEM 194

>pdb|3THB|A Chain A, Structure Of Plk1 Kinase Domain In Complex With A Benzolactam-Derived Inhibitor Length = 333

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 80/175 (45%), Gaps = 26/175 (14%)
Query: 330 LRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDF 389
           L +R   L+  E      Q++ G  +L+ +R  HRDLK  N+ L+  ED    ++ I DF
Sbjct: 129 LHKRRKALTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLN--EDL---EVKIGDF 183
Query: 390 GSSYTNKSGLSMQYSSADIE-LGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYE 448
           G +        ++Y     + L G    +APEV L+  G  SF    + D W+ G + Y 
Sbjct: 184 GLA------TKVEYDGERKKVLCGTPNYIAPEV-LSKKG-HSF----EVDVWSIGCIMYT 231
Query: 449 IFGHDNPFYQSARNTDY-----EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS 498
           +     PF  S     Y        ++P+   ++  V   L+ K+L+ DP+ RP+
Sbjct: 232 LLVGKPPFETSCLKETYLRIKKNEYSIPK---HINPVAASLIQKMLQTDPTARPT 283

>pdb|2OU7|A Chain A, Structure Of The Catalytic Domain Of Human Polo-Like Kinase 1 Length = 335

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 79/173 (45%), Gaps = 22/173 (12%)
Query: 330 LRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDF 389
           L +R   L+  E      Q++ G  +L+ +R  HRDLK  N+ L+  ED    ++ I DF
Sbjct: 131 LHKRRKALTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLN--EDL---EVKIGDF 185
Query: 390 GSSYTNKSGLSMQYSSADIE-LGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYE 448
           G +        ++Y     + L G    +APEV L+  G  SF    + D W+ G + Y 
Sbjct: 186 GLA------TKVEYDGERKKVLCGTPNYIAPEV-LSKKG-HSF----EVDVWSIGCIMYT 233
Query: 449 IFGHDNPFYQSARNTDY---EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS 498
           +     PF  S     Y   + N    +  ++  V   L+ K+L+ DP+ RP+
Sbjct: 234 LLVGKPPFETSCLKETYLRIKKNEY-SIPKHINPVAASLIQKMLQTDPTARPT 285

>pdb|3IS5|A Chain A, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma Gondii, Tgme49_018720 Length = 285

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 70/163 (42%), Gaps = 26/163 (15%)
Query: 345 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQ--LVITDFGSSYTNKSGLSMQ 402
           L  Q++  + + +     H+DLK +NIL      +T P   + I DFG +   KS    +
Sbjct: 129 LMKQMMNALAYFHSQHVVHKDLKPENILF----QDTSPHSPIKIIDFGLAELFKSD---E 181
Query: 403 YSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSA-- 460
           +S+      G    MAPEV       F      K D W+AG V Y +     PF  ++  
Sbjct: 182 HST---NAAGTALYMAPEV-------FKRDVTFKCDIWSAGVVMYFLLTGCLPFTGTSLE 231
Query: 461 ----RNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSA 499
               + T  E N   +     P+ +  L+ ++L  DP  RPSA
Sbjct: 232 EVQQKATYKEPNYAVECRPLTPQAV-DLLKQMLTKDPERRPSA 273

>pdb|3FI2|A Chain A, Crystal Structure Of Jnk3 With Amino-Pyrazole Inhibitor, Sr- 3451 Length = 353

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 70/172 (40%), Gaps = 33/172 (19%)
Query: 334 CAQLSM---HERV-LLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDF 389
           C  + M   HER+  L  Q+L G+ HL+     HRDLK  NI++    D T   L I DF
Sbjct: 116 CQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVV--KSDXT---LKILDF 170
Query: 390 GSSYTNKSGLSMQYSSADIELGGNVALMAPEVA---LATPGLFSFVNYSKS-DAWTAGTV 445
           G + T                 G   +M P V       P +   + Y ++ D W+ G +
Sbjct: 171 GLART----------------AGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCI 214
Query: 446 AYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRL---VAKLLENDPS 494
             E+  H    +      D     + QL T  PE M++L   V   +EN P 
Sbjct: 215 MGEMVRH-KILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPK 265

>pdb|2XIY|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-2 From Crystallographic Fragment Screen Length = 301

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 72/178 (40%), Gaps = 25/178 (14%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           DL +++ ER A      R   F Q+LE V H +     HRD+K +NIL+D +      +L
Sbjct: 116 DLFDFITERGALQEELARSF-FWQVLEAVRHCHNCGVLHRDIKDENILIDLNRG----EL 170
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDA--WTA 442
            + DFGS    K  +   +    +               + P    +  Y    A  W+ 
Sbjct: 171 KLIDFGSGALLKDTVYTDFDGTRV--------------YSPPEWIRYHRYHGRSAAVWSL 216
Query: 443 GTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
           G + Y++   D PF         +V    +++     ++R  +A      PSDRP+ E
Sbjct: 217 GILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSXECQHLIRWCLAL----RPSDRPTFE 270

>pdb|3F2A|A Chain A, Crystal Structure Of Human Pim-1 In Complex With Dappa Length = 300

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 72/178 (40%), Gaps = 25/178 (14%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           DL +++ ER A      R   F Q+LE V H +     HRD+K +NIL+D +      +L
Sbjct: 115 DLFDFITERGALQEELARSF-FWQVLEAVRHCHNCGVLHRDIKDENILIDLNRG----EL 169
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDA--WTA 442
            + DFGS    K  +   +    +               + P    +  Y    A  W+ 
Sbjct: 170 KLIDFGSGALLKDTVYTDFDGTRV--------------YSPPEWIRYHRYHGRSAAVWSL 215
Query: 443 GTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
           G + Y++   D PF         +V    +++     ++R  +A      PSDRP+ E
Sbjct: 216 GILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSXECQHLIRWCLAL----RPSDRPTFE 269

>pdb|3GBZ|A Chain A, Structure Of The Cmgc Cdk Kinase From Giardia Lamblia Length = 329

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 75/175 (42%), Gaps = 20/175 (11%)
Query: 312 NMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNI 371
           N  L ++ +    DL+ Y+ ++   +SM        QL+ GV   +  R  HRDLK  N+
Sbjct: 105 NHRLHLIFEYAENDLKKYM-DKNPDVSMRVIKSFLYQLINGVNFCHSRRCLHRDLKPQNL 163
Query: 372 LLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF 431
           LL  S+ +  P L I DFG       G+ ++  + +I     +    PE+ L +      
Sbjct: 164 LLSVSDASETPVLKIGDFG--LARAFGIPIRQFTHEII---TLWYRPPEILLGS------ 212
Query: 432 VNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTD-----YEVNALPQLNTNVPEV 480
            +YS S D W+   +  E+     P +      D     +EV  LP  +T  P V
Sbjct: 213 RHYSTSVDIWSIACIWAEML-MKTPLFPGDSEIDQLFKIFEVLGLPD-DTTWPGV 265

>pdb|3VUD|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 80/194 (41%), Gaps = 44/194 (22%)
Query: 314 SLFILMKKYNTDLRNYLRERCAQLSM---HERV-LLFTQLLEGVTHLNMHRTAHRDLKSD 369
            ++I+M+  + +L       C  + M   HER+  L  Q+L G+ HL+     HRDLK  
Sbjct: 103 DVYIVMELMDANL-------CQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPS 155
Query: 370 NILL--DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVA---LA 424
           NI++  DC+       L I DFG + T                 G   +M P V      
Sbjct: 156 NIVVKSDCT-------LKILDFGLART----------------AGTSFMMTPYVVTRYYR 192
Query: 425 TPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRR 483
            P +   + Y ++ D W+ G +  E+       +    + D     + QL T  PE M++
Sbjct: 193 APEVILGMGYKENVDIWSVGCIMGEMI-KGGVLFPGTDHIDQWNKVIEQLGTPSPEFMKK 251
Query: 484 L---VAKLLENDPS 494
           L   V   +EN P 
Sbjct: 252 LQPTVRTYVENRPK 265

>pdb|2QNJ|A Chain A, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1 Length = 328

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 20/113 (17%)
Query: 346 FTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSS 405
           F Q++  V + +  R  HRDLK++N+LLD   +     + I DFG              S
Sbjct: 117 FRQIVSAVQYCHQKRIVHRDLKAENLLLDADMN-----IKIADFG-------------FS 158
Query: 406 ADIELGGNVALMAPEVALATPGLFSFVNYS--KSDAWTAGTVAYEIFGHDNPF 456
            +  +GG +         A P LF    Y   + D W+ G + Y +     PF
Sbjct: 159 NEFTVGGKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPF 211

>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:s768a Triple Mutant Length = 373

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 82/189 (43%), Gaps = 21/189 (11%)
Query: 323 NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 382
           N  L ++LR+  AQ ++ + V +   +  G+ +L+     HRDL + NIL+     N+  
Sbjct: 130 NGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILI-----NSNL 184
Query: 383 QLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY-SKSDAWT 441
              ++DFG +   +      Y++     GG +      +   +P   ++  + S SD W+
Sbjct: 185 VCKVSDFGLARVLEDDPEAAYTTR----GGKIP-----IRWTSPEAIAYRKFTSASDVWS 235
Query: 442 AGTVAYEIFGHDNPFYQSARNTDY-----EVNALPQLNTNVPEVMRRLVAKLLENDPSDR 496
            G V +E+  +    Y    N D      E   LP    + P  + +L+    + D ++R
Sbjct: 236 YGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRLPP-PMDCPAALYQLMLDCWQKDRNNR 294
Query: 497 PSAELAATV 505
           P  E   ++
Sbjct: 295 PKFEQIVSI 303

>pdb|1XJD|A Chain A, Crystal Structure Of Pkc-Theta Complexed With Staurosporine At 2a Resolution Length = 345

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 77/188 (40%), Gaps = 24/188 (12%)
Query: 314 SLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
           +LF +M+  N     Y  + C +  +        +++ G+  L+     +RDLK DNILL
Sbjct: 92  NLFFVMEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLHSKGIVYRDLKLDNILL 151
Query: 374 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN 433
           D         + I DFG    N  G      +      G    +APE+ L          
Sbjct: 152 DKD-----GHIKIADFGMCKENMLG-----DAKTNXFCGTPDYIAPEILLGQ-------K 194
Query: 434 YSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRR----LVAKL 488
           Y+ S D W+ G + YE+    +PF+   ++ +   +++   N   P  + +    L+ KL
Sbjct: 195 YNHSVDWWSFGVLLYEMLIGQSPFH--GQDEEELFHSIRMDNPFYPRWLEKEAKDLLVKL 252
Query: 489 LENDPSDR 496
              +P  R
Sbjct: 253 FVREPEKR 260

>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein Kinase Length = 333

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 87/196 (44%), Gaps = 19/196 (9%)
Query: 323 NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 382
           N  L  +LRE+  + S+ + V +   +  G+ +L      HRDL + NIL+     N+  
Sbjct: 130 NGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILV-----NSNL 184
Query: 383 QLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY-SKSDAWT 441
              ++DFG S   +      Y+++    GG +      +    P   S+  + S SD W+
Sbjct: 185 VCKVSDFGLSRVLEDDPEATYTTS----GGKIP-----IRWTAPEAISYRKFTSASDVWS 235
Query: 442 AGTVAYEIFGH-DNPFYQ-SARNTDYEVNALPQLNT--NVPEVMRRLVAKLLENDPSDRP 497
            G V +E+  + + P+++ S       +N   +L T  + P  + +L+ +  + + + RP
Sbjct: 236 FGIVMWEVMTYGERPYWELSNHEVMKAINDGFRLPTPMDCPSAIYQLMMQCWQQERARRP 295
Query: 498 SAELAATVCQLYLWAP 513
                 ++    + AP
Sbjct: 296 KFADIVSILDKLIRAP 311

>pdb|3FE3|A Chain A, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a Double Mutant Length = 328

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 20/113 (17%)
Query: 346 FTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSS 405
           F Q++  V + +  R  HRDLK++N+LLD   +     + I DFG              S
Sbjct: 120 FRQIVSAVQYCHQKRIVHRDLKAENLLLDADMN-----IKIADFG-------------FS 161
Query: 406 ADIELGGNVALMAPEVALATPGLFSFVNYS--KSDAWTAGTVAYEIFGHDNPF 456
            +  +GG +         A P LF    Y   + D W+ G + Y +     PF
Sbjct: 162 NEFTVGGKLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPF 214

>pdb|3FV8|A Chain A, Jnk3 Bound To Piperazine Amide Inhibitor, Sr2774 Length = 355

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 67/163 (41%), Gaps = 30/163 (18%)
Query: 340 HERV-LLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSG 398
           HER+  L  Q+L G+ HL+     HRDLK  NI++    D T   L I DFG + T    
Sbjct: 125 HERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVV--KSDXT---LKILDFGLART---- 175
Query: 399 LSMQYSSADIELGGNVALMAPEVA---LATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDN 454
                        G   +M P V       P +   + Y ++ D W+ G +  E+  H  
Sbjct: 176 ------------AGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRH-K 222
Query: 455 PFYQSARNTDYEVNALPQLNTNVPEVMRRL---VAKLLENDPS 494
             +      D     + QL T  PE M++L   V   +EN P 
Sbjct: 223 ILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPK 265

>pdb|2H6D|A Chain A, Protein Kinase Domain Of The Human 5'-Amp-Activated Protein Kinase Catalytic Subunit Alpha-2 (Ampk Alpha-2 Chain) Length = 276

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 67/165 (40%), Gaps = 36/165 (21%)
Query: 345 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYS 404
           LF Q+L  V + + H   HRDLK +N+LLD   +       I DFG S     G  ++ S
Sbjct: 116 LFQQILSAVDYCHRHMVVHRDLKPENVLLDAHMNAK-----IADFGLSNMMSDGEFLRTS 170
Query: 405 SADIELGGNVALMAPEVA----LATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSA 460
                  G+    APEV      A P         + D W+ G + Y +     PF    
Sbjct: 171 C------GSPNYAAPEVISGRLYAGP---------EVDIWSCGVILYALLCGTLPF---- 211
Query: 461 RNTDYEVNALPQLNTNV---PEVMRRLVAKL----LENDPSDRPS 498
            + ++      ++   V   PE + R VA L    L+ DP  R +
Sbjct: 212 -DDEHVPTLFKKIRGGVFYIPEYLNRSVATLLMHMLQVDPLKRAT 255

>pdb|3VUG|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M2 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 68/165 (41%), Gaps = 34/165 (20%)
Query: 340 HERV-LLFTQLLEGVTHLNMHRTAHRDLKSDNILL--DCSEDNTCPQLVITDFGSSYTNK 396
           HER+  L  Q+L G+ HL+     HRDLK  NI++  DC+       L I DFG + T  
Sbjct: 125 HERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCT-------LKILDFGLART-- 175
Query: 397 SGLSMQYSSADIELGGNVALMAPEVA---LATPGLFSFVNYSKS-DAWTAGTVAYEIFGH 452
                          G   +M P V       P +   + Y ++ D W+ G +  E+   
Sbjct: 176 --------------AGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMI-K 220
Query: 453 DNPFYQSARNTDYEVNALPQLNTNVPEVMRRL---VAKLLENDPS 494
               +    + D     + QL T  PE M++L   V   +EN P 
Sbjct: 221 GGVLFPGTDHIDQWNKVIEQLGTPSPEFMKKLQPTVRTYVENRPK 265

>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510 With Indirubin 3'-Monoxime Bound Length = 313

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 66/160 (41%), Gaps = 39/160 (24%)
Query: 315 LFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLD 374
           +F  M+K   DL+  L E    L   +  +   QLL GV H + HR  HRDLK  N+L+ 
Sbjct: 97  VFEFMEK---DLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCHQHRILHRDLKPQNLLI- 152
Query: 375 CSEDNTCPQLVITDFG---------SSYTNKSGLSMQYSSADIELGGNVALMAPEVALAT 425
               N+   L + DFG          SYT++  +++ Y + D+ +G              
Sbjct: 153 ----NSDGALKLADFGLARAFGIPVRSYTHEV-VTLWYRAPDVLMGSK------------ 195
Query: 426 PGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTD 464
                   YS S D W+ G +  E+     P +    + D
Sbjct: 196 -------KYSTSVDIWSIGCIFAEMIT-GKPLFPGVTDDD 227

>pdb|3MN3|A Chain A, An Inhibited Conformation For The Protein Kinase Domain Of The Saccharomyces Cerevisiae Ampk Homolog Snf1 Length = 271

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 67/143 (46%), Gaps = 17/143 (11%)
Query: 314 SLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
            + ++++    +L +Y+ +R  ++S  E    F Q++  V + + H+  HRDLK +N+LL
Sbjct: 78  EIIMVIEYAGNELFDYIVQR-DKMSEQEARRFFQQIISAVEYCHRHKIVHRDLKPENLLL 136
Query: 374 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN 433
           D   +     + I DFG S     G  ++ S       G+    APEV   +  L++   
Sbjct: 137 DEHLN-----VKIADFGLSNIMTDGNFLKTSC------GSPNYAAPEV--ISGKLYAG-- 181
Query: 434 YSKSDAWTAGTVAYEIFGHDNPF 456
             + D W+ G + Y +     PF
Sbjct: 182 -PEVDVWSCGVILYVMLCRRLPF 203

>pdb|4G3F|A Chain A, Crystal Structure Of Murine Nf-kappab Inducing Kinase (nik) Bound To A 2-(aminothiazoly)phenol (cmp2) Length = 336

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 13/124 (10%)
Query: 341 ERVLLF-TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYT-NKSG 398
           +R L +  Q LEG+ +L+  R  H D+K+DN+LL  S D +  +  + DFG +      G
Sbjct: 150 DRALYYLGQALEGLEYLHTRRILHGDVKADNVLL--SSDGS--RAALCDFGHALCLQPDG 205
Query: 399 LSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQ 458
           L     + D  + G    MAPEV +  P        +K D W++  +   +    +P+ Q
Sbjct: 206 LGKSLLTGDY-IPGTETHMAPEVVMGKP------CDAKVDIWSSCCMMLHMLNGCHPWTQ 258
Query: 459 SARN 462
             R 
Sbjct: 259 YFRG 262

>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510 With Adp Bound Length = 311

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 66/160 (41%), Gaps = 39/160 (24%)
Query: 315 LFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLD 374
           +F  M+K   DL+  L E    L   +  +   QLL GV H + HR  HRDLK  N+L+ 
Sbjct: 97  VFEFMEK---DLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCHQHRILHRDLKPQNLLI- 152
Query: 375 CSEDNTCPQLVITDFG---------SSYTNKSGLSMQYSSADIELGGNVALMAPEVALAT 425
               N+   L + DFG          SYT++  +++ Y + D+ +G              
Sbjct: 153 ----NSDGALKLADFGLARAFGIPVRSYTHEV-VTLWYRAPDVLMGSK------------ 195
Query: 426 PGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTD 464
                   YS S D W+ G +  E+     P +    + D
Sbjct: 196 -------KYSTSVDIWSIGCIFAEMIT-GKPLFPGVTDDD 227

>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 93/219 (42%), Gaps = 27/219 (12%)
Query: 315 LFILMKKY--NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNIL 372
           L +++ +Y  N  L  +LR    Q ++ + V +   +  G+ +L+     HRDL + N+L
Sbjct: 124 LAMIVTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLSDLGYVHRDLAARNVL 183
Query: 373 LDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVAL--MAPE-VALATPGLF 429
           +D   +  C    ++DFG S   +      Y++     GG + +   APE +A  T   F
Sbjct: 184 VDS--NLVCK---VSDFGLSRVLEDDPDAAYTTT----GGKIPIRWTAPEAIAFRT---F 231
Query: 430 SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY-----EVNALPQLNTNVPEVMRRL 484
           S    S SD W+ G V +E+  +    Y +  N D      E   LP      P  + +L
Sbjct: 232 S----SASDVWSFGVVMWEVLAYGERPYWNMTNRDVISSVEEGYRLPA-PMGCPHALHQL 286
Query: 485 VAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGATPS 523
           +      D + RP      +V    + +P+     AT S
Sbjct: 287 MLDCWHKDRAQRPRFSQIVSVLDALIRSPESLRATATVS 325

>pdb|4G3C|A Chain A, Crystal Structure Of Apo Murine Nf-kappab Inducing Kinase (nik) Length = 352

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 13/124 (10%)
Query: 341 ERVLLF-TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYT-NKSG 398
           +R L +  Q LEG+ +L+  R  H D+K+DN+LL  S D +  +  + DFG +      G
Sbjct: 166 DRALYYLGQALEGLEYLHTRRILHGDVKADNVLL--SSDGS--RAALCDFGHALCLQPDG 221
Query: 399 LSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQ 458
           L     + D  + G    MAPEV +  P        +K D W++  +   +    +P+ Q
Sbjct: 222 LGKSLLTGDY-IPGTETHMAPEVVMGKP------CDAKVDIWSSCCMMLHMLNGCHPWTQ 274
Query: 459 SARN 462
             R 
Sbjct: 275 YFRG 278

>pdb|2GPH|A Chain A, Docking Motif Interactions In The Map Kinase Erk2 Length = 364

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 61/144 (42%), Gaps = 26/144 (18%)
Query: 314 SLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
            ++I+     TDL   L+  C  LS         Q+L G+ +++     HRDLK  N+LL
Sbjct: 104 DVYIVQDLMETDLYKLLK--CQHLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLL 161
Query: 374 DCSEDNTCPQLVITDFGSSYT-----NKSGLSMQYSSADIELGGNVALMAPEVALATPGL 428
                NT   L I DFG +       + +G   +Y +            APE+ L + G 
Sbjct: 162 -----NTTCDLKICDFGLARVADPDHDHTGFLTEYVATR-------WYRAPEIMLNSKG- 208
Query: 429 FSFVNYSKS-DAWTAGTVAYEIFG 451
                Y+KS D W+ G +  E+  
Sbjct: 209 -----YTKSIDIWSVGCILAEMLS 227

>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596:y602:s768g Triple Mutant Length = 373

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 81/189 (42%), Gaps = 21/189 (11%)
Query: 323 NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 382
           N  L ++LR+  AQ ++ + V +   +  G+ +L+     HRDL + NIL+     N+  
Sbjct: 130 NGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILI-----NSNL 184
Query: 383 QLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY-SKSDAWT 441
              ++DFG     +      Y++     GG +      +   +P   ++  + S SD W+
Sbjct: 185 VCKVSDFGLGRVLEDDPEAAYTTR----GGKIP-----IRWTSPEAIAYRKFTSASDVWS 235
Query: 442 AGTVAYEIFGHDNPFYQSARNTDY-----EVNALPQLNTNVPEVMRRLVAKLLENDPSDR 496
            G V +E+  +    Y    N D      E   LP    + P  + +L+    + D ++R
Sbjct: 236 YGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRLPP-PMDCPAALYQLMLDCWQKDRNNR 294
Query: 497 PSAELAATV 505
           P  E   ++
Sbjct: 295 PKFEQIVSI 303

>pdb|4G3G|A Chain A, Crystal Structure Of Murine Nf-kappab Inducing Kinase (nik) V408l Bound To A 2-(aminothiazolyl)phenol (cmp3) Length = 350

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 13/124 (10%)
Query: 341 ERVLLF-TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYT-NKSG 398
           +R L +  Q LEG+ +L+  R  H D+K+DN+LL  S D +  +  + DFG +      G
Sbjct: 164 DRALYYLGQALEGLEYLHTRRILHGDVKADNVLL--SSDGS--RAALCDFGHALCLQPDG 219
Query: 399 LSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQ 458
           L     + D  + G    MAPEV +  P        +K D W++  +   +    +P+ Q
Sbjct: 220 LGKSLLTGDY-IPGTETHMAPEVVMGKP------CDAKVDIWSSCCMMLHMLNGCHPWTQ 272
Query: 459 SARN 462
             R 
Sbjct: 273 YFRG 276

>pdb|2FH9|A Chain A, Structure And Dimerization Of The Kinase Domain From Yeast Snf1 Length = 274

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 67/143 (46%), Gaps = 17/143 (11%)
Query: 314 SLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
            + ++++    +L +Y+ +R  ++S  E    F Q++  V + + H+  HRDLK +N+LL
Sbjct: 82  EIIMVIEYAGNELFDYIVQR-DKMSEQEARRFFQQIISAVEYCHRHKIVHRDLKPENLLL 140
Query: 374 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN 433
           D   +     + I DFG S     G  ++ S       G+    APEV   +  L++   
Sbjct: 141 DEHLN-----VKIADFGLSNIMTDGNFLKTSC------GSPNYAAPEV--ISGKLYAG-- 185
Query: 434 YSKSDAWTAGTVAYEIFGHDNPF 456
             + D W+ G + Y +     PF
Sbjct: 186 -PEVDVWSCGVILYVMLCRRLPF 207

>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In Complex With Adp Length = 286

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 77/182 (42%), Gaps = 21/182 (11%)
Query: 323 NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 382
           N  L ++LR+   Q ++ + V +   +  G+ +L      HR L + NIL+     N+  
Sbjct: 92  NGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLADMNYVHRALAARNILV-----NSNL 146
Query: 383 QLVITDFG-SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY-SKSDAW 440
              ++DFG S +         Y+SA   LGG +      +    P    +  + S SD W
Sbjct: 147 VCKVSDFGLSRFLEDDTSDPTYTSA---LGGKIP-----IRWTAPEAIQYRKFTSASDVW 198
Query: 441 TAGTVAYEIFGHDNPFYQSARNTDYEVNALPQ-----LNTNVPEVMRRLVAKLLENDPSD 495
           + G V +E+  +    Y    N D  +NA+ Q        + P  + +L+    + D + 
Sbjct: 199 SYGIVMWEVMSYGERPYWDMTNQDV-INAIEQDYRLPPPMDCPSALHQLMLDCWQKDRNH 257
Query: 496 RP 497
           RP
Sbjct: 258 RP 259

>pdb|3HYH|A Chain A, Crystal Structure Of The Protein Kinase Domain Of Yeast Amp-Activated Protein Kinase Snf1 Length = 275

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 66/143 (46%), Gaps = 17/143 (11%)
Query: 314 SLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
            + ++++    +L +Y+ +R  ++S  E    F Q++  V + + H+  HRDLK +N+LL
Sbjct: 87  EIIMVIEYAGNELFDYIVQR-DKMSEQEARRFFQQIISAVEYCHRHKIVHRDLKPENLLL 145
Query: 374 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN 433
           D         + I DFG S     G  ++ S       G+    APEV   +  L++   
Sbjct: 146 D-----EHLNVKIADFGLSNIMTDGNFLKTSC------GSPNYAAPEV--ISGKLYAG-- 190
Query: 434 YSKSDAWTAGTVAYEIFGHDNPF 456
             + D W+ G + Y +     PF
Sbjct: 191 -PEVDVWSCGVILYVMLCRRLPF 212

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 88/215 (40%), Gaps = 38/215 (17%)
Query: 308 GYGRNMSLFILMKKY--NTDLRNYLRER---CAQLSMHERVLLFTQLLEGVTHLNMHRTA 362
           G+    +  IL+ KY  N +L+ +L         +S  +R+ +      G+ +L+     
Sbjct: 102 GFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRAII 161
Query: 363 HRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVA 422
           HRD+KS NILLD   +N  P+  ITDFG S   K G  +  +     + G +  + PE  
Sbjct: 162 HRDVKSINILLD---ENFVPK--ITDFGIS---KKGTELDQTHLXXVVKGTLGYIDPEYF 213
Query: 423 LATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQ---------------SARNTDYEV 467
           +   G  +     KSD ++ G V +E+    +   Q               S  N   E 
Sbjct: 214 IK--GRLT----EKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQ 267
Query: 468 NALPQLNTNV-PEVMRRL---VAKLLENDPSDRPS 498
              P L   + PE +R+      K L     DRPS
Sbjct: 268 IVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPS 302

>pdb|3I7C|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii (Tgcdpk1) In Complex With Bumped Kinase Inhibitor Na-Pp2 Length = 484

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 70/168 (41%), Gaps = 29/168 (17%)
Query: 345 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYS 404
           +  Q+L G+T+ + ++  HRDLK +N+LL+    +    + I DFG S         + S
Sbjct: 131 IIRQVLSGITYXHKNKIVHRDLKPENLLLESKSKD--ANIRIIDFGLS------THFEAS 182
Query: 405 SADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD 464
               +  G    +APEV   T          K D W+ G + Y +     PF  +    +
Sbjct: 183 KKXKDKIGTAYYIAPEVLHGTYD-------EKCDVWSTGVILYILLSGCPPFNGA---NE 232
Query: 465 YEV----------NALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA 502
           Y++            LPQ    V E  + L+ K L   PS R SA  A
Sbjct: 233 YDILKKVEKGKYTFELPQWK-KVSESAKDLIRKXLTYVPSXRISARDA 279

>pdb|3DAE|A Chain A, Crystal Structure Of Phosphorylated Snf1 Kinase Domain Length = 283

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 66/143 (46%), Gaps = 17/143 (11%)
Query: 314 SLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
            + ++++    +L +Y+ +R  ++S  E    F Q++  V + + H+  HRDLK +N+LL
Sbjct: 88  EIIMVIEYAGNELFDYIVQR-DKMSEQEARRFFQQIISAVEYCHRHKIVHRDLKPENLLL 146
Query: 374 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN 433
           D         + I DFG S     G  ++ S       G+    APEV   +  L++   
Sbjct: 147 D-----EHLNVKIADFGLSNIMTDGNFLKTSC------GSPNYAAPEV--ISGKLYAG-- 191
Query: 434 YSKSDAWTAGTVAYEIFGHDNPF 456
             + D W+ G + Y +     PF
Sbjct: 192 -PEVDVWSCGVILYVMLCRRLPF 213

>pdb|2YZA|A Chain A, Crystal Structure Of Kinase Domain Of Human 5'-Amp-Activated Protein Kinase Alpha-2 Subunit Mutant (T172d) Length = 276

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 67/165 (40%), Gaps = 36/165 (21%)
Query: 345 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYS 404
           LF Q+L  V + + H   HRDLK +N+LLD   +       I DFG S     G  ++ S
Sbjct: 116 LFQQILSAVDYCHRHMVVHRDLKPENVLLDAHMNAK-----IADFGLSNMMSDGEFLRDS 170
Query: 405 SADIELGGNVALMAPEVA----LATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSA 460
                  G+    APEV      A P         + D W+ G + Y +     PF    
Sbjct: 171 C------GSPNYAAPEVISGRLYAGP---------EVDIWSCGVILYALLCGTLPF---- 211
Query: 461 RNTDYEVNALPQLNTNV---PEVMRRLVAKL----LENDPSDRPS 498
            + ++      ++   V   PE + R VA L    L+ DP  R +
Sbjct: 212 -DDEHVPTLFKKIRGGVFYIPEYLNRSVATLLMHMLQVDPLKRAT 255

>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 72/181 (39%), Gaps = 20/181 (11%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHR--TAHRDLKSDNILLDCSEDNTCP 382
           DL + L ++   +    ++ L   +  G+ ++        HRDL+S NI L   ++N   
Sbjct: 107 DLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSLDENAPV 166
Query: 383 QLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTA 442
              + DF         LS Q   +   L GN   MAPE   A    ++     K+D ++ 
Sbjct: 167 CAKVADF--------SLSQQSVHSVSGLLGNFQWMAPETIGAEEESYT----EKADTYSF 214
Query: 443 GTVAYEIFGHDNPFYQSARNTDYEVNAL------PQLNTNVPEVMRRLVAKLLENDPSDR 496
             + Y I   + PF + +      +N +      P +  + P  +R ++      DP  R
Sbjct: 215 AMILYTILTGEGPFDEYSYGKIKFINMIREEGLRPTIPEDCPPRLRNVIELCWSGDPKKR 274
Query: 497 P 497
           P
Sbjct: 275 P 275

>pdb|4B99|A Chain A, Crystal Structure Of Mapk7 (Erk5) With Inhibitor Length = 398

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 70/158 (44%), Gaps = 20/158 (12%)
Query: 303 LNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTA 362
           L PT  YG   S+++++    +DL   +         H R  L+ QLL G+ +++  +  
Sbjct: 122 LRPTVPYGEFKSVYVVLDLMESDLHQIIHSSQPLTLEHVRYFLY-QLLRGLKYMHSAQVI 180
Query: 363 HRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVA---LMAP 419
           HRDLK  N+L+    +  C +L I DFG +     GL    +     +   VA     AP
Sbjct: 181 HRDLKPSNLLV----NENC-ELKIGDFGMA----RGLCTSPAEHQYFMTEYVATRWYRAP 231
Query: 420 EVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPF 456
           E+ L      S   Y+++ D W+ G +  E+      F
Sbjct: 232 ELML------SLHEYTQAIDLWSVGCIFGEMLARRQLF 263

>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene Homologue (V- Fes) Length = 377

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 82/191 (42%), Gaps = 23/191 (12%)
Query: 315 LFILMK-KYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
           ++I+M+     D   +LR   A+L +   + +      G+ +L      HRDL + N L+
Sbjct: 187 IYIVMELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLESKCCIHRDLAARNCLV 246
Query: 374 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN 433
             +E N    L I+DFG S     G+   Y+++    GG   L    V    P   ++  
Sbjct: 247 --TEKNV---LKISDFGMSREEADGV---YAAS----GG---LRQVPVKWTAPEALNYGR 291
Query: 434 Y-SKSDAWTAGTVAYEIFG-----HDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAK 487
           Y S+SD W+ G + +E F      + N   Q  R    +   LP      P+ + RL+ +
Sbjct: 292 YSSESDVWSFGILLWETFSLGASPYPNLSNQQTREFVEKGGRLP-CPELCPDAVFRLMEQ 350
Query: 488 LLENDPSDRPS 498
               +P  RPS
Sbjct: 351 CWAYEPGQRPS 361

>pdb|2RIO|A Chain A, Structure Of The Dual Enzyme Ire1 Reveals The Basis For Catalysis And Regulation Of Non-conventional Splicing Length = 434

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 80/174 (45%), Gaps = 18/174 (10%)
Query: 343 VLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQ--------LVITDFGSSYT 394
           + L  Q+  GV HL+  +  HRDLK  NIL+  S   T  Q        ++I+DFG    
Sbjct: 118 ISLLRQIASGVAHLHSLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKK 177
Query: 395 NKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGH- 452
             SG S   ++ +    G     APE+   +  L +    ++S D ++ G V Y I    
Sbjct: 178 LDSGQSSFRTNLN-NPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKG 236
Query: 453 DNPF---YQSARNTDYEVNALPQL----NTNVPEVMRRLVAKLLENDPSDRPSA 499
            +PF   Y    N    + +L ++    + ++      L+++++++DP  RP+A
Sbjct: 237 KHPFGDKYSRESNIIRGIFSLDEMKCLHDRSLIAEATDLISQMIDHDPLKRPTA 290

>pdb|4IC7|A Chain A, Crystal Structure Of The Erk5 Kinase Domain In Complex With An Mkk5 Binding Fragment Length = 442

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 20/158 (12%)
Query: 303 LNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTA 362
           L PT  YG   S+++++    +DL   +         H R  L+ QLL G+ +++  +  
Sbjct: 123 LRPTVPYGEFKSVYVVLDLMESDLHQIIHSSQPLTLEHVRYFLY-QLLRGLKYMHSAQVI 181
Query: 363 HRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVA---LMAP 419
           HRDLK  N+L+    +  C +L I DFG +     GL    +     +   VA     AP
Sbjct: 182 HRDLKPSNLLV----NENC-ELKIGDFGMA----RGLCTSPAEHQYFMTEYVATRWYRAP 232
Query: 420 EVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPF 456
           E+      + S   Y+++ D W+ G +  E+      F
Sbjct: 233 EL------MLSLHEYTQAIDLWSVGCIFGEMLARRQLF 264

>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase 1) Length = 294

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 70/168 (41%), Gaps = 37/168 (22%)
Query: 345 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYS 404
           +  ++L+G+ +L+  R  HRD+K+ N+LL    D     + + DF        G++ Q +
Sbjct: 121 ILREILKGLDYLHSERKIHRDIKAANVLLSEQGD-----VKLADF--------GVAGQLT 167
Query: 405 SADIE---LGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSAR 461
              I+     G    MAPEV   +   F      K+D W+ G  A E+   + P      
Sbjct: 168 DTQIKRNXFVGTPFWMAPEVIKQSAYDF------KADIWSLGITAIELAKGEPP------ 215
Query: 462 NTDYE---------VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
           N+D            N+ P L     +  +  V   L  DP  RP+A+
Sbjct: 216 NSDLHPMRVLFLIPKNSPPTLEGQHSKPFKEFVEACLNKDPRFRPTAK 263

>pdb|3D5V|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like Kinase 1 (Plk1) Catalytic Domain. Length = 317

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 330 LRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDF 389
           L +R   ++  E      Q ++GV +L+ +R  HRDLK  N+ L+   D     + I DF
Sbjct: 132 LHKRRKAVTEPEARYFMRQTIQGVQYLHNNRVIHRDLKLGNLFLNDDMD-----VKIGDF 186
Query: 390 G-SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYE 448
           G ++     G   +      +L G    +APEV       F        D W+ G + Y 
Sbjct: 187 GLATKIEFDGERKK------DLCGTPNYIAPEVLCKKGHSFEV------DIWSLGCILYT 234
Query: 449 IFGHDNPFYQSARNTDYEVNALPQLNTNVPE----VMRRLVAKLLENDPSDRPS-AEL 501
           +     PF  S     Y    + +   +VP     V   L+ ++L  DP+ RPS AEL
Sbjct: 235 LLVGKPPFETSCLKETY--IRIKKNEYSVPRHINPVASALIRRMLHADPTLRPSVAEL 290

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 88/215 (40%), Gaps = 38/215 (17%)
Query: 308 GYGRNMSLFILMKKY--NTDLRNYLRER---CAQLSMHERVLLFTQLLEGVTHLNMHRTA 362
           G+    +  IL+ KY  N +L+ +L         +S  +R+ +      G+ +L+     
Sbjct: 102 GFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRAII 161
Query: 363 HRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVA 422
           HRD+KS NILLD   +N  P+  ITDFG S   K G  +  +     + G +  + PE  
Sbjct: 162 HRDVKSINILLD---ENFVPK--ITDFGIS---KKGTELGQTHLXXVVKGTLGYIDPEYF 213
Query: 423 LATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQ---------------SARNTDYEV 467
           +   G  +     KSD ++ G V +E+    +   Q               S  N   E 
Sbjct: 214 IK--GRLT----EKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQ 267
Query: 468 NALPQLNTNV-PEVMRRL---VAKLLENDPSDRPS 498
              P L   + PE +R+      K L     DRPS
Sbjct: 268 IVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPS 302

>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 92/219 (42%), Gaps = 27/219 (12%)
Query: 315 LFILMKKY--NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNIL 372
           L +++ +Y  N  L  +LR    Q ++ + V +   +  G+ +L+     HRDL + N+L
Sbjct: 124 LAMIVTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLSDLGYVHRDLAARNVL 183
Query: 373 LDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVAL--MAPE-VALATPGLF 429
           +D   +  C    ++DFG S      L     +A    GG + +   APE +A  T   F
Sbjct: 184 VDS--NLVCK---VSDFGLSRV----LEDDPDAAXTTTGGKIPIRWTAPEAIAFRT---F 231
Query: 430 SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY-----EVNALPQLNTNVPEVMRRL 484
           S    S SD W+ G V +E+  +    Y +  N D      E   LP      P  + +L
Sbjct: 232 S----SASDVWSFGVVMWEVLAYGERPYWNMTNRDVISSVEEGYRLPA-PMGCPHALHQL 286
Query: 485 VAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGATPS 523
           +      D + RP      +V    + +P+     AT S
Sbjct: 287 MLDCWHKDRAQRPRFSQIVSVLDALIRSPESLRATATVS 325

>pdb|3DB6|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like Kinase 1 (Plk1) Catalytic Domain In Complex With Compound 902 Length = 301

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 330 LRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDF 389
           L +R   ++  E      Q ++GV +L+ +R  HRDLK  N+ L+   D     + I DF
Sbjct: 116 LHKRRKAVTEPEARYFMRQTIQGVQYLHNNRVIHRDLKLGNLFLNDDMD-----VKIGDF 170
Query: 390 G-SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYE 448
           G ++     G   +      +L G    +APEV       F        D W+ G + Y 
Sbjct: 171 GLATKIEFDGERKK------DLCGTPNYIAPEVLCKKGHSFEV------DIWSLGCILYT 218
Query: 449 IFGHDNPFYQSARNTDYEVNALPQLNTNVPE----VMRRLVAKLLENDPSDRPS-AEL 501
           +     PF  S     Y    + +   +VP     V   L+ ++L  DP+ RPS AEL
Sbjct: 219 LLVGKPPFETSCLKETY--IRIKKNEYSVPRHINPVASALIRRMLHADPTLRPSVAEL 274

>pdb|2XIX|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-1 From Crystallographic Fragment Screen Length = 301

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 71/178 (39%), Gaps = 25/178 (14%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           DL +++ ER A      R   F Q+LE V H +     HRD+K +NIL+D +      +L
Sbjct: 116 DLFDFITERGALQEELARSF-FWQVLEAVRHCHNCGVLHRDIKDENILIDLNRG----EL 170
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDA--WTA 442
            + DFGS    K  +   +    +               + P    +  Y    A  W+ 
Sbjct: 171 KLIDFGSGALLKDTVYTDFDGTRV--------------YSPPEWIRYHRYHGRSAAVWSL 216
Query: 443 GTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
           G + Y++   D PF         +V    +++     ++R  +A      P DRP+ E
Sbjct: 217 GILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSXECQHLIRWCLAL----RPXDRPTFE 270

>pdb|4AF3|A Chain A, Human Aurora B Kinase In Complex With Incenp And Vx-680 Length = 292

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 87/198 (43%), Gaps = 22/198 (11%)
Query: 309 YGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKS 368
           Y R     IL      +L   L++ C          +  +L + + + +  +  HRD+K 
Sbjct: 93  YDRRRIYLILEYAPRGELYKELQKSCT-FDEQRTATIMEELADALMYCHGKKVIHRDIKP 151
Query: 369 DNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGL 428
           +N+LL    +       I DFG S       S++  +    + G +  + PE+      +
Sbjct: 152 ENLLLGLKGELK-----IADFGWSV---HAPSLRRKT----MCGTLDYLPPEM------I 193
Query: 429 FSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVA 486
              ++  K D W  G + YE+   + PF  ++ N  Y   V    +   +VP   + L++
Sbjct: 194 EGRMHNEKVDLWCIGVLCYELLVGNPPFESASHNETYRRIVKVDLKFPASVPTGAQDLIS 253
Query: 487 KLLENDPSDR-PSAELAA 503
           KLL ++PS+R P A+++A
Sbjct: 254 KLLRHNPSERLPLAQVSA 271

>pdb|3GGF|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase Mst4 In Complex With An Quinazolin Length = 301

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 83/206 (40%), Gaps = 38/206 (18%)
Query: 307 GGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDL 366
           G Y +   L+I+M+         L  R       +   +  ++L+G+ +L+  +  HRD+
Sbjct: 88  GSYLKGSKLWIIMEYLGGGSALDLL-RAGPFDEFQIATMLKEILKGLDYLHSEKKIHRDI 146
Query: 367 KSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIE---LGGNVALMAPEVAL 423
           K+ N+LL    D     + + DF        G++ Q +   I+     G    MAPEV  
Sbjct: 147 KAANVLLSEQGD-----VKLADF--------GVAGQLTDTQIKRNTFVGTPFWMAPEVIQ 193
Query: 424 ATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE---------VNALPQLN 474
            +         SK+D W+ G  A E+   + P      N+D            N  P L 
Sbjct: 194 QS------AYDSKADIWSLGITAIELAKGEPP------NSDMHPMRVLFLIPKNNPPTLV 241
Query: 475 TNVPEVMRRLVAKLLENDPSDRPSAE 500
            +  +  +  +   L  DPS RP+A+
Sbjct: 242 GDFTKSFKEFIDACLNKDPSFRPTAK 267

>pdb|3SOA|A Chain A, Full-Length Human Camkii Length = 444

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 68/164 (41%), Gaps = 25/164 (15%)
Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
           Q+LE V H +     HR+LK +N+LL         +L   DFG +   +      +  A 
Sbjct: 118 QILEAVLHCHQMGVVHRNLKPENLLLASKLKGAAVKL--ADFGLAIEVEGEQQAWFGFA- 174
Query: 408 IELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPF--------YQ 458
               G    ++PEV    P       Y K  D W  G + Y +     PF        YQ
Sbjct: 175 ----GTPGYLSPEVLRKDP-------YGKPVDLWACGVILYILLVGYPPFWDEDQHRLYQ 223
Query: 459 SARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA 502
             +   Y+  + P+ +T  PE  + L+ K+L  +PS R +A  A
Sbjct: 224 QIKAGAYDFPS-PEWDTVTPEA-KDLINKMLTINPSKRITAAEA 265

>pdb|2C30|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 6 Length = 321

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 74/162 (45%), Gaps = 31/162 (19%)
Query: 349 LLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADI 408
           +L+ + +L+     HRD+KSD+ILL         ++ ++DFG        +  +      
Sbjct: 150 VLQALAYLHAQGVIHRDIKSDSILLTLD-----GRVKLSDFGFCAQISKDVPKRKX---- 200
Query: 409 ELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVN 468
            L G    MAPEV   +  L++    ++ D W+ G +  E+   + P++     +D  V 
Sbjct: 201 -LVGTPYWMAPEV--ISRSLYA----TEVDIWSLGIMVIEMVDGEPPYF-----SDSPVQ 248
Query: 469 ALPQLNTNVP----------EVMRRLVAKLLENDPSDRPSAE 500
           A+ +L  + P           V+R  + ++L  DP +R +A+
Sbjct: 249 AMKRLRDSPPPKLKNSHKVSPVLRDFLERMLVRDPQERATAQ 290

>pdb|1YVJ|A Chain A, Crystal Structure Of The Jak3 Kinase Domain In Complex With A Staurosporine Analogue Length = 290

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 13/125 (10%)
Query: 326 LRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLV 385
           LR++L+   A+L     +L  +Q+ +G+ +L   R  HRDL + NIL++ SE +    + 
Sbjct: 97  LRDFLQRHRARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILVE-SEAH----VK 151
Query: 386 ITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTV 445
           I DFG +      L +      +   G     +P    A   L   +   +SD W+ G V
Sbjct: 152 IADFGLAKL----LPLDKDXXVVREPGQ----SPIFWYAPESLSDNIFSRQSDVWSFGVV 203
Query: 446 AYEIF 450
            YE+F
Sbjct: 204 LYELF 208

>pdb|3NUP|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor Length = 307

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 69/160 (43%), Gaps = 29/160 (18%)
Query: 311 RNMSLFILMKKYNTDLRNYLRERCAQLSMHERVL--LFTQLLEGVTHLNMHRTAHRDLKS 368
           R   L ++ +  + DL  YL ++  +  +    +  +  QLL G+  L+ HR  HRDLK 
Sbjct: 90  RETKLTLVFEHVDQDLTTYL-DKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKP 148
Query: 369 DNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVAL----A 424
            NIL+  S      Q+ + DFG +        M  +S  + L       APEV L    A
Sbjct: 149 QNILVTSS-----GQIKLADFGLARIY--SFQMALTSVVVTLW----YRAPEVLLQSSYA 197
Query: 425 TPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD 464
           TP           D W+ G +  E+F    P ++ + + D
Sbjct: 198 TP----------VDLWSVGCIFAEMF-RRKPLFRGSSDVD 226

>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex Length = 302

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 79/182 (43%), Gaps = 21/182 (11%)
Query: 323 NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 382
           N  L ++LR    Q ++ + V +   +  G+ +L      HRDL + NIL+     N+  
Sbjct: 101 NGALDSFLRLNDGQFTVIQLVGMLRGIASGMRYLAEMSYVHRDLAARNILV-----NSNL 155
Query: 383 QLVITDFG-SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY-SKSDAW 440
              ++DFG S +  ++      +S+   LGG +      +    P   +F  + S SDAW
Sbjct: 156 VCKVSDFGLSRFLEENSSDPTETSS---LGGKIP-----IRWTAPEAIAFRKFTSASDAW 207
Query: 441 TAGTVAYEIFGHDNPFYQSARNTDYEVNALPQ-----LNTNVPEVMRRLVAKLLENDPSD 495
           + G V +E+       Y    N D  +NA+ Q        + P  + +L+    + D + 
Sbjct: 208 SYGIVMWEVMSFGERPYWDMSNQDV-INAIEQDYRLPPPPDCPTSLHQLMLDCWQKDRNA 266
Query: 496 RP 497
           RP
Sbjct: 267 RP 268

>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma Viral Oncogene Homologue (V-Fes) In Complex With Staurosporine And A Consensus Peptide Length = 377

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 77/191 (40%), Gaps = 23/191 (12%)
Query: 315 LFILMK-KYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
           ++I+M+     D   +LR   A+L +   + +      G+ +L      HRDL + N L+
Sbjct: 187 IYIVMELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLESKCCIHRDLAARNCLV 246
Query: 374 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN 433
             +E N    L I+DFG          M    AD     +  L    V    P   ++  
Sbjct: 247 --TEKNV---LKISDFG----------MSREEADGVXAASGGLRQVPVKWTAPEALNYGR 291
Query: 434 Y-SKSDAWTAGTVAYEIFG-----HDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAK 487
           Y S+SD W+ G + +E F      + N   Q  R    +   LP      P+ + RL+ +
Sbjct: 292 YSSESDVWSFGILLWETFSLGASPYPNLSNQQTREFVEKGGRLP-CPELCPDAVFRLMEQ 350
Query: 488 LLENDPSDRPS 498
               +P  RPS
Sbjct: 351 CWAYEPGQRPS 361

>pdb|2PSQ|A Chain A, Crystal Structure Of Unphosphorylated Unactivated Wild Type Fgf Receptor 2 (Fgfr2) Kinase Domain Length = 370

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 72/164 (43%), Gaps = 30/164 (18%)
Query: 303 LNPTGGYGRNMSLFILMK-KYNTDLRNYLRERC---------------AQLSMHERVLLF 346
           +N  G   ++  L+++++     +LR YLR R                 Q++  + V   
Sbjct: 150 INLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCT 209
Query: 347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSA 406
            QL  G+ +L   +  HRDL + N+L+  +E+N    + I DFG +   +   ++ Y   
Sbjct: 210 YQLARGMEYLASQKCIHRDLAARNVLV--TENNV---MKIADFGLA---RDINNIDYYKK 261
Query: 407 DIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIF 450
                  V  MAPE       LF  V   +SD W+ G + +EIF
Sbjct: 262 TTNGRLPVKWMAPE------ALFDRVYTHQSDVWSFGVLMWEIF 299

>pdb|1GZN|A Chain A, Structure Of Pkb Kinase Domain Length = 335

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 24/154 (15%)
Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
           +++  + +L+     +RD+K +N++LD         + ITDFG     K G+S     A 
Sbjct: 113 EIVSALEYLHSRDVVYRDIKLENLMLDKD-----GHIKITDFGLC---KEGIS---DGAT 161
Query: 408 IE-LGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDY 465
           ++   G    +APEV           +Y ++ D W  G V YE+     PFY       +
Sbjct: 162 MKTFCGTPEYLAPEVLEDN-------DYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLF 214
Query: 466 EVNALPQL---NTNVPEVMRRLVAKLLENDPSDR 496
           E+  + ++    T  PE  + L+A LL+ DP  R
Sbjct: 215 ELILMEEIRFPRTLSPEA-KSLLAGLLKKDPKQR 247

>pdb|3E87|A Chain A, Crystal Structures Of The Kinase Domain Of Akt2 In Complex With Atp- Competitive Inhibitors Length = 335

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 24/154 (15%)
Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
           +++  + +L+     +RD+K +N++LD         + ITDFG     K G+S     A 
Sbjct: 113 EIVSALEYLHSRDVVYRDIKLENLMLDKD-----GHIKITDFGLC---KEGIS---DGAT 161
Query: 408 IE-LGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDY 465
           ++   G    +APEV           +Y ++ D W  G V YE+     PFY       +
Sbjct: 162 MKXFCGTPEYLAPEVLEDN-------DYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLF 214
Query: 466 EVNALPQL---NTNVPEVMRRLVAKLLENDPSDR 496
           E+  + ++    T  PE  + L+A LL+ DP  R
Sbjct: 215 ELILMEEIRFPRTLSPEA-KSLLAGLLKKDPKQR 247

>pdb|3D5W|A Chain A, Crystal Structure Of A Phosphorylated Polo-Like Kinase 1 (Plk1) Catalytic Domain In Complex With Adp Length = 317

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 330 LRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDF 389
           L +R   ++  E      Q ++GV +L+ +R  HRDLK  N+ L+   D     + I DF
Sbjct: 132 LHKRRKAVTEPEARYFMRQTIQGVQYLHNNRVIHRDLKLGNLFLNDDMD-----VKIGDF 186
Query: 390 GSSYTNKSGLSMQYSSADIE-LGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYE 448
           G +        +++     + L G    +APEV       F        D W+ G + Y 
Sbjct: 187 GLA------TKIEFDGERKKXLCGTPNYIAPEVLCKKGHSFEV------DIWSLGCILYT 234
Query: 449 IFGHDNPFYQSARNTDYEVNALPQLNTNVPE----VMRRLVAKLLENDPSDRPS-AEL 501
           +     PF  S     Y    + +   +VP     V   L+ ++L  DP+ RPS AEL
Sbjct: 235 LLVGKPPFETSCLKETY--IRIKKNEYSVPRHINPVASALIRRMLHADPTLRPSVAEL 290

>pdb|1O6K|A Chain A, Structure Of Activated Form Of Pkb Kinase Domain S474d With Gsk3 Peptide And Amp-Pnp Length = 336

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 24/154 (15%)
Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
           +++  + +L+     +RD+K +N++LD         + ITDFG     K G+S     A 
Sbjct: 113 EIVSALEYLHSRDVVYRDIKLENLMLDKD-----GHIKITDFGLC---KEGIS---DGAT 161
Query: 408 IE-LGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDY 465
           ++   G    +APEV           +Y ++ D W  G V YE+     PFY       +
Sbjct: 162 MKXFCGTPEYLAPEVLEDN-------DYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLF 214
Query: 466 EVNALPQL---NTNVPEVMRRLVAKLLENDPSDR 496
           E+  + ++    T  PE  + L+A LL+ DP  R
Sbjct: 215 ELILMEEIRFPRTLSPEA-KSLLAGLLKKDPKQR 247

>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3, Stk24) Length = 304

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 88/200 (44%), Gaps = 26/200 (13%)
Query: 307 GGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDL 366
           G Y ++  L+I+M+         L E    L   +   +  ++L+G+ +L+  +  HRD+
Sbjct: 72  GSYLKDTKLWIIMEYLGGGSALDLLE-PGPLDETQIATILREILKGLDYLHSEKKIHRDI 130
Query: 367 KSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELG---GNVALMAPEVAL 423
           K+ N+LL  SE     ++ + DF        G++ Q +   I+     G    MAPEV  
Sbjct: 131 KAANVLL--SEHG---EVKLADF--------GVAGQLTDTQIKRNTFVGTPFWMAPEVIK 177
Query: 424 ATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQ-SARNTDYEV--NALPQLNTNVPEV 480
            +         SK+D W+ G  A E+   + P  +       + +  N  P L  N  + 
Sbjct: 178 QS------AYDSKADIWSLGITAIELARGEPPHSELHPMKVLFLIPKNNPPTLEGNYSKP 231
Query: 481 MRRLVAKLLENDPSDRPSAE 500
           ++  V   L  +PS RP+A+
Sbjct: 232 LKEFVEACLNKEPSFRPTAK 251

>pdb|1GZK|A Chain A, Molecular Mechanism For The Regulation Of Protein Kinase B Akt By Hydrophobic Motif Phosphorylation Length = 315

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 24/154 (15%)
Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
           +++  + +L+     +RD+K +N++LD         + ITDFG     K G+S     A 
Sbjct: 113 EIVSALEYLHSRDVVYRDIKLENLMLDKD-----GHIKITDFGLC---KEGIS---DGAT 161
Query: 408 IE-LGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDY 465
           ++   G    +APEV           +Y ++ D W  G V YE+     PFY       +
Sbjct: 162 MKTFCGTPEYLAPEVLEDN-------DYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLF 214
Query: 466 EVNALPQL---NTNVPEVMRRLVAKLLENDPSDR 496
           E+  + ++    T  PE  + L+A LL+ DP  R
Sbjct: 215 ELILMEEIRFPRTLSPEA-KSLLAGLLKKDPKQR 247

>pdb|1MRV|A Chain A, Crystal Structure Of An Inactive Akt2 Kinase Domain Length = 339

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 24/154 (15%)
Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
           +++  + +L+     +RD+K +N++LD         + ITDFG     K G+S     A 
Sbjct: 116 EIVSALEYLHSRDVVYRDIKLENLMLDKD-----GHIKITDFGLC---KEGIS---DGAT 164
Query: 408 IE-LGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDY 465
           ++   G    +APEV           +Y ++ D W  G V YE+     PFY       +
Sbjct: 165 MKTFCGTPEYLAPEVLEDN-------DYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLF 217
Query: 466 EVNALPQL---NTNVPEVMRRLVAKLLENDPSDR 496
           E+  + ++    T  PE  + L+A LL+ DP  R
Sbjct: 218 ELILMEEIRFPRTLSPEA-KSLLAGLLKKDPKQR 250

>pdb|3D5U|A Chain A, Crystal Structure Of A Wildtype Polo-Like Kinase 1 (Plk1) Catalytic Domain Length = 317

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 330 LRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDF 389
           L +R   ++  E      Q ++GV +L+ +R  HRDLK  N+ L+   D     + I DF
Sbjct: 132 LHKRRKAVTEPEARYFMRQTIQGVQYLHNNRVIHRDLKLGNLFLNDDMD-----VKIGDF 186
Query: 390 GSSYTNKSGLSMQYSSADIE-LGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYE 448
           G +        +++     + L G    +APEV       F        D W+ G + Y 
Sbjct: 187 GLA------TKIEFDGERKKTLCGTPNYIAPEVLCKKGHSFEV------DIWSLGCILYT 234
Query: 449 IFGHDNPFYQSARNTDYEVNALPQLNTNVPE----VMRRLVAKLLENDPSDRPS-AEL 501
           +     PF  S     Y    + +   +VP     V   L+ ++L  DP+ RPS AEL
Sbjct: 235 LLVGKPPFETSCLKETY--IRIKKNEYSVPRHINPVASALIRRMLHADPTLRPSVAEL 290

>pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3, Stk24) In Complex With Staurosporine Length = 304

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 88/200 (44%), Gaps = 26/200 (13%)
Query: 307 GGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDL 366
           G Y ++  L+I+M+         L E    L   +   +  ++L+G+ +L+  +  HRD+
Sbjct: 72  GSYLKDTKLWIIMEYLGGGSALDLLE-PGPLDETQIATILREILKGLDYLHSEKKIHRDI 130
Query: 367 KSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELG---GNVALMAPEVAL 423
           K+ N+LL  SE     ++ + DF        G++ Q +   I+     G    MAPEV  
Sbjct: 131 KAANVLL--SEHG---EVKLADF--------GVAGQLTDTQIKRNXFVGTPFWMAPEVIK 177
Query: 424 ATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQ-SARNTDYEV--NALPQLNTNVPEV 480
            +         SK+D W+ G  A E+   + P  +       + +  N  P L  N  + 
Sbjct: 178 QS------AYDSKADIWSLGITAIELARGEPPHSELHPMKVLFLIPKNNPPTLEGNYSKP 231
Query: 481 MRRLVAKLLENDPSDRPSAE 500
           ++  V   L  +PS RP+A+
Sbjct: 232 LKEFVEACLNKEPSFRPTAK 251

>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta Length = 294

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 88/200 (44%), Gaps = 26/200 (13%)
Query: 307 GGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDL 366
           G Y ++  L+I+M+         L E    L   +   +  ++L+G+ +L+  +  HRD+
Sbjct: 92  GSYLKDTKLWIIMEYLGGGSALDLLE-PGPLDETQIATILREILKGLDYLHSEKKIHRDI 150
Query: 367 KSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIE---LGGNVALMAPEVAL 423
           K+ N+LL  SE     ++ + DF        G++ Q +   I+     G    MAPEV  
Sbjct: 151 KAANVLL--SEHG---EVKLADF--------GVAGQLTDTQIKRNTFVGTPFWMAPEVIK 197
Query: 424 ATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQ-SARNTDYEV--NALPQLNTNVPEV 480
            +         SK+D W+ G  A E+   + P  +       + +  N  P L  N  + 
Sbjct: 198 QS------AYDSKADIWSLGITAIELARGEPPHSELHPMKVLFLIPKNNPPTLEGNYSKP 251
Query: 481 MRRLVAKLLENDPSDRPSAE 500
           ++  V   L  +PS RP+A+
Sbjct: 252 LKEFVEACLNKEPSFRPTAK 271

>pdb|3A7F|A Chain A, Human Mst3 Kinase Length = 303

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 88/200 (44%), Gaps = 26/200 (13%)
Query: 307 GGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDL 366
           G Y ++  L+I+M+         L E    L   +   +  ++L+G+ +L+  +  HRD+
Sbjct: 87  GSYLKDTKLWIIMEYLGGGSALDLLE-PGPLDETQIATILREILKGLDYLHSEKKIHRDI 145
Query: 367 KSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELG---GNVALMAPEVAL 423
           K+ N+LL  SE     ++ + DF        G++ Q +   I+     G    MAPEV  
Sbjct: 146 KAANVLL--SEHG---EVKLADF--------GVAGQLTDTQIKRNXFVGTPFWMAPEVIK 192
Query: 424 ATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQ-SARNTDYEV--NALPQLNTNVPEV 480
            +         SK+D W+ G  A E+   + P  +       + +  N  P L  N  + 
Sbjct: 193 QS------AYDSKADIWSLGITAIELARGEPPHSELHPMKVLFLIPKNNPPTLEGNYSKP 246
Query: 481 MRRLVAKLLENDPSDRPSAE 500
           ++  V   L  +PS RP+A+
Sbjct: 247 LKEFVEACLNKEPSFRPTAK 266

>pdb|3PJC|A Chain A, Crystal Structure Of Jak3 Complexed With A Potent Atp Site Inhibitor Showing High Selectivity Within The Janus Kinase Family Length = 315

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 13/143 (9%)
Query: 308 GYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLK 367
           G GR     ++    +  LR++L+   A+L     +L  +Q+ +G+ +L   R  HRDL 
Sbjct: 83  GPGRQSLRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLGSRRCVHRDLA 142
Query: 368 SDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG 427
           + NIL++ SE +    + I DFG        L   Y          +   APE    +  
Sbjct: 143 ARNILVE-SEAH----VKIADFG--LAKLLPLDKDYYVVREPGQSPIFWYAPES--LSDN 193
Query: 428 LFSFVNYSKSDAWTAGTVAYEIF 450
           +FS     +SD W+ G V YE+F
Sbjct: 194 IFS----RQSDVWSFGVVLYELF 212

>pdb|3C4F|A Chain A, Fgfr Tyrosine Kinase Domain In Complex With 3-(3- Methoxybenzyl)-7-Azaindole Length = 302

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 30/164 (18%)
Query: 303 LNPTGGYGRNMSLFILMK-KYNTDLRNYLRER-------C--------AQLSMHERVLLF 346
           +N  G   ++  L+++++     +LR YL+ R       C         QLS  + V   
Sbjct: 82  INLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYCYNPSHNPEEQLSSKDLVSCA 141
Query: 347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSA 406
            Q+  G+ +L   +  HRDL + N+L+  +EDN    + I DFG +   +    + Y   
Sbjct: 142 YQVARGMEYLASKKCIHRDLAARNVLV--TEDNV---MKIADFGLA---RDIHHIDYYKK 193
Query: 407 DIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIF 450
                  V  MAPE       LF  +   +SD W+ G + +EIF
Sbjct: 194 TTNGRLPVKWMAPE------ALFDRIYTHQSDVWSFGVLLWEIF 231

>pdb|1O6L|A Chain A, Crystal Structure Of An Activated Akt/protein Kinase B (pkb-pif Chimera) Ternary Complex With Amp-pnp And Gsk3 Peptide Length = 337

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 24/154 (15%)
Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
           +++  + +L+     +RD+K +N++LD         + ITDFG     K G+S     A 
Sbjct: 113 EIVSALEYLHSRDVVYRDIKLENLMLDKD-----GHIKITDFGLC---KEGIS---DGAT 161
Query: 408 IE-LGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDY 465
           ++   G    +APEV           +Y ++ D W  G V YE+     PFY       +
Sbjct: 162 MKXFCGTPEYLAPEVLEDN-------DYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLF 214
Query: 466 EVNALPQL---NTNVPEVMRRLVAKLLENDPSDR 496
           E+  + ++    T  PE  + L+A LL+ DP  R
Sbjct: 215 ELILMEEIRFPRTLSPEA-KSLLAGLLKKDPKQR 247

>pdb|3LXK|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 327

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 13/143 (9%)
Query: 308 GYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLK 367
           G GR     ++    +  LR++L+   A+L     +L  +Q+ +G+ +L   R  HRDL 
Sbjct: 95  GPGRQSLRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLGSRRCVHRDLA 154
Query: 368 SDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG 427
           + NIL++ SE +    + I DFG        L   Y          +   APE    +  
Sbjct: 155 ARNILVE-SEAH----VKIADFG--LAKLLPLDKDYYVVREPGQSPIFWYAPES--LSDN 205
Query: 428 LFSFVNYSKSDAWTAGTVAYEIF 450
           +FS     +SD W+ G V YE+F
Sbjct: 206 IFS----RQSDVWSFGVVLYELF 224

>pdb|2BIY|A Chain A, Structure Of Pdk1-S241a Mutant Kinase Domain Length = 310

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 88/234 (37%), Gaps = 48/234 (20%)
Query: 271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYL 330
           HP  V ++F F D      D  L +  +          Y +N  L   ++K  +      
Sbjct: 89  HPFFVKLYFTFQD------DEKLYFGLS----------YAKNGELLKYIRKIGS-----F 127
Query: 331 RERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG 390
            E C +    E       ++  + +L+     HRDLK +NILL     N    + ITDFG
Sbjct: 128 DETCTRFYTAE-------IVSALEYLHGKGIIHRDLKPENILL-----NEDMHIQITDFG 175
Query: 391 SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIF 450
           ++           ++A +   G    ++PE+        S      SD W  G + Y++ 
Sbjct: 176 TAKVLSPESKQARANAFV---GTAQYVSPELLTEKSACKS------SDLWALGCIIYQLV 226
Query: 451 GHDNPFYQSARNTDYEVNALPQLNTNVPEVM----RRLVAKLLENDPSDRPSAE 500
               PF   A N       + +L  + PE      R LV KLL  D + R   E
Sbjct: 227 AGLPPF--RAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGCE 278

>pdb|1JOW|B Chain B, Crystal Structure Of A Complex Of Human Cdk6 And A Viral Cyclin Length = 308

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 69/160 (43%), Gaps = 29/160 (18%)
Query: 311 RNMSLFILMKKYNTDLRNYLRERCAQLSMHERVL--LFTQLLEGVTHLNMHRTAHRDLKS 368
           R   L ++ +  + DL  YL ++  +  +    +  +  QLL G+  L+ HR  HRDLK 
Sbjct: 90  RETKLTLVFEHVDQDLTTYL-DKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKP 148
Query: 369 DNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVAL----A 424
            NIL+  S      Q+ + DFG +        M  +S  + L       APEV L    A
Sbjct: 149 QNILVTSS-----GQIKLADFGLARIY--SFQMALTSVVVTLW----YRAPEVLLQSSYA 197
Query: 425 TPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD 464
           TP           D W+ G +  E+F    P ++ + + D
Sbjct: 198 TP----------VDLWSVGCIFAEMF-RRKPLFRGSSDVD 226

>pdb|3H4J|B Chain B, Crystal Structure Of Pombe Ampk Kdaid Fragment Length = 336

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 37/183 (20%)
Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           +L +Y+ E+  +++  E    F Q++  + + + H+  HRDLK +N+LLD   DN    +
Sbjct: 94  ELFDYIVEK-KRMTEDEGRRFFQQIICAIEYCHRHKIVHRDLKPENLLLD---DNL--NV 147
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVA----LATPGLFSFVNYSKSDAW 440
            I DFG S     G  ++ S       G+    APEV      A P         + D W
Sbjct: 148 KIADFGLSNIMTDGNFLKTSC------GSPNYAAPEVINGKLYAGP---------EVDVW 192
Query: 441 TAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNV---PEVM----RRLVAKLLENDP 493
           + G V Y +     PF     + ++  N   ++N+ V   P+ +    + L+ +++  DP
Sbjct: 193 SCGIVLYVMLVGRLPF-----DDEFIPNLFKKVNSCVYVMPDFLSPGAQSLIRRMIVADP 247
Query: 494 SDR 496
             R
Sbjct: 248 MQR 250

>pdb|2J7T|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10 Bound To Su11274 Length = 302

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 11/111 (9%)
Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
           Q+LE +  L+  R  HRDLK+ N+L+    D     + + DFG S  N   L  + S   
Sbjct: 125 QMLEALNFLHSKRIIHRDLKAGNVLMTLEGD-----IRLADFGVSAKNLKTLQKRDS--- 176
Query: 408 IELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQ 458
               G    MAPEV +      +  +Y K+D W+ G    E+   + P ++
Sbjct: 177 --FIGTPYWMAPEVVMCETMKDTPYDY-KADIWSLGITLIEMAQIEPPHHE 224

>pdb|4HVD|A Chain A, Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic Acid ((s)-1,2,2-trimethyl-propyl)-amide Length = 314

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 13/143 (9%)
Query: 308 GYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLK 367
           G GR     ++    +  LR++L+   A+L     +L  +Q+ +G+ +L   R  HRDL 
Sbjct: 82  GPGRQSLRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLGSRRCVHRDLA 141
Query: 368 SDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG 427
           + NIL++ SE +    + I DFG        L   Y          +   APE    +  
Sbjct: 142 ARNILVE-SEAH----VKIADFG--LAKLLPLDKDYYVVREPGQSPIFWYAPES--LSDN 192
Query: 428 LFSFVNYSKSDAWTAGTVAYEIF 450
           +FS     +SD W+ G V YE+F
Sbjct: 193 IFS----RQSDVWSFGVVLYELF 211

>pdb|3NUS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment8 Length = 286

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 88/235 (37%), Gaps = 50/235 (21%)
Query: 271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYL 330
           HP  V ++F F D      D  L +  +          Y +N  L   ++K  +      
Sbjct: 67  HPFFVKLYFTFQD------DEKLYFGLS----------YAKNGELLKYIRKIGS-----F 105
Query: 331 RERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG 390
            E C +    E       ++  + +L+     HRDLK +NILL     N    + ITDFG
Sbjct: 106 DETCTRFYTAE-------IVSALEYLHGKGIIHRDLKPENILL-----NEDMHIQITDFG 153
Query: 391 SSYTNKSGLSMQYSSADI-ELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEI 449
           ++      LS +   A      G    ++PE+        S      SD W  G + Y++
Sbjct: 154 TAKV----LSPESKQARANXFVGTAQYVSPELLTEKSACKS------SDLWALGCIIYQL 203
Query: 450 FGHDNPFYQSARNTDYEVNALPQLNTNVPEVM----RRLVAKLLENDPSDRPSAE 500
                PF   A N       + +L  + PE      R LV KLL  D + R   E
Sbjct: 204 VAGLPPF--RAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGCE 256

>pdb|3PLS|A Chain A, Ron In Complex With Ligand Amp-Pnp Length = 298

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 64/302 (21%), Positives = 114/302 (37%), Gaps = 59/302 (19%)
Query: 202 KFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSXXXXXXXXXXXXXXDML 261
           + I KG   VVY   +              A +     +K++S               +L
Sbjct: 27  RVIGKGHFGVVYHGEYID-----------QAQNRIQCAIKSLSRITEMQQVEAFLREGLL 75
Query: 262 MNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKK 321
           M  +     HPNV+ +               ++ P  LP  L P   +G           
Sbjct: 76  MRGLN----HPNVLAL------------IGIMLPPEGLPHVLLPYMCHG----------- 108
Query: 322 YNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTC 381
              DL  ++R      ++ + +    Q+  G+ +L   +  HRDL + N +LD  E  T 
Sbjct: 109 ---DLLQFIRSPQRNPTVKDLISFGLQVARGMEYLAEQKFVHRDLAARNCMLD--ESFT- 162
Query: 382 PQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWT 441
             + + DFG +   +  L  +Y S  ++   +  L     AL +   + F   +KSD W+
Sbjct: 163 --VKVADFGLA---RDILDREYYS--VQQHRHARLPVKWTALESLQTYRFT--TKSDVWS 213
Query: 442 AGTVAYEIFGHDNPFYQSARNTDY-----EVNALPQLNTNVPEVMRRLVAKLLENDPSDR 496
            G + +E+     P Y+     D      +   LPQ     P+ + +++ +  E DP+ R
Sbjct: 214 FGVLLWELLTRGAPPYRHIDPFDLTHFLAQGRRLPQ-PEYCPDSLYQVMQQCWEADPAVR 272
Query: 497 PS 498
           P+
Sbjct: 273 PT 274

>pdb|3NAX|A Chain A, Pdk1 In Complex With Inhibitor Mp7 Length = 311

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 88/235 (37%), Gaps = 50/235 (21%)
Query: 271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYL 330
           HP  V ++F F D      D  L +  +          Y +N  L   ++K  +      
Sbjct: 88  HPFFVKLYFTFQD------DEKLYFGLS----------YAKNGELLKYIRKIGS-----F 126
Query: 331 RERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG 390
            E C +    E       ++  + +L+     HRDLK +NILL     N    + ITDFG
Sbjct: 127 DETCTRFYTAE-------IVSALEYLHGKGIIHRDLKPENILL-----NEDMHIQITDFG 174
Query: 391 SSYTNKSGLSMQYSSADI-ELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEI 449
           ++      LS +   A      G    ++PE+        S      SD W  G + Y++
Sbjct: 175 TAKV----LSPESKQARANSFVGTAQYVSPELLTEKSACKS------SDLWALGCIIYQL 224
Query: 450 FGHDNPFYQSARNTDYEVNALPQLNTNVPEVM----RRLVAKLLENDPSDRPSAE 500
                PF   A N       + +L  + PE      R LV KLL  D + R   E
Sbjct: 225 VAGLPPF--RAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGCE 277

>pdb|3CLY|A Chain A, Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase Domains Trapped In Trans-Phosphorylation Reaction Length = 334

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 74/164 (45%), Gaps = 30/164 (18%)
Query: 303 LNPTGGYGRNMSLFILMK-KYNTDLRNYLRER---------------CAQLSMHERVLLF 346
           +N  G   ++  L+++++     +LR YLR R                 Q++  + V   
Sbjct: 104 INLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCT 163
Query: 347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSA 406
            QL  G+ +L   +  HRDL + N+L+  +E+N    + I DFG +  + + +     + 
Sbjct: 164 YQLARGMEYLASQKCIHRDLAARNVLV--TENNV---MKIADFGLA-RDINNIDXXKKTT 217
Query: 407 DIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIF 450
           +  L   V  MAPE       LF  V   +SD W+ G + +EIF
Sbjct: 218 NGRL--PVKWMAPE------ALFDRVYTHQSDVWSFGVLMWEIF 253

>pdb|3B2T|A Chain A, Structure Of Phosphotransferase Length = 311

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 72/164 (43%), Gaps = 30/164 (18%)
Query: 303 LNPTGGYGRNMSLFILMK-KYNTDLRNYLRER---------------CAQLSMHERVLLF 346
           +N  G   ++  L+++++     +LR YLR R                 Q++  + V   
Sbjct: 91  INLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCT 150
Query: 347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSA 406
            QL  G+ +L   +  HRDL + N+L+  +E+N    + I DFG +   +   ++ Y   
Sbjct: 151 YQLARGMEYLASQKCIHRDLTARNVLV--TENNV---MKIADFGLA---RDINNIDYYKK 202
Query: 407 DIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIF 450
                  V  MAPE       LF  V   +SD W+ G + +EIF
Sbjct: 203 TTNGRLPVKWMAPE------ALFDRVYTHQSDVWSFGVLMWEIF 240

>pdb|4BC6|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10 Bound To Novel Bosutinib Isoform 1, Previously Thought To Be Bosutinib Length = 293

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 11/111 (9%)
Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
           Q+LE +  L+  R  HRDLK+ N+L+    D     + + DFG S  N   L  + S   
Sbjct: 117 QMLEALNFLHSKRIIHRDLKAGNVLMTLEGD-----IRLADFGVSAKNLKTLQKRDS--- 168
Query: 408 IELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQ 458
               G    MAPEV +      +  +Y K+D W+ G    E+   + P ++
Sbjct: 169 --FIGTPYWMAPEVVMCETMKDTPYDY-KADIWSLGITLIEMAQIEPPHHE 216

>pdb|1Z5M|A Chain A, Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl) Amino]phenyl]amino]-4-pyrimidinyl]amino]propyl]-2,2- Dimethylpropanediamide Complexed With Human Pdk1 Length = 286

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 88/235 (37%), Gaps = 50/235 (21%)
Query: 271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYL 330
           HP  V ++F F D      D  L +  +          Y +N  L   ++K  +      
Sbjct: 66  HPFFVKLYFTFQD------DEKLYFGLS----------YAKNGELLKYIRKIGS-----F 104
Query: 331 RERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG 390
            E C +    E       ++  + +L+     HRDLK +NILL     N    + ITDFG
Sbjct: 105 DETCTRFYTAE-------IVSALEYLHGKGIIHRDLKPENILL-----NEDMHIQITDFG 152
Query: 391 SSYTNKSGLSMQYSSADI-ELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEI 449
           ++      LS +   A      G    ++PE+        S      SD W  G + Y++
Sbjct: 153 TAKV----LSPESKQARANXFVGTAQYVSPELLTEKSACKS------SDLWALGCIIYQL 202
Query: 450 FGHDNPFYQSARNTDYEVNALPQLNTNVPEVM----RRLVAKLLENDPSDRPSAE 500
                PF   A N       + +L  + PE      R LV KLL  D + R   E
Sbjct: 203 VAGLPPF--RAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGCE 255

>pdb|3GC8|A Chain A, The Structure Of P38beta C162s In Complex With A Dihydroquinazolinone Length = 370

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 80/178 (44%), Gaps = 29/178 (16%)
Query: 314 SLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
            ++++      DL N ++  C  LS      L  QLL G+ +++     HRDLK  N+ +
Sbjct: 107 EVYLVTTLMGADLNNIVK--CQALSDEHVQFLVYQLLRGLKYIHSAGIIHRDLKPSNVAV 164
Query: 374 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVA---LMAPEVALATPGLFS 430
                N   +L I DF        GL+ Q   AD E+ G VA     APE+      + +
Sbjct: 165 -----NEDSELRILDF--------GLARQ---ADEEMTGYVATRWYRAPEI------MLN 202
Query: 431 FVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAK 487
           +++Y+++ D W+ G +  E+       +  +   D     +  + T  PEV+ ++ ++
Sbjct: 203 WMHYNQTVDIWSVGCIMAELL-QGKALFPGSDYIDQLKRIMEVVGTPSPEVLAKISSE 259

>pdb|2JDO|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl) Amide Length = 342

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 24/154 (15%)
Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
           +++  + +L+     +RD+K +N++LD         + ITDFG     K G+S     A 
Sbjct: 118 EIVSALEYLHSRDVVYRDIKLENLMLDKD-----GHIKITDFGLC---KEGIS---DGAT 166
Query: 408 IE-LGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDY 465
           ++   G    +APEV           +Y ++ D W  G V YE+     PFY       +
Sbjct: 167 MKXFCGTPEYLAPEVLEDN-------DYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLF 219
Query: 466 EVNALPQL---NTNVPEVMRRLVAKLLENDPSDR 496
           E+  + ++    T  PE  + L+A LL+ DP  R
Sbjct: 220 ELILMEEIRFPRTLSPEA-KSLLAGLLKKDPKQR 252

>pdb|3NAY|A Chain A, Pdk1 In Complex With Inhibitor Mp6 Length = 311

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 88/235 (37%), Gaps = 50/235 (21%)
Query: 271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYL 330
           HP  V ++F F D      D  L +  +          Y +N  L   ++K  +      
Sbjct: 88  HPFFVKLYFTFQD------DEKLYFGLS----------YAKNGELLKYIRKIGS-----F 126
Query: 331 RERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG 390
            E C +    E       ++  + +L+     HRDLK +NILL     N    + ITDFG
Sbjct: 127 DETCTRFYTAE-------IVSALEYLHGKGIIHRDLKPENILL-----NEDMHIQITDFG 174
Query: 391 SSYTNKSGLSMQYSSADIE-LGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEI 449
           ++      LS +   A      G    ++PE+        S      SD W  G + Y++
Sbjct: 175 TAKV----LSPESKQARANXFVGTAQYVSPELLTEKSACKS------SDLWALGCIIYQL 224
Query: 450 FGHDNPFYQSARNTDYEVNALPQLNTNVPEVM----RRLVAKLLENDPSDRPSAE 500
                PF   A N       + +L  + PE      R LV KLL  D + R   E
Sbjct: 225 VAGLPPF--RAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGCE 277

>pdb|3RI1|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase In Complex With Arq 069 Length = 313

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 72/164 (43%), Gaps = 30/164 (18%)
Query: 303 LNPTGGYGRNMSLFILMK-KYNTDLRNYLRER---------------CAQLSMHERVLLF 346
           +N  G   ++  L+++++     +LR YLR R                 Q++  + V   
Sbjct: 93  INLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCT 152
Query: 347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSA 406
            QL  G+ +L   +  HRDL + N+L+  +E+N    + I DFG +   +   ++ Y   
Sbjct: 153 YQLARGMEYLASQKCIHRDLAARNVLV--TENNV---MKIADFGLA---RDINNIDYYKK 204
Query: 407 DIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIF 450
                  V  MAPE       LF  V   +SD W+ G + +EIF
Sbjct: 205 TTNGRLPVKWMAPE------ALFDRVYTHQSDVWSFGVLMWEIF 242

>pdb|3GP0|A Chain A, Crystal Structure Of Human Mitogen Activated Protein Kinase 11 (p38 Beta) In Complex With Nilotinib Length = 348

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 81/180 (45%), Gaps = 33/180 (18%)
Query: 314 SLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
            ++++      DL N ++  C  LS      L  QLL G+ +++     HRDLK  N+ +
Sbjct: 99  EVYLVTTLMGADLNNIVK--CQALSDEHVQFLVYQLLRGLKYIHSAGIIHRDLKPSNVAV 156
Query: 374 --DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVA---LMAPEVALATPGL 428
             DC       +L I DF        GL+ Q   AD E+ G VA     APE+ L     
Sbjct: 157 NEDC-------ELRILDF--------GLARQ---ADEEMTGYVATRWYRAPEIML----- 193
Query: 429 FSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAK 487
            ++++Y+++ D W+ G +  E+       +  +   D     +  + T  PEV+ ++ ++
Sbjct: 194 -NWMHYNQTVDIWSVGCIMAELL-QGKALFPGSDYIDQLKRIMEVVGTPSPEVLAKISSE 251

>pdb|3GQL|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 326

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 30/164 (18%)
Query: 303 LNPTGGYGRNMSLFILMK-KYNTDLRNYLRER-------C--------AQLSMHERVLLF 346
           +N  G   ++  L+++++     +LR YL+ R       C         QLS  + V   
Sbjct: 97  INLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYCYNPSHNPEEQLSSKDLVSCA 156
Query: 347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSA 406
            Q+  G+ +L   +  HRDL + N+L+  +EDN    + I DFG +   +    + Y   
Sbjct: 157 YQVARGMEYLASKKCIHRDLAARNVLV--TEDNV---MKIADFGLA---RDIHHIDYYKK 208
Query: 407 DIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIF 450
                  V  MAPE       LF  +   +SD W+ G + +EIF
Sbjct: 209 TTNGRLPVKWMAPE------ALFDRIYTHQSDVWSFGVLLWEIF 246

>pdb|1BI8|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 326

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 69/160 (43%), Gaps = 29/160 (18%)
Query: 311 RNMSLFILMKKYNTDLRNYLRERCAQLSMHERVL--LFTQLLEGVTHLNMHRTAHRDLKS 368
           R   L ++ +  + DL  YL ++  +  +    +  +  QLL G+  L+ HR  HRDLK 
Sbjct: 90  RETKLTLVFEHVDQDLTTYL-DKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKP 148
Query: 369 DNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVAL----A 424
            NIL+  S      Q+ + DFG +        M  +S  + L       APEV L    A
Sbjct: 149 QNILVTSS-----GQIKLADFGLARI--YSFQMALTSVVVTLW----YRAPEVLLQSSYA 197
Query: 425 TPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD 464
           TP           D W+ G +  E+F    P ++ + + D
Sbjct: 198 TP----------VDLWSVGCIFAEMFRR-KPLFRGSSDVD 226

>pdb|3NUN|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lead Compound Length = 292

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 88/235 (37%), Gaps = 50/235 (21%)
Query: 271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYL 330
           HP  V ++F F D      D  L +  +          Y +N  L   ++K  +      
Sbjct: 73  HPFFVKLYFTFQD------DEKLYFGLS----------YAKNGELLKYIRKIGS-----F 111
Query: 331 RERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG 390
            E C +    E       ++  + +L+     HRDLK +NILL     N    + ITDFG
Sbjct: 112 DETCTRFYTAE-------IVSALEYLHGKGIIHRDLKPENILL-----NEDMHIQITDFG 159
Query: 391 SSYTNKSGLSMQYSSADIE-LGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEI 449
           ++      LS +   A      G    ++PE+        S      SD W  G + Y++
Sbjct: 160 TAKV----LSPESKQARANXFVGTAQYVSPELLTEKSACKS------SDLWALGCIIYQL 209
Query: 450 FGHDNPFYQSARNTDYEVNALPQLNTNVPEVM----RRLVAKLLENDPSDRPSAE 500
                PF   A N       + +L  + PE      R LV KLL  D + R   E
Sbjct: 210 VAGLPPF--RAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGCE 262

>pdb|2PVF|A Chain A, Crystal Structure Of Tyrosine Phosphorylated Activated Fgf Receptor 2 (Fgfr2) Kinase Domain In Complex With Atp Analog And Substrate Peptide Length = 334

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 74/164 (45%), Gaps = 30/164 (18%)
Query: 303 LNPTGGYGRNMSLFILMK-KYNTDLRNYLRER---------------CAQLSMHERVLLF 346
           +N  G   ++  L+++++     +LR YLR R                 Q++  + V   
Sbjct: 104 INLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEXSYDINRVPEEQMTFKDLVSCT 163
Query: 347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSA 406
            QL  G+ +L   +  HRDL + N+L+  +E+N    + I DFG +  + + +     + 
Sbjct: 164 YQLARGMEYLASQKCIHRDLAARNVLV--TENNV---MKIADFGLA-RDINNIDXXKKTT 217
Query: 407 DIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIF 450
           +  L   V  MAPE       LF  V   +SD W+ G + +EIF
Sbjct: 218 NGRL--PVKWMAPE------ALFDRVYTHQSDVWSFGVLMWEIF 253

>pdb|3VUL|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 67/163 (41%), Gaps = 30/163 (18%)
Query: 340 HERV-LLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSG 398
           HER+  L  Q+L G+ HL+     HRDLK  NI++    D T   L I DFG + T    
Sbjct: 125 HERMSYLLYQMLVGIKHLHSAGIIHRDLKPSNIVVKS--DAT---LKILDFGLART---- 175
Query: 399 LSMQYSSADIELGGNVALMAPEVA---LATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDN 454
                        G   +M P V       P +   + Y ++ D W+ G +  E+     
Sbjct: 176 ------------AGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGVIMGEMI-KGG 222
Query: 455 PFYQSARNTDYEVNALPQLNTNVPEVMRRL---VAKLLENDPS 494
             +    + D     + QL T  PE M++L   V   +EN P 
Sbjct: 223 VLFPGTDHIDQWNKVIEQLGTPSPEFMKKLQPTVRTYVENRPK 265

>pdb|3VUM|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M7 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 78/189 (41%), Gaps = 34/189 (17%)
Query: 314 SLFILMKKYNTDLRNYLRERCAQLSMHERV-LLFTQLLEGVTHLNMHRTAHRDLKSDNIL 372
            ++I+M+  + +L   ++        HER+  L  Q+L G+ HL+     HRDLK  NI+
Sbjct: 103 DVYIVMELMDANLSQVIQMELD----HERMSYLLYQMLVGIKHLHSAGIIHRDLKPSNIV 158
Query: 373 LDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVA---LATPGLF 429
           +    D T   L I DFG + T                 G   +M P V       P + 
Sbjct: 159 VKS--DAT---LKILDFGLART----------------AGTSFMMTPYVVTRYYRAPEVI 197
Query: 430 SFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRL---V 485
             + Y ++ D W+ G +  E+       +    + D     + QL T  PE M++L   V
Sbjct: 198 LGMGYKENVDIWSVGVIMGEMI-KGGVLFPGTDHIDQWNKVIEQLGTPSPEFMKKLQPTV 256
Query: 486 AKLLENDPS 494
              +EN P 
Sbjct: 257 RTYVENRPK 265

>pdb|1GJO|A Chain A, The Fgfr2 Tyrosine Kinase Domain Length = 316

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 72/164 (43%), Gaps = 30/164 (18%)
Query: 303 LNPTGGYGRNMSLFILMK-KYNTDLRNYLRER---------------CAQLSMHERVLLF 346
           +N  G   ++  L+++++     +LR YLR R                 Q++  + V   
Sbjct: 96  INLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCT 155
Query: 347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSA 406
            QL  G+ +L   +  HRDL + N+L+  +E+N    + I DFG +   +   ++ Y   
Sbjct: 156 YQLARGMEYLASQKCIHRDLAARNVLV--TENNV---MKIADFGLA---RDINNIDYYKK 207
Query: 407 DIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIF 450
                  V  MAPE       LF  V   +SD W+ G + +EIF
Sbjct: 208 TTNGRLPVKWMAPE------ALFDRVYTHQSDVWSFGVLMWEIF 245

>pdb|2PZP|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K526e Mutation Responsible For Crouzon Syndrome Length = 324

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 72/164 (43%), Gaps = 30/164 (18%)
Query: 303 LNPTGGYGRNMSLFILMK-KYNTDLRNYLRER---------------CAQLSMHERVLLF 346
           +N  G   ++  L+++++     +LR YLR R                 Q++  + V   
Sbjct: 104 INLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCT 163
Query: 347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSA 406
            QL  G+ +L   +  HRDL + N+L+  +E+N    + I DFG +   +   ++ Y   
Sbjct: 164 YQLARGMEYLASQKCIHRDLAARNVLV--TENNV---MKIADFGLA---RDINNIDYYKK 215
Query: 407 DIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIF 450
                  V  MAPE       LF  V   +SD W+ G + +EIF
Sbjct: 216 TTNGRLPVKWMAPE------ALFDRVYTHQSDVWSFGVLMWEIF 253

>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor Length = 303

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 20/143 (13%)
Query: 311 RNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFT-QLLEGVTHLNMHRTAHRDLKSD 369
           RN+ L +    Y + LR+YL++   ++  H ++L +T Q+ +G+ +L   R  HRDL + 
Sbjct: 90  RNLKLIMEYLPYGS-LRDYLQKHKERID-HIKLLQYTSQICKGMEYLGTKRYIHRDLATR 147
Query: 370 NILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALM--APEVALATPG 427
           NIL++        ++ I DFG +      L        ++  G   +   APE    T  
Sbjct: 148 NILVENEN-----RVKIGDFGLTKV----LPQDKEXXKVKEPGESPIFWYAPES--LTES 196
Query: 428 LFSFVNYSKSDAWTAGTVAYEIF 450
            FS      SD W+ G V YE+F
Sbjct: 197 KFSVA----SDVWSFGVVLYELF 215

>pdb|3QFV|A Chain A, Mrck Beta In Complex With Tpca-1 Length = 415

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 19/136 (13%)
Query: 362 AHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEV 421
            HRD+K DN+LLD +       + + DFGS        ++Q S A     G    ++PE+
Sbjct: 197 VHRDIKPDNVLLDVN-----GHIRLADFGSCLKMNDDGTVQSSVA----VGTPDYISPEI 247
Query: 422 ALA-TPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY-------EVNALPQL 473
             A   G+  +    + D W+ G   YE+   + PFY  +    Y       E    P  
Sbjct: 248 LQAMEDGMGKYG--PECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHEERFQFPSH 305
Query: 474 NTNVPEVMRRLVAKLL 489
            T+V E  + L+ +L+
Sbjct: 306 VTDVSEEAKDLIQRLI 321

>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a) Length = 306

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 76/181 (41%), Gaps = 21/181 (11%)
Query: 323 NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 382
           N  L  +LR+   + ++ + V +   +  G+ +L+     HRDL + NIL+     N+  
Sbjct: 114 NGSLDAFLRKNDGRFTVIQLVGMLRGIGSGMKYLSDMSAVHRDLAARNILV-----NSNL 168
Query: 383 QLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY-SKSDAWT 441
              ++DFG S   +      Y++     GG +      +    P   ++  + S SD W+
Sbjct: 169 VCKVSDFGMSRVLEDDPEAAYTTR----GGKIP-----IRWTAPEAIAYRKFTSASDVWS 219
Query: 442 AGTVAYEIFGHDNPFYQSARNTDY-----EVNALPQLNTNVPEVMRRLVAKLLENDPSDR 496
            G V +E+  +    Y    N D      E   LP    + P  + +L+    + + SDR
Sbjct: 220 YGIVMWEVMSYGERPYWDMSNQDVIKAIEEGYRLPP-PMDCPIALHQLMLDCWQKERSDR 278
Query: 497 P 497
           P
Sbjct: 279 P 279

>pdb|1UU9|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Bim-3 Length = 286

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 88/235 (37%), Gaps = 50/235 (21%)
Query: 271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYL 330
           HP  V ++F F D      D  L +  +          Y +N  L   ++K  +      
Sbjct: 68  HPFFVKLYFTFQD------DEKLYFGLS----------YAKNGELLKYIRKIGS-----F 106
Query: 331 RERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG 390
            E C +    E       ++  + +L+     HRDLK +NILL     N    + ITDFG
Sbjct: 107 DETCTRFYTAE-------IVSALEYLHGKGIIHRDLKPENILL-----NEDMHIQITDFG 154
Query: 391 SSYTNKSGLSMQYSSADI-ELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEI 449
           ++      LS +   A      G    ++PE+        S      SD W  G + Y++
Sbjct: 155 TAKV----LSPESKQARANXFVGTAQYVSPELLTEKSACKS------SDLWALGCIIYQL 204
Query: 450 FGHDNPFYQSARNTDYEVNALPQLNTNVPEVM----RRLVAKLLENDPSDRPSAE 500
                PF   A N       + +L  + PE      R LV KLL  D + R   E
Sbjct: 205 VAGLPPF--RAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGCE 257

>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent 2,8-Diaryl Quinoxaline Inhibitor Length = 295

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 20/143 (13%)
Query: 311 RNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFT-QLLEGVTHLNMHRTAHRDLKSD 369
           RN+ L +    Y + LR+YL++   ++  H ++L +T Q+ +G+ +L   R  HRDL + 
Sbjct: 86  RNLKLIMEYLPYGS-LRDYLQKHKERID-HIKLLQYTSQICKGMEYLGTKRYIHRDLATR 143
Query: 370 NILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALM--APEVALATPG 427
           NIL++        ++ I DFG +      L        ++  G   +   APE    T  
Sbjct: 144 NILVENEN-----RVKIGDFGLTKV----LPQDKEXXKVKEPGESPIFWYAPES--LTES 192
Query: 428 LFSFVNYSKSDAWTAGTVAYEIF 450
            FS      SD W+ G V YE+F
Sbjct: 193 KFSVA----SDVWSFGVVLYELF 211

>pdb|1H1W|A Chain A, High Resolution Crystal Structure Of The Human Pdk1 Catalytic Domain Length = 289

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 88/235 (37%), Gaps = 50/235 (21%)
Query: 271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYL 330
           HP  V ++F F D      D  L +  +          Y +N  L   ++K  +      
Sbjct: 69  HPFFVKLYFTFQD------DEKLYFGLS----------YAKNGELLKYIRKIGS-----F 107
Query: 331 RERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG 390
            E C +    E       ++  + +L+     HRDLK +NILL     N    + ITDFG
Sbjct: 108 DETCTRFYTAE-------IVSALEYLHGKGIIHRDLKPENILL-----NEDMHIQITDFG 155
Query: 391 SSYTNKSGLSMQYSSADI-ELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEI 449
           ++      LS +   A      G    ++PE+        S      SD W  G + Y++
Sbjct: 156 TAKV----LSPESKQARANXFVGTAQYVSPELLTEKSACKS------SDLWALGCIIYQL 205
Query: 450 FGHDNPFYQSARNTDYEVNALPQLNTNVPEVM----RRLVAKLLENDPSDRPSAE 500
                PF   A N       + +L  + PE      R LV KLL  D + R   E
Sbjct: 206 VAGLPPF--RAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGCE 258

>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine Inhibitor Length = 301

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 20/143 (13%)
Query: 311 RNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFT-QLLEGVTHLNMHRTAHRDLKSD 369
           RN+ L +    Y + LR+YL++   ++  H ++L +T Q+ +G+ +L   R  HRDL + 
Sbjct: 86  RNLKLIMEYLPYGS-LRDYLQKHKERID-HIKLLQYTSQICKGMEYLGTKRYIHRDLATR 143
Query: 370 NILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALM--APEVALATPG 427
           NIL++        ++ I DFG +      L        ++  G   +   APE    T  
Sbjct: 144 NILVENEN-----RVKIGDFGLTKV----LPQDKEXXKVKEPGESPIFWYAPES--LTES 192
Query: 428 LFSFVNYSKSDAWTAGTVAYEIF 450
            FS      SD W+ G V YE+F
Sbjct: 193 KFSVA----SDVWSFGVVLYELF 211

>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors Length = 293

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 20/143 (13%)
Query: 311 RNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFT-QLLEGVTHLNMHRTAHRDLKSD 369
           RN+ L +    Y + LR+YL++   ++  H ++L +T Q+ +G+ +L   R  HRDL + 
Sbjct: 85  RNLKLIMEYLPYGS-LRDYLQKHKERID-HIKLLQYTSQICKGMEYLGTKRYIHRDLATR 142
Query: 370 NILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALM--APEVALATPG 427
           NIL++        ++ I DFG +      L        ++  G   +   APE    T  
Sbjct: 143 NILVENEN-----RVKIGDFGLTKV----LPQDKEXXKVKEPGESPIFWYAPES--LTES 191
Query: 428 LFSFVNYSKSDAWTAGTVAYEIF 450
            FS      SD W+ G V YE+F
Sbjct: 192 KFSVA----SDVWSFGVVLYELF 210

>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A Potent And Specific Pan-Janus Kinase Inhibitor Length = 293

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 20/143 (13%)
Query: 311 RNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFT-QLLEGVTHLNMHRTAHRDLKSD 369
           RN+ L +    Y + LR+YL++   ++  H ++L +T Q+ +G+ +L   R  HRDL + 
Sbjct: 84  RNLKLIMEYLPYGS-LRDYLQKHKERID-HIKLLQYTSQICKGMEYLGTKRYIHRDLATR 141
Query: 370 NILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALM--APEVALATPG 427
           NIL++        ++ I DFG +      L        ++  G   +   APE    T  
Sbjct: 142 NILVENEN-----RVKIGDFGLTKV----LPQDKEXXKVKEPGESPIFWYAPES--LTES 190
Query: 428 LFSFVNYSKSDAWTAGTVAYEIF 450
            FS      SD W+ G V YE+F
Sbjct: 191 KFSVA----SDVWSFGVVLYELF 209

>pdb|3OCB|A Chain A, Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor Length = 341

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 69/161 (42%), Gaps = 26/161 (16%)
Query: 363 HRDLKSDNILLDCSEDNTCPQLVITDFGSSYTN-KSGLSMQYSSADIELGGNVALMAPEV 421
           +RDLK +N++LD         + ITDFG      K G +M+         G    +APEV
Sbjct: 133 YRDLKLENLMLDKD-----GHIKITDFGLCKEGIKDGATMK------XFCGTPEYLAPEV 181
Query: 422 ALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQL---NTNV 477
                      +Y ++ D W  G V YE+     PFY       +E+  + ++    T  
Sbjct: 182 LEDN-------DYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRFPRTLG 234
Query: 478 PEVMRRLVAKLLENDPSDR--PSAELAATVCQLYLWAPKHW 516
           PE  + L++ LL+ DP  R    +E A  + Q   +A   W
Sbjct: 235 PEA-KSLLSGLLKKDPKQRLGGGSEDAKEIMQHRFFAGIVW 274

>pdb|3TKU|A Chain A, Mrck Beta In Complex With Fasudil Length = 433

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 19/136 (13%)
Query: 362 AHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEV 421
            HRD+K DN+LLD +       + + DFGS        ++Q S A     G    ++PE+
Sbjct: 213 VHRDIKPDNVLLDVN-----GHIRLADFGSCLKMNDDGTVQSSVA----VGTPDYISPEI 263
Query: 422 ALA-TPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY-------EVNALPQL 473
             A   G+  +    + D W+ G   YE+   + PFY  +    Y       E    P  
Sbjct: 264 LQAMEDGMGKYG--PECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHEERFQFPSH 321
Query: 474 NTNVPEVMRRLVAKLL 489
            T+V E  + L+ +L+
Sbjct: 322 VTDVSEEAKDLIQRLI 337

>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 20/143 (13%)
Query: 311 RNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFT-QLLEGVTHLNMHRTAHRDLKSD 369
           RN+ L +    Y + LR+YL++   ++  H ++L +T Q+ +G+ +L   R  HRDL + 
Sbjct: 93  RNLKLIMEYLPYGS-LRDYLQKHKERID-HIKLLQYTSQICKGMEYLGTKRYIHRDLATR 150
Query: 370 NILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALM--APEVALATPG 427
           NIL++        ++ I DFG +      L        ++  G   +   APE    T  
Sbjct: 151 NILVENEN-----RVKIGDFGLTKV----LPQDKEXXKVKEPGESPIFWYAPES--LTES 199
Query: 428 LFSFVNYSKSDAWTAGTVAYEIF 450
            FS      SD W+ G V YE+F
Sbjct: 200 KFSVA----SDVWSFGVVLYELF 218

>pdb|3HRC|A Chain A, Crystal Structure Of A Mutant Of Human Pdk1 Kinase Domain In Complex With Atp Length = 311

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 88/235 (37%), Gaps = 50/235 (21%)
Query: 271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYL 330
           HP  V ++F F D      D  L +  +          Y +N  L   ++K  +      
Sbjct: 91  HPFFVKLYFTFQD------DEKLYFGLS----------YAKNGELLKYIRKIGS-----F 129
Query: 331 RERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG 390
            E C +    E       ++  + +L+     HRDLK +NILL     N    + ITDFG
Sbjct: 130 DETCTRFYTAE-------IVSALEYLHGKGIIHRDLKPENILL-----NEDMHIQITDFG 177
Query: 391 SSYTNKSGLSMQYSSADIE-LGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEI 449
           ++      LS +   A      G    ++PE+        S      SD W  G + Y++
Sbjct: 178 TAKV----LSPESKQARANXFVGTAQYVSPELLTEKSACKS------SDLWALGCIIYQL 227
Query: 450 FGHDNPFYQSARNTDYEVNALPQLNTNVPEVM----RRLVAKLLENDPSDRPSAE 500
                PF   A N       + +L  + PE      R LV KLL  D + R   E
Sbjct: 228 VAGLPPF--RAGNEGLIFAKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGCE 280

>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain Length = 298

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 67/143 (46%), Gaps = 20/143 (13%)
Query: 311 RNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFT-QLLEGVTHLNMHRTAHRDLKSD 369
           RN+ L +    Y + LR+YL+    ++  H ++L +T Q+ +G+ +L   R  HRDL + 
Sbjct: 89  RNLKLIMEYLPYGS-LRDYLQAHAERID-HIKLLQYTSQICKGMEYLGTKRYIHRDLATR 146
Query: 370 NILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALM--APEVALATPG 427
           NIL++        ++ I DFG +      L        ++  G   +   APE    T  
Sbjct: 147 NILVENEN-----RVKIGDFGLTKV----LPQDKEXXKVKEPGESPIFWYAPES--LTES 195
Query: 428 LFSFVNYSKSDAWTAGTVAYEIF 450
            FS      SD W+ G V YE+F
Sbjct: 196 KFSVA----SDVWSFGVVLYELF 214

>pdb|3LXN|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 318

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 57/129 (44%), Gaps = 19/129 (14%)
Query: 326 LRNYLRERCAQLSMHERVLLFTQ-LLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           LR+YL      L+   ++LLF Q + EG+ +L+     HRDL + N+LLD        +L
Sbjct: 122 LRDYLPRHSIGLA---QLLLFAQQICEGMAYLHAQHYIHRDLAARNVLLDND------RL 172
Query: 385 V-ITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAG 443
           V I DFG +     G        D +    V   APE       L  +  Y  SD W+ G
Sbjct: 173 VKIGDFGLAKAVPEGHEXYRVREDGD--SPVFWYAPEC------LKEYKFYYASDVWSFG 224
Query: 444 TVAYEIFGH 452
              YE+  H
Sbjct: 225 VTLYELLTH 233

>pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor Length = 292

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 84/200 (42%), Gaps = 17/200 (8%)
Query: 315 LFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLD 374
           L +L    + DLRN++R      ++ + +    Q+ +G+ +L   +  HRDL + N +LD
Sbjct: 100 LVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKFVHRDLAARNCMLD 159
Query: 375 CSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY 434
             E  T   + + DFG +   +     +Y S   + G  +    P   +A   L +    
Sbjct: 160 --EKFT---VKVADFGLA---RDMYDKEYYSVHNKTGAKL----PVKWMALESLQTQKFT 207
Query: 435 SKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEV----MRRLVAKLLE 490
           +KSD W+ G + +E+     P Y      D  V  L       PE     +  ++ K   
Sbjct: 208 TKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWH 267
Query: 491 NDPSDRPS-AELAATVCQLY 509
                RPS +EL + +  ++
Sbjct: 268 PKAEMRPSFSELVSRISAIF 287

>pdb|3VUK|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M5 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 67/163 (41%), Gaps = 30/163 (18%)
Query: 340 HERV-LLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSG 398
           HER+  L  Q+L G+ HL+     HRDLK  NI++    D T   L I DFG + T    
Sbjct: 125 HERMSYLLYQMLVGIKHLHSAGIIHRDLKPSNIVVKS--DAT---LKILDFGLART---- 175
Query: 399 LSMQYSSADIELGGNVALMAPEVA---LATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDN 454
                        G   +M P V       P +   + Y ++ D W+ G +  E+     
Sbjct: 176 ------------AGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMI-KGG 222
Query: 455 PFYQSARNTDYEVNALPQLNTNVPEVMRRL---VAKLLENDPS 494
             +    + D     + QL T  PE M++L   V   +EN P 
Sbjct: 223 VLFPGTDHIDQWNKVIEQLGTPSPEFMKKLQPTVRTYVENRPK 265

>pdb|2PZR|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K641r Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 72/164 (43%), Gaps = 30/164 (18%)
Query: 303 LNPTGGYGRNMSLFILMK-KYNTDLRNYLRER---------------CAQLSMHERVLLF 346
           +N  G   ++  L+++++     +LR YLR R                 Q++  + V   
Sbjct: 104 INLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCT 163
Query: 347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSA 406
            QL  G+ +L   +  HRDL + N+L+  +E+N    + I DFG +   +   ++ Y   
Sbjct: 164 YQLARGMEYLASQKCIHRDLAARNVLV--TENNV---MRIADFGLA---RDINNIDYYKK 215
Query: 407 DIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIF 450
                  V  MAPE       LF  V   +SD W+ G + +EIF
Sbjct: 216 TTNGRLPVKWMAPE------ALFDRVYTHQSDVWSFGVLMWEIF 253

>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 326

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 20/143 (13%)
Query: 311 RNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFT-QLLEGVTHLNMHRTAHRDLKSD 369
           RN+ L +    Y + LR+YL++   ++  H ++L +T Q+ +G+ +L   R  HRDL + 
Sbjct: 117 RNLKLIMEYLPYGS-LRDYLQKHKERID-HIKLLQYTSQICKGMEYLGTKRYIHRDLATR 174
Query: 370 NILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALM--APEVALATPG 427
           NIL++        ++ I DFG +      L        ++  G   +   APE    T  
Sbjct: 175 NILVENEN-----RVKIGDFGLTKV----LPQDKEXXKVKEPGESPIFWYAPES--LTES 223
Query: 428 LFSFVNYSKSDAWTAGTVAYEIF 450
            FS      SD W+ G V YE+F
Sbjct: 224 KFSVA----SDVWSFGVVLYELF 242

>pdb|4GV1|A Chain A, Pkb Alpha In Complex With Azd5363 Length = 340

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 69/161 (42%), Gaps = 26/161 (16%)
Query: 363 HRDLKSDNILLDCSEDNTCPQLVITDFGSSYTN-KSGLSMQYSSADIELGGNVALMAPEV 421
           +RDLK +N++LD         + ITDFG      K G +M+         G    +APEV
Sbjct: 132 YRDLKLENLMLDKD-----GHIKITDFGLCKEGIKDGATMK------XFCGTPEYLAPEV 180
Query: 422 ALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQL---NTNV 477
                      +Y ++ D W  G V YE+     PFY       +E+  + ++    T  
Sbjct: 181 LEDN-------DYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRFPRTLG 233
Query: 478 PEVMRRLVAKLLENDPSDR--PSAELAATVCQLYLWAPKHW 516
           PE  + L++ LL+ DP  R    +E A  + Q   +A   W
Sbjct: 234 PEA-KSLLSGLLKKDPKQRLGGGSEDAKEIMQHRFFAGIVW 273

>pdb|3VUH|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M3 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 67/163 (41%), Gaps = 30/163 (18%)
Query: 340 HERV-LLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSG 398
           HER+  L  Q+L G+ HL+     HRDLK  NI++    D T   L I DFG + T    
Sbjct: 125 HERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVV--KSDAT---LKILDFGLART---- 175
Query: 399 LSMQYSSADIELGGNVALMAPEVA---LATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDN 454
                        G   +M P V       P +   + Y ++ D W+ G +  E+     
Sbjct: 176 ------------AGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMI-KGG 222
Query: 455 PFYQSARNTDYEVNALPQLNTNVPEVMRRL---VAKLLENDPS 494
             +    + D     + QL T  PE M++L   V   +EN P 
Sbjct: 223 VLFPGTDHIDQWNKVIEQLGTPSPEFMKKLQPTVRTYVENRPK 265

>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8 Length = 298

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 20/143 (13%)
Query: 311 RNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFT-QLLEGVTHLNMHRTAHRDLKSD 369
           RN+ L +    Y + LR+YL++   ++  H ++L +T Q+ +G+ +L   R  HRDL + 
Sbjct: 89  RNLKLIMEYLPYGS-LRDYLQKHKERID-HIKLLQYTSQICKGMEYLGTKRYIHRDLATR 146
Query: 370 NILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALM--APEVALATPG 427
           NIL++        ++ I DFG +      L        ++  G   +   APE    T  
Sbjct: 147 NILVENEN-----RVKIGDFGLTKV----LPQDKEXXKVKEPGESPIFWYAPES--LTES 195
Query: 428 LFSFVNYSKSDAWTAGTVAYEIF 450
            FS      SD W+ G V YE+F
Sbjct: 196 KFSVA----SDVWSFGVVLYELF 214

>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors Length = 311

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 20/143 (13%)
Query: 311 RNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFT-QLLEGVTHLNMHRTAHRDLKSD 369
           RN+ L +    Y + LR+YL++   ++  H ++L +T Q+ +G+ +L   R  HRDL + 
Sbjct: 104 RNLKLIMEYLPYGS-LRDYLQKHKERID-HIKLLQYTSQICKGMEYLGTKRYIHRDLATR 161
Query: 370 NILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALM--APEVALATPG 427
           NIL++        ++ I DFG +      L        ++  G   +   APE    T  
Sbjct: 162 NILVENEN-----RVKIGDFGLTKV----LPQDKEXXKVKEPGESPIFWYAPES--LTES 210
Query: 428 LFSFVNYSKSDAWTAGTVAYEIF 450
            FS      SD W+ G V YE+F
Sbjct: 211 KFSVA----SDVWSFGVVLYELF 229

>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2 Length = 301

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 20/143 (13%)
Query: 311 RNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFT-QLLEGVTHLNMHRTAHRDLKSD 369
           RN+ L +    Y + LR+YL++   ++  H ++L +T Q+ +G+ +L   R  HRDL + 
Sbjct: 92  RNLKLIMEYLPYGS-LRDYLQKHKERID-HIKLLQYTSQICKGMEYLGTKRYIHRDLATR 149
Query: 370 NILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALM--APEVALATPG 427
           NIL++        ++ I DFG +      L        ++  G   +   APE    T  
Sbjct: 150 NILVENEN-----RVKIGDFGLTKV----LPQDKEXXKVKEPGESPIFWYAPES--LTES 198
Query: 428 LFSFVNYSKSDAWTAGTVAYEIF 450
            FS      SD W+ G V YE+F
Sbjct: 199 KFSVA----SDVWSFGVVLYELF 217

>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective Inhibitors Of Jak2 Length = 313

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 20/143 (13%)
Query: 311 RNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFT-QLLEGVTHLNMHRTAHRDLKSD 369
           RN+ L +    Y + LR+YL++   ++  H ++L +T Q+ +G+ +L   R  HRDL + 
Sbjct: 104 RNLKLIMEYLPYGS-LRDYLQKHKERID-HIKLLQYTSQICKGMEYLGTKRYIHRDLATR 161
Query: 370 NILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALM--APEVALATPG 427
           NIL++        ++ I DFG +      L        ++  G   +   APE    T  
Sbjct: 162 NILVENEN-----RVKIGDFGLTKV----LPQDKEXXKVKEPGESPIFWYAPES--LTES 210
Query: 428 LFSFVNYSKSDAWTAGTVAYEIF 450
            FS      SD W+ G V YE+F
Sbjct: 211 KFSVA----SDVWSFGVVLYELF 229

>pdb|3VUI|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M2 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 67/163 (41%), Gaps = 30/163 (18%)
Query: 340 HERV-LLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSG 398
           HER+  L  Q+L G+ HL+     HRDLK  NI++    D T   L I DFG + T    
Sbjct: 125 HERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVV--KSDAT---LKILDFGLART---- 175
Query: 399 LSMQYSSADIELGGNVALMAPEVA---LATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDN 454
                        G   +M P V       P +   + Y ++ D W+ G +  E+     
Sbjct: 176 ------------AGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMI-KGG 222
Query: 455 PFYQSARNTDYEVNALPQLNTNVPEVMRRL---VAKLLENDPS 494
             +    + D     + QL T  PE M++L   V   +EN P 
Sbjct: 223 VLFPGTDHIDQWNKVIEQLGTPSPEFMKKLQPTVRTYVENRPK 265

>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8 Length = 300

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 20/143 (13%)
Query: 311 RNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFT-QLLEGVTHLNMHRTAHRDLKSD 369
           RN+ L +    Y + LR+YL++   ++  H ++L +T Q+ +G+ +L   R  HRDL + 
Sbjct: 91  RNLKLIMEYLPYGS-LRDYLQKHKERID-HIKLLQYTSQICKGMEYLGTKRYIHRDLATR 148
Query: 370 NILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALM--APEVALATPG 427
           NIL++        ++ I DFG +      L        ++  G   +   APE    T  
Sbjct: 149 NILVENEN-----RVKIGDFGLTKV----LPQDKEXXKVKEPGESPIFWYAPES--LTES 197
Query: 428 LFSFVNYSKSDAWTAGTVAYEIF 450
            FS      SD W+ G V YE+F
Sbjct: 198 KFSVA----SDVWSFGVVLYELF 216

>pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment Inhibitor 1f8 Length = 316

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 88/235 (37%), Gaps = 50/235 (21%)
Query: 271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYL 330
           HP  V ++F F D      D  L +  +          Y +N  L   ++K  +      
Sbjct: 96  HPFFVKLYFCFQD------DEKLYFGLS----------YAKNGELLKYIRKIGS-----F 134
Query: 331 RERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG 390
            E C +    E       ++  + +L+     HRDLK +NILL     N    + ITDFG
Sbjct: 135 DETCTRFYTAE-------IVSALEYLHGKGIIHRDLKPENILL-----NEDMHIQITDFG 182
Query: 391 SSYTNKSGLSMQYSSADI-ELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEI 449
           ++      LS +   A      G    ++PE+        S      SD W  G + Y++
Sbjct: 183 TAKV----LSPESKQARANXFVGTAQYVSPELLTEKSACKS------SDLWALGCIIYQL 232
Query: 450 FGHDNPFYQSARNTDYEVNALPQLNTNVPEVM----RRLVAKLLENDPSDRPSAE 500
                PF   A N       + +L  + PE      R LV KLL  D + R   E
Sbjct: 233 VAGLPPF--RAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGCE 285

>pdb|4G3D|A Chain A, Crystal Structure Of Human Nf-kappab Inducing Kinase (nik) Length = 371

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 73/173 (42%), Gaps = 19/173 (10%)
Query: 341 ERVLLF-TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYT-NKSG 398
           +R L +  Q LEG+ +L+  R  H D+K+DN+LL  S D +     + DFG +      G
Sbjct: 185 DRALYYLGQALEGLEYLHSRRILHGDVKADNVLL--SSDGS--HAALCDFGHAVCLQPDG 240
Query: 399 LSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQ 458
           L     + D  + G    MAPEV L           +K D W++  +   +    +P+ Q
Sbjct: 241 LGKSLLTGDY-IPGTETHMAPEVVLGR------SCDAKVDVWSSCCMMLHMLNGCHPWTQ 293
Query: 459 SARNT-DYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRP-----SAELAATV 505
             R     ++ + P     +P     L A+ ++      P     +AEL   V
Sbjct: 294 FFRGPLCLKIASEPPPVREIPPSCAPLTAQAIQEGLRKEPIHRVSAAELGGKV 346

>pdb|3CQU|A Chain A, Crystal Structure Of Akt-1 Complexed With Substrate Peptide And Inhibitor Length = 342

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 69/161 (42%), Gaps = 26/161 (16%)
Query: 363 HRDLKSDNILLDCSEDNTCPQLVITDFGSSYTN-KSGLSMQYSSADIELGGNVALMAPEV 421
           +RDLK +N++LD         + ITDFG      K G +M+         G    +APEV
Sbjct: 134 YRDLKLENLMLDKD-----GHIKITDFGLCKEGIKDGATMK------XFCGTPEYLAPEV 182
Query: 422 ALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQL---NTNV 477
                      +Y ++ D W  G V YE+     PFY       +E+  + ++    T  
Sbjct: 183 LEDN-------DYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRFPRTLG 235
Query: 478 PEVMRRLVAKLLENDPSDR--PSAELAATVCQLYLWAPKHW 516
           PE  + L++ LL+ DP  R    +E A  + Q   +A   W
Sbjct: 236 PEA-KSLLSGLLKKDPKQRLGGGSEDAKEIMQHRFFAGIVW 275

>pdb|2XCH|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 88/235 (37%), Gaps = 50/235 (21%)
Query: 271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYL 330
           HP  V ++F F D      D  L +  +          Y +N  L   ++K  +      
Sbjct: 89  HPFFVKLYFTFQD------DEKLYFGLS----------YAKNGELLKYIRKIGS-----F 127
Query: 331 RERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG 390
            E C +    E       ++  + +L+     HRDLK +NILL     N    + ITDFG
Sbjct: 128 DETCTRFYTAE-------IVSALEYLHGKGIIHRDLKPENILL-----NEDMHIQITDFG 175
Query: 391 SSYTNKSGLSMQYSSADIE-LGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEI 449
           ++      LS +   A      G    ++PE+        S      SD W  G + Y++
Sbjct: 176 TAKV----LSPESKQARANXFVGTAQYVSPELLTEKSACKS------SDLWALGCIIYQL 225
Query: 450 FGHDNPFYQSARNTDYEVNALPQLNTNVPEVM----RRLVAKLLENDPSDRPSAE 500
                PF   A N       + +L  + PE      R LV KLL  D + R   E
Sbjct: 226 VAGLPPF--RAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGCE 278

>pdb|3KL8|A Chain A, Camkiintide Inhibitor Complex Length = 269

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 24/166 (14%)
Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
           Q+LE + + + +   HR+LK +N+LL         +L   DFG +      + +  S A 
Sbjct: 113 QILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKL--ADFGLA------IEVNDSEAW 164
Query: 408 IELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDY- 465
               G    ++PEV    P       YSK  D W  G + Y +     PF+   ++  Y 
Sbjct: 165 HGFAGTPGYLSPEVLKKDP-------YSKPVDIWACGVILYILLVGYPPFWDEDQHRLYA 217
Query: 466 EVNA------LPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATV 505
           ++ A       P+ +T  PE  + L+  +L  +P  R +A+ A  V
Sbjct: 218 QIKAGAYDYPSPEWDTVTPEA-KSLIDSMLTVNPKKRITADQALKV 262

>pdb|3UIU|A Chain A, Crystal Structure Of Apo-Pkr Kinase Domain Length = 306

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 106/266 (39%), Gaps = 45/266 (16%)
Query: 271 HPNVVVMHFAFT--DFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTD-LR 327
           H N+V  +  +   D+ P   D SL      P   +      +   LFI M+  +   L 
Sbjct: 64  HVNIVHYNGCWDGFDYDPETSDDSLESSDYDPEN-SKNSSRSKTKCLFIQMEFCDKGTLE 122
Query: 328 NYLRERCAQLSMHERVL---LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
            ++ +R  +    ++VL   LF Q+ +GV +++  +  HRDLK  NI L         Q+
Sbjct: 123 QWIEKRRGE--KLDKVLALELFEQITKGVDYIHSKKLIHRDLKPSNIFL-----VDTKQV 175
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAG 443
            I DFG         S++         G +  M+PE         S  +Y K  D +  G
Sbjct: 176 KIGDFGLV------TSLKNDGKRTRSKGTLRYMSPE-------QISSQDYGKEVDLYALG 222
Query: 444 TVAYEIFGH--DNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRP-SAE 500
            +  E+  H  D  F  S   TD     +  +     +  + L+ KLL   P DRP ++E
Sbjct: 223 LILAELL-HVCDTAFETSKFFTDLRDGIISDI---FDKKEKTLLQKLLSKKPEDRPNTSE 278
Query: 501 LAATVCQLYLWAPKHWLYGATPSHNE 526
           +  T   L +W         +P  NE
Sbjct: 279 ILRT---LTVWK-------KSPEKNE 294

>pdb|3LJ0|A Chain A, Ire1 Complexed With Adp And Quercetin Length = 434

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 77/174 (44%), Gaps = 18/174 (10%)
Query: 343 VLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQ--------LVITDFGSSYT 394
           + L  Q+  GV HL+  +  HRDLK  NIL+  S   T  Q        ++I+DFG    
Sbjct: 118 ISLLRQIASGVAHLHSLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKK 177
Query: 395 NKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGH- 452
             SG    +        G     APE+   +  L +    ++S D ++ G V Y I    
Sbjct: 178 LDSG-QXXFRXNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKG 236
Query: 453 DNPF---YQSARNTDYEVNALPQL----NTNVPEVMRRLVAKLLENDPSDRPSA 499
            +PF   Y    N    + +L ++    + ++      L+++++++DP  RP+A
Sbjct: 237 KHPFGDKYSRESNIIRGIFSLDEMKCLHDRSLIAEATDLISQMIDHDPLKRPTA 290

>pdb|4DN5|A Chain A, Crystal Structure Of Nf-kb-inducing Kinase (nik) Length = 356

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 73/173 (42%), Gaps = 19/173 (10%)
Query: 341 ERVLLF-TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYT-NKSG 398
           +R L +  Q LEG+ +L+  R  H D+K+DN+LL  S D +     + DFG +      G
Sbjct: 166 DRALYYLGQALEGLEYLHSRRILHGDVKADNVLL--SSDGS--HAALCDFGHAVCLQPDG 221
Query: 399 LSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQ 458
           L     + D  + G    MAPEV L           +K D W++  +   +    +P+ Q
Sbjct: 222 LGKDLLTGDY-IPGTETHMAPEVVLGR------SCDAKVDVWSSCCMMLHMLNGCHPWTQ 274
Query: 459 SARNT-DYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRP-----SAELAATV 505
             R     ++ + P     +P     L A+ ++      P     +AEL   V
Sbjct: 275 FFRGPLCLKIASEPPPVREIPPSCAPLTAQAIQEGLRKEPIHRVSAAELGGKV 327

>pdb|3SC1|A Chain A, Novel Isoquinolone Pdk1 Inhibitors Discovered Through Fragment-Based Lead Discovery Length = 311

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 88/235 (37%), Gaps = 50/235 (21%)
Query: 271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYL 330
           HP  V ++F F D      D  L +  +          Y +N  L   ++K  +      
Sbjct: 91  HPFFVKLYFTFQD------DEKLYFGLS----------YAKNGELLKYIRKIGS-----F 129
Query: 331 RERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG 390
            E C +    E       ++  + +L+     HRDLK +NILL     N    + ITDFG
Sbjct: 130 DETCTRFYTAE-------IVSALEYLHGKGIIHRDLKPENILL-----NEDMHIQITDFG 177
Query: 391 SSYTNKSGLSMQYSSADIE-LGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEI 449
           ++      LS +   A      G    ++PE+        S      SD W  G + Y++
Sbjct: 178 TAKV----LSPESKQARANXFVGTAQYVSPELLTEKSACKS------SDLWALGCIIYQL 227
Query: 450 FGHDNPFYQSARNTDYEVNALPQLNTNVPEVM----RRLVAKLLENDPSDRPSAE 500
                PF   A N       + +L  + PE      R LV KLL  D + R   E
Sbjct: 228 VAGLPPF--RAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGCE 280

>pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine Inhibitor 13 Length = 309

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 84/200 (42%), Gaps = 17/200 (8%)
Query: 315 LFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLD 374
           L +L    + DLRN++R      ++ + +    Q+ +G+ +L   +  HRDL + N +LD
Sbjct: 107 LVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKFVHRDLAARNCMLD 166
Query: 375 CSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY 434
             E  T   + + DFG +   +     +Y S   + G  +    P   +A   L +    
Sbjct: 167 --EKFT---VKVADFGLA---RDMYDKEYYSVHNKTGAKL----PVKWMALESLQTQKFT 214
Query: 435 SKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEV----MRRLVAKLLE 490
           +KSD W+ G + +E+     P Y      D  V  L       PE     +  ++ K   
Sbjct: 215 TKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWH 274
Query: 491 NDPSDRPS-AELAATVCQLY 509
                RPS +EL + +  ++
Sbjct: 275 PKAEMRPSFSELVSRISAIF 294

>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor Length = 319

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 84/200 (42%), Gaps = 17/200 (8%)
Query: 315 LFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLD 374
           L +L    + DLRN++R      ++ + +    Q+ +G+ +L   +  HRDL + N +LD
Sbjct: 127 LVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKFVHRDLAARNCMLD 186
Query: 375 CSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY 434
             E  T   + + DFG +   +     +Y S   + G  +    P   +A   L +    
Sbjct: 187 --EKFT---VKVADFGLA---RDMYDKEYYSVHNKTGAKL----PVKWMALESLQTQKFT 234
Query: 435 SKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEV----MRRLVAKLLE 490
           +KSD W+ G + +E+     P Y      D  V  L       PE     +  ++ K   
Sbjct: 235 TKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWH 294
Query: 491 NDPSDRPS-AELAATVCQLY 509
                RPS +EL + +  ++
Sbjct: 295 PKAEMRPSFSELVSRISAIF 314

>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With Compound 7 Length = 298

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 67/143 (46%), Gaps = 20/143 (13%)
Query: 311 RNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFT-QLLEGVTHLNMHRTAHRDLKSD 369
           RN+ L +    Y + LR YL++   ++  H ++L +T Q+ +G+ +L   R  HRDL + 
Sbjct: 89  RNLKLIMEFLPYGS-LREYLQKHKERID-HIKLLQYTSQICKGMEYLGTKRYIHRDLATR 146
Query: 370 NILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALM--APEVALATPG 427
           NIL++        ++ I DFG +      L        ++  G   +   APE    T  
Sbjct: 147 NILVENEN-----RVKIGDFGLTKV----LPQDKEXXKVKEPGESPIFWYAPES--LTES 195
Query: 428 LFSFVNYSKSDAWTAGTVAYEIF 450
            FS      SD W+ G V YE+F
Sbjct: 196 KFSVA----SDVWSFGVVLYELF 214

>pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor. Length = 310

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 84/200 (42%), Gaps = 17/200 (8%)
Query: 315 LFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLD 374
           L +L    + DLRN++R      ++ + +    Q+ +G+ +L   +  HRDL + N +LD
Sbjct: 108 LVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKFVHRDLAARNCMLD 167
Query: 375 CSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY 434
             E  T   + + DFG +   +     +Y S   + G  +    P   +A   L +    
Sbjct: 168 --EKFT---VKVADFGLA---RDMYDKEYYSVHNKTGAKL----PVKWMALESLQTQKFT 215
Query: 435 SKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEV----MRRLVAKLLE 490
           +KSD W+ G + +E+     P Y      D  V  L       PE     +  ++ K   
Sbjct: 216 TKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWH 275
Query: 491 NDPSDRPS-AELAATVCQLY 509
                RPS +EL + +  ++
Sbjct: 276 PKAEMRPSFSELVSRISAIF 295

>pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain Of C-Met Length = 306

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 84/200 (42%), Gaps = 17/200 (8%)
Query: 315 LFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLD 374
           L +L    + DLRN++R      ++ + +    Q+ +G+ +L   +  HRDL + N +LD
Sbjct: 105 LVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKFVHRDLAARNCMLD 164
Query: 375 CSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY 434
             E  T   + + DFG +   +     +Y S   + G  +    P   +A   L +    
Sbjct: 165 --EKFT---VKVADFGLA---RDMYDKEYYSVHNKTGAKL----PVKWMALESLQTQKFT 212
Query: 435 SKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEV----MRRLVAKLLE 490
           +KSD W+ G + +E+     P Y      D  V  L       PE     +  ++ K   
Sbjct: 213 TKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWH 272
Query: 491 NDPSDRPS-AELAATVCQLY 509
                RPS +EL + +  ++
Sbjct: 273 PKAEMRPSFSELVSRISAIF 292

>pdb|2XCK|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 88/235 (37%), Gaps = 50/235 (21%)
Query: 271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYL 330
           HP  V ++F F D      D  L +  +          Y +N  L   ++K  +      
Sbjct: 89  HPFFVKLYFTFQD------DEKLYFGLS----------YAKNGELLKYIRKIGS-----F 127
Query: 331 RERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG 390
            E C +    E       ++  + +L+     HRDLK +NILL     N    + ITDFG
Sbjct: 128 DETCTRFYTAE-------IVSALEYLHGKGIIHRDLKPENILL-----NEDMHIQITDFG 175
Query: 391 SSYTNKSGLSMQYSSADIE-LGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEI 449
           ++      LS +   A      G    ++PE+        S      SD W  G + Y++
Sbjct: 176 TAKV----LSPESKQARANXFVGTAQYVSPELLTEKSACKS------SDLWALGCIIYQL 225
Query: 450 FGHDNPFYQSARNTDYEVNALPQLNTNVPEVM----RRLVAKLLENDPSDRPSAE 500
                PF   A N       + +L  + PE      R LV KLL  D + R   E
Sbjct: 226 VAGLPPF--RAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGCE 278

>pdb|1KOB|A Chain A, Twitchin Kinase Fragment (Aplysia), Autoregulated Protein Kinase Domain Length = 387

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 70/169 (41%), Gaps = 25/169 (14%)
Query: 336 QLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTN 395
           ++S  E +    Q  EG+ H++ H   H D+K +NI+  C E      + I DFG +   
Sbjct: 145 KMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIM--C-ETKKASSVKIIDFGLATKL 201
Query: 396 KSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNP 455
                ++ ++A  E        APE+    P  F       +D W  G + Y +    +P
Sbjct: 202 NPDEIVKVTTATAEFA------APEIVDREPVGFY------TDMWAIGVLGYVLLSGLSP 249
Query: 456 F--------YQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDR 496
           F         Q+ +  D+E +     ++  PE  +  +  LL+ +P  R
Sbjct: 250 FAGEDDLETLQNVKRCDWEFDE-DAFSSVSPEA-KDFIKNLLQKEPRKR 296

>pdb|2R7B|A Chain A, Crystal Structure Of The Phosphoinositide-Dependent Kinase- 1 (Pdk-1)catalytic Domain Bound To A Dibenzonaphthyridine Inhibitor Length = 312

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 88/235 (37%), Gaps = 50/235 (21%)
Query: 271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYL 330
           HP  V ++F F D      D  L +  +          Y +N  L   ++K  +      
Sbjct: 92  HPFFVKLYFTFQD------DEKLYFGLS----------YAKNGELLKYIRKIGS-----F 130
Query: 331 RERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG 390
            E C +    E       ++  + +L+     HRDLK +NILL     N    + ITDFG
Sbjct: 131 DETCTRFYTAE-------IVSALEYLHGKGIIHRDLKPENILL-----NEDMHIQITDFG 178
Query: 391 SSYTNKSGLSMQYSSADI-ELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEI 449
           ++      LS +   A      G    ++PE+        S      SD W  G + Y++
Sbjct: 179 TAKV----LSPESKQARANSFVGTAQYVSPELLTEKSACKS------SDLWALGCIIYQL 228
Query: 450 FGHDNPFYQSARNTDYEVNALPQLNTNVPEVM----RRLVAKLLENDPSDRPSAE 500
                PF   A N       + +L  + PE      R LV KLL  D + R   E
Sbjct: 229 VAGLPPF--RAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGCE 281

>pdb|1UU3|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Ly333531 Length = 310

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 88/235 (37%), Gaps = 50/235 (21%)
Query: 271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYL 330
           HP  V ++F F D      D  L +  +          Y +N  L   ++K  +      
Sbjct: 89  HPFFVKLYFTFQD------DEKLYFGLS----------YAKNGELLKYIRKIGS-----F 127
Query: 331 RERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG 390
            E C +    E       ++  + +L+     HRDLK +NILL     N    + ITDFG
Sbjct: 128 DETCTRFYTAE-------IVSALEYLHGKGIIHRDLKPENILL-----NEDMHIQITDFG 175
Query: 391 SSYTNKSGLSMQYSSADIE-LGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEI 449
           ++      LS +   A      G    ++PE+        S      SD W  G + Y++
Sbjct: 176 TAKV----LSPESKQARANXFVGTAQYVSPELLTEKSACKS------SDLWALGCIIYQL 225
Query: 450 FGHDNPFYQSARNTDYEVNALPQLNTNVPEVM----RRLVAKLLENDPSDRPSAE 500
                PF   A N       + +L  + PE      R LV KLL  D + R   E
Sbjct: 226 VAGLPPF--RAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGCE 278

>pdb|4A07|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric Activator Ps171 Bound To The Pif-Pocket Length = 311

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 88/235 (37%), Gaps = 50/235 (21%)
Query: 271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYL 330
           HP  V ++F F D      D  L +  +          Y +N  L   ++K  +      
Sbjct: 91  HPFFVKLYFTFQD------DEKLYFGLS----------YAKNGELLKYIRKIGS-----F 129
Query: 331 RERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG 390
            E C +    E       ++  + +L+     HRDLK +NILL     N    + ITDFG
Sbjct: 130 DETCTRFYTAE-------IVSALEYLHGKGIIHRDLKPENILL-----NEDMHIQITDFG 177
Query: 391 SSYTNKSGLSMQYSSADIE-LGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEI 449
           ++      LS +   A      G    ++PE+        S      SD W  G + Y++
Sbjct: 178 TAKV----LSPESKQARANXFVGTAQYVSPELLTEKSAXKS------SDLWALGCIIYQL 227
Query: 450 FGHDNPFYQSARNTDYEVNALPQLNTNVPEVM----RRLVAKLLENDPSDRPSAE 500
                PF   A N       + +L  + PE      R LV KLL  D + R   E
Sbjct: 228 VAGLPPF--RAGNEGLIFAKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGCE 280

>pdb|3RWP|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3- Phosphoinositide Dependent Kinase (Pdk1) Length = 311

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 88/235 (37%), Gaps = 50/235 (21%)
Query: 271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYL 330
           HP  V ++F F D      D  L +  +          Y +N  L   ++K  +      
Sbjct: 91  HPFFVKLYFTFQD------DEKLYFGLS----------YAKNGELLKYIRKIGS-----F 129
Query: 331 RERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG 390
            E C +    E       ++  + +L+     HRDLK +NILL     N    + ITDFG
Sbjct: 130 DETCTRFYTAE-------IVSALEYLHGKGIIHRDLKPENILL-----NEDMHIQITDFG 177
Query: 391 SSYTNKSGLSMQYSSADIE-LGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEI 449
           ++      LS +   A      G    ++PE+        S      SD W  G + Y++
Sbjct: 178 TAKV----LSPESKQARANXFVGTAQYVSPELLTEKSACKS------SDLWALGCIIYQL 227
Query: 450 FGHDNPFYQSARNTDYEVNALPQLNTNVPEVM----RRLVAKLLENDPSDRPSAE 500
                PF   A N       + +L  + PE      R LV KLL  D + R   E
Sbjct: 228 VAGLPPF--RAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGCE 280

>pdb|3H9O|A Chain A, Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1) In Complex With Compound 9 Length = 311

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 88/235 (37%), Gaps = 50/235 (21%)
Query: 271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYL 330
           HP  V ++F F D      D  L +  +          Y +N  L   ++K  +      
Sbjct: 91  HPFFVKLYFTFQD------DEKLYFGLS----------YAKNGELLKYIRKIGS-----F 129
Query: 331 RERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG 390
            E C +    E       ++  + +L+     HRDLK +NILL     N    + ITDFG
Sbjct: 130 DETCTRFYTAE-------IVSALEYLHGKGIIHRDLKPENILL-----NEDMHIQITDFG 177
Query: 391 SSYTNKSGLSMQYSSADIE-LGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEI 449
           ++      LS +   A      G    ++PE+        S      SD W  G + Y++
Sbjct: 178 TAKV----LSPESKQARANXFVGTAQYVSPELLTEKSACKS------SDLWALGCIIYQL 227
Query: 450 FGHDNPFYQSARNTDYEVNALPQLNTNVPEVM----RRLVAKLLENDPSDRPSAE 500
                PF   A N       + +L  + PE      R LV KLL  D + R   E
Sbjct: 228 VAGLPPF--RAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGCE 280

>pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor Length = 298

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 84/200 (42%), Gaps = 17/200 (8%)
Query: 315 LFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLD 374
           L +L    + DLRN++R      ++ + +    Q+ +G+ +L   +  HRDL + N +LD
Sbjct: 103 LVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKFVHRDLAARNCMLD 162
Query: 375 CSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY 434
             E  T   + + DFG +   +     +Y S   + G  +    P   +A   L +    
Sbjct: 163 --EKFT---VKVADFGLA---RDMYDKEYYSVHNKTGAKL----PVKWMALESLQTQKFT 210
Query: 435 SKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEV----MRRLVAKLLE 490
           +KSD W+ G + +E+     P Y      D  V  L       PE     +  ++ K   
Sbjct: 211 TKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWH 270
Query: 491 NDPSDRPS-AELAATVCQLY 509
                RPS +EL + +  ++
Sbjct: 271 PKAEMRPSFSELVSRISAIF 290

>pdb|3BHH|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase Iib Isoform 1 (camk2b) Length = 295

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 70/172 (40%), Gaps = 28/172 (16%)
Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
           Q+LE V H +     HRDLK +N+LL         +L   DFG +   +      +  A 
Sbjct: 111 QILEAVLHCHQMGVVHRDLKPENLLLASKCKGAAVKL--ADFGLAIEVQGDQQAWFGFA- 167
Query: 408 IELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPF--------YQ 458
               G    ++PEV            Y K  D W  G + Y +     PF        YQ
Sbjct: 168 ----GTPGYLSPEVLRKEA-------YGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQ 216
Query: 459 SARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAAT---VCQ 507
             +   Y+  + P+ +T  PE  + L+ ++L  +P+ R +A  A     VCQ
Sbjct: 217 QIKAGAYDFPS-PEWDTVTPEA-KNLINQMLTINPAKRITAHEALKHPWVCQ 266

>pdb|2PVY|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K659n Mutation Responsible For An Unclassified Craniosynostosis Syndrome. Length = 324

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 72/164 (43%), Gaps = 30/164 (18%)
Query: 303 LNPTGGYGRNMSLFILMK-KYNTDLRNYLRER---------------CAQLSMHERVLLF 346
           +N  G   ++  L+++++     +LR YLR R                 Q++  + V   
Sbjct: 104 INLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCT 163
Query: 347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSA 406
            QL  G+ +L   +  HRDL + N+L+  +E+N    + I DFG +   +   ++ Y   
Sbjct: 164 YQLARGMEYLASQKCIHRDLAARNVLV--TENNV---MKIADFGLA---RDINNIDYYKN 215
Query: 407 DIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIF 450
                  V  MAPE       LF  V   +SD W+ G + +EIF
Sbjct: 216 TTNGRLPVKWMAPE------ALFDRVYTHQSDVWSFGVLMWEIF 253

>pdb|1FGK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of Fibroblast Growth Factor Receptor 1 Length = 310

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 14/115 (12%)
Query: 336 QLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTN 395
           QLS  + V    Q+  G+ +L   +  HRDL + N+L+  +EDN    + I DFG +   
Sbjct: 139 QLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLV--TEDNV---MKIADFGLA--- 190
Query: 396 KSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIF 450
           +    + Y          V  MAPE       LF  +   +SD W+ G + +EIF
Sbjct: 191 RDIHHIDYYKKTTNGRLPVKWMAPE------ALFDRIYTHQSDVWSFGVLLWEIF 239

>pdb|3RHX|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase In Complex With Arq 069 Length = 306

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 14/115 (12%)
Query: 336 QLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTN 395
           QLS  + V    Q+  G+ +L   +  HRDL + N+L+  +EDN    + I DFG +   
Sbjct: 135 QLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLV--TEDNV---MKIADFGLA--- 186
Query: 396 KSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIF 450
           +    + Y          V  MAPE       LF  +   +SD W+ G + +EIF
Sbjct: 187 RDIHHIDYYKKTTNGRLPVKWMAPE------ALFDRIYTHQSDVWSFGVLLWEIF 235

>pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880 (Gsk1 Length = 302

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 84/200 (42%), Gaps = 17/200 (8%)
Query: 315 LFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLD 374
           L +L    + DLRN++R      ++ + +    Q+ +G+ +L   +  HRDL + N +LD
Sbjct: 106 LVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKFVHRDLAARNCMLD 165
Query: 375 CSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY 434
             E  T   + + DFG +   +     +Y S   + G  +    P   +A   L +    
Sbjct: 166 --EKFT---VKVADFGLA---RDMYDKEYYSVHNKTGAKL----PVKWMALESLQTQKFT 213
Query: 435 SKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEV----MRRLVAKLLE 490
           +KSD W+ G + +E+     P Y      D  V  L       PE     +  ++ K   
Sbjct: 214 TKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWH 273
Query: 491 NDPSDRPS-AELAATVCQLY 509
                RPS +EL + +  ++
Sbjct: 274 PKAEMRPSFSELVSRISAIF 293

>pdb|4F63|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor Receptor 1 Kinase Domain In Complex With Compound 1 Length = 309

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 14/115 (12%)
Query: 336 QLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTN 395
           QLS  + V    Q+  G+ +L   +  HRDL + N+L+  +EDN    + I DFG +   
Sbjct: 138 QLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLV--TEDNV---MKIADFGLA--- 189
Query: 396 KSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIF 450
           +    + Y          V  MAPE       LF  +   +SD W+ G + +EIF
Sbjct: 190 RDIHHIDYYKKTTNGRLPVKWMAPE------ALFDRIYTHQSDVWSFGVLLWEIF 238

>pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The Dually-Phosphorylated, Activated State Length = 308

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 84/200 (42%), Gaps = 17/200 (8%)
Query: 315 LFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLD 374
           L +L    + DLRN++R      ++ + +    Q+ +G+ +L   +  HRDL + N +LD
Sbjct: 108 LVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKFVHRDLAARNCMLD 167
Query: 375 CSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY 434
             E  T   + + DFG +   +     +Y S   + G  +    P   +A   L +    
Sbjct: 168 --EKFT---VKVADFGLA---RDMYDKEYYSVHNKTGAKL----PVKWMALESLQTQKFT 215
Query: 435 SKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEV----MRRLVAKLLE 490
           +KSD W+ G + +E+     P Y      D  V  L       PE     +  ++ K   
Sbjct: 216 TKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWH 275
Query: 491 NDPSDRPS-AELAATVCQLY 509
                RPS +EL + +  ++
Sbjct: 276 PKAEMRPSFSELVSRISAIF 295

>pdb|3IOP|A Chain A, Pdk-1 In Complex With The Inhibitor Compound-8i Length = 312

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 88/235 (37%), Gaps = 50/235 (21%)
Query: 271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYL 330
           HP  V ++F F D      D  L +  +          Y +N  L   ++K  +      
Sbjct: 92  HPFFVKLYFTFQD------DEKLYFGLS----------YAKNGELLKYIRKIGS-----F 130
Query: 331 RERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG 390
            E C +    E       ++  + +L+     HRDLK +NILL     N    + ITDFG
Sbjct: 131 DETCTRFYTAE-------IVSALEYLHGKGIIHRDLKPENILL-----NEDMHIQITDFG 178
Query: 391 SSYTNKSGLSMQYSSADIE-LGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEI 449
           ++      LS +   A      G    ++PE+        S      SD W  G + Y++
Sbjct: 179 TAKV----LSPESKQARANXFVGTAQYVSPELLTEKSACKS------SDLWALGCIIYQL 228
Query: 450 FGHDNPFYQSARNTDYEVNALPQLNTNVPEVM----RRLVAKLLENDPSDRPSAE 500
                PF   A N       + +L  + PE      R LV KLL  D + R   E
Sbjct: 229 VAGLPPF--RAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGCE 281

>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With Vuf 12058 Length = 285

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 76/181 (41%), Gaps = 21/181 (11%)
Query: 323 NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 382
           N  L  +LR+   + ++ + V +   +  G+ +L+     HRDL + NIL+     N+  
Sbjct: 93  NGSLDAFLRKNDGRFTVIQLVGMLRGIGSGMKYLSDMSYVHRDLAARNILV-----NSNL 147
Query: 383 QLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY-SKSDAWT 441
              ++DFG S   +      Y++     GG +      +    P   ++  + S SD W+
Sbjct: 148 VCKVSDFGMSRVLEDDPEAAYTTR----GGKIP-----IRWTAPEAIAYRKFTSASDVWS 198
Query: 442 AGTVAYEIFGHDNPFYQSARNTDY-----EVNALPQLNTNVPEVMRRLVAKLLENDPSDR 496
            G V +E+  +    Y    N D      E   LP    + P  + +L+    + + SDR
Sbjct: 199 YGIVMWEVMSYGERPYWDMSNQDVIKAIEEGYRLPP-PMDCPIALHQLMLDCWQKERSDR 257
Query: 497 P 497
           P
Sbjct: 258 P 258

>pdb|3JS2|A Chain A, Crystal Structure Of Minimal Kinase Domain Of Fibroblast Growth Factor Receptor 1 In Complex With 5-(2-Thienyl) Nicotinic Acid Length = 317

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 14/115 (12%)
Query: 336 QLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTN 395
           QLS  + V    Q+  G+ +L   +  HRDL + N+L+  +EDN    + I DFG +   
Sbjct: 146 QLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLV--TEDNV---MKIADFGLA--- 197
Query: 396 KSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIF 450
           +    + Y          V  MAPE       LF  +   +SD W+ G + +EIF
Sbjct: 198 RDIHHIDYYKKTTNGRLPVKWMAPE------ALFDRIYTHQSDVWSFGVLLWEIF 246

>pdb|2Q0B|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic E565a Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 29/141 (20%)
Query: 325 DLRNYLRER---------------CAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSD 369
           +LR YLR R                 Q++  + V    QL  G+ +L   +  HRDL + 
Sbjct: 127 NLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAAR 186
Query: 370 NILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF 429
           N+L+  +E+N    + I DFG +   +   ++ Y          V  MAPE       LF
Sbjct: 187 NVLV--TENNV---MKIADFGLA---RDINNIDYYKKTTNGRLPVKWMAPE------ALF 232
Query: 430 SFVNYSKSDAWTAGTVAYEIF 450
             V   +SD W+ G + +EIF
Sbjct: 233 DRVYTHQSDVWSFGVLMWEIF 253

>pdb|2PZ5|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic N549t Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 29/141 (20%)
Query: 325 DLRNYLRER---------------CAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSD 369
           +LR YLR R                 Q++  + V    QL  G+ +L   +  HRDL + 
Sbjct: 127 NLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAAR 186
Query: 370 NILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF 429
           N+L+  +E+N    + I DFG +   +   ++ Y          V  MAPE       LF
Sbjct: 187 NVLV--TENNV---MKIADFGLA---RDINNIDYYKKTTNGRLPVKWMAPE------ALF 232
Query: 430 SFVNYSKSDAWTAGTVAYEIF 450
             V   +SD W+ G + +EIF
Sbjct: 233 DRVYTHQSDVWSFGVLMWEIF 253

>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Covalent Inhibitor Length = 286

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 79/203 (38%), Gaps = 48/203 (23%)
Query: 313 MSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNIL 372
           MS   L+     ++  YLR       + + V +  Q+  G+ ++      HRDL++ NIL
Sbjct: 94  MSKGCLLDFLKGEMGKYLR-------LPQLVDMAAQIASGMAYVERMNYVHRDLRAANIL 146
Query: 373 LDCSEDNTCPQLVITDFG-------SSYTNKSGLSMQYSSADIELGGNVALMAPEVALAT 425
           +   E+  C    + DFG       + YT + G               +   APE AL  
Sbjct: 147 V--GENLVCK---VADFGLARLIEDNEYTARQGAKF-----------PIKWTAPEAALY- 189
Query: 426 PGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD--------YEVNALPQLNTNV 477
            G F+     KSD W+ G +  E+       Y    N +        Y +   P+     
Sbjct: 190 -GRFTI----KSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPE----C 240
Query: 478 PEVMRRLVAKLLENDPSDRPSAE 500
           PE +  L+ +    DP +RP+ E
Sbjct: 241 PESLHDLMCQCWRKDPEERPTFE 263

>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With Irreversible Inhibitor Length = 286

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 79/203 (38%), Gaps = 48/203 (23%)
Query: 313 MSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNIL 372
           MS   L+     ++  YLR       + + V +  Q+  G+ ++      HRDL++ NIL
Sbjct: 94  MSKGCLLDFLKGEMGKYLR-------LPQLVDMAAQIASGMAYVERMNYVHRDLRAANIL 146
Query: 373 LDCSEDNTCPQLVITDFG-------SSYTNKSGLSMQYSSADIELGGNVALMAPEVALAT 425
           +   E+  C    + DFG       + YT + G               +   APE AL  
Sbjct: 147 V--GENLVCK---VADFGLARLIEDNEYTARQGAKF-----------PIKWTAPEAALY- 189
Query: 426 PGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD--------YEVNALPQLNTNV 477
            G F+     KSD W+ G +  E+       Y    N +        Y +   P+     
Sbjct: 190 -GRFTI----KSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPE----C 240
Query: 478 PEVMRRLVAKLLENDPSDRPSAE 500
           PE +  L+ +    DP +RP+ E
Sbjct: 241 PESLHDLMCQCWRKDPEERPTFE 263

>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus SerineTHREONINE KINASE Pknb Length = 294

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 78/178 (43%), Gaps = 23/178 (12%)
Query: 326 LRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLV 385
           L  Y+ E    LS+   +    Q+L+G+ H +  R  HRD+K  NIL+D ++      L 
Sbjct: 98  LSEYI-ESHGPLSVDTAINFTNQILDGIKHAHDMRIVHRDIKPQNILIDSNK-----TLK 151
Query: 386 ITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTV 445
           I DFG +      LS    +    + G V   +PE A              +D ++ G V
Sbjct: 152 IFDFGIA----KALSETSLTQTNHVLGTVQYFSPEQAKGE------ATDECTDIYSIGIV 201
Query: 446 AYEIFGHDNPFYQSARNT---DYEVNALPQLNTNV----PEVMRRLVAKLLENDPSDR 496
            YE+   + PF      +    +  +++P + T+V    P+ +  ++ +  E D ++R
Sbjct: 202 LYEMLVGEPPFNGETAVSIAIKHIQDSVPNVTTDVRKDIPQSLSNVILRATEKDKANR 259

>pdb|4AW2|A Chain A, Crystal Structure Of Cdc42 Binding Protein Kinase Alpha (Mrck Alpha) Length = 437

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 76/184 (41%), Gaps = 18/184 (9%)
Query: 314 SLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNIL 372
           +L+++M  Y   DL   L +   +L          +++  +  ++     HRD+K DNIL
Sbjct: 148 NLYLVMDYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVIAIDSVHQLHYVHRDIKPDNIL 207
Query: 373 LDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV 432
           +D +       + + DFGS        ++Q S A     G    ++PE+  A  G     
Sbjct: 208 MDMN-----GHIRLADFGSCLKLMEDGTVQSSVA----VGTPDYISPEILQAMEGGKGRY 258
Query: 433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY-------EVNALPQLNTNVPEVMRRLV 485
              + D W+ G   YE+   + PFY  +    Y       E    P   T+V E  + L+
Sbjct: 259 G-PECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHKERFQFPTQVTDVSENAKDLI 317
Query: 486 AKLL 489
            +L+
Sbjct: 318 RRLI 321

>pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1 Length = 317

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 84/200 (42%), Gaps = 17/200 (8%)
Query: 315 LFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLD 374
           L +L    + DLRN++R      ++ + +    Q+ +G+  L   +  HRDL + N +LD
Sbjct: 109 LVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLD 168
Query: 375 CSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY 434
             E  T   + + DFG +   +  L  ++ S   + G  +    P   +A   L +    
Sbjct: 169 --EKFT---VKVADFGLA---RDMLDKEFDSVHNKTGAKL----PVKWMALESLQTQKFT 216
Query: 435 SKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEV----MRRLVAKLLE 490
           +KSD W+ G + +E+     P Y      D  V  L       PE     +  ++ K   
Sbjct: 217 TKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWH 276
Query: 491 NDPSDRPS-AELAATVCQLY 509
                RPS +EL + +  ++
Sbjct: 277 PKAEMRPSFSELVSRISAIF 296

>pdb|3KXX|A Chain A, Structure Of The Mutant Fibroblast Growth Factor Receptor 1 Length = 317

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 14/115 (12%)
Query: 336 QLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTN 395
           QLS  + V    Q+  G+ +L   +  HRDL + N+L+  +EDN    + I DFG +   
Sbjct: 146 QLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLV--TEDNV---MKIADFGLA--- 197
Query: 396 KSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIF 450
           +    + Y          V  MAPE       LF  +   +SD W+ G + +EIF
Sbjct: 198 RDIHHIDYYKKTTNGRLPVKWMAPE------ALFDRIYTHQSDVWSFGVLLWEIF 246

>pdb|3KK8|A Chain A, Camkii Substrate Complex A Length = 284

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 24/166 (14%)
Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
           Q+LE + + + +   HR+LK +N+LL         +L   DFG +      + +  S A 
Sbjct: 113 QILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKL--ADFGLA------IEVNDSEAW 164
Query: 408 IELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDY- 465
               G    ++PEV    P       YSK  D W  G + Y +     PF+   ++  Y 
Sbjct: 165 HGFAGTPGYLSPEVLKKDP-------YSKPVDIWACGVILYILLVGYPPFWDEDQHRLYA 217
Query: 466 EVNA------LPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATV 505
           ++ A       P+ +T  PE  + L+  +L  +P  R +A+ A  V
Sbjct: 218 QIKAGAYDYPSPEWDTVTPEA-KSLIDSMLTVNPKKRITADQALKV 262

>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase Length = 318

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 84/200 (42%), Gaps = 17/200 (8%)
Query: 315 LFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLD 374
           L +L    + DLRN++R      ++ + +    Q+ +G+ +L   +  HRDL + N +LD
Sbjct: 126 LVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKFVHRDLAARNCMLD 185
Query: 375 CSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY 434
             E  T   + + DFG +   +     +Y S   + G  +    P   +A   L +    
Sbjct: 186 --EKFT---VKVADFGLA---RDMYDKEYYSVHNKTGAKL----PVKWMALESLQTQKFT 233
Query: 435 SKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEV----MRRLVAKLLE 490
           +KSD W+ G + +E+     P Y      D  V  L       PE     +  ++ K   
Sbjct: 234 TKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWH 293
Query: 491 NDPSDRPS-AELAATVCQLY 509
                RPS +EL + +  ++
Sbjct: 294 PKAEMRPSFSELVSRISAIF 313

>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain Length = 291

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 76/181 (41%), Gaps = 21/181 (11%)
Query: 323 NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 382
           N  L  +LR+   + ++ + V +   +  G+ +L+     HRDL + NIL+     N+  
Sbjct: 99  NGSLDAFLRKNDGRFTVIQLVGMLRGIGSGMKYLSDMSYVHRDLAARNILV-----NSNL 153
Query: 383 QLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY-SKSDAWT 441
              ++DFG S   +      Y++     GG +      +    P   ++  + S SD W+
Sbjct: 154 VCKVSDFGMSRVLEDDPEAAYTTR----GGKIP-----IRWTAPEAIAYRKFTSASDVWS 204
Query: 442 AGTVAYEIFGHDNPFYQSARNTDY-----EVNALPQLNTNVPEVMRRLVAKLLENDPSDR 496
            G V +E+  +    Y    N D      E   LP    + P  + +L+    + + SDR
Sbjct: 205 YGIVMWEVMSYGERPYWDMSNQDVIKAIEEGYRLPP-PMDCPIALHQLMLDCWQKERSDR 263
Query: 497 P 497
           P
Sbjct: 264 P 264

>pdb|2PY3|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic E565g Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 29/141 (20%)
Query: 325 DLRNYLRER---------------CAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSD 369
           +LR YLR R                 Q++  + V    QL  G+ +L   +  HRDL + 
Sbjct: 127 NLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAAR 186
Query: 370 NILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF 429
           N+L+  +E+N    + I DFG +   +   ++ Y          V  MAPE       LF
Sbjct: 187 NVLV--TENNV---MKIADFGLA---RDINNIDYYKKTTNGRLPVKWMAPE------ALF 232
Query: 430 SFVNYSKSDAWTAGTVAYEIF 450
             V   +SD W+ G + +EIF
Sbjct: 233 DRVYTHQSDVWSFGVLMWEIF 253

>pdb|3TT0|A Chain A, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase Domain With 3-(2,6-Dichloro-3, 5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1- Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398) Length = 382

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 14/115 (12%)
Query: 336 QLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTN 395
           QLS  + V    Q+  G+ +L   +  HRDL + N+L+  +EDN    + I DFG +   
Sbjct: 187 QLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLV--TEDNV---MKIADFGLA--- 238
Query: 396 KSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIF 450
           +    + Y          V  MAPE       LF  +   +SD W+ G + +EIF
Sbjct: 239 RDIHHIDYYKKTTNGRLPVKWMAPE------ALFDRIYTHQSDVWSFGVLLWEIF 287

>pdb|3KK9|A Chain A, Camkii Substrate Complex B Length = 282

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 24/166 (14%)
Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
           Q+LE + + + +   HR+LK +N+LL         +L   DFG +      + +  S A 
Sbjct: 112 QILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKL--ADFGLA------IEVNDSEAW 163
Query: 408 IELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDY- 465
               G    ++PEV    P       YSK  D W  G + Y +     PF+   ++  Y 
Sbjct: 164 HGFAGTPGYLSPEVLKKDP-------YSKPVDIWACGVILYILLVGYPPFWDEDQHRLYA 216
Query: 466 EVNA------LPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATV 505
           ++ A       P+ +T  PE  + L+  +L  +P  R +A+ A  V
Sbjct: 217 QIKAGAYDYPSPEWDTVTPEA-KSLIDSMLTVNPKKRITADQALKV 261

>pdb|2PWL|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic N549h Mutation Responsible For Crouzon Syndrome. Length = 324

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 29/141 (20%)
Query: 325 DLRNYLRER---------------CAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSD 369
           +LR YLR R                 Q++  + V    QL  G+ +L   +  HRDL + 
Sbjct: 127 NLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAAR 186
Query: 370 NILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF 429
           N+L+  +E+N    + I DFG +   +   ++ Y          V  MAPE       LF
Sbjct: 187 NVLV--TENNV---MKIADFGLA---RDINNIDYYKKTTNGRLPVKWMAPE------ALF 232
Query: 430 SFVNYSKSDAWTAGTVAYEIF 450
             V   +SD W+ G + +EIF
Sbjct: 233 DRVYTHQSDVWSFGVLMWEIF 253

>pdb|1ZYC|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild- Type In Apo Form. Length = 303

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 22/219 (10%)
Query: 295 YPSALPAR--LNPTGGYGRNMSLFILMKK-YNTDLRNYLRERCAQLSMHERVLLFTQLLE 351
           Y + L  R  + P     +  +LFI M+   N  L + +          E   LF Q+LE
Sbjct: 68  YAAWLERRNFVKPMTAVKKKSTLFIQMEYCENRTLYDLIHSENLNQQRDEYWRLFRQILE 127
Query: 352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG-SSYTNKSGLSMQYSSADIEL 410
            +++++     HRDLK  NI +D S +     + I DFG +   ++S   ++  S ++  
Sbjct: 128 ALSYIHSQGIIHRDLKPMNIFIDESRN-----VKIGDFGLAKNVHRSLDILKLDSQNLPG 182
Query: 411 GGN--VALMAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTD--- 464
             +   + +   + +AT  L    +Y+ K D ++ G + +E+     PF       +   
Sbjct: 183 SSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMI---YPFSTGMERVNILK 239
Query: 465 ----YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSA 499
                 +   P  + N  +V ++++  L+++DP+ RP A
Sbjct: 240 KLRSVSIEFPPDFDDNKMKVEKKIIRLLIDHDPNKRPGA 278

>pdb|3FHR|A Chain A, High Resolution Crystal Structure Of Mitogen-Activated Protein Kinase-Activated Protein Kinase 3 (Mk3)-Inhibitor Complex Length = 336

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 82/201 (40%), Gaps = 30/201 (14%)
Query: 309 YGRNMSLFILMKKYNTDLRNYLRERCAQ-LSMHERVLLFTQLLEGVTHLNMHRTAHRDLK 367
           +G+   L I+      +L + ++ER  Q  +  E   +   +   +  L+ H  AHRD+K
Sbjct: 96  HGKRCLLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSHNIAHRDVK 155
Query: 368 SDNILLDCSEDNTCPQLVITDFG-SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP 426
            +N+L    E +    L +TDFG +  T ++ L     +           +APEV     
Sbjct: 156 PENLLYTSKEKDAV--LKLTDFGFAKETTQNALQTPCYTP--------YYVAPEV----- 200
Query: 427 GLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSA---------RNTDYEVNALPQLN-T 475
                  Y KS D W+ G + Y +     PFY +          R         P    +
Sbjct: 201 --LGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPGMKRRIRLGQYGFPNPEWS 258
Query: 476 NVPEVMRRLVAKLLENDPSDR 496
            V E  ++L+  LL+ DP++R
Sbjct: 259 EVSEDAKQLIRLLLKTDPTER 279

>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg- 1009247 Length = 270

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 70/175 (40%), Gaps = 43/175 (24%)
Query: 347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG-------SSYTNKSGL 399
            Q+ EG+  +      HRDL++ NIL+  S    C    I DFG       + YT + G 
Sbjct: 118 AQIAEGMAFIEQRNYIHRDLRAANILVSAS--LVCK---IADFGLARVIEDNEYTAREGA 172
Query: 400 SMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIF-------- 450
                         +   APE         +F +++ KSD W+ G +  EI         
Sbjct: 173 KFP-----------IKWTAPEA-------INFGSFTIKSDVWSFGILLMEIVTYGRIPYP 214
Query: 451 GHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATV 505
           G  NP    A    Y    +P+   N PE +  ++ +  +N P +RP+ E   +V
Sbjct: 215 GMSNPEVIRALERGYR---MPR-PENCPEELYNIMMRCWKNRPEERPTFEYIQSV 265

>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor Mc4b Length = 275

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 71/179 (39%), Gaps = 41/179 (22%)
Query: 337 LSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG------ 390
           L + + V +  Q+  G+ ++      HRDL++ NIL+   E+  C    + DFG      
Sbjct: 100 LRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILV--GENLVCK---VADFGLARLIE 154
Query: 391 -SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEI 449
            + YT + G               +   APE AL   G F+     KSD W+ G +  E+
Sbjct: 155 DNEYTARQGAKF-----------PIKWTAPEAALY--GRFTI----KSDVWSFGILLTEL 197
Query: 450 FGHDNPFYQSARNTD--------YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
                  Y    N +        Y +   P+     PE +  L+ +    DP +RP+ E
Sbjct: 198 TTKGRVPYPGMVNREVLDQVERGYRMPCPPE----CPESLHDLMCQCWRKDPEERPTFE 252

>pdb|3IW4|A Chain A, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071 Length = 360

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 76/190 (40%), Gaps = 20/190 (10%)
Query: 315 LFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLD 374
           L+ +M+  N     Y  ++  +    + V    ++  G+  L+     +RDLK DN++LD
Sbjct: 95  LYFVMEYVNGGDLMYHIQQVGKFKEPQAVFYAAEISIGLFFLHKRGIIYRDLKLDNVMLD 154
Query: 375 CSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY 434
            SE +    + I DFG    +     M       E  G    +APE+    P       Y
Sbjct: 155 -SEGH----IKIADFGMCKEH-----MMDGVTTREFCGTPDYIAPEIIAYQP-------Y 197
Query: 435 SKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDP 493
            KS D W  G + YE+     PF     + D    ++ + N + P+ + +    + +   
Sbjct: 198 GKSVDWWAYGVLLYEMLAGQPPF--DGEDEDELFQSIMEHNVSYPKSLSKEAVSICKGLM 255
Query: 494 SDRPSAELAA 503
           +  P+  L  
Sbjct: 256 TKHPAKRLGC 265

>pdb|4EJN|A Chain A, Crystal Structure Of Autoinhibited Form Of Akt1 In Complex With N-(4- (5-(3-Acetamidophenyl)-2-(2-Aminopyridin-3-Yl)-3h- Imidazo[4,5- B]pyridin-3-Yl)benzyl)-3-Fluorobenzamide Length = 446

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 69/161 (42%), Gaps = 26/161 (16%)
Query: 363 HRDLKSDNILLDCSEDNTCPQLVITDFGSSYTN-KSGLSMQYSSADIELGGNVALMAPEV 421
           +RDLK +N++LD         + ITDFG      K G +M+         G    +APEV
Sbjct: 272 YRDLKLENLMLDKD-----GHIKITDFGLCKEGIKDGATMK------TFCGTPEYLAPEV 320
Query: 422 ALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQL---NTNV 477
                      +Y ++ D W  G V YE+     PFY       +E+  + ++    T  
Sbjct: 321 LEDN-------DYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRFPRTLG 373
Query: 478 PEVMRRLVAKLLENDPSDR--PSAELAATVCQLYLWAPKHW 516
           PE  + L++ LL+ DP  R    +E A  + Q   +A   W
Sbjct: 374 PEA-KSLLSGLLKKDPKQRLGGGSEDAKEIMQHRFFAGIVW 413

>pdb|1ZY4|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g Hyperactivating Mutant In Apo Form. Length = 303

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 22/219 (10%)
Query: 295 YPSALPAR--LNPTGGYGRNMSLFILMKK-YNTDLRNYLRERCAQLSMHERVLLFTQLLE 351
           Y + L  R  + P     +  +LFI M+   N  L + +          E   LF Q+LE
Sbjct: 68  YAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWRLFRQILE 127
Query: 352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG-SSYTNKSGLSMQYSSADIEL 410
            +++++     HRDLK  NI +D S +     + I DFG +   ++S   ++  S ++  
Sbjct: 128 ALSYIHSQGIIHRDLKPMNIFIDESRN-----VKIGDFGLAKNVHRSLDILKLDSQNLPG 182
Query: 411 GGN--VALMAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTD--- 464
             +   + +   + +AT  L    +Y+ K D ++ G + +E+     PF       +   
Sbjct: 183 SSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMI---YPFSTGMERVNILK 239
Query: 465 ----YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSA 499
                 +   P  + N  +V ++++  L+++DP+ RP A
Sbjct: 240 KLRSVSIEFPPDFDDNKMKVEKKIIRLLIDHDPNKRPGA 278

>pdb|3PWY|A Chain A, Crystal Structure Of An Extender (Spd28345)-Modified Human Pdk1 Complex 2 Length = 311

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 91/236 (38%), Gaps = 52/236 (22%)
Query: 271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYL 330
           HP  V ++F F D      D  L +  +          Y +N  L   ++K  +      
Sbjct: 91  HPFFVKLYFTFQD------DEKLYFGLS----------YAKNGCLLKYIRKIGS-----F 129
Query: 331 RERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG 390
            E C +    E       ++  + +L+     HRDLK +NILL     N    + ITDFG
Sbjct: 130 DETCTRFYTAE-------IVSALEYLHGKGIIHRDLKPENILL-----NEDMHIQITDFG 177
Query: 391 SSYTNKSGLSMQYSSADI-ELGGNVALMAPEVALATPGLFSFVNYSK-SDAWTAGTVAYE 448
           ++      LS +   A      G    ++PE       L +  + SK SD W  G + Y+
Sbjct: 178 TAKV----LSPESKQARANSFVGTAQYVSPE-------LLTEKSASKSSDLWALGCIIYQ 226
Query: 449 IFGHDNPFYQSARNTDYEVNALPQLNTNVPEVM----RRLVAKLLENDPSDRPSAE 500
           +     PF   A N       + +L  + PE      R LV KLL  D + R   E
Sbjct: 227 LVAGLPPF--RAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGCE 280

>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 277

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 71/179 (39%), Gaps = 41/179 (22%)
Query: 337 LSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG------ 390
           L + + V +  Q+  G+ ++      HRDL++ NIL+   E+  C    + DFG      
Sbjct: 102 LRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILV--GENLVCK---VADFGLARLIE 156
Query: 391 -SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEI 449
            + YT + G               +   APE AL   G F+     KSD W+ G +  E+
Sbjct: 157 DNEYTARQGAKF-----------PIKWTAPEAALY--GRFTI----KSDVWSFGILLTEL 199
Query: 450 FGHDNPFYQSARNTD--------YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
                  Y    N +        Y +   P+     PE +  L+ +    DP +RP+ E
Sbjct: 200 TTKGRVPYPGMVNREVLDQVERGYRMPCPPE----CPESLHDLMCQCWRKDPEERPTFE 254

>pdb|2X7F|A Chain A, Crystal Structure Of The Kinase Domain Of Human Traf2- And Nck-Interacting Kinase With Wee1chk1 Inhibitor Length = 326

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 11/102 (10%)
Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
           ++L G++HL+ H+  HRD+K  N+LL         ++ + DFG S      +  + +   
Sbjct: 137 EILRGLSHLHQHKVIHRDIKGQNVLL-----TENAEVKLVDFGVSAQLDRTVGRRNT--- 188
Query: 408 IELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEI 449
               G    MAPEV        +  ++ KSD W+ G  A E+
Sbjct: 189 --FIGTPYWMAPEVIACDENPDATYDF-KSDLWSLGITAIEM 227

>pdb|1K3A|A Chain A, Structure Of The Insulin-Like Growth Factor 1 Receptor Kinase Length = 299

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 83/198 (41%), Gaps = 27/198 (13%)
Query: 314 SLFILMKKYNTDLRNYLRERCAQL---------SMHERVLLFTQLLEGVTHLNMHRTAHR 364
           +L I+      DL++YLR    ++         S+ + + +  ++ +G+ +LN ++  HR
Sbjct: 88  TLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHR 147
Query: 365 DLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALA 424
           DL + N ++  +ED T   + I DF        G++      D    G   L+ P   ++
Sbjct: 148 DLAARNCMV--AEDFT---VKIGDF--------GMTRDIXETDXXRKGGKGLL-PVRWMS 193
Query: 425 TPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD----YEVNALPQLNTNVPEV 480
              L   V  + SD W+ G V +EI       YQ   N           L     N P++
Sbjct: 194 PESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPDNCPDM 253
Query: 481 MRRLVAKLLENDPSDRPS 498
           +  L+    + +P  RPS
Sbjct: 254 LLELMRMCWQYNPKMRPS 271

>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To Vinylsulfonamide- Pyrazolopyrimidine 9 Length = 286

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 71/179 (39%), Gaps = 41/179 (22%)
Query: 337 LSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG------ 390
           L + + V +  Q+  G+ ++      HRDL++ NIL+   E+  C    + DFG      
Sbjct: 111 LRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILV--GENLVCK---VADFGLARLIE 165
Query: 391 -SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEI 449
            + YT + G               +   APE AL   G F+     KSD W+ G +  E+
Sbjct: 166 DNEYTARQGAKF-----------PIKWTAPEAALY--GRFTI----KSDVWSFGILLTEL 208
Query: 450 FGHDNPFYQSARNTD--------YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
                  Y    N +        Y +   P+     PE +  L+ +    DP +RP+ E
Sbjct: 209 TTKGRVPYPGMVNREVLDQVERGYRMPCPPE----CPESLHDLMCQCWRKDPEERPTFE 263

>pdb|2ZM3|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor And Isoquinolinedione Inhibitor Length = 308

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 83/198 (41%), Gaps = 27/198 (13%)
Query: 314 SLFILMKKYNTDLRNYLRERCAQL---------SMHERVLLFTQLLEGVTHLNMHRTAHR 364
           +L I+      DL++YLR    ++         S+ + + +  ++ +G+ +LN ++  HR
Sbjct: 97  TLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHR 156
Query: 365 DLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALA 424
           DL + N ++  +ED T   + I DF        G++      D    G   L+ P   ++
Sbjct: 157 DLAARNCMV--AEDFT---VKIGDF--------GMTRDIXETDXXRKGGKGLL-PVRWMS 202
Query: 425 TPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD----YEVNALPQLNTNVPEV 480
              L   V  + SD W+ G V +EI       YQ   N           L     N P++
Sbjct: 203 PESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPDNCPDM 262
Query: 481 MRRLVAKLLENDPSDRPS 498
           +  L+    + +P  RPS
Sbjct: 263 LFELMRMCWQYNPKMRPS 280

>pdb|3O96|A Chain A, Crystal Structure Of Human Akt1 With An Allosteric Inhibitor Length = 446

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 69/161 (42%), Gaps = 26/161 (16%)
Query: 363 HRDLKSDNILLDCSEDNTCPQLVITDFGSSYTN-KSGLSMQYSSADIELGGNVALMAPEV 421
           +RDLK +N++LD         + ITDFG      K G +M+         G    +APEV
Sbjct: 275 YRDLKLENLMLDKD-----GHIKITDFGLCKEGIKDGATMK------TFCGTPEYLAPEV 323
Query: 422 ALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQL---NTNV 477
                      +Y ++ D W  G V YE+     PFY       +E+  + ++    T  
Sbjct: 324 LEDN-------DYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRFPRTLG 376
Query: 478 PEVMRRLVAKLLENDPSDR--PSAELAATVCQLYLWAPKHW 516
           PE  + L++ LL+ DP  R    +E A  + Q   +A   W
Sbjct: 377 PEA-KSLLSGLLKKDPKQRLGGGSEDAKEIMQHRFFAGIVW 416

>pdb|2BDW|A Chain A, Crystal Structure Of The Auto-Inhibited Kinase Domain Of CalciumCALMODULIN ACTIVATED KINASE II Length = 362

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 24/166 (14%)
Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
           Q+LE + + + +   HR+LK +N+LL         +L   DFG +      + +  S A 
Sbjct: 136 QILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLA--DFGLA------IEVNDSEAW 187
Query: 408 IELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDY- 465
               G    ++PEV    P       YSK  D W  G + Y +     PF+   ++  Y 
Sbjct: 188 HGFAGTPGYLSPEVLKKDP-------YSKPVDIWACGVILYILLVGYPPFWDEDQHRLYA 240
Query: 466 EVNA------LPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATV 505
           ++ A       P+ +T  PE  + L+  +L  +P  R +A+ A  V
Sbjct: 241 QIKAGAYDYPSPEWDTVTPEA-KSLIDSMLTVNPKKRITADQALKV 285

>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation Length = 286

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 71/179 (39%), Gaps = 41/179 (22%)
Query: 337 LSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG------ 390
           L + + V +  Q+  G+ ++      HRDL++ NIL+   E+  C    + DFG      
Sbjct: 111 LRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILV--GENLVCK---VADFGLARLIE 165
Query: 391 -SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEI 449
            + YT + G               +   APE AL   G F+     KSD W+ G +  E+
Sbjct: 166 DNEYTARQGAKF-----------PIKWTAPEAALY--GRFTI----KSDVWSFGILLTEL 208
Query: 450 FGHDNPFYQSARNTD--------YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
                  Y    N +        Y +   P+     PE +  L+ +    DP +RP+ E
Sbjct: 209 TTKGRVPYPGMVNREVLDQVERGYRMPCPPE----CPESLHDLMCQCWRKDPEERPTFE 263

>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src Tyrosine Kinase Domain Complexed With Imatinib Length = 286

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 71/179 (39%), Gaps = 41/179 (22%)
Query: 337 LSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG------ 390
           L + + V +  Q+  G+ ++      HRDL++ NIL+   E+  C    + DFG      
Sbjct: 111 LRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILV--GENLVCK---VADFGLARLIE 165
Query: 391 -SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEI 449
            + YT + G               +   APE AL   G F+     KSD W+ G +  E+
Sbjct: 166 DNEYTARQGAKF-----------PIKWTAPEAALY--GRFTI----KSDVWSFGILLTEL 208
Query: 450 FGHDNPFYQSARNTD--------YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
                  Y    N +        Y +   P+     PE +  L+ +    DP +RP+ E
Sbjct: 209 TTKGRVPYPGMVNREVLDQVERGYRMPCPPE----CPESLHDLMCQCWRKDPEERPTFE 263

>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In Complex With The Cancer Drug Imatinib. Length = 286

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 71/179 (39%), Gaps = 41/179 (22%)
Query: 337 LSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG------ 390
           L + + V +  Q+  G+ ++      HRDL++ NIL+   E+  C    + DFG      
Sbjct: 111 LRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILV--GENLVCK---VADFGLARLIE 165
Query: 391 -SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEI 449
            + YT + G               +   APE AL   G F+     KSD W+ G +  E+
Sbjct: 166 DNEYTARQGAKF-----------PIKWTAPEAALY--GRFTI----KSDVWSFGILLTEL 208
Query: 450 FGHDNPFYQSARNTD--------YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
                  Y    N +        Y +   P+     PE +  L+ +    DP +RP+ E
Sbjct: 209 TTKGRVPYPGMVNREVLDQVERGYRMPCPPE----CPESLHDLMCQCWRKDPEERPTFE 263

>pdb|2ZOQ|A Chain A, Structural Dissection Of Human Mitogen-Activated Kinase Erk1 Length = 382

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 16/138 (11%)
Query: 314 SLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
            ++I+     TDL   L+ +  QLS         Q+L G+ +++     HRDLK  N+L+
Sbjct: 120 DVYIVQDLMETDLYKLLKSQ--QLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLI 177
Query: 374 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN 433
                NT   L I DFG +    +     ++    E        APE+ L + G      
Sbjct: 178 -----NTTCDLKICDFGLARI--ADPEHDHTGFLTEXVATRWYRAPEIMLNSKG------ 224
Query: 434 YSKS-DAWTAGTVAYEIF 450
           Y+KS D W+ G +  E+ 
Sbjct: 225 YTKSIDIWSVGCILAEML 242

>pdb|3E7O|A Chain A, Crystal Structure Of Jnk2 Length = 360

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 68/162 (41%), Gaps = 28/162 (17%)
Query: 340 HERV-LLFTQLLEGVTHLNMHRTAHRDLKSDNILL--DCSEDNTCPQLVITDFGSSYTNK 396
           HER+  L  Q+L G+ HL+     HRDLK  NI++  DC+       L I DFG + T  
Sbjct: 123 HERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCT-------LKILDFGLARTAS 175
Query: 397 SGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNP 455
           +   M                APEV L        + Y ++ D W+ G +  E+    + 
Sbjct: 176 TNFMMTPYVV------TRYYRAPEVILG-------MGYKENVDIWSVGCIMGELV-KGSV 221
Query: 456 FYQSARNTDYEVNALPQLNTNVPEVMRRL---VAKLLENDPS 494
            +Q   + D     + QL T   E M  L   V   +EN P+
Sbjct: 222 IFQGTDHIDQWNKVIEQLGTPSAEFMAALQPTVRNYVENRPA 263

>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck Length = 265

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 77/188 (40%), Gaps = 33/188 (17%)
Query: 336 QLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG----- 390
           +L++++ + +  Q+ EG+  +      HRDL++ NIL+  S+  +C    I DFG     
Sbjct: 100 KLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILV--SDTLSCK---IADFGLARLI 154
Query: 391 --SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYE 448
             + YT + G               +   APE      G F+     KSD W+ G +  E
Sbjct: 155 EDNEYTAREGAKFP-----------IKWTAPEA--INYGTFTI----KSDVWSFGILLTE 197
Query: 449 IFGHDNPFYQSARNTDYEVNALPQLN----TNVPEVMRRLVAKLLENDPSDRPSAELAAT 504
           I  H    Y    N +   N           N PE + +L+    +  P DRP+ +   +
Sbjct: 198 IVTHGRIPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRS 257
Query: 505 VCQLYLWA 512
           V + +  A
Sbjct: 258 VLEDFFTA 265

>pdb|3R1N|A Chain A, Mk3 Kinase Bound To Compound 5b Length = 317

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 82/201 (40%), Gaps = 30/201 (14%)
Query: 309 YGRNMSLFILMKKYNTDLRNYLRERCAQ-LSMHERVLLFTQLLEGVTHLNMHRTAHRDLK 367
           +G+   L I+      +L + ++ER  Q  +  E   +   +   +  L+ H  AHRD+K
Sbjct: 77  HGKRCLLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSHNIAHRDVK 136
Query: 368 SDNILLDCSEDNTCPQLVITDFG-SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP 426
            +N+L    E +    L +TDFG +  T ++ L     +           +APEV     
Sbjct: 137 PENLLYTSKEKDAV--LKLTDFGFAKETTQNALQTPCYTP--------YYVAPEV----- 181
Query: 427 GLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSA---------RNTDYEVNALPQLN-T 475
                  Y KS D W+ G + Y +     PFY +          R         P    +
Sbjct: 182 --LGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPGMKRRIRLGQYGFPNPEWS 239
Query: 476 NVPEVMRRLVAKLLENDPSDR 496
            V E  ++L+  LL+ DP++R
Sbjct: 240 EVSEDAKQLIRLLLKTDPTER 260

>pdb|3KN5|A Chain A, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1 In With Amp-Pnp Length = 325

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 87/242 (35%), Gaps = 60/242 (24%)
Query: 271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYL 330
           HPN+V +H  F D + +     L+    L  R+     +    + +I+ K          
Sbjct: 65  HPNIVKLHEVFHDQLHTFLVMELLNGGELFERIKKKKHFSETEASYIMRK---------- 114
Query: 331 RERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG 390
                             L+  V+H++     HRDLK +N+L     DN   ++ I DFG
Sbjct: 115 ------------------LVSAVSHMHDVGVVHRDLKPENLLFTDENDNL--EIKIIDFG 154
Query: 391 SSYTNKSGLSMQYSSADIELGGNVALMAPEVAL--ATPGLFSFVNYSKS-DAWTAGTVAY 447
                          A ++   N  L  P   L  A P L +   Y +S D W+ G + Y
Sbjct: 155 --------------FARLKPPDNQPLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILY 200
Query: 448 EIFGHDNPFYQSARN--TDYEVNALPQLN-----------TNVPEVMRRLVAKLLENDPS 494
            +     PF    R+      V  + ++             NV +  + L+  LL  DP+
Sbjct: 201 TMLSGQVPFQSHDRSLTCTSAVEIMKKIKKGDFSFEGEAWKNVSQEAKDLIQGLLTVDPN 260
Query: 495 DR 496
            R
Sbjct: 261 KR 262

>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family- Selective Tyrosine Kinase Inhibitor Length = 454

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 76/195 (38%), Gaps = 51/195 (26%)
Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG-------SSYTNKSGLS 400
           Q+ EG+  +      HRDL++ NIL+  S    C    I DFG       + YT + G  
Sbjct: 292 QIAEGMAFIEQRNYIHRDLRAANILVSAS--LVCK---IADFGLARVIEDNEYTAREGAK 346
Query: 401 MQYSSADIELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIF--------G 451
                        +   APE         +F +++ KSD W+ G +  EI         G
Sbjct: 347 FP-----------IKWTAPEA-------INFGSFTIKSDVWSFGILLMEIVTYGRIPYPG 388
Query: 452 HDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLW 511
             NP    A    Y    +P+   N PE +  ++ +  +N P +RP+ E   +V   +  
Sbjct: 389 MSNPEVIRALERGYR---MPR-PENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDDF-- 442
Query: 512 APKHWLYGATPSHNE 526
                 Y AT S  E
Sbjct: 443 ------YTATESQXE 451

>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck Length = 271

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 75/183 (40%), Gaps = 33/183 (18%)
Query: 336 QLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG----- 390
           +L++++ + +  Q+ EG+  +      HRDL++ NIL+  S+  +C    I DFG     
Sbjct: 105 KLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILV--SDTLSCK---IADFGLARLI 159
Query: 391 --SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYE 448
             + YT + G               +   APE      G F+     KSD W+ G +  E
Sbjct: 160 EDNEYTAREGAKFP-----------IKWTAPEA--INYGTFTI----KSDVWSFGILLTE 202
Query: 449 IFGHDNPFYQSARNTDYEVNALPQLN----TNVPEVMRRLVAKLLENDPSDRPSAELAAT 504
           I  H    Y    N +   N           N PE + +L+    +  P DRP+ +   +
Sbjct: 203 IVTHGRIPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRS 262
Query: 505 VCQ 507
           V +
Sbjct: 263 VLE 265

>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b Length = 277

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 75/183 (40%), Gaps = 33/183 (18%)
Query: 336 QLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG----- 390
           +L++++ + +  Q+ EG+  +      HRDL++ NIL+  S+  +C    I DFG     
Sbjct: 111 KLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILV--SDTLSCK---IADFGLARLI 165
Query: 391 --SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYE 448
             + YT + G               +   APE      G F+     KSD W+ G +  E
Sbjct: 166 EDNEYTAREGAKFP-----------IKWTAPEA--INYGTFTI----KSDVWSFGILLTE 208
Query: 449 IFGHDNPFYQSARNTDYEVNALPQLN----TNVPEVMRRLVAKLLENDPSDRPSAELAAT 504
           I  H    Y    N +   N           N PE + +L+    +  P DRP+ +   +
Sbjct: 209 IVTHGRIPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRS 268
Query: 505 VCQ 507
           V +
Sbjct: 269 VLE 271

>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii Inhibtor Nvp-Bbt594 Length = 295

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 20/143 (13%)
Query: 311 RNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFT-QLLEGVTHLNMHRTAHRDLKSD 369
           RN+ L +    Y + LR+YL++   ++  H ++L +T Q+ +G+ +L   R  HRDL + 
Sbjct: 86  RNLKLIMEYLPYGS-LRDYLQKHKERID-HIKLLQYTSQICKGMEYLGTKRYIHRDLATR 143
Query: 370 NILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALM--APEVALATPG 427
           NIL++        ++ I DFG +      L        ++  G   +   APE    T  
Sbjct: 144 NILVENEN-----RVKIGDFGLTKV----LPQDKEFFKVKEPGESPIFWYAPES--LTES 192
Query: 428 LFSFVNYSKSDAWTAGTVAYEIF 450
            FS      SD W+ G V YE+F
Sbjct: 193 KFSVA----SDVWSFGVVLYELF 211

>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck Length = 277

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 75/183 (40%), Gaps = 33/183 (18%)
Query: 336 QLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG----- 390
           +L++++ + +  Q+ EG+  +      HRDL++ NIL+  S+  +C    I DFG     
Sbjct: 110 KLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILV--SDTLSCK---IADFGLARLI 164
Query: 391 --SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYE 448
             + YT + G               +   APE      G F+     KSD W+ G +  E
Sbjct: 165 EDNEYTAREGAKFP-----------IKWTAPEA--INYGTFTI----KSDVWSFGILLTE 207
Query: 449 IFGHDNPFYQSARNTDYEVNALPQLN----TNVPEVMRRLVAKLLENDPSDRPSAELAAT 504
           I  H    Y    N +   N           N PE + +L+    +  P DRP+ +   +
Sbjct: 208 IVTHGRIPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRS 267
Query: 505 VCQ 507
           V +
Sbjct: 268 VLE 270

>pdb|1JQH|A Chain A, Igf-1 Receptor Kinase Domain Length = 308

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 86/205 (41%), Gaps = 41/205 (20%)
Query: 314 SLFILMKKYNTDLRNYLRERCAQL---------SMHERVLLFTQLLEGVTHLNMHRTAHR 364
           +L I+      DL++YLR    ++         S+ + + +  ++ +G+ +LN ++  HR
Sbjct: 97  TLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHR 156
Query: 365 DLKSDNILLDCSEDNTCPQLVITDFG-------SSYTNKSGLSMQYSSADIELGGNVALM 417
           DL + N ++  +ED T   + I DFG       + Y  K G  +            V  M
Sbjct: 157 DLAARNCMV--AEDFT---VKIGDFGMTRDIYETDYYRKGGKGLL----------PVRWM 201
Query: 418 APEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD----YEVNALPQL 473
           +PE      G+F+    + SD W+ G V +EI       YQ   N           L   
Sbjct: 202 SPES--LKDGVFT----TYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDK 255
Query: 474 NTNVPEVMRRLVAKLLENDPSDRPS 498
             N P+++  L+    + +P  RPS
Sbjct: 256 PDNCPDMLFELMRMCWQYNPKMRPS 280

>pdb|3GQI|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 326

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 14/115 (12%)
Query: 336 QLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTN 395
           QLS  + V    Q+  G+ +L   +  HRDL + N+L+  +EDN    + I DFG +  +
Sbjct: 146 QLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLV--TEDNV---MKIADFGLA-RD 199
Query: 396 KSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIF 450
              +     + +  L   V  MAPE       LF  +   +SD W+ G + +EIF
Sbjct: 200 IHHIDXXKKTTNGRL--PVKWMAPE------ALFDRIYTHQSDVWSFGVLLWEIF 246

>pdb|3QA8|A Chain A, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta Length = 676

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 70/175 (40%), Gaps = 27/175 (15%)
Query: 291 SSLIYPSALPARLNPTGGYG---RNMSLFILMKKYNTDLRNYLR--ERCAQLSMHERVLL 345
             L +P+ + AR  P G       ++ L  +      DLR YL   E C  L       L
Sbjct: 67  KKLNHPNVVSAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTL 126
Query: 346 FTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLV---ITDFGSSYTNKSGLSMQ 402
            + +   + +L+ +R  HRDLK +NI+L        PQ +   I D G +     G    
Sbjct: 127 LSDISSALRYLHENRIIHRDLKPENIVL-----QPGPQRLIHKIIDLGYAKELDQG---- 177
Query: 403 YSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPF 456
                 E  G +  +APE       L     Y+ + D W+ GT+A+E      PF
Sbjct: 178 --ELCTEFVGTLQYLAPE-------LLEQKKYTVTVDYWSFGTLAFECITGFRPF 223

>pdb|3NZ0|A Chain A, Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 302

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 58/129 (44%), Gaps = 19/129 (14%)
Query: 326 LRNYLRERCAQLSMHERVLLFTQ-LLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           LR+YL      L+   ++LLF Q + EG+ +L+     HR+L + N+LLD        +L
Sbjct: 105 LRDYLPRHSIGLA---QLLLFAQQICEGMAYLHAQHYIHRNLAARNVLLDND------RL 155
Query: 385 V-ITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAG 443
           V I DFG +     G   +Y     +    V   APE       L  +  Y  SD W+ G
Sbjct: 156 VKIGDFGLAKAVPEG--HEYYRVREDGDSPVFWYAPEC------LKEYKFYYASDVWSFG 207
Query: 444 TVAYEIFGH 452
              YE+  H
Sbjct: 208 VTLYELLTH 216

>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240->arg, Met302- >leu) In Complex With 1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]- Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea Length = 272

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 65/152 (42%), Gaps = 20/152 (13%)
Query: 347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSA 406
           T+L   +++ +  R  HRD+K +N+LL      +  +L I DFG S           SS 
Sbjct: 119 TELANALSYCHSKRVIHRDIKPENLLL-----GSNGELKIADFGWSVHAP-------SSR 166
Query: 407 DIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE 466
              L G +  + PE+      +   ++  K D W+ G + YE      PF        Y 
Sbjct: 167 RTTLCGTLDYLPPEM------IEGRMHDEKVDLWSLGVLCYEFLVGMPPFEAHTYQETYR 220
Query: 467 VNALPQLN--TNVPEVMRRLVAKLLENDPSDR 496
             +  +      V E  R L+++LL+++ S R
Sbjct: 221 RISRVEFTFPDFVTEGARDLISRLLKHNASQR 252

>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 71/179 (39%), Gaps = 41/179 (22%)
Query: 337 LSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG------ 390
           L + + V +  Q+  G+ ++      HRDL++ NIL+   E+  C    + DFG      
Sbjct: 278 LRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILV--GENLVCK---VADFGLGRLIE 332
Query: 391 -SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEI 449
            + YT + G               +   APE AL   G F+     KSD W+ G +  E+
Sbjct: 333 DNEYTARQGAKFP-----------IKWTAPEAALY--GRFTI----KSDVWSFGILLTEL 375
Query: 450 FGHDNPFYQSARNTD--------YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
                  Y    N +        Y +   P+     PE +  L+ +    DP +RP+ E
Sbjct: 376 TTKGRVPYPGMVNREVLDQVERGYRMPCPPE----CPESLHDLMCQCWRKDPEERPTFE 430

>pdb|3RZF|A Chain A, Crystal Structure Of Inhibitor Of Kappab Kinase Beta (I4122) Length = 677

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 70/175 (40%), Gaps = 27/175 (15%)
Query: 291 SSLIYPSALPARLNPTGGYG---RNMSLFILMKKYNTDLRNYLR--ERCAQLSMHERVLL 345
             L +P+ + AR  P G       ++ L  +      DLR YL   E C  L       L
Sbjct: 68  KKLNHPNVVSAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTL 127
Query: 346 FTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLV---ITDFGSSYTNKSGLSMQ 402
            + +   + +L+ +R  HRDLK +NI+L        PQ +   I D G +     G    
Sbjct: 128 LSDISSALRYLHENRIIHRDLKPENIVL-----QPGPQRLIHKIIDLGYAKELDQG---- 178
Query: 403 YSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPF 456
                 E  G +  +APE       L     Y+ + D W+ GT+A+E      PF
Sbjct: 179 --ELCTEFVGTLQYLAPE-------LLEQKKYTVTVDYWSFGTLAFECITGFRPF 224

>pdb|2OJ9|A Chain A, Structure Of Igf-1r Kinase Domain Complexed With A Benzimidazole Inhibitor Length = 307

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 86/205 (41%), Gaps = 41/205 (20%)
Query: 314 SLFILMKKYNTDLRNYLRERCAQL---------SMHERVLLFTQLLEGVTHLNMHRTAHR 364
           +L I+      DL++YLR    ++         S+ + + +  ++ +G+ +LN ++  HR
Sbjct: 96  TLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHR 155
Query: 365 DLKSDNILLDCSEDNTCPQLVITDFG-------SSYTNKSGLSMQYSSADIELGGNVALM 417
           DL + N ++  +ED T   + I DFG       + Y  K G  +            V  M
Sbjct: 156 DLAARNCMV--AEDFT---VKIGDFGMTRDIYETDYYRKGGKGLL----------PVRWM 200
Query: 418 APEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD----YEVNALPQL 473
           +PE      G+F+    + SD W+ G V +EI       YQ   N           L   
Sbjct: 201 SPES--LKDGVFT----TYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDK 254
Query: 474 NTNVPEVMRRLVAKLLENDPSDRPS 498
             N P+++  L+    + +P  RPS
Sbjct: 255 PDNCPDMLFELMRMCWQYNPKMRPS 279

>pdb|2BUJ|A Chain A, Crystal Structure Of The Human Serine-Threonine Kinase 16 In Complex With Staurosporine Length = 317

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 82/182 (45%), Gaps = 19/182 (10%)
Query: 330 LRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDF 389
           L+++   L+  + + L   +  G+  ++    AHRDLK  NILL    D   P  V+ D 
Sbjct: 124 LKDKGNFLTEDQILWLLLGICRGLEAIHAKGYAHRDLKPTNILLG---DEGQP--VLMDL 178
Query: 390 GSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY----SKSDAWTAGTV 445
           GS   N++ + ++ S   + L  + A     ++   P LFS  ++     ++D W+ G V
Sbjct: 179 GS--MNQACIHVEGSRQALTL-QDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCV 235
Query: 446 AYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMR------RLVAKLLENDPSDRPSA 499
            Y +   + P+    +  D    A+ Q   ++P+  R      +L+  ++  DP  RP  
Sbjct: 236 LYAMMFGEGPYDMVFQKGDSVALAV-QNQLSIPQSPRHSSALWQLLNSMMTVDPHQRPHI 294
Query: 500 EL 501
            L
Sbjct: 295 PL 296

>pdb|3QQU|A Chain A, Cocrystal Structure Of Unphosphorylated Igf With Pyrimidine 8 Length = 301

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 86/205 (41%), Gaps = 41/205 (20%)
Query: 314 SLFILMKKYNTDLRNYLRERCAQL---------SMHERVLLFTQLLEGVTHLNMHRTAHR 364
           +L I+      DL++YLR    ++         S+ + + +  ++ +G+ +LN ++  HR
Sbjct: 90  TLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHR 149
Query: 365 DLKSDNILLDCSEDNTCPQLVITDFG-------SSYTNKSGLSMQYSSADIELGGNVALM 417
           DL + N ++  +ED T   + I DFG       + Y  K G  +            V  M
Sbjct: 150 DLAARNCMV--AEDFT---VKIGDFGMTRDIYETDYYRKGGKGLL----------PVRWM 194
Query: 418 APEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD----YEVNALPQL 473
           +PE      G+F+    + SD W+ G V +EI       YQ   N           L   
Sbjct: 195 SPES--LKDGVFT----TYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDK 248
Query: 474 NTNVPEVMRRLVAKLLENDPSDRPS 498
             N P+++  L+    + +P  RPS
Sbjct: 249 PDNCPDMLFELMRMCWQYNPKMRPS 273

>pdb|2PL0|A Chain A, Lck Bound To Imatinib Length = 289

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 75/187 (40%), Gaps = 41/187 (21%)
Query: 336 QLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG----- 390
           +L++++ + +  Q+ EG+  +      HRDL++ NIL+  S+  +C    I DFG     
Sbjct: 115 KLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILV--SDTLSCK---IADFGLARLI 169
Query: 391 --SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS----KSDAWTAGT 444
             + YT + G               +   APE           +NY     KSD W+ G 
Sbjct: 170 EDNEYTAREGAKFP-----------IKWTAPEA----------INYGTFTIKSDVWSFGI 208
Query: 445 VAYEIFGHDNPFYQSARNTDYEVNALPQLN----TNVPEVMRRLVAKLLENDPSDRPSAE 500
           +  EI  H    Y    N +   N           N PE + +L+    +  P DRP+ +
Sbjct: 209 LLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFD 268
Query: 501 LAATVCQ 507
              +V +
Sbjct: 269 YLRSVLE 275

>pdb|3LVP|A Chain A, Crystal Structure Of Bisphosphorylated Igf1-R Kinase Domain (2p) In Complex With A Bis-Azaindole Inhibitor Length = 336

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 85/205 (41%), Gaps = 41/205 (20%)
Query: 314 SLFILMKKYNTDLRNYLRERCAQL---------SMHERVLLFTQLLEGVTHLNMHRTAHR 364
           +L I+      DL++YLR    ++         S+ + + +  ++ +G+ +LN ++  HR
Sbjct: 125 TLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHR 184
Query: 365 DLKSDNILLDCSEDNTCPQLVITDFG-------SSYTNKSGLSMQYSSADIELGGNVALM 417
           DL + N ++  +ED T     I DFG       + Y  K G  +            V  M
Sbjct: 185 DLAARNCMV--AEDFTVK---IGDFGMTRDIYETDYYRKGGKGLL----------PVRWM 229
Query: 418 APEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD----YEVNALPQL 473
           +PE      G+F+    + SD W+ G V +EI       YQ   N           L   
Sbjct: 230 SPES--LKDGVFT----TYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDK 283
Query: 474 NTNVPEVMRRLVAKLLENDPSDRPS 498
             N P+++  L+    + +P  RPS
Sbjct: 284 PDNCPDMLFELMRMCWQYNPKMRPS 308

>pdb|4H3Q|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 61/143 (42%), Gaps = 26/143 (18%)
Query: 314 SLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
            ++I+     TDL   L+ +   LS         Q+L G+ +++     HRDLK  N+LL
Sbjct: 102 DVYIVQDLMETDLYKLLKTQ--HLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLL 159
Query: 374 DCSEDNTCPQLVITDFGSSYT-----NKSGLSMQYSSADIELGGNVALMAPEVALATPGL 428
                NT   L I DFG +       + +G   +Y +            APE+ L + G 
Sbjct: 160 -----NTTSDLKICDFGLARVADPDHDHTGFLTEYVATR-------WYRAPEIMLNSKG- 206
Query: 429 FSFVNYSKS-DAWTAGTVAYEIF 450
                Y+KS D W+ G +  E+ 
Sbjct: 207 -----YTKSIDIWSVGCILAEML 224

>pdb|3O23|A Chain A, Human Unphosphorylated Igf1-R Kinase Domain In Complex With An Hydantoin Inhibitor Length = 305

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 86/205 (41%), Gaps = 41/205 (20%)
Query: 314 SLFILMKKYNTDLRNYLRERCAQL---------SMHERVLLFTQLLEGVTHLNMHRTAHR 364
           +L I+      DL++YLR    ++         S+ + + +  ++ +G+ +LN ++  HR
Sbjct: 94  TLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHR 153
Query: 365 DLKSDNILLDCSEDNTCPQLVITDFG-------SSYTNKSGLSMQYSSADIELGGNVALM 417
           DL + N ++  +ED T   + I DFG       + Y  K G  +            V  M
Sbjct: 154 DLAARNCMV--AEDFT---VKIGDFGMTRDIYETDYYRKGGKGLL----------PVRWM 198
Query: 418 APEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD----YEVNALPQL 473
           +PE      G+F+    + SD W+ G V +EI       YQ   N           L   
Sbjct: 199 SPES--LKDGVFT----TYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDK 252
Query: 474 NTNVPEVMRRLVAKLLENDPSDRPS 498
             N P+++  L+    + +P  RPS
Sbjct: 253 PDNCPDMLFELMRMCWQYNPKMRPS 277

>pdb|4FUX|A Chain A, Crystal Structure Of The Erk2 Complexed With E75 Length = 360

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 61/144 (42%), Gaps = 26/144 (18%)
Query: 314 SLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
            ++I+     TDL   L+ +   LS         Q+L G+ +++     HRDLK  N+LL
Sbjct: 100 DVYIVQDLMETDLYKLLKTQ--HLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLL 157
Query: 374 DCSEDNTCPQLVITDFGSSYT-----NKSGLSMQYSSADIELGGNVALMAPEVALATPGL 428
                NT   L I DFG +       + +G   +Y +            APE+ L + G 
Sbjct: 158 -----NTTXDLKICDFGLARVADPDHDHTGFLTEYVATR-------WYRAPEIMLNSKG- 204
Query: 429 FSFVNYSKS-DAWTAGTVAYEIFG 451
                Y+KS D W+ G +  E+  
Sbjct: 205 -----YTKSIDIWSVGCILAEMLS 223

>pdb|3QYW|A Chain A, Crystal Structure Of Erk2 In Complex With An Inhibitor Length = 364

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 16/139 (11%)
Query: 314 SLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
            ++I+     TDL   L+ +   LS         Q+L G+ +++     HRDLK  N+LL
Sbjct: 104 DVYIVQDLMETDLYKLLKTQ--HLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLL 161
Query: 374 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN 433
                NT   L I DFG +    +     ++    E        APE+ L + G      
Sbjct: 162 -----NTTXDLKICDFGLARV--ADPDHDHTGFLTEYVATRWYRAPEIMLNSKG------ 208
Query: 434 YSKS-DAWTAGTVAYEIFG 451
           Y+KS D W+ G +  E+  
Sbjct: 209 YTKSIDIWSVGCILAEMLS 227

>pdb|4GSB|A Chain A, Monoclinic Crystal Form Of The Apo-Erk2 Length = 364

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 16/139 (11%)
Query: 314 SLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
            ++I+     TDL   L+ +   LS         Q+L G+ +++     HRDLK  N+LL
Sbjct: 104 DVYIVQDLMETDLYKLLKTQ--HLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLL 161
Query: 374 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN 433
                NT   L I DFG +    +     ++    E        APE+ L + G      
Sbjct: 162 -----NTTXDLKICDFGLARV--ADPDHDHTGFLTEYVATRWYRAPEIMLNSKG------ 208
Query: 434 YSKS-DAWTAGTVAYEIFG 451
           Y+KS D W+ G +  E+  
Sbjct: 209 YTKSIDIWSVGCILAEMLS 227

>pdb|4FV7|A Chain A, Crystal Structure Of The Erk2 Complexed With E94 Length = 360

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 61/144 (42%), Gaps = 26/144 (18%)
Query: 314 SLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
            ++I+     TDL   L+ +   LS         Q+L G+ +++     HRDLK  N+LL
Sbjct: 100 DVYIVQDLMETDLYKLLKTQ--HLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLL 157
Query: 374 DCSEDNTCPQLVITDFGSSYT-----NKSGLSMQYSSADIELGGNVALMAPEVALATPGL 428
                NT   L I DFG +       + +G   +Y +            APE+ L + G 
Sbjct: 158 -----NTTXDLKICDFGLARVADPDHDHTGFLTEYVATR-------WYRAPEIMLNSKG- 204
Query: 429 FSFVNYSKS-DAWTAGTVAYEIFG 451
                Y+KS D W+ G +  E+  
Sbjct: 205 -----YTKSIDIWSVGCILAEMLS 223

>pdb|3NYX|A Chain A, Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-Thiadiazole- Thiophene Inhibitor Length = 302

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 58/129 (44%), Gaps = 19/129 (14%)
Query: 326 LRNYLRERCAQLSMHERVLLFTQ-LLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           LR+YL      L+   ++LLF Q + EG+ +L+     HR+L + N+LLD        +L
Sbjct: 105 LRDYLPRHSIGLA---QLLLFAQQICEGMAYLHSQHYIHRNLAARNVLLDND------RL 155
Query: 385 V-ITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAG 443
           V I DFG +     G   +Y     +    V   APE       L  +  Y  SD W+ G
Sbjct: 156 VKIGDFGLAKAVPEG--HEYYRVREDGDSPVFWYAPEC------LKEYKFYYASDVWSFG 207
Query: 444 TVAYEIFGH 452
              YE+  H
Sbjct: 208 VTLYELLTH 216

>pdb|4FV6|A Chain A, Crystal Structure Of The Erk2 Complexed With E57 Length = 360

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 16/139 (11%)
Query: 314 SLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
            ++I+     TDL   L+ +   LS         Q+L G+ +++     HRDLK  N+LL
Sbjct: 100 DVYIVQDLMETDLYKLLKTQ--HLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLL 157
Query: 374 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN 433
                NT   L I DFG +    +     ++    E        APE+ L + G      
Sbjct: 158 -----NTTCDLKICDFGLARV--ADPDHDHTGFLTEYVATRWYRAPEIMLNSKG------ 204
Query: 434 YSKS-DAWTAGTVAYEIFG 451
           Y+KS D W+ G +  E+  
Sbjct: 205 YTKSIDIWSVGCILAEMLS 223

>pdb|4E20|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 290

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 55/126 (43%), Gaps = 17/126 (13%)
Query: 326 LRNYLRERCAQLSMHERVLLFTQ-LLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           LR+YL   C  L+   ++LLF Q + EG+ +L+     HR L + N+LLD   D     +
Sbjct: 99  LRDYLPRHCVGLA---QLLLFAQQICEGMAYLHAQHYIHRALAARNVLLD--NDRL---V 150
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGT 444
            I DFG +     G   +Y     +    V   APE       L     Y  SD W+ G 
Sbjct: 151 KIGDFGLAKAVPEG--HEYYRVREDGDSPVFWYAPEC------LKECKFYYASDVWSFGV 202
Query: 445 VAYEIF 450
             YE+ 
Sbjct: 203 TLYELL 208

>pdb|2V55|A Chain A, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 406

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 13/99 (13%)
Query: 363 HRDLKSDNILLDCSEDNTCPQLVITDFGSSYT-NKSGLSMQYSSADIELGGNVALMAPEV 421
           HRD+K DN+LLD S       L + DFG+    NK G+    ++      G    ++PEV
Sbjct: 196 HRDVKPDNMLLDKS-----GHLKLADFGTCMKMNKEGMVRCDTAV-----GTPDYISPEV 245
Query: 422 ALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSA 460
            L + G   +    + D W+ G   YE+   D PFY  +
Sbjct: 246 -LKSQGGDGYYG-RECDWWSVGVFLYEMLVGDTPFYADS 282

>pdb|4E1Z|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 291

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 55/126 (43%), Gaps = 17/126 (13%)
Query: 326 LRNYLRERCAQLSMHERVLLFTQ-LLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           LR+YL   C  L+   ++LLF Q + EG+ +L+     HR L + N+LLD   D     +
Sbjct: 100 LRDYLPRHCVGLA---QLLLFAQQICEGMAYLHAQHYIHRALAARNVLLD--NDRL---V 151
Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGT 444
            I DFG +     G   +Y     +    V   APE       L     Y  SD W+ G 
Sbjct: 152 KIGDFGLAKAVPEG--HEYYRVREDGDSPVFWYAPEC------LKECKFYYASDVWSFGV 203
Query: 445 VAYEIF 450
             YE+ 
Sbjct: 204 TLYELL 209

>pdb|3ZUV|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 364

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 16/139 (11%)
Query: 314 SLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
            ++I+     TDL   L+ +   LS         Q+L G+ +++     HRDLK  N+LL
Sbjct: 104 DVYIVQDLMETDLYKLLKTQ--HLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLL 161
Query: 374 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN 433
                NT   L I DFG +    +     ++    E        APE+ L + G      
Sbjct: 162 -----NTTCDLKICDFGLARV--ADPDHDHTGFLXEXVATRWYRAPEIMLNSKG------ 208
Query: 434 YSKS-DAWTAGTVAYEIFG 451
           Y+KS D W+ G +  E+  
Sbjct: 209 YTKSIDIWSVGCILAEMLS 227

>pdb|2ERK|A Chain A, Phosphorylated Map Kinase Erk2 Length = 365

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 16/139 (11%)
Query: 314 SLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
            ++I+     TDL   L+ +   LS         Q+L G+ +++     HRDLK  N+LL
Sbjct: 105 DVYIVQDLMETDLYKLLKTQ--HLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLL 162
Query: 374 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN 433
                NT   L I DFG +    +     ++    E        APE+ L + G      
Sbjct: 163 -----NTTCDLKICDFGLARV--ADPDHDHTGFLXEXVATRWYRAPEIMLNSKG------ 209
Query: 434 YSKS-DAWTAGTVAYEIFG 451
           Y+KS D W+ G +  E+  
Sbjct: 210 YTKSIDIWSVGCILAEMLS 228

>pdb|3V8S|A Chain A, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex With Indazole Derivative (Compound 18) Length = 410

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 13/99 (13%)
Query: 363 HRDLKSDNILLDCSEDNTCPQLVITDFGSSYT-NKSGLSMQYSSADIELGGNVALMAPEV 421
           HRD+K DN+LLD S       L + DFG+    NK G+    ++      G    ++PEV
Sbjct: 191 HRDVKPDNMLLDKS-----GHLKLADFGTCMKMNKEGMVRCDTAV-----GTPDYISPEV 240
Query: 422 ALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSA 460
            L + G   +    + D W+ G   YE+   D PFY  +
Sbjct: 241 -LKSQGGDGYYG-RECDWWSVGVFLYEMLVGDTPFYADS 277

>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7) Length = 318

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 76/184 (41%), Gaps = 21/184 (11%)
Query: 323 NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 382
           N  L  +LR+   Q ++ + V +   +  G+ +L      HRDL + NIL+     N+  
Sbjct: 128 NGALDAFLRKHDGQFTVIQLVGMLRGIAAGMRYLADMGYVHRDLAARNILV-----NSNL 182
Query: 383 QLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY-SKSDAWT 441
              ++DFG S   +      Y++     GG +      V    P    +  + S SD W+
Sbjct: 183 VCKVSDFGLSRVIEDDPEAVYTTT----GGKIP-----VRWTAPEAIQYRKFTSASDVWS 233
Query: 442 AGTVAYEIFGHDNPFYQSARNTDYEVNALPQ-----LNTNVPEVMRRLVAKLLENDPSDR 496
            G V +E+  +    Y    N D  + A+ +        + P  + +L+    + + ++R
Sbjct: 234 YGIVMWEVMSYGERPYWDMSNQDV-IKAIEEGYRLPAPMDCPAGLHQLMLDCWQKERAER 292
Query: 497 PSAE 500
           P  E
Sbjct: 293 PKFE 296

>pdb|1I44|A Chain A, Crystallographic Studies Of An Activation Loop Mutant Of The Insulin Receptor Tyrosine Kinase Length = 306

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 87/203 (42%), Gaps = 37/203 (18%)
Query: 314 SLFILMKKYNTDLRNYLRERCAQL---------SMHERVLLFTQLLEGVTHLNMHRTAHR 364
           +L ++    + DL++YLR    +          ++ E + +  ++ +G+ +LN  +  HR
Sbjct: 95  TLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNAKKFVHR 154
Query: 365 DLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGN----VALMAPE 420
           DL + N ++  + D T   + I DFG +          Y +A    GG     V  MAPE
Sbjct: 155 DLAARNCMV--AHDFT---VKIGDFGMTRD-------IYETAYYRKGGKGLLPVRWMAPE 202
Query: 421 VALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD-----YEVNALPQLNT 475
                 G+F+    + SD W+ G V +EI       YQ   N        +   L Q + 
Sbjct: 203 S--LKDGVFT----TSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVMDGGYLDQPD- 255
Query: 476 NVPEVMRRLVAKLLENDPSDRPS 498
           N PE +  L+    + +P  RP+
Sbjct: 256 NCPERVTDLMRMCWQFNPKMRPT 278

>pdb|3I81|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor (Igf-1r-Wt) Complex With Bms-754807 [1-(4-((5-Cyclopropyl- 1h-Pyrazol-3-Yl)amino)pyrrolo[2,1-F][1,2, 4]triazin-2-Yl)-N- (6-Fluoro-3-Pyridinyl)-2-Methyl-L-Prolinamide] Length = 315

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 86/205 (41%), Gaps = 41/205 (20%)
Query: 314 SLFILMKKYNTDLRNYLRERCAQL---------SMHERVLLFTQLLEGVTHLNMHRTAHR 364
           +L I+      DL++YLR    ++         S+ + + +  ++ +G+ +LN ++  HR
Sbjct: 96  TLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHR 155
Query: 365 DLKSDNILLDCSEDNTCPQLVITDFG-------SSYTNKSGLSMQYSSADIELGGNVALM 417
           DL + N ++  +ED T   + I DFG       + Y  K G  +            V  M
Sbjct: 156 DLAARNCMV--AEDFT---VKIGDFGMTRDIYETDYYRKGGKGLL----------PVRWM 200
Query: 418 APEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD----YEVNALPQL 473
           +PE      G+F+    + SD W+ G V +EI       YQ   N           L   
Sbjct: 201 SPES--LKDGVFT----TYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDK 254
Query: 474 NTNVPEVMRRLVAKLLENDPSDRPS 498
             N P+++  L+    + +P  RPS
Sbjct: 255 PDNCPDMLFELMRMCWQYNPKMRPS 279

>pdb|3TEI|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 61/144 (42%), Gaps = 26/144 (18%)
Query: 314 SLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
            ++I+     TDL   L+ +   LS         Q+L G+ +++     HRDLK  N+LL
Sbjct: 102 DVYIVQDLMETDLYKLLKTQ--HLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLL 159
Query: 374 DCSEDNTCPQLVITDFGSSYT-----NKSGLSMQYSSADIELGGNVALMAPEVALATPGL 428
                NT   L I DFG +       + +G   +Y +            APE+ L + G 
Sbjct: 160 -----NTTCDLKICDFGLARVADPDHDHTGFLTEYVATR-------WYRAPEIMLNSKG- 206
Query: 429 FSFVNYSKS-DAWTAGTVAYEIFG 451
                Y+KS D W+ G +  E+  
Sbjct: 207 -----YTKSIDIWSVGCILAEMLS 225

>pdb|2Y9Q|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 16/139 (11%)
Query: 314 SLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
            ++I+     TDL   L+ +   LS         Q+L G+ +++     HRDLK  N+LL
Sbjct: 102 DVYIVQDLMETDLYKLLKTQ--HLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLL 159
Query: 374 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN 433
                NT   L I DFG +    +     ++    E        APE+ L + G      
Sbjct: 160 -----NTTCDLKICDFGLARV--ADPDHDHTGFLTEYVATRWYRAPEIMLNSKG------ 206
Query: 434 YSKS-DAWTAGTVAYEIFG 451
           Y+KS D W+ G +  E+  
Sbjct: 207 YTKSIDIWSVGCILAEMLS 225

>pdb|2OJG|A Chain A, Crystal Structure Of Erk2 In Complex With N,n-dimethyl-4-(4- Phenyl-1h-pyrazol-3-yl)-1h-pyrrole-2-carboxamide Length = 380

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 61/143 (42%), Gaps = 26/143 (18%)
Query: 314 SLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
            ++I+     TDL   L+ +   LS         Q+L G+ +++     HRDLK  N+LL
Sbjct: 120 DVYIVQDLMETDLYKLLKTQ--HLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLL 177
Query: 374 DCSEDNTCPQLVITDFGSSYT-----NKSGLSMQYSSADIELGGNVALMAPEVALATPGL 428
                NT   L I DFG +       + +G   +Y +            APE+ L + G 
Sbjct: 178 -----NTTCDLKICDFGLARVADPDHDHTGFLTEYVATR-------WYRAPEIMLNSKG- 224
Query: 429 FSFVNYSKS-DAWTAGTVAYEIF 450
                Y+KS D W+ G +  E+ 
Sbjct: 225 -----YTKSIDIWSVGCILAEML 242

>pdb|3O71|A Chain A, Crystal Structure Of Erk2DCC PEPTIDE COMPLEX Length = 358

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 16/139 (11%)
Query: 314 SLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
            ++I+     TDL   L+ +   LS         Q+L G+ +++     HRDLK  N+LL
Sbjct: 98  DVYIVQDLMETDLYKLLKTQ--HLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLL 155
Query: 374 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN 433
                NT   L I DFG +    +     ++    E        APE+ L + G      
Sbjct: 156 -----NTTCDLKICDFGLARV--ADPDHDHTGFLTEYVATRWYRAPEIMLNSKG------ 202
Query: 434 YSKS-DAWTAGTVAYEIFG 451
           Y+KS D W+ G +  E+  
Sbjct: 203 YTKSIDIWSVGCILAEMLS 221

>pdb|3ZU7|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 365

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 16/139 (11%)
Query: 314 SLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
            ++I+     TDL   L+ +   LS         Q+L G+ +++     HRDLK  N+LL
Sbjct: 105 DVYIVQDLMETDLYKLLKTQ--HLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLL 162
Query: 374 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN 433
                NT   L I DFG +    +     ++    E        APE+ L + G      
Sbjct: 163 -----NTTCDLKICDFGLARV--ADPDHDHTGFLTEYVATRWYRAPEIMLNSKG------ 209
Query: 434 YSKS-DAWTAGTVAYEIFG 451
           Y+KS D W+ G +  E+  
Sbjct: 210 YTKSIDIWSVGCILAEMLS 228

>pdb|2Z7L|A Chain A, Unphosphorylated Mitogen Activated Protein Kinase Erk2 In Complex With (4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin 2-Yl]amino}phenyl)acetic Acid Length = 366

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 16/139 (11%)
Query: 314 SLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
            ++I+     TDL   L+ +   LS         Q+L G+ +++     HRDLK  N+LL
Sbjct: 106 DVYIVQDLMETDLYKLLKTQ--HLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLL 163
Query: 374 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN 433
                NT   L I DFG +    +     ++    E        APE+ L + G      
Sbjct: 164 -----NTTCDLKICDFGLARV--ADPDHDHTGFLTEYVATRWYRAPEIMLNSKG------ 210
Query: 434 YSKS-DAWTAGTVAYEIFG 451
           Y+KS D W+ G +  E+  
Sbjct: 211 YTKSIDIWSVGCILAEMLS 229

>pdb|3C9W|A Chain A, Crystal Structure Of Erk-2 With Hypothemycin Covalently Bound Length = 357

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 16/139 (11%)
Query: 314 SLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
            ++I+     TDL   L+ +   LS         Q+L G+ +++     HRDLK  N+LL
Sbjct: 97  DVYIVQDLMETDLYKLLKTQ--HLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLL 154
Query: 374 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN 433
                NT   L I DFG +    +     ++    E        APE+ L + G      
Sbjct: 155 -----NTTCDLKICDFGLARV--ADPDHDHTGFLTEYVATRWYRAPEIMLNSKG------ 201
Query: 434 YSKS-DAWTAGTVAYEIFG 451
           Y+KS D W+ G +  E+  
Sbjct: 202 YTKSIDIWSVGCILAEMLS 220

>pdb|2FYS|B Chain B, Crystal Structure Of Erk2 Complex With Kim Peptide Derived From Mkp3 Length = 364

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 16/139 (11%)
Query: 314 SLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
            ++I+     TDL   L+ +   LS         Q+L G+ +++     HRDLK  N+LL
Sbjct: 104 DVYIVQDLMETDLYKLLKTQ--HLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLL 161
Query: 374 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN 433
                NT   L I DFG +    +     ++    E        APE+ L + G      
Sbjct: 162 -----NTTCDLKICDFGLARV--ADPDHDHTGFLTEYVATRWYRAPEIMLNSKG------ 208
Query: 434 YSKS-DAWTAGTVAYEIFG 451
           Y+KS D W+ G +  E+  
Sbjct: 209 YTKSIDIWSVGCILAEMLS 227

>pdb|1GOL|A Chain A, Coordinates Of Rat Map Kinase Erk2 With An Arginine Mutation At Position 52 Length = 364

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 16/139 (11%)
Query: 314 SLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
            ++I+     TDL   L+ +   LS         Q+L G+ +++     HRDLK  N+LL
Sbjct: 104 DVYIVQDLMETDLYKLLKTQ--HLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLL 161
Query: 374 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN 433
                NT   L I DFG +    +     ++    E        APE+ L + G      
Sbjct: 162 -----NTTCDLKICDFGLARV--ADPDHDHTGFLTEYVATRWYRAPEIMLNSKG------ 208
Query: 434 YSKS-DAWTAGTVAYEIFG 451
           Y+KS D W+ G +  E+  
Sbjct: 209 YTKSIDIWSVGCILAEMLS 227

>pdb|2ESM|A Chain A, Crystal Structure Of Rock 1 Bound To Fasudil Length = 415

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 13/99 (13%)
Query: 363 HRDLKSDNILLDCSEDNTCPQLVITDFGSSYT-NKSGLSMQYSSADIELGGNVALMAPEV 421
           HRD+K DN+LLD S       L + DFG+    NK G+    ++      G    ++PEV
Sbjct: 196 HRDVKPDNMLLDKS-----GHLKLADFGTCMKMNKEGMVRCDTAV-----GTPDYISPEV 245
Query: 422 ALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSA 460
            L + G   +    + D W+ G   YE+   D PFY  +
Sbjct: 246 -LKSQGGDGYYG-RECDWWSVGVFLYEMLVGDTPFYADS 282

>pdb|3SA0|A Chain A, Complex Of Erk2 With Norathyriol Length = 360

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 16/139 (11%)
Query: 314 SLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
            ++I+     TDL   L+ +   LS         Q+L G+ +++     HRDLK  N+LL
Sbjct: 100 DVYIVQDLMETDLYKLLKTQ--HLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLL 157
Query: 374 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN 433
                NT   L I DFG +    +     ++    E        APE+ L + G      
Sbjct: 158 -----NTTXDLKIXDFGLARV--ADPDHDHTGFLTEYVATRWYRAPEIMLNSKG------ 204
Query: 434 YSKS-DAWTAGTVAYEIFG 451
           Y+KS D W+ G +  E+  
Sbjct: 205 YTKSIDIWSVGCILAEMLS 223

>pdb|1WZY|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Pyrazolopyridazine Derivative Length = 368

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 61/143 (42%), Gaps = 26/143 (18%)
Query: 314 SLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
            ++I+     TDL   L+ +   LS         Q+L G+ +++     HRDLK  N+LL
Sbjct: 108 DVYIVQDLMETDLYKLLKTQ--HLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLL 165
Query: 374 DCSEDNTCPQLVITDFGSSYT-----NKSGLSMQYSSADIELGGNVALMAPEVALATPGL 428
                NT   L I DFG +       + +G   +Y +            APE+ L + G 
Sbjct: 166 -----NTTCDLKICDFGLARVADPDHDHTGFLTEYVATR-------WYRAPEIMLNSKG- 212
Query: 429 FSFVNYSKS-DAWTAGTVAYEIF 450
                Y+KS D W+ G +  E+ 
Sbjct: 213 -----YTKSIDIWSVGCILAEML 230

>pdb|1TVO|A Chain A, The Structure Of Erk2 In Complex With A Small Molecule Inhibitor Length = 368

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 61/143 (42%), Gaps = 26/143 (18%)
Query: 314 SLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
            ++I+     TDL   L+ +   LS         Q+L G+ +++     HRDLK  N+LL
Sbjct: 100 DVYIVQDLMETDLYKLLKTQ--HLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLL 157
Query: 374 DCSEDNTCPQLVITDFGSSYT-----NKSGLSMQYSSADIELGGNVALMAPEVALATPGL 428
                NT   L I DFG +       + +G   +Y +            APE+ L + G 
Sbjct: 158 -----NTTCDLKICDFGLARVADPDHDHTGFLTEYVATR-------WYRAPEIMLNSKG- 204
Query: 429 FSFVNYSKS-DAWTAGTVAYEIF 450
                Y+KS D W+ G +  E+ 
Sbjct: 205 -----YTKSIDIWSVGCILAEML 222

>pdb|3R63|A Chain A, Structure Of Erk2 (Spe) Mutant (S246e) Length = 358

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 61/144 (42%), Gaps = 26/144 (18%)
Query: 314 SLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
            ++I+     TDL   L+ +   LS         Q+L G+ +++     HRDLK  N+LL
Sbjct: 98  DVYIVQDLMETDLYKLLKTQ--HLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLL 155
Query: 374 DCSEDNTCPQLVITDFGSSYT-----NKSGLSMQYSSADIELGGNVALMAPEVALATPGL 428
                NT   L I DFG +       + +G   +Y +            APE+ L + G 
Sbjct: 156 -----NTTCDLKICDFGLARVADPDHDHTGFLTEYVATR-------WYRAPEIMLNSKG- 202
Query: 429 FSFVNYSKS-DAWTAGTVAYEIFG 451
                Y+KS D W+ G +  E+  
Sbjct: 203 -----YTKSIDIWSVGCILAEMLS 221

>pdb|1M7N|A Chain A, Crystal Structure Of Unactivated Apo Insulin-Like Growth Factor-1 Receptor Kinase Domain Length = 322

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 86/205 (41%), Gaps = 41/205 (20%)
Query: 314 SLFILMKKYNTDLRNYLRERCAQL---------SMHERVLLFTQLLEGVTHLNMHRTAHR 364
           +L I+      DL++YLR    ++         S+ + + +  ++ +G+ +LN ++  HR
Sbjct: 103 TLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHR 162
Query: 365 DLKSDNILLDCSEDNTCPQLVITDFG-------SSYTNKSGLSMQYSSADIELGGNVALM 417
           DL + N ++  +ED T   + I DFG       + Y  K G  +            V  M
Sbjct: 163 DLAARNCMV--AEDFT---VKIGDFGMTRDIYETDYYRKGGKGLL----------PVRWM 207
Query: 418 APEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD----YEVNALPQL 473
           +PE      G+F+    + SD W+ G V +EI       YQ   N           L   
Sbjct: 208 SPES--LKDGVFT----TYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDK 261
Query: 474 NTNVPEVMRRLVAKLLENDPSDRPS 498
             N P+++  L+    + +P  RPS
Sbjct: 262 PDNCPDMLFELMRMCWQYNPKMRPS 286

>pdb|4GT4|A Chain A, Structure Of Unliganded, Inactive Ror2 Kinase Domain Length = 308

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 73/160 (45%), Gaps = 26/160 (16%)
Query: 312 NMSLFILMKKYNTDLRNYLRERCAQLSMH--ERVLLFTQLLEGVTHLNMHRTAHRDLKSD 369
           ++  F++M+  ++D+ +   +R  + ++   + V L  Q+  G+ +L+ H   H+DL + 
Sbjct: 115 DLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHHVVHKDLATR 174
Query: 370 NILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD-IELGGN----VALMAPEVALA 424
           N+L             + D  +   +  GL  +  +AD  +L GN    +  MAPE  + 
Sbjct: 175 NVL-------------VYDKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMY 221
Query: 425 TPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD 464
             G FS      SD W+ G V +E+F +    Y    N D
Sbjct: 222 --GKFSI----DSDIWSYGVVLWEVFSYGLQPYCGYSNQD 255

>pdb|3QC4|A Chain A, Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length = 314

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 87/235 (37%), Gaps = 50/235 (21%)
Query: 271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYL 330
           HP  V ++F F D      D  L +  +          Y +N  L   ++K  +      
Sbjct: 94  HPFFVKLYFTFQD------DEKLYFGLS----------YAKNGELLKYIRKIGS-----F 132
Query: 331 RERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG 390
            E C +    E       ++  + +L+     HRDLK +NILL     N    + ITDFG
Sbjct: 133 DETCTRFYTAE-------IVSALEYLHGKGIIHRDLKPENILL-----NEDMHIQITDFG 180
Query: 391 SSYTNKSGLSMQYSSADIE-LGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEI 449
           ++      LS +   A      G    ++PE+        S      SD W  G + Y++
Sbjct: 181 TAKV----LSPESKQARANXFVGTAQYVSPELLTEKSACKS------SDLWALGCIIYQL 230
Query: 450 FGHDNPFYQSARNTDYEVNALPQLNTNVPEVM----RRLVAKLLENDPSDRPSAE 500
                PF   A N       + +L  + P       R LV KLL  D + R   E
Sbjct: 231 VAGLPPF--RAGNEYLIFQKIIKLEYDFPAAFFPKARDLVEKLLVLDATKRLGCE 283

>pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In Complex With An Mk-2461 Analog With Specificity For The Activated Receptor Length = 307

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 79/200 (39%), Gaps = 17/200 (8%)
Query: 315 LFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLD 374
           L +L    + DLRN++R      ++ + +    Q+ +G+ +L   +  HRDL + N +LD
Sbjct: 107 LVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKFVHRDLAARNCMLD 166
Query: 375 CSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY 434
             E  T   + + DFG +          Y      +        P   +A   L +    
Sbjct: 167 --EKFT---VKVADFGLARD-------MYDKEXXSVHNKTGAKLPVKWMALESLQTQKFT 214
Query: 435 SKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEV----MRRLVAKLLE 490
           +KSD W+ G + +E+     P Y      D  V  L       PE     +  ++ K   
Sbjct: 215 TKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWH 274
Query: 491 NDPSDRPS-AELAATVCQLY 509
                RPS +EL + +  ++
Sbjct: 275 PKAEMRPSFSELVSRISAIF 294

>pdb|4DYM|A Chain A, Crystal Structure Of The Acvr1 Kinase Domain In Complex With The Imidazo[1,2-B]pyridazine Inhibitor K00135 Length = 301

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 68/167 (40%), Gaps = 36/167 (21%)
Query: 362 AHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVAL----- 416
           AHRDLKS NIL+  +      Q  I D G +  +        S+  +++G N  +     
Sbjct: 135 AHRDLKSKNILVKKN-----GQCCIADLGLAVMHSQ------STNQLDVGNNPRVGTKRY 183
Query: 417 MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIF----------GHDNPFYQSARNTD-- 464
           MAPEV   T  +  F +Y + D W  G V +E+            +  PFY    N    
Sbjct: 184 MAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPSF 243
Query: 465 ---YEVNALPQLNTNVP-----EVMRRLVAKLLENDPSDRPSAELAA 503
               +V  + Q   N+P     +     +AKL++      PSA L A
Sbjct: 244 EDMRKVVCVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTA 290

>pdb|3QTI|A Chain A, C-Met Kinase In Complex With Nvp-Bvu972 Length = 314

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 83/200 (41%), Gaps = 17/200 (8%)
Query: 315 LFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLD 374
           L +L    + DLRN++R      ++ + +    Q+ +G+  L   +  HRDL + N +LD
Sbjct: 108 LVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLD 167
Query: 375 CSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY 434
             E  T   + + DFG +   +     ++ S   + G  +    P   +A   L +    
Sbjct: 168 --EKFT---VKVADFGLA---RDMYDKEFDSVHNKTGAKL----PVKWMALESLQTQKFT 215
Query: 435 SKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEV----MRRLVAKLLE 490
           +KSD W+ G + +E+     P Y      D  V  L       PE     +  ++ K   
Sbjct: 216 TKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWH 275
Query: 491 NDPSDRPS-AELAATVCQLY 509
                RPS +EL + +  ++
Sbjct: 276 PKAEMRPSFSELVSRISAIF 295

>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase Activity Length = 286

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 70/179 (39%), Gaps = 41/179 (22%)
Query: 337 LSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG------ 390
           L + + V +  Q+  G+ ++      HRDL + NIL+   E+  C    + DFG      
Sbjct: 111 LRLPQLVDMAAQIASGMAYVERMNYVHRDLAAANILV--GENLVCK---VADFGLARLIE 165
Query: 391 -SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEI 449
            + YT + G               +   APE AL   G F+     KSD W+ G +  E+
Sbjct: 166 DNEYTARQGAKF-----------PIKWTAPEAALY--GRFTI----KSDVWSFGILLTEL 208
Query: 450 FGHDNPFYQSARNTD--------YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
                  Y    N +        Y +   P+     PE +  L+ +    DP +RP+ E
Sbjct: 209 TTKGRVPYPGMVNREVLDQVERGYRMPCPPE----CPESLHDLMCQCWRKDPEERPTFE 263

>pdb|3LW0|A Chain A, Igf-1rk In Complex With Ligand Msc1609119a-1 Length = 304

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 85/205 (41%), Gaps = 41/205 (20%)
Query: 314 SLFILMKKYNTDLRNYLRER---------CAQLSMHERVLLFTQLLEGVTHLNMHRTAHR 364
           +L I+      DL++YLR            A  S+ + + +  ++ +G+ +LN ++  HR
Sbjct: 93  TLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHR 152
Query: 365 DLKSDNILLDCSEDNTCPQLVITDFG-------SSYTNKSGLSMQYSSADIELGGNVALM 417
           DL + N ++  +ED T   + I DFG       + Y  K G  +            V  M
Sbjct: 153 DLAARNCMV--AEDFT---VKIGDFGMTRDIYETDYYRKGGKGLL----------PVRWM 197
Query: 418 APEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD----YEVNALPQL 473
           +PE      G+F+    + SD W+ G V +EI       YQ   N           L   
Sbjct: 198 SPES--LKDGVFT----TYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDK 251
Query: 474 NTNVPEVMRRLVAKLLENDPSDRPS 498
             N P+++  L+    + +P  RPS
Sbjct: 252 PDNCPDMLFELMRMCWQYNPKMRPS 276

>pdb|2PUU|A Chain A, Crystal Structure Of P38 Complex With 1-(5-Tert-Butyl-2-P- Tolyl-2h-Pyrazol-3-Yl)-3-[4-(6-Morpholin-4-Ylmethyl- Pyridin-3-Yl)naphthalen-1-Yl]urea Length = 348

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 66/143 (46%), Gaps = 32/143 (22%)
Query: 314 SLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
            ++++      DL N ++  CA+L+      L  Q+L G+ +++     HRDLK  N+ +
Sbjct: 97  DVYLVTHLMGADLNNIVK--CAKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAV 154
Query: 374 --DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVA---LMAPEVALATPGL 428
             DC       +L I DFG +              D E+ G VA     APE+ L     
Sbjct: 155 NEDC-------ELKILDFGLA-----------RHTDDEMTGYVATRWYRAPEIML----- 191
Query: 429 FSFVNYSKS-DAWTAGTVAYEIF 450
            ++++Y+++ D W+ G +  E+ 
Sbjct: 192 -NWMHYNQTVDIWSVGCIMAELL 213

>pdb|3ZZW|A Chain A, Crystal Structure Of The Kinase Domain Of Ror2 Length = 289

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 85/198 (42%), Gaps = 32/198 (16%)
Query: 312 NMSLFILMKKYNTDLRNYLRERCAQLSMH--ERVLLFTQLLEGVTHLNMHRTAHRDLKSD 369
           ++  F++M+  ++D+ +   +R  + ++   + V L  Q+  G+ +L+ H   H+DL + 
Sbjct: 98  DLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHHVVHKDLATR 157
Query: 370 NILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD-IELGGN----VALMAPEVALA 424
           N+L             + D  +   +  GL  +  +AD  +L GN    +  MAPE  + 
Sbjct: 158 NVL-------------VYDKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMY 204
Query: 425 TPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY-----EVNALPQLNTNVPE 479
             G FS      SD W+ G V +E+F +    Y    N D          LP    + P 
Sbjct: 205 --GKFSI----DSDIWSYGVVLWEVFSYGLQPYCGYSNQDVVEMIRNRQVLP-CPDDCPA 257
Query: 480 VMRRLVAKLLENDPSDRP 497
            +  L+ +     PS RP
Sbjct: 258 WVYALMIECWNEFPSRRP 275

>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5) Length = 295

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 61/143 (42%), Gaps = 15/143 (10%)
Query: 323 NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 382
           N  L  +L++   Q ++ + V +   +  G+ +L+     HRDL + NIL+     N+  
Sbjct: 107 NGSLDTFLKKNDGQFTVIQLVGMLRGISAGMKYLSDMGYVHRDLAARNILI-----NSNL 161
Query: 383 QLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY-SKSDAWT 441
              ++DFG S   +      Y++     GG +      +    P   +F  + S SD W+
Sbjct: 162 VCKVSDFGLSRVLEDDPEAAYTTR----GGKIP-----IRWTAPEAIAFRKFTSASDVWS 212
Query: 442 AGTVAYEIFGHDNPFYQSARNTD 464
            G V +E+  +    Y    N D
Sbjct: 213 YGIVMWEVVSYGERPYWEMTNQD 235

>pdb|3A4P|A Chain A, Human C-Met Kinase Domain Complexed With 6-Benzyloxyquinoline Inhibitor Length = 319

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 83/200 (41%), Gaps = 17/200 (8%)
Query: 315 LFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLD 374
           L +L    + DLRN++R      ++ + +    Q+ +G+  L   +  HRDL + N +LD
Sbjct: 113 LVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLD 172
Query: 375 CSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY 434
             E  T   + + DFG +   +     ++ S   + G  +    P   +A   L +    
Sbjct: 173 --EKFT---VKVADFGLA---RDMYDKEFDSVHNKTGAKL----PVKWMALESLQTQKFT 220
Query: 435 SKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEV----MRRLVAKLLE 490
           +KSD W+ G + +E+     P Y      D  V  L       PE     +  ++ K   
Sbjct: 221 TKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWH 280
Query: 491 NDPSDRPS-AELAATVCQLY 509
                RPS +EL + +  ++
Sbjct: 281 PKAEMRPSFSELVSRISAIF 300

>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor Discovered Through Site-Directed Dynamic Tethering Length = 272

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 66/152 (43%), Gaps = 20/152 (13%)
Query: 347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSA 406
           T+L   +++ +  R  HRD+K +N+LL      +  +L I DFG S    S      S  
Sbjct: 119 TELANALSYCHSKRVIHRDIKPENLLL-----GSNGELKIADFGWSVHAPS------SRR 167
Query: 407 DIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE 466
           D  L G +  + PE+      +   ++  K D W+ G + YE      PF        Y 
Sbjct: 168 DT-LCGTLDYLPPEM------IEGRMHDEKVDLWSLGVLCYEFLVGMPPFEAHTYQETYR 220
Query: 467 VNALPQLN--TNVPEVMRRLVAKLLENDPSDR 496
             +  +      V E  R L+++LL+++ S R
Sbjct: 221 RISRVEFTFPDFVTEGARDLISRLLKHNASQR 252

>pdb|3MTF|A Chain A, Crystal Structure Of The Acvr1 Kinase In Complex With A 2- Aminopyridine Inhibitor Length = 301

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 68/167 (40%), Gaps = 36/167 (21%)
Query: 362 AHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVAL----- 416
           AHRDLKS NIL+  +      Q  I D G +  +        S+  +++G N  +     
Sbjct: 135 AHRDLKSKNILVKKN-----GQCCIADLGLAVMHSQ------STNQLDVGNNPRVGTKRY 183
Query: 417 MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIF----------GHDNPFYQSARNTD-- 464
           MAPEV   T  +  F +Y + D W  G V +E+            +  PFY    N    
Sbjct: 184 MAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPSF 243
Query: 465 ---YEVNALPQLNTNVP-----EVMRRLVAKLLENDPSDRPSAELAA 503
               +V  + Q   N+P     +     +AKL++      PSA L A
Sbjct: 244 EDMRKVVCVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTA 290

>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs Length = 286

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 69/172 (40%), Gaps = 27/172 (15%)
Query: 337 LSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNK 396
           L + + V +  Q+  G+ ++      HRDL++ NIL+   E+  C    + DFG +   +
Sbjct: 111 LRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILV--GENLVCK---VADFGLARLIE 165
Query: 397 SGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPF 456
                    A       +   APE AL   G F+     KSD W+ G +  E+       
Sbjct: 166 DNEXTARQGAKF----PIKWTAPEAALY--GRFTI----KSDVWSFGILLTELTTKGRVP 215
Query: 457 YQSARNTD--------YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
           Y    N +        Y +   P+     PE +  L+ +    DP +RP+ E
Sbjct: 216 YPGMVNREVLDQVERGYRMPCPPE----CPESLHDLMCQCWRKDPEERPTFE 263

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	588
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	2e-30
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	3e-29
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	9e-29
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	6e-26
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	7e-26
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	1e-25
2a19_B	284	Interferon-induced, double-stranded RNA-activated	1e-24
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	1e-24
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	7e-24
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	8e-24
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	2e-23
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	1e-22
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	2e-22
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	4e-22
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	5e-22
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	2e-21
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	2e-21
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	3e-21
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	4e-21
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	4e-21
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	1e-20
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	2e-20
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	2e-20
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	3e-20
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	1e-19
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	2e-19
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	4e-19
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	5e-19
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	5e-19
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	8e-19
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	8e-19
3q4u_A	301	Activin receptor type-1; structural genomics conso	2e-18
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	3e-18
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	4e-18
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	9e-18
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	1e-17
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	2e-17
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	2e-17
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	3e-17
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	4e-17
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	4e-17
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	7e-17
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	2e-16
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	2e-16
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	2e-16
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	2e-16
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	2e-16
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	3e-16
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	3e-16
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	4e-16
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	4e-16
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	4e-16
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	5e-16
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	5e-16
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	5e-16
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	5e-16
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	6e-16
3soc_A	322	Activin receptor type-2A; structural genomics cons	7e-16
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	7e-16
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	7e-16
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	1e-15
3bhy_A	283	Death-associated protein kinase 3; death associate	1e-15
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	2e-15
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	4e-15
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	4e-15
3ork_A	311	Serine/threonine protein kinase; structural genomi	5e-15
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	6e-15
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	6e-15
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	7e-15
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	7e-15
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	7e-15
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	1e-14
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	2e-14
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	2e-14
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	3e-14
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	3e-14
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	3e-14
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	3e-14
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	3e-14
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	3e-14
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	4e-14
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	7e-14
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	8e-14
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	9e-14
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	1e-13
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	2e-13
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	2e-13
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	2e-13
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	5e-13
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	5e-13
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	6e-13
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	6e-13
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	7e-13
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	9e-13
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	1e-12
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	1e-12
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	1e-12
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	1e-12
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	2e-12
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	2e-12
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	2e-12
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	2e-12
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	2e-12
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	3e-12
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	4e-12
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	5e-12
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	5e-12
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	6e-12
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	6e-12
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	8e-12
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	1e-11
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	1e-11
3pls_A	298	Macrophage-stimulating protein receptor; protein k	1e-11
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	1e-11
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	2e-11
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	2e-11
3niz_A	311	Rhodanese family protein; structural genomics, str	2e-11
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	2e-11
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	2e-11
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	2e-11
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	3e-11
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	3e-11
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	3e-11
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	3e-11
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	4e-11
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	4e-11
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	4e-11
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	5e-11
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	5e-11
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	6e-11
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	7e-11
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	7e-11
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	8e-11
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	9e-11
3o0g_A	292	Cell division protein kinase 5; kinase activator c	9e-11
3an0_A	340	Dual specificity mitogen-activated protein kinase;	1e-10
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	1e-10
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	1e-10
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	1e-10
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	2e-10
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	2e-10
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	2e-10
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	3e-10
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	3e-10
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	3e-10
2dyl_A	318	Dual specificity mitogen-activated protein kinase	3e-10
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	3e-10
3fme_A	290	Dual specificity mitogen-activated protein kinase;	4e-10
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	4e-10
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	5e-10
3aln_A	327	Dual specificity mitogen-activated protein kinase;	5e-10
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	6e-10
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	7e-10
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	7e-10
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	8e-10
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	1e-09
3g51_A	325	Ribosomal protein S6 kinase alpha-3; N-terminal ki	1e-09
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	1e-09
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	2e-09
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	2e-09
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	2e-09
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	2e-09
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	3e-09
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	3e-09
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	3e-09
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	3e-09
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	3e-09
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	4e-09
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	4e-09
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	4e-09
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	4e-09
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	5e-09
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	6e-09
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	7e-09
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	9e-09
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	1e-08
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	1e-08
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	2e-08
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	2e-08
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	2e-08
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	3e-08
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	3e-08
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	3e-08
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	4e-08
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	4e-08
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	4e-08
3uqc_A	286	Probable conserved transmembrane protein; structur	5e-08
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	5e-08
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	5e-08
4aoj_A	329	High affinity nerve growth factor receptor; transf	5e-08
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	5e-08
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	6e-08
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	7e-08
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	7e-08
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	7e-08
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	9e-08
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	9e-08
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	2e-07
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	2e-07
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	4e-07
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	4e-07
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	4e-07
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	4e-07
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	5e-07
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	6e-07
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	7e-07
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	8e-07
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	1e-06
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	1e-06
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	2e-06
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	2e-06
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	3e-06
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	3e-06
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	3e-06
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	4e-06
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	4e-06
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	4e-06
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	4e-06
3rp9_A	458	Mitogen-activated protein kinase; structural genom	1e-05
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	1e-05
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	3e-05
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	4e-05
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	7e-05
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	8e-05
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	2e-04

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score =  122 bits (306), Expect = 2e-30
 Identities = 47/323 (14%), Positives = 94/323 (29%), Gaps = 56/323 (17%)

Query: 197 DIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPL 254
            +++ + +  G  +VV+         ++ALK+      A NS + L+ + +      + L
Sbjct: 63  KLKLVEPLRVGDRSVVFLVRDVERLEDFALKVF--TMGAENSRSELERLHEATFAAARLL 120

Query: 255 RLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMS 314
                             +           +PS  D+  +      A+L+P        +
Sbjct: 121 ----------------GESPEEARDRRRLLLPS--DAVAVQSQPPFAQLSPGQDDYAVAN 162

Query: 315 LFILMKKYNTDLRNYLR------ERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKS 368
             +LM   + DL                  +    +L  QL+    +L      H     
Sbjct: 163 YLLLMPAASVDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQSKGLVHGHFTP 222

Query: 369 DNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGL 428
           DN+ +    D    +L++ D  + +   +                V     E   A+   
Sbjct: 223 DNLFIM--PDG---RLMLGDVSALWKVGTRGP--------ASSVPVTYAPREFLNASTAT 269

Query: 429 FSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLN-----------TNV 477
           F+       +AW  G   Y ++    PF                             T +
Sbjct: 270 FTH----ALNAWQLGLSIYRVWCLFLPFGLVTPGIKGSWKRPSLRVPGTDSLAFGSCTPL 325

Query: 478 PEVMRRLVAKLLENDPSDRPSAE 500
           P+ ++ L+ + L  D   R    
Sbjct: 326 PDFVKTLIGRFLNFDRRRRLLPL 348

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score =  119 bits (299), Expect = 3e-29
 Identities = 58/380 (15%), Positives = 111/380 (29%), Gaps = 47/380 (12%)

Query: 139 SKPFLAFVGVSLASGTGILTKEDEFEGVCWEIRHAVNNMFDKLVQVETLPDVDDVKVD-- 196
           +  F  F G                +         + +  D LV           +V+  
Sbjct: 13  NLYFQGFRGTDPGDVVIEELFNRIPQANVRTTSEYMQSAADSLVSTSLWNTGQPFRVESE 72

Query: 197 ------DIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELL 248
                  +  G  + +       EAT +  G  + + +   Y         +K M +E+L
Sbjct: 73  LGERPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVP--YFTERPPSNAIKQMKEEVL 130

Query: 249 PLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGG 308
            LR    +                  V + F F   +   P    +       R+     
Sbjct: 131 RLRLLRGIKN-----------QKQAKVHLRFIFPFDLVKDPQKKKMI------RVRLDER 173

Query: 309 YGRNMSLFILMKKYNTDLRNYLRE------RCAQLSMHERVLLFTQLLEGVTHLNMHRTA 362
               +S F L  +  ++L+ +             L  H R+ L  Q++  +  L+ +   
Sbjct: 174 DMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLV 233

Query: 363 HRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVA 422
           H  L+  +I+LD  +      + +T F     + +                    A  + 
Sbjct: 234 HTYLRPVDIVLD--QRG---GVFLTGFEHLVRDGASAVSPIGRGF----APPETTAERML 284

Query: 423 LATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMR 482
                  + + ++  D WT G   Y I+  D P              + +   N+P+ +R
Sbjct: 285 PFGQHHPTLMTFA-FDTWTLGLAIYWIWCADLPNT--DDAALGGSEWIFRSCKNIPQPVR 341

Query: 483 RLVAKLLENDPSDRPSAELA 502
            L+   L     DR     A
Sbjct: 342 ALLEGFLRYPKEDRLLPLQA 361

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score =  117 bits (293), Expect = 9e-29
 Identities = 62/344 (18%), Positives = 115/344 (33%), Gaps = 58/344 (16%)

Query: 179 DKLVQVETLPDVDDVKVD--------DIQIGKFIAKGTNAVVYEATFR--GVEYALKMMF 228
           D LV           +V+         +  G  + +       EAT +  G  + + +  
Sbjct: 48  DSLVSTSLWNTGQPFRVESELGERPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVP- 106

Query: 229 NYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSI 288
            Y         +K M +E+L LR         L+  ++N       V + F F   +   
Sbjct: 107 -YFTERPPSNAIKQMKEEVLRLR---------LLRGIKN--QKQAKVHLRFIFPFDLVKD 154

Query: 289 PDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRE------RCAQLSMHER 342
           P    +       R+         +S F L  +  ++L+ +             L  H R
Sbjct: 155 PQKKKMI------RVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHAR 208

Query: 343 VLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQ 402
           + L  Q++  +  L+ +   H  L+  +I+LD  +      + +T F     + + +   
Sbjct: 209 LQLTLQVIRLLASLHHYGLVHTYLRPVDIVLD--QRG---GVFLTGFEHLVRDGARVVSS 263

Query: 403 YSSADIELGGNVALMAPEVALATPGLFSFVNYSKS------DAWTAGTVAYEIFGHDNPF 456
                     +     PE+  A     S+    ++      DAW  G V Y I+  D P 
Sbjct: 264 ---------VSRGFEPPEL-EARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCADLPI 313

Query: 457 YQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
            + A     E   + +   N+P+ +R L+   L     DR    
Sbjct: 314 TKDAALGGSE--WIFRSCKNIPQPVRALLEGFLRYPKEDRLLPL 355

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score =  107 bits (269), Expect = 6e-26
 Identities = 66/325 (20%), Positives = 119/325 (36%), Gaps = 71/325 (21%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKP 253
            D +    + +G    V +A        YA+K +  ++    S                 
Sbjct: 6   SDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKI-RHTEEKLSTI--------------- 49

Query: 254 LRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNM 313
             L+E ML+ S+     H  VV  + A+ +    +   + +   +               
Sbjct: 50  --LSEVMLLASLN----HQYVVRYYAAWLERRNFVKPMTAVKKKS--------------- 88

Query: 314 SLFILMKKY--NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNI 371
           +LFI M+ Y  N  L + +          E   LF Q+LE +++++     HRDLK  NI
Sbjct: 89  TLFIQME-YCENGTLYDLIHSENLNQQRDEYWRLFRQILEALSYIHSQGIIHRDLKPMNI 147

Query: 372 LLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVAL---------MAPEVA 422
            +D  E      + I DFG +      L +    +    G +  L         +A EV 
Sbjct: 148 FID--ESR---NVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVL 202

Query: 423 LATPGLFSFVNY-SKSDAWTAGTVAYEI----FGHDNPF--YQSARNTDYEVNALPQLNT 475
             T       +Y  K D ++ G + +E+              +  R+   E    P  + 
Sbjct: 203 DGTG------HYNEKIDMYSLGIIFFEMIYPFSTGMERVNILKKLRSVSIEFP--PDFDD 254

Query: 476 NVPEVMRRLVAKLLENDPSDRPSAE 500
           N  +V ++++  L+++DP+ RP A 
Sbjct: 255 NKMKVEKKIIRLLIDHDPNKRPGAR 279

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score =  107 bits (268), Expect = 7e-26
 Identities = 64/328 (19%), Positives = 105/328 (32%), Gaps = 80/328 (24%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKP 253
            D +  + + +G   VV+EA  +     YA+K +            L          R+ 
Sbjct: 5   TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRI-----------RLPNRELA----REK 49

Query: 254 LRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNM 313
           + + E   +  +E    HP +V    A+ +   +                         +
Sbjct: 50  V-MREVKALAKLE----HPGIVRYFNAWLEKNTTEKLQP----------------SSPKV 88

Query: 314 SLFILMKKY--NTDLRNYLRERCAQLSMHERVLL--FTQLLEGVTHLNMHRTAHRDLKSD 369
            L+I M+      +L++++  RC        V L  F Q+ E V  L+     HRDLK  
Sbjct: 89  YLYIQMQ-LCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHSKGLMHRDLKPS 147

Query: 370 NILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVAL-------MAPEVA 422
           NI      D+    + + DFG           Q     +               M+PE  
Sbjct: 148 NIFFT--MDD---VVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQI 202

Query: 423 LATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPF---------YQSARNTDYEVNALPQ 472
                      YS K D ++ G + +E+     PF             RN  +     P 
Sbjct: 203 HGNS-------YSHKVDIFSLGLILFELL---YPFSTQMERVRTLTDVRNLKF-----PP 247

Query: 473 LNTNVPEVMRRLVAKLLENDPSDRPSAE 500
           L T        +V  +L   P +RP A 
Sbjct: 248 LFTQKYPCEYVMVQDMLSPSPMERPEAI 275

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score =  108 bits (272), Expect = 1e-25
 Identities = 62/329 (18%), Positives = 105/329 (31%), Gaps = 74/329 (22%)

Query: 188 PDVDDVKVDDIQIGKF-------IAKGTNA-VVYEATFRGVEYALKMMFNYSAASNSHAI 239
            D  D +   + +GK        +  G    +VY   F   + A+K +            
Sbjct: 9   QDDGDEETSVVIVGKISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRI--------LPEC 60

Query: 240 LKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSAL 299
                +E+  LR+                  HPNV+       D                
Sbjct: 61  FSFADREVQLLRE---------------SDEHPNVIRYFCTEKD---------------- 89

Query: 300 PARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMH 359
                           +I ++     L+ Y+ ++       E + L  Q   G+ HL+  
Sbjct: 90  ------------RQFQYIAIELCAATLQEYVEQKDFAHLGLEPITLLQQTTSGLAHLHSL 137

Query: 360 RTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAP 419
              HRDLK  NIL+     +   + +I+DFG       G       + +   G    +AP
Sbjct: 138 NIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRSGV--PGTEGWIAP 195

Query: 420 EVALATPGLFSFVNYSKS-DAWTAGTVAYEI-------FGHDNPFYQSARNTDYEVNALP 471
           E+           N + + D ++AG V Y +       FG       +       ++ L 
Sbjct: 196 EMLSEDCK----ENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQANILLGACSLDCLH 251

Query: 472 QLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
                     R L+ K++  DP  RPSA+
Sbjct: 252 PEKHEDVIA-RELIEKMIAMDPQKRPSAK 279

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score =  103 bits (258), Expect = 1e-24
 Identities = 63/324 (19%), Positives = 112/324 (34%), Gaps = 78/324 (24%)

Query: 190 VDDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKEL 247
           VD     D +  + I  G    V++A  R  G  Y +K +         +   KA  +E+
Sbjct: 5   VDKRFGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRV--------KYNNEKAE-REV 55

Query: 248 LPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTG 307
             L K   L+             H N+V  +  +  F               P   +   
Sbjct: 56  KALAK---LD-------------HVNIVHYNGCWDGF------------DYDPETSSKNS 87

Query: 308 GYGRNMSLFILMKKY--NTDLRNYLRERCAQLSMHERVL-LFTQLLEGVTHLNMHRTAHR 364
              +   LFI M+ +     L  ++ +R  +       L LF Q+ +GV +++  +  +R
Sbjct: 88  SRSKTKCLFIQME-FCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLINR 146

Query: 365 DLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQ-------YSSADIELGGNVALM 417
           DLK  NI L   +     Q+ I DFG   + K+            Y             M
Sbjct: 147 DLKPSNIFLV--DTK---QVKIGDFGLVTSLKNDGKRTRSKGTLRY-------------M 188

Query: 418 APEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTN 476
           +PE   +         Y  + D +  G +  E+    +  ++   +  +       ++  
Sbjct: 189 SPEQISSQD-------YGKEVDLYALGLILAELLHVCDTAFE--TSKFFTDLRDGIISDI 239

Query: 477 VPEVMRRLVAKLLENDPSDRPSAE 500
             +  + L+ KLL   P DRP+  
Sbjct: 240 FDKKEKTLLQKLLSKKPEDRPNTS 263

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score =  103 bits (259), Expect = 1e-24
 Identities = 65/341 (19%), Positives = 109/341 (31%), Gaps = 61/341 (17%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKP 253
            D +  + + +G   VV+EA  +     YA+K +       N     + + +E+  L K 
Sbjct: 6   TDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRI----RLPNRELAREKVMREVKALAKL 61

Query: 254 LRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSS-------------LIYPSALP 300
                    N+    PP      M   +     +    S              + P +  
Sbjct: 62  EHPGIVRYFNAWLETPPEKWQEEMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTK 121

Query: 301 ARLNPTGGYGRNMSLFILMKKY--NTDLRNYLRERCAQLSMHERVLL--FTQLLEGVTHL 356
             +         + L+I M+      +L++++  RC+       V L  F Q+ E V  L
Sbjct: 122 NTVGQLQPSSPKVYLYIQMQ-LCRKENLKDWMNRRCSLEDREHGVCLHIFIQIAEAVEFL 180

Query: 357 NMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVAL 416
           +     HRDLK  NI      D+    + + DFG           Q     +        
Sbjct: 181 HSKGLMHRDLKPSNIFFT--MDD---VVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTG 235

Query: 417 -------MAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPF---------YQS 459
                  M+PE             YS K D ++ G + +E+      F            
Sbjct: 236 QVGTKLYMSPEQIHGNN-------YSHKVDIFSLGLILFELL---YSFSTQMERVRIITD 285

Query: 460 ARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
            RN  +     P L T        +V  +L   P++RP A 
Sbjct: 286 VRNLKF-----PLLFTQKYPQEHMMVQDMLSPSPTERPEAT 321

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score =  100 bits (252), Expect = 7e-24
 Identities = 59/329 (17%), Positives = 105/329 (31%), Gaps = 91/329 (27%)

Query: 193 VKVDDIQIGKFIAKGTNAVVYEATF--RGVEYALKMMF--NYSAASNSHAILKAMSKELL 248
           +  ++I+  K I KG   +V++          A+K +   +    +      +   +E+ 
Sbjct: 16  LADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVF 75

Query: 249 PLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAF-----------TDFVPSIPDSSLIYPS 297
            +   L                HPN+V                  +FVP           
Sbjct: 76  IMSN-LN---------------HPNIV----KLYGLMHNPPRMVMEFVP----------- 104

Query: 298 ALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLN 357
                     G                DL + L ++   +    ++ L   +  G+ ++ 
Sbjct: 105 ---------CG----------------DLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQ 139

Query: 358 MHRTA--HRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVA 415
                  HRDL+S NI L   ++N      + DFG      S  S+   S  +   GN  
Sbjct: 140 NQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGL-----SQQSVHSVSGLL---GNFQ 191

Query: 416 LMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPF-----YQSARNTDYEVNAL 470
            MAPE   A    ++     K+D ++   + Y I   + PF      +           L
Sbjct: 192 WMAPETIGAEEESYT----EKADTYSFAMILYTILTGEGPFDEYSYGKIKFINMIREEGL 247

Query: 471 -PQLNTNVPEVMRRLVAKLLENDPSDRPS 498
            P +  + P  +R ++      DP  RP 
Sbjct: 248 RPTIPEDCPPRLRNVIELCWSGDPKKRPH 276

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score =  101 bits (253), Expect = 8e-24
 Identities = 66/314 (21%), Positives = 125/314 (39%), Gaps = 60/314 (19%)

Query: 192 DVKVDDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLR 251
           D+  + ++IG+ I KG    VY   + G E A++++       ++   LKA  +E++  R
Sbjct: 29  DIPFEQLEIGELIGKGRFGQVYHGRWHG-EVAIRLI---DIERDNEDQLKAFKREVMAYR 84

Query: 252 KPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGR 311
           +  R               H NVV     F     S P  ++I                 
Sbjct: 85  Q-TR---------------HENVV----LFMGACMSPPHLAII----------------- 107

Query: 312 NMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNI 371
             SL    K     L + +R+    L +++   +  ++++G+ +L+     H+DLKS N+
Sbjct: 108 -TSL---CK--GRTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYLHAKGILHKDLKSKNV 161

Query: 372 LLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEV--ALATPGLF 429
             D   +      VITDFG    +    + +         G +  +APE+   L+     
Sbjct: 162 FYD---NGKV---VITDFGLFSISGVLQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEE 215

Query: 430 SFVNYS-KSDAWTAGTVAYEIFGHDNPFY-QSARNTDYEV--NALPQL-NTNVPEVMRRL 484
             + +S  SD +  GT+ YE+   + PF  Q A    +++     P L    + + +  +
Sbjct: 216 DKLPFSKHSDVFALGTIWYELHAREWPFKTQPAEAIIWQMGTGMKPNLSQIGMGKEISDI 275

Query: 485 VAKLLENDPSDRPS 498
           +      +  +RP+
Sbjct: 276 LLFCWAFEQEERPT 289

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 99.7 bits (249), Expect = 2e-23
 Identities = 73/317 (23%), Positives = 128/317 (40%), Gaps = 71/317 (22%)

Query: 192 DVKVDDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLR 251
           ++    I +G+ I  G+   VY+  + G + A+KM+   +  + +   L+A   E+  LR
Sbjct: 20  EIPDGQITVGQRIGSGSFGTVYKGKWHG-DVAVKML---NVTAPTPQQLQAFKNEVGVLR 75

Query: 252 KPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGR 311
           K  R               H N+++     T      P  +++                 
Sbjct: 76  K-TR---------------HVNILLFMGYSTA-----PQLAIV----------------- 97

Query: 312 NMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNI 371
                   +  +  L ++L     +  M + + +  Q   G+ +L+     HRDLKS+NI
Sbjct: 98  -TQW---CEGSS--LYHHLHASETKFEMKKLIDIARQTARGMDYLHAKSIIHRDLKSNNI 151

Query: 372 LLDCSEDNTCPQLVITDFG-SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGL-F 429
            L   EDNT     I DFG ++  ++   S Q+        G++  MAPEV        +
Sbjct: 152 FLH--EDNTV---KIGDFGLATEKSRWSGSHQFEQL----SGSILWMAPEVIRMQDSNPY 202

Query: 430 SFVNYSKSDAWTAGTVAYEI------FGHDNPFYQ--SARNTDYEVNALPQLNTNVPEVM 481
           SF    +SD +  G V YE+      + + N   Q             L ++ +N P+ M
Sbjct: 203 SF----QSDVYAFGIVLYELMTGQLPYSNINNRDQIIEMVGRGSLSPDLSKVRSNCPKRM 258

Query: 482 RRLVAKLLENDPSDRPS 498
           +RL+A+ L+    +RPS
Sbjct: 259 KRLMAECLKKKRDERPS 275

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 99.5 bits (248), Expect = 2e-22
 Identities = 68/343 (19%), Positives = 131/343 (38%), Gaps = 78/343 (22%)

Query: 183 QVETLPDVDDVKVDDIQIGKFIAKGTNA-VVYEATFRGVEYALKMMFNYSAASNSHAILK 241
           ++  +P+ +    + +   K +  G++  VV++ +F+G   A+K             +L 
Sbjct: 2   RIANIPNFEQSLKNLVVSEKILGYGSSGTVVFQGSFQGRPVAVKR------------MLI 49

Query: 242 AMSKELLPLRKPLRLNE-DMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALP 300
                 L         E  +L  S +    HPNV+  + + T                  
Sbjct: 50  DFCDIAL--------MEIKLLTESDD----HPNVIRYYCSETT----------------- 80

Query: 301 ARLNPTGGYGRNMSLFILMKKYNTDL------RNYLRERCAQLSMHERVLLFTQLLEGVT 354
                      +  L+I ++  N +L      +N   E       +  + L  Q+  GV 
Sbjct: 81  -----------DRFLYIALELCNLNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVA 129

Query: 355 HLNMHRTAHRDLKSDNILLDCSEDNTCP--------QLVITDFGSSYTNKSGLSMQYSSA 406
           HL+  +  HRDLK  NIL+  S   T          +++I+DFG      SG S   ++ 
Sbjct: 130 HLHSLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDSGQSSFRTNL 189

Query: 407 DIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEI-------FGHDNPFYQ 458
           +    G     APE+   +  L +    ++S D ++ G V Y I       FG       
Sbjct: 190 N-NPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYSRES 248

Query: 459 SARNTDYEVNALPQLN-TNVPEVMRRLVAKLLENDPSDRPSAE 500
           +     + ++ +  L+  ++      L+++++++DP  RP+A 
Sbjct: 249 NIIRGIFSLDEMKCLHDRSLIAEATDLISQMIDHDPLKRPTAM 291

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 96.2 bits (240), Expect = 4e-22
 Identities = 69/333 (20%), Positives = 124/333 (37%), Gaps = 80/333 (24%)

Query: 180 KLVQVETLPDVDDVKVD--DIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSH 237
           + +  +   D DD+ +   D+ I + I  G+   V+ A + G + A+K++          
Sbjct: 19  ENLYFQGAMDGDDMDIPWCDLNIKEKIGAGSFGTVHRAEWHGSDVAVKILME---QDFHA 75

Query: 238 AILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLI--Y 295
             +    +E+  +++ LR               HPN+V     F   V   P+ S++  Y
Sbjct: 76  ERVNEFLREVAIMKR-LR---------------HPNIV----LFMGAVTQPPNLSIVTEY 115

Query: 296 PSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCA--QLSMHERVLLFTQLLEGV 353
                            +S           L   L +  A  QL    R+ +   + +G+
Sbjct: 116 -----------------LS--------RGSLYRLLHKSGAREQLDERRRLSMAYDVAKGM 150

Query: 354 THLNMHRTA--HRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELG 411
            +L+       HR+LKS N+L+D  +  T     + DFG S    S      S+A     
Sbjct: 151 NYLHNRNPPIVHRNLKSPNLLVD--KKYTV---KVCDFGLSRLKASTFLSSKSAA----- 200

Query: 412 GNVALMAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPF-----YQSARNTDY 465
           G    MAPEV    P        + KSD ++ G + +E+     P+      Q      +
Sbjct: 201 GTPEWMAPEVLRDEP-------SNEKSDVYSFGVILWELATLQQPWGNLNPAQVVAAVGF 253

Query: 466 EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS 498
           +     ++  N+   +  ++     N+P  RPS
Sbjct: 254 K-CKRLEIPRNLNPQVAAIIEGCWTNEPWKRPS 285

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 96.7 bits (241), Expect = 5e-22
 Identities = 72/335 (21%), Positives = 123/335 (36%), Gaps = 82/335 (24%)

Query: 198 IQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLR 255
           +++ + +A+G  A VYEA     G EYALK +      SN     +A+ +E+  ++K   
Sbjct: 30  LRVRRVLAEGGFAFVYEAQDVGSGREYALKRLL-----SNEEEKNRAIIQEVCFMKK--- 81

Query: 256 LNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSL 315
                       L  HPN+V                     +++    + TG        
Sbjct: 82  ------------LSGHPNIV----------------QFCSAASIGKEESDTGQA----EF 109

Query: 316 FILMKKYNTDLRNYLRERCAQLSMHERVLL--FTQLLEGVTHLNMHRT----AHRDLKSD 369
            +L +     L  +L++  ++  +    +L  F Q    V H  MHR      HRDLK +
Sbjct: 110 LLLTELCKGQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQH--MHRQKPPIIHRDLKVE 167

Query: 370 NILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVAL-------MAPEVA 422
           N+LL      T   + + DFGS+ T        +S+    L               PE  
Sbjct: 168 NLLLS--NQGT---IKLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPE-- 220

Query: 423 LATPGLFSFVNY----SKSDAWTAGTVAYEIFGHDNPFYQSAR----NTDYEVNALPQLN 474
                +    +      K D W  G + Y +    +PF   A+    N  Y    +P  +
Sbjct: 221 -----IIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKLRIVNGKYS---IPP-H 271

Query: 475 TNVPEVMRRLVAKLLENDPSDRPSA-ELAATVCQL 508
                V   L+  +L+ +P +R S  E+   + ++
Sbjct: 272 DTQYTVFHSLIRAMLQVNPEERLSIAEVVHQLQEI 306

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 95.3 bits (237), Expect = 2e-21
 Identities = 58/335 (17%), Positives = 105/335 (31%), Gaps = 64/335 (19%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKP 253
               +   I +G+  VV  A         A+K+            + K   +++ P    
Sbjct: 26  KKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKI------------MNKNKIRQINPKDVE 73

Query: 254 LRLNEDMLMNSVENLPPHPNVVVMHFAFTD----------------F---VPSIPDSSLI 294
               E  LM  +     HPN+  ++  + D                       I DS+  
Sbjct: 74  RIKTEVRLMKKLH----HPNIARLYEVYEDEQYICLVMELCHGGHLLDKLNVFIDDSTGK 129

Query: 295 YPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVT 354
               +              ++   +  +   L    RE+           +  Q+   + 
Sbjct: 130 CAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISN-------IMRQIFSALH 182

Query: 355 HLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNV 414
           +L+     HRD+K +N L   ++     ++ + DFG S       + +Y        G  
Sbjct: 183 YLHNQGICHRDIKPENFLFSTNKSF---EIKLVDFGLSKEFYKLNNGEYYGMT-TKAGTP 238

Query: 415 ALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEI------FGHDNPF--YQSARNTDY 465
             +APEV   T       +Y    DAW+AG + + +      F   N         N   
Sbjct: 239 YFVAPEVLNTTNE-----SYGPKCDAWSAGVLLHLLLMGAVPFPGVNDADTISQVLNKKL 293

Query: 466 EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
                P  N  +  + R L++ LL  +  +R  A 
Sbjct: 294 CFEN-PNYN-VLSPLARDLLSNLLNRNVDERFDAM 326

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 94.3 bits (235), Expect = 2e-21
 Identities = 68/322 (21%), Positives = 118/322 (36%), Gaps = 92/322 (28%)

Query: 193 VKVDDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRK 252
           +   +I++ + + +G   VV +A +R  + A+K +        S +  KA   EL  L +
Sbjct: 5   IDYKEIEVEEVVGRGAFGVVCKAKWRAKDVAIKQI-------ESESERKAFIVELRQLSR 57

Query: 253 PLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRN 312
            +                HPN+V ++ A  +                             
Sbjct: 58  -VN---------------HPNIVKLYGACLN----------------------------- 72

Query: 313 MSLFILMKKY--NTDLRNYLR--ERCAQLSMHERVLLFTQLLEGVTHLNMHRTA-----H 363
             + ++M+ Y     L N L   E     +    +    Q  +GV +L  H        H
Sbjct: 73  -PVCLVME-YAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYL--HSMQPKALIH 128

Query: 364 RDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVAL 423
           RDLK  N+LL      T  +  I DFG++   ++ ++           G+ A MAPEV  
Sbjct: 129 RDLKPPNLLLV--AGGTVLK--ICDFGTACDIQTHMTNN--------KGSAAWMAPEVFE 176

Query: 424 ATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNAL------PQLNTN 476
            +        YS K D ++ G + +E+     P +       + +         P L  N
Sbjct: 177 GSN-------YSEKCDVFSWGIILWEVITRRKP-FDEIGGPAFRIMWAVHNGTRPPLIKN 228

Query: 477 VPEVMRRLVAKLLENDPSDRPS 498
           +P+ +  L+ +    DPS RPS
Sbjct: 229 LPKPIESLMTRCWSKDPSQRPS 250

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 92.7 bits (231), Expect = 3e-21
 Identities = 68/321 (21%), Positives = 110/321 (34%), Gaps = 77/321 (23%)

Query: 192 DVKVDDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLR 251
           ++   ++ + + I  G    VY A + G E A+K    +    +    ++ + +E     
Sbjct: 3   EIDFAELTLEEIIGIGGFGKVYRAFWIGDEVAVKA-ARHDPDEDISQTIENVRQEAKLFA 61

Query: 252 KPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLI--YPSALPARLNPTGGY 309
             L+               HPN++    A        P+  L+  +           GG 
Sbjct: 62  M-LK---------------HPNII----ALRGVCLKEPNLCLVMEFAR---------GG- 91

Query: 310 GRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTA---HRDL 366
                           L   L  +  ++     V    Q+  G+ +L+        HRDL
Sbjct: 92  ---------------PLNRVLSGK--RIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDL 134

Query: 367 KSDNILLDCSEDNTCPQLV---ITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVAL 423
           KS NIL+    +N         ITDFG +        M  S+A     G  A MAPEV  
Sbjct: 135 KSSNILILQKVENGDLSNKILKITDFGLAREWHRTTKM--SAA-----GAYAWMAPEVIR 187

Query: 424 ATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPF-----YQSARNTDYEVNALPQLNTNV 477
           A+        +S  SD W+ G + +E+   + PF        A            + +  
Sbjct: 188 ASM-------FSKGSDVWSYGVLLWELLTGEVPFRGIDGLAVAYGVAMN-KLALPIPSTC 239

Query: 478 PEVMRRLVAKLLENDPSDRPS 498
           PE   +L+      DP  RPS
Sbjct: 240 PEPFAKLMEDCWNPDPHSRPS 260

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 93.6 bits (233), Expect = 4e-21
 Identities = 64/325 (19%), Positives = 102/325 (31%), Gaps = 87/325 (26%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKP 253
            D+  G+ + KG      + T R  G    +K +  +   +      +   KE+      
Sbjct: 10  SDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEET-----QRTFLKEV------ 58

Query: 254 LRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYG--- 310
                  +M  +E    HPNV+   F                              G   
Sbjct: 59  ------KVMRCLE----HPNVL--KF-----------------------------IGVLY 77

Query: 311 RNMSLFI---LMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLK 367
           ++  L      +K     LR  ++   +Q    +RV     +  G+ +L+     HRDL 
Sbjct: 78  KDKRLNFITEYIK--GGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLHSMNIIHRDLN 135

Query: 368 SDNILLDCSEDNTCPQLVITDFG---------SSYTNKSGLSMQYSSADIELGGNVALMA 418
           S N L+   E+      V+ DFG         +       L          + GN   MA
Sbjct: 136 SHNCLVR--ENKNV---VVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMA 190

Query: 419 PEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPF-YQSARNTDYEVNAL----PQL 473
           PE+       +      K D ++ G V  EI G  N       R  D+ +N         
Sbjct: 191 PEMINGRS--YD----EKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFLDRYC 244

Query: 474 NTNVPEVMRRLVAKLLENDPSDRPS 498
             N P     +  +  + DP  RPS
Sbjct: 245 PPNCPPSFFPITVRCCDLDPEKRPS 269

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 93.5 bits (233), Expect = 4e-21
 Identities = 54/311 (17%), Positives = 97/311 (31%), Gaps = 73/311 (23%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKP 253
              Q    +  G+   V++   +  G  YA+K                   K+     + 
Sbjct: 57  QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRS----------MSPFRGPKD-----RA 101

Query: 254 LRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNM 313
            +L E   + S E +  HP  V +  A+ +                              
Sbjct: 102 RKLAE---VGSHEKVGQHPCCVRLEQAWEE----------------------------GG 130

Query: 314 SLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
            L++  +     L+ +     A L   +        L  + HL+     H D+K  NI L
Sbjct: 131 ILYLQTELCGPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLHSQGLVHLDVKPANIFL 190

Query: 374 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELG--GNVALMAPEVALATPGLFSF 431
                  C    + DF        GL ++  +A       G+   MAPE+          
Sbjct: 191 G--PRGRC---KLGDF--------GLLVELGTAGAGEVQEGDPRYMAPELLQG------- 230

Query: 432 VNYS-KSDAWTAGTVAYEIF-GHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLL 489
            +Y   +D ++ G    E+    + P          +    P+    +   +R ++  +L
Sbjct: 231 -SYGTAADVFSLGLTILEVACNMELPHGGEGWQQLRQGYLPPEFTAGLSSELRSVLVMML 289

Query: 490 ENDPSDRPSAE 500
           E DP  R +AE
Sbjct: 290 EPDPKLRATAE 300

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 92.0 bits (229), Expect = 1e-20
 Identities = 63/322 (19%), Positives = 112/322 (34%), Gaps = 72/322 (22%)

Query: 193 VKVDDIQIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAILKAMSKELLPLR 251
           VK     I K I  G ++ V++        YA+K +            L+    + L   
Sbjct: 25  VKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVN-----------LEEADNQTLDSY 73

Query: 252 KPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGR 311
           +    NE   +N ++       ++ ++    D+         IY                
Sbjct: 74  R----NEIAYLNKLQQ--HSDKIIRLY----DY---EITDQYIY---------------- 104

Query: 312 NMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNI 371
                ++M+  N DL ++L+++   +   ER   +  +LE V  ++ H   H DLK  N 
Sbjct: 105 -----MVMECGNIDLNSWLKKK-KSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANF 158

Query: 372 LLDCSEDNTCPQLVITDFG-SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFS 430
           L+    D     L + DFG ++       S+   S      G V  M PE          
Sbjct: 159 LIV---DG---MLKLIDFGIANQMQPDTTSVVKDS----QVGTVNYMPPEAIKDMSSSRE 208

Query: 431 FVNY-----SKSDAWTAGTVAYE-IFGHDNPFYQSARNTDYEVNALPQLN------TNVP 478
                     KSD W+ G + Y   +G     +Q   N   +++A+   N          
Sbjct: 209 NGKSKSKISPKSDVWSLGCILYYMTYGK--TPFQQIINQISKLHAIIDPNHEIEFPDIPE 266

Query: 479 EVMRRLVAKLLENDPSDRPSAE 500
           + ++ ++   L+ DP  R S  
Sbjct: 267 KDLQDVLKCCLKRDPKQRISIP 288

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 91.7 bits (228), Expect = 2e-20
 Identities = 69/318 (21%), Positives = 119/318 (37%), Gaps = 82/318 (25%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMS-KELLPLRK 252
           +     + I +G+            G +Y +K +            +  MS KE      
Sbjct: 24  EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEIN-----------ISRMSSKEREES-- 70

Query: 253 PLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRN 312
                E  ++ +++    HPN+V    +F +                            N
Sbjct: 71  ---RREVAVLANMK----HPNIVQYRESFEE----------------------------N 95

Query: 313 MSLFILMKKY--NTDLRNYLRERCAQLSMHERVLL--FTQLLEGVTHLNMHRTAHRDLKS 368
            SL+I+M  Y    DL   +  +   L   E  +L  F Q+   + H++  +  HRD+KS
Sbjct: 96  GSLYIVMD-YCEGGDLFKRINAQKGVL-FQEDQILDWFVQICLALKHVHDRKILHRDIKS 153

Query: 369 DNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGL 428
            NI L   +D T   + + DFG +    S + +  +       G    ++PE+    P  
Sbjct: 154 QNIFLT--KDGT---VQLGDFGIARVLNSTVELARACI-----GTPYYLSPEICENKP-- 201

Query: 429 FSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVN-----ALPQLNTNVPEVMR 482
                Y+ KSD W  G V YE+    + F   A +    V      + P ++ +    +R
Sbjct: 202 -----YNNKSDIWALGCVLYELCTLKHAFE--AGSMKNLVLKIISGSFPPVSLHYSYDLR 254

Query: 483 RLVAKLLENDPSDRPSAE 500
            LV++L + +P DRPS  
Sbjct: 255 SLVSQLFKRNPRDRPSVN 272

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 91.3 bits (227), Expect = 2e-20
 Identities = 55/329 (16%), Positives = 105/329 (31%), Gaps = 71/329 (21%)

Query: 197 DIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPL 254
                + + +G  + V        G  YALK +       +     +   +E    R   
Sbjct: 30  HYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRIL-----CHEQQDREEAQREADMHRL-- 82

Query: 255 RLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMS 314
             N             HPN++ +                                G    
Sbjct: 83  -FN-------------HPNILRLVAYCLR------------------------ERGAKHE 104

Query: 315 LFILMKKY-NTDLRNYLRERCAQ---LSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDN 370
            ++L+  +    L N +     +   L+  + + L   +  G+  ++    AHRDLK  N
Sbjct: 105 AWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAKGYAHRDLKPTN 164

Query: 371 ILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNV----ALMAPEVALATP 426
           ILL   ++    Q V+ D GS       +     +  ++         +  APE+     
Sbjct: 165 ILLG--DEG---QPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQS 219

Query: 427 GLFSFVNYSKSDAWTAGTVAYEI-FGHDNPFYQSARNTDYEVNAL-----PQLNTNVPEV 480
                ++  ++D W+ G V Y + FG   P+    +  D    A+        +      
Sbjct: 220 H--CVIDE-RTDVWSLGCVLYAMMFGE-GPYDMVFQKGDSVALAVQNQLSIPQSPRHSSA 275

Query: 481 MRRLVAKLLENDPSDRPSA-ELAATVCQL 508
           + +L+  ++  DP  RP    L + +  L
Sbjct: 276 LWQLLNSMMTVDPHQRPHIPLLLSQLEAL 304

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 91.3 bits (227), Expect = 3e-20
 Identities = 61/325 (18%), Positives = 109/325 (33%), Gaps = 78/325 (24%)

Query: 193 VKVDDIQIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAILKAMSKELLPLR 251
           VK     I K I  G ++ V++        YA+K +            L+    + L   
Sbjct: 6   VKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVN-----------LEEADNQTL--- 51

Query: 252 KPLRLNEDMLMNSVENL----PPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTG 307
                  D   N +  L         ++ ++    D+         IY            
Sbjct: 52  -------DSYRNEIAYLNKLQQHSDKIIRLY----DY---EITDQYIY------------ 85

Query: 308 GYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLK 367
                    ++M+  N DL ++L+++   +   ER   +  +LE V  ++ H   H DLK
Sbjct: 86  ---------MVMECGNIDLNSWLKKK-KSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLK 135

Query: 368 SDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG 427
             N L+    D     L + DFG +   +   +     + +   G V  M PE       
Sbjct: 136 PANFLIV---DG---MLKLIDFGIANQMQPDTTSVVKDSQV---GTVNYMPPEAIKDMSS 186

Query: 428 LFSFVNY-----SKSDAWTAGTVAYE-IFGHDNPFYQSARNTDYEVNALPQLN------T 475
                        KSD W+ G + Y   +G     +Q   N   +++A+   N       
Sbjct: 187 SRENGKSKSKISPKSDVWSLGCILYYMTYGK--TPFQQIINQISKLHAIIDPNHEIEFPD 244

Query: 476 NVPEVMRRLVAKLLENDPSDRPSAE 500
              + ++ ++   L+ DP  R S  
Sbjct: 245 IPEKDLQDVLKCCLKRDPKQRISIP 269

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 90.3 bits (224), Expect = 1e-19
 Identities = 63/323 (19%), Positives = 114/323 (35%), Gaps = 74/323 (22%)

Query: 193 VKVDDIQIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAILKAMSKELLPLR 251
           VK     I K I  G ++ V++        YA+K +            L+    + L   
Sbjct: 53  VKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVN-----------LEEADNQTLDSY 101

Query: 252 KPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGR 311
           +    NE   +N ++       ++ ++    D+         IY                
Sbjct: 102 R----NEIAYLNKLQQ--HSDKIIRLY----DY---EITDQYIY---------------- 132

Query: 312 NMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNI 371
                ++M+  N DL ++L+++   +   ER   +  +LE V  ++ H   H DLK  N 
Sbjct: 133 -----MVMECGNIDLNSWLKKK-KSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANF 186

Query: 372 LLDCSEDNTCPQLVITDFGSS--YTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF 429
           L+    D     L + DFG +      +   ++ S       G V  M PE         
Sbjct: 187 LIV---DG---MLKLIDFGIANQMQPDTTSVVKDSQV-----GAVNYMPPEAIKDMSSSR 235

Query: 430 SFVNY-----SKSDAWTAGTVAYE-IFGHDNPFYQSARNTDYEVNALPQLNTNV--PEVM 481
                      KSD W+ G + Y   +G     +Q   N   +++A+   N  +  P++ 
Sbjct: 236 ENGKSKSKISPKSDVWSLGCILYYMTYGK--TPFQQIINQISKLHAIIDPNHEIEFPDIP 293

Query: 482 ----RRLVAKLLENDPSDRPSAE 500
               + ++   L+ DP  R S  
Sbjct: 294 EKDLQDVLKCCLKRDPKQRISIP 316

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 88.5 bits (220), Expect = 2e-19
 Identities = 62/319 (19%), Positives = 118/319 (36%), Gaps = 76/319 (23%)

Query: 199 QIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRL 256
           +  + + +G ++VV     +    EYA+K+            I    +       + ++ 
Sbjct: 20  EPKEILGRGVSSVVRRCIHKPTCKEYAVKI------------IDV--TGGGSFSAEEVQE 65

Query: 257 NEDMLMNSVE---NLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNM 313
             +  +  V+    +  HPN++ +   +         ++  +   L   L    G     
Sbjct: 66  LREATLKEVDILRKVSGHPNIIQLKDTYET-------NTFFF---LVFDL-MKKG----- 109

Query: 314 SLF--ILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNI 371
            LF  +  K         L E+  +        +   LLE +  L+     HRDLK +NI
Sbjct: 110 ELFDYLTEKVT-------LSEKETRK-------IMRALLEVICALHKLNIVHRDLKPENI 155

Query: 372 LLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF 431
           LLD   D+    + +TDFG S     G  ++      E+ G  + +APE+ +      + 
Sbjct: 156 LLD---DDM--NIKLTDFGFSCQLDPGEKLR------EVCGTPSYLAPEI-IECSMNDNH 203

Query: 432 VNYSKS-DAWTAGTVAYEI-------FGHDNPF--YQSARNTDYEVNALPQLNTNVPEVM 481
             Y K  D W+ G + Y         F H       +   + +Y+  +      +  + +
Sbjct: 204 PGYGKEVDMWSTGVIMY-TLLAGSPPFWHRKQMLMLRMIMSGNYQFGSPEW--DDYSDTV 260

Query: 482 RRLVAKLLENDPSDRPSAE 500
           + LV++ L   P  R +AE
Sbjct: 261 KDLVSRFLVVQPQKRYTAE 279

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 88.1 bits (218), Expect = 4e-19
 Identities = 42/342 (12%), Positives = 90/342 (26%), Gaps = 76/342 (22%)

Query: 176 NMFDKLVQVETLPDVDDVKV--DDIQIGKFIAKGTNAVVYEATFR-------GVEYALKM 226
           N F+   ++  +    + ++    + +   + +G  A VYEAT           ++ LK+
Sbjct: 43  NTFEWQCKLPAIKPKTEFQLGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKV 102

Query: 227 MFNYSAASNSHAILKAMSKELLPLRKPL-RLNEDMLMNSVENLPPHPNVVVMHFAFTDFV 285
                          A   E     + + RL   M              +  + A     
Sbjct: 103 ------------QKPANPWEFYIGTQLMERLKPSM----------QHMFMKFYSAHLF-- 138

Query: 286 PSIPDSS-LIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVL 344
               + S L+                   +L   +  Y       + +          + 
Sbjct: 139 ---QNGSVLVGE------------LYSYGTLLNAINLYKNTPEKVMPQGLV-------IS 176

Query: 345 LFTQLLEGVTHLNMHRTAHRDLKSDNILL------DCSEDNTCPQLVITDFGSSYTNKSG 398
              ++L  +  ++     H D+K DN +L         ED+    L + D G S   K  
Sbjct: 177 FAMRMLYMIEQVHDCEIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQSIDMKLF 236

Query: 399 LSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFY 457
                 +A             E+    P       ++ + D +      Y +        
Sbjct: 237 PKGTIFTAKC---ETSGFQCVEMLSNKP-------WNYQIDYFGVAATVYCMLFGTYMKV 286

Query: 458 QSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSA 499
           ++            +L     ++       +L         +
Sbjct: 287 KNEGGECKPEGLFRRL--PHLDMWNEFFHVMLNIPDCHHLPS 326

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 87.0 bits (216), Expect = 5e-19
 Identities = 68/331 (20%), Positives = 117/331 (35%), Gaps = 86/331 (25%)

Query: 188 PDVDDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSK 245
           PD+    + + +I K I +G  + VY A     GV  ALK +       ++ A    +  
Sbjct: 24  PDMGYNTLANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKV-QIFDLMDAKARADCI-- 80

Query: 246 ELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNP 305
                       E  L+  +     HPNV+  + +F +                      
Sbjct: 81  -----------KEIDLLKQLN----HPNVIKYYASFIE---------------------- 103

Query: 306 TGGYGRNMSLFILMKKY--NTDLRNYLRE-RCAQLSMHERVLL--FTQLLEGVTHLNMHR 360
                 +  L I+++      DL   ++  +  +  + ER +   F QL   + H++  R
Sbjct: 104 ------DNELNIVLE-LADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSRR 156

Query: 361 TAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPE 420
             HRD+K  N+ +          + + D G      S  +  +S       G    M+PE
Sbjct: 157 VMHRDIKPANVFIT--ATGV---VKLGDLGLGRFFSSKTTAAHSLV-----GTPYYMSPE 206

Query: 421 VALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNAL--------- 470
                        Y+ KSD W+ G + YE+    +PFY    N    + +L         
Sbjct: 207 RIHENG-------YNFKSDIWSLGCLLYEMAALQSPFYGDKMN----LYSLCKKIEQCDY 255

Query: 471 -PQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
            P  + +  E +R+LV   +  DP  RP   
Sbjct: 256 PPLPSDHYSEELRQLVNMCINPDPEKRPDVT 286

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 86.5 bits (215), Expect = 5e-19
 Identities = 52/319 (16%), Positives = 101/319 (31%), Gaps = 79/319 (24%)

Query: 192 DVKVDDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLR 251
            +    +     + +  +  +++  ++G +  +K++        S    +  ++E   LR
Sbjct: 6   GIDFKQLNFLTKLNENHSGELWKGRWQGNDIVVKVL---KVRDWSTRKSRDFNEECPRLR 62

Query: 252 KPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLI--YPSALPARLNPTGGY 309
                              HPNV+ +  A     P  P  +LI  +   +P       G 
Sbjct: 63  I-FS---------------HPNVLPVLGACQS--PPAPHPTLITHW---MP------YG- 94

Query: 310 GRNMSLFILMKKYNTDLRNYLRE-RCAQLSMHERVLLFTQLLEGVTHLNMHRTA----HR 364
                           L N L E     +   + V     +  G+  L  H         
Sbjct: 95  ---------------SLYNVLHEGTNFVVDQSQAVKFALDMARGMAFL--HTLEPLIPRH 137

Query: 365 DLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALA 424
            L S ++++D  ED T     I+     ++ +S   M             A +APE    
Sbjct: 138 ALNSRSVMID--EDMTA---RISMADVKFSFQSPGRM----------YAPAWVAPEALQK 182

Query: 425 TPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPF-----YQSARNTDYEVNALPQLNTNVPE 479
            P      N   +D W+   + +E+   + PF      +       E    P +   +  
Sbjct: 183 KP---EDTNRRSADMWSFAVLLWELVTREVPFADLSNMEIGMKVALE-GLRPTIPPGISP 238

Query: 480 VMRRLVAKLLENDPSDRPS 498
            + +L+   +  DP+ RP 
Sbjct: 239 HVSKLMKICMNEDPAKRPK 257

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 85.8 bits (213), Expect = 8e-19
 Identities = 60/325 (18%), Positives = 110/325 (33%), Gaps = 83/325 (25%)

Query: 194 KVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLR 251
           + +D ++   I  G+     +   +  G     K + +Y +       +    K++L   
Sbjct: 4   RAEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKEL-DYGS-------MTEAEKQML--- 52

Query: 252 KPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGR 311
               ++E  L+  ++    HPN+V  +    D                            
Sbjct: 53  ----VSEVNLLRELK----HPNIVRYYDRIID--------------------------RT 78

Query: 312 NMSLFILMKKY--NTDLRNYLRE-RCAQLSMHERVLL--FTQLLEGVTHL-----NMHRT 361
           N +L+I+M+ Y    DL + + +    +  + E  +L   TQL   +          H  
Sbjct: 79  NTTLYIVME-YCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTV 137

Query: 362 AHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEV 421
            HRDLK  N+ LD         + + DFG +       S   +       G    M+PE 
Sbjct: 138 LHRDLKPANVFLD--GKQN---VKLGDFGLARILNHDTSFAKTFV-----GTPYYMSPEQ 187

Query: 422 ALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVN-----ALPQLNT 475
                       Y+ KSD W+ G + YE+     PF   A +              ++  
Sbjct: 188 MNRMS-------YNEKSDIWSLGCLLYELCALMPPFT--AFSQKELAGKIREGKFRRIPY 238

Query: 476 NVPEVMRRLVAKLLENDPSDRPSAE 500
              + +  ++ ++L      RPS E
Sbjct: 239 RYSDELNEIITRMLNLKDYHRPSVE 263

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 87.8 bits (218), Expect = 8e-19
 Identities = 71/321 (22%), Positives = 114/321 (35%), Gaps = 76/321 (23%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKP 253
           D+  + K +  G    V  A  R    + A+++            I K   ++       
Sbjct: 135 DEYIMSKTLGSGACGEVKLAFERKTCKKVAIRI------------ISK---RKFAIGSAR 179

Query: 254 LRLNEDMLMNSVENLP--PHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGR 311
                  +   +E L    HP ++ +   F        D  ++            GG   
Sbjct: 180 EADPALNVETEIEILKKLNHPCIIKIKNFFDA-----EDYYIVLELM-------EGG--- 224

Query: 312 NMSLF--ILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSD 369
              LF  ++  K        L+E   +L        F Q+L  V +L+ +   HRDLK +
Sbjct: 225 --ELFDKVVGNKR-------LKEATCKL-------YFYQMLLAVQYLHENGIIHRDLKPE 268

Query: 370 NILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF 429
           N+LL   E++    + ITDFG S        M+       L G    +APEV L + G  
Sbjct: 269 NVLLSSQEEDC--LIKITDFGHSKILGETSLMR------TLCGTPTYLAPEV-LVSVG-- 317

Query: 430 SFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYEVNA---------LPQLNTNVPE 479
               Y+++ D W+ G + +       PF      T   +           +P++   V E
Sbjct: 318 -TAGYNRAVDCWSLGVILFICLSGYPPFS--EHRTQVSLKDQITSGKYNFIPEVWAEVSE 374

Query: 480 VMRRLVAKLLENDPSDRPSAE 500
               LV KLL  DP  R + E
Sbjct: 375 KALDLVKKLLVVDPKARFTTE 395

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 85.5 bits (212), Expect = 2e-18
 Identities = 66/338 (19%), Positives = 114/338 (33%), Gaps = 89/338 (26%)

Query: 197 DIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRL 256
           DI + + + KG    V+  +++G   A+K+  +    S           EL      LR 
Sbjct: 9   DITLLECVGKGRYGEVWRGSWQGENVAVKIFSSRDEKS------WFRETELYNTVM-LR- 60

Query: 257 NEDMLMNSVENLPPHPNVVVMHF--AFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMS 314
                         H N++   F  +      S     LI              Y    S
Sbjct: 61  --------------HENIL--GFIASDMTSRHSSTQLWLITH------------YHEMGS 92

Query: 315 LFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRT--------AHRDL 366
           L+           +YL+     L     + +   +  G+ HL++           AHRDL
Sbjct: 93  LY-----------DYLQLT--TLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDL 139

Query: 367 KSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP 426
           KS NIL+   ++  C    I D G +  +    +      +  + G    MAPEV   T 
Sbjct: 140 KSKNILVK--KNGQC---CIADLGLAVMHSQSTNQLDVGNNPRV-GTKRYMAPEVLDETI 193

Query: 427 GLFSFVNYSKSDAWTAGTVAYEIF----------GHDNPFYQSARN--TDYEVNAL---- 470
            +  F +Y + D W  G V +E+            +  PFY    N  +  ++  +    
Sbjct: 194 QVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPSFEDMRKVVCVD 253

Query: 471 ---PQL-----NTNVPEVMRRLVAKLLENDPSDRPSAE 500
              P +     +      + +L+ +    +PS R +A 
Sbjct: 254 QQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTAL 291

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 84.3 bits (209), Expect = 3e-18
 Identities = 50/315 (15%), Positives = 94/315 (29%), Gaps = 66/315 (20%)

Query: 199 QIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRL 256
              + I  G    V++   R  G  YA+K            +             +   L
Sbjct: 14  HELEKIGSGEFGSVFKCVKRLDGCIYAIK-----------RSKKPLAGSV----DEQNAL 58

Query: 257 NEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLF 316
            E   + +   L  H +VV    A+ +                            +  + 
Sbjct: 59  RE---VYAHAVLGQHSHVVRYFSAWAE----------------------------DDHML 87

Query: 317 ILMKKY--NTDLRNYLRERCAQLS-MHERVL--LFTQLLEGVTHLNMHRTAHRDLKSDNI 371
           I  + Y     L + + E    +S   E  L  L  Q+  G+ +++     H D+K  NI
Sbjct: 88  IQNE-YCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSMSLVHMDIKPSNI 146

Query: 372 LLDCSEDNTCPQLVITDFGSSYTNKS------GLSMQYSSADIELGGNVALMAPEVALAT 425
            +  +           +   +           G   + SS  +E  G+   +A EV    
Sbjct: 147 FISRTSIPNAASEEGDEDDWASNKVMFKIGDLGHVTRISSPQVEE-GDSRFLANEVLQEN 205

Query: 426 PGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLV 485
                  +  K+D +          G +       +  +     LP++   + +    L+
Sbjct: 206 YT-----HLPKADIFALALTVVCAAGAEPLPRNGDQWHEIRQGRLPRIPQVLSQEFTELL 260

Query: 486 AKLLENDPSDRPSAE 500
             ++  DP  RPSA 
Sbjct: 261 KVMIHPDPERRPSAM 275

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 84.8 bits (210), Expect = 4e-18
 Identities = 70/345 (20%), Positives = 112/345 (32%), Gaps = 89/345 (25%)

Query: 190 VDDVKVDDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLP 249
           V       IQ+ K I KG    V+   +RG + A+K+ F    AS           E+  
Sbjct: 31  VQRTIAKQIQMVKQIGKGRYGEVWMGKWRGEKVAVKVFFTTEEAS------WFRETEIYQ 84

Query: 250 LRKPLRLNEDMLMNSVENLPPHPNVVVMHF--AFTDFVPSIPDSSLIYPSALPARLNPTG 307
               +R               H N++   F  A      S     LI             
Sbjct: 85  TVL-MR---------------HENIL--GFIAADIKGTGSWTQLYLITD----------- 115

Query: 308 GYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRT------ 361
            Y  N SL+           +YL+     L     + L    + G+ HL+          
Sbjct: 116 -YHENGSLY-----------DYLKST--TLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKP 161

Query: 362 --AHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAP 419
             AHRDLKS NIL+   ++ TC    I D G +    S  +      +  + G    M P
Sbjct: 162 AIAHRDLKSKNILVK--KNGTC---CIADLGLAVKFISDTNEVDIPPNTRV-GTKRYMPP 215

Query: 420 EVALATPGLFSFVNYSKSDAWTAGTVAYEIF-----GHDNPFYQSARNTDYEVNA----- 469
           EV   +     F +Y  +D ++ G + +E+      G     YQ   +     +      
Sbjct: 216 EVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYHDLVPSDPSYEDM 275

Query: 470 ------------LPQ--LNTNVPEVMRRLVAKLLENDPSDRPSAE 500
                        P    +      M +L+ +   ++P+ R +A 
Sbjct: 276 REIVCIKKLRPSFPNRWSSDECLRQMGKLMTECWAHNPASRLTAL 320

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 85.5 bits (212), Expect = 9e-18
 Identities = 63/332 (18%), Positives = 107/332 (32%), Gaps = 97/332 (29%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKA--MSKELLPLR 251
           +     + +  G    V     +    E A+K+            I K+           
Sbjct: 36  ESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKV------------IKKSQFDKGRYSDDN 83

Query: 252 KPLRLNEDMLMNSVENLP--PHPNVVVMHFAF---------TDFVPSIPDSSLIYPSALP 300
           K +    + + N +  L    HPN++ +   F         T+F                
Sbjct: 84  KNIEKFHEEIYNEISLLKSLDHPNIIKLFDVFEDKKYFYLVTEFY--------------- 128

Query: 301 ARLNPTGGYGRNMSLF--ILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNM 358
                 GG      LF  I+ +           E  A         +  Q+L G+ +L+ 
Sbjct: 129 -----EGG-----ELFEQIINRHKFD-------ECDAAN-------IMKQILSGICYLHK 164

Query: 359 HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMA 418
           H   HRD+K +NILL+         + I DFG S        ++      +  G    +A
Sbjct: 165 HNIVHRDIKPENILLENKNSLL--NIKIVDFGLSSFFSKDYKLR------DRLGTAYYIA 216

Query: 419 PEVALATPGLFSFVNYS-KSDAWTAGTVAYEIF-GHDNPFY--------QSARNTDYEVN 468
           PEV            Y+ K D W+ G + Y +  G+  PF         +      Y  +
Sbjct: 217 PEVLKK--------KYNEKCDVWSCGVIMYILLCGY-PPFGGQNDQDIIKKVEKGKYYFD 267

Query: 469 ALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
                  N+ +  + L+  +L  D + R +AE
Sbjct: 268 FNDW--KNISDEAKELIKLMLTYDYNKRCTAE 297

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 82.5 bits (204), Expect = 2e-17
 Identities = 50/351 (14%), Positives = 99/351 (28%), Gaps = 107/351 (30%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKP 253
               +   + +G  A V+    +  G  +A+K+  N S        ++    E   L+K 
Sbjct: 9   HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMR----EFEVLKK- 63

Query: 254 LRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNM 313
             LN             H N+V +     +       +                      
Sbjct: 64  --LN-------------HKNIVKLFAIEEE-----TTTRHKV------------------ 85

Query: 314 SLFILMKKYNT--DLRNYL--RERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSD 369
              ++M+ +     L   L        L   E +++   ++ G+ HL  +   HR++K  
Sbjct: 86  ---LIME-FCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENGIVHRNIKPG 141

Query: 370 NILLDCSEDNTCPQLVITDFGSS--YTNKSGL-----SMQYSSADIELGGNVALMAPEV- 421
           NI+    ED       +TDFG++    +         + +Y             + P++ 
Sbjct: 142 NIMRVIGEDGQ-SVYKLTDFGAARELEDDEQFVSLYGTEEY-------------LHPDMY 187

Query: 422 ALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTD---------------- 464
             A         Y    D W+ G   Y       PF                        
Sbjct: 188 ERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSGA 247

Query: 465 ---------------YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
                           ++     L+  +  ++  ++A +LE D       +
Sbjct: 248 ISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFD 298

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 82.5 bits (204), Expect = 2e-17
 Identities = 66/337 (19%), Positives = 116/337 (34%), Gaps = 85/337 (25%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLR 255
             I + + I KG    V+   +RG E A+K+  +    S                    R
Sbjct: 42  RTIVLQESIGKGRFGEVWRGKWRGEEVAVKIFSSREERSW------------------FR 83

Query: 256 LNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSL 315
             E      +     H N++    A      +     L+              Y  + SL
Sbjct: 84  EAEIYQTVMLR----HENILGFIAADNKDNGTWTQLWLVSD------------YHEHGSL 127

Query: 316 FILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRT--------AHRDLK 367
           F           +YL      +++   + L      G+ HL+M           AHRDLK
Sbjct: 128 F-----------DYLNRY--TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLK 174

Query: 368 SDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG 427
           S NIL+   ++ TC    I D G +  + S       + +  + G    MAPEV   +  
Sbjct: 175 SKNILVK--KNGTC---CIADLGLAVRHDSATDTIDIAPNHRV-GTKRYMAPEVLDDSIN 228

Query: 428 LFSFVNYSKSDAWTAGTVAYEIF-----GHDNPFYQSA-RNTDYEVNALPQLNTNV---- 477
           +  F ++ ++D +  G V +EI      G  +  YQ    +      ++ ++   V    
Sbjct: 229 MKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQK 288

Query: 478 --PEV--------MRRLVAKLLE----NDPSDRPSAE 500
             P +          R++AK++      + + R +A 
Sbjct: 289 LRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTAL 325

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 84.0 bits (208), Expect = 3e-17
 Identities = 71/323 (21%), Positives = 117/323 (36%), Gaps = 89/323 (27%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKP 253
           D  +  + + KG+   V     +  G E A+K+            I K         +  
Sbjct: 26  DRYKGQRVLGKGSFGEVILCKDKITGQECAVKV------------ISKR--------QVK 65

Query: 254 LRLNEDMLMNSVENLP--PHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARL---NPTGG 308
            + +++ L+  V+ L    HPN++ ++  F        D    Y       L     TGG
Sbjct: 66  QKTDKESLLREVQLLKQLDHPNIMKLYEFF-------EDKGYFY-------LVGEVYTGG 111

Query: 309 YGRNMSLF--ILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDL 366
                 LF  I+ +K  +       E  A         +  Q+L G+T+++ ++  HRDL
Sbjct: 112 -----ELFDEIISRKRFS-------EVDAAR-------IIRQVLSGITYMHKNKIVHRDL 152

Query: 367 KSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP 426
           K +N+LL+    +    + I DFG S   ++   M+      +  G    +APEV     
Sbjct: 153 KPENLLLESKSKDA--NIRIIDFGLSTHFEASKKMK------DKIGTAYYIAPEVLHG-- 202

Query: 427 GLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFY--------QSARNTDYEVNALPQLNTNV 477
                  Y  K D W+ G + Y +     PF         +      Y           V
Sbjct: 203 ------TYDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVEKGKYTFELPQW--KKV 254

Query: 478 PEVMRRLVAKLLENDPSDRPSAE 500
            E  + L+ K+L   PS R SA 
Sbjct: 255 SESAKDLIRKMLTYVPSMRISAR 277

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 83.2 bits (206), Expect = 4e-17
 Identities = 72/323 (22%), Positives = 112/323 (34%), Gaps = 90/323 (27%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKP 253
           +  Q  K +  G    V     +   VE A+K+            I K            
Sbjct: 37  EMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKI------------IRK---------TSV 75

Query: 254 LRLNEDMLMNSVENLP--PHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARL---NPTGG 308
              +   L+  V  L    HPN++ ++  F        D    Y       L      GG
Sbjct: 76  STSSNSKLLEEVAVLKLLDHPNIMKLYDFF-------EDKRNYY-------LVMECYKGG 121

Query: 309 YGRNMSLF--ILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDL 366
                 LF  I+ +           E  A +       +  Q+L GVT+L+ H   HRDL
Sbjct: 122 -----ELFDEIIHRMKFN-------EVDAAV-------IIKQVLSGVTYLHKHNIVHRDL 162

Query: 367 KSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP 426
           K +N+LL+  E +    + I DFG S   ++   M+      E  G    +APEV     
Sbjct: 163 KPENLLLESKEKDA--LIKIVDFGLSAVFENQKKMK------ERLGTAYYIAPEVLRK-- 212

Query: 427 GLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFY--------QSARNTDYEVNALPQLNTNV 477
                  Y  K D W+ G + + +     PF         +      Y  ++      NV
Sbjct: 213 ------KYDEKCDVWSIGVILFILLAGYPPFGGQTDQEILRKVEKGKYTFDSPEW--KNV 264

Query: 478 PEVMRRLVAKLLENDPSDRPSAE 500
            E  + L+ ++L+ D   R SA+
Sbjct: 265 SEGAKDLIKQMLQFDSQRRISAQ 287

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 81.6 bits (202), Expect = 4e-17
 Identities = 74/320 (23%), Positives = 116/320 (36%), Gaps = 80/320 (25%)

Query: 199 QIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRL 256
            + K +  G    V  A  R    + A+K+            I K   ++          
Sbjct: 13  IMSKTLGSGACGEVKLAFERKTCKKVAIKI------------ISK---RKFAIGSAREAD 57

Query: 257 NEDMLMNSVENLP--PHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMS 314
               +   +E L    HP ++ +   F        D  ++            GG      
Sbjct: 58  PALNVETEIEILKKLNHPCIIKIKNFFDA-----EDYYIVLELM-------EGG-----E 100

Query: 315 LF--ILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNIL 372
           LF  ++  K        L+E   +L        F Q+L  V +L+ +   HRDLK +N+L
Sbjct: 101 LFDKVVGNKR-------LKEATCKL-------YFYQMLLAVQYLHENGIIHRDLKPENVL 146

Query: 373 LDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV 432
           L   E++    + ITDFG S        M+       L G    +APEV L + G     
Sbjct: 147 LSSQEEDC--LIKITDFGHSKILGETSLMR------TLCGTPTYLAPEV-LVSVG---TA 194

Query: 433 NYSKS-DAWTAGTVAYEIF--GHDNPFYQSARNTDYEV---------NALPQLNTNVPEV 480
            Y+++ D W+ G + + I   G+  PF      T   +         N +P++   V E 
Sbjct: 195 GYNRAVDCWSLGVILF-ICLSGYP-PFS--EHRTQVSLKDQITSGKYNFIPEVWAEVSEK 250

Query: 481 MRRLVAKLLENDPSDRPSAE 500
              LV KLL  DP  R + E
Sbjct: 251 ALDLVKKLLVVDPKARFTTE 270

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score = 80.8 bits (200), Expect = 7e-17
 Identities = 70/340 (20%), Positives = 105/340 (30%), Gaps = 95/340 (27%)

Query: 196 DDIQIGK-FIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRK 252
           D  Q+ +  + +G +A V          EYA+K+            I K          +
Sbjct: 12  DVYQLQEDVLGEGAHARVQTCINLITSQEYAVKI------------IEK----------Q 49

Query: 253 PLRLNEDMLMNSVE---NLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGY 309
           P  +   +    VE       H NV+ +   F +           Y   L       GG 
Sbjct: 50  PGHIRSRV-FREVEMLYQCQGHRNVLELIEFFEE-------EDRFY---LVFEK-MRGG- 96

Query: 310 GRNMSLF--ILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLK 367
               S+   I  +++         E  A + +         +   +  L+    AHRDLK
Sbjct: 97  ----SILSHIHKRRHFN-------ELEASVVVQ-------DVASALDFLHNKGIAHRDLK 138

Query: 368 SDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELG--GNVALMAPEVALAT 425
            +NIL +   +   P + I DF      K        S    L   G+   MAPEV  A 
Sbjct: 139 PENILCE-HPNQVSP-VKICDFDLGSGIKLNGDCSPISTPELLTPCGSAEYMAPEVVEAF 196

Query: 426 PGLFSFVNYSKS-DAWTAGTVAYEIF--GHDNPFYQSARNTDYEVNALPQLNTNVPEVMR 482
               S   Y K  D W+ G + Y I   G+  PF      +D   +           +  
Sbjct: 197 SEEAS--IYDKRCDLWSLGVILY-ILLSGYP-PFV-GRCGSDCGWDRGEACPACQNMLFE 251

Query: 483 R----------------------LVAKLLENDPSDRPSAE 500
                                  L++KLL  D   R SA 
Sbjct: 252 SIQEGKYEFPDKDWAHISCAAKDLISKLLVRDAKQRLSAA 291

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 80.5 bits (199), Expect = 2e-16
 Identities = 64/375 (17%), Positives = 119/375 (31%), Gaps = 108/375 (28%)

Query: 151 ASGTGILTKEDEFEGVCWEIRHAVNNMFDKLVQVETLPDVDDVKVDDIQIGKFIAKGTNA 210
             G+ +  K D  +    +      +++ K V          V  D   I + +  G   
Sbjct: 9   HHGSKVRGKYDGPKIN--DYDKFYEDIWKKYVPQPVEVKQGSVY-DYYDILEELGSGAFG 65

Query: 211 VVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENL 268
           VV+    +  G  +  K +               + K  +        NE  +MN +   
Sbjct: 66  VVHRCVEKATGRVFVAKFI----------NTPYPLDKYTV-------KNEISIMNQLH-- 106

Query: 269 PPHPNVVVMHFAF---------TDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLF--I 317
             HP ++ +H AF          +F+                    +GG      LF  I
Sbjct: 107 --HPKLINLHDAFEDKYEMVLILEFL--------------------SGG-----ELFDRI 139

Query: 318 LMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSE 377
             + Y       + E      M        Q  EG+ H++ H   H D+K +NI+ +  +
Sbjct: 140 AAEDYK------MSEAEVINYMR-------QACEGLKHMHEHSIVHLDIKPENIMCETKK 186

Query: 378 DNTCPQLVITDFGSS--YTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS 435
            +    + I DFG +        + +  ++A+          APE+    P         
Sbjct: 187 AS---SVKIIDFGLATKLNPDEIVKVTTATAE--------FAAPEIVDREP-------VG 228

Query: 436 KS-DAWTAGTVAYEIFGHDNPFYQSARNTDYEV-NALPQLN--------TNVPEVMRRLV 485
              D W  G + Y +    +PF       D E    + + +        ++V    +  +
Sbjct: 229 FYTDMWAIGVLGYVLLSGLSPFA---GEDDLETLQNVKRCDWEFDEDAFSSVSPEAKDFI 285

Query: 486 AKLLENDPSDRPSAE 500
             LL+ +P  R +  
Sbjct: 286 KNLLQKEPRKRLTVH 300

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 80.1 bits (198), Expect = 2e-16
 Identities = 67/319 (21%), Positives = 117/319 (36%), Gaps = 77/319 (24%)

Query: 199 QIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRL 256
                I +G ++VV     R  G E+A+K+            +            + L  
Sbjct: 97  DPKDVIGRGVSSVVRRCVHRATGHEFAVKI------------MEV---TAERLSPEQLEE 141

Query: 257 NEDMLMNSVE---NLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNM 313
             +           +  HP+++ +  ++         SS ++   L   L    G     
Sbjct: 142 VREATRRETHILRQVAGHPHIITLIDSYES-------SSFMF---LVFDL-MRKG----- 185

Query: 314 SLF--ILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNI 371
            LF  +  K   +       E+  +        +   LLE V+ L+ +   HRDLK +NI
Sbjct: 186 ELFDYLTEKVALS-------EKETRS-------IMRSLLEAVSFLHANNIVHRDLKPENI 231

Query: 372 LLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF 431
           LLD   DN   Q+ ++DFG S   + G  ++      EL G    +APE+ L      + 
Sbjct: 232 LLD---DNM--QIRLSDFGFSCHLEPGEKLR------ELCGTPGYLAPEI-LKCSMDETH 279

Query: 432 VNYSKS-DAWTAGTVAYEI-------FGHDNP--FYQSARNTDYEVNALPQLNTNVPEVM 481
             Y K  D W  G + +         F H       +      Y+ ++      +    +
Sbjct: 280 PGYGKEVDLWACGVILF-TLLAGSPPFWHRRQILMLRMIMEGQYQFSSPEW--DDRSSTV 336

Query: 482 RRLVAKLLENDPSDRPSAE 500
           + L+++LL+ DP  R +AE
Sbjct: 337 KDLISRLLQVDPEARLTAE 355

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 80.1 bits (198), Expect = 2e-16
 Identities = 63/327 (19%), Positives = 115/327 (35%), Gaps = 98/327 (29%)

Query: 199 QIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRL 256
            IG+ +  G  A+V +   +  G+EYA K +             ++ +      R+ +  
Sbjct: 15  DIGEELGSGQFAIVKKCREKSTGLEYAAKFI----------KKRQSRASRRGVCREEIE- 63

Query: 257 NEDMLMNSVENLPPHPNVVVMHFAF---------TDFVPSIPDSSLIYPSALPARLNPTG 307
            E  ++  V     HPN++ +H  +          + V                    +G
Sbjct: 64  REVSILRQVL----HPNIITLHDVYENRTDVVLILELV--------------------SG 99

Query: 308 GYGRNMSLF--ILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRD 365
           G      LF  +  K         L E  A            Q+L+GV +L+  + AH D
Sbjct: 100 G-----ELFDFLAQK-------ESLSEEEA-------TSFIKQILDGVNYLHTKKIAHFD 140

Query: 366 LKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALAT 425
           LK +NI+L   ++   P + + DFG ++  + G+  +       + G    +APE+    
Sbjct: 141 LKPENIML-LDKNIPIPHIKLIDFGLAHEIEDGVEFK------NIFGTPEFVAPEIVNYE 193

Query: 426 PGLFSFVNYSKS-DAWTAGTVAYEI-------FGHDNP---FYQ-SARNTDYEVNALPQL 473
           P            D W+ G + Y I       F  D         +A + D++       
Sbjct: 194 P-------LGLEADMWSIGVITY-ILLSGASPFLGDTKQETLANITAVSYDFDEEFFS-- 243

Query: 474 NTNVPEVMRRLVAKLLENDPSDRPSAE 500
                E+ +  + KLL  +   R + +
Sbjct: 244 --QTSELAKDFIRKLLVKETRKRLTIQ 268

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 79.7 bits (197), Expect = 2e-16
 Identities = 70/329 (21%), Positives = 113/329 (34%), Gaps = 88/329 (26%)

Query: 190 VDDVKVDDI----QIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAM 243
           +D    D +    ++   + +G  ++VY    +     YALK+            + K +
Sbjct: 43  IDGSNRDALSDFFEVESELGRGATSIVYRCKQKGTQKPYALKV------------LKKTV 90

Query: 244 SKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARL 303
            K+++         E  ++  +     HPN++ +   F          + I    L   L
Sbjct: 91  DKKIV-------RTEIGVLLRLS----HPNIIKLKEIFET-------PTEIS---LVLEL 129

Query: 304 NPTGGYGRNMSLF--ILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRT 361
             TGG      LF  I+ K Y +       ER A            Q+LE V +L+ +  
Sbjct: 130 -VTGG-----ELFDRIVEKGYYS-------ERDA-------ADAVKQILEAVAYLHENGI 169

Query: 362 AHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEV 421
            HRDLK +N+L      +    L I DFG S   +  + M+       + G     APE+
Sbjct: 170 VHRDLKPENLLYATPAPDA--PLKIADFGLSKIVEHQVLMK------TVCGTPGYCAPEI 221

Query: 422 ALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNT----- 475
                       Y    D W+ G + Y +     PFY      D  +             
Sbjct: 222 LRGCA-------YGPEVDMWSVGIITYILLCGFEPFY--DERGDQFMFRRILNCEYYFIS 272

Query: 476 ----NVPEVMRRLVAKLLENDPSDRPSAE 500
                V    + LV KL+  DP  R +  
Sbjct: 273 PWWDEVSLNAKDLVRKLIVLDPKKRLTTF 301

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 78.4 bits (194), Expect = 2e-16
 Identities = 65/314 (20%), Positives = 117/314 (37%), Gaps = 72/314 (22%)

Query: 193 VKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPL 250
             ++D +IG+ + KG    VY A  +      ALK++F          + KA  +  L  
Sbjct: 6   WALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFK-------AQLEKAGVEHQL-- 56

Query: 251 RKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYG 310
                  E  + + +     HPN++ ++  F D       ++ +Y               
Sbjct: 57  -----RREVEIQSHLR----HPNILRLYGYFHD-------ATRVY--------------- 85

Query: 311 RNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDN 370
                 IL       +   L+ + ++          T+L   +++ +  R  HRD+K +N
Sbjct: 86  -----LILEYAPLGTVYRELQ-KLSKFDEQRTATYITELANALSYCHSKRVIHRDIKPEN 139

Query: 371 ILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFS 430
           +LL  + +     L I DFG S    S           +L G +  + PE+         
Sbjct: 140 LLLGSAGE-----LKIADFGWSVHAPSSRRT-------DLCGTLDYLPPEMIEGRM---- 183

Query: 431 FVNYSKS-DAWTAGTVAYE-IFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVA 486
              + +  D W+ G + YE + G   PF  +     Y+            V E  R L++
Sbjct: 184 ---HDEKVDLWSLGVLCYEFLVGKP-PFEANTYQETYKRISRVEFTFPDFVTEGARDLIS 239

Query: 487 KLLENDPSDRPSAE 500
           +LL+++PS RP   
Sbjct: 240 RLLKHNPSQRPMLR 253

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 80.3 bits (198), Expect = 3e-16
 Identities = 53/350 (15%), Positives = 103/350 (29%), Gaps = 105/350 (30%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKP 253
               +   + +G  A V+    +  G  +A+K+  N S        ++    E   L+K 
Sbjct: 9   HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMR----EFEVLKK- 63

Query: 254 LRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNM 313
             LN             H N+V +     +       +                      
Sbjct: 64  --LN-------------HKNIVKLFAIEEE-----TTTRHKV------------------ 85

Query: 314 SLFILMKKYNT-DLRNYL--RERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDN 370
              ++M+      L   L        L   E +++   ++ G+ HL  +   HR++K  N
Sbjct: 86  ---LIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENGIVHRNIKPGN 142

Query: 371 ILLDCSEDNTCPQLVITDFGSS--YTNKSGL-----SMQYSSADIELGGNVALMAPEV-A 422
           I+    ED       +TDFG++    +         + +Y             + P++  
Sbjct: 143 IMRVIGEDGQS-VYKLTDFGAARELEDDEQFVSLYGTEEY-------------LHPDMYE 188

Query: 423 LATPGLFSFVNY-SKSDAWTAGTVAYEIFGHDNPFY------------------------ 457
            A         Y +  D W+ G   Y       PF                         
Sbjct: 189 RAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSGAI 248

Query: 458 ---QSARNTDYEVNALPQLNTNVPEVMRRLV----AKLLENDPSDRPSAE 500
              Q A N   + +    ++ ++   ++ L+    A +LE D       +
Sbjct: 249 SGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFD 298

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 80.5 bits (199), Expect = 3e-16
 Identities = 67/327 (20%), Positives = 107/327 (32%), Gaps = 104/327 (31%)

Query: 199 QIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRL 256
            I   + KG+   V +   R    EYA+K+            I K               
Sbjct: 25  NIVCMLGKGSFGEVLKCKDRITQQEYAVKV------------INK---------ASAKNK 63

Query: 257 NEDMLMNSVENLP--PHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMS 314
           +   ++  VE L    HPN++ +     D                            + S
Sbjct: 64  DTSTILREVELLKKLDHPNIMKLFEILED----------------------------SSS 95

Query: 315 LFILMKKYNTDL------------RNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTA 362
            +I+      +L            R    E  A         +  Q+  G+T+++ H   
Sbjct: 96  FYIVG-----ELYTGGELFDEIIKRKRFSEHDAAR-------IIKQVFSGITYMHKHNIV 143

Query: 363 HRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVA 422
           HRDLK +NILL+  E +    + I DFG S   +    M+      +  G    +APEV 
Sbjct: 144 HRDLKPENILLESKEKDC--DIKIIDFGLSTCFQQNTKMK------DRIGTAYYIAPEVL 195

Query: 423 LATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFY--------QSARNTDYEVNALPQL 473
                      Y  K D W+AG + Y +     PFY        +      Y  +     
Sbjct: 196 RG--------TYDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFDLPQW- 246

Query: 474 NTNVPEVMRRLVAKLLENDPSDRPSAE 500
              + +  + L+ K+L   PS R +A 
Sbjct: 247 -RTISDDAKDLIRKMLTFHPSLRITAT 272

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 78.0 bits (193), Expect = 4e-16
 Identities = 73/320 (22%), Positives = 129/320 (40%), Gaps = 87/320 (27%)

Query: 194 KVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLR 251
           K++D ++G  + KG+ A VY A     G+E A+KM+             KAM K    + 
Sbjct: 9   KIEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDK-----------KAMYKA--GMV 55

Query: 252 KPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGR 311
           + ++ NE  +   ++    HP+++ ++  F D       S+ +Y                
Sbjct: 56  QRVQ-NEVKIHCQLK----HPSILELYNYFED-------SNYVY---------------- 87

Query: 312 NMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNI 371
                +L   +N ++  YL+ R    S +E      Q++ G+ +L+ H   HRDL   N+
Sbjct: 88  ----LVLEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGMLYLHSHGILHRDLTLSNL 143

Query: 372 LLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELG---GNVALMAPEVALATPGL 428
           LL  + +     + I DF        GL+ Q      +     G    ++PE+A  +   
Sbjct: 144 LLTRNMN-----IKIADF--------GLATQLKMPHEKHYTLCGTPNYISPEIATRSA-- 188

Query: 429 FSFVNYS-KSDAWTAGTVAYE-IFGHDNPF--------YQSARNTDYEVNALPQLNTNVP 478
                +  +SD W+ G + Y  + G   PF               DYE   +P     + 
Sbjct: 189 -----HGLESDVWSLGCMFYTLLIGRP-PFDTDTVKNTLNKVVLADYE---MPS---FLS 236

Query: 479 EVMRRLVAKLLENDPSDRPS 498
              + L+ +LL  +P+DR S
Sbjct: 237 IEAKDLIHQLLRRNPADRLS 256

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 78.0 bits (193), Expect = 4e-16
 Identities = 59/327 (18%), Positives = 96/327 (29%), Gaps = 102/327 (31%)

Query: 199 QIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRL 256
              + +  G    V+    R  G+E  +K             I K  S+           
Sbjct: 25  IFKRKLGSGAFGDVHLVEERSSGLERVIKT------------INKDRSQV---------- 62

Query: 257 NEDMLMNSVENLP--PHPNVVVMHFAF---------TDFVPSIPDSSLIYPSALPARLNP 305
             + +   +E L    HPN++ +   F          +                      
Sbjct: 63  PMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVMETC-------------------- 102

Query: 306 TGGYGRNMSLF--ILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAH 363
            GG      L   I+  +        L E            L  Q++  + + +     H
Sbjct: 103 EGG-----ELLERIVSAQAR---GKALSEGYVAE-------LMKQMMNALAYFHSQHVVH 147

Query: 364 RDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVAL 423
           +DLK +NIL   +  ++   + I DFG +   KS              G    MAPEV  
Sbjct: 148 KDLKPENILFQDTSPHS--PIKIIDFGLAELFKSDEHST------NAAGTALYMAPEV-F 198

Query: 424 ATPGLFSFVNYSKS-DAWTAGTVAYEI-------FGHDNP--FYQSARNTDYEVNALPQL 473
                    + +   D W+AG V Y         F   +     Q A   +       + 
Sbjct: 199 KR-------DVTFKCDIWSAGVVMY-FLLTGCLPFTGTSLEEVQQKATYKEPNYAVECR- 249

Query: 474 NTNVPEVMRRLVAKLLENDPSDRPSAE 500
              +      L+ ++L  DP  RPSA 
Sbjct: 250 --PLTPQAVDLLKQMLTKDPERRPSAA 274

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 78.7 bits (194), Expect = 4e-16
 Identities = 65/362 (17%), Positives = 113/362 (31%), Gaps = 100/362 (27%)

Query: 184 VETLPDVDDVKVDDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAM 243
           +E       + +D++++ + I +G    VY+ +      A+K+    +  +         
Sbjct: 1   MEAAASEPSLDLDNLKLLELIGRGRYGAVYKGSLDERPVAVKVFSFANRQN--------F 52

Query: 244 SKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDS---SLIYPSALP 300
             E               +  +E    H N+    F   D   +        L+      
Sbjct: 53  INEK----------NIYRVPLME----HDNIA--RFIVGDERVTADGRMEYLLVME---- 92

Query: 301 ARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHR 360
                   Y  N SL   +  + +D  +  R             L   +  G+ +L+   
Sbjct: 93  --------YYPNGSLXKYLSLHTSDWVSSCR-------------LAHSVTRGLAYLHTEL 131

Query: 361 T---------AHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELG 411
                     +HRDL S N+L+    D TC   VI+DFG S        ++    D    
Sbjct: 132 PRGDHYKPAISHRDLNSRNVLVK--NDGTC---VISDFGLSMRLTGNRLVRPGEEDNAAI 186

Query: 412 GNV---ALMAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV 467
             V     MAPEV      L    +   + D +  G + +EIF      +      +Y++
Sbjct: 187 SEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVPEYQM 246

Query: 468 NALPQLNTNVP--EVMRRLV-----------------------AKLLE----NDPSDRPS 498
            A      N P  E M+ LV                        + +E     D   R +
Sbjct: 247 -AFQTEVGNHPTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARLT 305

Query: 499 AE 500
           A+
Sbjct: 306 AQ 307

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 78.5 bits (194), Expect = 5e-16
 Identities = 62/327 (18%), Positives = 115/327 (35%), Gaps = 98/327 (29%)

Query: 199 QIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRL 256
            IG+ +  G  A+V +   +  G+EYA K +             ++ +      R+ +  
Sbjct: 15  DIGEELGSGQFAIVKKCREKSTGLEYAAKFI----------KKRQSRASRRGVSREEIE- 63

Query: 257 NEDMLMNSVENLPPHPNVVVMHFAF---------TDFVPSIPDSSLIYPSALPARLNPTG 307
            E  ++  V     H NV+ +H  +          + V                    +G
Sbjct: 64  REVSILRQVL----HHNVITLHDVYENRTDVVLILELV--------------------SG 99

Query: 308 GYGRNMSLF--ILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRD 365
           G      LF  +  K         L E  A            Q+L+GV +L+  + AH D
Sbjct: 100 G-----ELFDFLAQK-------ESLSEEEA-------TSFIKQILDGVNYLHTKKIAHFD 140

Query: 366 LKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALAT 425
           LK +NI+L   ++   P + + DFG ++  + G+  +       + G    +APE+    
Sbjct: 141 LKPENIML-LDKNIPIPHIKLIDFGLAHEIEDGVEFK------NIFGTPEFVAPEIVNYE 193

Query: 426 PGLFSFVNYSKS-DAWTAGTVAYEI-------FGHDNP---FYQ-SARNTDYEVNALPQL 473
           P            D W+ G + Y I       F  D         ++ + D++       
Sbjct: 194 P-------LGLEADMWSIGVITY-ILLSGASPFLGDTKQETLANITSVSYDFDEEFFS-- 243

Query: 474 NTNVPEVMRRLVAKLLENDPSDRPSAE 500
             +  E+ +  + KLL  +   R + +
Sbjct: 244 --HTSELAKDFIRKLLVKETRKRLTIQ 268

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 77.6 bits (192), Expect = 5e-16
 Identities = 61/320 (19%), Positives = 109/320 (34%), Gaps = 84/320 (26%)

Query: 193 VKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPL 250
             +DD  IG+ + KG    VY A  +      ALK++F       S    + +  +L   
Sbjct: 11  FTIDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFK------SQLEKEGVEHQLR-- 62

Query: 251 RKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYG 310
                  E  + + +     HPN++ M+  F D          IY               
Sbjct: 63  ------REIEIQSHLR----HPNILRMYNYFHD-------RKRIY--------------- 90

Query: 311 RNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDN 370
                 +L      +L   L+ +  +           +L + + + +  +  HRD+K +N
Sbjct: 91  -----LMLEFAPRGELYKELQ-KHGRFDEQRSATFMEELADALHYCHERKVIHRDIKPEN 144

Query: 371 ILLDCSEDNTCPQLVITDFGSSYTNKSGL------SMQYSSADIELGGNVALMAPEVALA 424
           +L+    +     L I DFG S    S        ++ Y             + PE+   
Sbjct: 145 LLMGYKGE-----LKIADFGWSVHAPSLRRRTMCGTLDY-------------LPPEMIEG 186

Query: 425 TPGLFSFVNYSKS-DAWTAGTVAYE-IFGHDNPFYQSARNTDYE--VNALPQLNTNVPEV 480
                    + +  D W AG + YE + G   PF   +    +   VN   +    + + 
Sbjct: 187 KT-------HDEKVDLWCAGVLCYEFLVGMP-PFDSPSHTETHRRIVNVDLKFPPFLSDG 238

Query: 481 MRRLVAKLLENDPSDRPSAE 500
            + L++KLL   P  R   +
Sbjct: 239 SKDLISKLLRYHPPQRLPLK 258

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 80.5 bits (198), Expect = 5e-16
 Identities = 57/355 (16%), Positives = 104/355 (29%), Gaps = 109/355 (30%)

Query: 188 PDVDDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSK 245
           P +        ++ + +  G    V     +  G + A+K               + +S 
Sbjct: 6   PSLPTQTCGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQ------------CRQELSP 53

Query: 246 ELLPLRKPLRLNEDMLMNSVENLPP--HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARL 303
           +          N +     ++ +    HPNVV       D +  +  + L          
Sbjct: 54  K----------NRERWCLEIQIMKKLNHPNVVSA-REVPDGLQKLAPNDLPL-------- 94

Query: 304 NPTGGYGRNMSLFILMKKYNT--DLRNYL--RERCAQLSMHERVLLFTQLLEGVTHLNMH 359
                        + M+ Y    DLR YL   E C  L       L + +   + +L+ +
Sbjct: 95  -------------LAME-YCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHEN 140

Query: 360 RTAHRDLKSDNILLDCSEDNTCPQLVITDFGSS--YTNKSGL-----SMQYSSADIELGG 412
           R  HRDLK +NI+L            I D G +              ++QY         
Sbjct: 141 RIIHRDLKPENIVLQPGPQR--LIHKIIDLGYAKELDQGELCTEFVGTLQY--------- 189

Query: 413 NVALMAPEVALATPGLFSFVNYS-KSDAWTAGTVAYE-------IFGHDNP--FYQSARN 462
               +APE+            Y+   D W+ GT+A+E          +  P  ++   R 
Sbjct: 190 ----LAPEL-------LEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQPVQWHGKVRE 238

Query: 463 TDY-----------------EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
                                +     L+  +   + R +  +L      R +  
Sbjct: 239 KSNEHIVVYDDLTGAVKFSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDP 293

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 78.0 bits (193), Expect = 5e-16
 Identities = 75/318 (23%), Positives = 125/318 (39%), Gaps = 88/318 (27%)

Query: 199 QIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRL 256
              + +  G  + V+    R  G  +ALK             I K+ +            
Sbjct: 12  IFMEVLGSGAFSEVFLVKQRLTGKLFALKC------------IKKSPAF----------- 48

Query: 257 NEDMLMNSVENLP--PHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMS 314
            +  L N +  L    H N+V +   +         ++  Y   L  +L  +GG      
Sbjct: 49  RDSSLENEIAVLKKIKHENIVTLEDIYES-------TTHYY---LVMQL-VSGG-----E 92

Query: 315 LF--ILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNIL 372
           LF  IL +   T       E+ A        L+  Q+L  V +L+ +   HRDLK +N+L
Sbjct: 93  LFDRILERGVYT-------EKDA-------SLVIQQVLSAVKYLHENGIVHRDLKPENLL 138

Query: 373 LDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV 432
               E+N+  +++ITDFG S   ++G+ M          G    +APEV    P      
Sbjct: 139 YLTPEENS--KIMITDFGLSKMEQNGI-MS------TACGTPGYVAPEVLAQKP------ 183

Query: 433 NYSKS-DAWTAGTVAYEI-------FGHDNP--FYQSARNTDYEVNALPQLNTNVPEVMR 482
            YSK+ D W+ G + Y I       F  +     ++  +   YE  + P  + ++ E  +
Sbjct: 184 -YSKAVDCWSIGVITY-ILLCGYPPFYEETESKLFEKIKEGYYEFES-PFWD-DISESAK 239

Query: 483 RLVAKLLENDPSDRPSAE 500
             +  LLE DP++R + E
Sbjct: 240 DFICHLLEKDPNERYTCE 257

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 79.9 bits (197), Expect = 6e-16
 Identities = 68/331 (20%), Positives = 119/331 (35%), Gaps = 87/331 (26%)

Query: 188 PDVDDVKVDDIQ----IGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILK 241
           P   ++K D +     I + +  G   VV+  T R  G  +A K +              
Sbjct: 145 PQPVEIKHDHVLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFV----------MTPH 194

Query: 242 AMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDS-SLIYPSALP 300
              KE +         E   M+ +     HP +V +H AF D      +   +IY     
Sbjct: 195 ESDKETV-------RKEIQTMSVLR----HPTLVNLHDAFED-----DNEMVMIYEFM-- 236

Query: 301 ARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHR 360
                +GG      LF    +   D  N + E  A       V    Q+ +G+ H++ + 
Sbjct: 237 -----SGG-----ELF----EKVADEHNKMSEDEA-------VEYMRQVCKGLCHMHENN 275

Query: 361 TAHRDLKSDNILLDCSEDNTCPQLVITDFGSS--YTNKSGLSMQYSSADIELGGNVALMA 418
             H DLK +NI+      N   +L + DFG +     K  + +   +A+          A
Sbjct: 276 YVHLDLKPENIMFTTKRSN---ELKLIDFGLTAHLDPKQSVKVTTGTAE--------FAA 324

Query: 419 PEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFY--------QSARNTDYEVNA 469
           PEV                 D W+ G ++Y +    +PF         ++ ++ D+ ++ 
Sbjct: 325 PEV-------AEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDWNMDD 377

Query: 470 LPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
                + + E  +  + KLL  DP+ R +  
Sbjct: 378 SA--FSGISEDGKDFIRKLLLADPNTRMTIH 406

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score = 77.8 bits (192), Expect = 7e-16
 Identities = 56/339 (16%), Positives = 105/339 (30%), Gaps = 91/339 (26%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLR 255
             +Q+ +  A+G    V++A       A+K+       S                     
Sbjct: 24  MPLQLLEVKARGRFGCVWKAQLLNEYVAVKIFPIQDKQS------------------WQN 65

Query: 256 LNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSL 315
             E   +  ++    H N++    A         D  LI                     
Sbjct: 66  EYEVYSLPGMK----HENILQFIGAEKRGTSVDVDLWLITA------------------- 102

Query: 316 FILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRT----------AHRD 365
               +K +  L ++L+     +S +E   +   +  G+ +L+              +HRD
Sbjct: 103 --FHEKGS--LSDFLKAN--VVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRD 156

Query: 366 LKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALAT 425
           +KS N+LL    + T     I DFG +   ++G S   +   +   G    MAPEV    
Sbjct: 157 IKSKNVLLK--NNLTA---CIADFGLALKFEAGKSAGDTHGQV---GTRRYMAPEVLEGA 208

Query: 426 PGLFSFVNYSKSDAWTAGTVAYEI------FGHDNPFYQ-------SARNTDYEVNAL-- 470
              F    + + D +  G V +E+             Y            +  ++  +  
Sbjct: 209 I-NFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQHPSLEDMQEVVV 267

Query: 471 -----PQLNTNVPE-VMRRLVAKLLE----NDPSDRPSA 499
                P L     +     ++ + +E    +D   R SA
Sbjct: 268 HKKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLSA 306

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 77.7 bits (192), Expect = 7e-16
 Identities = 58/313 (18%), Positives = 98/313 (31%), Gaps = 78/313 (24%)

Query: 199 QIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRL 256
           ++G  + KG    V+        ++ A+K+            I +       PL   +  
Sbjct: 34  RLGPLLGKGGFGTVFAGHRLTDRLQVAIKV------------IPRNRVLGWSPLSDSVTC 81

Query: 257 N-EDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSL 315
             E  L+  V     HP V+ +     D+              L                
Sbjct: 82  PLEVALLWKVGAGGGHPGVIRLL----DW---FETQEGFM---LVLERPLPAQ------- 124

Query: 316 FILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDC 375
                    DL +Y+ E+   L        F Q++  + H +     HRD+K +NIL+D 
Sbjct: 125 ---------DLFDYITEK-GPLGEGPSRCFFGQVVAAIQHCHSRGVVHRDIKDENILID- 173

Query: 376 SEDNTCPQLVITDFGSSYTNKSGL------SMQYSSADIELGGNVALMAPEVALATPGLF 429
                     + DFGS              +  YS              PE         
Sbjct: 174 LRRG---CAKLIDFGSGALLHDEPYTDFDGTRVYS-------------PPEW-------I 210

Query: 430 SFVNY--SKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAK 487
           S   Y    +  W+ G + Y++   D PF +     + E++    ++ +       L+ +
Sbjct: 211 SRHQYHALPATVWSLGILLYDMVCGDIPFERDQEILEAELHFPAHVSPDC----CALIRR 266

Query: 488 LLENDPSDRPSAE 500
            L   PS RPS E
Sbjct: 267 CLAPKPSSRPSLE 279

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 77.2 bits (191), Expect = 7e-16
 Identities = 73/326 (22%), Positives = 120/326 (36%), Gaps = 88/326 (26%)

Query: 190 VDDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKEL 247
           VD         G+F+ KG  A  +E +       +A K++           +LK   +E 
Sbjct: 9   VDPRSRRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIV-------PKSLLLKPHQREK 61

Query: 248 LPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTG 307
           +         E  +  S+     H +VV  H  F D       +  ++   L        
Sbjct: 62  M-------SMEISIHRSLA----HQHVVGFHGFFED-------NDFVF-VVL-------- 94

Query: 308 GYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLK 367
              R  SL  L K+     R  L E  A+           Q++ G  +L+ +R  HRDLK
Sbjct: 95  ELCRRRSLLELHKR-----RKALTEPEARY-------YLRQIVLGCQYLHRNRVIHRDLK 142

Query: 368 SDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELG---GNVALMAPEVALA 424
             N+ L+   +     + I DF        GL+ +            G    +APEV L+
Sbjct: 143 LGNLFLNEDLE-----VKIGDF--------GLATKVEYDGERKKVLCGTPNYIAPEV-LS 188

Query: 425 TPGLFSFVNYS-KSDAWTAGTVAYE-IFGHDNPF--------YQSARNTDYEVNALPQLN 474
             G      +S + D W+ G + Y  + G   PF        Y   +  +Y    +P+  
Sbjct: 189 KKG------HSFEVDVWSIGCIMYTLLVGKP-PFETSCLKETYLRIKKNEYS---IPK-- 236

Query: 475 TNVPEVMRRLVAKLLENDPSDRPSAE 500
            ++  V   L+ K+L+ DP+ RP+  
Sbjct: 237 -HINPVAASLIQKMLQTDPTARPTIN 261

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 77.3 bits (191), Expect = 1e-15
 Identities = 73/326 (22%), Positives = 119/326 (36%), Gaps = 88/326 (26%)

Query: 190 VDDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKEL 247
           VD         G+F+ KG  A  +E +       +A K++           +LK   +E 
Sbjct: 35  VDPRSRRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIV-------PKSLLLKPHQREK 87

Query: 248 LPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTG 307
           +         E  +  S+     H +VV  H  F D       +  ++   L        
Sbjct: 88  M-------SMEISIHRSLA----HQHVVGFHGFFED-------NDFVF-VVL-------- 120

Query: 308 GYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLK 367
              R  SL  L K+     R  L E  A+           Q++ G  +L+ +R  HRDLK
Sbjct: 121 ELCRRRSLLELHKR-----RKALTEPEARY-------YLRQIVLGCQYLHRNRVIHRDLK 168

Query: 368 SDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELG---GNVALMAPEVALA 424
             N+ L+   +     + I DF        GL+ +            G    +APEV L+
Sbjct: 169 LGNLFLNEDLE-----VKIGDF--------GLATKVEYDGERKKVLCGTPNYIAPEV-LS 214

Query: 425 TPGLFSFVNYS-KSDAWTAGTVAYE-IFGHDNPF--------YQSARNTDYEVNALPQLN 474
             G      +S + D W+ G + Y  + G   PF        Y   +  +Y    +P   
Sbjct: 215 KKG------HSFEVDVWSIGCIMYTLLVGKP-PFETSCLKETYLRIKKNEYS---IP--- 261

Query: 475 TNVPEVMRRLVAKLLENDPSDRPSAE 500
            ++  V   L+ K+L+ DP+ RP+  
Sbjct: 262 KHINPVAASLIQKMLQTDPTARPTIN 287

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 76.4 bits (189), Expect = 1e-15
 Identities = 68/320 (21%), Positives = 118/320 (36%), Gaps = 84/320 (26%)

Query: 199 QIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRL 256
           ++G+ +  G  A+V +   +  G EYA K +             +  S      R+ +  
Sbjct: 8   EMGEELGSGQFAIVRKCRQKGTGKEYAAKFI----------KKRRLSSSRRGVSREEIE- 56

Query: 257 NEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSS--LIYPSALPARLNPTGGYGRNMS 314
            E  ++  +     HPN++ +H  F +       +   LI           +GG      
Sbjct: 57  REVNILREIR----HPNIITLHDIFEN------KTDVVLILELV-------SGG-----E 94

Query: 315 LF--ILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNIL 372
           LF  +  K         L E  A            Q+L+GV +L+  R AH DLK +NI+
Sbjct: 95  LFDFLAEK-------ESLTEDEA-------TQFLKQILDGVHYLHSKRIAHFDLKPENIM 140

Query: 373 LDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV 432
           L   ++   P++ + DFG ++  ++G   +       + G    +APE+    P      
Sbjct: 141 L-LDKNVPNPRIKLIDFGIAHKIEAGNEFK------NIFGTPEFVAPEIVNYEP------ 187

Query: 433 NYSKS-DAWTAGTVAYEI-------FGHDNP---FYQ-SARNTDYEVNALPQLNTNVPEV 480
                 D W+ G + Y I       F  +         SA N D++         N  E+
Sbjct: 188 -LGLEADMWSIGVITY-ILLSGASPFLGETKQETLTNISAVNYDFDEEYFS----NTSEL 241

Query: 481 MRRLVAKLLENDPSDRPSAE 500
            +  + +LL  DP  R +  
Sbjct: 242 AKDFIRRLLVKDPKRRMTIA 261

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 76.5 bits (189), Expect = 2e-15
 Identities = 66/336 (19%), Positives = 117/336 (34%), Gaps = 100/336 (29%)

Query: 193 VKVDDIQ----IGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKE 246
            + +++      G+ +  G  AVV +   +  G++YA K +             +  S  
Sbjct: 4   FRQENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFI----------KKRRTKSSR 53

Query: 247 LLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAF---------TDFVPSIPDSSLIYPS 297
               R+ +   E  ++  ++    HPNV+ +H  +          + V            
Sbjct: 54  RGVSREDIE-REVSILKEIQ----HPNVITLHEVYENKTDVILILELV------------ 96

Query: 298 ALPARLNPTGGYGRNMSLF--ILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTH 355
                    GG      LF  +  K+  T       E  A            Q+L GV +
Sbjct: 97  --------AGG-----ELFDFLAEKESLT-------EEEA-------TEFLKQILNGVYY 129

Query: 356 LNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVA 415
           L+  + AH DLK +NI+L    +   P++ I DFG ++    G   +       + G   
Sbjct: 130 LHSLQIAHFDLKPENIML-LDRNVPKPRIKIIDFGLAHKIDFGNEFK------NIFGTPE 182

Query: 416 LMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQ----------SARNTD 464
            +APE+    P            D W+ G + Y +    +PF            SA N +
Sbjct: 183 FVAPEIVNYEP-------LGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYE 235

Query: 465 YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
           +E         N   + +  + +LL  DP  R + +
Sbjct: 236 FEDEYFS----NTSALAKDFIRRLLVKDPKKRMTIQ 267

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 75.4 bits (186), Expect = 4e-15
 Identities = 44/186 (23%), Positives = 76/186 (40%), Gaps = 28/186 (15%)

Query: 326 LRNYLRERCAQLSMHERVL-LFT-QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQ 383
           L   LR +   L  +E+ +  +T Q+LEG+ +L+ ++  HRD+K DN+L++ +       
Sbjct: 106 LSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQIVHRDIKGDNVLIN-TYSGVLK- 163

Query: 384 LVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAG 443
             I+DFG+S           +       G +  MAPE+    P  +       +D W+ G
Sbjct: 164 --ISDFGTSKRLAGINPCTET-----FTGTLQYMAPEIIDKGPRGYGK----AADIWSLG 212

Query: 444 TVAYEIFGHDNPFYQSARNTDYEVNAL---------PQLNTNVPEVMRRLVAKLLENDPS 494
               E+     PFY           A+         P++  ++    +  + K  E DP 
Sbjct: 213 CTIIEMATGKPPFY----ELGEPQAAMFKVGMFKVHPEIPESMSAEAKAFILKCFEPDPD 268

Query: 495 DRPSAE 500
            R  A 
Sbjct: 269 KRACAN 274

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 75.8 bits (187), Expect = 4e-15
 Identities = 68/324 (20%), Positives = 114/324 (35%), Gaps = 91/324 (28%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKP 253
           D  ++ + I  G+ +V      +   +E+A+K+            I K+        R P
Sbjct: 22  DGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKI------------IDKSK-------RDP 62

Query: 254 LRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNM 313
               E +L         HPN++ +   + D          +Y   +   L   GG     
Sbjct: 63  TEEIEILLRYG-----QHPNIITLKDVYDD-------GKYVY---VVTEL-MKGG----- 101

Query: 314 SLF--ILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNI 371
            L   IL +K+ +       ER A   +         + + V +L+     HRDLK  NI
Sbjct: 102 ELLDKILRQKFFS-------EREASAVLF-------TITKTVEYLHAQGVVHRDLKPSNI 147

Query: 372 LLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELG---GNVALMAPEVALATPGL 428
           L      N    + I DF        G + Q  + +  L         +APEV       
Sbjct: 148 LYVDESGNPES-IRICDF--------GFAKQLRAENGLLMTPCYTANFVAPEVLERQG-- 196

Query: 429 FSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNT-----------N 476
                Y  + D W+ G + Y +     PF     +T  E+  L ++ +           +
Sbjct: 197 -----YDAACDIWSLGVLLYTMLTGYTPFANGPDDTPEEI--LARIGSGKFSLSGGYWNS 249

Query: 477 VPEVMRRLVAKLLENDPSDRPSAE 500
           V +  + LV+K+L  DP  R +A 
Sbjct: 250 VSDTAKDLVSKMLHVDPHQRLTAA 273

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 75.4 bits (186), Expect = 5e-15
 Identities = 42/195 (21%), Positives = 76/195 (38%), Gaps = 36/195 (18%)

Query: 324 TDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQ 383
             LR+ +      ++    + +     + +   + +   HRD+K  NI++  S  N    
Sbjct: 101 VTLRDIVHTE-GPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMI--SATN---A 154

Query: 384 LVITDFG-SSYTNKSGLSMQYSSADIELGGNVALMAPEVAL---ATPGLFSFVNYSKSDA 439
           + + DFG +     SG S+  ++A I   G    ++PE A                +SD 
Sbjct: 155 VKVMDFGIARAIADSGNSVTQTAAVI---GTAQYLSPEQARGDSVDA---------RSDV 202

Query: 440 WTAGTVAYEI------FGHDNPF---YQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLE 490
           ++ G V YE+      F  D+P    YQ  R    +       +  +   +  +V K L 
Sbjct: 203 YSLGCVLYEVLTGEPPFTGDSPVSVAYQHVRE---DPIPPSARHEGLSADLDAVVLKALA 259

Query: 491 NDPSDRPS--AELAA 503
            +P +R    AE+ A
Sbjct: 260 KNPENRYQTAAEMRA 274

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 74.6 bits (184), Expect = 6e-15
 Identities = 75/318 (23%), Positives = 118/318 (37%), Gaps = 86/318 (27%)

Query: 199 QIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKA--MSKELLPLRKPL 254
            I   + KG+   V +   R    EYA+K+            I KA   +K+   +    
Sbjct: 25  NIVCMLGKGSFGEVLKCKDRITQQEYAVKV------------INKASAKNKDTSTIL--- 69

Query: 255 RLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMS 314
              E  L+  ++    HPN++ +     D       SS  Y   +   L  TGG      
Sbjct: 70  --REVELLKKLD----HPNIMKLFEILED-------SSSFY---IVGEL-YTGG-----E 107

Query: 315 LF--ILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNIL 372
           LF  I+ +K  +       E  A         +  Q+  G+T+++ H   HRDLK +NIL
Sbjct: 108 LFDEIIKRKRFS-------EHDAAR-------IIKQVFSGITYMHKHNIVHRDLKPENIL 153

Query: 373 LDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV 432
           L+  E +    + I DFG S   +    M+      +  G    +APEV L         
Sbjct: 154 LESKEKDC--DIKIIDFGLSTCFQQNTKMK------DRIGTAYYIAPEV-LRGT------ 198

Query: 433 NYSKS-DAWTAGTVAYEI-------FGHDNP--FYQSARNTDYEVNALPQLNTNVPEVMR 482
            Y +  D W+AG + Y I       F   N     +      Y  +        + +  +
Sbjct: 199 -YDEKCDVWSAGVILY-ILLSGTPPFYGKNEYDILKRVETGKYAFDLPQW--RTISDDAK 254

Query: 483 RLVAKLLENDPSDRPSAE 500
            L+ K+L   PS R +A 
Sbjct: 255 DLIRKMLTFHPSLRITAT 272

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384

 Score = 75.8 bits (187), Expect = 6e-15
 Identities = 66/276 (23%), Positives = 104/276 (37%), Gaps = 77/276 (27%)

Query: 240 LKAMSKELLPLRKPLR--LNEDMLMNSVENLPPHPNVVVMHFAF---------TDFVPSI 288
           +K M+K+    R  +R    E  +M  +E    HP +V + ++F          D +   
Sbjct: 45  MKYMNKQKCVERNEVRNVFKELQIMQGLE----HPFLVNLWYSFQDEEDMFMVVDLLL-- 98

Query: 289 PDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFT- 347
                             GG                DLR +L+ +       E V LF  
Sbjct: 99  ------------------GG----------------DLRYHLQ-QNVHFKE-ETVKLFIC 122

Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
           +L+  + +L   R  HRD+K DNILLD    +    + ITDF  +       +   + A 
Sbjct: 123 ELVMALDYLQNQRIIHRDMKPDNILLD-EHGH----VHITDFNIAAMLPRE-TQITTMA- 175

Query: 408 IELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYE-IFGHDNPFYQSARNTDY 465
               G    MAPE+  +  G      YS + D W+ G  AYE + G   P++  +  +  
Sbjct: 176 ----GTKPYMAPEMFSSRKG----AGYSFAVDWWSLGVTAYELLRGR-RPYHIRSSTSSK 226

Query: 466 E-----VNALPQLNTNVPEVMRRLVAKLLENDPSDR 496
           E        +    +   + M  L+ KLLE +P  R
Sbjct: 227 EIVHTFETTVVTYPSAWSQEMVSLLKKLLEPNPDQR 262

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 74.2 bits (183), Expect = 7e-15
 Identities = 64/315 (20%), Positives = 106/315 (33%), Gaps = 82/315 (26%)

Query: 199 QIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRL 256
            +   I +G+   V  A  +   +  A K             I K   +++   +     
Sbjct: 12  TLENTIGRGSWGEVKIAVQKGTRIRRAAKK------------IPKYFVEDVDRFK----- 54

Query: 257 NEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLF 316
            E  +M S++    HPN++ ++  F D       ++ IY   L   L  TGG      LF
Sbjct: 55  QEIEIMKSLD----HPNIIRLYETFED-------NTDIY---LVMEL-CTGG-----ELF 94

Query: 317 --ILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLD 374
             ++ K+          E  A         +   +L  V + +    AHRDLK +N L  
Sbjct: 95  ERVVHKRVFR-------ESDAAR-------IMKDVLSAVAYCHKLNVAHRDLKPENFLFL 140

Query: 375 CSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY 434
               ++   L + DFG +   K G  M+         G    ++P+V            Y
Sbjct: 141 TDSPDS--PLKLIDFGLAARFKPGKMMR------TKVGTPYYVSPQVLEG--------LY 184

Query: 435 SKS-DAWTAGTVAYEIFGHDNPFY--------QSARNTDYEVNALPQLNTNVPEVMRRLV 485
               D W+AG + Y +     PF            R   +          NV      L+
Sbjct: 185 GPECDEWSAGVMMYVLLCGYPPFSAPTDSEVMLKIREGTFTFPEKDW--LNVSPQAESLI 242

Query: 486 AKLLENDPSDRPSAE 500
            +LL   P  R ++ 
Sbjct: 243 RRLLTKSPKQRITSL 257

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 75.4 bits (186), Expect = 7e-15
 Identities = 68/335 (20%), Positives = 123/335 (36%), Gaps = 95/335 (28%)

Query: 191 DDVKVDDI-QIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKA-MSKE 246
           DDV  +D+ ++ + I KG  +VV     R  G ++A+K+            +  A  +  
Sbjct: 18  DDVLFEDVYELCEVIGKGPFSVVRRCINRETGQQFAVKI------------VDVAKFTSS 65

Query: 247 LLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAF---------TDFVPSIPDSSLIYPS 297
                + L+  E  + + ++    HP++V +   +          +F+            
Sbjct: 66  PGLSTEDLK-REASICHMLK----HPHIVELLETYSSDGMLYMVFEFM------------ 108

Query: 298 ALPARLNPTGGYGRNMSLF--ILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTH 355
                    G       L   I+ +    D      E  A   M        Q+LE + +
Sbjct: 109 --------DGA-----DLCFEIVKRA---DAGFVYSEAVASHYMR-------QILEALRY 145

Query: 356 LNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG-SSYTNKSGLSMQYSSADIELGGNV 414
            + +   HRD+K   +LL  S++N+ P + +  FG +    +SGL            G  
Sbjct: 146 CHDNNIIHRDVKPHCVLLA-SKENSAP-VKLGGFGVAIQLGESGLVAG------GRVGTP 197

Query: 415 ALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEI-------FGHDNP-FYQSARNTDY 465
             MAPEV    P       Y K  D W  G + + I       F       ++      Y
Sbjct: 198 HFMAPEVVKREP-------YGKPVDVWGCGVILF-ILLSGCLPFYGTKERLFEGIIKGKY 249

Query: 466 EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
           ++N   Q + ++ E  + LV ++L  DP++R +  
Sbjct: 250 KMNP-RQWS-HISESAKDLVRRMLMLDPAERITVY 282

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 75.0 bits (185), Expect = 7e-15
 Identities = 51/326 (15%), Positives = 97/326 (29%), Gaps = 104/326 (31%)

Query: 199 QIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRL 256
            I + + +G   +V+          Y  K +            +K   + L+        
Sbjct: 8   MIAEDLGRGEFGIVHRCVETSSKKTYMAKFV-----------KVKGTDQVLV-------K 49

Query: 257 NEDMLMNSVENLPPHPNVVVMHFAF---------TDFVPSIPDSSLIYPSALPARLNPTG 307
            E  ++N       H N++ +H +F          +F+                    +G
Sbjct: 50  KEISILNIAR----HRNILHLHESFESMEELVMIFEFI--------------------SG 85

Query: 308 GYGRNMSLF--ILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRD 365
                  +F  I    +       L ER         V    Q+ E +  L+ H   H D
Sbjct: 86  L-----DIFERINTSAFE------LNEREI-------VSYVHQVCEALQFLHSHNIGHFD 127

Query: 366 LKSDNILLDCSEDNTCPQLVITDFGSS--YTNKSGLSMQYSSADIELGGNVALMAPEVAL 423
           ++ +NI+      +    + I +FG +          + +++ +          APEV  
Sbjct: 128 IRPENIIYQTRRSS---TIKIIEFGQARQLKPGDNFRLLFTAPE--------YYAPEVHQ 176

Query: 424 ATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLN-------- 474
                      S + D W+ GT+ Y +    NPF   A      +  +            
Sbjct: 177 HDV-------VSTATDMWSLGTLVYVLLSGINPFL--AETNQQIIENIMNAEYTFDEEAF 227

Query: 475 TNVPEVMRRLVAKLLENDPSDRPSAE 500
             +       V +LL  +   R +A 
Sbjct: 228 KEISIEAMDFVDRLLVKERKSRMTAS 253

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score = 73.8 bits (182), Expect = 1e-14
 Identities = 61/321 (19%), Positives = 103/321 (32%), Gaps = 90/321 (28%)

Query: 193 VKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPL 250
            + +D + GK + +G+ + V  A       EYA+K++                 K  +  
Sbjct: 27  KRPEDFKFGKILGEGSFSTVVLARELATSREYAIKIL----------------EKRHIIK 70

Query: 251 RKPLR--LNEDMLMNSVENLPPHPNVVVMHFAF---------TDFVPSIPDSSLIYPSAL 299
              +     E  +M+ ++    HP  V ++F F           +               
Sbjct: 71  ENKVPYVTRERDVMSRLD----HPFFVKLYFTFQDDEKLYFGLSYAK------------- 113

Query: 300 PARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMH 359
                   G      L   ++K  +       E C +    E V         + +L+  
Sbjct: 114 -------NG-----ELLKYIRKIGS-----FDETCTRFYTAEIVS-------ALEYLHGK 149

Query: 360 RTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAP 419
              HRDLK +NILL+         + ITDFG++   K        +      G    ++P
Sbjct: 150 GIIHRDLKPENILLNEDM-----HIQITDFGTA---KVLSPESKQARANSFVGTAQYVSP 201

Query: 420 EVALATPGLFSFVNYSKS-DAWTAGTVAYE-IFGHDNPFYQSARNTDYE--VNALPQLNT 475
           E+              KS D W  G + Y+ + G   PF        ++  +        
Sbjct: 202 ELLTEKS-------ACKSSDLWALGCIIYQLVAGLP-PFRAGNEYLIFQKIIKLEYDFPE 253

Query: 476 NVPEVMRRLVAKLLENDPSDR 496
                 R LV KLL  D + R
Sbjct: 254 KFFPKARDLVEKLLVLDATKR 274

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 73.6 bits (181), Expect = 2e-14
 Identities = 45/350 (12%), Positives = 103/350 (29%), Gaps = 99/350 (28%)

Query: 192 DVKVDDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLR 251
           D  ++D +I + + +G    +         YALK     S         K+ + ++    
Sbjct: 27  DKYINDYRIIRTLNQGKFNKIILCEKDNKFYALKKYEK-SLLEKKRDFTKSNNDKISIKS 85

Query: 252 KPLRL-NEDMLMNSVENLPPHPNVVVMHFAFTD---------FVPSIPDSSLIYPSALPA 301
           K     NE  ++  ++    +   +      T+         ++                
Sbjct: 86  KYDDFKNELQIITDIK----NEYCLTCEGIITNYDEVYIIYEYME--------------- 126

Query: 302 RLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRT 361
                       S+     K++       +     + +     +   +L   ++++  + 
Sbjct: 127 -----ND-----SIL----KFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEKN 172

Query: 362 -AHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGL------SMQYSSADIELGGNV 414
             HRD+K  NIL+D  ++    ++ ++DFG S             + ++           
Sbjct: 173 ICHRDVKPSNILMD--KNG---RVKLSDFGESEYMVDKKIKGSRGTYEF----------- 216

Query: 415 ALMAPEVALATPGLFSFVNYS--KSDAWTAGTVAYEI------FGHDN------------ 454
             M PE         +  +Y+  K D W+ G   Y +      F                
Sbjct: 217 --MPPEF------FSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKISLVELFNNIRTK 268

Query: 455 ----PFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
               P  ++              N  +       +   L  +P++R ++E
Sbjct: 269 NIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKNPAERITSE 318

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 74.3 bits (183), Expect = 2e-14
 Identities = 70/321 (21%), Positives = 111/321 (34%), Gaps = 90/321 (28%)

Query: 199 QIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRL 256
           Q+ + + KG  +VV        G EYA  +            I           +K    
Sbjct: 14  QLFEELGKGAFSVVRRCVKVLAGQEYAAMI------------INT---------KKLSAR 52

Query: 257 NEDMLMNSVENLP--PHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMS 314
           +   L           HPN+V +H + ++           Y   L   L  TGG      
Sbjct: 53  DHQKLEREARICRLLKHPNIVRLHDSISE-------EGHHY---LIFDL-VTGG-----E 96

Query: 315 LF--ILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNIL 372
           LF  I+ ++Y +       E  A            Q+LE V H +     HR+LK +N+L
Sbjct: 97  LFEDIVAREYYS-------EADA-------SHCIQQILEAVLHCHQMGVVHRNLKPENLL 142

Query: 373 LDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNV---ALMAPEVALATPGLF 429
           L          + + DF        GL+++         G       ++PEV    P   
Sbjct: 143 LASKLKGA--AVKLADF--------GLAIEVEGEQQAWFGFAGTPGYLSPEVLRKDP--- 189

Query: 430 SFVNYSKS-DAWTAGTVAYEI-------FGHDNP--FYQSARNTDYEVNALPQLNTNVPE 479
               Y K  D W  G + Y I       F  ++    YQ  +   Y+  + P+ +  V  
Sbjct: 190 ----YGKPVDLWACGVILY-ILLVGYPPFWDEDQHRLYQQIKAGAYDFPS-PEWD-TVTP 242

Query: 480 VMRRLVAKLLENDPSDRPSAE 500
             + L+ K+L  +PS R +A 
Sbjct: 243 EAKDLINKMLTINPSKRITAA 263

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 73.1 bits (180), Expect = 3e-14
 Identities = 65/333 (19%), Positives = 105/333 (31%), Gaps = 115/333 (34%)

Query: 201 GKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNE 258
            K + +G+ ++  +   +     +A+K+            I K M              E
Sbjct: 16  DKPLGEGSFSICRKCVHKKSNQAFAVKI------------ISKRM--------------E 49

Query: 259 DMLMNSVE---NLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSL 315
                 +        HPN+V +H  F D           +   L   L   GG      L
Sbjct: 50  ANTQKEITALKLCEGHPNIVKLHEVFHD-------QLHTF---LVMEL-LNGG-----EL 93

Query: 316 F--ILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
           F  I  KK+ +       E  A   M        +L+  V+H++     HRDLK +N+L 
Sbjct: 94  FERIKKKKHFS-------ETEASYIMR-------KLVSAVSHMHDVGVVHRDLKPENLLF 139

Query: 374 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELG---GNVALMAPEVALATPGLFS 430
               DN   ++ I DF        G +      +  L      +   APE+         
Sbjct: 140 TDENDN--LEIKIIDF--------GFARLKPPDNQPLKTPCFTLHYAAPELLNQNG---- 185

Query: 431 FVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRR------ 483
              Y +S D W+ G + Y +     PF    R+            T+  E+M++      
Sbjct: 186 ---YDESCDLWSLGVILYTMLSGQVPFQSHDRSLT---------CTSAVEIMKKIKKGDF 233

Query: 484 ----------------LVAKLLENDPSDRPSAE 500
                           L+  LL  DP+ R    
Sbjct: 234 SFEGEAWKNVSQEAKDLIQGLLTVDPNKRLKMS 266

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 72.6 bits (179), Expect = 3e-14
 Identities = 65/317 (20%), Positives = 117/317 (36%), Gaps = 83/317 (26%)

Query: 199 QIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRL 256
            + + + KG  +VV     +  G+E+A K++                + + L  R   +L
Sbjct: 9   DVKEELGKGAFSVVRRCVHKTTGLEFAAKII----------------NTKKLSARDFQKL 52

Query: 257 -NEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSL 315
             E  +   ++    HPN+V +H +  +        S  Y   L   L  TGG      L
Sbjct: 53  EREARICRKLQ----HPNIVRLHDSIQE-------ESFHY---LVFDL-VTGG-----EL 92

Query: 316 F--ILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
           F  I+ +++ +       E  A            Q+LE + + + +   HR+LK +N+LL
Sbjct: 93  FEDIVAREFYS-------EADA-------SHCIQQILESIAYCHSNGIVHRNLKPENLLL 138

Query: 374 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN 433
                     + + DFG +       +           G    ++PEV    P       
Sbjct: 139 ASKAKGA--AVKLADFGLAIEVNDSEAWH------GFAGTPGYLSPEVLKKDP------- 183

Query: 434 YSKS-DAWTAGTVAYEI-------FGHDNP--FYQSARNTDYEVNALPQLNTNVPEVMRR 483
           YSK  D W  G + Y I       F  ++    Y   +   Y+  + P+ +  V    + 
Sbjct: 184 YSKPVDIWACGVILY-ILLVGYPPFWDEDQHRLYAQIKAGAYDYPS-PEWD-TVTPEAKS 240

Query: 484 LVAKLLENDPSDRPSAE 500
           L+  +L  +P  R +A+
Sbjct: 241 LIDSMLTVNPKKRITAD 257

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score = 73.1 bits (180), Expect = 3e-14
 Identities = 71/366 (19%), Positives = 110/366 (30%), Gaps = 118/366 (32%)

Query: 170 IRHAVNNMFDKLVQVETLPDVDDVKVDDI-QIGK-FIAKGTNAVVYEATFR--GVEYALK 225
           + H  ++    L  +   P+     V D  Q+ K  +  G N  V E   R  G + ALK
Sbjct: 1   MAHHHHHHSSGLEVLFQGPEPKKYAVTDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALK 60

Query: 226 MMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFV 285
           +            +             P    E             P++V +   + +  
Sbjct: 61  L------------LYD----------SPKARQEVDHHWQASG---GPHIVCILDVYENMH 95

Query: 286 PSIPDSSLIYPSALPARLNPTGGYGRNMSLF--ILMKKYNTDLRNYLRERCAQLSMHERV 343
                  +I            GG      LF  I  +           ER A   M    
Sbjct: 96  HGKRCLLIIMECM-------EGG-----ELFSRIQERGDQ-----AFTEREAAEIMR--- 135

Query: 344 LLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGL---- 399
                +   +  L+ H  AHRD+K +N+L    E +    L +TDFG +           
Sbjct: 136 ----DIGTAIQFLHSHNIAHRDVKPENLLYTSKEKDA--VLKLTDFGFAKETTQNALQTP 189

Query: 400 --SMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPF 456
             +  Y             +APEV            Y KS D W+ G + Y +     PF
Sbjct: 190 CYTPYY-------------VAPEVLGPEK-------YDKSCDMWSLGVIMYILLCGFPPF 229

Query: 457 YQSARNTDYEVNALPQLNTNVPEVMRR----------------------LVAKLLENDPS 494
           Y    NT   ++         P + RR                      L+  LL+ DP+
Sbjct: 230 Y---SNTGQAIS---------PGMKRRIRLGQYGFPNPEWSEVSEDAKQLIRLLLKTDPT 277

Query: 495 DRPSAE 500
           +R +  
Sbjct: 278 ERLTIT 283

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 73.6 bits (181), Expect = 3e-14
 Identities = 68/327 (20%), Positives = 112/327 (34%), Gaps = 101/327 (30%)

Query: 197 DIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPL 254
            +   + +  G    V++      G++ A K+            I     K+     K  
Sbjct: 90  TVSKTEILGGGRFGQVHKCEETATGLKLAAKI------------IKTRGMKD-----KEE 132

Query: 255 RLNEDMLMNSVENLPPHPNVVVMHFAF---------TDFVPSIPDSSLIYPSALPARLNP 305
             NE  +MN ++    H N++ ++ AF          ++V                    
Sbjct: 133 VKNEISVMNQLD----HANLIQLYDAFESKNDIVLVMEYV-------------------- 168

Query: 306 TGGYGRNMSLF--ILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAH 363
            GG      LF  I+ + YN      L E          +L   Q+ EG+ H++     H
Sbjct: 169 DGG-----ELFDRIIDESYN------LTELDT-------ILFMKQICEGIRHMHQMYILH 210

Query: 364 RDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVAL 423
            DLK +NIL    +     Q+ I DFG +   K    ++         G    +APEV  
Sbjct: 211 LDLKPENILCVNRDAK---QIKIIDFGLARRYKPREKLK------VNFGTPEFLAPEVVN 261

Query: 424 ATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYEV-NALPQLN------- 474
                      S   D W+ G +AY +    +PF     + D E  N +           
Sbjct: 262 YDF-------VSFPTDMWSVGVIAYMLLSGLSPFL---GDNDAETLNNILACRWDLEDEE 311

Query: 475 -TNVPEVMRRLVAKLLENDPSDRPSAE 500
             ++ E  +  ++KLL  + S R SA 
Sbjct: 312 FQDISEEAKEFISKLLIKEKSWRISAS 338

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 73.2 bits (180), Expect = 3e-14
 Identities = 64/328 (19%), Positives = 114/328 (34%), Gaps = 76/328 (23%)

Query: 182 VQVETLPDVDDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAI 239
           V++E L   +            +  G    V+ A  +    E  +K +           +
Sbjct: 10  VELEGLAACEGEYSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFI-------KKEKV 62

Query: 240 LKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSAL 299
           L+    E   L K     E  +++ VE    H N++ +     D      +         
Sbjct: 63  LEDCWIEDPKLGKVTL--EIAILSRVE----HANIIKVL----DI---FENQGFFQ---- 105

Query: 300 PARLNPTGGYGRNMSLFILMKKYNT--DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLN 357
                            ++M+K+ +  DL  ++     +L       +F QL+  V +L 
Sbjct: 106 -----------------LVMEKHGSGLDLFAFIDRH-PRLDEPLASYIFRQLVSAVGYLR 147

Query: 358 MHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALM 417
           +    HRD+K +NI++   +      + + DFGS+   + G             G +   
Sbjct: 148 LKDIIHRDIKDENIVIA-EDFT----IKLIDFGSAAYLERGKLFYTFC------GTIEYC 196

Query: 418 APEVALATPGLFSFVNY--SKSDAWTAGTVAYE-IFGHDNPFYQSARNTDYE--VNALPQ 472
           APEV +  P       Y   + + W+ G   Y  +F   NPF       + E  V A   
Sbjct: 197 APEVLMGNP-------YRGPELEMWSLGVTLYTLVFEE-NPFC------ELEETVEAAIH 242

Query: 473 LNTNVPEVMRRLVAKLLENDPSDRPSAE 500
               V + +  LV+ LL+  P  R + E
Sbjct: 243 PPYLVSKELMSLVSGLLQPVPERRTTLE 270

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 73.4 bits (181), Expect = 3e-14
 Identities = 75/394 (19%), Positives = 126/394 (31%), Gaps = 131/394 (33%)

Query: 128 KTLQQLL--YKDNSKPFLAFVGVSLASGTGILTKEDEFEGVCWEIRHAVNNMFDKLVQVE 185
            ++  L+       +P     GV L      + K+       W + H             
Sbjct: 76  PSIPLLIDHLLSTQQPLTKKSGVVLHRA---VPKDK------WVLNH------------- 113

Query: 186 TLPDVDDVKVDDIQIGKFIAKGTNAVVYEATFRG--VEYALKMMFNYSAASNSHAILKAM 243
                     +D+ +G+ I +G    V+    R      A+K                  
Sbjct: 114 ----------EDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSC---------------- 147

Query: 244 SKELLPLRKPLR-LNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPAR 302
            +E LP     + L E  ++        HPN+V                          R
Sbjct: 148 -RETLPPDLKAKFLQEARILKQYS----HPNIV--------------------------R 176

Query: 303 LNPTGGYG---RNMSLFI---LMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHL 356
           L      G   +   ++I   L++    D   +LR   A+L +   + +      G+ +L
Sbjct: 177 L-----IGVCTQKQPIYIVMELVQ--GGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYL 229

Query: 357 NMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVAL 416
                 HRDL + N L+  +E N      I+DFG S     G    Y+++    GG   +
Sbjct: 230 ESKCCIHRDLAARNCLV--TEKNVLK---ISDFGMSREEADG---VYAAS----GGLRQV 277

Query: 417 ----MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQ 472
                APE      G +S    S+SD W+ G + +E F      Y +  N          
Sbjct: 278 PVKWTAPEALNY--GRYS----SESDVWSFGILLWETFSLGASPYPNLSNQQ----TREF 327

Query: 473 LNT--------NVPEVMRRLVAKLLENDPSDRPS 498
           +            P+ + RL+ +    +P  RPS
Sbjct: 328 VEKGGRLPCPELCPDAVFRLMEQCWAYEPGQRPS 361

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score = 73.6 bits (181), Expect = 4e-14
 Identities = 65/354 (18%), Positives = 106/354 (29%), Gaps = 123/354 (34%)

Query: 182 VQVETLPDVDDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAI 239
           +Q++    +DD KV    +G     G N  V +   +    ++ALKM+ +   A     +
Sbjct: 52  LQIKKNAIIDDYKVTSQVLGL----GINGKVLQIFNKRTQEKFALKMLQDCPKARREVEL 107

Query: 240 LKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSAL 299
               S+                          P++V +   + +         ++     
Sbjct: 108 HWRASQ-------------------------CPHIVRIVDVYENLYAGRKCLLIVMECL- 141

Query: 300 PARLNPTGGYGRNMSLF--ILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLN 357
                  GG      LF  I  +           ER A   M         + E + +L+
Sbjct: 142 ------DGG-----ELFSRIQDRGDQ-----AFTEREASEIMK-------SIGEAIQYLH 178

Query: 358 MHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQ-------YSSADIEL 410
               AHRD+K +N+L      N    L +TDFG +    S  S+        Y       
Sbjct: 179 SINIAHRDVKPENLLYTSKRPNAI--LKLTDFGFAKETTSHNSLTTPCYTPYY------- 229

Query: 411 GGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFY-QSARNTDYEVN 468
                 +APEV            Y KS D W+ G + Y +     PFY            
Sbjct: 230 ------VAPEVLGPEK-------YDKSCDMWSLGVIMYILLCGYPPFYSNHGLAIS---- 272

Query: 469 ALPQLNTNVPEVMRR----------------------LVAKLLENDPSDRPSAE 500
                    P +  R                      L+  LL+ +P+ R +  
Sbjct: 273 ---------PGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTIT 317

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* Length = 299

 Score = 71.6 bits (176), Expect = 7e-14
 Identities = 59/337 (17%), Positives = 101/337 (29%), Gaps = 104/337 (30%)

Query: 179 DKLVQVETLPDVDDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNS 236
              +Q++    +DD KV      + +  G N  V +   +    ++ALKM+ +   A   
Sbjct: 5   KSGLQIKKNAIIDDYKV----TSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARRE 60

Query: 237 HAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYP 296
             +    S+                          P++V +   + +         ++  
Sbjct: 61  VELHWRASQ-------------------------CPHIVRIVDVYENLYAGRKCLLIVME 95

Query: 297 SALPARLNPTGGYGRNMSLF--ILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVT 354
                     GG      LF  I  +           ER A   M         + E + 
Sbjct: 96  CL-------DGG-----ELFSRIQDRGDQ-----AFTEREASEIMK-------SIGEAIQ 131

Query: 355 HLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNV 414
           +L+    AHRD+K +N+L      N    L +TDFG                        
Sbjct: 132 YLHSINIAHRDVKPENLLYTSKRPNA--ILKLTDFG------------------------ 165

Query: 415 ALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFY-QSARNTDYEV----- 467
              A E             Y KS D W+ G + Y +     PFY          +     
Sbjct: 166 --FAKET-TGE-------KYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIR 215

Query: 468 NALPQLNT----NVPEVMRRLVAKLLENDPSDRPSAE 500
               +        V E ++ L+  LL+ +P+ R +  
Sbjct: 216 MGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTIT 252

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 73.4 bits (180), Expect = 8e-14
 Identities = 46/238 (19%), Positives = 83/238 (34%), Gaps = 59/238 (24%)

Query: 271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY--NTDLRN 328
           HP++V +     +FV                          +   +I+M+ Y     L+ 
Sbjct: 138 HPSIVQIF----NFVE-------------------HTDRHGDPVGYIVME-YVGGQSLKR 173

Query: 329 YLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITD 388
              ++   L + E +    ++L  +++L+     + DLK +NI+L   E+    QL + D
Sbjct: 174 SKGQK---LPVAEAIAYLLEILPALSYLHSIGLVYNDLKPENIMLT--EE----QLKLID 224

Query: 389 FG-SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAY 447
            G  S  N  G             G     APE+    P          +D +T G    
Sbjct: 225 LGAVSRINSFGYLY----------GTPGFQAPEIVRTGPT-------VATDIYTVGRTLA 267

Query: 448 EIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS--AELAA 503
            +         + R  D      P L     +   RL+ + ++ DP  R +   E++A
Sbjct: 268 ALTLDLPTR--NGRYVDGLPEDDPVL--KTYDSYGRLLRRAIDPDPRQRFTTAEEMSA 321

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 71.5 bits (176), Expect = 9e-14
 Identities = 64/328 (19%), Positives = 107/328 (32%), Gaps = 106/328 (32%)

Query: 201 GKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNE 258
            K + +G  AVV +   +  G EYA K             + K         R+  +   
Sbjct: 34  SKELGRGKFAVVRQCISKSTGQEYAAKF------------LKK---------RRRGQDCR 72

Query: 259 DMLMNSVE---NLPPHPNVVVMHFAF---------TDFVPSIPDSSLIYPSALPARLNPT 306
             +++ +         P V+ +H  +          ++                      
Sbjct: 73  AEILHEIAVLELAKSCPRVINLHEVYENTSEIILILEYA--------------------A 112

Query: 307 GGYGRNMSLF--ILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHR 364
           GG      +F   L +         + E          + L  Q+LEGV +L+ +   H 
Sbjct: 113 GG-----EIFSLCLPELAE-----MVSENDV-------IRLIKQILEGVYYLHQNNIVHL 155

Query: 365 DLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALA 424
           DLK  NILL          + I DFG S        ++      E+ G    +APE+   
Sbjct: 156 DLKPQNILLSSIYPL--GDIKIVDFGMSRKIGHACELR------EIMGTPEYLAPEILNY 207

Query: 425 TPGLFSFVNYSKS-DAWTAGTVAYEI-------FGHDNP---FYQ-SARNTDYEVNALPQ 472
            P        + + D W  G +AY +       F  ++    +   S  N DY       
Sbjct: 208 DP-------ITTATDMWNIGIIAY-MLLTHTSPFVGEDNQETYLNISQVNVDYSEETFS- 258

Query: 473 LNTNVPEVMRRLVAKLLENDPSDRPSAE 500
              +V ++    +  LL  +P  RP+AE
Sbjct: 259 ---SVSQLATDFIQSLLVKNPEKRPTAE 283

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 71.6 bits (176), Expect = 1e-13
 Identities = 65/316 (20%), Positives = 114/316 (36%), Gaps = 81/316 (25%)

Query: 199 QIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRL 256
            + + + KG  +VV     +  G+E+A K+            I     K+L         
Sbjct: 32  DVKEELGKGAFSVVRRCVHKTTGLEFAAKI------------INT---KKLSARDFQKLE 76

Query: 257 NEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLF 316
            E  +   ++    HPN+V +H +  +        S  Y   L   L  TGG      LF
Sbjct: 77  REARICRKLQ----HPNIVRLHDSIQE-------ESFHY---LVFDL-VTGG-----ELF 116

Query: 317 --ILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLD 374
             I+ +++ +       E  A            Q+LE + + + +   HR+LK +N+LL 
Sbjct: 117 EDIVAREFYS-------EADA-------SHCIQQILESIAYCHSNGIVHRNLKPENLLLA 162

Query: 375 CSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY 434
                    + + DFG +       +           G    ++PEV    P       Y
Sbjct: 163 SKAKGA--AVKLADFGLAIEVNDSEAWH------GFAGTPGYLSPEVLKKDP-------Y 207

Query: 435 SKS-DAWTAGTVAYEI-------FGHDNP--FYQSARNTDYEVNALPQLNTNVPEVMRRL 484
           SK  D W  G + Y I       F  ++    Y   +   Y+  + P+ +  V    + L
Sbjct: 208 SKPVDIWACGVILY-ILLVGYPPFWDEDQHRLYAQIKAGAYDYPS-PEWD-TVTPEAKSL 264

Query: 485 VAKLLENDPSDRPSAE 500
           +  +L  +P  R +A+
Sbjct: 265 IDSMLTVNPKKRITAD 280

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 70.3 bits (173), Expect = 2e-13
 Identities = 39/201 (19%), Positives = 74/201 (36%), Gaps = 49/201 (24%)

Query: 324 TDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQ 383
             L  Y+      LS+   +    Q+L+G+ H +  R  HRD+K  NIL+D   +     
Sbjct: 96  PTLSEYIESH-GPLSVDTAINFTNQILDGIKHAHDMRIVHRDIKPQNILID--SNK---T 149

Query: 384 LVITDFG------SSYTNKSGLSMQYSSADIELGGNVALMAPEVA---LATPGLFSFVNY 434
           L I DFG       +   ++   +          G V   +PE A               
Sbjct: 150 LKIFDFGIAKALSETSLTQTNHVL----------GTVQYFSPEQAKGEATDE-------- 191

Query: 435 SKSDAWTAGTVAYEI------FGHDNPF---YQSARNTDYEVNALP-QLNTNVPEVMRRL 484
             +D ++ G V YE+      F  +       +  ++    V  +   +  ++P+ +  +
Sbjct: 192 -CTDIYSIGIVLYEMLVGEPPFNGETAVSIAIKHIQD---SVPNVTTDVRKDIPQSLSNV 247

Query: 485 VAKLLENDPSDRPS--AELAA 503
           + +  E D ++R     E+  
Sbjct: 248 ILRATEKDKANRYKTIQEMKD 268

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 69.9 bits (172), Expect = 2e-13
 Identities = 60/322 (18%), Positives = 106/322 (32%), Gaps = 101/322 (31%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILK--AMSKELLPLRKP 253
            ++++ + I KG    V    +RG + A+K              +K  A ++  L     
Sbjct: 21  KELKLLQTIGKGEFGDVMLGDYRGNKVAVKC-------------IKNDATAQAFL----- 62

Query: 254 LRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNM 313
               E  +M  +     H N+V +     +    +                         
Sbjct: 63  ---AEASVMTQLR----HSNLVQLLGVIVEEKGGL------------------------- 90

Query: 314 SLFI---LMKKYNTDLRNYLRERCAQ-LSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSD 369
             +I    M      L +YLR R    L     +     + E + +L  +   HRDL + 
Sbjct: 91  --YIVTEYMA--KGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAAR 146

Query: 370 NILLDCSEDNTCPQLVITDFGSS---YTNKSGLSMQYSSADIELGGNVAL--MAPEVALA 424
           N+L+  SEDN      ++DFG +    + +               G + +   APE    
Sbjct: 147 NVLV--SEDNVAK---VSDFGLTKEASSTQDT-------------GKLPVKWTAPEALRE 188

Query: 425 TPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNT--------N 476
               FS    +KSD W+ G + +EI+      Y      D     +P++           
Sbjct: 189 --KKFS----TKSDVWSFGILLWEIYSFGRVPYPRIPLKD----VVPRVEKGYKMDAPDG 238

Query: 477 VPEVMRRLVAKLLENDPSDRPS 498
            P  +  ++      D + RPS
Sbjct: 239 CPPAVYEVMKNCWHLDAAMRPS 260

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} Length = 412

 Score = 71.3 bits (175), Expect = 2e-13
 Identities = 69/325 (21%), Positives = 116/325 (35%), Gaps = 87/325 (26%)

Query: 193 VKVDDIQIGKFIAKGTNAVVYEATFRGVE--YALKMMFNYSAASNSHAILKAMSKELLPL 250
           ++ DD +I K I +G  + V     +     YA+K+M                +K  +  
Sbjct: 58  LQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIM----------------NKWDMLK 101

Query: 251 RKPLR--LNEDMLMNSVENLPPHPNVVVMHFAF---------TDFVPSIPDSSLIYPSAL 299
           R  +     E  ++ + +       +  +HFAF          ++               
Sbjct: 102 RGEVSCFREERDVLVNGD----RRWITQLHFAFQDENYLYLVMEYYV------------- 144

Query: 300 PARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMH 359
                  GG      L  L+ K+       +    A+  + E V+        +  ++  
Sbjct: 145 -------GG-----DLLTLLSKFG----ERIPAEMARFYLAEIVM-------AIDSVHRL 181

Query: 360 RTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAP 419
              HRD+K DNILLD         + + DFGS    ++  +++   A     G    ++P
Sbjct: 182 GYVHRDIKPDNILLDRCG-----HIRLADFGSCLKLRADGTVRSLVA----VGTPDYLSP 232

Query: 420 EVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNA-----LP 471
           E+  A  G     +Y    D W  G  AYE+F    PFY  +    Y   V+      LP
Sbjct: 233 EILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADSTAETYGKIVHYKEHLSLP 292

Query: 472 QLNTNVPEVMRRLVAKLLENDPSDR 496
            ++  VPE  R  + +LL   P  R
Sbjct: 293 LVDEGVPEEARDFIQRLL-CPPETR 316

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 69.4 bits (170), Expect = 5e-13
 Identities = 33/164 (20%), Positives = 62/164 (37%), Gaps = 27/164 (16%)

Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
           Q LEG+ +L+  R  H D+K+DN+LL     +   +  + DFG +   +     +     
Sbjct: 158 QALEGLEYLHTRRILHGDVKADNVLL----SSDGSRAALCDFGHALCLQPDGLGKSLLTG 213

Query: 408 IELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTDYE 466
             + G    MAPEV +  P          K D W++  +   +    +P+ Q      + 
Sbjct: 214 DYIPGTETHMAPEVVMGKP-------CDAKVDIWSSCCMMLHMLNGCHPWTQ-----YFR 261

Query: 467 VNAL----------PQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
                          ++  +   +  + + + L  +P  R SA 
Sbjct: 262 GPLCLKIASEPPPIREIPPSCAPLTAQAIQEGLRKEPVHRASAM 305

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 70.6 bits (173), Expect = 5e-13
 Identities = 70/393 (17%), Positives = 114/393 (29%), Gaps = 124/393 (31%)

Query: 129 TLQQLL--YKDNSKPFLAFVGVSLASGTGILTKEDEFEGVCWEIRHAVNNMFDKLVQVET 186
           TL +L+  +   +   +  +                     WE+                
Sbjct: 174 TLAELVHHHSTVADGLITTLHYPAPKRNKPTIYGVSPNYDKWEMER-------------- 219

Query: 187 LPDVDDVKVDDIQIGKFIAKGTNAVVYEATFRGVEY--ALKMMFNYSAASNSHAILKAMS 244
                     DI +   +  G    VYE  ++      A+K +               M 
Sbjct: 220 ---------TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-----------DTME 259

Query: 245 KELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLN 304
            E         L E  +M  ++    HPN+V +    T   P                  
Sbjct: 260 VEEF-------LKEAAVMKEIK----HPNLVQLLGVCTREPP------------------ 290

Query: 305 PTGGYGRNMSLFI---LMKKYNTDLRNYLRER-CAQLSMHERVLLFTQLLEGVTHLNMHR 360
                      +I    M     +L +YLRE    ++S    + + TQ+   + +L    
Sbjct: 291 ----------FYIITEFMT--YGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKN 338

Query: 361 TAHRDLKSDNILLDCSEDNTCPQLVITDFG-------SSYTNKSGLSMQYSSADIELGGN 413
             HR+L + N L+   E++      + DFG        +YT  +G               
Sbjct: 339 FIHRNLAARNCLV--GENHLVK---VADFGLSRLMTGDTYTAHAGAKFPIK--------- 384

Query: 414 VALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQL 473
               APE        FS     KSD W  G + +EI  +    Y     +         L
Sbjct: 385 --WTAPESL--AYNKFS----IKSDVWAFGVLLWEIATYGMSPYPGIDLSQ----VYELL 432

Query: 474 N--------TNVPEVMRRLVAKLLENDPSDRPS 498
                       PE +  L+    + +PSDRPS
Sbjct: 433 EKDYRMERPEGCPEKVYELMRACWQWNPSDRPS 465

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 68.4 bits (168), Expect = 6e-13
 Identities = 59/322 (18%), Positives = 115/322 (35%), Gaps = 97/322 (30%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFRG-VEYALKMMFNYSAASNSHAILK--AMSKELLPLRK 252
            ++   + I  G   +V+   +    + A+K              ++  AMS+E      
Sbjct: 8   SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKT-------------IREGAMSEEDF---- 50

Query: 253 PLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYG-- 310
              + E  +M  +     HP +V                          +L     YG  
Sbjct: 51  ---IEEAEVMMKLS----HPKLV--------------------------QL-----YGVC 72

Query: 311 -RNMSLFI---LMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDL 366
                + +    M+  +  L +YLR +    +    + +   + EG+ +L      HRDL
Sbjct: 73  LEQAPICLVTEFME--HGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDL 130

Query: 367 KSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVAL--MAPEVALA 424
            + N L+   E+       ++DFG +   +  L  QY+S+    G    +   +PEV   
Sbjct: 131 AARNCLV--GENQVIK---VSDFGMT---RFVLDDQYTSST---GTKFPVKWASPEVFSF 179

Query: 425 TPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNT--------N 476
               +S    SKSD W+ G + +E+F      Y++  N++     +  ++T         
Sbjct: 180 --SRYS----SKSDVWSFGVLMWEVFSEGKIPYENRSNSE----VVEDISTGFRLYKPRL 229

Query: 477 VPEVMRRLVAKLLENDPSDRPS 498
               + +++       P DRP+
Sbjct: 230 ASTHVYQIMNHCWRERPEDRPA 251

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 68.4 bits (168), Expect = 6e-13
 Identities = 61/332 (18%), Positives = 107/332 (32%), Gaps = 117/332 (35%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFRG-VEYALKMMFNYSAASNSHAILK--AMSKELLPLRK 252
           ++I + K +  G   VV    ++G  + A+KM             +K  +MS++      
Sbjct: 8   EEITLLKELGSGQFGVVKLGKWKGQYDVAVKM-------------IKEGSMSEDEF---- 50

Query: 253 PLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYG-- 310
                E   M  +     HP +V                          +      YG  
Sbjct: 51  ---FQEAQTMMKLS----HPKLV--------------------------KF-----YGVC 72

Query: 311 -RNMSLFI---LMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDL 366
            +   ++I    +   N  L NYLR     L   + + +   + EG+  L  H+  HRDL
Sbjct: 73  SKEYPIYIVTEYIS--NGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLESHQFIHRDL 130

Query: 367 KSDNILLDCSEDNTCPQLVITDFG-------SSYTNKSGLSMQYSSADIELGGNVAL--- 416
            + N L+    D       ++DFG         Y +  G                     
Sbjct: 131 AARNCLV--DRDLCVK---VSDFGMTRYVLDDQYVSSVG----------------TKFPV 169

Query: 417 --MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLN 474
              APEV       +S    SKSD W  G + +E+F      Y    N++     + +++
Sbjct: 170 KWSAPEVFHY--FKYS----SKSDVWAFGILMWEVFSLGKMPYDLYTNSE----VVLKVS 219

Query: 475 T--------NVPEVMRRLVAKLLENDPSDRPS 498
                       + + +++       P  RP+
Sbjct: 220 QGHRLYRPHLASDTIYQIMYSCWHELPEKRPT 251

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score = 70.3 bits (172), Expect = 7e-13
 Identities = 66/339 (19%), Positives = 119/339 (35%), Gaps = 93/339 (27%)

Query: 178 FDKLVQVETLPDVDDVKVDDIQIGKFIAKGTNAVVYEATFRGVE--YALKMMFNYSAASN 235
           F +  Q + +     + ++D  + + I +G    VY          YA+K          
Sbjct: 171 FTRFCQWKNVELNIHLTMNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMK---------- 220

Query: 236 SHAILKAMSKELLPLRKPLR--LNEDMLMNSVENLPPHPNVVVMHFAF---------TDF 284
               L    K+ + +++     LNE ++++ V +    P +V M +AF          D 
Sbjct: 221 ---CLD---KKRIKMKQGETLALNERIMLSLV-STGDCPFIVCMSYAFHTPDKLSFILDL 273

Query: 285 VPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVL 344
           +                     GG                DL  +L  +    S  +   
Sbjct: 274 MN--------------------GG----------------DLHYHLS-QHGVFSEADMRF 296

Query: 345 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYS 404
              +++ G+ H++     +RDLK  NILLD         + I+D G +          ++
Sbjct: 297 YAAEIILGLEHMHNRFVVYRDLKPANILLDEHG-----HVRISDLGLACDFSKKKP--HA 349

Query: 405 SADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYE-IFGHDNPFYQSARN 462
           S      G    MAPEV            Y  S D ++ G + ++ + GH +PF Q    
Sbjct: 350 SV-----GTHGYMAPEVLQKGVA------YDSSADWFSLGCMLFKLLRGH-SPFRQHKTK 397

Query: 463 TDYEV-----NALPQLNTNVPEVMRRLVAKLLENDPSDR 496
             +E+         +L  +    +R L+  LL+ D + R
Sbjct: 398 DKHEIDRMTLTMAVELPDSFSPELRSLLEGLLQRDVNRR 436

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 68.5 bits (168), Expect = 9e-13
 Identities = 64/316 (20%), Positives = 105/316 (33%), Gaps = 86/316 (27%)

Query: 199 QIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRL 256
           Q+G  +  G    VY        +  A+K             + K    +   L    R+
Sbjct: 46  QVGPLLGSGGFGSVYSGIRVSDNLPVAIKH------------VEKDRISDWGELPNGTRV 93

Query: 257 N-EDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLI---YPSALPARLNPTGGYGRN 312
             E +L+  V +      V+ +     D+    PDS ++    P                
Sbjct: 94  PMEVVLLKKVSS--GFSGVIRLL----DWFER-PDSFVLILERPE----------PVQ-- 134

Query: 313 MSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNIL 372
                       DL +++ ER   L        F Q+LE V H +     HRD+K +NIL
Sbjct: 135 ------------DLFDFITER-GALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENIL 181

Query: 373 LDCSEDNTCPQLVITDFGSSYTNKSGL------SMQYSSADIELGGNVALMAPEVALATP 426
           +D +       L + DFGS    K  +      +  YS              PE      
Sbjct: 182 IDLNRGE----LKLIDFGSGALLKDTVYTDFDGTRVYS-------------PPEW----- 219

Query: 427 GLFSFVNY--SKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRL 484
               +  Y    +  W+ G + Y++   D PF         +V    ++++      + L
Sbjct: 220 --IRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSEC----QHL 273

Query: 485 VAKLLENDPSDRPSAE 500
           +   L   PSDRP+ E
Sbjct: 274 IRWCLALRPSDRPTFE 289

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 67.8 bits (166), Expect = 1e-12
 Identities = 54/321 (16%), Positives = 101/321 (31%), Gaps = 88/321 (27%)

Query: 198 IQIGKFIAKGTNAVVYEA--TFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLR 255
           ++    I +G+   VY+   T   VE A   +             K    E    +    
Sbjct: 28  LKFDIEIGRGSFKTVYKGLDTETTVEVAWCEL----------QDRKLTKSERQRFK---- 73

Query: 256 LNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLI--YPSALPARLNPTGGYGRNM 313
             E  ++  ++    HPN+V  + ++   V       L+             T G     
Sbjct: 74  -EEAEMLKGLQ----HPNIVRFYDSWESTVKGKKCIVLVTELM---------TSG----- 114

Query: 314 SLFILMKKYNT----DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTA--HRDLK 367
           +L   +K++       LR++ R                Q+L+G+  L+       HRDLK
Sbjct: 115 TLKTYLKRFKVMKIKVLRSWCR----------------QILKGLQFLHTRTPPIIHRDLK 158

Query: 368 SDNILLDCSEDNTCPQLVITDFGSS--YTNKSGLSMQYSSADIELGGNVALMAPEVALAT 425
            DNI +          + I D G +         ++          G    MAPE+    
Sbjct: 159 CDNIFI----TGPTGSVKIGDLGLATLKRASFAKAVI---------GTPEFMAPEMYEE- 204

Query: 426 PGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPF--YQSARNTDYEVNA---LPQLNTNVPE 479
                   Y    D +  G    E+   + P+   Q+A      V +       +     
Sbjct: 205 -------KYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFDKVAIP 257

Query: 480 VMRRLVAKLLENDPSDRPSAE 500
            ++ ++   +  +  +R S +
Sbjct: 258 EVKEIIEGCIRQNKDERYSIK 278

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 68.4 bits (168), Expect = 1e-12
 Identities = 52/226 (23%), Positives = 83/226 (36%), Gaps = 53/226 (23%)

Query: 314 SLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
            L ++ +    DL+ Y+ ++   +SM        QL+ GV   +  R  HRDLK  N+LL
Sbjct: 107 RLHLIFEYAENDLKKYM-DKNPDVSMRVIKSFLYQLINGVNFCHSRRCLHRDLKPQNLLL 165

Query: 374 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALM---APEVALATPGLFS 430
             S+ +  P L I DF        GL+  +     +    +  +    PE+ L +     
Sbjct: 166 SVSDASETPVLKIGDF--------GLARAFGIPIRQFTHEIITLWYRPPEILLGSR---- 213

Query: 431 FVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDY-----------------EVNALPQ 472
             +YS S D W+   +  E+     P +      D                   V ALP 
Sbjct: 214 --HYSTSVDIWSIACIWAEMLMK-TPLFPGDSEIDQLFKIFEVLGLPDDTTWPGVTALPD 270

Query: 473 LNTNVPEVMRR----------------LVAKLLENDPSDRPSAELA 502
              + P+   +                L+  +LE DP  R SA+ A
Sbjct: 271 WKQSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNA 316

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score = 68.1 bits (167), Expect = 1e-12
 Identities = 62/327 (18%), Positives = 112/327 (34%), Gaps = 71/327 (21%)

Query: 191 DDVKVDDIQIGKFIAKGTNAVVYEAT--FRGVEYALKMMFNYSAASNSHAILKAMSKELL 248
           D V+++   +   I KG+  VV  A        YA+K++        +    +   +   
Sbjct: 8   DCVQLNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTR 67

Query: 249 PLRKPLRLNEDMLMN-----SVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARL 303
           P           +       ++     HPNVV +       V   P+   +Y        
Sbjct: 68  PAPGGCIQPRGPIEQVYQEIAILKKLDHPNVVKLVE-----VLDDPNEDHLY-------- 114

Query: 304 NPTGGYGRNMSLFIL--MKK---YNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNM 358
                        +   + +           L E  A          F  L++G+ +L+ 
Sbjct: 115 ------------MVFELVNQGPVMEVPTLKPLSEDQA-------RFYFQDLIKGIEYLHY 155

Query: 359 HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMA 418
            +  HRD+K  N+L+   + +    + I DFG S   K   ++  ++      G  A MA
Sbjct: 156 QKIIHRDIKPSNLLVG-EDGH----IKIADFGVSNEFKGSDALLSNTV-----GTPAFMA 205

Query: 419 PEVALATPGLFSFVNYSKSDAWTAGTVAYE-IFGHDNPF--------YQSARNTDYEVNA 469
           PE    T  +FS       D W  G   Y  +FG   PF        +   ++   E   
Sbjct: 206 PESLSETRKIFS---GKALDVWAMGVTLYCFVFGQ-CPFMDERIMCLHSKIKSQALEFPD 261

Query: 470 LPQLNTNVPEVMRRLVAKLLENDPSDR 496
            P +  ++    + L+ ++L+ +P  R
Sbjct: 262 QPDIAEDL----KDLITRMLDKNPESR 284

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 67.2 bits (165), Expect = 1e-12
 Identities = 63/332 (18%), Positives = 109/332 (32%), Gaps = 117/332 (35%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFRG-VEYALKMMFNYSAASNSHAILK--AMSKELLPLRK 252
            D+   K +  G   VV    +RG  + A+KM             +K  +MS++      
Sbjct: 24  KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKM-------------IKEGSMSEDEF---- 66

Query: 253 PLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYG-- 310
              + E  +M ++     H  +V                          +L     YG  
Sbjct: 67  ---IEEAKVMMNLS----HEKLV--------------------------QL-----YGVC 88

Query: 311 -RNMSLFI---LMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDL 366
            +   +FI    M   N  L NYLRE   +    + + +   + E + +L   +  HRDL
Sbjct: 89  TKQRPIFIITEYMA--NGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDL 146

Query: 367 KSDNILLDCSEDNTCPQLVITDFGSS-------YTNKSGLSMQYSSADIELGGNVAL--- 416
            + N L+  ++        ++DFG S       YT+  G                +    
Sbjct: 147 AARNCLV--NDQGVVK---VSDFGLSRYVLDDEYTSSVG----------------SKFPV 185

Query: 417 --MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLN 474
               PEV +     FS    SKSD W  G + +EI+      Y+   N++        + 
Sbjct: 186 RWSPPEVLMY--SKFS----SKSDIWAFGVLMWEIYSLGKMPYERFTNSE----TAEHIA 235

Query: 475 T--------NVPEVMRRLVAKLLENDPSDRPS 498
                       E +  ++         +RP+
Sbjct: 236 QGLRLYRPHLASEKVYTIMYSCWHEKADERPT 267

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 60/323 (18%), Positives = 110/323 (34%), Gaps = 99/323 (30%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFRG-VEYALKMMFNYSAASNSHAILKAMSKELLPLRKPL 254
           + +++   + +G    V+  T+ G    A+K +               MS E        
Sbjct: 184 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL-----------KPGTMSPEAF------ 226

Query: 255 RLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMS 314
            L E  +M  +     H  +V ++   ++                     P         
Sbjct: 227 -LQEAQVMKKLR----HEKLVQLYAVVSE--------------------EP--------- 252

Query: 315 LFI---LMKKYNTDLRNYLRERCAQ-LSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDN 370
           ++I    M      L ++L+    + L + + V +  Q+  G+ ++      HRDL++ N
Sbjct: 253 IYIVTEYMS--KGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAAN 310

Query: 371 ILLDCSEDNTCPQLVITDFG-------SSYTNKSGLSMQYSSADIELGGNVALMAPEVAL 423
           IL+   E+  C    + DFG       + YT + G               +   APE A 
Sbjct: 311 ILV--GENLVCK---VADFGLARLIEDNEYTARQGAKFP-----------IKWTAPEAA- 353

Query: 424 ATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNT-------- 475
              G F+     KSD W+ G +  E+       Y    N +     L Q+          
Sbjct: 354 -LYGRFT----IKSDVWSFGILLTELTTKGRVPYPGMVNRE----VLDQVERGYRMPCPP 404

Query: 476 NVPEVMRRLVAKLLENDPSDRPS 498
             PE +  L+ +    +P +RP+
Sbjct: 405 ECPESLHDLMCQCWRKEPEERPT 427

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 67.7 bits (166), Expect = 2e-12
 Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 19/135 (14%)

Query: 318 LMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSE 377
            M+  N  L  +LRE+  + S+ + V +   +  G+ +L      HRDL + NIL+  + 
Sbjct: 127 YME--NGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILV--NS 182

Query: 378 DNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVAL--MAPEVALATPGLFSFVNYS 435
           +  C    ++DFG S   +      Y+++    GG + +   APE        F+    S
Sbjct: 183 NLVCK---VSDFGLSRVLEDDPEATYTTS----GGKIPIRWTAPEAISY--RKFT----S 229

Query: 436 KSDAWTAGTVAYEIF 450
            SD W+ G V +E+ 
Sbjct: 230 ASDVWSFGIVMWEVM 244

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 67.3 bits (165), Expect = 2e-12
 Identities = 42/198 (21%), Positives = 73/198 (36%), Gaps = 42/198 (21%)

Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
            LR+YL++   ++   + +   +Q+ +G+ +L   R  HRDL + NIL+    +N     
Sbjct: 99  SLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILV--ENENRVK-- 154

Query: 385 VITDFGSS---YTNKSGLSMQYSSADIELGGN--VALMAPEVALATPGLFSFVNYSKSDA 439
            I DFG +     +K      +   +    G   +   APE        FS      SD 
Sbjct: 155 -IGDFGLTKVLPQDKEF----FKVKE---PGESPIFWYAPESLTE--SKFS----VASDV 200

Query: 440 WTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRL--------------- 484
           W+ G V YE+F +              +    Q    V  ++  L               
Sbjct: 201 WSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDGCPDE 260

Query: 485 VAKLL----ENDPSDRPS 498
           +  ++     N+ + RPS
Sbjct: 261 IYMIMTECWNNNVNQRPS 278

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 67.4 bits (165), Expect = 2e-12
 Identities = 45/211 (21%), Positives = 77/211 (36%), Gaps = 45/211 (21%)

Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
            LR+YL++   ++   + +   +Q+ +G+ +L   R  HRDL + NIL+    +N     
Sbjct: 130 SLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILV--ENENRVK-- 185

Query: 385 VITDFGSSYTNKSGLS--MQYSSADIELGGNVAL----MAPEVALATPGLFSFVNYSKSD 438
            I DFG        L+  +       ++           APE        FS      SD
Sbjct: 186 -IGDFG--------LTKVLPQDKEYYKVKEPGESPIFWYAPESLTE--SKFS----VASD 230

Query: 439 AWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRL-------------- 484
            W+ G V YE+F +              +    Q    V  ++  L              
Sbjct: 231 VWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDGCPD 290

Query: 485 -VAKLL----ENDPSDRPS-AELAATVCQLY 509
            +  ++     N+ + RPS  +LA  V Q+ 
Sbjct: 291 EIYMIMTECWNNNVNQRPSFRDLALRVDQIR 321

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score = 68.7 bits (168), Expect = 2e-12
 Identities = 66/405 (16%), Positives = 120/405 (29%), Gaps = 109/405 (26%)

Query: 126 RRKTLQQLLYKDNSKPFLAFVGVSLASGTGILTKEDEFEGVCWEIRHAVNN--------- 176
           + + L+    +  ++ F +F+     +       +  F+ +   +   +           
Sbjct: 106 KAQALRAAYLEPQAQLFCSFLDAETVARARAGAGDGLFQPLLRAVLAHLGQAPFQEFLDS 165

Query: 177 -MFDKLVQVETLPDVDDVKVDDIQIGKFIAKGTNAVVYEATFRGVE--YALKMMFNYSAA 233
             F + +Q + L +   +  D     + + +G    V+    +     YA K        
Sbjct: 166 LYFLRFLQWKWL-EAQPMGEDWFLDFRVLGRGGFGEVFACQMKATGKLYACK-------- 216

Query: 234 SNSHAILKAMSKELLPLRKPLRLNEDMLMN--SVENLPPHPNVVVMHFAF---------T 282
                 L    K+ L  RK         M    +        +V + +AF          
Sbjct: 217 -----KLN---KKRLKKRK----GYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLVM 264

Query: 283 DFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLR---ERCAQLSM 339
             +                     GG                D+R ++    E       
Sbjct: 265 TIMN--------------------GG----------------DIRYHIYNVDEDNPGFQE 288

Query: 340 HERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGL 399
              +    Q++ G+ HL+     +RDLK +N+LLD  + N    + I+D G +   K+G 
Sbjct: 289 PRAIFYTAQIVSGLEHLHQRNIIYRDLKPENVLLD-DDGN----VRISDLGLAVELKAGQ 343

Query: 400 SMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYE-IFGHDNPFY 457
           +     A     G    MAPE+ L          Y  S D +  G   YE I     PF 
Sbjct: 344 TKTKGYA-----GTPGFMAPELLLGEE-------YDFSVDYFALGVTLYEMIAAR-GPFR 390

Query: 458 QSARNTDYE------VNALPQLNTNVPEVMRRLVAKLLENDPSDR 496
                 + +      +              +     LL+ DP  R
Sbjct: 391 ARGEKVENKELKQRVLEQAVTYPDKFSPASKDFCEALLQKDPEKR 435

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 68.4 bits (167), Expect = 3e-12
 Identities = 60/323 (18%), Positives = 110/323 (34%), Gaps = 99/323 (30%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFRG-VEYALKMMFNYSAASNSHAILKAMSKELLPLRKPL 254
           + +++   + +G    V+  T+ G    A+K +               MS E        
Sbjct: 267 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL-----------KPGTMSPEAF------ 309

Query: 255 RLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMS 314
            L E  +M  +     H  +V ++   ++                     P         
Sbjct: 310 -LQEAQVMKKLR----HEKLVQLYAVVSE--------------------EP--------- 335

Query: 315 LFI---LMKKYNTDLRNYLRERCAQ-LSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDN 370
           ++I    M      L ++L+    + L + + V +  Q+  G+ ++      HRDL++ N
Sbjct: 336 IYIVTEYMS--KGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAAN 393

Query: 371 ILLDCSEDNTCPQLVITDFG-------SSYTNKSGLSMQYSSADIELGGNVALMAPEVAL 423
           IL+   E+  C    + DFG       + YT + G               +   APE A 
Sbjct: 394 ILV--GENLVCK---VADFGLARLIEDNEYTARQGAKFP-----------IKWTAPEAA- 436

Query: 424 ATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNT-------- 475
              G F+     KSD W+ G +  E+       Y    N +     L Q+          
Sbjct: 437 -LYGRFT----IKSDVWSFGILLTELTTKGRVPYPGMVNRE----VLDQVERGYRMPCPP 487

Query: 476 NVPEVMRRLVAKLLENDPSDRPS 498
             PE +  L+ +    +P +RP+
Sbjct: 488 ECPESLHDLMCQCWRKEPEERPT 510

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 66.6 bits (163), Expect = 4e-12
 Identities = 73/339 (21%), Positives = 112/339 (33%), Gaps = 88/339 (25%)

Query: 185 ETLPDVDDVKV--DDIQIGKFIAKGTNAVVYEATFRG-----VEYALKMMFNYSAASNSH 237
           E    ++DV +      +G+ + KG    V EA  +      V+ A+KM+        + 
Sbjct: 10  ELKEKLEDVLIPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKML-------KAD 62

Query: 238 AILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPS 297
            I  +  +E L         E   M   +    HP+V                  L+   
Sbjct: 63  IIASSDIEEFL--------REAACMKEFD----HPHVA----------------KLV--- 91

Query: 298 ALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRER-----CAQLSMHERVLLFTQLLEG 352
            +  R    G     M +   MK  + DL  +L           L +   V     +  G
Sbjct: 92  GVSLRSRAKGRLPIPMVILPFMK--HGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACG 149

Query: 353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADI-ELG 411
           + +L+     HRDL + N +L  +ED T     + DF        GLS +  S D    G
Sbjct: 150 MEYLSSRNFIHRDLAARNCML--AEDMTVC---VADF--------GLSRKIYSGDYYRQG 196

Query: 412 GNVAL----MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV 467
               L    +A E +LA   L++      SD W  G   +EI       Y    N +   
Sbjct: 197 CASKLPVKWLALE-SLAD-NLYT----VHSDVWAFGVTMWEIMTRGQTPYAGIENAE--- 247

Query: 468 NALPQLNT--------NVPEVMRRLVAKLLENDPSDRPS 498
                L             E +  L+ +    DP  RPS
Sbjct: 248 -IYNYLIGGNRLKQPPECMEEVYDLMYQCWSADPKQRPS 285

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 67.4 bits (165), Expect = 5e-12
 Identities = 59/322 (18%), Positives = 106/322 (32%), Gaps = 101/322 (31%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILK--AMSKELLPLRKP 253
            ++++ + I KG    V    +RG + A+K              +K  A ++  L     
Sbjct: 193 KELKLLQTIGKGEFGDVMLGDYRGNKVAVKC-------------IKNDATAQAFL----- 234

Query: 254 LRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNM 313
               E  +M  +     H N+V +     +    +                         
Sbjct: 235 ---AEASVMTQLR----HSNLVQLLGVIVEEKGGL------------------------- 262

Query: 314 SLFI---LMKKYNTDLRNYLRERCAQ-LSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSD 369
             +I    M      L +YLR R    L     +     + E + +L  +   HRDL + 
Sbjct: 263 --YIVTEYMA--KGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAAR 318

Query: 370 NILLDCSEDNTCPQLVITDFGSS---YTNKSGLSMQYSSADIELGGNVAL--MAPEVALA 424
           N+L+  SEDN      ++DFG +    + +               G + +   APE    
Sbjct: 319 NVLV--SEDNVAK---VSDFGLTKEASSTQD-------------TGKLPVKWTAPEALRE 360

Query: 425 TPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNT--------N 476
               FS    +KSD W+ G + +EI+      Y      D     +P++           
Sbjct: 361 --KKFS----TKSDVWSFGILLWEIYSFGRVPYPRIPLKD----VVPRVEKGYKMDAPDG 410

Query: 477 VPEVMRRLVAKLLENDPSDRPS 498
            P  +  ++      D + RP+
Sbjct: 411 CPPAVYDVMKNCWHLDAATRPT 432

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* Length = 437

 Score = 67.1 bits (164), Expect = 5e-12
 Identities = 53/243 (21%), Positives = 86/243 (35%), Gaps = 65/243 (26%)

Query: 271 HPNVVVMHFAF---------TDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKK 321
              +  +H+AF          D+                      GG      L  L+ K
Sbjct: 133 SKWITTLHYAFQDDNNLYLVMDYYV--------------------GG-----DLLTLLSK 167

Query: 322 YNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTC 381
           +     + L E  A+  + E V+        +  ++     HRD+K DNIL+D +     
Sbjct: 168 F----EDRLPEEMARFYLAEMVI-------AIDSVHQLHYVHRDIKPDNILMDMNG---- 212

Query: 382 PQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAW 440
             + + DFGS        ++Q S A     G    ++PE+  A  G      Y    D W
Sbjct: 213 -HIRLADFGSCLKLMEDGTVQSSVA----VGTPDYISPEILQAMEGGKG--RYGPECDWW 265

Query: 441 TAGTVAYEIFGHDNPFYQSARNTDYE--VNA-----LPQLNTNVPEVMRRLVAKLLENDP 493
           + G   YE+   + PFY  +    Y   +N       P   T+V E  + L+ +L+    
Sbjct: 266 SLGVCMYEMLYGETPFYAESLVETYGKIMNHKERFQFPTQVTDVSENAKDLIRRLI-CSR 324

Query: 494 SDR 496
             R
Sbjct: 325 EHR 327

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 66.6 bits (163), Expect = 6e-12
 Identities = 72/342 (21%), Positives = 116/342 (33%), Gaps = 103/342 (30%)

Query: 199 QIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLN 257
              K I  G+  VV++A      E A+K                   K L   R   R  
Sbjct: 43  TNCKVIGNGSFGVVFQAKLVESDEVAIK-------------------KVLQDKRFKNR-- 81

Query: 258 EDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFI 317
           E  +M  V+    HPNVV +   F                         G     + L +
Sbjct: 82  ELQIMRIVK----HPNVVDLKAFFY----------------------SNGDKKDEVFLNL 115

Query: 318 LMKKYNTDLRNYLR--ERCAQLSMHERVLLFT-QLLEGVTHLNMHRTAHRDLKSDNILLD 374
           +++     +    R   +  Q      + L+  QLL  + +++     HRD+K  N+LL 
Sbjct: 116 VLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSIGICHRDIKPQNLLL- 174

Query: 375 CSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALM--APEVALATPGLFSFV 432
              D     L + DFGS+   K  ++ + + + I      +    APE+      +F   
Sbjct: 175 ---DPPSGVLKLIDFGSA---KILIAGEPNVSYI-----CSRYYRAPEL------IFGAT 217

Query: 433 NYSKS-DAWTAGTVAYE------IFGHDNPFYQ----------------SARNTDYEVNA 469
           NY+ + D W+ G V  E      +F  ++   Q                   N +Y  + 
Sbjct: 218 NYTTNIDIWSTGCVMAELMQGQPLFPGESGIDQLVEIIKVLGTPSREQIKTMNPNYMEHK 277

Query: 470 LPQ---------LNTNVPEVMRRLVAKLLENDPSDRPSAELA 502
            PQ              P     L+++LLE  PS R +A  A
Sbjct: 278 FPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLTAIEA 319

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 66.2 bits (162), Expect = 6e-12
 Identities = 45/188 (23%), Positives = 82/188 (43%), Gaps = 25/188 (13%)

Query: 318 LMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSE 377
            M+  N  L ++LR+  AQ ++ + V +   +  G+ +L+     HRDL + NIL+  + 
Sbjct: 127 YME--NGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILI--NS 182

Query: 378 DNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVAL--MAPEVALATPGLFSFVNYS 435
           +  C    ++DFG     +      Y++     GG + +   +PE        F+    S
Sbjct: 183 NLVCK---VSDFGLGRVLEDDPEAAYTTR----GGKIPIRWTSPEAIAY--RKFT----S 229

Query: 436 KSDAWTAGTVAYEIFGHDNPFYQSARNTD--YEVNA---LPQLNTNVPEVMRRLVAKLLE 490
            SD W+ G V +E+  +    Y    N D    V+    LP    + P  + +L+    +
Sbjct: 230 ASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRLPPPM-DCPAALYQLMLDCWQ 288

Query: 491 NDPSDRPS 498
            D ++RP 
Sbjct: 289 KDRNNRPK 296

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 65.3 bits (160), Expect = 8e-12
 Identities = 69/324 (21%), Positives = 106/324 (32%), Gaps = 99/324 (30%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFRGVEY--ALKMMFNYSAASNSHAILK--AMSKELLPLR 251
            DI +   +  G    VYE  ++      A+K              LK   M  E     
Sbjct: 13  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKT-------------LKEDTMEVEEF--- 56

Query: 252 KPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYG- 310
               L E  +M  ++    HPN+V                          +L      G 
Sbjct: 57  ----LKEAAVMKEIK----HPNLV--------------------------QL-----LGV 77

Query: 311 --RNMSLFI---LMKKYNTDLRNYLRE-RCAQLSMHERVLLFTQLLEGVTHLNMHRTAHR 364
             R    +I    M     +L +YLRE    ++S    + + TQ+   + +L      HR
Sbjct: 78  CTREPPFYIITEFMT--YGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHR 135

Query: 365 DLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGN--VALMAPEVA 422
           DL + N L+   E++      + DFG S   +      Y++     G    +   APE  
Sbjct: 136 DLAARNCLV--GENHLVK---VADFGLS---RLMTGDTYTAHA---GAKFPIKWTAPESL 184

Query: 423 LATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNT------- 475
                 FS     KSD W  G + +EI  +    Y     +         L         
Sbjct: 185 AY--NKFS----IKSDVWAFGVLLWEIATYGMSPYPGIDLSQ----VYELLEKDYRMERP 234

Query: 476 -NVPEVMRRLVAKLLENDPSDRPS 498
              PE +  L+    + +PSDRPS
Sbjct: 235 EGCPEKVYELMRACWQWNPSDRPS 258

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 64.9 bits (159), Expect = 1e-11
 Identities = 51/194 (26%), Positives = 76/194 (39%), Gaps = 39/194 (20%)

Query: 318 LMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSE 377
           L      +LR++L+ R   L +   +L   QL   + +L   R  HRD+ + N+L+  S 
Sbjct: 96  LCT--LGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLV--SS 151

Query: 378 DNTCPQLVITDFG-------SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFS 430
           ++      + DFG       S+Y   S   +            +  MAPE        F+
Sbjct: 152 NDCVK---LGDFGLSRYMEDSTYYKASKGKLP-----------IKWMAPESINF--RRFT 195

Query: 431 FVNYSKSDAWTAGTVAYEIFGH-DNPFYQSARNTD--YEVNA---LPQLNTNVPEVMRRL 484
               S SD W  G   +EI  H   P +Q  +N D    +     LP    N P  +  L
Sbjct: 196 ----SASDVWMFGVCMWEILMHGVKP-FQGVKNNDVIGRIENGERLPMPP-NCPPTLYSL 249

Query: 485 VAKLLENDPSDRPS 498
           + K    DPS RP 
Sbjct: 250 MTKCWAYDPSRRPR 263

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} Length = 383

 Score = 65.9 bits (161), Expect = 1e-11
 Identities = 58/356 (16%), Positives = 104/356 (29%), Gaps = 98/356 (27%)

Query: 199 QIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRL 256
            +GK +  G+  +V E      G  +ALK +             K  ++EL  ++     
Sbjct: 10  SLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQ-------DPRYK--NRELDIMK----- 55

Query: 257 NEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLF 316
               +++       H N++ +   F       P                 G    + S+ 
Sbjct: 56  ----VLD-------HVNIIKLVDYFYTTGDEEPKPPQPPDDHNKLGGKNNGVNNHHKSVI 104

Query: 317 ILMKKYN----------TDLRNYLRERCAQ---LSM-HERVLLFTQLLEGVTHLNMHRTA 362
           +   +              L   L+        + M    + ++ QL   V  ++     
Sbjct: 105 VNPSQNKYLNVIMEYVPDTLHKVLKSFIRSGRSIPMNLISIYIY-QLFRAVGFIHSLGIC 163

Query: 363 HRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSM-QYSSADIELGGNVA---LMA 418
           HRD+K  N+L++         L + DFGS+           Y          +      A
Sbjct: 164 HRDIKPQNLLVNS---KDN-TLKLCDFGSAKKLIPSEPSVAY----------ICSRFYRA 209

Query: 419 PEVALATPGLFSFVNYSKS-DAWTAGTVAYE------IFGHDNPFYQ------------- 458
           PE+      +     Y+ S D W+ G V  E      +F  +    Q             
Sbjct: 210 PEL------MLGATEYTPSIDLWSIGCVFGELILGKPLFSGETSIDQLVRIIQIMGTPTK 263

Query: 459 ---SARNTDYEVNALPQLN---------TNVPEVMRRLVAKLLENDPSDRPSAELA 502
                 N  Y     P L             P +   L+ ++L  +P  R +   A
Sbjct: 264 EQMIRMNPHYTEVRFPTLKAKDWRKILPEGTPSLAIDLLEQILRYEPDLRINPYEA 319

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 64.6 bits (158), Expect = 1e-11
 Identities = 63/337 (18%), Positives = 111/337 (32%), Gaps = 91/337 (27%)

Query: 185 ETLPDVDDVKVDD----IQIGKFIAKGTNAVVYEATFRG-----VEYALKMMFNYSAASN 235
             L +V DV +          + I KG   VVY   +       ++ A+K +        
Sbjct: 6   ALLAEVKDVLIPHERVVTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSL-------- 57

Query: 236 SHAILKAMSKELLPLRKPLR-LNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLI 294
                      +  +++    L E +LM  +     HPNV+ +                 
Sbjct: 58  ---------SRITEMQQVEAFLREGLLMRGLN----HPNVLALIGIMLPPEGLP------ 98

Query: 295 YPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVT 354
                               L   M   + DL  ++R      ++ + +    Q+  G+ 
Sbjct: 99  ------------------HVLLPYMC--HGDLLQFIRSPQRNPTVKDLISFGLQVARGME 138

Query: 355 HLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSS---YTNKSGLSMQYSSADIELG 411
           +L   +  HRDL + N +L   E  T     + DFG +            +Y S      
Sbjct: 139 YLAEQKFVHRDLAARNCML--DESFTVK---VADFGLARDILDR------EYYSVQQHRH 187

Query: 412 GN--VALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNA 469
               V   A E +L T   F+    +KSD W+ G + +E+     P Y+     D     
Sbjct: 188 ARLPVKWTALE-SLQT-YRFT----TKSDVWSFGVLLWELLTRGAPPYRHIDPFD----L 237

Query: 470 LPQLNT--------NVPEVMRRLVAKLLENDPSDRPS 498
              L            P+ + +++ +  E DP+ RP+
Sbjct: 238 THFLAQGRRLPQPEYCPDSLYQVMQQCWEADPAVRPT 274

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score = 64.9 bits (159), Expect = 1e-11
 Identities = 51/225 (22%), Positives = 84/225 (37%), Gaps = 55/225 (24%)

Query: 314 SLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
           SL ++ +  + DL+ YL +    ++MH   L   QLL G+ + +  +  HRDLK  N+L+
Sbjct: 74  SLTLVFEYLDKDLKQYLDDCGNIINMHNVKLFLFQLLRGLAYCHRQKVLHRDLKPQNLLI 133

Query: 374 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALM---APEVALATPGLFS 430
           +        +L + DF        GL+   S         V  +    P++ L +     
Sbjct: 134 NERG-----ELKLADF--------GLARAKSIPTKTYDNEVVTLWYRPPDILLGST---- 176

Query: 431 FVNYSKS-DAWTAGTVAYE-------------------IF------------GHDN-PFY 457
             +YS   D W  G + YE                   IF            G  +   +
Sbjct: 177 --DYSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEF 234

Query: 458 QSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA 502
           ++     Y   AL      +      L+ KLL+ +  +R SAE A
Sbjct: 235 KTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDA 279

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 64.2 bits (157), Expect = 2e-11
 Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 19/135 (14%)

Query: 318 LMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSE 377
            M+  N  L  +LR    Q ++ + V +   +  G+ +L+     HRDL + N+L+    
Sbjct: 131 YME--NGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLSDLGYVHRDLAARNVLV--DS 186

Query: 378 DNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVAL--MAPEVALATPGLFSFVNYS 435
           +  C    ++DFG S   +      Y++     GG + +   APE        FS    S
Sbjct: 187 NLVCK---VSDFGLSRVLEDDPDAAYTTT----GGKIPIRWTAPEAIAF--RTFS----S 233

Query: 436 KSDAWTAGTVAYEIF 450
            SD W+ G V +E+ 
Sbjct: 234 ASDVWSFGVVMWEVL 248

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* Length = 410

 Score = 65.1 bits (159), Expect = 2e-11
 Identities = 70/325 (21%), Positives = 113/325 (34%), Gaps = 93/325 (28%)

Query: 193 VKVDDIQIGKFIAKGTNAVVYEATFRGVE--YALKMMFNYSAASNSHAILKAMSKELLPL 250
           +K +D ++ K I +G    V     +     YA+K++                SK  +  
Sbjct: 66  MKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLL----------------SKFEMIK 109

Query: 251 RKPLR--LNEDMLMNSVENLPPHPNVVVMHFAF---------TDFVPSIPDSSLIYPSAL 299
           R        E  +M         P VV + +AF          +++P             
Sbjct: 110 RSDSAFFWEERDIMAFAN----SPWVVQLFYAFQDDRYLYMVMEYMP------------- 152

Query: 300 PARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMH 359
                  GG      L  LM  Y+      + E+ A+    E VL        +  ++  
Sbjct: 153 -------GG-----DLVNLMSNYD------VPEKWARFYTAEVVL-------ALDAIHSM 187

Query: 360 RTAHRDLKSDNILLDCSEDNTCPQLVITDFGSS-YTNKSGLSMQYSSADIELGGNVALMA 418
              HRD+K DN+LLD S       L + DFG+    NK G+    +       G    ++
Sbjct: 188 GFIHRDVKPDNMLLDKSG-----HLKLADFGTCMKMNKEGMVRCDT-----AVGTPDYIS 237

Query: 419 PEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQL-- 473
           PEV  +  G      Y +  D W+ G   YE+   D PFY  +    Y   +N    L  
Sbjct: 238 PEVLKSQGG---DGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMNHKNSLTF 294

Query: 474 --NTNVPEVMRRLVAKLLENDPSDR 496
             + ++ +  + L+   L  D   R
Sbjct: 295 PDDNDISKEAKNLICAFL-TDREVR 318

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 64.1 bits (157), Expect = 2e-11
 Identities = 49/225 (21%), Positives = 77/225 (34%), Gaps = 55/225 (24%)

Query: 314 SLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
            L ++ +    DL+  L E    L   +  +   QLL GV H + HR  HRDLK  N+L+
Sbjct: 93  CLTLVFEFMEKDLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCHQHRILHRDLKPQNLLI 152

Query: 374 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALM---APEVALATPGLFS 430
           +         L + DF        GL+  +          V  +   AP+V + +     
Sbjct: 153 NSDG-----ALKLADF--------GLARAFGIPVRSYTHEVVTLWYRAPDVLMGSK---- 195

Query: 431 FVNYSKS-DAWTAGTVAYE-------------------IF------------GHDN-PFY 457
              YS S D W+ G +  E                   IF                 P +
Sbjct: 196 --KYSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQLPKIFSILGTPNPREWPQVQELPLW 253

Query: 458 QSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA 502
           +      +E      +     +    L++ +L  DP+ R SA  A
Sbjct: 254 KQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDA 298

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score = 65.6 bits (160), Expect = 2e-11
 Identities = 44/159 (27%), Positives = 65/159 (40%), Gaps = 31/159 (19%)

Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
           ++  G+  L+  R  +RDLK +NILLD    +    + I+D         GL++      
Sbjct: 294 EICCGLEDLHRERIVYRDLKPENILLD-DHGH----IRISDL--------GLAVHVPEGQ 340

Query: 408 IELG--GNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYE-IFGHDNPFYQSARNT 463
              G  G V  MAPEV            Y+ S D W  G + YE I G  +PF Q  +  
Sbjct: 341 TIKGRVGTVGYMAPEVVKNER-------YTFSPDWWALGCLLYEMIAGQ-SPFQQRKKKI 392

Query: 464 DYE------VNALPQLNTNVPEVMRRLVAKLLENDPSDR 496
             E           + +       R L ++LL  DP++R
Sbjct: 393 KREEVERLVKEVPEEYSERFSPQARSLCSQLLCKDPAER 431

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 63.8 bits (156), Expect = 2e-11
 Identities = 59/289 (20%), Positives = 98/289 (33%), Gaps = 95/289 (32%)

Query: 185 ETLPDVDDVKVD----DIQIGKFIAKGTNAVVYEATFRG-----VEYALKMMFNYSAASN 235
           E +  V  V +      +   + I +G    VY  T        +  A+K          
Sbjct: 10  ELVQAVQHVVIGPSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKS--------- 60

Query: 236 SHAILK--AMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSL 293
               L       E+        L E ++M        HPNV+                  
Sbjct: 61  ----LNRITDIGEVSQF-----LTEGIIMKDFS----HPNVL------------------ 89

Query: 294 IYPSALPARLNPTGGYG----RNMSLFI---LMKKYNTDLRNYLRERCAQLSMHERVLLF 346
                    L      G       S  +    MK  + DLRN++R      ++ + +   
Sbjct: 90  --------SL-----LGICLRSEGSPLVVLPYMK--HGDLRNFIRNETHNPTVKDLIGFG 134

Query: 347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSS---YTNKSGLSMQY 403
            Q+ +G+ +L   +  HRDL + N +L   E  T     + DFG +   Y        +Y
Sbjct: 135 LQVAKGMKYLASKKFVHRDLAARNCML--DEKFTVK---VADFGLARDMYDK------EY 183

Query: 404 SSADIELGGNVAL--MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIF 450
            S   + G  + +  MA E +L T   F+    +KSD W+ G + +E+ 
Sbjct: 184 YSVHNKTGAKLPVKWMALE-SLQT-QKFT----TKSDVWSFGVLLWELM 226

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 65.6 bits (160), Expect = 2e-11
 Identities = 48/194 (24%), Positives = 76/194 (39%), Gaps = 39/194 (20%)

Query: 318 LMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSE 377
           L      +LR++L+ R   L +   +L   QL   + +L   R  HRD+ + N+L+  S 
Sbjct: 471 LCT--LGELRSFLQVRKFSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLV--SS 526

Query: 378 DNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGN----VALMAPEVALATPGLFSFVN 433
           ++      + DF        GLS     +           +  MAPE ++     F+   
Sbjct: 527 NDCVK---LGDF--------GLSRYMEDSTYYKASKGKLPIKWMAPE-SINF-RRFT--- 570

Query: 434 YSKSDAWTAGTVAYEIFGH-DNPFYQSARNTDYEVNALPQLNT--------NVPEVMRRL 484
            S SD W  G   +EI  H   P +Q  +N D     + ++          N P  +  L
Sbjct: 571 -SASDVWMFGVCMWEILMHGVKP-FQGVKNND----VIGRIENGERLPMPPNCPPTLYSL 624

Query: 485 VAKLLENDPSDRPS 498
           + K    DPS RP 
Sbjct: 625 MTKCWAYDPSRRPR 638

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 64.2 bits (157), Expect = 3e-11
 Identities = 31/141 (21%), Positives = 52/141 (36%), Gaps = 32/141 (22%)

Query: 318 LMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSE 377
           LM      L +Y+RE    +     +    Q+ +G+ +L   R  HRDL + N+L+    
Sbjct: 97  LMP--FGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLV--KT 152

Query: 378 DNTCPQLVITDFG--------SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF 429
                   ITDFG            +  G  +            +  MA E  L    ++
Sbjct: 153 PQHVK---ITDFGLAKLLGAEEKEYHAEGGKVP-----------IKWMALESILH--RIY 196

Query: 430 SFVNYSKSDAWTAGTVAYEIF 450
           +     +SD W+ G   +E+ 
Sbjct: 197 T----HQSDVWSYGVTVWELM 213

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 63.4 bits (155), Expect = 3e-11
 Identities = 66/327 (20%), Positives = 117/327 (35%), Gaps = 107/327 (32%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFRG-VEYALKMMFNYSAASNSHAILK--AMSKELLPLRK 252
           + +++ + +  G    V+   + G  + A+K              LK  +MS +      
Sbjct: 13  ETLKLVERLGAGQFGEVWMGYYNGHTKVAVKS-------------LKQGSMSPDAF---- 55

Query: 253 PLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRN 312
              L E  LM  ++    H  +V ++   T                      P       
Sbjct: 56  ---LAEANLMKQLQ----HQRLVRLYAVVTQ--------------------EP------- 81

Query: 313 MSLFI---LMKKYNTDLRNYLRER-CAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKS 368
             ++I    M+  N  L ++L+     +L++++ + +  Q+ EG+  +      HRDL++
Sbjct: 82  --IYIITEYME--NGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRA 137

Query: 369 DNILLDCSEDNTCPQLVITDFG-------SSYTNKSGLSMQYSSADIELGGNVAL--MAP 419
            NIL+  S+  +C    I DFG       + YT + G                 +   AP
Sbjct: 138 ANILV--SDTLSCK---IADFGLARLIEDNEYTAREG-------------AKFPIKWTAP 179

Query: 420 EVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNT---- 475
           E      G F+     KSD W+ G +  EI  H    Y    N +     +  L      
Sbjct: 180 EAINY--GTFT----IKSDVWSFGILLTEIVTHGRIPYPGMTNPE----VIQNLERGYRM 229

Query: 476 ----NVPEVMRRLVAKLLENDPSDRPS 498
               N PE + +L+    +  P DRP+
Sbjct: 230 VRPDNCPEELYQLMRLCWKERPEDRPT 256

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 63.8 bits (156), Expect = 3e-11
 Identities = 56/283 (19%), Positives = 96/283 (33%), Gaps = 77/283 (27%)

Query: 185 ETLPDVDDVKV--DDIQIGKFIAKGTNAVVYEATFRGVEY-----ALKMMFNYSAASNSH 237
           E    ++DV +  + + +GK + +G    V E   +  +      A+K M     +S   
Sbjct: 21  ELQNKLEDVVIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTM-KLDNSS--- 76

Query: 238 AILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPS 297
                  +E+        L+E   M        HPNV+ +     +         ++   
Sbjct: 77  ------QREIEEF-----LSEAACMKDFS----HPNVIRLLGVCIEMSSQGIPKPMV--- 118

Query: 298 ALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRER-----CAQLSMHERVLLFTQLLEG 352
                            +   MK    DL  YL           + +   +     +  G
Sbjct: 119 -----------------ILPFMK--YGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALG 159

Query: 353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADI-ELG 411
           + +L+     HRDL + N +L   +D T     + DF        GLS +  S D    G
Sbjct: 160 MEYLSNRNFLHRDLAARNCML--RDDMTVC---VADF--------GLSKKIYSGDYYRQG 206

Query: 412 GNVAL----MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIF 450
               +    +A E +LA   +++    SKSD W  G   +EI 
Sbjct: 207 RIAKMPVKWIAIE-SLAD-RVYT----SKSDVWAFGVTMWEIA 243

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 63.4 bits (155), Expect = 3e-11
 Identities = 31/135 (22%), Positives = 51/135 (37%), Gaps = 19/135 (14%)

Query: 318 LMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSE 377
           +       L  +L  +  ++ +     L  Q+  G+ +L      HRDL + N+LL    
Sbjct: 90  MAG--GGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNFVHRDLAARNVLL--VN 145

Query: 378 DNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGN--VALMAPEVALATPGLFSFVNYS 435
            +      I+DFG S    +     Y++      G   +   APE        FS    S
Sbjct: 146 RHYAK---ISDFGLSKALGAD-DSYYTARS---AGKWPLKWYAPECINF--RKFS----S 192

Query: 436 KSDAWTAGTVAYEIF 450
           +SD W+ G   +E  
Sbjct: 193 RSDVWSYGVTMWEAL 207

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 64.3 bits (157), Expect = 4e-11
 Identities = 71/346 (20%), Positives = 108/346 (31%), Gaps = 110/346 (31%)

Query: 199 QIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRL 256
              K I  G+  VVY+A     G   A+K                   K L   R   R 
Sbjct: 57  TDTKVIGNGSFGVVYQAKLCDSGELVAIK-------------------KVLQDKRFKNR- 96

Query: 257 NEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLF 316
            E  +M  ++    H N+V + + F                        +G     + L 
Sbjct: 97  -ELQIMRKLD----HCNIVRLRYFFY----------------------SSGEKKDEVYLN 129

Query: 317 ILMKKYNTDLRNYLRERCAQ---LSMHERVLLFT-QLLEGVTHLNMHRTAHRDLKSDNIL 372
           +++      +    R        L +   V L+  QL   + +++     HRD+K  N+L
Sbjct: 130 LVLDYVPETVYRVARHYSRAKQTLPVIY-VKLYMYQLFRSLAYIHSFGICHRDIKPQNLL 188

Query: 373 LDCSEDNTCPQLVITDFGSSYTNKSGLSM-QYSSADIELGGNVA---LMAPEVALATPGL 428
           L    D     L + DFGS+     G     Y          +      APE+      +
Sbjct: 189 L----DPDTAVLKLCDFGSAKQLVRGEPNVSY----------ICSRYYRAPEL------I 228

Query: 429 FSFVNYSKS-DAWTAGTVAYE------IFGHDNPFYQ----------------SARNTDY 465
           F   +Y+ S D W+AG V  E      IF  D+   Q                   N +Y
Sbjct: 229 FGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNY 288

Query: 466 EVNALPQ---------LNTNVPEVMRRLVAKLLENDPSDRPSAELA 502
                PQ              P     L ++LLE  P+ R +   A
Sbjct: 289 TEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEA 334

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 63.8 bits (156), Expect = 4e-11
 Identities = 47/226 (20%), Positives = 70/226 (30%), Gaps = 76/226 (33%)

Query: 324 TDLRNYLRERCAQLSMHE-RVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 382
             + + L      L     +  LF Q++ G+   + H   HRD+K +NIL+  S      
Sbjct: 108 HTILDDLELFPNGLDYQVVQKYLF-QIINGIGFCHSHNIIHRDIKPENILVSQSG----- 161

Query: 383 QLVITDFG---------SSYTNKSGLSMQYSSADIELGGNVALM---APEVALATPGLFS 430
            + + DFG           Y ++                 VA     APE+      L  
Sbjct: 162 VVKLCDFGFARTLAAPGEVYDDE-----------------VATRWYRAPEL------LVG 198

Query: 431 FVNYSKS-DAWTAGTVAYE-------------------IF-------------GHDNPFY 457
            V Y K+ D W  G +  E                   I               + NP +
Sbjct: 199 DVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDIDQLYHIMMCLGNLIPRHQELFNKNPVF 258

Query: 458 QSARNTDY-EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA 502
              R  +  E   L +    + EV+  L  K L  DP  RP     
Sbjct: 259 AGVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAEL 304

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 64.0 bits (156), Expect = 4e-11
 Identities = 64/315 (20%), Positives = 107/315 (33%), Gaps = 111/315 (35%)

Query: 169 EIRHAVNNMFDKLVQVETLPDVDDVKVDDIQIGKFIAKGTNAVVYEATFRGVEY------ 222
            I    N  +    +  ++ D+ +V   +I + + +  G    VYE    G+        
Sbjct: 44  TIMTDYNPNYCFAGKTSSISDLKEVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQ 103

Query: 223 -ALKMMFNYSAASNSHAILK--AMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHF 279
            A+K              L      ++ L       L E ++++       H N+V    
Sbjct: 104 VAVKT-------------LPEVCSEQDELDF-----LMEALIISKFN----HQNIV---- 137

Query: 280 AFTDFVPSIPDSSLIYPSALPARLNPTGGYG---RNMSLFI---LMKKYNTDLRNYLRER 333
                                 R       G   +++  FI   LM     DL+++LRE 
Sbjct: 138 ----------------------RC-----IGVSLQSLPRFILLELMA--GGDLKSFLRET 168

Query: 334 C------AQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCS-EDNTCPQLVI 386
                  + L+M + + +   +  G  +L  +   HRD+ + N LL C           I
Sbjct: 169 RPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAK---I 225

Query: 387 TDFG-------SSYTNKSGLSMQYSSADIELGGNVAL----MAPEVALATPGLFSFVNYS 435
            DFG       + Y  K G +M              L    M PE A    G+F+    S
Sbjct: 226 GDFGMARDIYRAGYYRKGGCAM--------------LPVKWMPPE-AFME-GIFT----S 265

Query: 436 KSDAWTAGTVAYEIF 450
           K+D W+ G + +EIF
Sbjct: 266 KTDTWSFGVLLWEIF 280

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 63.5 bits (155), Expect = 5e-11
 Identities = 65/312 (20%), Positives = 108/312 (34%), Gaps = 111/312 (35%)

Query: 172 HAVNNMFDKLVQVETLPDVDDVKVDDIQIGKFIAKGTNAVVYEATFRGVEY-------AL 224
           H  N  +    +  ++ D+ +V   +I + + +  G    VYE    G+         A+
Sbjct: 6   HHHNPNYCFAGKTSSISDLKEVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAV 65

Query: 225 KMMFNYSAASNSHAILK--AMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFT 282
           K              L      ++ L       L E ++++       H N+V       
Sbjct: 66  KT-------------LPEVCSEQDELDF-----LMEALIISKFN----HQNIV------- 96

Query: 283 DFVPSIPDSSLIYPSALPARLNPTGGYG---RNMSLFI---LMKKYNTDLRNYLRERC-- 334
                              R       G   +++  FI   LM     DL+++LRE    
Sbjct: 97  -------------------RC-----IGVSLQSLPRFILMELMA--GGDLKSFLRETRPR 130

Query: 335 ----AQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCS-EDNTCPQLVITDF 389
               + L+M + + +   +  G  +L  +   HRD+ + N LL C           I DF
Sbjct: 131 PSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAK---IGDF 187

Query: 390 G-------SSYTNKSGLSMQYSSADIELGGNVAL----MAPEVALATPGLFSFVNYSKSD 438
           G       +SY  K G +M              L    M PE A    G+F+    SK+D
Sbjct: 188 GMARDIYRASYYRKGGCAM--------------LPVKWMPPE-AFME-GIFT----SKTD 227

Query: 439 AWTAGTVAYEIF 450
            W+ G + +EIF
Sbjct: 228 TWSFGVLLWEIF 239

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360

 Score = 63.5 bits (155), Expect = 5e-11
 Identities = 65/370 (17%), Positives = 113/370 (30%), Gaps = 111/370 (30%)

Query: 180 KLVQVETLPDVDDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSH 237
            L       +    ++D  Q+ +   +GT   V     +  G+  A+K +          
Sbjct: 7   SLNAAAAADERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVI-------QD 59

Query: 238 AILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPS 297
              +  ++EL  ++    L+             HPN+V +   F  +     D   IY  
Sbjct: 60  PRFR--NRELQIMQDLAVLH-------------HPNIVQLQSYF--YTLGERDRRDIY-- 100

Query: 298 ALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQ---LSM-HERVLLFTQLLEGV 353
                            L ++M+     L    R    +         +V LF QL+  +
Sbjct: 101 -----------------LNVVMEYVPDTLHRCCRNYYRRQVAPPPILIKVFLF-QLIRSI 142

Query: 354 T--HLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSM-QYSSADIEL 410
              HL      HRD+K  N+L++ +       L + DFGS+           Y       
Sbjct: 143 GCLHLPSVNVCHRDIKPHNVLVNEA---DG-TLKLCDFGSAKKLSPSEPNVAY------- 191

Query: 411 GGNVA---LMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYE------IFGHDNPFYQ-- 458
              +      APE+      +F   +Y+ + D W+ G +  E      IF  DN   Q  
Sbjct: 192 ---ICSRYYRAPEL------IFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSAGQLH 242

Query: 459 --------------SARNTDYEVNALPQL------------NTNVPEVMRRLVAKLLEND 492
                            N  +    L               +    +    L++ LL+  
Sbjct: 243 EIVRVLGCPSREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYL 302

Query: 493 PSDRPSAELA 502
           P +R     A
Sbjct: 303 PEERMKPYEA 312

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 63.1 bits (154), Expect = 6e-11
 Identities = 46/203 (22%), Positives = 72/203 (35%), Gaps = 53/203 (26%)

Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
            LR++L+   A+L     +L  +Q+ +G+ +L   R  HRDL + NIL+    +      
Sbjct: 112 CLRDFLQRHRARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILV--ESEAHVK-- 167

Query: 385 VITDFGSS---------YTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS 435
            I DFG +         Y  +                 +   APE       +FS     
Sbjct: 168 -IADFGLAKLLPLDKDYYVVREP-------GQSP----IFWYAPESLSD--NIFS----R 209

Query: 436 KSDAWTAGTVAYEIFGH-DNPFYQSARNTDYEVNALPQLNTNVPEVMRRL---------- 484
           +SD W+ G V YE+F + D     SA                +  ++  L          
Sbjct: 210 QSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGCERDVP--ALSRLLELLEEGQRLPAPP 267

Query: 485 -----VAKLL----ENDPSDRPS 498
                V +L+       P DRPS
Sbjct: 268 ACPAEVHELMKLCWAPSPQDRPS 290

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 62.2 bits (152), Expect = 7e-11
 Identities = 29/142 (20%), Positives = 46/142 (32%), Gaps = 35/142 (24%)

Query: 318 LMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSE 377
           L      +L +YL      L +   VL   Q+ + + +L      HRD+   NIL+  + 
Sbjct: 93  LYP--YGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLESINCVHRDIAVRNILV--AS 148

Query: 378 DNTCPQLVITDFG-------SSYTNKSGLSMQYSSADIELGGNVAL--MAPEVALATPGL 428
                   + DFG         Y   S                + +  M+PE        
Sbjct: 149 PECVK---LGDFGLSRYIEDEDYYKASV-------------TRLPIKWMSPESINF--RR 190

Query: 429 FSFVNYSKSDAWTAGTVAYEIF 450
           F+    + SD W      +EI 
Sbjct: 191 FT----TASDVWMFAVCMWEIL 208

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... Length = 350

 Score = 63.1 bits (154), Expect = 7e-11
 Identities = 66/320 (20%), Positives = 125/320 (39%), Gaps = 83/320 (25%)

Query: 188 PDVDDVKVDDIQIGKFIAKGTNAVVYEATFRGVE--YALKMMFNYSAASNSHAILKAMSK 245
           P  +  ++D     K +  G+   V     +     YA+K++                 K
Sbjct: 33  PSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKIL----------------DK 76

Query: 246 ELLPLRKPLR--LNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARL 303
           + +   K +   LNE  ++ +V      P +V + F+F D                    
Sbjct: 77  QKVVKLKQIEHTLNEKRILQAVN----FPFLVKLEFSFKD-------------------- 112

Query: 304 NPTGGYGRNMSLFILMKKYN-TDLRNYLRERCAQLSMHERVLLF--TQLLEGVTHLNMHR 360
                   N +L+++M+     ++ ++LR R  + S  E    F   Q++    +L+   
Sbjct: 113 --------NSNLYMVMEYVAGGEMFSHLR-RIGRFS--EPHARFYAAQIVLTFEYLHSLD 161

Query: 361 TAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPE 420
             +RDLK +N+L+D  +      + +TDFG +   K      ++     L G    +APE
Sbjct: 162 LIYRDLKPENLLID-QQGY----IQVTDFGFA---KRVKGRTWT-----LCGTPEALAPE 208

Query: 421 VALATPGLFSFVNYSKS-DAWTAGTVAYE-IFGHDNPFYQSARNTDYE--VNALPQLNTN 476
           + L+         Y+K+ D W  G + YE   G+  PF+       YE  V+   +  ++
Sbjct: 209 IILSKG-------YNKAVDWWALGVLIYEMAAGYP-PFFADQPIQIYEKIVSGKVRFPSH 260

Query: 477 VPEVMRRLVAKLLENDPSDR 496
               ++ L+  LL+ D + R
Sbjct: 261 FSSDLKDLLRNLLQVDLTKR 280

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 62.3 bits (152), Expect = 8e-11
 Identities = 33/135 (24%), Positives = 46/135 (34%), Gaps = 19/135 (14%)

Query: 318 LMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSE 377
           L       L + LR+      +        Q+ EG+ +L   R  HRDL + N+LL  + 
Sbjct: 101 LAP--LGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLL--AT 156

Query: 378 DNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGN--VALMAPEVALATPGLFSFVNYS 435
            +      I DFG            Y   +         A  APE        FS     
Sbjct: 157 RDLVK---IGDFGLMRALPQN-DDHYVMQE---HRKVPFAWCAPESLKT--RTFS----H 203

Query: 436 KSDAWTAGTVAYEIF 450
            SD W  G   +E+F
Sbjct: 204 ASDTWMFGVTLWEMF 218

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 62.9 bits (153), Expect = 9e-11
 Identities = 59/289 (20%), Positives = 98/289 (33%), Gaps = 95/289 (32%)

Query: 185 ETLPDVDDVKVD----DIQIGKFIAKGTNAVVYEATFRG-----VEYALKMMFNYSAASN 235
           E +  V  V +      +   + I +G    VY  T        +  A+K          
Sbjct: 74  ELVQAVQHVVIGPSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKS--------- 124

Query: 236 SHAILK--AMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSL 293
               L       E+        L E ++M        HPNV+                  
Sbjct: 125 ----LNRITDIGEVSQF-----LTEGIIMKDFS----HPNVL------------------ 153

Query: 294 IYPSALPARLNPTGGYG----RNMSLFI---LMKKYNTDLRNYLRERCAQLSMHERVLLF 346
                    L      G       S  +    MK  + DLRN++R      ++ + +   
Sbjct: 154 --------SL-----LGICLRSEGSPLVVLPYMK--HGDLRNFIRNETHNPTVKDLIGFG 198

Query: 347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSS---YTNKSGLSMQY 403
            Q+ +G+  L   +  HRDL + N +LD  E  T     + DFG +   Y        ++
Sbjct: 199 LQVAKGMKFLASKKFVHRDLAARNCMLD--EKFTVK---VADFGLARDMYDK------EF 247

Query: 404 SSADIELGGNVAL--MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIF 450
            S   + G  + +  MA E +L T   F+    +KSD W+ G + +E+ 
Sbjct: 248 DSVHNKTGAKLPVKWMALE-SLQT-QKFT----TKSDVWSFGVLLWELM 290

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 62.2 bits (152), Expect = 9e-11
 Identities = 47/225 (20%), Positives = 75/225 (33%), Gaps = 55/225 (24%)

Query: 314 SLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
            L ++ +  + DL+ Y       L          QLL+G+   +     HRDLK  N+L+
Sbjct: 75  KLTLVFEFCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLI 134

Query: 374 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALM---APEVALATPGLFS 430
           + +      +L + +F        GL+  +          V  +    P+V      LF 
Sbjct: 135 NRNG-----ELKLANF--------GLARAFGIPVRCYSAEVVTLWYRPPDV------LFG 175

Query: 431 FVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDY-----------------EVNALPQ 472
              YS S D W+AG +  E+     P +      D                   +  LP 
Sbjct: 176 AKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPD 235

Query: 473 LNT---------------NVPEVMRRLVAKLLENDPSDRPSAELA 502
                              +    R L+  LL+ +P  R SAE A
Sbjct: 236 YKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEA 280

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 62.2 bits (152), Expect = 1e-10
 Identities = 40/226 (17%), Positives = 66/226 (29%), Gaps = 76/226 (33%)

Query: 324 TDLRNYLRERCAQLSMHE-RVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP 382
             + + L      +  H  + + + Q L+ V   + H   HRD+K +NIL+         
Sbjct: 86  HTVLHELDRYQRGVPEHLVKSITW-QTLQAVNFCHKHNCIHRDVKPENILITKHS----- 139

Query: 383 QLVITDFG---------SSYTNKSGLSMQYSSADIELGGNVALM---APEVALATPGLFS 430
            + + DFG           Y ++                 VA     +PE+      L  
Sbjct: 140 VIKLCDFGFARLLTGPSDYYDDE-----------------VATRWYRSPEL------LVG 176

Query: 431 FVNYSKS-DAWTAGTVAYE-------------------IF-------------GHDNPFY 457
              Y    D W  G V  E                   I                 N ++
Sbjct: 177 DTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLIPRHQQVFSTNQYF 236

Query: 458 QSARNTDYE-VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA 502
              +  D E +  L     N+      L+   L  DP++R + E  
Sbjct: 237 SGVKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQL 282

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 61.9 bits (151), Expect = 1e-10
 Identities = 40/209 (19%), Positives = 72/209 (34%), Gaps = 48/209 (22%)

Query: 315 LFILMKKYN-TDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
           L++ M+  N  DL   LR +   L+    V +  Q+   +   +     HRD+K +NIL+
Sbjct: 109 LYVDMRLINGVDLAAMLRRQ-GPLAPPRAVAIVRQIGSALDAAHAAGATHRDVKPENILV 167

Query: 374 DCSEDNTCPQLVITDFG------SSYTNKSGLSMQYSSADIELGGNVALMAPEVAL---A 424
              +        + DFG           + G ++          G +  MAPE      A
Sbjct: 168 SADD-----FAYLVDFGIASATTDEKLTQLGNTV----------GTLYYMAPERFSESHA 212

Query: 425 TPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPF--------YQSARNTDYEVNALPQLNTN 476
           T          ++D +    V YE      P+                  +     +   
Sbjct: 213 TY---------RADIYALTCVLYECLTGSPPYQGDQLSVMGAHINQ---AIPRPSTVRPG 260

Query: 477 VPEVMRRLVAKLLENDPSDRPS--AELAA 503
           +P     ++A+ +  +P DR     +L+A
Sbjct: 261 IPVAFDAVIARGMAKNPEDRYVTCGDLSA 289

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 61.5 bits (150), Expect = 1e-10
 Identities = 28/136 (20%), Positives = 53/136 (38%), Gaps = 19/136 (13%)

Query: 318 LMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSE 377
            +K     L  YL++    +++  ++ +  QL   +  L  +   H ++ + NILL   E
Sbjct: 93  FVK--FGSLDTYLKKNKNCINILWKLEVAKQLAAAMHFLEENTLIHGNVCAKNILLIREE 150

Query: 378 DNTCPQLV---ITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY 434
           D          ++D G        +S+     DI     +  + PE  +  P   +    
Sbjct: 151 DRKTGNPPFIKLSDPG--------ISITVLPKDILQE-RIPWVPPE-CIENPKNLN---- 196

Query: 435 SKSDAWTAGTVAYEIF 450
             +D W+ GT  +EI 
Sbjct: 197 LATDKWSFGTTLWEIC 212

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 62.4 bits (152), Expect = 2e-10
 Identities = 63/318 (19%), Positives = 115/318 (36%), Gaps = 89/318 (27%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFRG-VEYALKMMFNYSAASNSHAILKAMSKELLPLRKPL 254
           + +++ K +  G    V+ AT+    + A+K M              +MS E        
Sbjct: 188 ESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTM-----------KPGSMSVEAF------ 230

Query: 255 RLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMS 314
            L E  +M +++    H  +V +H   T                      P         
Sbjct: 231 -LAEANVMKTLQ----HDKLVKLHAVVTK--------------------EP--------- 256

Query: 315 LFI---LMKKYNTDLRNYLRER-CAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDN 370
           ++I    M      L ++L+    ++  + + +    Q+ EG+  +      HRDL++ N
Sbjct: 257 IYIITEFMA--KGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAAN 314

Query: 371 ILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVAL--MAPEVALATPGL 428
           IL+  S    C    I DFG +   +     +Y++ +   G    +   APE      G 
Sbjct: 315 ILV--SASLVCK---IADFGLA---RVIEDNEYTARE---GAKFPIKWTAPEAINF--GS 361

Query: 429 FSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNT--------NVPEV 480
           F+     KSD W+ G +  EI  +    Y    N +     +  L          N PE 
Sbjct: 362 FT----IKSDVWSFGILLMEIVTYGRIPYPGMSNPE----VIRALERGYRMPRPENCPEE 413

Query: 481 MRRLVAKLLENDPSDRPS 498
           +  ++ +  +N P +RP+
Sbjct: 414 LYNIMMRCWKNRPEERPT 431

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 61.0 bits (149), Expect = 2e-10
 Identities = 49/225 (21%), Positives = 78/225 (34%), Gaps = 56/225 (24%)

Query: 314 SLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
            L ++ +  + DL+  L      L          QLL G+ + +  R  HRDLK  N+L+
Sbjct: 74  RLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLI 133

Query: 374 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALM---APEVALATPGLFS 430
           +        +L I DF        GL+  +     +    +  +   AP+V      L  
Sbjct: 134 NREG-----ELKIADF--------GLARAFGIPVRKYTHEIVTLWYRAPDV------LMG 174

Query: 431 FVNYSKS-DAWTAGTVAYE-------------------IF------------GHDN-PFY 457
              YS + D W+ G +  E                   IF                 P Y
Sbjct: 175 SKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKY 234

Query: 458 QSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA 502
                T YE          + E    L++K+L+ DP+ R +A+ A
Sbjct: 235 DPNF-TVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQA 278

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 68/318 (21%), Positives = 113/318 (35%), Gaps = 78/318 (24%)

Query: 199 QIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRL 256
           ++ + +  GT   VY+      G   A+K+M        +    + + +E+  L+K    
Sbjct: 27  ELVELVGNGTYGQVYKGRHVKTGQLAAIKVM------DVTGDEEEEIKQEINMLKKYSH- 79

Query: 257 NEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSL-I---YPSALPARLNPTGGYGRN 312
                         H N+   + AF    P   D  L +   +            G    
Sbjct: 80  --------------HRNIATYYGAFIKKNPPGMDDQLWLVMEFCG---------AG---- 112

Query: 313 MSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNIL 372
            S+  L+K       N L+E        E       +L G++HL+ H+  HRD+K  N+L
Sbjct: 113 -SVTDLIKNT---KGNTLKEEWIAYICRE-------ILRGLSHLHQHKVIHRDIKGQNVL 161

Query: 373 LDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV 432
           L    +N   +LV  DFG S      +  + +       G    MAPEV        +  
Sbjct: 162 LT---ENAEVKLV--DFGVSAQLDRTVGRRNTFI-----GTPYWMAPEVIACDENPDATY 211

Query: 433 NYSKSDAWTAGTVAYEI------FGHDNPF---YQSARNTDYEVNALPQLN-TNVPEVMR 482
           ++ KSD W+ G  A E+          +P    +   RN        P+L      +  +
Sbjct: 212 DF-KSDLWSLGITAIEMAEGAPPLCDMHPMRALFLIPRNPA------PRLKSKKWSKKFQ 264

Query: 483 RLVAKLLENDPSDRPSAE 500
             +   L  + S RP+ E
Sbjct: 265 SFIESCLVKNHSQRPATE 282

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A Length = 674

 Score = 62.3 bits (151), Expect = 3e-10
 Identities = 33/152 (21%), Positives = 54/152 (35%), Gaps = 20/152 (13%)

Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
           ++  G+  L      +RDLK DN++LD         + I DFG     K    +      
Sbjct: 450 EIAIGLFFLQSKGIIYRDLKLDNVMLDSEG-----HIKIADFGMC---KEN--IWDGVTT 499

Query: 408 IELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYE 466
               G    +APE+    P       Y KS D W  G + YE+     PF     +  ++
Sbjct: 500 KTFCGTPDYIAPEIIAYQP-------YGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQ 552

Query: 467 --VNALPQLNTNVPEVMRRLVAKLLENDPSDR 496
             +        ++ +    +   L+   P  R
Sbjct: 553 SIMEHNVAYPKSMSKEAVAICKGLMTKHPGKR 584

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 40/198 (20%), Positives = 76/198 (38%), Gaps = 43/198 (21%)

Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
            L+ YL +   ++++ +++    Q+ +G+ +L   +  HRDL + N+L+    ++     
Sbjct: 111 SLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLV--ESEHQVK-- 166

Query: 385 VITDFGSS---YTNKSGLSMQYSSADIELGGNVAL--MAPEVALATPGLFSFVNYSKSDA 439
            I DFG +    T+K      Y+  D     +  +   APE  L     F       SD 
Sbjct: 167 -IGDFGLTKAIETDKEY----YTVKD---DRDSPVFWYAPE-CLMQ-SKFY----IASDV 212

Query: 440 WTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRL--------------- 484
           W+ G   +E+  + +    S      ++         V  ++  L               
Sbjct: 213 WSFGVTLHELLTYCDS-DSSPMALFLKMIGPTHGQMTVTRLVNTLKEGKRLPCPPNCPDE 271

Query: 485 VAKLL----ENDPSDRPS 498
           V +L+    E  PS+R S
Sbjct: 272 VYQLMRKCWEFQPSNRTS 289

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 40/164 (24%), Positives = 68/164 (41%), Gaps = 35/164 (21%)

Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLV-ITDFGSSYTNKSGLSMQYSSA 406
           ++L+G+ +L+  +  HRD+K+ N+LL    +      V + DFG +         + +  
Sbjct: 127 EILKGLDYLHSEKKIHRDIKAANVLLSEHGE------VKLADFGVAGQLTDTQIKRNTFV 180

Query: 407 DIELGGNVALMAPEVALATPGLFSFVNY-SKSDAWTAGTVAYEI------FGHDNPF--- 456
                G    MAPEV   +        Y SK+D W+ G  A E+          +P    
Sbjct: 181 -----GTPFWMAPEVIKQSA-------YDSKADIWSLGITAIELARGEPPHSELHPMKVL 228

Query: 457 YQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
           +   +      N  P L  N  + ++  V   L  +PS RP+A+
Sbjct: 229 FLIPK------NNPPTLEGNYSKPLKEFVEACLNKEPSFRPTAK 266

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 70/355 (19%), Positives = 120/355 (33%), Gaps = 89/355 (25%)

Query: 192 DVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLP 249
             +++D++    +  GT   V++  FR  G   A+K M      S +    K +  +L  
Sbjct: 21  QAEINDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQM----RRSGNKEENKRILMDL-- 74

Query: 250 LRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGY 309
                    D+++ S +     P +V     F                            
Sbjct: 75  ---------DVVLKSHD----CPYIVQCFGTFI--------------------------- 94

Query: 310 GRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVL--LFTQLLEGVTHL-NMHRTAHRDL 366
             N  +FI M+   T      +     +   ER+L  +   +++ + +L   H   HRD+
Sbjct: 95  -TNTDVFIAMELMGTCAEKLKKRMQGPIP--ERILGKMTVAIVKALYYLKEKHGVIHRDV 151

Query: 367 KSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP 426
           K  NILL     +   Q+ + DFG      SG  +    A     G  A MAPE     P
Sbjct: 152 KPSNILL-----DERGQIKLCDFGI-----SG-RLVDDKAKDRSAGCAAYMAPER--IDP 198

Query: 427 GLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV------NALPQLNTNV-- 477
              +  +Y  ++D W+ G    E+     P+      TD+EV         P L  ++  
Sbjct: 199 PDPTKPDYDIRADVWSLGISLVELATGQFPY--KNCKTDFEVLTKVLQEEPPLLPGHMGF 256

Query: 478 PEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKH-WLYGATPSHNEIMQWL 531
               +  V   L  D   RP         +L     +H ++        ++  W 
Sbjct: 257 SGDFQSFVKDCLTKDHRKRPKYN------KLL----EHSFIKRYETLEVDVASWF 301

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 26/141 (18%), Positives = 48/141 (34%), Gaps = 32/141 (22%)

Query: 318 LMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSE 377
            +      L +++R+    L     +    Q+ +G+ +L  H   HR+L + N+LL    
Sbjct: 95  YLP--LGSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYLEEHGMVHRNLAARNVLL--KS 150

Query: 378 DNTCPQLVITDFG--------SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF 429
            +      + DFG              S                +  MA E      G +
Sbjct: 151 PSQVQ---VADFGVADLLPPDDKQLLYSEAKTP-----------IKWMALESIHF--GKY 194

Query: 430 SFVNYSKSDAWTAGTVAYEIF 450
           +     +SD W+ G   +E+ 
Sbjct: 195 T----HQSDVWSYGVTVWELM 211

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 60.3 bits (147), Expect = 4e-10
 Identities = 63/323 (19%), Positives = 114/323 (35%), Gaps = 77/323 (23%)

Query: 192 DVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLP 249
           +VK DD++    + +G   VV +      G   A+K +     A+ +    K +  +L  
Sbjct: 3   EVKADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRI----RATVNSQEQKRLLMDL-- 56

Query: 250 LRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGY 309
                    D+ M +V+     P  V  +                            G  
Sbjct: 57  ---------DISMRTVD----CPFTVTFY----------------------------GAL 75

Query: 310 GRNMSLFILMKKYNTDL-RNYLRERCAQLSMHERVL--LFTQLLEGVTHL-NMHRTAHRD 365
            R   ++I M+  +T L + Y +      ++ E +L  +   +++ + HL +     HRD
Sbjct: 76  FREGDVWICMELMDTSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLSVIHRD 135

Query: 366 LKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALAT 425
           +K  N+L+     N   Q+ + DFG S        +     D    G    MAPE     
Sbjct: 136 VKPSNVLI-----NALGQVKMCDFGISGYLVD--DVAKDI-DA---GCKPYMAPERIN-- 182

Query: 426 PGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV------NALPQLNTNV- 477
               +   YS KSD W+ G    E+     P+   +  T ++          PQL  +  
Sbjct: 183 -PELNQKGYSVKSDIWSLGITMIELAILRFPY--DSWGTPFQQLKQVVEEPSPQLPADKF 239

Query: 478 PEVMRRLVAKLLENDPSDRPSAE 500
                   ++ L+ +  +RP+  
Sbjct: 240 SAEFVDFTSQCLKKNSKERPTYP 262

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 60.4 bits (147), Expect = 4e-10
 Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 32/141 (22%)

Query: 318 LMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSE 377
           LM      L +Y+RE    +     +    Q+ +G+ +L   R  HRDL + N+L+    
Sbjct: 97  LMP--FGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLV--KT 152

Query: 378 DNTCPQLVITDFG--------SSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF 429
                   ITDFG            +  G  +            +  MA E ++    ++
Sbjct: 153 PQHVK---ITDFGLAKLLGAEEKEYHAEGGKVP-----------IKWMALE-SILH-RIY 196

Query: 430 SFVNYSKSDAWTAGTVAYEIF 450
           +     +SD W+ G   +E+ 
Sbjct: 197 T----HQSDVWSYGVTVWELM 213

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 61.1 bits (148), Expect = 5e-10
 Identities = 30/135 (22%), Positives = 51/135 (37%), Gaps = 19/135 (14%)

Query: 318 LMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSE 377
           +       L  +L  +  ++ +     L  Q+  G+ +L      HR+L + N+LL    
Sbjct: 416 MAG--GGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNFVHRNLAARNVLL--VN 471

Query: 378 DNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGN--VALMAPEVALATPGLFSFVNYS 435
            +      I+DFG S    +     Y++      G   +   APE        FS    S
Sbjct: 472 RHYAK---ISDFGLSKALGAD-DSYYTARS---AGKWPLKWYAPECINF--RKFS----S 518

Query: 436 KSDAWTAGTVAYEIF 450
           +SD W+ G   +E  
Sbjct: 519 RSDVWSYGVTMWEAL 533

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 60.0 bits (146), Expect = 5e-10
 Identities = 62/328 (18%), Positives = 107/328 (32%), Gaps = 83/328 (25%)

Query: 192 DVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLP 249
           D   +D++    I +G    V +   +  G   A+K +     ++      K +  +L  
Sbjct: 18  DFTAEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRI----RSTVDEKEQKQLLMDL-- 71

Query: 250 LRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGY 309
                    D++M S +     P +V  +                            G  
Sbjct: 72  ---------DVVMRSSD----CPYIVQFY----------------------------GAL 90

Query: 310 GRNMSLFILMKKYNTDLRNYLRE--RCAQLSMHERVL--LFTQLLEGVTHL-NMHRTAHR 364
            R    +I M+  +T    + +         + E +L  +    ++ + HL    +  HR
Sbjct: 91  FREGDCWICMELMSTSFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENLKIIHR 150

Query: 365 DLKSDNILLDCSEDNTCPQLVITDFG-SSYTNKSGLSMQYSSADIELGGNVALMAPEVAL 423
           D+K  NILL     +    + + DFG S         +  S A     G    MAPE   
Sbjct: 151 DIKPSNILL-----DRSGNIKLCDFGISGQ-------LVDSIAKTRDAGCRPYMAPERID 198

Query: 424 ATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV------NALPQLNTN 476
            +    S   Y  +SD W+ G   YE+     P+     N+ ++          PQL+ +
Sbjct: 199 PSA---SRQGYDVRSDVWSLGITLYELATGRFPY--PKWNSVFDQLTQVVKGDPPQLSNS 253

Query: 477 VPEV----MRRLVAKLLENDPSDRPSAE 500
                       V   L  D S RP  +
Sbjct: 254 EEREFSPSFINFVNLCLTKDESKRPKYK 281

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 59.6 bits (145), Expect = 6e-10
 Identities = 44/165 (26%), Positives = 66/165 (40%), Gaps = 30/165 (18%)

Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLV-ITDFGSSYTNKSGLSMQYSSA 406
           Q+LE +  L+  R  HRDLK+ N+L+    D      + + DFG S  N   L  + S  
Sbjct: 125 QMLEALNFLHSKRIIHRDLKAGNVLMTLEGD------IRLADFGVSAKNLKTLQKRDSFI 178

Query: 407 DIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEI------FGHDNPF---Y 457
                G    MAPEV +      +  +Y K+D W+ G    E+          NP     
Sbjct: 179 -----GTPYWMAPEVVMCETMKDTPYDY-KADIWSLGITLIEMAQIEPPHHELNPMRVLL 232

Query: 458 QSARNTDYEVNALPQLN--TNVPEVMRRLVAKLLENDPSDRPSAE 500
           + A+      +  P L   +      R  +   L+ +P  RPSA 
Sbjct: 233 KIAK------SDPPTLLTPSKWSVEFRDFLKIALDKNPETRPSAA 271

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... Length = 337

 Score = 59.9 bits (146), Expect = 7e-10
 Identities = 38/153 (24%), Positives = 65/153 (42%), Gaps = 22/153 (14%)

Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
           +++  + +L+     +RD+K +N++LD  + +    + ITDFG     K G  +   +  
Sbjct: 113 EIVSALEYLHSRDVVYRDIKLENLMLD-KDGH----IKITDFGLC---KEG--ISDGATM 162

Query: 408 IELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYE-IFGHDNPFYQSARNTDY 465
               G    +APEV            Y ++ D W  G V YE + G   PFY       +
Sbjct: 163 KTFCGTPEYLAPEVLEDND-------YGRAVDWWGLGVVMYEMMCGR-LPFYNQDHERLF 214

Query: 466 E--VNALPQLNTNVPEVMRRLVAKLLENDPSDR 496
           E  +    +    +    + L+A LL+ DP  R
Sbjct: 215 ELILMEEIRFPRTLSPEAKSLLAGLLKKDPKQR 247

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} Length = 353

 Score = 59.9 bits (146), Expect = 7e-10
 Identities = 35/153 (22%), Positives = 58/153 (37%), Gaps = 22/153 (14%)

Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
           +++  +  L+     +RDLK DN+LLD           + DFG     K G  +      
Sbjct: 132 EIISALMFLHDKGIIYRDLKLDNVLLDHEG-----HCKLADFGMC---KEG--ICNGVTT 181

Query: 408 IELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYE-IFGHDNPFYQSARNTDY 465
               G    +APE+            Y  + D W  G + YE + GH  PF     +  +
Sbjct: 182 ATFCGTPDYIAPEILQEML-------YGPAVDWWAMGVLLYEMLCGH-APFEAENEDDLF 233

Query: 466 E--VNALPQLNTNVPEVMRRLVAKLLENDPSDR 496
           E  +N      T + E    ++   +  +P+ R
Sbjct: 234 EAILNDEVVYPTWLHEDATGILKSFMTKNPTMR 266

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* Length = 345

 Score = 59.5 bits (145), Expect = 8e-10
 Identities = 39/153 (25%), Positives = 61/153 (39%), Gaps = 22/153 (14%)

Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
           +++ G+  L+     +RDLK DNILLD         + I DFG     K    M   +  
Sbjct: 126 EIILGLQFLHSKGIVYRDLKLDNILLDKDG-----HIKIADFGMC---KEN--MLGDAKT 175

Query: 408 IELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYE-IFGHDNPFYQSARNTDY 465
               G    +APE+ L          Y+ S D W+ G + YE + G  +PF+       +
Sbjct: 176 NTFCGTPDYIAPEILLGQK-------YNHSVDWWSFGVLLYEMLIGQ-SPFHGQDEEELF 227

Query: 466 E--VNALPQLNTNVPEVMRRLVAKLLENDPSDR 496
                  P     + +  + L+ KL   +P  R
Sbjct: 228 HSIRMDNPFYPRWLEKEAKDLLVKLFVREPEKR 260

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 Length = 318

 Score = 59.1 bits (144), Expect = 1e-09
 Identities = 73/315 (23%), Positives = 124/315 (39%), Gaps = 83/315 (26%)

Query: 193 VKVDDIQIGKFIAKGTNAVVYEATFRGVE--YALKMMFNYSAASNSHAILKAMSKELLPL 250
             + D QI + +  G+   V+    R     YA+K++                 KE++  
Sbjct: 3   YSLQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVL----------------KKEIVVR 46

Query: 251 RKPLR--LNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGG 308
            K +    +E ++++ V     HP ++ M   F D                         
Sbjct: 47  LKQVEHTNDERLMLSIVT----HPFIIRMWGTFQD------------------------- 77

Query: 309 YGRNMSLFILMKKYN-TDLRNYLRERCAQLSMHERVLLF--TQLLEGVTHLNMHRTAHRD 365
                 +F++M      +L + LR +  +      V  F   ++   + +L+     +RD
Sbjct: 78  ---AQQIFMIMDYIEGGELFSLLR-KSQRFP--NPVAKFYAAEVCLALEYLHSKDIIYRD 131

Query: 366 LKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALAT 425
           LK +NILLD    +    + ITDFG +   K    + Y+     L G    +APEV    
Sbjct: 132 LKPENILLD-KNGH----IKITDFGFA---KYVPDVTYT-----LCGTPDYIAPEVVSTK 178

Query: 426 PGLFSFVNYSKS-DAWTAGTVAYE-IFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVM 481
           P       Y+KS D W+ G + YE + G+  PFY S     YE  +NA  +      E +
Sbjct: 179 P-------YNKSIDWWSFGILIYEMLAGYT-PFYDSNTMKTYEKILNAELRFPPFFNEDV 230

Query: 482 RRLVAKLLENDPSDR 496
           + L+++L+  D S R
Sbjct: 231 KDLLSRLITRDLSQR 245

>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of P90 ribosomal S6 kinase 2, ATP- binding, nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A* Length = 325

 Score = 59.1 bits (144), Expect = 1e-09
 Identities = 40/152 (26%), Positives = 65/152 (42%), Gaps = 20/152 (13%)

Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
           +L   + HL+     +RDLK +NILLD  E +    + +TDFG S  +       YS   
Sbjct: 134 ELALALDHLHSLGIIYRDLKPENILLD-EEGH----IKLTDFGLSKESIDHEKKAYS--- 185

Query: 408 IELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYE 466
               G V  MAPEV            +++S D W+ G + +E+     PF    R     
Sbjct: 186 --FCGTVEYMAPEVVNRRG-------HTQSADWWSFGVLMFEMLTGTLPFQGKDRKETMT 236

Query: 467 --VNALPQLNTNVPEVMRRLVAKLLENDPSDR 496
             + A   +   +    + L+  L + +P++R
Sbjct: 237 MILKAKLGMPQFLSPEAQSLLRMLFKRNPANR 268

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 58.8 bits (143), Expect = 1e-09
 Identities = 66/303 (21%), Positives = 102/303 (33%), Gaps = 104/303 (34%)

Query: 183 QVETLPDVDD---VKVDDIQIGKFIAKGTNAVVYEATFRGVEY-------ALKMMFNYSA 232
             E LP          D +++GK + +G    V EA   G++        A+KM      
Sbjct: 11  HCERLPYDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKM------ 64

Query: 233 ASNSHAILK--AMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPD 290
                  LK  A   E   L     ++E  ++    ++  H NVV +  A T        
Sbjct: 65  -------LKEGATHSEHRAL-----MSELKILI---HIGHHLNVVNLLGACTK------- 102

Query: 291 SSLIYPSALPARLNPTGGYGRNMSLFI---LMKKYNTDLRNYLRER--------CAQLSM 339
                                   L +     K    +L  YLR +         A   +
Sbjct: 103 --------------------PGGPLMVIVEFCK--FGNLSTYLRSKRNEFVPYKVAPEDL 140

Query: 340 HERVLLFTQLL-------EGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSS 392
           ++  L    L+       +G+  L   +  HRDL + NILL  SE N      I DFG  
Sbjct: 141 YKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILL--SEKNVVK---ICDFG-- 193

Query: 393 YTNKSGLSMQYSSADI-ELGGNVAL----MAPEVALATPGLFSFVNYSKSDAWTAGTVAY 447
                 L+            G+  L    MAPE  +    +++     +SD W+ G + +
Sbjct: 194 ------LARDIYKDPDYVRKGDARLPLKWMAPE-TIFD-RVYT----IQSDVWSFGVLLW 241

Query: 448 EIF 450
           EIF
Sbjct: 242 EIF 244

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* Length = 373

 Score = 58.8 bits (143), Expect = 2e-09
 Identities = 49/155 (31%), Positives = 76/155 (49%), Gaps = 26/155 (16%)

Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
           ++   + +L+     +RDLK +NILLD S+ +    +V+TDFG     K    ++++S  
Sbjct: 147 EIASALGYLHSLNIVYRDLKPENILLD-SQGH----IVLTDFGLC---KEN--IEHNSTT 196

Query: 408 IELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYE-IFGHDNPFYQSARNTD- 464
               G    +APEV    P       Y ++ D W  G V YE ++G   PFY  +RNT  
Sbjct: 197 STFCGTPEYLAPEVLHKQP-------YDRTVDWWCLGAVLYEMLYGL-PPFY--SRNTAE 246

Query: 465 -YE--VNALPQLNTNVPEVMRRLVAKLLENDPSDR 496
            Y+  +N   QL  N+    R L+  LL+ D + R
Sbjct: 247 MYDNILNKPLQLKPNITNSARHLLEGLLQKDRTKR 281

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 58.4 bits (142), Expect = 2e-09
 Identities = 58/320 (18%), Positives = 110/320 (34%), Gaps = 94/320 (29%)

Query: 199 QIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRL 256
            +G  + +G+   V E          A+K++               + KE+  LR+ LR 
Sbjct: 8   LMGDLLGEGSYGKVKEVLDSETLCRRAVKIL-KKKKLRRIPNGEANVKKEIQLLRR-LR- 64

Query: 257 NEDMLMNSVENLPPHPNVV----VMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRN 312
                         H NV+    V++                                  
Sbjct: 65  --------------HKNVIQLVDVLYNE-----------------------EKQ------ 81

Query: 313 MSLFILM---KKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSD 369
             ++++M        ++ + + E+  +  + +    F QL++G+ +L+     H+D+K  
Sbjct: 82  -KMYMVMEYCVCGMQEMLDSVPEK--RFPVCQAHGYFCQLIDGLEYLHSQGIVHKDIKPG 138

Query: 370 NILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELG---GNVALMAPEVALATP 426
           N+LL      T   L I+  G +        +   +AD       G+ A   PE+A    
Sbjct: 139 NLLLT--TGGT---LKISALGVAEA------LHPFAADDTCRTSQGSPAFQPPEIANGLD 187

Query: 427 GLFSFVNYS--KSDAWTAGTVAYEI------FGHDNPF--YQSARNTDYEVNALPQLNTN 476
                  +S  K D W+AG   Y I      F  DN +  +++     Y    +P    +
Sbjct: 188 T------FSGFKVDIWSAGVTLYNITTGLYPFEGDNIYKLFENIGKGSYA---IPG---D 235

Query: 477 VPEVMRRLVAKLLENDPSDR 496
               +  L+  +LE +P+ R
Sbjct: 236 CGPPLSDLLKGMLEYEPAKR 255

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 60/284 (21%), Positives = 102/284 (35%), Gaps = 103/284 (36%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFRGVEY-------ALKMMFNYSAASNSHAILK--AMSKE 246
           + I + + + +G+  +VYE   +GV         A+K              +   A  +E
Sbjct: 25  EKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKT-------------VNEAASMRE 71

Query: 247 LLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPT 306
            +       LNE  +M          +VV                          RL   
Sbjct: 72  RIEF-----LNEASVMKEFN----CHHVV--------------------------RL--- 93

Query: 307 GGYG---RNMSLFI---LMKKYNTDLRNYLRER---------CAQLSMHERVLLFTQLLE 351
              G   +     +   LM     DL++YLR            A  S+ + + +  ++ +
Sbjct: 94  --LGVVSQGQPTLVIMELMT--RGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIAD 149

Query: 352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELG 411
           G+ +LN ++  HRDL + N ++  +ED T     I DFG        ++      D    
Sbjct: 150 GMAYLNANKFVHRDLAARNCMV--AEDFTVK---IGDFG--------MTRDIYETDYYRK 196

Query: 412 GNVAL-----MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIF 450
           G   L     M+PE +L   G+F+    + SD W+ G V +EI 
Sbjct: 197 GGKGLLPVRWMSPE-SLKD-GVFT----TYSDVWSFGVVLWEIA 234

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score = 59.0 bits (143), Expect = 2e-09
 Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 23/154 (14%)

Query: 348 QLLEGVTHL-NMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSA 406
           +++  + +L +     +RDLK +N++LD  + +    + ITDFG     K G  ++  + 
Sbjct: 256 EIVSALDYLHSEKNVVYRDLKLENLMLD-KDGH----IKITDFGLC---KEG--IKDGAT 305

Query: 407 DIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYE-IFGHDNPFYQSARNTD 464
                G    +APEV            Y ++ D W  G V YE + G   PFY       
Sbjct: 306 MKTFCGTPEYLAPEVLEDND-------YGRAVDWWGLGVVMYEMMCGR-LPFYNQDHEKL 357

Query: 465 YE--VNALPQLNTNVPEVMRRLVAKLLENDPSDR 496
           +E  +    +    +    + L++ LL+ DP  R
Sbjct: 358 FELILMEEIRFPRTLGPEAKSLLSGLLKKDPKQR 391

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* Length = 327

 Score = 57.9 bits (141), Expect = 2e-09
 Identities = 34/152 (22%), Positives = 68/152 (44%), Gaps = 20/152 (13%)

Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
           ++   + HL+     +RDLK +NI+L+  + +    + +TDFG     K   S+   +  
Sbjct: 129 EISMALGHLHQKGIIYRDLKPENIMLN-HQGH----VKLTDFGLC---K--ESIHDGTVT 178

Query: 408 IELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYE 466
               G +  MAPE+ + +        ++++ D W+ G + Y++     PF    R    +
Sbjct: 179 HTFCGTIEYMAPEILMRSG-------HNRAVDWWSLGALMYDMLTGAPPFTGENRKKTID 231

Query: 467 --VNALPQLNTNVPEVMRRLVAKLLENDPSDR 496
             +     L   + +  R L+ KLL+ + + R
Sbjct: 232 KILKCKLNLPPYLTQEARDLLKKLLKRNAASR 263

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.5 bits (143), Expect = 2e-09
 Identities = 42/247 (17%), Positives = 74/247 (29%), Gaps = 52/247 (21%)

Query: 355 HLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNV 414
           H++   T     +  +IL    +        + +F          S+  S  +I+   ++
Sbjct: 6   HMDFE-TGEHQYQYKDILSVFEDA------FVDNFDCKDVQDMPKSI-LSKEEID---HI 54

Query: 415 ALMAPEVALATPGLF------------SFV------NYSKSDAWTAGTVAYEIFGHDNPF 456
            +M+ +    T  LF             FV      NY     +    +  E        
Sbjct: 55  -IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK----FLMSPIKTEQRQPSMMT 109

Query: 457 --YQSARNTDYEVN-ALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE---------LAAT 504
             Y   R+  Y  N    + N +  +   +L   LLE  P+     +         +A  
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD 169

Query: 505 VCQLYLWAPK-----HWL-YGATPSHNEIMQWLLTLTTKVLCTGVSYGGHVRRTFVEYQL 558
           VC  Y    K      WL      S   +++ L  L  ++     S   H     +    
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 559 ISTFLKR 565
           I   L+R
Sbjct: 230 IQAELRR 236

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 6e-09
 Identities = 83/523 (15%), Positives = 151/523 (28%), Gaps = 168/523 (32%)

Query: 131 QQLLYKDNSKPFL-AFVGVSLASGTGILTKEDEFEGVCWEIRHAVNNMFDKLVQVETLPD 189
            Q  YKD    F  AFV              D F+  C +++       D    + +  +
Sbjct: 14  HQYQYKDILSVFEDAFV--------------DNFD--CKDVQ-------DMPKSILSKEE 50

Query: 190 VDDV--KVDDIQ-----IGKFIAKGTNAVVYEATFRGVEYALKMMFNYS-AASNSHAILK 241
           +D +    D +          ++K    V     F  VE  L++  NY    S      +
Sbjct: 51  IDHIIMSKDAVSGTLRLFWTLLSKQEEMV---QKF--VEEVLRI--NYKFLMSPIKTEQR 103

Query: 242 AMS---KELLPLRKPL-------------RLNE-DMLMNSVENLPPHPNVVV--M----- 277
             S   +  +  R  L             RL     L  ++  L P  NV++  +     
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163

Query: 278 ---------------HFAFTDFVPSI-----PDSSLIYPSALPARLNPTGGYGRNMSLFI 317
                             F  F  ++     P++ L     L  +++P      + S  I
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223

Query: 318 LMKKYNTD-----LRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNIL 372
              K         LR  L+ +      +E  LL   +L              ++++    
Sbjct: 224 ---KLRIHSIQAELRRLLKSK-----PYENCLL---VL-------------LNVQNAKAW 259

Query: 373 LDCSE--DNTCPQLVIT------DFGSSYTNKSGLSMQYSSADIELGGNVALMA------ 418
                  + +C  L+ T      DF S+ T    +S+ + S  +      +L+       
Sbjct: 260 ----NAFNLSCKILLTTRFKQVTDFLSAATTTH-ISLDHHSMTLTPDEVKSLLLKYLDCR 314

Query: 419 ----PEVALAT-PGLFSFV------------NYSKSDAWTAGTVAYEIFGHDNPFYQSAR 461
               P   L T P   S +            N+   +     T+         P      
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374

Query: 462 NTDYEVNALPQLNTNVPE-VMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGA 520
                V   P  + ++P  ++  +   ++++D        +       Y    K      
Sbjct: 375 FDRLSV--FPP-SAHIPTILLSLIWFDVIKSDV------MVVVNKLHKYSLVEKQPKEST 425

Query: 521 TPSHNEIMQWLLTLTTKVLCTGVSYGGHVRRTFVE-YQLISTF 562
               +      + L  KV      Y  H  R+ V+ Y +  TF
Sbjct: 426 ISIPS------IYLELKVKLEN-EYALH--RSIVDHYNIPKTF 459

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 1e-07
 Identities = 79/617 (12%), Positives = 177/617 (28%), Gaps = 156/617 (25%)

Query: 11  YHNGKLLV----RYIKPLQPGHKIEFLTQPPATSSGQGRLSAPAGHPI-QTYF------- 58
           Y    +L      ++         +      +       + +     +  T         
Sbjct: 16  YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK--DAVSGTLRLFWTLLS 73

Query: 59  --QNARKLFVNSLLNRVTNSMASDLRRKTIQQLLYKDNSKPFLAFVGVSLASGTGILTNR 116
             +   + FV  +L      + S ++ +  Q  +    ++ ++      L +   +    
Sbjct: 74  KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM---MTRMYIEQRDR-LYNDNQVFAKY 129

Query: 117 -VTNSMASDLRRK---TLQQLLYKDNSKPFLAFVGVSLASGTG--ILTKE--------DE 162
            V+       R +    L+Q L +      +   GV    G+G   +  +         +
Sbjct: 130 NVS-------RLQPYLKLRQALLELRPAKNVLIDGV---LGSGKTWVALDVCLSYKVQCK 179

Query: 163 FE-GVCW-EIRHAVNNMFDKLVQVETLPDVDDVKVDDIQIGKFIAKGTNAVVYEATFRGV 220
            +  + W  +++  N+    L  ++ L      ++D      + ++  ++   +     +
Sbjct: 180 MDFKIFWLNLKN-CNSPETVLEMLQKLL----YQID----PNWTSRSDHSSNIKLRIHSI 230

Query: 221 EYALKMMFNYSAASNSHAIL---------KAM---SKELLPLRKPLRLNEDMLMNSVENL 268
           +  L+ +       N   +L          A     K LL  R   +   D L  +    
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF--KQVTDFLSAATTT- 287

Query: 269 PPHPNVVVMHFAFTDFVPSIPDSSL--------IYPSALPA---RLNPTGGYGRNMSLF- 316
             H ++       T      PD             P  LP      NP     R +S+  
Sbjct: 288 --HISLDHHSMTLT------PDEVKSLLLKYLDCRPQDLPREVLTTNP-----RRLSIIA 334

Query: 317 ILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDL----KSDNI- 371
             ++       N+    C +L+    +     +LE       +R     L     S +I 
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLT--TIIESSLNVLEP----AEYRKMFDRLSVFPPSAHIP 388

Query: 372 -----LLDCSEDNTCPQLVITDF-GSSYTNKSGLSMQYSSADIELGGNVALMAPEVALAT 425
                L+      +   +V+      S   K       S   I L         E+ +  
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL---------ELKVKL 439

Query: 426 PGLF----SFVN-YSKSDAWTAGTVAYEIFGHDNPFYQ-------SARNTDYEVNALPQL 473
              +    S V+ Y+    + +  +       D  FY        +  + +  +     +
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIPPYL--DQYFYSHIGHHLKNIEHPE-RMTLFRMV 496

Query: 474 NTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQL--YLWAPKHWLYGATPSH------- 524
             +     R L  K+  +  +   S  +  T+ QL  Y     +       +        
Sbjct: 497 FLD----FRFLEQKIRHDSTAWNASGSILNTLQQLKFYK---PY----ICDNDPKYERLV 545

Query: 525 NEIMQWLLTLTTKVLCT 541
           N I+ +L  +   ++C+
Sbjct: 546 NAILDFLPKIEENLICS 562

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 64/315 (20%), Positives = 106/315 (33%), Gaps = 102/315 (32%)

Query: 168 WEIRHAVNNMFDKLVQVETLPDVDD--VKVDDIQIGKFIAKGTNAVVYEATFRGVEY--- 222
           W+I  +        +    LP  +      +++Q GK +  G    V EAT  G+     
Sbjct: 16  WKIIESYEGNSYTFIDPTQLPYNEKWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDA 75

Query: 223 ----ALKMMFNYSAASNSHAILK--AMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVV 276
               A+KM             LK  A + E   L     ++E  +M    +L  H N+V 
Sbjct: 76  VLKVAVKM-------------LKSTAHADEKEAL-----MSELKIM---SHLGQHENIVN 114

Query: 277 MHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFI---LMKKYNTDLRNYLRER 333
           +  A T   P                            + +          DL N+LR +
Sbjct: 115 LLGACTHGGP----------------------------VLVITEYCC--YGDLLNFLRRK 144

Query: 334 ------CAQLSMHERVLLFTQLL-------EGVTHLNMHRTAHRDLKSDNILLDCSEDNT 380
                     ++         LL       +G+  L      HRD+ + N+LL  +  + 
Sbjct: 145 SRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLL--TNGHV 202

Query: 381 CPQLVITDFGSSYTNKSGLSMQ-YSSADIELGGNVAL----MAPEVALATPGLFSFVNYS 435
                I DFG        L+    + ++  + GN  L    MAPE       +++     
Sbjct: 203 AK---IGDFG--------LARDIMNDSNYIVKGNARLPVKWMAPESIFD--CVYT----V 245

Query: 436 KSDAWTAGTVAYEIF 450
           +SD W+ G + +EIF
Sbjct: 246 QSDVWSYGILLWEIF 260

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* Length = 353

 Score = 58.0 bits (141), Expect = 3e-09
 Identities = 33/152 (21%), Positives = 54/152 (35%), Gaps = 20/152 (13%)

Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
           ++  G+  L      +RDLK DN++LD         + I DFG     K    +      
Sbjct: 129 EIAIGLFFLQSKGIIYRDLKLDNVMLDSEG-----HIKIADFGMC---KEN--IWDGVTT 178

Query: 408 IELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYE 466
               G    +APE+    P       Y KS D W  G + YE+     PF     +  ++
Sbjct: 179 KTFCGTPDYIAPEIIAYQP-------YGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQ 231

Query: 467 --VNALPQLNTNVPEVMRRLVAKLLENDPSDR 496
             +        ++ +    +   L+   P  R
Sbjct: 232 SIMEHNVAYPKSMSKEAVAICKGLMTKHPGKR 263

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 68/319 (21%), Positives = 115/319 (36%), Gaps = 113/319 (35%)

Query: 171 RHAVNNMFDKLVQVETLPDVDD--VKVDDIQIGKFIAKGTNAVVYEATFRGVEY------ 222
            H+ + M   + + E LP+        D + +GK + +G    V  A   G++       
Sbjct: 9   HHSQDPMLAGVSEYE-LPEDPKWEFPRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEA 67

Query: 223 ---ALKMMFNYSAASNSHAILK--AMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVM 277
              A+KM             LK  A  K+L  L     ++E  +M   + +  H N++  
Sbjct: 68  VTVAVKM-------------LKDDATEKDLSDL-----VSEMEMM---KMIGKHKNII-- 104

Query: 278 HFAFTDFVPSIPDSSLIYPSALPARLNPTGGYG---RNMSLFI---LMKKYNTDLRNYLR 331
                                    L      G   ++  L++          +LR YLR
Sbjct: 105 ------------------------NL-----LGACTQDGPLYVIVEYAS--KGNLREYLR 133

Query: 332 ER--------CAQLSMHERVLLFTQLL-------EGVTHLNMHRTAHRDLKSDNILLDCS 376
            R             + E  + F  L+        G+ +L   +  HRDL + N+L+  +
Sbjct: 134 ARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLV--T 191

Query: 377 EDNTCPQLVITDFGSSYTNKSGLSMQYSSADI-ELGGNVAL----MAPEVALATPGLFSF 431
           E+N      I DFG        L+   ++ D  +   N  L    MAPE AL    +++ 
Sbjct: 192 ENNVMK---IADFG--------LARDINNIDYYKKTTNGRLPVKWMAPE-ALFD-RVYT- 237

Query: 432 VNYSKSDAWTAGTVAYEIF 450
               +SD W+ G + +EIF
Sbjct: 238 ---HQSDVWSFGVLMWEIF 253

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 70/318 (22%), Positives = 111/318 (34%), Gaps = 101/318 (31%)

Query: 204 IAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDML 261
           I +G +  VY A     G E A++ M           + +   KEL+       +NE ++
Sbjct: 28  IGQGASGTVYTAMDVATGQEVAIRQM----------NLQQQPKKELI-------INEILV 70

Query: 262 MNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKK 321
           M   +    +PN+V                                 Y     L+++M+ 
Sbjct: 71  MRENK----NPNIVNYL----------------------------DSYLVGDELWVVME- 97

Query: 322 Y-----NTDL--RNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLD 374
           Y      TD+     + E        E        L+ +  L+ ++  HRD+KSDNILL 
Sbjct: 98  YLAGGSLTDVVTETCMDEGQIAAVCRE-------CLQALEFLHSNQVIHRDIKSDNILLG 150

Query: 375 CSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY 434
                    + +TDFG         S + +       G    MAPEV            Y
Sbjct: 151 MDGS-----VKLTDFGFCAQITPEQSKRSTMV-----GTPYWMAPEVVTRKA-------Y 193

Query: 435 -SKSDAWTAGTVAYEI------FGHDNPF---YQSARNTDYEVNALPQLN--TNVPEVMR 482
             K D W+ G +A E+      + ++NP    Y  A       N  P+L     +  + R
Sbjct: 194 GPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIAT------NGTPELQNPEKLSAIFR 247

Query: 483 RLVAKLLENDPSDRPSAE 500
             + + LE D   R SA+
Sbjct: 248 DFLNRCLEMDVEKRGSAK 265

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 57.3 bits (139), Expect = 4e-09
 Identities = 62/291 (21%), Positives = 94/291 (32%), Gaps = 108/291 (37%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFRGVEY-------ALKMMFNYSAASNSHAILK--AMSKE 246
           + +  GK +  G    V EAT  G+         A+KM             LK  A   E
Sbjct: 23  NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKM-------------LKPSAHLTE 69

Query: 247 LLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPT 306
              L     ++E  ++     L  H N+V                           L   
Sbjct: 70  REAL-----MSELKVL---SYLGNHMNIV--------------------------NL--- 92

Query: 307 GGYG---RNMSLFILMKKY--NTDLRNYLRER----------CAQLSMHERVLLFTQLL- 350
              G         ++ + Y    DL N+LR +           A +   E  L    LL 
Sbjct: 93  --LGACTIGGPTLVITE-YCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLS 149

Query: 351 ------EGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYS 404
                 +G+  L      HRDL + NILL  +         I DF        GL+    
Sbjct: 150 FSYQVAKGMAFLASKNCIHRDLAARNILL--THGRITK---ICDF--------GLARDIK 196

Query: 405 SADI-ELGGNVAL----MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIF 450
           +     + GN  L    MAPE ++    +++     +SD W+ G   +E+F
Sbjct: 197 NDSNYVVKGNARLPVKWMAPE-SIFN-CVYT----FESDVWSYGIFLWELF 241

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 57.0 bits (138), Expect = 4e-09
 Identities = 35/166 (21%), Positives = 57/166 (34%), Gaps = 37/166 (22%)

Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLV-ITDFGSSYTNKSGLSMQYSSA 406
             L+G+ +L+  R  HRD+K+ NILL+            + DFG +      ++ + +  
Sbjct: 133 STLKGLEYLHFMRKIHRDIKAGNILLNTEGH------AKLADFGVAGQLTDTMAKRNTVI 186

Query: 407 DIELGGNVALMAPEVALATPGLFSFVNY-SKSDAWTAGTVAYEI------FGHDNP---F 456
                G    MAPEV            Y   +D W+ G  A E+      +   +P    
Sbjct: 187 -----GTPFWMAPEVIQEIG-------YNCVADIWSLGITAIEMAEGKPPYADIHPMRAI 234

Query: 457 YQSARNTDYEVNALPQL--NTNVPEVMRRLVAKLLENDPSDRPSAE 500
           +          N  P         +     V + L   P  R +A 
Sbjct: 235 FMIPT------NPPPTFRKPELWSDNFTDFVKQCLVKSPEQRATAT 274

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 57.3 bits (139), Expect = 4e-09
 Identities = 76/346 (21%), Positives = 120/346 (34%), Gaps = 98/346 (28%)

Query: 199 QIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLN 257
            + +FI+ G+   V       G+  A+K +FN     +    +  +S   L  R  LR  
Sbjct: 25  TVQRFISSGSYGAVCAGVDSEGIPVAIKRVFN---TVSDGRTVNILSDSFLCKRV-LR-- 78

Query: 258 EDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFI 317
           E  L+N       HPN++ +   F       P    +Y                   +  
Sbjct: 79  EIRLLNHFH----HPNILGLRDIFV--HFEEPAMHKLY------------------LVTE 114

Query: 318 LMKKYNTDLRNYLRERCAQLS-MHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL--D 374
           LM    TDL   + ++   +S  H +  ++  +L G+  L+     HRDL   NILL  +
Sbjct: 115 LM---RTDLAQVIHDQRIVISPQHIQYFMY-HILLGLHVLHEAGVVHRDLHPGNILLADN 170

Query: 375 CSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALM---APEVALATPGLFSF 431
                    + I DF         L+ + ++ D      V      APE+      +  F
Sbjct: 171 N-------DITICDF--------NLAREDTA-DANKTHYVTHRWYRAPEL------VMQF 208

Query: 432 VNYSKS-DAWTAGTVAYEIFG--------------------------HDNPFYQSARNTD 464
             ++K  D W+AG V  E+F                            D   + S    D
Sbjct: 209 KGFTKLVDMWSAGCVMAEMFNRKALFRGSTFYNQLNKIVEVVGTPKIEDVVMFSSPSARD 268

Query: 465 YEVNALP--------QLNTNVPEVMRRLVAKLLENDPSDRPSAELA 502
           Y  N+L          +      V   L+AK+LE +P  R S E A
Sbjct: 269 YLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQA 314

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 57.2 bits (139), Expect = 4e-09
 Identities = 48/274 (17%), Positives = 81/274 (29%), Gaps = 81/274 (29%)

Query: 271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYL 330
           H NVV +                            +       S++++      DL   L
Sbjct: 75  HENVVNLIEICRT--------------------KASPYNRCKGSIYLVFDFCEHDLAGLL 114

Query: 331 RERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG 390
                + ++ E   +   LL G+ +++ ++  HRD+K+ N+L+          L + DF 
Sbjct: 115 SNVLVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLI-----TRDGVLKLADF- 168

Query: 391 SSYTNKSGLSMQYSSADIELGGN-----VAL--MAPEVALATPGLFSFVNYSKS-DAWTA 442
                  GL+  +S A            V L    PE+ L         +Y    D W A
Sbjct: 169 -------GLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGER------DYGPPIDLWGA 215

Query: 443 GTVAYE-------------------IF------------GHDN-PFYQSARNTDYEVNAL 470
           G +  E                   I               DN   Y+       +   +
Sbjct: 216 GCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKV 275

Query: 471 PQL--NTNVPEVMRRLVAKLLENDPSDRPSAELA 502
                          L+ KLL  DP+ R  ++ A
Sbjct: 276 KDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDA 309

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 57.0 bits (138), Expect = 5e-09
 Identities = 72/327 (22%), Positives = 116/327 (35%), Gaps = 80/327 (24%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKP 253
           DD ++ + I  G  AVV  A       + A+K +            L+     +  L K 
Sbjct: 15  DDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRI-----------NLEKCQTSMDELLK- 62

Query: 254 LRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSL-I---YPSALPARLNPTGGY 309
               E   M+       HPN+V  + +F           L +     S         GG 
Sbjct: 63  ----EIQAMSQCH----HPNIVSYYTSFVV------KDELWLVMKLLS---------GG- 98

Query: 310 GRNMSLFILMKKYNTDLR---NYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDL 366
               S+  ++K            L E      + E       +LEG+ +L+ +   HRD+
Sbjct: 99  ----SVLDIIKHIVAKGEHKSGVLDESTIATILRE-------VLEGLEYLHKNGQIHRDV 147

Query: 367 KSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP 426
           K+ NILL   ED +     I DFG S    +G  +  +       G    MAPEV     
Sbjct: 148 KAGNILLG--EDGSVQ---IADFGVSAFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVR 202

Query: 427 GLFSFVNY-SKSDAWTAGTVAYEI------FGHDNP---FYQSARN---TDYEVNALPQL 473
           G      Y  K+D W+ G  A E+      +    P      + +N   +        ++
Sbjct: 203 G------YDFKADIWSFGITAIELATGAAPYHKYPPMKVLMLTLQNDPPSLETGVQDKEM 256

Query: 474 NTNVPEVMRRLVAKLLENDPSDRPSAE 500
                +  R++++  L+ DP  RP+A 
Sbjct: 257 LKKYGKSFRKMISLCLQKDPEKRPTAA 283

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 56.5 bits (137), Expect = 6e-09
 Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 20/135 (14%)

Query: 318 LMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSE 377
           + +     L  YL++    +     + L  Q+  G+ +L      HRDL + N+LL    
Sbjct: 98  MAE--LGPLNKYLQQN-RHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLL--VT 152

Query: 378 DNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVAL--MAPEVALATPGLFSFVNYS 435
            +      I+DFG S   ++  +   +       G   +   APE        FS    S
Sbjct: 153 QHYAK---ISDFGLSKALRADENYYKAQT----HGKWPVKWYAPECINY--YKFS----S 199

Query: 436 KSDAWTAGTVAYEIF 450
           KSD W+ G + +E F
Sbjct: 200 KSDVWSFGVLMWEAF 214

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 56.6 bits (137), Expect = 7e-09
 Identities = 47/198 (23%), Positives = 70/198 (35%), Gaps = 45/198 (22%)

Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
            LR+YL      + + + +L   Q+ EG+ +L+     HRDL + N+LL    D      
Sbjct: 121 SLRDYLPRH--SIGLAQLLLFAQQICEGMAYLHAQHYIHRDLAARNVLL--DNDRLVK-- 174

Query: 385 VITDFGSS---YTNKSGLSMQYSSADIELGGN--VALMAPEVALATPGLFSFVNYSKSDA 439
            I DFG +             Y   +    G+  V   APE  L     F       SD 
Sbjct: 175 -IGDFGLAKAVPEGHE----YYRVRE---DGDSPVFWYAPE-CLKE-YKFY----YASDV 220

Query: 440 WTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRL--------------- 484
           W+ G   YE+  H +    S      E+  + Q    V  +   L               
Sbjct: 221 WSFGVTLYELLTHCDSSQ-SPPTKFLELIGIAQGQMTVLRLTELLERGERLPRPDKCPAE 279

Query: 485 VAKLL----ENDPSDRPS 498
           V  L+    E + S RP+
Sbjct: 280 VYHLMKNCWETEASFRPT 297

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 56.2 bits (136), Expect = 9e-09
 Identities = 68/318 (21%), Positives = 117/318 (36%), Gaps = 101/318 (31%)

Query: 204 IAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDML 261
           I +G+  +V  A  +  G + A+KMM           + K   +ELL        NE ++
Sbjct: 53  IGEGSTGIVCLAREKHSGRQVAVKMM----------DLRKQQRRELL-------FNEVVI 95

Query: 262 MNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKK 321
           M   +    H NVV M+                              Y     L++LM+ 
Sbjct: 96  MRDYQ----HFNVVEMY----------------------------KSYLVGEELWVLME- 122

Query: 322 Y-----NTDL--RNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLD 374
           +      TD+  +  L E                +L+ + +L+     HRD+KSD+ILL 
Sbjct: 123 FLQGGALTDIVSQVRLNEEQIATVCEA-------VLQALAYLHAQGVIHRDIKSDSILLT 175

Query: 375 CSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY 434
                    + ++DFG        +  + S     L G    MAPEV   +        Y
Sbjct: 176 LDGR-----VKLSDFGFCAQISKDVPKRKS-----LVGTPYWMAPEVISRSL-------Y 218

Query: 435 -SKSDAWTAGTVAYEI------FGHDNPF---YQSARNTDYEVNALPQL--NTNVPEVMR 482
            ++ D W+ G +  E+      +  D+P     +         +  P+L  +  V  V+R
Sbjct: 219 ATEVDIWSLGIMVIEMVDGEPPYFSDSPVQAMKRLRD------SPPPKLKNSHKVSPVLR 272

Query: 483 RLVAKLLENDPSDRPSAE 500
             + ++L  DP +R +A+
Sbjct: 273 DFLERMLVRDPQERATAQ 290

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 63/292 (21%), Positives = 101/292 (34%), Gaps = 110/292 (37%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFRGVEY---------ALKMMFNYSAASNSHAILK--AMS 244
           D + +GK + +G    V  A   G++          A+KM             LK  A  
Sbjct: 69  DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKM-------------LKSDATE 115

Query: 245 KELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLN 304
           K+L  L     ++E  +M   + +  H N++                           L 
Sbjct: 116 KDLSDL-----ISEMEMM---KMIGKHKNII--------------------------NL- 140

Query: 305 PTGGYG---RNMSLFI---LMKKYNTDLRNYLRER--------CAQLSMHERVLLFTQLL 350
                G   ++  L++          +LR YL+ R               E  L    L+
Sbjct: 141 ----LGACTQDGPLYVIVEYAS--KGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLV 194

Query: 351 -------EGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQY 403
                   G+ +L   +  HRDL + N+L+  +EDN      I DFG        L+   
Sbjct: 195 SCAYQVARGMEYLASKKCIHRDLAARNVLV--TEDNVMK---IADFG--------LARDI 241

Query: 404 SSADI-ELGGNVAL----MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIF 450
              D  +   N  L    MAPE AL    +++     +SD W+ G + +EIF
Sbjct: 242 HHIDYYKKTTNGRLPVKWMAPE-ALFD-RIYT----HQSDVWSFGVLLWEIF 287

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 Length = 355

 Score = 56.1 bits (136), Expect = 1e-08
 Identities = 39/157 (24%), Positives = 70/157 (44%), Gaps = 23/157 (14%)

Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
           +++  + HL+     +RD+K +NILLD S  +    +V+TDFG S   K  ++ +   A 
Sbjct: 167 EIVLALEHLHKLGIIYRDIKLENILLD-SNGH----VVLTDFGLS---KEFVADETERAY 218

Query: 408 IELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYE-IFGHDNPFYQSARNTDY 465
            +  G +  MAP++            + K+ D W+ G + YE + G  +PF         
Sbjct: 219 -DFCGTIEYMAPDIVRGGD-----SGHDKAVDWWSLGVLMYELLTGA-SPFTVDGEKNSQ 271

Query: 466 E------VNALPQLNTNVPEVMRRLVAKLLENDPSDR 496
                  + + P     +  + + L+ +LL  DP  R
Sbjct: 272 AEISRRILKSEPPYPQEMSALAKDLIQRLLMKDPKKR 308

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 47/165 (28%), Positives = 64/165 (38%), Gaps = 37/165 (22%)

Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLV-ITDFGSSYTNKSGLSMQYSSA 406
             L+G+ +L+ H   HRD+K+ NILL           V + DFGS+       S      
Sbjct: 162 GALQGLAYLHSHNMIHRDVKAGNILLSEPGL------VKLGDFGSASIMAPANSFV---- 211

Query: 407 DIELGGNVALMAPEVALATPGLFSFVNY-SKSDAWTAGTVAYEI------FGHDNPF--- 456
                G    MAPEV LA         Y  K D W+ G    E+        + N     
Sbjct: 212 -----GTPYWMAPEVILAMDE----GQYDGKVDVWSLGITCIELAERKPPLFNMNAMSAL 262

Query: 457 YQSARNTDYEVNALPQL-NTNVPEVMRRLVAKLLENDPSDRPSAE 500
           Y  A+      N  P L + +  E  R  V   L+  P DRP++E
Sbjct: 263 YHIAQ------NESPALQSGHWSEYFRNFVDSCLQKIPQDRPTSE 301

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 54.9 bits (133), Expect = 2e-08
 Identities = 53/279 (18%), Positives = 86/279 (30%), Gaps = 96/279 (34%)

Query: 267 NLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDL 326
               HPNVV +     D                      T    R + + ++ +  + DL
Sbjct: 69  EAFEHPNVVRLM----DVCA-------------------TSRTDREIKVTLVFEHVDQDL 105

Query: 327 RNYLRERCAQLSMHERVL--LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           R YL ++     +    +  L  Q L G+  L+ +   HRDLK +NIL+          +
Sbjct: 106 RTYL-DKAPPPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGG-----TV 159

Query: 385 VITDFG--------SSYTNKSGLSMQYSSADIELGGNVAL--MAPEVALATPGLFSFVNY 434
            + DFG         + T                   V L   APEV L +        Y
Sbjct: 160 KLADFGLARIYSYQMALTPVV----------------VTLWYRAPEVLLQST-------Y 196

Query: 435 SKS-DAWTAGTVAYEIFGHDNPFYQSARNTD----------------------------- 464
           +   D W+ G +  E+F    P +      D                             
Sbjct: 197 ATPVDMWSVGCIFAEMFRRK-PLFCGNSEADQLGKIFDLIGLPPEDDWPRDVSLPRGAFP 255

Query: 465 -YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA 502
                 +  +   + E   +L+ ++L  +P  R SA  A
Sbjct: 256 PRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRA 294

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 56/303 (18%), Positives = 92/303 (30%), Gaps = 121/303 (39%)

Query: 188 PDVDDVKV---DDIQIGKFIAKGTNAVVYEATFRGVEY----ALKMMFNYSAASNSHAIL 240
           PD     V   +DI+    I +G    V +A  +        A+K              +
Sbjct: 14  PDPTIYPVLDWNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKR-------------M 60

Query: 241 K--AMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSA 298
           K  A   +           E  ++     L  HPN++                       
Sbjct: 61  KEYASKDDHRDF-----AGELEVL---CKLGHHPNII----------------------- 89

Query: 299 LPARLNPTGGYG---RNMSLFI---LMKKYNTDLRNYLRER--------CAQLSMHERVL 344
               L      G       L++        + +L ++LR+          A  +     L
Sbjct: 90  ---NL-----LGACEHRGYLYLAIEYAP--HGNLLDFLRKSRVLETDPAFAIANSTASTL 139

Query: 345 LFTQLLE-------GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSS----- 392
              QLL        G+ +L+  +  HRDL + NIL+   E+       I DFG S     
Sbjct: 140 SSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILV--GENYVAK---IADFGLSRGQEV 194

Query: 393 YTNKSGLSMQYSSADIELGGNVAL-----MAPEVALATPGLFSFVNYSKSDAWTAGTVAY 447
           Y  K+                        MA E +L    +++    + SD W+ G + +
Sbjct: 195 YVKKTM----------------GRLPVRWMAIE-SLNY-SVYT----TNSDVWSYGVLLW 232

Query: 448 EIF 450
           EI 
Sbjct: 233 EIV 235

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* Length = 345

 Score = 54.9 bits (133), Expect = 3e-08
 Identities = 31/161 (19%), Positives = 60/161 (37%), Gaps = 29/161 (18%)

Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
           ++   + +L+     +RDLK DN+LLD         + +TD+G     K G  ++     
Sbjct: 118 EISLALNYLHERGIIYRDLKLDNVLLDSEG-----HIKLTDYGMC---KEG--LRPGDTT 167

Query: 408 IELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYE 466
               G    +APE+            Y  S D W  G + +E+    +PF     + + +
Sbjct: 168 STFCGTPNYIAPEILRGED-------YGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPD 220

Query: 467 -----------VNALPQLNTNVPEVMRRLVAKLLENDPSDR 496
                      +    ++  ++      ++   L  DP +R
Sbjct: 221 QNTEDYLFQVILEKQIRIPRSLSVKAASVLKSFLNKDPKER 261

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score = 54.5 bits (132), Expect = 3e-08
 Identities = 58/279 (20%), Positives = 94/279 (33%), Gaps = 96/279 (34%)

Query: 267 NLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDL 326
               HPNVV +     D                           R   L ++ +  + DL
Sbjct: 69  ETFEHPNVVRLF----DVCT-------------------VSRTDRETKLTLVFEHVDQDL 105

Query: 327 RNYLRERCAQLSMHERVL--LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
             YL ++  +  +    +  +  QLL G+  L+ HR  HRDLK  NIL+  S      Q+
Sbjct: 106 TTYL-DKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSG-----QI 159

Query: 385 VITDFG--------SSYTNKSGLSMQYSSADIELGGNVAL--MAPEVALATPGLFSFVNY 434
            + DFG         + T+                  V L   APEV L +        Y
Sbjct: 160 KLADFGLARIYSFQMALTSVV----------------VTLWYRAPEVLLQSS-------Y 196

Query: 435 SKS-DAWTAGTVAYEIFGHDNPFYQSARNTD----------------------------- 464
           +   D W+ G +  E+F    P ++ + + D                             
Sbjct: 197 ATPVDLWSVGCIFAEMFRRK-PLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFH 255

Query: 465 -YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA 502
                 + +  T++ E+ + L+ K L  +P+ R SA  A
Sbjct: 256 SKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSA 294

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 54.9 bits (132), Expect = 3e-08
 Identities = 69/306 (22%), Positives = 107/306 (34%), Gaps = 60/306 (19%)

Query: 183 QVETLPDVDD---VKVDDIQIGKFIAKGTNAVVYEATFRGVE-------YALKM------ 226
             E LP          D +++GK + +G    V EA   G++        A+KM      
Sbjct: 6   HCERLPYDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGAT 65

Query: 227 -------------MFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVEN-LPPHP 272
                        + +     N   +L A +K   PL   + + E     ++   L    
Sbjct: 66  HSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPL---MVIVEFCKFGNLSTYLRSKR 122

Query: 273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRE 332
           N  V +           D     P  L  RL+       + S   + +K  +D+      
Sbjct: 123 NEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEEAP 182

Query: 333 RC---AQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDF 389
                  L++   +    Q+ +G+  L   +  HRDL + NILL  SE N      I DF
Sbjct: 183 EDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILL--SEKNVVK---ICDF 237

Query: 390 GSSYTNKSGLS-MQYSSADIELGGNVAL----MAPEVALATPGLFSFVNYSKSDAWTAGT 444
           G        L+   Y   D    G+  L    MAPE       +F  V   +SD W+ G 
Sbjct: 238 G--------LARDIYKDPDYVRKGDARLPLKWMAPE------TIFDRVYTIQSDVWSFGV 283

Query: 445 VAYEIF 450
           + +EIF
Sbjct: 284 LLWEIF 289

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 53.7 bits (130), Expect = 4e-08
 Identities = 39/174 (22%), Positives = 68/174 (39%), Gaps = 36/174 (20%)

Query: 337 LSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNK 396
           +   +    F QL+ GV +L+     HRD+K +N+LLD   DN    L I+DFG +    
Sbjct: 102 MPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLD-ERDN----LKISDFGLATV-- 154

Query: 397 SGLSMQYSSADIELG---GNVALMAPEVALATPGLFSFVNY--SKSDAWTAGTVAY---- 447
                +Y++ +  L    G +  +APE+            +     D W+ G V      
Sbjct: 155 ----FRYNNRERLLNKMCGTLPYVAPEL-------LKRREFHAEPVDVWSCGIVLTAMLA 203

Query: 448 -----EIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDR 496
                +        Y   +     +N   ++++        L+ K+L  +PS R
Sbjct: 204 GELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAP----LALLHKILVENPSAR 253

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} Length = 396

 Score = 54.7 bits (132), Expect = 4e-08
 Identities = 31/161 (19%), Positives = 60/161 (37%), Gaps = 29/161 (18%)

Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
           ++   + +L+     +RDLK DN+LLD         + +TD+G     K G  ++     
Sbjct: 161 EISLALNYLHERGIIYRDLKLDNVLLDSEG-----HIKLTDYGMC---KEG--LRPGDTT 210

Query: 408 IELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDYE 466
               G    +APE+            Y  S D W  G + +E+    +PF     + + +
Sbjct: 211 STFCGTPNYIAPEILRGED-------YGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPD 263

Query: 467 -----------VNALPQLNTNVPEVMRRLVAKLLENDPSDR 496
                      +    ++  ++      ++   L  DP +R
Sbjct: 264 QNTEDYLFQVILEKQIRIPRSLSVKAASVLKSFLNKDPKER 304

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score = 54.1 bits (131), Expect = 4e-08
 Identities = 46/215 (21%), Positives = 75/215 (34%), Gaps = 57/215 (26%)

Query: 324 TDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQ 383
           TDL   +++    L+           L+G+ +L+ H   HRDLK +N+LLD  E+     
Sbjct: 96  TDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLD--ENG---V 150

Query: 384 LVITDFGSSYTNKSGLSMQYSSADIELGGNVALM---APEVALATPGLFSFVNYSKS-DA 439
           L + DF        GL+  + S +      V      APE+      LF    Y    D 
Sbjct: 151 LKLADF--------GLAKSFGSPNRAYTHQVVTRWYRAPEL------LFGARMYGVGVDM 196

Query: 440 WTAGTVAYE-------------------IF------------GHDN-PFYQSARNTDYEV 467
           W  G +  E                   IF               + P Y + ++  +  
Sbjct: 197 WAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKS--FPG 254

Query: 468 NALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA 502
             L  + +   + +  L+  L   +P  R +A  A
Sbjct: 255 IPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQA 289

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 54.0 bits (130), Expect = 5e-08
 Identities = 23/200 (11%), Positives = 49/200 (24%), Gaps = 55/200 (27%)

Query: 324 TDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQ 383
             L+          S    +     L       +    A        +            
Sbjct: 116 GSLQEVADTS---PSPVGAIRAMQSLAAAADAAHRAGVALSIDHPSRVR----------- 161

Query: 384 LVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAG 443
             ++  G                             +V LA P      N  + D    G
Sbjct: 162 --VSIDG-----------------------------DVVLAYPATMPDANP-QDDIRGIG 189

Query: 444 TVAYEI---------FGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPS 494
              Y +          G  +    + R+T  +      ++ ++P  +  + A+ ++ D  
Sbjct: 190 ASLYALLVNRWPLPEAGVRSGLAPAERDTAGQPIEPADIDRDIPFQISAVAARSVQGDGG 249

Query: 495 DRPSAELAATVCQLYLWAPK 514
            R ++ L   + Q    A +
Sbjct: 250 IRSASTLLNLMQQATAVADR 269

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 54.1 bits (131), Expect = 5e-08
 Identities = 47/243 (19%), Positives = 86/243 (35%), Gaps = 82/243 (33%)

Query: 314 SLFILMKKYNTDLRNYL-----RERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKS 368
            L ++ +  + DL+ Y+           L ++       QLL+G+   + ++  HRDLK 
Sbjct: 77  KLTLVFEFMDNDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHENKILHRDLKP 136

Query: 369 DNILLDCSEDNTCPQLVITDFG---------SSYTNKSGLSMQYSSADIELGGNVAL--M 417
            N+L++        QL + DFG         ++++++                 V L   
Sbjct: 137 QNLLINKRG-----QLKLGDFGLARAFGIPVNTFSSEV----------------VTLWYR 175

Query: 418 APEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGHDNPFYQSARNTDY----------- 465
           AP+V + +        YS S D W+ G +  E+     P +    + +            
Sbjct: 176 APDVLMGSR------TYSTSIDIWSCGCILAEMITG-KPLFPGTNDEEQLKLIFDIMGTP 228

Query: 466 ------EVNALPQLNTNVPEVMRR--------------------LVAKLLENDPSDRPSA 499
                  V  LP+ N N+ +   R                     +  LL+ +P  R SA
Sbjct: 229 NESLWPSVTKLPKYNPNIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSA 288

Query: 500 ELA 502
           + A
Sbjct: 289 KQA 291

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 54.3 bits (131), Expect = 5e-08
 Identities = 43/163 (26%), Positives = 67/163 (41%), Gaps = 28/163 (17%)

Query: 345 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYS 404
            F QLL GV++ +  +  HRDLK +N LLD    +  P+L I DFG S ++    S   S
Sbjct: 121 FFQQLLSGVSYCHSMQICHRDLKLENTLLD---GSPAPRLKICDFGYSKSSVLH-SQPKS 176

Query: 405 SADIELGGNVALMAPEVALATPGLFSFVNY--SKSDAWTAGTVAYEI------FGHDNP- 455
           +      G  A +APEV            Y    +D W+ G   Y +      F      
Sbjct: 177 TV-----GTPAYIAPEV-------LLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEP 224

Query: 456 -FYQSARNTDYEVN-ALPQLNTNVPEVMRRLVAKLLENDPSDR 496
             Y+        V  ++P  +  +      L++++   DP+ R
Sbjct: 225 RDYRKTIQRILSVKYSIPD-DIRISPECCHLISRIFVADPATR 266

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 53.8 bits (130), Expect = 5e-08
 Identities = 55/287 (19%), Positives = 93/287 (32%), Gaps = 105/287 (36%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFRGVEY-------ALKMMFNYSAASNSHAILKAMSKELL 248
            DI +   + +G    V+ A    +         A+K              LK  S+   
Sbjct: 41  RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKA-------------LKEASESA- 86

Query: 249 PLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGG 308
             R+     E  L+  ++    H ++V                          R      
Sbjct: 87  --RQDF-QREAELLTMLQ----HQHIV--------------------------RF----- 108

Query: 309 YG---RNMSLFI---LMKKYNTDLRNYLRER--------------CAQLSMHERVLLFTQ 348
           +G       L +    M+  + DL  +LR                   L + + + + +Q
Sbjct: 109 FGVCTEGRPLLMVFEYMR--HGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQ 166

Query: 349 LLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADI 408
           +  G+ +L      HRDL + N L+   +        I DFG        +S    S D 
Sbjct: 167 VAAGMVYLAGLHFVHRDLATRNCLV--GQGLVVK---IGDFG--------MSRDIYSTDY 213

Query: 409 -ELGGNVAL----MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIF 450
             +GG   L    M PE ++     F+    ++SD W+ G V +EIF
Sbjct: 214 YRVGGRTMLPIRWMPPE-SILY-RKFT----TESDVWSFGVVLWEIF 254

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 53.8 bits (130), Expect = 5e-08
 Identities = 57/290 (19%), Positives = 90/290 (31%), Gaps = 109/290 (37%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFRGVEY-------ALKMMFNYSAASNSHAILK--AMSKE 246
             ++  + + +     VY+    G          A+K              LK  A    
Sbjct: 9   SAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKT-------------LKDKAEGPL 55

Query: 247 LLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPT 306
                     +E ML   ++    HPNVV                           L   
Sbjct: 56  REEF-----RHEAMLRARLQ----HPNVV--------------------------CL--- 77

Query: 307 GGYG---RNMSLFI---LMKKYNTDLRNYLRER--------CAQLSMHERVLLFTQLL-- 350
              G   ++  L +        + DL  +L  R               +  L     +  
Sbjct: 78  --LGVVTKDQPLSMIFSYCS--HGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHL 133

Query: 351 -----EGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSS 405
                 G+ +L+ H   H+DL + N+L+   +        I+D G        L  +  +
Sbjct: 134 VAQIAAGMEYLSSHHVVHKDLATRNVLV--YDKLNVK---ISDLG--------LFREVYA 180

Query: 406 ADI-ELGGNVAL----MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIF 450
           AD  +L GN  L    MAPE A+   G FS      SD W+ G V +E+F
Sbjct: 181 ADYYKLLGNSLLPIRWMAPE-AIMY-GKFS----IDSDIWSYGVVLWEVF 224

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 53.8 bits (130), Expect = 6e-08
 Identities = 69/296 (23%), Positives = 103/296 (34%), Gaps = 113/296 (38%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFRGVEY-------ALKMMFNYSAASNSHAILK--AMSKE 246
           ++++ GK +  G    V  AT  G+         A+KM             LK  A S E
Sbjct: 45  ENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKM-------------LKEKADSSE 91

Query: 247 LLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPT 306
              L     ++E  +M     L  H N+V                           L   
Sbjct: 92  REAL-----MSELKMM---TQLGSHENIV--------------------------NL--- 114

Query: 307 GGYG---RNMSLFILMKKY--NTDLRNYLRERCAQLSMHE---------------RVLLF 346
              G    +  ++++ + Y    DL NYLR +  + S  E                VL F
Sbjct: 115 --LGACTLSGPIYLIFE-YCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTF 171

Query: 347 TQLL-------EGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGL 399
             LL       +G+  L      HRDL + N+L+  +         I DFG        L
Sbjct: 172 EDLLCFAYQVAKGMEFLEFKSCVHRDLAARNVLV--THGKVVK---ICDFG--------L 218

Query: 400 SMQYSSADI-ELGGNVAL----MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIF 450
           +    S     + GN  L    MAPE +L   G+++     KSD W+ G + +EIF
Sbjct: 219 ARDIMSDSNYVVRGNARLPVKWMAPE-SLFE-GIYT----IKSDVWSYGILLWEIF 268

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A* 3owj_A* 3owk_A* ... Length = 330

 Score = 53.4 bits (129), Expect = 7e-08
 Identities = 43/225 (19%), Positives = 74/225 (32%), Gaps = 69/225 (30%)

Query: 323 NTDLRNYLRERCAQLS-MHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTC 381
           NTD +   +     L+    R  ++ ++L+ + + +     HRD+K  N+++D       
Sbjct: 117 NTDFKQLYQ----TLTDYDIRFYMY-EILKALDYCHSMGIMHRDVKPHNVMIDHE---HR 168

Query: 382 PQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALM---APEVALATPGLFSFVNYSKS- 437
            +L + D+G        L+  Y     E    VA      PE+      L  +  Y  S 
Sbjct: 169 -KLRLIDWG--------LAEFYHPGQ-EYNVRVASRYFKGPEL------LVDYQMYDYSL 212

Query: 438 DAWTAGTVAYEIFGHDNPFYQSARNTD--------------------YEVNALPQLNTNV 477
           D W+ G +   +     PF+    N D                    Y +   P+ N  +
Sbjct: 213 DMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDIL 272

Query: 478 PEVMRR--------------------LVAKLLENDPSDRPSAELA 502
               R+                     + KLL  D   R +A  A
Sbjct: 273 GRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREA 317

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 53.5 bits (129), Expect = 7e-08
 Identities = 39/174 (22%), Positives = 68/174 (39%), Gaps = 36/174 (20%)

Query: 337 LSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNK 396
           +   +    F QL+ GV +L+     HRD+K +N+LLD   DN    L I+DFG +    
Sbjct: 102 MPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLD-ERDN----LKISDFGLATV-- 154

Query: 397 SGLSMQYSSADIELG---GNVALMAPEVALATPGLFSFVNY--SKSDAWTAGTVAY---- 447
                +Y++ +  L    G +  +APE+            +     D W+ G V      
Sbjct: 155 ----FRYNNRERLLNKMCGTLPYVAPEL-------LKRREFHAEPVDVWSCGIVLTAMLA 203

Query: 448 -----EIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDR 496
                +        Y   +     +N   ++++        L+ K+L  +PS R
Sbjct: 204 GELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAP----LALLHKILVENPSAR 253

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 53.9 bits (130), Expect = 7e-08
 Identities = 63/292 (21%), Positives = 105/292 (35%), Gaps = 110/292 (37%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFRGVEY---------ALKMMFNYSAASNSHAILK--AMS 244
           D + +GK + +G    V  A   G++          A+KM             LK  A  
Sbjct: 81  DKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKM-------------LKDDATE 127

Query: 245 KELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLN 304
           K+L  L     ++E  +M   + +  H N++                           L 
Sbjct: 128 KDLSDL-----VSEMEMM---KMIGKHKNII--------------------------NL- 152

Query: 305 PTGGYG---RNMSLFI---LMKKYNTDLRNYLRER--------CAQLSMHERVLLFTQLL 350
                G   ++  L++          +LR YLR R             + E  + F  L+
Sbjct: 153 ----LGACTQDGPLYVIVEYAS--KGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLV 206

Query: 351 -------EGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQY 403
                   G+ +L   +  HRDL + N+L+  +E+N      I DFG        L+   
Sbjct: 207 SCTYQLARGMEYLASQKCIHRDLAARNVLV--TENNVMK---IADFG--------LARDI 253

Query: 404 SSADI-ELGGNVAL----MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIF 450
           ++ D  +   N  L    MAPE AL    +++     +SD W+ G + +EIF
Sbjct: 254 NNIDYYKKTTNGRLPVKWMAPE-ALFD-RVYT----HQSDVWSFGVLMWEIF 299

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 53.6 bits (129), Expect = 9e-08
 Identities = 37/216 (17%), Positives = 74/216 (34%), Gaps = 72/216 (33%)

Query: 193 VKVDDIQ--IGKFIAKGTNAVVYEATFR----GVEYALKMMFNYSAASNS---HAILKAM 243
            +V+D+    G  + +GT   VY+A  +      +YALK +     + ++    A+L+ +
Sbjct: 16  ERVEDLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGISMSACREIALLREL 75

Query: 244 SKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARL 303
                                      HPNV+ +   F                      
Sbjct: 76  K--------------------------HPNVISLQKVFLS-------------------- 89

Query: 304 NPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFT---------QLLEGVT 354
                   +  +++L      DL + + +       +++ +            Q+L+G+ 
Sbjct: 90  ------HADRKVWLLFDYAEHDLWHII-KFHRASKANKKPVQLPRGMVKSLLYQILDGIH 142

Query: 355 HLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFG 390
           +L+ +   HRDLK  NIL+         ++ I D G
Sbjct: 143 YLHANWVLHRDLKPANILVMGEGPER-GRVKIADMG 177

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 53.0 bits (128), Expect = 9e-08
 Identities = 39/153 (25%), Positives = 59/153 (38%), Gaps = 41/153 (26%)

Query: 318 LMKKYNTDLRNYLRER--------CAQLSMHERVLLFTQLL-------EGVTHLNMHRTA 362
            MK  + DL  +LR            Q    +  L  +Q+L        G+ +L      
Sbjct: 98  YMK--HGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQHFV 155

Query: 363 HRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADI-ELGGNVAL----M 417
           HRDL + N L+    +       I DFG        +S    S D   +GG+  L    M
Sbjct: 156 HRDLATRNCLV--GANLLVK---IGDFG--------MSRDVYSTDYYRVGGHTMLPIRWM 202

Query: 418 APEVALATPGLFSFVNYSKSDAWTAGTVAYEIF 450
            PE  +     F+    ++SD W+ G + +EIF
Sbjct: 203 PPESIMY--RKFT----TESDVWSFGVILWEIF 229

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 42/186 (22%), Positives = 70/186 (37%), Gaps = 35/186 (18%)

Query: 325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQL 384
           ++ +YL     ++   E    F Q++  V + +  R  HRDLK++N+LLD ++ N    +
Sbjct: 100 EVFDYLVAH-GRMKEKEARSKFRQIVSAVQYCHQKRIVHRDLKAENLLLD-ADMN----I 153

Query: 385 VITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY--SKSDAWTA 442
            I DFG S     G  +          G     APE+       F    Y   + D W+ 
Sbjct: 154 KIADFGFSNEFTVGGKLDAFC------GAPPYAAPEL-------FQGKKYDGPEVDVWSL 200

Query: 443 GTVAYEIFGHDNPF--------YQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPS 494
           G + Y +     PF         +      Y +   P     +      L+ + L  +P 
Sbjct: 201 GVILYTLVSGSLPFDGQNLKELRERVLRGKYRI---P---FYMSTDCENLLKRFLVLNPI 254

Query: 495 DRPSAE 500
            R + E
Sbjct: 255 KRGTLE 260

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* Length = 353

 Score = 52.2 bits (126), Expect = 2e-07
 Identities = 49/226 (21%), Positives = 85/226 (37%), Gaps = 67/226 (29%)

Query: 324 TDLRNYLRERCAQLS-MHERVLLFTQLLEGVTHLNMHRTA---HRDLKSDNILL--DCSE 377
           TDL   +  +   LS  H +  ++ Q L  V    +H  +   HRDLK  N+L+  +C  
Sbjct: 98  TDLHRVISTQ--MLSDDHIQYFIY-QTLRAVKV--LH-GSNVIHRDLKPSNLLINSNC-- 149

Query: 378 DNTCPQLVITDFG--SSYTNKSGLSMQYSSADIELGGNVALM---APEVALATPGLFSFV 432
                 L + DFG        +  + + +     +   VA     APEV      + +  
Sbjct: 150 -----DLKVCDFGLARIIDESAADNSEPTGQQSGMVEFVATRWYRAPEV------MLTSA 198

Query: 433 NYSKS-DAWTAGTVAYEIFG---------------------------HDNPFYQSARNTD 464
            YS++ D W+ G +  E+F                            +D    +S R  +
Sbjct: 199 KYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQLLLIFGIIGTPHSDNDLRCIESPRARE 258

Query: 465 YEVNALP--------QLNTNVPEVMRRLVAKLLENDPSDRPSAELA 502
           Y + +LP        ++   V      L+ ++L  DP+ R +A+ A
Sbjct: 259 Y-IKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEA 303

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 Length = 367

 Score = 51.6 bits (124), Expect = 4e-07
 Identities = 51/229 (22%), Positives = 88/229 (38%), Gaps = 69/229 (30%)

Query: 315 LFILMKKYNTDLRNYLRERCAQLS-MHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
            +++M    TDL   ++    +L     + L++ Q+L+G+ +++     HRDLK  N+ +
Sbjct: 105 FYLVMPFMGTDLGKLMK--HEKLGEDRIQFLVY-QMLKGLRYIHAAGIIHRDLKPGNLAV 161

Query: 374 --DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALM---APEVALATPGL 428
             DC       +L I DF        GL+     AD E+ G V      APEV      +
Sbjct: 162 NEDC-------ELKILDF--------GLA---RQADSEMTGYVVTRWYRAPEV------I 197

Query: 429 FSFVNYSKS-DAWTAGTVAYEIFG--------------------------HDNPFYQSAR 461
            +++ Y+++ D W+ G +  E+                                  QS  
Sbjct: 198 LNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDE 257

Query: 462 NTDYEVNALP--------QLNTNVPEVMRRLVAKLLENDPSDRPSAELA 502
             +Y +  LP         + TN   +   L+ K+L  D   R +A  A
Sbjct: 258 AKNY-MKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEA 305

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 51.1 bits (123), Expect = 4e-07
 Identities = 42/174 (24%), Positives = 70/174 (40%), Gaps = 34/174 (19%)

Query: 337 LSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNK 396
           +   E   LF Q+L  V + + H   HRDLK +N+LLD   +       I DFG S    
Sbjct: 108 VEEMEARRLFQQILSAVDYCHRHMVVHRDLKPENVLLDAHMN-----AKIADFGLSNMMS 162

Query: 397 SGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY--SKSDAWTAGTVAYEI----- 449
            G  ++ S       G+    APEV        S   Y   + D W+ G + Y +     
Sbjct: 163 DGEFLRTSC------GSPNYAAPEV-------ISGRLYAGPEVDIWSCGVILYALLCGTL 209

Query: 450 -FGHDN--PFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
            F  ++    ++  R   +    +P+    +   +  L+  +L+ DP  R + +
Sbjct: 210 PFDDEHVPTLFKKIRGGVFY---IPE---YLNRSVATLLMHMLQVDPLKRATIK 257

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} Length = 353

 Score = 51.5 bits (124), Expect = 4e-07
 Identities = 51/229 (22%), Positives = 86/229 (37%), Gaps = 70/229 (30%)

Query: 315 LFILMKKYNTDLRNYLRERCAQLS-MHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
            +++M    TDL+  +     + S    + L++ Q+L+G+ +++     HRDLK  N+ +
Sbjct: 104 FYLVMPFMQTDLQKIMG---LKFSEEKIQYLVY-QMLKGLKYIHSAGVVHRDLKPGNLAV 159

Query: 374 --DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALM---APEVALATPGL 428
             DC       +L I DF        GL+     AD E+ G V      APEV      +
Sbjct: 160 NEDC-------ELKILDF--------GLA---RHADAEMTGYVVTRWYRAPEV------I 195

Query: 429 FSFVNYSKS-DAWTAGTVAYEIFG--------------------------HDNPFYQSAR 461
            S+++Y+++ D W+ G +  E+                                      
Sbjct: 196 LSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQKLNDKA 255

Query: 462 NTDYEVNALP--------QLNTNVPEVMRRLVAKLLENDPSDRPSAELA 502
              Y + +LP        QL          L+ K+LE D   R +A  A
Sbjct: 256 AKSY-IQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQA 303

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 51.1 bits (123), Expect = 5e-07
 Identities = 62/298 (20%), Positives = 101/298 (33%), Gaps = 117/298 (39%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFRGVEY-------ALKMMFNYSAASNSHAILK--AMSKE 246
            ++ +GK + +G    V +AT   ++        A+KM             LK  A   E
Sbjct: 23  KNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKM-------------LKENASPSE 69

Query: 247 LLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPT 306
           L  L     L+E  ++  V     HP+V+                          +L   
Sbjct: 70  LRDL-----LSEFNVLKQVN----HPHVI--------------------------KL--- 91

Query: 307 GGYG---RNMSLFI---LMKKYNTDLRNYLRER----------------CAQLSMHERVL 344
             YG   ++  L +     K     LR +LRE                  +     ER L
Sbjct: 92  --YGACSQDGPLLLIVEYAK--YGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERAL 147

Query: 345 LFTQLL-------EGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKS 397
               L+       +G+ +L   +  HRDL + NIL+  +E        I+DFG       
Sbjct: 148 TMGDLISFAWQISQGMQYLAEMKLVHRDLAARNILV--AEGRKMK---ISDFG------- 195

Query: 398 GLSMQYSSADI-ELGGNVAL----MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIF 450
            LS      D         +    MA E +L    +++    ++SD W+ G + +EI 
Sbjct: 196 -LSRDVYEEDSYVKRSQGRIPVKWMAIE-SLFD-HIYT----TQSDVWSFGVLLWEIV 246

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score = 50.7 bits (122), Expect = 6e-07
 Identities = 42/192 (21%), Positives = 82/192 (42%), Gaps = 35/192 (18%)

Query: 315 LFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLD 374
           + ++++    +L +Y+ E+  +++  E    F Q++  + + + H+  HRDLK +N+LLD
Sbjct: 84  IVMVIEYAGGELFDYIVEK-KRMTEDEGRRFFQQIICAIEYCHRHKIVHRDLKPENLLLD 142

Query: 375 CSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY 434
            + +     + I DFG S     G  ++ S       G+    APEV        +   Y
Sbjct: 143 DNLN-----VKIADFGLSNIMTDGNFLKTSC------GSPNYAAPEV-------INGKLY 184

Query: 435 --SKSDAWTAGTVAYEIFGHDNPF--------YQSARNTDYEVNALPQLNTNVPEVMRRL 484
              + D W+ G V Y +     PF        ++   +  Y    +P     +    + L
Sbjct: 185 AGPEVDVWSCGIVLYVMLVGRLPFDDEFIPNLFKKVNSCVYV---MPD---FLSPGAQSL 238

Query: 485 VAKLLENDPSDR 496
           + +++  DP  R
Sbjct: 239 IRRMIVADPMQR 250

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 50.7 bits (121), Expect = 7e-07
 Identities = 29/203 (14%), Positives = 58/203 (28%), Gaps = 59/203 (29%)

Query: 348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD 407
            +L+ + +++     HR +K+ +IL+  S D       ++   S+ +  S    Q    D
Sbjct: 136 GVLKALDYIHHMGYVHRSVKASHILI--SVDGKV---YLSGLRSNLSMISHGQRQRVVHD 190

Query: 408 IELG--GNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEI---------------- 449
                   +  ++PEV       +      KSD ++ G  A E+                
Sbjct: 191 FPKYSVKVLPWLSPEVLQQNLQGYDA----KSDIYSVGITACELANGHVPFKDMPATQML 246

Query: 450 ----------------------------FGHDNPFYQSARNTDYEVNALPQLNTNVPE-- 479
                                          ++    S   +    +     +       
Sbjct: 247 LEKLNGTVPCLLDTSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTF 306

Query: 480 --VMRRLVAKLLENDPSDRPSAE 500
                  V + L+ +P  RPSA 
Sbjct: 307 SPHFHHFVEQCLQRNPDARPSAS 329

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A Length = 373

 Score = 50.5 bits (121), Expect = 8e-07
 Identities = 28/149 (18%), Positives = 55/149 (36%), Gaps = 44/149 (29%)

Query: 313 MSLFILMKKYN------TDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTA---H 363
            +L  L+KKY         ++   +                QLL G+ ++  HR     H
Sbjct: 114 ENLLALIKKYEHRGIPLIYVKQISK----------------QLLLGLDYM--HRRCGIIH 155

Query: 364 RDLKSDNILLDCSEDNTCPQLV-ITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVA 422
            D+K +N+L++  +       + I D G++         ++ +  I+        +PEV 
Sbjct: 156 TDIKPENVLMEIVDSPENLIQIKIADLGNACWYD-----EHYTNSIQ---TREYRSPEVL 207

Query: 423 LATPGLFSFVNYSKS-DAWTAGTVAYEIF 450
           L  P       +    D W+   + +E+ 
Sbjct: 208 LGAP-------WGCGADIWSTACLIFELI 229

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 64/325 (19%), Positives = 105/325 (32%), Gaps = 120/325 (36%)

Query: 171 RHAVNNMFDKLVQVETLPDVDDVKV--DDIQIGKFIAKGTNAVVYEATFRGVEY------ 222
           R   N M+ ++  +   P +  ++   ++I+  + I +G    V++A   G+        
Sbjct: 21  RLHPNPMYQRMPLLLN-PKLLSLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTM 79

Query: 223 -ALKMMFNYSAASNSHAILK--AMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHF 279
            A+KM             LK  A +             E  LM   +    +PN+V    
Sbjct: 80  VAVKM-------------LKEEASADMQADF-----QREAALMAEFD----NPNIV---- 113

Query: 280 AFTDFVPSIPDSSLIYPSALPARLNPTGGYG---RNMSLFI---LMKKYNTDLRNYLRER 333
                                 +L      G       + +    M     DL  +LR  
Sbjct: 114 ----------------------KL-----LGVCAVGKPMCLLFEYMA--YGDLNEFLRSM 144

Query: 334 ----------------CAQLSMHERVLLFTQLLE-------GVTHLNMHRTAHRDLKSDN 370
                               S     L   + L        G+ +L+  +  HRDL + N
Sbjct: 145 SPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLATRN 204

Query: 371 ILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADI-ELGGNVAL----MAPEVALAT 425
            L+   E+       I DFG        LS    SAD  +  GN A+    M PE ++  
Sbjct: 205 CLV--GENMVVK---IADFG--------LSRNIYSADYYKADGNDAIPIRWMPPE-SIFY 250

Query: 426 PGLFSFVNYSKSDAWTAGTVAYEIF 450
              ++    ++SD W  G V +EIF
Sbjct: 251 -NRYT----TESDVWAYGVVLWEIF 270

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... Length = 371

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 51/237 (21%), Positives = 84/237 (35%), Gaps = 74/237 (31%)

Query: 315 LFILMKKYNTDLRNYLRERCAQLS-MHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
           ++I+M+  + +L   ++    +L       LL+ Q+L G+ HL+     HRDLK  NI++
Sbjct: 105 VYIVMELMDANLCQVIQ---MELDHERMSYLLY-QMLCGIKHLHSAGIIHRDLKPSNIVV 160

Query: 374 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALM---APEVALATPGLFS 430
                + C  L I DF        GL+    ++ + +   V      APEV L       
Sbjct: 161 ----KSDC-TLKILDF--------GLARTAGTSFM-MTPYVVTRYYRAPEVILGM----- 201

Query: 431 FVNYSKS-DAWTAGTVAYE------IFGHDNPFYQ---------------------SARN 462
              Y ++ D W+ G +  E      +F   +   Q                     + R 
Sbjct: 202 --GYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRT 259

Query: 463 -----------------TDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA 502
                             D    A  + N       R L++K+L  D S R S + A
Sbjct: 260 YVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEA 316

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A Length = 336

 Score = 49.5 bits (117), Expect = 2e-06
 Identities = 31/207 (14%), Positives = 71/207 (34%), Gaps = 21/207 (10%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFRGVEYALKMM---FNYSAASNSHAILKAMSKELLPLRK 252
           + +Q  + I +G    V++        A+K++          +     + +  E++  ++
Sbjct: 20  EKLQRCEKIGEGVFGEVFQTIADHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKE 79

Query: 253 PLRLNEDMLMNSVENLPPHPNVVVMHFAF--TDFVPSIPDSSLIYPSALPARLNPTGGYG 310
              L+ ++              + ++         P +   +  + ++     N    + 
Sbjct: 80  LSLLSGEVCNR-------TEGFIGLNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFF 132

Query: 311 RNMSLFILMKKYN--TDLRNYLRERCAQLSMHERVLLFTQLLEGVTHL-NMHRTAHRDLK 367
           ++  LFI+++      DL     +     S+     +  QL   +       R  HRDL 
Sbjct: 133 KDDQLFIVLEFEFGGIDLEQMRTKL---SSLATAKSILHQLTASLAVAEASLRFEHRDLH 189

Query: 368 SDNILLDCSEDNTCPQLVITDFGSSYT 394
             N+LL      +  +L  T  G S T
Sbjct: 190 WGNVLLK---KTSLKKLHYTLNGKSST 213

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 59/331 (17%), Positives = 102/331 (30%), Gaps = 99/331 (29%)

Query: 190 VDDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKEL 247
           V ++K DD +    +  G   VV++ + +  G+  A K++          AI   + +EL
Sbjct: 27  VGELKDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLI----HLEIKPAIRNQIIREL 82

Query: 248 LPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTG 307
                       +L          P +V  +                            G
Sbjct: 83  -----------QVLHECN-----SPYIVGFY----------------------------G 98

Query: 308 GYGRNMSLFILMKKYNTDLRNYLRERCAQLSMH----------ERVL--LFTQLLEGVTH 355
            +  +  + I M            E     S+           E++L  +   +++G+T+
Sbjct: 99  AFYSDGEISICM------------EHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTY 146

Query: 356 L-NMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSS--YTNKSGLSMQYSSADIELGG 412
           L   H+  HRD+K  NIL+     N+  ++ + DFG S    +    SM  S       G
Sbjct: 147 LREKHKIMHRDVKPSNILV-----NSRGEIKLCDFGVSGQLID----SMANSFV-----G 192

Query: 413 NVALMAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALP 471
             + M+PE    T        YS +SD W+ G    E+     P           +    
Sbjct: 193 TRSYMSPERLQGTH-------YSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQ 245

Query: 472 QLNTNVPEVMRRLVAKLLENDPSDRPSAELA 502
                     R        N         +A
Sbjct: 246 VEGDAAETPPRPRTPGRPLNKFGMDSRPPMA 276

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A 3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A* 2oji_A* ... Length = 364

 Score = 48.8 bits (117), Expect = 3e-06
 Identities = 52/225 (23%), Positives = 79/225 (35%), Gaps = 73/225 (32%)

Query: 324 TDLRNYLRERCAQLS-MHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL--DCSEDNT 380
           TDL   L+     LS  H    L+ Q+L G+ +++     HRDLK  N+LL   C     
Sbjct: 114 TDLYKLLK--TQHLSNDHICYFLY-QILRGLKYIHSANVLHRDLKPSNLLLNTTC----- 165

Query: 381 CPQLVITDFG-----SSYTNKSGLSMQYSSADIELGGNVALM---APEVALATPGLFSFV 432
              L I DFG         + +G   +Y          VA     APE+      + +  
Sbjct: 166 --DLKICDFGLARVADPDHDHTGFLTEY----------VATRWYRAPEI------MLNSK 207

Query: 433 NYSKS-DAWTAGTVAYEIFG--------------------------HDNPFYQSARNTDY 465
            Y+KS D W+ G +  E+                             D     + +  +Y
Sbjct: 208 GYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNY 267

Query: 466 EVNALP--------QLNTNVPEVMRRLVAKLLENDPSDRPSAELA 502
            + +LP        +L  N       L+ K+L  +P  R   E A
Sbjct: 268 -LLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQA 311

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... Length = 367

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 46/220 (20%), Positives = 83/220 (37%), Gaps = 69/220 (31%)

Query: 324 TDLRNYLRERCAQLS-MHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL--DCSEDNT 380
            DL N ++  C +L+  H + L++ Q+L G+ +++     HRDLK  N+ +  DC     
Sbjct: 118 ADLNNIVK--CQKLTDDHVQFLIY-QILRGLKYIHSADIIHRDLKPSNLAVNEDC----- 169

Query: 381 CPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALM---APEVALATPGLFSFVNYSKS 437
             +L I DF        GL+        E+ G VA     APE+      + ++++Y+++
Sbjct: 170 --ELKILDF--------GLA---RHTADEMTGYVATRWYRAPEI------MLNWMHYNQT 210

Query: 438 -DAWTAGTVAYEIFG--------------------------HDNPFYQSARNTDYEVNAL 470
            D W+ G +  E+                                   S    +Y + +L
Sbjct: 211 VDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNY-IQSL 269

Query: 471 P--------QLNTNVPEVMRRLVAKLLENDPSDRPSAELA 502
                     +      +   L+ K+L  D   R +A  A
Sbjct: 270 TQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQA 309

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} Length = 320

 Score = 48.4 bits (116), Expect = 3e-06
 Identities = 57/272 (20%), Positives = 93/272 (34%), Gaps = 75/272 (27%)

Query: 271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYL 330
           H N+V            + +   I   +     +  G      S++I+ +   TDL N L
Sbjct: 67  HDNIV-----------KVFE---ILGPSGSQLTDDVGSLTELNSVYIVQEYMETDLANVL 112

Query: 331 RERCAQLS-MHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDF 389
            +    L   H R+ ++ QLL G+ +++     HRDLK  N+ ++ +ED     L I DF
Sbjct: 113 EQG--PLLEEHARLFMY-QLLRGLKYIHSANVLHRDLKPANLFIN-TED--L-VLKIGDF 165

Query: 390 GSSYTNKSGLSMQYSSADIELGGNVALM---APEVALATPGLFSFVNYSKS-DAWTAGTV 445
           G +      +   YS     L   +      +P +      L S  NY+K+ D W AG +
Sbjct: 166 GLA----RIMDPHYSHKGH-LSEGLVTKWYRSPRL------LLSPNNYTKAIDMWAAGCI 214

Query: 446 AYEIFG--------------------------HDNPFYQS-ARNTDYEVNALP------- 471
             E+                             D     S        +           
Sbjct: 215 FAEMLTGKTLFAGAHELEQMQLILESIPVVHEEDRQELLSVIPVY---IRNDMTEPHKPL 271

Query: 472 -QLNTNVPEVMRRLVAKLLENDPSDRPSAELA 502
            QL   +       + ++L   P DR +AE A
Sbjct: 272 TQLLPGISREAVDFLEQILTFSPMDRLTAEEA 303

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 48.6 bits (116), Expect = 4e-06
 Identities = 45/170 (26%), Positives = 69/170 (40%), Gaps = 34/170 (20%)

Query: 337 LSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNK 396
           L   E   LF Q+L GV + + H   HRDLK +N+LLD   +       I DFG S    
Sbjct: 113 LDEKESRRLFQQILSGVDYCHRHMVVHRDLKPENVLLDAHMN-----AKIADFGLSNMMS 167

Query: 397 SGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY--SKSDAWTAGTVAYEI----- 449
            G  ++ S       G+    APEV        S   Y   + D W++G + Y +     
Sbjct: 168 DGEFLRTSC------GSPNYAAPEV-------ISGRLYAGPEVDIWSSGVILYALLCGTL 214

Query: 450 -FGHDN--PFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDR 496
            F  D+    ++   +  +     PQ    +   +  L+  +L+ DP  R
Sbjct: 215 PFDDDHVPTLFKKICDGIFY---TPQ---YLNPSVISLLKHMLQVDPMKR 258

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A* Length = 355

 Score = 48.5 bits (116), Expect = 4e-06
 Identities = 42/263 (15%), Positives = 78/263 (29%), Gaps = 110/263 (41%)

Query: 313 MSLFILMKKYN------TDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDL 366
            + F  +K+ N        +R+                   QL   +  L+ ++  H DL
Sbjct: 106 KNTFEFLKENNFQPYPLPHVRHMAY----------------QLCHALRFLHENQLTHTDL 149

Query: 367 KSDNILLDCSEDNTCPQL---------------VITDFGSS-YTNKSG----LSMQYSSA 406
           K +NIL   SE  T                   V  DFGS+ + ++       +  Y   
Sbjct: 150 KPENILFVNSEFETLYNEHKSCEEKSVKNTSIRVA-DFGSATFDHEHHTTIVATRHYR-- 206

Query: 407 DIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIF-------GHDN---- 454
                       PEV L          +++  D W+ G + +E +        H+N    
Sbjct: 207 -----------PPEVILELG-------WAQPCDVWSIGCILFEYYRGFTLFQTHENREHL 248

Query: 455 -----------------------------PFYQSARNTDYEVNALPQLNTNVP------E 479
                                         + +++ +  Y       L + +        
Sbjct: 249 VMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHV 308

Query: 480 VMRRLVAKLLENDPSDRPSAELA 502
            +  L+ ++LE DP+ R +   A
Sbjct: 309 QLFDLMRRMLEFDPAQRITLAEA 331

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* Length = 429

 Score = 48.2 bits (115), Expect = 4e-06
 Identities = 35/155 (22%), Positives = 59/155 (38%), Gaps = 39/155 (25%)

Query: 315 LFILMKKYNTDLRNYLRE-RCAQLSMHERVLLFT-QLLEGVTHLNMHRTAHRDLKSDNIL 372
           + +  +  + +L   +++ +    S+   V  F   +L+ +  L+ +R  H DLK +NIL
Sbjct: 174 ICMTFELLSMNLYELIKKNKFQGFSLP-LVRKFAHSILQCLDALHKNRIIHCDLKPENIL 232

Query: 373 LDCSEDNTCPQLVITDFGSS-YTNKSGL----SMQYSSADIELGGNVALMAPEVALATPG 427
           L   +      + + DFGSS Y ++       S  Y              APEV L    
Sbjct: 233 L---KQQGRSGIKVIDFGSSCYEHQRVYTYIQSRFYR-------------APEVILGAR- 275

Query: 428 LFSFVNYSKS-DAWTAGTVAYEIF-------GHDN 454
                 Y    D W+ G +  E+        G D 
Sbjct: 276 ------YGMPIDMWSLGCILAELLTGYPLLPGEDE 304

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A* Length = 339

 Score = 48.0 bits (115), Expect = 4e-06
 Identities = 46/263 (17%), Positives = 78/263 (29%), Gaps = 110/263 (41%)

Query: 313 MSLFILMKKYN------TDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDL 366
           +S +  +K+          +R                    Q+ + V  L+ ++  H DL
Sbjct: 101 LSTYDFIKENGFLPFRLDHIRKMAY----------------QICKSVNFLHSNKLTHTDL 144

Query: 367 KSDNILLDCSEDNTCPQL---------------VITDFGSS-YTNKSG----LSMQYSSA 406
           K +NIL   S+                      V+ DFGS+ Y ++       +  Y   
Sbjct: 145 KPENILFVQSDYTEAYNPKIKRDERTLINPDIKVV-DFGSATYDDEHHSTLVSTRHYR-- 201

Query: 407 DIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIF-------GHDN---- 454
                      APEV LA         +S+  D W+ G +  E +        HD+    
Sbjct: 202 -----------APEVILALG-------WSQPCDVWSIGCILIEYYLGFTVFPTHDSKEHL 243

Query: 455 -----------------------------PFYQSARNTDYEVNALPQLNTNVP------E 479
                                         + + +    Y   A   L   +       E
Sbjct: 244 AMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHE 303

Query: 480 VMRRLVAKLLENDPSDRPSAELA 502
            +  L+ K+LE DP+ R +   A
Sbjct: 304 RLFDLIQKMLEYDPAKRITLREA 326

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} Length = 458

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 50/272 (18%), Positives = 87/272 (31%), Gaps = 83/272 (30%)

Query: 199 QIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRL 256
           +I   I  G+   V EA  +      A+K +                   +   R  LR 
Sbjct: 56  EIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILR------------VFEDLIDCKRI-LR- 101

Query: 257 NEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLF 316
            E  ++N +     H +VV            + D   I       + +          L+
Sbjct: 102 -EIAILNRLN----HDHVV-----------KVLD---IVIPKDVEKFD---------ELY 133

Query: 317 ILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL--D 374
           ++++  ++D +   R       +H + LL+  LL GV +++     HRDLK  N L+  D
Sbjct: 134 VVLEIADSDFKKLFRTPVYLTELHIKTLLY-NLLVGVKYVHSAGILHRDLKPANCLVNQD 192

Query: 375 CSEDNTCPQLVITDFG------------SSYTNKSGLSMQYSSADIELGGNVALM----- 417
           CS       + + DFG            S                         +     
Sbjct: 193 CS-------VKVCDFGLARTVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVV 245

Query: 418 -----APEVALATPGLFSFVNYSKS-DAWTAG 443
                APE+      +    NY+++ D W+ G
Sbjct: 246 TRWYRAPEL------ILLQENYTEAIDVWSIG 271

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A* Length = 382

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 33/163 (20%), Positives = 52/163 (31%), Gaps = 60/163 (36%)

Query: 313 MSLFILMKKYN------TDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTA--HR 364
            +L+ L++  N         R + +                Q+   +  L     +  H 
Sbjct: 140 YNLYDLLRNTNFRGVSLNLTRKFAQ----------------QMCTALLFLATPELSIIHC 183

Query: 365 DLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGL-----SMQYSSADIELGGNVALMAP 419
           DLK +NILL    +     + I DFGSS      +     S  Y              +P
Sbjct: 184 DLKPENILL---CNPKRSAIKIVDFGSSCQLGQRIYQYIQSRFYR-------------SP 227

Query: 420 EVALATPGLFSFVNYSKS-DAWTAGTVAYEIF-------GHDN 454
           EV L  P       Y  + D W+ G +  E+        G + 
Sbjct: 228 EVLLGMP-------YDLAIDMWSLGCILVEMHTGEPLFSGANE 263

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} Length = 388

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 30/143 (20%), Positives = 58/143 (40%), Gaps = 42/143 (29%)

Query: 324 TDLRNYLRERCAQLS-MHERVLLFTQLLEGVTHLNMHRTA---HRDLKSDNILL--DCSE 377
           TDL   +R     L  +H++ +++ QL++ + +  +H +    HRD+K  NILL  +C  
Sbjct: 95  TDLHAVIRAN--ILEPVHKQYVVY-QLIKVIKY--LH-SGGLLHRDMKPSNILLNAEC-- 146

Query: 378 DNTCPQLVITDFG------SSYTNKSGLSMQYSSADIELGGNVALM----------APEV 421
                 + + DFG      +     + + +  +        +  ++          APE+
Sbjct: 147 -----HVKVADFGLSRSFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEI 201

Query: 422 ALATPGLFSFVNYSKS-DAWTAG 443
                 L     Y+K  D W+ G
Sbjct: 202 ------LLGSTKYTKGIDMWSLG 218

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* Length = 432

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 33/143 (23%), Positives = 49/143 (34%), Gaps = 40/143 (27%)

Query: 324 TDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTA---HRDLKSDNILL--DCSED 378
           +DL+   +        H + +L+  LL G     +H  +   HRDLK  N LL  DC   
Sbjct: 114 SDLKKLFKTPIFLTEEHIKTILY-NLLLGENF--IH-ESGIIHRDLKPANCLLNQDC--- 166

Query: 379 NTCPQLVITDFG-------SSYTNKSGLSMQYSSADIELGGNVALM----------APEV 421
                + + DFG          TN      +              +          APE+
Sbjct: 167 ----SVKVCDFGLARTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPEL 222

Query: 422 ALATPGLFSFVNYSKS-DAWTAG 443
                 +    NY+KS D W+ G
Sbjct: 223 ------ILLQENYTKSIDIWSTG 239

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7} Length = 360

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 34/183 (18%), Positives = 56/183 (30%), Gaps = 79/183 (43%)

Query: 313 MSLFILMKKYN------TDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDL 366
            SL+ ++ + N       D++ Y                  ++L+ + +L      H DL
Sbjct: 120 PSLYEIITRNNYNGFHIEDIKLYCI----------------EILKALNYLRKMSLTHTDL 163

Query: 367 KSDNILLDCSEDNTCPQLVIT--------------------DFGSS-------YTNKSGL 399
           K +NILLD          V                      DFG +        +  +  
Sbjct: 164 KPENILLDDPYFEKSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDYHGSIIN-- 221

Query: 400 SMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS-DAWTAGTVAYEIF-------G 451
           + QY              APEV L          +  S D W+ G V  E++        
Sbjct: 222 TRQYR-------------APEVILNLG-------WDVSSDMWSFGCVLAELYTGSLLFRT 261

Query: 452 HDN 454
           H++
Sbjct: 262 HEH 264

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* Length = 464

 Score = 44.5 bits (105), Expect = 8e-05
 Identities = 53/249 (21%), Positives = 87/249 (34%), Gaps = 78/249 (31%)

Query: 305 PTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLS-MHERVLLFTQLLEGVTHLNMHRTAH 363
           P         ++++M+  + +L   ++    +L       LL+ Q+L G+ HL+     H
Sbjct: 132 PQKTLEEFQDVYLVMELMDANLCQVIQ---MELDHERMSYLLY-QMLCGIKHLHSAGIIH 187

Query: 364 RDLKSDNILL--DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALM---A 418
           RDLK  NI++  DC        L I DF        GL+    ++ + +   V      A
Sbjct: 188 RDLKPSNIVVKSDC-------TLKILDF--------GLARTAGTSFM-MTPYVVTRYYRA 231

Query: 419 PEVALATPGLFSFVNYSKS-DAWTAGTVAYEIFGH------DNPFYQ------------- 458
           PEV L          Y ++ D W+ G +  E+  H       +   Q             
Sbjct: 232 PEVILGM-------GYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCP 284

Query: 459 --------SARN-----------------TDYEVNALPQLNTNVPEVMRRLVAKLLENDP 493
                   + RN                  D    A  + N       R L++K+L  DP
Sbjct: 285 EFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDP 344

Query: 494 SDRPSAELA 502
           + R S + A
Sbjct: 345 AKRISVDDA 353

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens} Length = 345

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 17/78 (21%), Positives = 39/78 (50%), Gaps = 4/78 (5%)

Query: 316 FILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDC 375
           F++M++   DL   +  +         + L  ++L+ + +++ +   H D+K+ N+LL  
Sbjct: 128 FMVMERLGIDL-QKISGQNGTFKKSTVLQLGIRMLDVLEYIHENEYVHGDIKAANLLLGY 186

Query: 376 SEDNTCPQLVITDFGSSY 393
              +   Q+ + D+G SY
Sbjct: 187 KNPD---QVYLADYGLSY 201

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	588
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	100.0
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	100.0
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	100.0
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	100.0
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	100.0
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	100.0
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	100.0
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	100.0
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	100.0
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	100.0
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	100.0
3niz_A	311	Rhodanese family protein; structural genomics, str	100.0
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	100.0
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	100.0
3o0g_A	292	Cell division protein kinase 5; kinase activator c	100.0
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	100.0
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	100.0
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	100.0
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	100.0
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	100.0
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	100.0
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	100.0
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	100.0
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	100.0
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	100.0
3rp9_A	458	Mitogen-activated protein kinase; structural genom	100.0
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	100.0
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	100.0
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	100.0
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	100.0
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	100.0
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	100.0
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	100.0
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	100.0
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	100.0
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	100.0
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	100.0
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	100.0
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	100.0
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	100.0
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	100.0
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	100.0
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	100.0
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	100.0
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	100.0
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	100.0
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	100.0
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	100.0
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	100.0
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	100.0
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	100.0
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	100.0
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	100.0
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	100.0
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	100.0
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	100.0
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	100.0
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	100.0
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	100.0
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	100.0
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	100.0
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	100.0
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	100.0
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	100.0
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	100.0
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	100.0
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	100.0
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	100.0
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	100.0
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	100.0
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	100.0
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	100.0
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	100.0
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	100.0
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	100.0
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	100.0
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	100.0
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	100.0
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	100.0
3fme_A	290	Dual specificity mitogen-activated protein kinase;	100.0
3soc_A	322	Activin receptor type-2A; structural genomics cons	100.0
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	100.0
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	100.0
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	100.0
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	100.0
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	100.0
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	100.0
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	100.0
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	100.0
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	100.0
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	100.0
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	100.0
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	100.0
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	100.0
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	100.0
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	100.0
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	100.0
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	100.0
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	100.0
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	100.0
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	100.0
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	100.0
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	100.0
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	100.0
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	100.0
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	100.0
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	100.0
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	100.0
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	100.0
3ork_A	311	Serine/threonine protein kinase; structural genomi	100.0
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	100.0
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	100.0
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	100.0
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	100.0
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	100.0
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	100.0
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	100.0
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	100.0
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	100.0
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	100.0
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	100.0
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	100.0
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	100.0
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	100.0
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	100.0
3q4u_A	301	Activin receptor type-1; structural genomics conso	100.0
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	100.0
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	100.0
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	100.0
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	100.0
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	100.0
3an0_A	340	Dual specificity mitogen-activated protein kinase;	100.0
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	100.0
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	100.0
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	100.0
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	100.0
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	100.0
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	100.0
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	100.0
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	100.0
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	100.0
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	100.0
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	100.0
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	100.0
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	100.0
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	100.0
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	100.0
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	100.0
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	100.0
3bhy_A	283	Death-associated protein kinase 3; death associate	100.0
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	100.0
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	100.0
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	100.0
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	100.0
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	100.0
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	100.0
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	100.0
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	100.0
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	100.0
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	100.0
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	100.0
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	100.0
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	100.0
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	100.0
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	100.0
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	100.0
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	100.0
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	100.0
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	100.0
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	100.0
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	100.0
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	100.0
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	100.0
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	100.0
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	100.0
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	100.0
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	100.0
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	100.0
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	100.0
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	100.0
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	100.0
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	100.0
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	100.0
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	100.0
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	100.0
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	100.0
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	100.0
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	100.0
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	100.0
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	100.0
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	100.0
2dyl_A	318	Dual specificity mitogen-activated protein kinase	100.0
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	100.0
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	100.0
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	100.0
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	100.0
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	100.0
2a19_B	284	Interferon-induced, double-stranded RNA-activated	100.0
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	100.0
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	100.0
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	100.0
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	100.0
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	100.0
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	100.0
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	100.0
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	100.0
3aln_A	327	Dual specificity mitogen-activated protein kinase;	100.0
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	100.0
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	100.0
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	100.0
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	100.0
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	100.0
3pls_A	298	Macrophage-stimulating protein receptor; protein k	100.0
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	100.0
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	100.0
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	100.0
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	100.0
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	100.0
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	100.0
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	100.0
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	100.0
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	100.0
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	100.0
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	100.0
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	100.0
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	100.0
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	100.0
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	100.0
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	100.0
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	100.0
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	100.0
3uqc_A	286	Probable conserved transmembrane protein; structur	100.0
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.97
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.92
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.86
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.77
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.64
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	99.19
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	98.86
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	98.85
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	98.7
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	98.18
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	98.01
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	97.86
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	97.74
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	97.7
3ats_A	357	Putative uncharacterized protein; hypothetical pro	97.61
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	97.61
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	97.54
2yle_A	229	Protein spire homolog 1; actin-binding protein, ac	97.49
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	97.28
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	96.9
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	96.86
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	96.8
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	96.7
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	96.68
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	96.62
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	96.46
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	96.45
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	96.43
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	96.43
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	96.4
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	96.39
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	96.07
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	95.92
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	95.71
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	95.55
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	95.36
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	95.23
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	95.08
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	94.8
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	94.64
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	94.54
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	93.53
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	92.8
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	92.51
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	92.44
3mes_A	424	Choline kinase; malaria, structural genomics, stru	91.92
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	91.44
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	90.29
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	88.81
2ltn_B	52	PEA lectin, beta chain; 1.70A {Pisum sativum} SCOP	88.65
3f2s_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	88.51
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	86.27
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	83.46
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	80.96

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=2.9e-57  Score=460.19  Aligned_cols=257  Identities=23%  Similarity=0.302  Sum_probs=201.5

Q ss_pred             ccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCC
Q psy4039         194 KVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPH  271 (588)
Q Consensus       194 ~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~H  271 (588)
                      .+++|++.+.||+|+||+||+|.+.  |+.||||++.+......              .....+.+|+.+|+.+    +|
T Consensus        11 ~ig~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~--------------~~~~~~~~Ei~il~~l----~H   72 (275)
T 3hyh_A           11 HIGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKS--------------DMQGRIEREISYLRLL----RH   72 (275)
T ss_dssp             ---CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC--------------------CHHHHHHHHHHHHHC----CC
T ss_pred             EeeCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCH--------------HHHHHHHHHHHHHHHC----CC
Confidence            3589999999999999999999987  89999999965322111              1234577899999998    89


Q ss_pred             CceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4039         272 PNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLE  351 (588)
Q Consensus       272 pNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~  351 (588)
                      ||||++++++.+..                            .+|+||||++|+|.+++..++ .+++.++..++.||+.
T Consensus        73 pnIv~~~~~~~~~~----------------------------~~~ivmEy~~g~L~~~l~~~~-~l~e~~~~~~~~qi~~  123 (275)
T 3hyh_A           73 PHIIKLYDVIKSKD----------------------------EIIMVIEYAGNELFDYIVQRD-KMSEQEARRFFQQIIS  123 (275)
T ss_dssp             TTBCCEEEEEECSS----------------------------EEEEEEECCCEEHHHHHHHSC-SCCHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEEEECC----------------------------EEEEEEeCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            99999999998732                            599999999999999998765 8999999999999999


Q ss_pred             HHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccC
Q psy4039         352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF  431 (588)
Q Consensus       352 gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~  431 (588)
                      ||+|||++||+||||||+|||++.+     +.+||+|||+|+.......      ..+.+||+.|||||++.+..+    
T Consensus       124 al~ylH~~~IiHRDiKP~NILl~~~-----~~vkl~DFGla~~~~~~~~------~~~~~GT~~Y~APE~~~~~~y----  188 (275)
T 3hyh_A          124 AVEYCHRHKIVHRDLKPENLLLDEH-----LNVKIADFGLSNIMTDGNF------LKTSCGSPNYAAPEVISGKLY----  188 (275)
T ss_dssp             HHHHHHHTTCCCCCCCTTTEEECTT-----CCEEECCSSCC---------------------CTTSCHHHHSSSSC----
T ss_pred             HHHHHHHCCcccccCChHHeEECCC-----CCEEEeecCCCeecCCCCc------cCCeeECcccCChhhhcCCCC----
Confidence            9999999999999999999999987     8999999999987544221      125789999999999987652    


Q ss_pred             CCCCcCchhhHHHHHHHHhcCCCCCcccccccccc--ccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhh
Q psy4039         432 VNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLY  509 (588)
Q Consensus       432 ~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~--~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~  509 (588)
                       ++.++||||+||++|||++|+.||.+......+.  ....+.++..+|+++++||.+||+.||++|||++|+++     
T Consensus       189 -~~~~~DiwSlGvily~lltg~~PF~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~~dP~~R~s~~eil~-----  262 (275)
T 3hyh_A          189 -AGPEVDVWSCGVILYVMLCRRLPFDDESIPVLFKNISNGVYTLPKFLSPGAAGLIKRMLIVNPLNRISIHEIMQ-----  262 (275)
T ss_dssp             -CCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH-----
T ss_pred             -CCChhhhHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHccCChhHCcCHHHHHc-----
Confidence             2468999999999999999999998753322211  12334567889999999999999999999999999999     


Q ss_pred             hhcCCccccCCCC
Q psy4039         510 LWAPKHWLYGATP  522 (588)
Q Consensus       510 ~~~~h~w~~~~~~  522 (588)
                          |||++...|
T Consensus       263 ----hpw~k~~~p  271 (275)
T 3hyh_A          263 ----DDWFKVDLP  271 (275)
T ss_dssp             ----CHHHHTTCC
T ss_pred             ----CcccccCCC
Confidence                999986655

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=5.3e-57  Score=464.99  Aligned_cols=263  Identities=23%  Similarity=0.336  Sum_probs=214.5

Q ss_pred             cccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCC
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPP  270 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~  270 (588)
                      ...++|++++.||+|+||+||+|+++  ++.||||++.+..           +..+   ...+.+.+|+.+|+.+    +
T Consensus        29 ~~~~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~-----------~~~~---~~~~~~~~E~~il~~l----~   90 (311)
T 4aw0_A           29 KRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRH-----------IIKE---NKVPYVTRERDVMSRL----D   90 (311)
T ss_dssp             CCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHH-----------HHHT---TCHHHHHHHHHHHTTC----C
T ss_pred             CCccccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHH-----------CCCH---HHHHHHHHHHHHHHhC----C
Confidence            34578999999999999999999997  8899999995311           1111   1335577899999987    9


Q ss_pred             CCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4039         271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQL  349 (588)
Q Consensus       271 HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql  349 (588)
                      |||||+++++|++..                            .+|+||||| +|+|.++|...+ .+++.++..++.||
T Consensus        91 HpnIv~l~~~~~~~~----------------------------~~yivmEy~~gG~L~~~i~~~~-~l~e~~~~~~~~qi  141 (311)
T 4aw0_A           91 HPFFVKLYFTFQDDE----------------------------KLYFGLSYAKNGELLKYIRKIG-SFDETCTRFYTAEI  141 (311)
T ss_dssp             CTTBCCEEEEEECSS----------------------------EEEEEECCCTTEEHHHHHHHHS-SCCHHHHHHHHHHH
T ss_pred             CCCCCeEEEEEEeCC----------------------------EEEEEEecCCCCCHHHHHHHcC-CCCHHHHHHHHHHH
Confidence            999999999998742                            599999999 679999998765 89999999999999


Q ss_pred             HHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCc
Q psy4039         350 LEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF  429 (588)
Q Consensus       350 ~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~  429 (588)
                      +.||+|||++||+||||||+|||++.+     +.+||+|||+|+........   ....+.+||+.|||||++.+..   
T Consensus       142 ~~al~ylH~~~IiHRDlKPeNILl~~~-----g~vKl~DFGla~~~~~~~~~---~~~~~~~GTp~YmAPEvl~~~~---  210 (311)
T 4aw0_A          142 VSALEYLHGKGIIHRDLKPENILLNED-----MHIQITDFGTAKVLSPESKQ---ARANSFVGTAQYVSPELLTEKS---  210 (311)
T ss_dssp             HHHHHHHHHTTEECSCCSGGGEEECTT-----SCEEECCCTTCEECCTTTTC---CCBCCCCSCGGGCCHHHHHHSC---
T ss_pred             HHHHHHHHHCCCccCCCCHHHeEEcCC-----CCEEEEEcCCceecCCCCCc---ccccCcccCcccCCHHHHcCCC---
Confidence            999999999999999999999999988     89999999999986543221   1123678999999999998876   


Q ss_pred             cCCCCCcCchhhHHHHHHHHhcCCCCCcccccccccc--ccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHh
Q psy4039         430 SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       430 ~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~--~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~  507 (588)
                         ++.++||||+||++|||++|++||.+......+.  ......++..+++++++||.+||+.||++|||++|++....
T Consensus       211 ---y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~p~~~s~~~~dli~~lL~~dp~~R~t~~e~~~~~~  287 (311)
T 4aw0_A          211 ---ACKSSDLWALGCIIYQLVAGLPPFRAGNEGLIFAKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGP  287 (311)
T ss_dssp             ---BCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHSCSSGGGSTTSGGGTCHHH
T ss_pred             ---CCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCcccCHHHHHHHHHHccCCHhHCcChHHHcCCHH
Confidence               4578999999999999999999998753322221  12234567889999999999999999999999998643211


Q ss_pred             hhhhcCCccccC
Q psy4039         508 LYLWAPKHWLYG  519 (588)
Q Consensus       508 ~~~~~~h~w~~~  519 (588)
                      .   ..||||+.
T Consensus       288 i---~~Hp~F~~  296 (311)
T 4aw0_A          288 L---KAHPFFES  296 (311)
T ss_dssp             H---HTSGGGTT
T ss_pred             H---HCCCCcCC
Confidence            1   12999974

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=2.6e-56  Score=466.37  Aligned_cols=251  Identities=24%  Similarity=0.328  Sum_probs=211.0

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      +.|++.+.||+|+||+||+|+++  |+.||||++.....                 ...+.+.+|+.+|+.+    +|||
T Consensus        74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~-----------------~~~~~~~~Ei~il~~l----~Hpn  132 (346)
T 4fih_A           74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQ-----------------QRRELLFNEVVIMRDY----QHEN  132 (346)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGC-----------------SSGGGGHHHHHHHHHC----CCTT
T ss_pred             HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCch-----------------hHHHHHHHHHHHHHhC----CCCC
Confidence            67999999999999999999997  89999999953211                 1334577899999998    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      ||+++++|.+..                            .+|+||||| +|+|.+++...  .+++.++..|+.||+.|
T Consensus       133 IV~l~~~~~~~~----------------------------~~~ivmEy~~gg~L~~~l~~~--~l~e~~~~~~~~qi~~a  182 (346)
T 4fih_A          133 VVEMYNSYLVGD----------------------------ELWVVMEFLEGGALTDIVTHT--RMNEEQIAAVCLAVLQA  182 (346)
T ss_dssp             BCCEEEEEEETT----------------------------EEEEEECCCTTEEHHHHHHHS--CCCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEEECC----------------------------EEEEEEeCCCCCcHHHHHHcC--CCCHHHHHHHHHHHHHH
Confidence            999999998742                            599999999 57999999765  89999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |+|||++|||||||||+||||+.+     +.+||+|||+|+........     ..+.+||+.|||||++.+..      
T Consensus       183 L~ylH~~~IiHRDlKp~NILl~~~-----g~vKl~DFGla~~~~~~~~~-----~~~~~GTp~YmAPEvl~~~~------  246 (346)
T 4fih_A          183 LSVLHAQGVIHRDIKSDSILLTHD-----GRVKLSDFGFCAQVSKEVPR-----RKSLVGTPYWMAPELISRLP------  246 (346)
T ss_dssp             HHHHHHTTEECCCCSGGGEEECTT-----CCEEECCCTTCEECCSSSCC-----BCCCCSCGGGCCHHHHTTCC------
T ss_pred             HHHHHHCCcccccCCHHHEEECCC-----CCEEEecCcCceecCCCCCc-----ccccccCcCcCCHHHHCCCC------
Confidence            999999999999999999999988     89999999999876543221     22578999999999997765      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcccccccccc---ccc--cCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHh
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE---VNA--LPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~---~~~--~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~  507 (588)
                      ++.++|||||||++|||++|++||.+......+.   ...  ....+..+|+++++||.+||+.||++|||++|+++   
T Consensus       247 y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~---  323 (346)
T 4fih_A          247 YGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLK---  323 (346)
T ss_dssp             BCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSSCCCCSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT---
T ss_pred             CCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHcCCChhHCcCHHHHhc---
Confidence            5678999999999999999999998753222211   111  12234568999999999999999999999999998   


Q ss_pred             hhhhcCCccccCCCC
Q psy4039         508 LYLWAPKHWLYGATP  522 (588)
Q Consensus       508 ~~~~~~h~w~~~~~~  522 (588)
                            ||||+...+
T Consensus       324 ------Hp~~~~~~~  332 (346)
T 4fih_A          324 ------HPFLAKAGP  332 (346)
T ss_dssp             ------CGGGGGCCC
T ss_pred             ------CHhhcCCCC
Confidence                  999986554

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=8.8e-56  Score=460.93  Aligned_cols=260  Identities=20%  Similarity=0.234  Sum_probs=211.6

Q ss_pred             ccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCC
Q psy4039         194 KVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPH  271 (588)
Q Consensus       194 ~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~H  271 (588)
                      ..+.|++.++||+|+||+||+|+++  |+.||||+++..                      ....+|+.+|+.+    +|
T Consensus        56 ~~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~----------------------~~~~~E~~il~~l----~H  109 (336)
T 4g3f_A           56 EVHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLE----------------------VFRVEELVACAGL----SS  109 (336)
T ss_dssp             TTTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETT----------------------TCCTHHHHTTTTC----CC
T ss_pred             chhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHH----------------------HhHHHHHHHHHhC----CC
Confidence            4478999999999999999999997  899999999531                      1234699999887    99


Q ss_pred             CceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy4039         272 PNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLL  350 (588)
Q Consensus       272 pNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~  350 (588)
                      ||||+++++|.+..                            .+|+||||| +|+|.++|+..+ .+++.++..++.||+
T Consensus       110 pnIV~l~~~~~~~~----------------------------~~~ivmEy~~gg~L~~~l~~~~-~l~e~~~~~~~~qi~  160 (336)
T 4g3f_A          110 PRIVPLYGAVREGP----------------------------WVNIFMELLEGGSLGQLIKQMG-CLPEDRALYYLGQAL  160 (336)
T ss_dssp             TTBCCEEEEEEETT----------------------------EEEEEECCCTTCBHHHHHHHHS-SCCHHHHHHHHHHHH
T ss_pred             CCCCcEEEEEEECC----------------------------EEEEEEeccCCCcHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            99999999998732                            499999999 689999998765 899999999999999


Q ss_pred             HHHHHHHhCCceeccCCCCcEEEcCCCCCCCC-ceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCc
Q psy4039         351 EGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP-QLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF  429 (588)
Q Consensus       351 ~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~-~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~  429 (588)
                      .||+|||++|||||||||+||||+.+     + .+||+|||+|+.................+||+.|||||++.+.+   
T Consensus       161 ~aL~ylH~~~IiHRDlKp~NILl~~~-----g~~vKl~DFGla~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~---  232 (336)
T 4g3f_A          161 EGLEYLHTRRILHGDVKADNVLLSSD-----GSRAALCDFGHALCLQPDGLGKSLLTGDYIPGTETHMAPEVVMGKP---  232 (336)
T ss_dssp             HHHHHHHTTTEECSCCCGGGEEECTT-----SCCEEECCCTTCEEC------------CCCCCCGGGCCHHHHTTCC---
T ss_pred             HHHHHHHHCCceecccCHHHEEEeCC-----CCEEEEeeCCCCeEccCCCcccceecCCccccCccccCHHHHCCCC---
Confidence            99999999999999999999999877     4 69999999999865432211111223468999999999998775   


Q ss_pred             cCCCCCcCchhhHHHHHHHHhcCCCCCccccccccccc-----cccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHH
Q psy4039         430 SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV-----NALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAAT  504 (588)
Q Consensus       430 ~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~-----~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~  504 (588)
                         ++.++|||||||++|||++|++||.+.........     .....++..+|+++++||.+||+.||.+|||++|+++
T Consensus       233 ---y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~  309 (336)
T 4g3f_A          233 ---CDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLKIASEPPPIREIPPSCAPLTAQAIQEGLRKEPVHRASAMELRR  309 (336)
T ss_dssp             ---CCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHHHHHHSCCGGGGSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             ---CCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHcCCCCchhcCccCCHHHHHHHHHHccCCHhHCcCHHHHHH
Confidence               55789999999999999999999987533322111     1123467789999999999999999999999999988


Q ss_pred             HHhhhh----hcCCccccC
Q psy4039         505 VCQLYL----WAPKHWLYG  519 (588)
Q Consensus       505 ~L~~~~----~~~h~w~~~  519 (588)
                      .|...+    ...|||+..
T Consensus       310 ~l~~~l~~~~~l~hPw~~~  328 (336)
T 4g3f_A          310 KVGKALQEVGGLKSPWKGE  328 (336)
T ss_dssp             HHHHHHHHTTSSCSCSSSS
T ss_pred             HHHHHHhhhhhccCCCcCC
Confidence            776654    356999974

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=4e-56  Score=458.74  Aligned_cols=262  Identities=23%  Similarity=0.305  Sum_probs=208.8

Q ss_pred             CCccccccCCeEEeeeecccCceeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcC
Q psy4039         188 PDVDDVKVDDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVEN  267 (588)
Q Consensus       188 ~~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~  267 (588)
                      ...|+++.+++++++.||+|+||+||+|++++ .||||+++.....   ..            ..+.+.+|+.+|+++  
T Consensus        28 ~~~Wei~~~~l~l~~~iG~G~fG~Vy~~~~~~-~vAvK~~~~~~~~---~~------------~~~~f~~E~~il~~l--   89 (307)
T 3omv_A           28 SYYWEIEASEVMLSTRIGSGSFGTVYKGKWHG-DVAVKILKVVDPT---PE------------QFQAFRNEVAVLRKT--   89 (307)
T ss_dssp             -CCCBCCTTSCCEEEECCCCSSSEEEEEESSS-EEEEEECCCSSCC---HH------------HHHHHHHHHHHHTTC--
T ss_pred             CcCcEEcHHHeEEeeEEeeCCCcEEEEEEECC-cEEEEEEEecCCC---HH------------HHHHHHHHHHHHHhC--
Confidence            45689999999999999999999999999875 6999998532211   11            224577899999987  


Q ss_pred             CCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHH
Q psy4039         268 LPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLF  346 (588)
Q Consensus       268 l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~  346 (588)
                        +|||||++++++.+.                             .+++||||| +|+|.++|......+++.++..|+
T Consensus        90 --~HpNIV~l~g~~~~~-----------------------------~~~iVmEy~~gGsL~~~l~~~~~~l~~~~~~~i~  138 (307)
T 3omv_A           90 --RHVNILLFMGYMTKD-----------------------------NLAIVTQWCEGSSLYKHLHVQETKFQMFQLIDIA  138 (307)
T ss_dssp             --CCTTBCCEEEEECSS-----------------------------SCEEEEECCSSCBHHHHHHTSCCCCCHHHHHHHH
T ss_pred             --CCCCEeeEEEEEECC-----------------------------eEEEEEEcCCCCCHHHHHhhcCCCCCHHHHHHHH
Confidence              999999999987642                             279999999 689999998776689999999999


Q ss_pred             HHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCC
Q psy4039         347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP  426 (588)
Q Consensus       347 ~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~  426 (588)
                      .||++||+|||+++||||||||+||||+++     +.+||+|||+|+........   ......+||+.|||||++.+..
T Consensus       139 ~qia~gL~yLH~~~IiHRDlKp~NILl~~~-----~~~Ki~DFGla~~~~~~~~~---~~~~~~~GT~~ymAPE~l~~~~  210 (307)
T 3omv_A          139 RQTAQGMDYLHAKNIIHRDMKSNNIFLHEG-----LTVKIGDFGLATVKSRWSGS---QQVEQPTGSVLWMAPEVIRMQD  210 (307)
T ss_dssp             HHHHHHHHHHHHTTCBCSCCCSSSEEEETT-----EEEEECCCSSCBC---------------CCCCTTSCCHHHHHCCS
T ss_pred             HHHHHHHHHHHHCCccCCccCHHHEEECCC-----CcEEEeeccCceecccCCcc---eeecccccCCCccCHHHhhccC
Confidence            999999999999999999999999999988     89999999999875442211   1123568999999999997643


Q ss_pred             CCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccc--------cccccccCCCCCCccHHHHHHHHHhhhhCCCCCCC
Q psy4039         427 GLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNT--------DYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS  498 (588)
Q Consensus       427 ~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~--------~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps  498 (588)
                      ..   .++.++|||||||++|||+||+.||.+.....        .......+..+..+|+++.+||.+||+.||++|||
T Consensus       211 ~~---~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~li~~cl~~dP~~RPs  287 (307)
T 3omv_A          211 NN---PFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPL  287 (307)
T ss_dssp             SC---CCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHTTCCCCCSTTSCTTSCHHHHHHHHHHTCSSSTTSCC
T ss_pred             CC---CCCcHHHhHhHHHHHHHHHHCCCCCCCCChHHHHHHHHhcCCCCCCcccccccchHHHHHHHHHHcCCCHhHCcC
Confidence            11   14578999999999999999999997632211        11112233456789999999999999999999999


Q ss_pred             HHHHHHHHhhh
Q psy4039         499 AELAATVCQLY  509 (588)
Q Consensus       499 ~~e~l~~L~~~  509 (588)
                      ++++++.|+..
T Consensus       288 ~~ei~~~Le~l  298 (307)
T 3omv_A          288 FPQILSSIELL  298 (307)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999877654

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=1.1e-56  Score=469.79  Aligned_cols=255  Identities=22%  Similarity=0.327  Sum_probs=207.9

Q ss_pred             ccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCC
Q psy4039         194 KVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPH  271 (588)
Q Consensus       194 ~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~H  271 (588)
                      .+++|++.+.||+|+||+||+|++.  |+.||||++........               ..+.+.+|+.+|+.+    +|
T Consensus        22 sme~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~---------------~~~~~~~E~~il~~l----~H   82 (350)
T 4b9d_A           22 SMEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSK---------------EREESRREVAVLANM----KH   82 (350)
T ss_dssp             CCCCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHH---------------HHHHHHHHHHHHHHC----CC
T ss_pred             cccceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHH---------------HHHHHHHHHHHHHHC----CC
Confidence            3589999999999999999999997  89999999965332211               124567899999998    99


Q ss_pred             CceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc-CCCCHHHHHHHHHHH
Q psy4039         272 PNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC-AQLSMHERVLLFTQL  349 (588)
Q Consensus       272 pNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~-~~l~~~~~~~i~~ql  349 (588)
                      ||||+++++|.+..                            .+|+||||| +|+|.++|..++ ..+++.+++.|+.||
T Consensus        83 pnIV~~~~~~~~~~----------------------------~~yiVmEy~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi  134 (350)
T 4b9d_A           83 PNIVQYRESFEENG----------------------------SLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQI  134 (350)
T ss_dssp             TTBCCEEEEEEETT----------------------------EEEEEEECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHH
T ss_pred             CCCCcEEEEEEECC----------------------------EEEEEEeCCCCCcHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            99999999998742                            599999999 689999998653 457999999999999


Q ss_pred             HHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCc
Q psy4039         350 LEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF  429 (588)
Q Consensus       350 ~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~  429 (588)
                      +.||.|||++|||||||||+||||+.+     +.+||+|||+|+.......     .....+||+.|||||++.+..   
T Consensus       135 ~~aL~ylH~~~IiHRDlKp~NILl~~~-----g~vKl~DFGla~~~~~~~~-----~~~~~~GT~~YmAPE~l~~~~---  201 (350)
T 4b9d_A          135 CLALKHVHDRKILHRDIKSQNIFLTKD-----GTVQLGDFGIARVLNSTVE-----LARACIGTPYYLSPEICENKP---  201 (350)
T ss_dssp             HHHHHHHHHTTCEETTCCGGGEEECTT-----CCEEECSTTEESCCCHHHH-----HHHHHHSCCTTCCHHHHTTCC---
T ss_pred             HHHHHHHHHCCeeeccCCHHHEEECCC-----CCEEEcccccceeecCCcc-----cccccCCCccccCHHHHCCCC---
Confidence            999999999999999999999999988     8999999999987643211     112568999999999998765   


Q ss_pred             cCCCCCcCchhhHHHHHHHHhcCCCCCccccccccc---cccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHH
Q psy4039         430 SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY---EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVC  506 (588)
Q Consensus       430 ~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~---~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L  506 (588)
                         ++.++|||||||++|||++|++||.+......+   .....++.+..+|+++++||.+||+.||++|||++|+++  
T Consensus       202 ---y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~--  276 (350)
T 4b9d_A          202 ---YNNKSDIWALGCVLYELCTLKHAFEAGSMKNLVLKIISGSFPPVSLHYSYDLRSLVSQLFKRNPRDRPSVNSILE--  276 (350)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT--
T ss_pred             ---CCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHccCChhHCcCHHHHhc--
Confidence               457899999999999999999999875332221   223445677889999999999999999999999999998  


Q ss_pred             hhhhhcCCccccCC
Q psy4039         507 QLYLWAPKHWLYGA  520 (588)
Q Consensus       507 ~~~~~~~h~w~~~~  520 (588)
                             |||++..
T Consensus       277 -------hp~~~~~  283 (350)
T 4b9d_A          277 -------KGFIAKR  283 (350)
T ss_dssp             -------SHHHHTT
T ss_pred             -------CHHhhcC
Confidence                   9999843

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=5.7e-56  Score=454.27  Aligned_cols=252  Identities=17%  Similarity=0.247  Sum_probs=202.9

Q ss_pred             eEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceE
Q psy4039         198 IQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVV  275 (588)
Q Consensus       198 ~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV  275 (588)
                      |++.++||+|+||+||+|.+.  +..||||++.......               ...+.+.+|+.+|+.+    +|||||
T Consensus        28 ~~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~---------------~~~~~~~~E~~il~~l----~HpnIV   88 (290)
T 3fpq_A           28 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTK---------------SERQRFKEEAEMLKGL----QHPNIV   88 (290)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCH---------------HHHHHHHHHHHHHHTC----CCTTBC
T ss_pred             EEeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCH---------------HHHHHHHHHHHHHHhC----CCCCCC
Confidence            478889999999999999997  7899999996432211               1234577899999998    999999


Q ss_pred             EEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy4039         276 VMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVT  354 (588)
Q Consensus       276 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~  354 (588)
                      +++++|.+..                        .....+|+||||| +|+|.++|...+ .+++..+..|+.||+.||+
T Consensus        89 ~~~~~~~~~~------------------------~~~~~~~lvmEy~~gg~L~~~l~~~~-~l~~~~~~~~~~qi~~aL~  143 (290)
T 3fpq_A           89 RFYDSWESTV------------------------KGKKCIVLVTELMTSGTLKTYLKRFK-VMKIKVLRSWCRQILKGLQ  143 (290)
T ss_dssp             CEEEEEEEEE------------------------TTEEEEEEEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHH
T ss_pred             cEEEEEeecc------------------------CCCcEEEEEEeCCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHH
Confidence            9999997631                        1123589999999 689999998765 8999999999999999999


Q ss_pred             HHHhCC--ceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         355 HLNMHR--TAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       355 yLH~~~--IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |||+++  ||||||||+||||+...    +.+||+|||+|+.....       ...+.+||+.|||||++.+.       
T Consensus       144 ylH~~~~~IiHRDlKp~NILl~~~~----g~vKl~DFGla~~~~~~-------~~~~~~GTp~YmAPE~~~~~-------  205 (290)
T 3fpq_A          144 FLHTRTPPIIHRDLKCDNIFITGPT----GSVKIGDLGLATLKRAS-------FAKAVIGTPEFMAPEMYEEK-------  205 (290)
T ss_dssp             HHHTSSSCCCCCCCCGGGEEESSTT----SCEEECCTTGGGGCCTT-------SBEESCSSCCCCCGGGGGTC-------
T ss_pred             HHHHCCCCEEecccChhheeEECCC----CCEEEEeCcCCEeCCCC-------ccCCcccCccccCHHHcCCC-------
Confidence            999998  99999999999998531    78999999999864332       12257899999999998642       


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcccccccc----ccc-cccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHh
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD----YEV-NALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~----~~~-~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~  507 (588)
                      ++.++|||||||++|||+||+.||.+......    ... ...+.++..+++++++||.+||+.||++|||++|+++   
T Consensus       206 y~~~~DiwSlGvilyelltg~~Pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~s~~e~l~---  282 (290)
T 3fpq_A          206 YDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN---  282 (290)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTCCCGGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT---
T ss_pred             CCcHHHHHHHHHHHHHHHHCCCCCCCCCcHHHHHHHHHcCCCCCCCCccCCHHHHHHHHHHccCChhHCcCHHHHhc---
Confidence            56789999999999999999999975322111    111 1122345667899999999999999999999999999   


Q ss_pred             hhhhcCCccccCC
Q psy4039         508 LYLWAPKHWLYGA  520 (588)
Q Consensus       508 ~~~~~~h~w~~~~  520 (588)
                            ||||++.
T Consensus       283 ------Hp~~~~~  289 (290)
T 3fpq_A          283 ------HAFFQEE  289 (290)
T ss_dssp             ------SGGGC--
T ss_pred             ------CccccCC
Confidence                  9999753

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=100.00  E-value=8.2e-56  Score=455.59  Aligned_cols=256  Identities=21%  Similarity=0.323  Sum_probs=206.2

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEEC-----CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhh
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATFR-----GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSV  265 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-----g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l  265 (588)
                      ..++.++|++.+.||+|+||+||+|++.     ++.||||++.+.....               .....+.+|+.+|+.+
T Consensus        19 ~~~~p~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~---------------~~~~~~~~E~~il~~l   83 (304)
T 3ubd_A           19 EKADPSQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKV---------------RDRVRTKMERDILVEV   83 (304)
T ss_dssp             CCCCGGGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEE---------------EECC------CCCCCC
T ss_pred             ccCCccccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcCh---------------HHHHHHHHHHHHHHHC
Confidence            4455689999999999999999999873     6789999996422111               1233566799999887


Q ss_pred             cCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHH
Q psy4039         266 ENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVL  344 (588)
Q Consensus       266 ~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~  344 (588)
                          +|||||+++++|.+..                            .+|+||||| +|+|.++|...+ .+++.++..
T Consensus        84 ----~HpnIv~l~~~~~~~~----------------------------~~~ivmEy~~gg~L~~~l~~~~-~l~e~~~~~  130 (304)
T 3ubd_A           84 ----NHPFIVKLHYAFQTEG----------------------------KLYLILDFLRGGDLFTRLSKEV-MFTEEDVKF  130 (304)
T ss_dssp             ----CCTTEECEEEEEEETT----------------------------EEEEEECCCTTCEEHHHHHHHC-CCCHHHHHH
T ss_pred             ----CCCCCCeEEEEEEECC----------------------------EEEEEEEcCCCCCHHHHHHhcC-CCCHHHHHH
Confidence                9999999999998742                            499999999 689999998765 899999999


Q ss_pred             HHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhc
Q psy4039         345 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALA  424 (588)
Q Consensus       345 i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~  424 (588)
                      ++.||+.||+|||++||+||||||+|||++.+     +.+||+|||+|+.......     ...+.+||+.|||||++.+
T Consensus       131 ~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~-----g~vKl~DFGla~~~~~~~~-----~~~~~~GT~~YmAPE~~~~  200 (304)
T 3ubd_A          131 YLAELALALDHLHSLGIIYRDLKPENILLDEE-----GHIKLTDFGLSKESIDHEK-----KAYSFCGTVEYMAPEVVNR  200 (304)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSSCCGGGEEECTT-----SCEEEESSEEEEC-----C-----CCCSCCCCGGGCCHHHHHT
T ss_pred             HHHHHHHHHHHHHHCCCcCCCCCHHHeEEcCC-----CCEEecccccceeccCCCc-----cccccccCcccCCHHHhcc
Confidence            99999999999999999999999999999988     8999999999986543221     1225789999999999987


Q ss_pred             CCCCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccccc--ccccCCCCCCccHHHHHHHHHhhhhCCCCCCC----
Q psy4039         425 TPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVAKLLENDPSDRPS----  498 (588)
Q Consensus       425 ~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~--~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps----  498 (588)
                      ..      ++.++||||+||++|||+||++||.+......+.  ....+.+|..+|+++++||.+||+.||++|||    
T Consensus       201 ~~------y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~~dP~~R~ta~~~  274 (304)
T 3ubd_A          201 RG------HTQSADWWSFGVLMFEMLTGTLPFQGKDRKETMTMILKAKLGMPQFLSPEAQSLLRMLFKRNPANRLGAGPD  274 (304)
T ss_dssp             SC------CCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSGGGSTTCSTT
T ss_pred             CC------CCCCCcccchHHHHHHHHhCCCCCCCcCHHHHHHHHHcCCCCCCCcCCHHHHHHHHHHcccCHHHCCCCCcC
Confidence            76      5578999999999999999999998753322221  12334567889999999999999999999998    


Q ss_pred             -HHHHHHHHhhhhhcCCccccC
Q psy4039         499 -AELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       499 -~~e~l~~L~~~~~~~h~w~~~  519 (588)
                       ++|+++         ||||+.
T Consensus       275 ~~~eil~---------Hp~f~~  287 (304)
T 3ubd_A          275 GVEEIKR---------HSFFST  287 (304)
T ss_dssp             THHHHHT---------SGGGTT
T ss_pred             CHHHHHc---------CccccC
Confidence             578888         999974

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=5.2e-55  Score=467.48  Aligned_cols=251  Identities=24%  Similarity=0.331  Sum_probs=211.6

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      +.|++.+.||+|+||+||+|+++  |+.||||++.....                 ...+.+.+|+.+|+.+    +|||
T Consensus       151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~-----------------~~~~~~~~Ei~il~~l----~Hpn  209 (423)
T 4fie_A          151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQ-----------------QRRELLFNEVVIMRDY----QHEN  209 (423)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTC-----------------SSGGGHHHHHHHHHHC----CCTT
T ss_pred             HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccch-----------------hHHHHHHHHHHHHHhC----CCCC
Confidence            67999999999999999999997  89999999964221                 1334577899999998    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      ||+++++|.+..                            .+|+||||| +|+|.+++...  .+++.++..|+.||+.|
T Consensus       210 IV~l~~~~~~~~----------------------------~~~iVmEy~~gG~L~~~i~~~--~l~e~~~~~~~~qil~a  259 (423)
T 4fie_A          210 VVEMYNSYLVGD----------------------------ELWVVMEFLEGGALTDIVTHT--RMNEEQIAAVCLAVLQA  259 (423)
T ss_dssp             BCCEEEEEEETT----------------------------EEEEEEECCTTEEHHHHHHHS--CCCHHHHHHHHHHHHHH
T ss_pred             CCceEEEEEECC----------------------------EEEEEEeCCCCCcHHHHHhcc--CCCHHHHHHHHHHHHHH
Confidence            999999998742                            599999999 68999999765  79999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |+|||++|||||||||+||||+.+     +.+||+|||+|+.......     ...+.+||+.|||||++.+..      
T Consensus       260 L~ylH~~~IiHRDiKp~NILl~~~-----g~vKl~DFGla~~~~~~~~-----~~~~~~GTp~YmAPEvl~~~~------  323 (423)
T 4fie_A          260 LSVLHAQGVIHRDIKSDSILLTHD-----GRVKLSDFGFCAQVSKEVP-----RRKSLVGTPYWMAPELISRLP------  323 (423)
T ss_dssp             HHHHHHTTEECCCCSTTTEEECTT-----CCEEECCCTTCEECCSSCC-----CBCCCEECTTTCCHHHHTTCC------
T ss_pred             HHHHHHCCeecccCCHHHEEEcCC-----CCEEEecCccceECCCCCc-----cccccccCcCcCCHHHHCCCC------
Confidence            999999999999999999999988     8999999999987654322     122578999999999998765      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcccccccccc---cc--ccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHh
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE---VN--ALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~---~~--~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~  507 (588)
                      ++.++|||||||++|||++|++||.+......+.   ..  .....+..+|+++++||.+||+.||++|||++|+++   
T Consensus       324 y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~ell~---  400 (423)
T 4fie_A          324 YGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLK---  400 (423)
T ss_dssp             BCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSCTTSSCHHHHHHHHHHSCSSTTTSCCHHHHTT---
T ss_pred             CCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHcCCChhHCcCHHHHhc---
Confidence            5678999999999999999999998753222111   11  122344678999999999999999999999999988   


Q ss_pred             hhhhcCCccccCCCC
Q psy4039         508 LYLWAPKHWLYGATP  522 (588)
Q Consensus       508 ~~~~~~h~w~~~~~~  522 (588)
                            ||||+...+
T Consensus       401 ------Hp~~~~~~~  409 (423)
T 4fie_A          401 ------HPFLAKAGP  409 (423)
T ss_dssp             ------CGGGGGCCC
T ss_pred             ------CHHhcCCCC
Confidence                  999986544

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=3.9e-55  Score=450.56  Aligned_cols=259  Identities=22%  Similarity=0.264  Sum_probs=211.4

Q ss_pred             ccccccCCeEEeeeecccCceeEEEEEEC-------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHH
Q psy4039         190 VDDVKVDDIQIGKFIAKGTNAVVYEATFR-------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLM  262 (588)
Q Consensus       190 ~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il  262 (588)
                      .+.+..++|.+.+.||+|+||+||+|++.       +..||||+++...     ..            ..+.+.+|+.+|
T Consensus         7 ~~~I~r~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~-----~~------------~~~~f~~E~~il   69 (299)
T 4asz_A            7 VQHIKRHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDAS-----DN------------ARKDFHREAELL   69 (299)
T ss_dssp             CCBCCGGGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCC-----HH------------HHHHHHHHHHHH
T ss_pred             hcccCHHHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCC-----hH------------HHHHHHHHHHHH
Confidence            34566789999999999999999999875       6789999995321     11            224577899999


Q ss_pred             hhhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc-------
Q psy4039         263 NSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC-------  334 (588)
Q Consensus       263 ~~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~-------  334 (588)
                      +++    +|||||+++++|.+..                            .+|+||||| +|+|.++|+..+       
T Consensus        70 ~~l----~HpnIV~l~g~~~~~~----------------------------~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~  117 (299)
T 4asz_A           70 TNL----QHEHIVKFYGVCVEGD----------------------------PLIMVFEYMKHGDLNKFLRAHGPDAVLMA  117 (299)
T ss_dssp             TTC----CCTTBCCEEEEECSSS----------------------------SEEEEEECCTTCBHHHHHHHTSHHHHHC-
T ss_pred             HhC----CCCCCccEEEEEeeCC----------------------------EEEEEEEcCCCCcHHHHHHhcCccccccc
Confidence            998    9999999999998742                            399999999 689999998642       


Q ss_pred             -----CCCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCcccccccccc
Q psy4039         335 -----AQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIE  409 (588)
Q Consensus       335 -----~~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~  409 (588)
                           ..+++.++..|+.||++||.|||+++||||||||+|||++.+     +.+||+|||+|+........   .....
T Consensus       118 ~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDlKp~NILl~~~-----~~~Ki~DFGla~~~~~~~~~---~~~~~  189 (299)
T 4asz_A          118 EGNPPTELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGEN-----LLVKIGDFGMSRDVYSTDYY---RVGGH  189 (299)
T ss_dssp             ---CCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGG-----GCEEECCCSCHHHHTGGGCE---EETTT
T ss_pred             ccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCccCHhhEEECCC-----CcEEECCcccceecCCCCce---eecCc
Confidence                 369999999999999999999999999999999999999988     89999999999875442211   11124


Q ss_pred             ccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHH
Q psy4039         410 LGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLV  485 (588)
Q Consensus       410 ~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li  485 (588)
                      .+||+.|||||++.+..      ++.++|||||||++|||+| |+.||.+......   ......++.|..+|+++.+||
T Consensus       190 ~~gt~~ymAPE~~~~~~------~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~li  263 (299)
T 4asz_A          190 TMLPIRWMPPESIMYRK------FTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIECITQGRVLQRPRTCPQEVYELM  263 (299)
T ss_dssp             EEECGGGCCHHHHHHCC------CCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHHTCCCCCCTTCCHHHHHHH
T ss_pred             eecChhhcCHHHHcCCC------CCchhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCCCCCCccchHHHHHHH
Confidence            56999999999998876      5678999999999999998 8999987432221   222345567889999999999


Q ss_pred             HHhhhhCCCCCCCHHHHHHHHhhhhh
Q psy4039         486 AKLLENDPSDRPSAELAATVCQLYLW  511 (588)
Q Consensus       486 ~~~L~~dP~~Rps~~e~l~~L~~~~~  511 (588)
                      .+||+.||++|||++++...|+.+.-
T Consensus       264 ~~cl~~dP~~RPs~~~i~~~L~~~~~  289 (299)
T 4asz_A          264 LGCWQREPHMRKNIKGIHTLLQNLAK  289 (299)
T ss_dssp             HHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHcCCChhHCcCHHHHHHHHHHHHh
Confidence            99999999999999999888776543

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=1.4e-54  Score=452.33  Aligned_cols=264  Identities=22%  Similarity=0.256  Sum_probs=208.7

Q ss_pred             ccccccCCeEEeeeecccCceeEEEEEEC-------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHH
Q psy4039         190 VDDVKVDDIQIGKFIAKGTNAVVYEATFR-------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLM  262 (588)
Q Consensus       190 ~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il  262 (588)
                      ...+..++|.+.++||+|+||+||+|+++       ++.||||+++...     ..            ..+.|.+|+.+|
T Consensus        35 ~~~i~~~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~-----~~------------~~~~f~~E~~il   97 (329)
T 4aoj_A           35 VHHIKRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEAS-----ES------------ARQDFQREAELL   97 (329)
T ss_dssp             SCBCCGGGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCS-----HH------------HHHHHHHHHHHH
T ss_pred             hcccCHHHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCC-----HH------------HHHHHHHHHHHH
Confidence            34566689999999999999999999975       6789999995311     11            224577899999


Q ss_pred             hhhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc-------
Q psy4039         263 NSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC-------  334 (588)
Q Consensus       263 ~~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~-------  334 (588)
                      +++    +|||||+++++|.+..                            .+|+||||| +|+|.++|+...       
T Consensus        98 ~~l----~HpnIV~l~g~~~~~~----------------------------~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~  145 (329)
T 4aoj_A           98 TML----QHQHIVRFFGVCTEGR----------------------------PLLMVFEYMRHGDLNRFLRSHGPDAKLLA  145 (329)
T ss_dssp             TTC----CCTTBCCEEEEECSSS----------------------------SEEEEEECCTTCBHHHHHHTSSCC-----
T ss_pred             HhC----CCCCCCcEEEEEEECC----------------------------EEEEEEEcCCCCcHHHHHHhcCccccccc
Confidence            997    9999999999998742                            399999999 689999997532       


Q ss_pred             -------CCCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCcccccccc
Q psy4039         335 -------AQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD  407 (588)
Q Consensus       335 -------~~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~  407 (588)
                             ..+++.++..|+.||++||.|||+++||||||||+||||+.+     +.+||+|||+|+........   ...
T Consensus       146 ~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDLKp~NILl~~~-----~~~Ki~DFGla~~~~~~~~~---~~~  217 (329)
T 4aoj_A          146 GGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQG-----LVVKIGDFGMSRDIYSTDYY---RVG  217 (329)
T ss_dssp             ------CCSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETT-----TEEEECCCC-----------------
T ss_pred             ccccccCCCCCHHHHHHHHHHHHHHHHHHhcCCeecccccHhhEEECCC-----CcEEEcccccceeccCCCcc---eec
Confidence                   359999999999999999999999999999999999999988     89999999999876442221   112


Q ss_pred             ccccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHH
Q psy4039         408 IELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRR  483 (588)
Q Consensus       408 ~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~  483 (588)
                      ...+||+.|||||++.+..      ++.++|||||||++|||+| |+.||.+......   +.....++.|..+|+++.+
T Consensus       218 ~~~~gt~~ymAPE~~~~~~------~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i~~g~~~~~p~~~~~~~~~  291 (329)
T 4aoj_A          218 GRTMLPIRWMPPESILYRK------FTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDCITQGRELERPRACPPEVYA  291 (329)
T ss_dssp             --CCCCGGGCCHHHHTTCC------CCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHHHHHHHHHTCCCCCCTTCCHHHHH
T ss_pred             CcccccccccChhhhcCCC------CCccccccchHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCCCCCcccccHHHHH
Confidence            2467999999999998765      5578999999999999999 8999987432221   1223456678899999999


Q ss_pred             HHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCcc
Q psy4039         484 LVAKLLENDPSDRPSAELAATVCQLYLWAPKHW  516 (588)
Q Consensus       484 Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w  516 (588)
                      ||.+||+.||++|||++++++.|+.+.-.|..|
T Consensus       292 li~~cl~~dP~~RPs~~ei~~~L~~l~~~pp~~  324 (329)
T 4aoj_A          292 IMRGCWQREPQQRHSIKDVHARLQALAQAPPVY  324 (329)
T ss_dssp             HHHHHCCSSTTTSCCHHHHHHHHHHHHHSCC--
T ss_pred             HHHHHcCcChhHCcCHHHHHHHHHHHhhCCccc
Confidence            999999999999999999999998776655444

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=9.6e-55  Score=449.47  Aligned_cols=257  Identities=20%  Similarity=0.232  Sum_probs=212.1

Q ss_pred             ccccccCCeEEeeeecccCceeEEEEEEC-------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHH
Q psy4039         190 VDDVKVDDIQIGKFIAKGTNAVVYEATFR-------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLM  262 (588)
Q Consensus       190 ~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il  262 (588)
                      ..++..+++++.+.||+|+||+||+|.+.       ++.||||+++....                ....+.|.+|+.+|
T Consensus        20 ~~ei~~~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~----------------~~~~~~f~~E~~il   83 (308)
T 4gt4_A           20 LKEISLSAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAE----------------GPLREEFRHEAMLR   83 (308)
T ss_dssp             CCBCCGGGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CC----------------C-CHHHHHHHHHHH
T ss_pred             cccCCHHHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccC----------------hHHHHHHHHHHHHH
Confidence            35677889999999999999999999974       57899999853211                11235678899999


Q ss_pred             hhhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh--------
Q psy4039         263 NSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER--------  333 (588)
Q Consensus       263 ~~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~--------  333 (588)
                      +++    +|||||+++|+|.+..                            .+++||||| +|+|.++|..+        
T Consensus        84 ~~l----~HpNIV~l~g~~~~~~----------------------------~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~  131 (308)
T 4gt4_A           84 ARL----QHPNVVCLLGVVTKDQ----------------------------PLSMIFSYCSHGDLHEFLVMRSPHSDVGS  131 (308)
T ss_dssp             HHC----CCTTBCCEEEEECSSS----------------------------SCEEEEECCSSCBHHHHHHTTCSSCCCC-
T ss_pred             HhC----CCCCCCCcceEEEECC----------------------------EEEEEEEcCCCCcHHHHHHhhCccccccc
Confidence            998    9999999999998643                            289999999 68999999753        


Q ss_pred             -------cCCCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccc
Q psy4039         334 -------CAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSA  406 (588)
Q Consensus       334 -------~~~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~  406 (588)
                             ...+++.++..|+.||++||+|||+++||||||||+||||+++     +.+||+|||+|+........   ..
T Consensus       132 ~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDLK~~NILl~~~-----~~~Ki~DFGlar~~~~~~~~---~~  203 (308)
T 4gt4_A          132 TDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHHVVHKDLATRNVLVYDK-----LNVKISDLGLFREVYAADYY---KL  203 (308)
T ss_dssp             ----CCEECCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGG-----GCEEECCSCCBCGGGGGGCB---CS
T ss_pred             cccccccccCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCccccceEECCC-----CCEEECCcccceeccCCCce---eE
Confidence                   1358999999999999999999999999999999999999988     89999999999875432211   11


Q ss_pred             cccccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHH
Q psy4039         407 DIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMR  482 (588)
Q Consensus       407 ~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~  482 (588)
                      ....+||+.|||||++.+..      ++.++|||||||++|||+| |..||.+......   +.....++.|..+|+++.
T Consensus       204 ~~~~~gt~~ymAPE~l~~~~------~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~~~~~~i~~~~~~~~p~~~~~~~~  277 (308)
T 4gt4_A          204 LGNSLLPIRWMAPEAIMYGK------FSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVVEMIRNRQVLPCPDDCPAWVY  277 (308)
T ss_dssp             SSSSCBCGGGCCHHHHHHCC------CCHHHHHHHHHHHHHHHHTTTCCTTTTCCHHHHHHHHHTTCCCCCCTTCCHHHH
T ss_pred             ecccccCCcccCHHHHhCCC------CCccchhhhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCcccchHHHH
Confidence            22567999999999998776      5678999999999999998 8999987432211   122344567889999999


Q ss_pred             HHHHHhhhhCCCCCCCHHHHHHHHhh
Q psy4039         483 RLVAKLLENDPSDRPSAELAATVCQL  508 (588)
Q Consensus       483 ~Li~~~L~~dP~~Rps~~e~l~~L~~  508 (588)
                      +||.+||+.||++|||++++++.|+.
T Consensus       278 ~li~~C~~~dP~~RPs~~ei~~~L~a  303 (308)
T 4gt4_A          278 ALMIECWNEFPSRRPRFKDIHSRLRA  303 (308)
T ss_dssp             HHHHHHTCSSGGGSCCHHHHHHHHHT
T ss_pred             HHHHHHcCCChhHCcCHHHHHHHHHh
Confidence            99999999999999999999998874

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=100.00  E-value=3.2e-53  Score=452.91  Aligned_cols=263  Identities=23%  Similarity=0.305  Sum_probs=207.8

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++++.||+|+||+||+|+++  |+.||||++++......               ..+.+.+|+.+|+.+    +|||
T Consensus        54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~---------------~~~~~~~Ei~il~~l----~Hpn  114 (398)
T 4b99_A           54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVT---------------NAKRTLRELKILKHF----KHDN  114 (398)
T ss_dssp             SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHH---------------HHHHHHHHHHHHHHC----CCTT
T ss_pred             CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchH---------------HHHHHHHHHHHHHhc----CCCC
Confidence            67999999999999999999997  89999999954221110               123456799999998    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      ||++++++....                      .+.....+|+|||||+|+|.+++...+ .+++.++..+++||+.||
T Consensus       115 Iv~l~~~~~~~~----------------------~~~~~~~~~ivmE~~~g~L~~~i~~~~-~l~~~~~~~~~~qil~al  171 (398)
T 4b99_A          115 IIAIKDILRPTV----------------------PYGEFKSVYVVLDLMESDLHQIIHSSQ-PLTLEHVRYFLYQLLRGL  171 (398)
T ss_dssp             BCCEEEECCCSS----------------------CTTTCCCEEEEEECCSEEHHHHHTSSS-CCCHHHHHHHHHHHHHHH
T ss_pred             cceEeeeeeccc----------------------ccccCCEEEEEEeCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHH
Confidence            999999987632                      223344699999999999999997654 899999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN  433 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~  433 (588)
                      .|||++|||||||||+|||++.+     +.+||+|||+|+........ ......+.+||+.|||||++.+..+     +
T Consensus       172 ~ylH~~~iiHRDlKP~NIl~~~~-----~~~Ki~DFGla~~~~~~~~~-~~~~~~~~~GT~~Y~APEv~~~~~~-----~  240 (398)
T 4b99_A          172 KYMHSAQVIHRDLKPSNLLVNEN-----CELKIGDFGMARGLCTSPAE-HQYFMTEYVATRWYRAPELMLSLHE-----Y  240 (398)
T ss_dssp             HHHHHTTCBCCCCCGGGEEECTT-----CCEEECCCTTCBCC--------CCCCCSSCCCCTTCCHHHHTTCSC-----C
T ss_pred             HHHHHCcCcCCCcCccccccCCC-----CCEEEeecceeeecccCccc-cccccccceeChHhcCHHHhcCCCC-----C
Confidence            99999999999999999999988     89999999999876442211 1122236789999999999977542     4


Q ss_pred             CCcCchhhHHHHHHHHhcCCCCCccccccccccc-------------------------cccC--------CCCCCccHH
Q psy4039         434 YSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV-------------------------NALP--------QLNTNVPEV  480 (588)
Q Consensus       434 ~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~-------------------------~~~~--------~~~~~~~~~  480 (588)
                      +.++||||+||++|||++|++||.+.........                         ...+        .+...++++
T Consensus       241 ~~~~DiWSlG~il~ell~G~~pF~g~~~~~~l~~I~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  320 (398)
T 4b99_A          241 TQAIDLWSVGCIFGEMLARRQLFPGKNYVHQLQLIMMVLGTPSPAVIQAVGAERVRAYIQSLPPRQPVPWETVYPGADRQ  320 (398)
T ss_dssp             CTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCCGGGTC-----CHHHHHHSSCCCCCCCHHHHSTTCCHH
T ss_pred             CChhheehhHHHHHHHHHCCCCCCCCCHHHHHHHHHHhcCCCChHHhhhhhhhhhhhhhhcCCCcCCCCHHHhCCCCCHH
Confidence            5789999999999999999999976421110000                         0000        112357899


Q ss_pred             HHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccCC
Q psy4039         481 MRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGA  520 (588)
Q Consensus       481 l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~  520 (588)
                      +++||.+||+.||.+|||++|+++         ||||+..
T Consensus       321 ~~dLl~~mL~~dP~~R~ta~e~L~---------Hp~f~~~  351 (398)
T 4b99_A          321 ALSLLGRMLRFEPSARISAAAALR---------HPFLAKY  351 (398)
T ss_dssp             HHHHHHHHSCSSTTTSCCHHHHTT---------SGGGTTT
T ss_pred             HHHHHHHHCcCChhHCcCHHHHhc---------CHhhCcC
Confidence            999999999999999999999998         9999854

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=100.00  E-value=1.8e-53  Score=447.68  Aligned_cols=262  Identities=21%  Similarity=0.240  Sum_probs=214.2

Q ss_pred             CccccccCCeEEeeeecccCceeEEEEEEC-------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHH
Q psy4039         189 DVDDVKVDDIQIGKFIAKGTNAVVYEATFR-------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDML  261 (588)
Q Consensus       189 ~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~i  261 (588)
                      ..|++..++|++++.||+|+||+||+|.+.       ++.||||++......                ...+.+.+|+.+
T Consensus        57 ~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~----------------~~~~~~~~E~~i  120 (353)
T 4ase_A           57 SKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATH----------------SEHRALMSELKI  120 (353)
T ss_dssp             HHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCH----------------HHHHHHHHHHHH
T ss_pred             cccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccCh----------------HHHHHHHHHHHH
Confidence            357888999999999999999999999986       367999999532211                022456789999


Q ss_pred             HhhhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc------
Q psy4039         262 MNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC------  334 (588)
Q Consensus       262 l~~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~------  334 (588)
                      |.++   ..|||||+++++|.+..                           ..+++||||| +|+|.++|+...      
T Consensus       121 l~~l---~hhpnIV~l~g~~~~~~---------------------------~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~  170 (353)
T 4ase_A          121 LIHI---GHHLNVVNLLGACTKPG---------------------------GPLMVIVEFCKFGNLSTYLRSKRNEFVPY  170 (353)
T ss_dssp             HHHH---CCCTTBCCEEEEECCTT---------------------------SCCEEEEECCTTEEHHHHHHHTGGGBCCC
T ss_pred             HHHc---CCCCcEEEEEEEEEecC---------------------------CEEEEEEEcCCCCCHHHHHHhcccccccc
Confidence            9998   34599999999986531                           1389999999 689999998642      


Q ss_pred             ---------CCCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCcccccc
Q psy4039         335 ---------AQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSS  405 (588)
Q Consensus       335 ---------~~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~  405 (588)
                               ..+++.++..++.||++||+|||+++||||||||+|||++++     +.+||+|||+|+........   .
T Consensus       171 ~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~iiHRDLK~~NILl~~~-----~~vKi~DFGlar~~~~~~~~---~  242 (353)
T 4ase_A          171 KVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEK-----NVVKICDFGLARDIYKDPDY---V  242 (353)
T ss_dssp             -------CTTCBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGG-----GCEEECCCGGGSCTTTCTTS---E
T ss_pred             cccchhhccccCCHHHHHHHHHHHHHHHHhHhhCCeecCccCccceeeCCC-----CCEEECcchhhhhcccCCCc---e
Confidence                     248999999999999999999999999999999999999988     89999999999876543221   1


Q ss_pred             ccccccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCccccccc----cccccccCCCCCCccHH
Q psy4039         406 ADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNT----DYEVNALPQLNTNVPEV  480 (588)
Q Consensus       406 ~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~----~~~~~~~~~~~~~~~~~  480 (588)
                      .....+||+.|||||++.+..      ++.++|||||||++|||+| |+.||.+.....    .......++.|..+|++
T Consensus       243 ~~~~~~gt~~ymAPE~l~~~~------y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~~~~~~~~i~~g~~~~~p~~~~~~  316 (353)
T 4ase_A          243 RKGDARLPLKWMAPETIFDRV------YTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPE  316 (353)
T ss_dssp             EETTEEECGGGCCHHHHHHCC------CCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHHHTCCCCCCTTCCHH
T ss_pred             eeccccccccccCHHHHhcCC------CCCcccEeehHHHHHHHHhCCCCCCCCCCHHHHHHHHHHcCCCCCCCccCCHH
Confidence            122567999999999998876      5678999999999999998 899998743222    12234556778899999


Q ss_pred             HHHHHHHhhhhCCCCCCCHHHHHHHHhhhh
Q psy4039         481 MRRLVAKLLENDPSDRPSAELAATVCQLYL  510 (588)
Q Consensus       481 l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~  510 (588)
                      +.++|.+||+.||++|||++++++.|+.++
T Consensus       317 ~~~li~~c~~~dP~~RPt~~eil~~L~~ll  346 (353)
T 4ase_A          317 MYQTMLDCWHGEPSQRPTFSELVEHLGNLL  346 (353)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCcChhHCcCHHHHHHHHHHHH
Confidence            999999999999999999999999877544

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=100.00  E-value=7.6e-53  Score=433.75  Aligned_cols=266  Identities=21%  Similarity=0.285  Sum_probs=193.0

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||+||+|+++  |+.||||++....   .. .            ..+.+.+|+.+|+.+    +|||
T Consensus         5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~---~~-~------------~~~~~~~E~~il~~l----~Hpn   64 (299)
T 4g31_A            5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPN---RE-L------------AREKVMREVKALAKL----EHPG   64 (299)
T ss_dssp             HHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECS---SH-H------------HHHHHHHHHHHHTTC----CCTT
T ss_pred             hhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccC---CH-H------------HHHHHHHHHHHHHhC----CCCC
Confidence            67999999999999999999987  8899999996422   11 0            123467899999987    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc--CCCCHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC--AQLSMHERVLLFTQLL  350 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~--~~l~~~~~~~i~~ql~  350 (588)
                      ||+++++|.+.....    .+            ........+|+||||| +|+|.+++..+.  ...++..++.|+.||+
T Consensus        65 IV~~~~~~~~~~~~~----~~------------~~~~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~  128 (299)
T 4g31_A           65 IVRYFNAWLEKNTTE----KL------------QPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIA  128 (299)
T ss_dssp             BCCEEEEEEEEC--------------------------CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHH
T ss_pred             CCeEEEEEEecCccc----cc------------cccCCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHH
Confidence            999999998743100    00            0112334689999999 689999998653  2356777899999999


Q ss_pred             HHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccc-------cccccccccCCccccchhHHh
Q psy4039         351 EGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQ-------YSSADIELGGNVALMAPEVAL  423 (588)
Q Consensus       351 ~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~-------~~~~~~~~~GT~~Y~APE~l~  423 (588)
                      +||+|||++|||||||||+|||++.+     +.+||+|||+|+.........       ........+||+.|||||++.
T Consensus       129 ~al~ylH~~~IiHRDlKp~NILl~~~-----~~vKl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~  203 (299)
T 4g31_A          129 EAVEFLHSKGLMHRDLKPSNIFFTMD-----DVVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIH  203 (299)
T ss_dssp             HHHHHHHHTTCCCCCCCGGGEEECTT-----CCEEECCCCCC--------------------------CCCTTSCHHHHT
T ss_pred             HHHHHHHHCcCccccCcHHHeEECCC-----CcEEEccCccceecCCCccccccccccccccccCCcccCccccCHHHHc
Confidence            99999999999999999999999988     899999999998865432111       111223568999999999998


Q ss_pred             cCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccc----ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCH
Q psy4039         424 ATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD----YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSA  499 (588)
Q Consensus       424 ~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~----~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~  499 (588)
                      +..      ++.++|||||||++|||++   ||........    ......|+.+...++.+.+||.+||+.||.+|||+
T Consensus       204 ~~~------y~~~~DiwSlGvilyell~---Pf~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~~L~~dP~~Rps~  274 (299)
T 4g31_A          204 GNS------YSHKVDIFSLGLILFELLY---PFSTQMERVRTLTDVRNLKFPPLFTQKYPCEYVMVQDMLSPSPMERPEA  274 (299)
T ss_dssp             TCC------CCTHHHHHHHHHHHHHHHS---CCSSHHHHHHHHHHHHTTCCCHHHHHHCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             CCC------CCCHHHHHHHHHHHHHHcc---CCCCccHHHHHHHHHhcCCCCCCCcccCHHHHHHHHHHcCCChhHCcCH
Confidence            765      5678999999999999996   8865422111    11122222233455678999999999999999999


Q ss_pred             HHHHHHHhhhhhcCCccccCC
Q psy4039         500 ELAATVCQLYLWAPKHWLYGA  520 (588)
Q Consensus       500 ~e~l~~L~~~~~~~h~w~~~~  520 (588)
                      +|+++         |||++..
T Consensus       275 ~eil~---------h~~~~~~  286 (299)
T 4g31_A          275 INIIE---------NAVFEDL  286 (299)
T ss_dssp             HHHHT---------SGGGCCC
T ss_pred             HHHhc---------CHhhCCC
Confidence            99998         9999743

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=100.00  E-value=7.3e-52  Score=427.46  Aligned_cols=260  Identities=22%  Similarity=0.244  Sum_probs=194.9

Q ss_pred             CCeEEeeeecccCceeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceE
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVV  275 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV  275 (588)
                      ++|.+.+.||+|+||+||+|+++|+.||||++....    .    +          ...+..|+..+..+    +|||||
T Consensus         3 r~i~L~~~iG~G~fG~Vy~~~~~g~~VAvK~l~~~~----~----~----------~~~~e~Ei~~~~~l----~HpNIv   60 (303)
T 3hmm_A            3 RTIVLQESIGKGRFGEVWRGKWRGEEVAVKIFSSRE----E----R----------SWFREAEIYQTVML----RHENIL   60 (303)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEETTEEEEEEEECGGG----H----H----------HHHHHHHHHTSTTC----CCTTBC
T ss_pred             cEEEEEEEEeeCCCeEEEEEEECCEEEEEEEECccc----h----h----------hHHHHHHHHHHhcC----CCCCCC
Confidence            578999999999999999999999999999984311    0    0          11122355555555    899999


Q ss_pred             EEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy4039         276 VMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVT  354 (588)
Q Consensus       276 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~  354 (588)
                      +++++|.+..                        .....+|+||||| +|+|.++|+..  .++++.+..++.|+++||+
T Consensus        61 ~l~g~~~~~~------------------------~~~~~~~lV~Ey~~~gsL~~~l~~~--~l~~~~~~~i~~~ia~gl~  114 (303)
T 3hmm_A           61 GFIAADNKDN------------------------GTWTQLWLVSDYHEHGSLFDYLNRY--TVTVEGMIKLALSTASGLA  114 (303)
T ss_dssp             CEEEEEEEEC------------------------SSSEEEEEEEECCTTCBHHHHHHHC--CBCHHHHHHHHHHHHHHHH
T ss_pred             cEEEEEEecC------------------------CCceEEEEEecCCCCCcHHHHHHhC--CCCHHHHHHHHHHHHHHHH
Confidence            9999998742                        1122589999999 68999999876  7999999999999999999


Q ss_pred             HHHhC--------CceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCC
Q psy4039         355 HLNMH--------RTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP  426 (588)
Q Consensus       355 yLH~~--------~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~  426 (588)
                      |||++        +||||||||+||||+.+     +.+||+|||+|+......... .......+||+.|||||++.+..
T Consensus       115 ylH~~~~~~~~~~~IiHRDlKp~NILl~~~-----~~~Ki~DFGla~~~~~~~~~~-~~~~~~~~GT~~ymAPE~l~~~~  188 (303)
T 3hmm_A          115 HLHMEIVGTQGKPAIAHRDLKSKNILVKKN-----GTCCIADLGLAVRHDSATDTI-DIAPNHRVGTKRYMAPEVLDDSI  188 (303)
T ss_dssp             HHHCCBCSTTCBCCEECSCCCGGGEEECTT-----SCEEECCCTTCEEEETTTTEE-SCC-----CCGGGCCHHHHTTCS
T ss_pred             HHHHhhhhccCCCCEeeccCCcccEEECCC-----CCEEEEeCCCCccccCCCCce-eeecccccccccccCHHHhcccc
Confidence            99987        99999999999999988     899999999998765432211 11223468999999999997653


Q ss_pred             CCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccc-------------------cccccccCCCCCC-----ccHHHH
Q psy4039         427 GLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNT-------------------DYEVNALPQLNTN-----VPEVMR  482 (588)
Q Consensus       427 ~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~-------------------~~~~~~~~~~~~~-----~~~~l~  482 (588)
                      ......++.++|||||||++|||+||.+||.......                   .......|.++..     +++.+.
T Consensus       189 ~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~rp~~p~~~~~~~~~~~l~  268 (303)
T 3hmm_A          189 NMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMA  268 (303)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGGGGSSHHHHHHH
T ss_pred             cccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccccchHHHHHHHHhcccCCCCCCccccchHHHHHHH
Confidence            2111113468999999999999999988764321100                   0011222333322     345789


Q ss_pred             HHHHHhhhhCCCCCCCHHHHHHHHhhh
Q psy4039         483 RLVAKLLENDPSDRPSAELAATVCQLY  509 (588)
Q Consensus       483 ~Li~~~L~~dP~~Rps~~e~l~~L~~~  509 (588)
                      +|+.+||+.||++|||+.++++.|+..
T Consensus       269 ~li~~cl~~dP~~RPt~~ei~~~L~~l  295 (303)
T 3hmm_A          269 KIMRECWYANGAARLTALRIKKTLSQL  295 (303)
T ss_dssp             HHHHTTCCSSGGGSCCHHHHHHHHHHH
T ss_pred             HHHHHHcccCHhHCcCHHHHHHHHHHH
Confidence            999999999999999999999977643

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=100.00  E-value=7.5e-51  Score=429.67  Aligned_cols=252  Identities=22%  Similarity=0.290  Sum_probs=197.5

Q ss_pred             CCeEEeeeecccCceeEEEEEEC-----CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCC
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR-----GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPP  270 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~-----g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~  270 (588)
                      +.|++.+.||+|+||+||+|+++     ++.||||++.+..                   ....+.+|+.+|+.+   .+
T Consensus        21 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~-------------------~~~~~~~E~~~l~~~---~~   78 (361)
T 4f9c_A           21 NVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS-------------------HPIRIAAELQCLTVA---GG   78 (361)
T ss_dssp             GTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS-------------------CHHHHHHHHHHHHHT---CS
T ss_pred             CcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc-------------------CHHHHHHHHHHHHHh---cC
Confidence            77999999999999999999874     6789999985321                   122356799999877   57


Q ss_pred             CCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4039         271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQL  349 (588)
Q Consensus       271 HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql  349 (588)
                      |||||+++++|.+..                            ++|+||||+ +|+|.+++.    .+++.++..++.||
T Consensus        79 h~nIv~l~~~~~~~~----------------------------~~~lvmE~~~g~~L~~~~~----~l~~~~~~~~~~ql  126 (361)
T 4f9c_A           79 QDNVMGVKYCFRKND----------------------------HVVIAMPYLEHESFLDILN----SLSFQEVREYMLNL  126 (361)
T ss_dssp             BTTBCCCSEEEEETT----------------------------EEEEEEECCCCCCHHHHHT----TCCHHHHHHHHHHH
T ss_pred             CCCCceEEEEEEECC----------------------------EEEEEEeCCCcccHHHHHc----CCCHHHHHHHHHHH
Confidence            999999999998732                            599999999 589999883    69999999999999


Q ss_pred             HHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccc-----------------------cccc
Q psy4039         350 LEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQ-----------------------YSSA  406 (588)
Q Consensus       350 ~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~-----------------------~~~~  406 (588)
                      +.||.|||++||+||||||+|||++.+.    +.+||+|||+|+.........                       ....
T Consensus       127 l~al~ylH~~gIiHRDiKPeNiLl~~~~----~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (361)
T 4f9c_A          127 FKALKRIHQFGIVHRDVKPSNFLYNRRL----KKYALVDFGLAQGTHDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQ  202 (361)
T ss_dssp             HHHHHHHHHTTEECSCCSGGGEEEETTT----TEEEECCCTTCEECTTCSCGGGGGC-----------------------
T ss_pred             HHHHHHHHHCCeEeCcCCHHHeEEeCCC----CeEEECcCCCCcccCCcccccccccccccccccccccccccccccccc
Confidence            9999999999999999999999998652    589999999998654321100                       0011


Q ss_pred             cccccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccc----------------------
Q psy4039         407 DIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD----------------------  464 (588)
Q Consensus       407 ~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~----------------------  464 (588)
                      ....+||+.|||||++.+.+.     ++.++||||+||++|||++|+.||........                      
T Consensus       203 ~~~~~GT~~Y~APE~l~~~~~-----y~~~~DiWSlG~il~ell~G~~Pf~~~~~~~~~l~~I~~~~G~~~~~~~~~~~~  277 (361)
T 4f9c_A          203 VAPRAGTPGFRAPEVLTKCPN-----QTTAIDMWSAGVIFLSLLSGRYPFYKASDDLTALAQIMTIRGSRETIQAAKTFG  277 (361)
T ss_dssp             ---CCCCGGGCCHHHHTTCSC-----CCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTT
T ss_pred             ccccccCccccCHHHHcCCCC-----CCCccchhhhHHHHHHHHHCCCCCCCCCCHHHHHHHHHHhcCCccchhhhhhcc
Confidence            234689999999999977542     45779999999999999999999964211000                      


Q ss_pred             --------c---------------------------cccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhh
Q psy4039         465 --------Y---------------------------EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLY  509 (588)
Q Consensus       465 --------~---------------------------~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~  509 (588)
                              .                           ........+..+|++++|||.+||+.||++|||++|+++     
T Consensus       278 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~is~~a~DLl~~lL~~dP~~R~ta~eaL~-----  352 (361)
T 4f9c_A          278 KSILCSKEVPAQDLRKLCERLRGMDSSTPKLTSDIQGHATNLEGWNEVPDEAYDLLDKLLDLNPASRITAEEALL-----  352 (361)
T ss_dssp             EEEEESSCCCCCCHHHHHHHHC----------------------CTTCCHHHHHHHHHHTCSCTTTSCCHHHHHT-----
T ss_pred             ccccccccCcchhhhHHHHhhccccccccccccccccccccccccccCCHHHHHHHHHHCcCChhHCcCHHHHhc-----
Confidence                    0                           000001123568899999999999999999999999999     


Q ss_pred             hhcCCccccC
Q psy4039         510 LWAPKHWLYG  519 (588)
Q Consensus       510 ~~~~h~w~~~  519 (588)
                          ||||++
T Consensus       353 ----Hp~f~~  358 (361)
T 4f9c_A          353 ----HPFFKD  358 (361)
T ss_dssp             ----SGGGTT
T ss_pred             ----CcccCC
Confidence                999974

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=100.00  E-value=8.7e-51  Score=454.08  Aligned_cols=258  Identities=22%  Similarity=0.317  Sum_probs=207.4

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCC
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENL  268 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l  268 (588)
                      ..+++++|++++.||+|+||+||+|+++  |+.||||++.+...           ...   .......+|..++..+ +.
T Consensus       184 ~~~slddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i-----------~~~---~~~~~~~~E~~~l~ll-~~  248 (689)
T 3v5w_A          184 IHLTMNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRI-----------KMK---QGETLALNERIMLSLV-ST  248 (689)
T ss_dssp             CCCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHH-----------HHT---TCHHHHHHHHHHHHHH-SS
T ss_pred             CCCchHHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHc-----------chh---hhHHHHHHHHHHHHHH-hh
Confidence            4567899999999999999999999997  89999999964211           110   0112223343333322 11


Q ss_pred             CCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHH
Q psy4039         269 PPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFT  347 (588)
Q Consensus       269 ~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~  347 (588)
                      ++|||||+++++|++..                            .+|+||||| +|+|.++|...+ .+++..+..++.
T Consensus       249 ~~HP~IV~l~~~f~~~~----------------------------~lylVmEy~~GGdL~~~l~~~~-~l~E~~a~~y~~  299 (689)
T 3v5w_A          249 GDCPFIVCMSYAFHTPD----------------------------KLSFILDLMNGGDLHYHLSQHG-VFSEADMRFYAA  299 (689)
T ss_dssp             SCCTTBCCEEEEEECSS----------------------------EEEEEECCCCSCBHHHHHHHHC-CCCHHHHHHHHH
T ss_pred             CCCCCEeEEEEEEEECC----------------------------EEEEEEecCCCCcHHHHHHhcC-CCCHHHHHHHHH
Confidence            38999999999998742                            599999999 689999998765 899999999999


Q ss_pred             HHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCC
Q psy4039         348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG  427 (588)
Q Consensus       348 ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~  427 (588)
                      ||+.||.|||++|||||||||+||||+.+     +.+||+|||+|+.......       .+.+||+.|||||++..+.+
T Consensus       300 qIl~aL~yLH~~gIiHRDLKPeNILld~~-----G~vKL~DFGlA~~~~~~~~-------~t~~GTp~YmAPEvl~~~~~  367 (689)
T 3v5w_A          300 EIILGLEHMHNRFVVYRDLKPANILLDEH-----GHVRISDLGLACDFSKKKP-------HASVGTHGYMAPEVLQKGVA  367 (689)
T ss_dssp             HHHHHHHHHHTTTEECCCCSGGGEEECTT-----SCEEECCCTTCEECSSCCC-------CSCCSCGGGCCHHHHSTTCC
T ss_pred             HHHHHHHHHHHCCccccCCchHHeEEeCC-----CCEEecccceeeecCCCCC-------CCccCCcCccCHHHHhCCCC
Confidence            99999999999999999999999999988     8999999999987654321       25789999999999964321


Q ss_pred             CccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccc-----ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCC----
Q psy4039         428 LFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD-----YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS----  498 (588)
Q Consensus       428 ~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~-----~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps----  498 (588)
                           ++.++||||+||++|||++|++||.+......     ........+|..+|+++++||.+||+.||.+|++    
T Consensus       368 -----y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~~~~i~~~i~~~~~~~p~~~S~~a~dLI~~lL~~dP~~Rl~~~~~  442 (689)
T 3v5w_A          368 -----YDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGR  442 (689)
T ss_dssp             -----CCTHHHHHHHHHHHHHHHHSSCTTCGGGCCCHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSCGGGCTTCSSS
T ss_pred             -----CCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhhcCCCCCCCccCCHHHHHHHHHHccCCHhHCCCCCCC
Confidence                 55789999999999999999999976432211     1123344677889999999999999999999998    


Q ss_pred             -HHHHHHHHhhhhhcCCcccc
Q psy4039         499 -AELAATVCQLYLWAPKHWLY  518 (588)
Q Consensus       499 -~~e~l~~L~~~~~~~h~w~~  518 (588)
                       ++++++         ||||+
T Consensus       443 ga~ei~~---------HpfF~  454 (689)
T 3v5w_A          443 GAQEVKE---------SPFFR  454 (689)
T ss_dssp             THHHHTT---------SGGGT
T ss_pred             CHHHHhc---------Ccccc
Confidence             789888         99997

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=100.00  E-value=8.1e-50  Score=446.03  Aligned_cols=253  Identities=25%  Similarity=0.350  Sum_probs=210.6

Q ss_pred             ccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCC
Q psy4039         194 KVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPH  271 (588)
Q Consensus       194 ~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~H  271 (588)
                      .+++|++++.||+|+||+||+|.++  |+.||||++......                 ..+.+.+|+.+|+.+    +|
T Consensus       155 il~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~-----------------~~~~~~~Ei~il~~l----~h  213 (573)
T 3uto_A          155 VLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHES-----------------DKETVRKEIQTMSVL----RH  213 (573)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHH-----------------HHHHHHHHHHHHHHT----CC
T ss_pred             CccccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchh-----------------hHHHHHHHHHHHHhC----CC
Confidence            4589999999999999999999997  899999999542100                 123456799999998    99


Q ss_pred             CceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy4039         272 PNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLL  350 (588)
Q Consensus       272 pNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~  350 (588)
                      ||||+++++|.+..                            .+|+||||| +|+|.++|......+++.++..++.||+
T Consensus       214 pnIv~l~~~~~~~~----------------------------~~~iv~E~~~gg~L~~~i~~~~~~l~e~~~~~~~~qi~  265 (573)
T 3uto_A          214 PTLVNLHDAFEDDN----------------------------EMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVC  265 (573)
T ss_dssp             TTBCCEEEEEECSS----------------------------EEEEEEECCCCCBHHHHHTCTTSCEEHHHHHHHHHHHH
T ss_pred             CCCCeEEEEEEECC----------------------------EEEEEEeecCCCcHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            99999999998742                            599999999 6899999976655899999999999999


Q ss_pred             HHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCcc
Q psy4039         351 EGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFS  430 (588)
Q Consensus       351 ~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~  430 (588)
                      .||.|||++||+||||||+|||++.+..   +.+||+|||+|+........      ...+||+.|||||++.+..    
T Consensus       266 ~al~ylH~~~iiHRDlKp~Nill~~~~~---~~vKl~DFG~a~~~~~~~~~------~~~~GT~~y~APEv~~~~~----  332 (573)
T 3uto_A          266 KGLCHMHENNYVHLDLKPENIMFTTKRS---NELKLIDFGLTAHLDPKQSV------KVTTGTAEFAAPEVAEGKP----  332 (573)
T ss_dssp             HHHHHHHHTTEECCCCCGGGEEESSSSC---CCEEECCCSSCEECCTTSEE------EEECSSGGGCCHHHHTTCC----
T ss_pred             HHHHHHHHCCeeeccCChhhccccCCCC---CCEEEeeccceeEccCCCce------eeeEECccccCHHHhCCCC----
Confidence            9999999999999999999999986532   68999999999987553221      2568999999999998775    


Q ss_pred             CCCCCcCchhhHHHHHHHHhcCCCCCccccccccccc------cccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHH
Q psy4039         431 FVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV------NALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAAT  504 (588)
Q Consensus       431 ~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~------~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~  504 (588)
                        ++.++||||+||++|||++|.+||.+......+..      ...+..+..+|+++++||.+||+.||.+|||++|+++
T Consensus       333 --y~~~~DiWSlGvilyeml~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~dli~~~L~~dp~~R~t~~e~l~  410 (573)
T 3uto_A          333 --VGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDWNMDDSAFSGISEDGKDFIRKLLLADPNTRMTIHQALE  410 (573)
T ss_dssp             --BCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHTTCCCCCSGGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             --CCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence              45689999999999999999999987533222111      1112334678999999999999999999999999999


Q ss_pred             HHhhhhhcCCccccC
Q psy4039         505 VCQLYLWAPKHWLYG  519 (588)
Q Consensus       505 ~L~~~~~~~h~w~~~  519 (588)
                               ||||+.
T Consensus       411 ---------Hpw~~~  416 (573)
T 3uto_A          411 ---------HPWLTP  416 (573)
T ss_dssp             ---------STTTSC
T ss_pred             ---------CcCcCC
Confidence                     999983

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=100.00  E-value=1.8e-46  Score=391.31  Aligned_cols=257  Identities=23%  Similarity=0.316  Sum_probs=211.2

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCC
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENL  268 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l  268 (588)
                      ....+++|++.+.||+|+||.||+|.+.  |+.||||++.......               ...+.+.+|+.+++.+   
T Consensus        10 ~~~~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~---------------~~~~~~~~E~~~l~~l---   71 (328)
T 3fe3_A           10 EQPHIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNP---------------TSLQKLFREVRIMKIL---   71 (328)
T ss_dssp             -CCEETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCH---------------HHHHHHHHHHHHHHHC---
T ss_pred             cCCccCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCH---------------HHHHHHHHHHHHHHhC---
Confidence            3445689999999999999999999985  8999999996432111               0123456799999987   


Q ss_pred             CCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHH
Q psy4039         269 PPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFT  347 (588)
Q Consensus       269 ~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~  347 (588)
                       +||||+++++++.+..                            .+|+||||+ +|+|.+++...+ .+++.++..++.
T Consensus        72 -~hpnIv~l~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~-~l~~~~~~~~~~  121 (328)
T 3fe3_A           72 -NHPNIVKLFEVIETEK----------------------------TLYLIMEYASGGEVFDYLVAHG-RMKEKEARSKFR  121 (328)
T ss_dssp             -CCTTBCCEEEEEECSS----------------------------EEEEEECCCTTCBHHHHHHHHC-CCCHHHHHHHHH
T ss_pred             -CCCCEeeEEEEEEECC----------------------------EEEEEEECCCCCcHHHHHHHcC-CCCHHHHHHHHH
Confidence             8999999999987632                            499999999 689999998765 899999999999


Q ss_pred             HHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCC
Q psy4039         348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG  427 (588)
Q Consensus       348 ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~  427 (588)
                      |++.||.|||++||+||||||+|||++.+     +.+||+|||+++....+..      ....+||+.|+|||++.+...
T Consensus       122 qi~~al~~lH~~~ivHrDlkp~NIll~~~-----~~~kl~DFG~a~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~  190 (328)
T 3fe3_A          122 QIVSAVQYCHQKRIVHRDLKAENLLLDAD-----MNIKIADFGFSNEFTVGGK------LDAFCGAPPYAAPELFQGKKY  190 (328)
T ss_dssp             HHHHHHHHHHHTTCCCSCCCGGGEEECTT-----SCEEECSTTCCGGGSSSCG------GGTTSSSGGGCCHHHHHTCCC
T ss_pred             HHHHHHHHHHHCCEeccCCCHHHEEEcCC-----CCEEEeeccCceecCCCCc------cccccCCcceeCcccccCCCc
Confidence            99999999999999999999999999987     8999999999987654322      125679999999999987652


Q ss_pred             CccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccccc--ccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHH
Q psy4039         428 LFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATV  505 (588)
Q Consensus       428 ~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~--~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~  505 (588)
                           .+.++||||+||++|||++|+.||.+........  ......++..+++++.+|+.+||+.||.+|||++++++ 
T Consensus       191 -----~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~~dP~~R~t~~eil~-  264 (328)
T 3fe3_A          191 -----DGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYMSTDCENLLKRFLVLNPIKRGTLEQIMK-  264 (328)
T ss_dssp             -----CSHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHCCSSTTTSCCHHHHTT-
T ss_pred             -----CCchhhhhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHCCCChhHCcCHHHHhc-
Confidence                 2357999999999999999999998753222111  12233456778999999999999999999999999998 


Q ss_pred             HhhhhhcCCccccCC
Q psy4039         506 CQLYLWAPKHWLYGA  520 (588)
Q Consensus       506 L~~~~~~~h~w~~~~  520 (588)
                              |||++..
T Consensus       265 --------h~~~~~~  271 (328)
T 3fe3_A          265 --------DRWINAG  271 (328)
T ss_dssp             --------CTTTTTT
T ss_pred             --------CHhhcCC
Confidence                    9999843

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.8e-46  Score=391.22  Aligned_cols=258  Identities=21%  Similarity=0.283  Sum_probs=212.1

Q ss_pred             cccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCC
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPP  270 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~  270 (588)
                      ..+++|.+.+.||+|+||.||+|.+.  ++.||||++...            ....  ......+.+|+.+++.+    +
T Consensus         6 ~~i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~------------~~~~--~~~~~~~~~E~~~l~~l----~   67 (336)
T 3h4j_B            6 RHIGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQ------------LLKK--SDMHMRVEREISYLKLL----R   67 (336)
T ss_dssp             SEETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHH------------HHHH--TTCSHHHHHHHHHHTTC----C
T ss_pred             cccCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehH------------Hccc--hhHHHHHHHHHHHHHhC----C
Confidence            34589999999999999999999985  889999998521            1111  11234577899999887    8


Q ss_pred             CCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy4039         271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLL  350 (588)
Q Consensus       271 HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~  350 (588)
                      ||||+++++++.+..                            .+++||||++|+|.+++.... .+++.+++.++.|++
T Consensus        68 hpnIv~l~~~~~~~~----------------------------~~~lv~E~~~g~l~~~l~~~~-~l~~~~~~~i~~qi~  118 (336)
T 3h4j_B           68 HPHIIKLYDVITTPT----------------------------DIVMVIEYAGGELFDYIVEKK-RMTEDEGRRFFQQII  118 (336)
T ss_dssp             CTTBCCEEEEEECSS----------------------------EEEEEECCCCEEHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEEEeCC----------------------------EEEEEEECCCCcHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            999999999998632                            489999999999999998765 899999999999999


Q ss_pred             HHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCcc
Q psy4039         351 EGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFS  430 (588)
Q Consensus       351 ~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~  430 (588)
                      .||.|||++||+||||||+|||++.+     +.+||+|||+++....+...      ...+||+.|+|||++.+...   
T Consensus       119 ~aL~~LH~~givH~Dlkp~NIll~~~-----~~~kl~DFG~s~~~~~~~~~------~~~~gt~~y~aPE~~~~~~~---  184 (336)
T 3h4j_B          119 CAIEYCHRHKIVHRDLKPENLLLDDN-----LNVKIADFGLSNIMTDGNFL------KTSCGSPNYAAPEVINGKLY---  184 (336)
T ss_dssp             HHHHHHHHHTCCCCCCSTTTEEECTT-----CCEEECCSSCTBTTTTSBTT------CCCTTSTTTSCGGGSCCSGG---
T ss_pred             HHHHHHHHCCeEecCCchhhEEEcCC-----CCEEEEEeccceeccCCccc------ccccCCcCcCCHHHHcCCCC---
Confidence            99999999999999999999999987     89999999999876543221      24679999999999876541   


Q ss_pred             CCCCCcCchhhHHHHHHHHhcCCCCCccccccccccc--cccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhh
Q psy4039         431 FVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV--NALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQL  508 (588)
Q Consensus       431 ~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~--~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~  508 (588)
                        .+.++|||||||++|||++|+.||.+.........  ......+..+|+++++||.+||+.||.+|||++++++    
T Consensus       185 --~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~~dP~~Rpt~~eil~----  258 (336)
T 3h4j_B          185 --AGPEVDVWSCGIVLYVMLVGRLPFDDEFIPNLFKKVNSCVYVMPDFLSPGAQSLIRRMIVADPMQRITIQEIRR----  258 (336)
T ss_dssp             --GCHHHHHHHHHHHHHHHHHSSCSSBCSSSTTCBCCCCSSCCCCCTTSCHHHHHHHHTTSCSSGGGSCCHHHHTT----
T ss_pred             --CCCccchhHHHHHHHHHHhCCCCCCCccHHHHHHHHHcCCCCCcccCCHHHHHHHHHHcCCChhHCcCHHHHHh----
Confidence              24679999999999999999999987543332221  2233456778999999999999999999999999998    


Q ss_pred             hhhcCCccccCCCC
Q psy4039         509 YLWAPKHWLYGATP  522 (588)
Q Consensus       509 ~~~~~h~w~~~~~~  522 (588)
                           |||++...+
T Consensus       259 -----hp~~~~~~~  267 (336)
T 3h4j_B          259 -----DPWFNVNLP  267 (336)
T ss_dssp             -----CHHHHTTCC
T ss_pred             -----ChhhccCCc
Confidence                 999985433

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=100.00  E-value=2e-45  Score=393.02  Aligned_cols=259  Identities=17%  Similarity=0.270  Sum_probs=208.0

Q ss_pred             ccccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcC
Q psy4039         190 VDDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVEN  267 (588)
Q Consensus       190 ~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~  267 (588)
                      ...+.+++|++.+.||+|+||+||+|+++  ++.||||++.+......              .....+.+|..++..+  
T Consensus        46 ~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~--------------~~~~~~~~E~~il~~~--  109 (396)
T 4dc2_A           46 SSSLGLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDD--------------EDIDWVQTEKHVFEQA--  109 (396)
T ss_dssp             ---CCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC------------------CCHHHHHHHHHHHH--
T ss_pred             ccCCChhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCH--------------HHHHHHHHHHHHHHhc--
Confidence            34567799999999999999999999997  78999999964322111              1233456788888876  


Q ss_pred             CCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHH
Q psy4039         268 LPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLF  346 (588)
Q Consensus       268 l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~  346 (588)
                       .+|||||+++++|.+..                            .+|+||||+ +|+|..++...+ .+++..+..++
T Consensus       110 -~~hp~Iv~l~~~~~~~~----------------------------~~~lV~E~~~gg~L~~~l~~~~-~l~~~~~~~~~  159 (396)
T 4dc2_A          110 -SNHPFLVGLHSCFQTES----------------------------RLFFVIEYVNGGDLMFHMQRQR-KLPEEHARFYS  159 (396)
T ss_dssp             -TTCTTBCCEEEEEECSS----------------------------EEEEEEECCTTCBHHHHHHHHS-SCCHHHHHHHH
T ss_pred             -CCCCCcCeeEEEEEECC----------------------------EEEEEEEcCCCCcHHHHHHHcC-CCCHHHHHHHH
Confidence             58999999999998732                            499999999 579999998765 89999999999


Q ss_pred             HHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCC
Q psy4039         347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP  426 (588)
Q Consensus       347 ~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~  426 (588)
                      .||+.||.|||++||+||||||+|||++.+     +.+||+|||+|+.......     .....+||+.|+|||++.+..
T Consensus       160 ~qi~~aL~~LH~~givHrDLKp~NILl~~~-----g~ikL~DFGla~~~~~~~~-----~~~~~~gt~~Y~aPE~l~~~~  229 (396)
T 4dc2_A          160 AEISLALNYLHERGIIYRDLKLDNVLLDSE-----GHIKLTDYGMCKEGLRPGD-----TTSTFCGTPNYIAPEILRGED  229 (396)
T ss_dssp             HHHHHHHHHHHHTTCBCCCCCGGGEEECTT-----SCEEECCCTTCBCCCCTTC-----CBCCCCBCGGGCCHHHHTTCC
T ss_pred             HHHHHHHHHHHHCCEEeccCCHHHEEECCC-----CCEEEeecceeeecccCCC-----ccccccCCcccCCchhhcCCC
Confidence            999999999999999999999999999988     8999999999986322111     122578999999999998765


Q ss_pred             CCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccc-----------cccccccCCCCCCccHHHHHHHHHhhhhCCCC
Q psy4039         427 GLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNT-----------DYEVNALPQLNTNVPEVMRRLVAKLLENDPSD  495 (588)
Q Consensus       427 ~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~-----------~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~  495 (588)
                            ++.++|||||||++|||++|+.||.......           .........++..+++++++||.+||+.||.+
T Consensus       230 ------~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~lL~~dP~~  303 (396)
T 4dc2_A          230 ------YGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIPRSLSVKAASVLKSFLNKDPKE  303 (396)
T ss_dssp             ------BCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSCTTT
T ss_pred             ------CChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHHHHHHHhccccCCCCcCCHHHHHHHHHHhcCCHhH
Confidence                  4578999999999999999999996421100           01112334567789999999999999999999


Q ss_pred             CCCH------HHHHHHHhhhhhcCCccccC
Q psy4039         496 RPSA------ELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       496 Rps~------~e~l~~L~~~~~~~h~w~~~  519 (588)
                      ||++      +++++         ||||+.
T Consensus       304 R~~~~~~~~~~ei~~---------Hpff~~  324 (396)
T 4dc2_A          304 RLGCHPQTGFADIQG---------HPFFRN  324 (396)
T ss_dssp             STTCSTTTHHHHHHH---------STTTTT
T ss_pred             cCCCCCCCCHHHHhc---------CccccC
Confidence            9985      67777         999963

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=100.00  E-value=1.1e-45  Score=379.22  Aligned_cols=252  Identities=25%  Similarity=0.305  Sum_probs=208.1

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||+||+|.+.  ++.||||++......                 ..+.+.+|+.+++.+    +|||
T Consensus        20 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~-----------------~~~~~~~E~~~l~~l----~hp~   78 (297)
T 3fxz_A           20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQP-----------------KKELIINEILVMREN----KNPN   78 (297)
T ss_dssp             GTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCS-----------------CHHHHHHHHHHHHHC----CCTT
T ss_pred             hceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeeccccc-----------------HHHHHHHHHHHHhcC----CCCC
Confidence            78999999999999999999875  889999998532211                 233466799999987    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++++.+..                            .+++||||+ +|+|.+++...  .+++.++..++.|++.|
T Consensus        79 iv~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~qi~~~  128 (297)
T 3fxz_A           79 IVNYLDSYLVGD----------------------------ELWVVMEYLAGGSLTDVVTET--CMDEGQIAAVCRECLQA  128 (297)
T ss_dssp             BCCEEEEEEETT----------------------------EEEEEEECCTTCBHHHHHHHS--CCCHHHHHHHHHHHHHH
T ss_pred             CCeEeEEEEECC----------------------------EEEEEEECCCCCCHHHHHhhc--CCCHHHHHHHHHHHHHH
Confidence            999999988632                            489999999 68999999876  79999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||++||+||||||+|||++.+     +.+||+|||+++........     .....||+.|+|||++.+..      
T Consensus       129 l~~lH~~~i~H~Dlkp~Nil~~~~-----~~~kl~Dfg~~~~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~------  192 (297)
T 3fxz_A          129 LEFLHSNQVIHRDIKSDNILLGMD-----GSVKLTDFGFCAQITPEQSK-----RSTMVGTPYWMAPEVVTRKA------  192 (297)
T ss_dssp             HHHHHHTTEECCCCSGGGEEECTT-----CCEEECCCTTCEECCSTTCC-----BCCCCSCGGGCCHHHHHCSC------
T ss_pred             HHHHHhCCceeCCCCHHHEEECCC-----CCEEEeeCCCceecCCcccc-----cCCccCCcCccChhhhcCCC------
Confidence            999999999999999999999988     79999999999876543221     12467999999999998765      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcccccccccc-----ccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHh
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE-----VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~-----~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~  507 (588)
                      ++.++|||||||++|||++|..||.+........     .......+..+++.++++|.+||+.||++|||++++++   
T Consensus       193 ~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~---  269 (297)
T 3fxz_A          193 YGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQ---  269 (297)
T ss_dssp             BCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHHCSCCCSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT---
T ss_pred             CCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCCccccCHHHHHHHHHHccCChhHCcCHHHHhh---
Confidence            4578999999999999999999997643211110     11122335678999999999999999999999999998   


Q ss_pred             hhhhcCCccccCCCCC
Q psy4039         508 LYLWAPKHWLYGATPS  523 (588)
Q Consensus       508 ~~~~~~h~w~~~~~~~  523 (588)
                            |||++...+.
T Consensus       270 ------h~~~~~~~~~  279 (297)
T 3fxz_A          270 ------HQFLKIAKPL  279 (297)
T ss_dssp             ------CGGGGGCCCG
T ss_pred             ------ChhhcccCcc
Confidence                  9999855543

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=100.00  E-value=1.4e-45  Score=381.11  Aligned_cols=259  Identities=23%  Similarity=0.269  Sum_probs=205.9

Q ss_pred             cccCCeEEeeeecccCceeEEEEEEC-CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCC
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPH  271 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~-g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~H  271 (588)
                      ...++|++.+.||+|+||+||+|.+. ++.||||++.......               .....+.+|+.+++.+    +|
T Consensus        18 ~l~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~---------------~~~~~~~~E~~~l~~l----~h   78 (311)
T 3niz_A           18 GLMEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDE---------------GIPSTAIREISLLKEL----HH   78 (311)
T ss_dssp             CSSCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC---------------------CHHHHHHHHHHHHHHC----CC
T ss_pred             chHhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccc---------------hhhHHHHHHHHHHHHc----CC
Confidence            34489999999999999999999996 7899999985321110               1123456799999998    89


Q ss_pred             CceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4039         272 PNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLE  351 (588)
Q Consensus       272 pNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~  351 (588)
                      |||+++++++.+..                            .+++||||++|+|.+++......+++..+..++.|++.
T Consensus        79 p~iv~~~~~~~~~~----------------------------~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~  130 (311)
T 3niz_A           79 PNIVSLIDVIHSER----------------------------CLTLVFEFMEKDLKKVLDENKTGLQDSQIKIYLYQLLR  130 (311)
T ss_dssp             TTBCCEEEEECCSS----------------------------CEEEEEECCSEEHHHHHHTCTTCCCHHHHHHHHHHHHH
T ss_pred             CCEeeeeeEEccCC----------------------------EEEEEEcCCCCCHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence            99999999987632                            48999999999999999877667999999999999999


Q ss_pred             HHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccC
Q psy4039         352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF  431 (588)
Q Consensus       352 gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~  431 (588)
                      ||.|||++||+||||||+|||++.+     +.+||+|||+++........     .....||+.|+|||++.+...    
T Consensus       131 ~l~~LH~~~ivH~Dikp~NIl~~~~-----~~~kl~Dfg~a~~~~~~~~~-----~~~~~~t~~y~aPE~~~~~~~----  196 (311)
T 3niz_A          131 GVAHCHQHRILHRDLKPQNLLINSD-----GALKLADFGLARAFGIPVRS-----YTHEVVTLWYRAPDVLMGSKK----  196 (311)
T ss_dssp             HHHHHHHTTEECCCCCGGGEEECTT-----CCEEECCCTTCEETTSCCC--------CCCCCCTTCCHHHHTTCCS----
T ss_pred             HHHHHHHCCcccCCCchHhEEECCC-----CCEEEccCcCceecCCCccc-----ccCCcccCCcCCHHHhcCCCC----
Confidence            9999999999999999999999988     79999999999876432211     124568999999999976431    


Q ss_pred             CCCCcCchhhHHHHHHHHhcCCCCCccccccccccc--------------------------------cccCCCCCCccH
Q psy4039         432 VNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV--------------------------------NALPQLNTNVPE  479 (588)
Q Consensus       432 ~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~--------------------------------~~~~~~~~~~~~  479 (588)
                       ++.++||||+||++|||++|+.||.+.........                                .........+++
T Consensus       197 -~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (311)
T 3niz_A          197 -YSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQLPKIFSILGTPNPREWPQVQELPLWKQRTFQVFEKKPWSSIIPGFCQ  275 (311)
T ss_dssp             -CCTHHHHHHHHHHHHHHHHSSCSCCCSSTTTHHHHHHHHHCCCCTTTSGGGTTSHHHHSCCCCCCCCCCHHHHSTTCCH
T ss_pred             -CCchHHhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHCCCChHHhhhhhccchhhhcccccccCCcHHHhCcccCH
Confidence             45789999999999999999999976322111000                                000111245778


Q ss_pred             HHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccCCCC
Q psy4039         480 VMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGATP  522 (588)
Q Consensus       480 ~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~~~  522 (588)
                      ++.+||.+||+.||.+|||++++++         ||||+...+
T Consensus       276 ~~~~li~~~L~~dP~~Rpt~~ell~---------hp~f~~~~~  309 (311)
T 3niz_A          276 EGIDLLSNMLCFDPNKRISARDAMN---------HPYFKDLDP  309 (311)
T ss_dssp             HHHHHHHHHSCSCTTTSCCHHHHHT---------SGGGTTSCT
T ss_pred             HHHHHHHHHcCCChhHCCCHHHHhc---------CcccccCCc
Confidence            9999999999999999999999999         999986544

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=100.00  E-value=1.3e-45  Score=386.47  Aligned_cols=255  Identities=22%  Similarity=0.311  Sum_probs=208.8

Q ss_pred             cccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCC
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPP  270 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~  270 (588)
                      +.+++|++.+.||+|+||.||+|.+.  ++.||||++.+...           .   .......+.+|+.+++.+    +
T Consensus         2 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~-----------~---~~~~~~~~~~E~~~l~~l----~   63 (337)
T 1o6l_A            2 VTMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVI-----------I---AKDEVAHTVTESRVLQNT----R   63 (337)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHH-----------H---HTTCHHHHHHHHHHHHSC----C
T ss_pred             CChHHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHh-----------h---hhhHHHHHHHHHHHHHhC----C
Confidence            45689999999999999999999997  88999999953110           0   011233456789999887    8


Q ss_pred             CCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4039         271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQL  349 (588)
Q Consensus       271 HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql  349 (588)
                      ||||+++++++.+..                            .+|+||||+ +|+|..++...+ .+++..+..++.||
T Consensus        64 hp~iv~l~~~~~~~~----------------------------~~~lv~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi  114 (337)
T 1o6l_A           64 HPFLTALKYAFQTHD----------------------------RLCFVMEYANGGELFFHLSRER-VFTEERARFYGAEI  114 (337)
T ss_dssp             CTTBCCEEEEEECSS----------------------------EEEEEEECCTTCBHHHHHHHHS-CCCHHHHHHHHHHH
T ss_pred             CCcCcceEEEEEeCC----------------------------EEEEEEeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHH
Confidence            999999999998632                            499999999 579999998764 79999999999999


Q ss_pred             HHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCc
Q psy4039         350 LEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF  429 (588)
Q Consensus       350 ~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~  429 (588)
                      +.||.|||++||+||||||+|||++.+     +.+||+|||+|+.......     .....+||+.|+|||++.+..   
T Consensus       115 ~~aL~~LH~~~ivHrDlkp~NIll~~~-----g~vkL~DFG~a~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~---  181 (337)
T 1o6l_A          115 VSALEYLHSRDVVYRDIKLENLMLDKD-----GHIKITDFGLCKEGISDGA-----TMKTFCGTPEYLAPEVLEDND---  181 (337)
T ss_dssp             HHHHHHHHHTTCBCCCCCGGGEEECTT-----SCEEECCCTTCBCSCCTTC-----CBCCCEECGGGCCGGGGSSSC---
T ss_pred             HHHHHHHHHCCeecCcCCHHHEEECCC-----CCEEEeeccchhhcccCCC-----cccccccChhhCChhhhcCCC---
Confidence            999999999999999999999999988     8999999999986432111     112568999999999997654   


Q ss_pred             cCCCCCcCchhhHHHHHHHHhcCCCCCcccccccccc--ccccCCCCCCccHHHHHHHHHhhhhCCCCCC-----CHHHH
Q psy4039         430 SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVAKLLENDPSDRP-----SAELA  502 (588)
Q Consensus       430 ~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~--~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rp-----s~~e~  502 (588)
                         ++.++|||||||++|||++|..||.+......+.  ......++..+++++++||.+||+.||.+||     +++++
T Consensus       182 ---~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~lL~~dP~~R~g~~~~~~~ei  258 (337)
T 1o6l_A          182 ---YGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEV  258 (337)
T ss_dssp             ---BCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHH
T ss_pred             ---CCchhhcccchhHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHH
Confidence               4578999999999999999999997743222211  1123346678999999999999999999999     89999


Q ss_pred             HHHHhhhhhcCCccccC
Q psy4039         503 ATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       503 l~~L~~~~~~~h~w~~~  519 (588)
                      ++         |||++.
T Consensus       259 ~~---------h~~f~~  266 (337)
T 1o6l_A          259 ME---------HRFFLS  266 (337)
T ss_dssp             HT---------SGGGTT
T ss_pred             Hc---------CCCcCC
Confidence            88         999863

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=100.00  E-value=4.8e-46  Score=392.09  Aligned_cols=260  Identities=18%  Similarity=0.273  Sum_probs=204.1

Q ss_pred             CccccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhc
Q psy4039         189 DVDDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVE  266 (588)
Q Consensus       189 ~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~  266 (588)
                      ....+.+++|++.+.||+|+||+||+|+++  ++.||||++.+..           ...   ........+|..++..+ 
T Consensus        16 ~~~~~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~-----------~~~---~~~~~~~~~E~~il~~~-   80 (353)
T 3txo_A           16 SSNRLGIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDV-----------ILQ---DDDVECTMTEKRILSLA-   80 (353)
T ss_dssp             -------CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHH-----------HHH---HTTHHHHHHHHHHHHHT-
T ss_pred             CcCCCchhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHH-----------hcc---hhHHHHHHHHHHHHHhc-
Confidence            334567799999999999999999999987  7899999995311           000   01233456788888876 


Q ss_pred             CCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHH
Q psy4039         267 NLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLL  345 (588)
Q Consensus       267 ~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i  345 (588)
                        .+||||+++++++.+..                            .+|+||||+ +|+|.+++.... .+++..++.+
T Consensus        81 --~~hp~Iv~l~~~~~~~~----------------------------~~~lv~E~~~gg~L~~~l~~~~-~~~~~~~~~~  129 (353)
T 3txo_A           81 --RNHPFLTQLFCCFQTPD----------------------------RLFFVMEFVNGGDLMFHIQKSR-RFDEARARFY  129 (353)
T ss_dssp             --TTCTTBCCEEEEEECSS----------------------------EEEEEEECCCSCBHHHHHHHHS-SCCHHHHHHH
T ss_pred             --cCCCceeeEEEEEEeCC----------------------------EEEEEEeCCCCCcHHHHHHHcC-CCCHHHHHHH
Confidence              47999999999998732                            499999999 579999998765 8999999999


Q ss_pred             HHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcC
Q psy4039         346 FTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALAT  425 (588)
Q Consensus       346 ~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~  425 (588)
                      +.||+.||.|||++||+||||||+|||++.+     +.+||+|||+|+.......     .....+||+.|+|||++.+.
T Consensus       130 ~~qi~~aL~~LH~~givHrDlkp~NILl~~~-----g~ikL~DFG~a~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~  199 (353)
T 3txo_A          130 AAEIISALMFLHDKGIIYRDLKLDNVLLDHE-----GHCKLADFGMCKEGICNGV-----TTATFCGTPDYIAPEILQEM  199 (353)
T ss_dssp             HHHHHHHHHHHHHTTCBCCCCCGGGEEECTT-----SCEEECCCTTCBCSCC--------------CCGGGCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCcccCCCHHHEEECCC-----CCEEEccccceeecccCCc-----cccccCCCcCeEChhhcCCC
Confidence            9999999999999999999999999999988     8999999999986432211     12256899999999999876


Q ss_pred             CCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccccc--cccCCCCCCccHHHHHHHHHhhhhCCCCCCCH----
Q psy4039         426 PGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV--NALPQLNTNVPEVMRRLVAKLLENDPSDRPSA----  499 (588)
Q Consensus       426 ~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~--~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~----  499 (588)
                      .      ++.++|||||||++|||++|+.||.+......+..  .....++..+++++++||.+||+.||.+||++    
T Consensus       200 ~------~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~lL~~dP~~R~~~~~~~  273 (353)
T 3txo_A          200 L------YGPAVDWWAMGVLLYEMLCGHAPFEAENEDDLFEAILNDEVVYPTWLHEDATGILKSFMTKNPTMRLGSLTQG  273 (353)
T ss_dssp             H------CTTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSGGGSTTSGGGT
T ss_pred             C------cCCccCCCcchHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhhhCHHHccCCcccC
Confidence            4      45789999999999999999999987533322211  22334567789999999999999999999998    


Q ss_pred             --HHHHHHHhhhhhcCCccccC
Q psy4039         500 --ELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       500 --~e~l~~L~~~~~~~h~w~~~  519 (588)
                        +++++         |||++.
T Consensus       274 ~~~~il~---------hp~f~~  286 (353)
T 3txo_A          274 GEHAILR---------HPFFKE  286 (353)
T ss_dssp             CTHHHHT---------SGGGTT
T ss_pred             CHHHHhh---------CCcccC
Confidence              88888         999974

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=100.00  E-value=5.1e-45  Score=372.36  Aligned_cols=256  Identities=21%  Similarity=0.276  Sum_probs=204.7

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      +++|++.+.||+|+||+||+|.+.  ++.||||++........               ....+.+|+.+++.+    +||
T Consensus         1 l~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~---------------~~~~~~~E~~~l~~l----~h~   61 (292)
T 3o0g_A            1 MQKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEG---------------VPSSALREICLLKEL----KHK   61 (292)
T ss_dssp             CCSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTT---------------HHHHHHHHHHHHTTC----CCT
T ss_pred             CCCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCC---------------cchHHHHHHHHHhcC----CCC
Confidence            378999999999999999999996  78999999964332211               123455789999887    899


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      ||+++++++.+..                            .+++||||++|+|.+++......+++..+..++.|++.|
T Consensus        62 ~iv~~~~~~~~~~----------------------------~~~lv~e~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~  113 (292)
T 3o0g_A           62 NIVRLHDVLHSDK----------------------------KLTLVFEFCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKG  113 (292)
T ss_dssp             TBCCEEEEEEETT----------------------------EEEEEEECCSEEHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred             CEeeEEeEEEeCC----------------------------EEEEEEecCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence            9999999998732                            499999999999998888766689999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||++||+||||||+|||++.+     +.+||+|||+++........     .....||+.|+|||++.+...     
T Consensus       114 l~~lH~~~ivH~dikp~Nil~~~~-----~~~kl~Dfg~~~~~~~~~~~-----~~~~~~t~~y~aPE~~~~~~~-----  178 (292)
T 3o0g_A          114 LGFCHSRNVLHRDLKPQNLLINRN-----GELKLANFGLARAFGIPVRC-----YSAEVVTLWYRPPDVLFGAKL-----  178 (292)
T ss_dssp             HHHHHHTTEECCCCSGGGEEECTT-----SCEEECCCTTCEECCSCCSC-----CCSCCSCGGGCCHHHHTTCSC-----
T ss_pred             HHHHHhCCeecCCCCHHHEEEcCC-----CCEEEeecccceecCCcccc-----ccCCccccCCcChHHHcCCCC-----
Confidence            999999999999999999999988     89999999999876432211     124578999999999976542     


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcccccccc----------------cc----------------ccccCCCCCCccHH
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD----------------YE----------------VNALPQLNTNVPEV  480 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~----------------~~----------------~~~~~~~~~~~~~~  480 (588)
                      ++.++|||||||++|||++|..||........                +.                ..........++++
T Consensus       179 ~~~~~DiwslG~il~~l~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (292)
T 3o0g_A          179 YSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNAT  258 (292)
T ss_dssp             CCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCCCTTCCCTTTSTTCCHH
T ss_pred             cCchHHHHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhhhhhcccccccccccccCCcchhhcccccChH
Confidence            45789999999999999998888643211000                00                00111223457899


Q ss_pred             HHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccCCC
Q psy4039         481 MRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGAT  521 (588)
Q Consensus       481 l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~~  521 (588)
                      +++||.+||+.||++|||++|+++         |||++...
T Consensus       259 ~~~li~~~L~~dP~~R~t~~e~l~---------hp~f~~~~  290 (292)
T 3o0g_A          259 GRDLLQNLLKCNPVQRISAEEALQ---------HPYFSDFC  290 (292)
T ss_dssp             HHHHHHHHSCSSGGGSCCHHHHHT---------SGGGTTC-
T ss_pred             HHHHHHHHhccChhhCCCHHHHhc---------CcccccCC
Confidence            999999999999999999999999         99998543

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=100.00  E-value=3.6e-45  Score=372.99  Aligned_cols=254  Identities=22%  Similarity=0.265  Sum_probs=202.4

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC-CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~-g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      +++|++.+.||+|+||+||+|.+. ++.||||++......               ......+.+|+.+++.+    +|||
T Consensus         1 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~---------------~~~~~~~~~E~~~l~~l----~h~~   61 (288)
T 1ob3_A            1 MEKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKED---------------EGIPSTTIREISILKEL----KHSN   61 (288)
T ss_dssp             CCSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGG---------------GCCCHHHHHHHHGGGGC----CCTT
T ss_pred             CccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccc---------------cccchhHHHHHHHHHhc----CCCC
Confidence            378999999999999999999987 889999998532211               11234566799999987    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      |+++++++.+..                            .+++||||++++|.+++......+++..+..++.|+++||
T Consensus        62 iv~~~~~~~~~~----------------------------~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l  113 (288)
T 1ob3_A           62 IVKLYDVIHTKK----------------------------RLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGI  113 (288)
T ss_dssp             BCCEEEEEECSS----------------------------CEEEEEECCSEEHHHHHHTSTTCCCHHHHHHHHHHHHHHH
T ss_pred             EeeeeeEEccCC----------------------------eEEEEEEecCCCHHHHHHhcccCCCHHHHHHHHHHHHHHH
Confidence            999999987632                            3999999999999999987655899999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN  433 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~  433 (588)
                      .|||++||+||||||+|||++.+     +.+||+|||+++.......     ......||+.|+|||++.+...     +
T Consensus       114 ~~lH~~~i~H~dlkp~Nil~~~~-----~~~kl~Dfg~~~~~~~~~~-----~~~~~~~t~~y~aPE~~~~~~~-----~  178 (288)
T 1ob3_A          114 AYCHDRRVLHRDLKPQNLLINRE-----GELKIADFGLARAFGIPVR-----KYTHEIVTLWYRAPDVLMGSKK-----Y  178 (288)
T ss_dssp             HHHHHTTCCCSCCCGGGEEECTT-----SCEEECCTTHHHHHCC--------------CCCTTCCHHHHTTCCS-----C
T ss_pred             HHHHHCCeecCCCCHHHEEEcCC-----CCEEEeECccccccCcccc-----ccccccccccccCchheeCCCC-----C
Confidence            99999999999999999999987     8999999999987543211     1123568999999999975431     4


Q ss_pred             CCcCchhhHHHHHHHHhcCCCCCccccccccc-------------------------------cccccCCCCCCccHHHH
Q psy4039         434 YSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY-------------------------------EVNALPQLNTNVPEVMR  482 (588)
Q Consensus       434 ~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~l~  482 (588)
                      +.++|||||||++|||++|..||.+.......                               ....+......+++++.
T Consensus       179 ~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (288)
T 1ob3_A          179 STTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGI  258 (288)
T ss_dssp             CTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCGGGTCCSCCHHHH
T ss_pred             CcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHCCCChhhchhhhcccccccccccccCccHHHHhhhcCHHHH
Confidence            57899999999999999999999763111000                               00001122346889999


Q ss_pred             HHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccC
Q psy4039         483 RLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       483 ~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~  519 (588)
                      +||.+||+.||++|||++++++         |||++.
T Consensus       259 ~li~~~L~~dP~~Rpt~~e~l~---------hp~f~~  286 (288)
T 1ob3_A          259 DLLSKMLKLDPNQRITAKQALE---------HAYFKE  286 (288)
T ss_dssp             HHHHHHTCSSTTTSCCHHHHHT---------SGGGGC
T ss_pred             HHHHHHcCCCcccCCCHHHHhc---------Ccchhh
Confidence            9999999999999999999999         999974

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=100.00  E-value=3.6e-45  Score=386.52  Aligned_cols=258  Identities=22%  Similarity=0.400  Sum_probs=208.2

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      +.|++++.||+|+||+||+|.+.  |..||||++.........           .....+.+.+|+.+++.+    +|||
T Consensus        12 ~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~-----------~~~~~~~~~~E~~il~~l----~hpn   76 (361)
T 2yab_A           12 DFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASR-----------RGVCREEIEREVSILRQV----LHPN   76 (361)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCS-----------SSBCHHHHHHHHHHHTTC----CCTT
T ss_pred             hceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEcccccccc-----------chhHHHHHHHHHHHHHhC----CCcC
Confidence            78999999999999999999997  889999999754322110           011234567899999987    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |++++++|.+..                            .+++||||+ +|+|.+++.... .+++..+..++.||+.|
T Consensus        77 Iv~l~~~~~~~~----------------------------~~~lv~e~~~gg~L~~~l~~~~-~l~~~~~~~i~~qi~~a  127 (361)
T 2yab_A           77 IITLHDVYENRT----------------------------DVVLILELVSGGELFDFLAQKE-SLSEEEATSFIKQILDG  127 (361)
T ss_dssp             BCCEEEEEECSS----------------------------EEEEEEECCCSCBHHHHHTTCS-CCBHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEEeCC----------------------------EEEEEEEcCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHH
Confidence            999999997632                            499999999 689999997654 79999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||++||+||||||+|||++.+.... ..+||+|||+++....+...      ...+||+.|+|||++.+..      
T Consensus       128 L~~LH~~givHrDlkp~NIll~~~~~~~-~~vkl~DFG~a~~~~~~~~~------~~~~gt~~y~aPE~~~~~~------  194 (361)
T 2yab_A          128 VNYLHTKKIAHFDLKPENIMLLDKNIPI-PHIKLIDFGLAHEIEDGVEF------KNIFGTPEFVAPEIVNYEP------  194 (361)
T ss_dssp             HHHHHHTTEECCCCSGGGEEESCTTSSS-CCEEECCCSSCEECCTTCCC------CCCCSCGGGCCHHHHTTCC------
T ss_pred             HHHHHHCCcccCCCCHHHEEEeCCCCCc-cCEEEEecCCceEcCCCCcc------ccCCCCccEECchHHcCCC------
Confidence            9999999999999999999998762111 37999999999876543221      2467999999999997655      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCccccccccccc------cccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHH
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV------NALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVC  506 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~------~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L  506 (588)
                      ++.++|||||||++|+|++|..||.+......+..      ...+..+..+++++++||.+||..||.+|||++++++  
T Consensus       195 ~~~~~DiwslGvil~~ll~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~e~l~--  272 (361)
T 2yab_A          195 LGLEADMWSIGVITYILLSGASPFLGDTKQETLANITAVSYDFDEEFFSQTSELAKDFIRKLLVKETRKRLTIQEALR--  272 (361)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHTTCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT--
T ss_pred             CCccccHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCchhccCCCHHHHHHHHHHCCCChhHCcCHHHHhc--
Confidence            45789999999999999999999987532222111      0111223578899999999999999999999999999  


Q ss_pred             hhhhhcCCccccC
Q psy4039         507 QLYLWAPKHWLYG  519 (588)
Q Consensus       507 ~~~~~~~h~w~~~  519 (588)
                             |||++.
T Consensus       273 -------hp~~~~  278 (361)
T 2yab_A          273 -------HPWITP  278 (361)
T ss_dssp             -------STTTSC
T ss_pred             -------CcCcCC
Confidence                   999974

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=100.00  E-value=4.1e-45  Score=383.72  Aligned_cols=258  Identities=18%  Similarity=0.273  Sum_probs=207.9

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCC
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENL  268 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l  268 (588)
                      ..+.+++|++.+.||+|+||.||+|+++  ++.||||++.+.......              ....+.+|+.++..+   
T Consensus         4 ~~~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~--------------~~~~~~~E~~~l~~~---   66 (345)
T 3a8x_A            4 DPLGLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDE--------------DIDWVQTEKHVFEQA---   66 (345)
T ss_dssp             CCCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHH--------------HHHHHHHHHHHHHHT---
T ss_pred             CCCchhheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchH--------------HHHHHHHHHHHHHhc---
Confidence            3456789999999999999999999997  889999999653322110              122345688888776   


Q ss_pred             CCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHH
Q psy4039         269 PPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFT  347 (588)
Q Consensus       269 ~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~  347 (588)
                      .+|||||++++++.+..                            .+|+||||+ +|+|.+++.... .+++..++.++.
T Consensus        67 ~~hp~iv~l~~~~~~~~----------------------------~~~lv~e~~~gg~L~~~l~~~~-~l~~~~~~~~~~  117 (345)
T 3a8x_A           67 SNHPFLVGLHSCFQTES----------------------------RLFFVIEYVNGGDLMFHMQRQR-KLPEEHARFYSA  117 (345)
T ss_dssp             TTCTTBCCEEEEEECSS----------------------------EEEEEECCCCSCBHHHHHHHHS-SCCHHHHHHHHH
T ss_pred             CCCCccCeEEEEEEeCC----------------------------EEEEEEeCCCCCcHHHHHHHcC-CCCHHHHHHHHH
Confidence            58999999999998632                            499999999 679999998764 899999999999


Q ss_pred             HHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCC
Q psy4039         348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG  427 (588)
Q Consensus       348 ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~  427 (588)
                      ||+.||.|||++||+||||||+|||++.+     +.+||+|||+|+.......     .....+||+.|+|||++.+.. 
T Consensus       118 qi~~aL~~LH~~~ivHrDlkp~NIll~~~-----g~~kL~DFG~a~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~-  186 (345)
T 3a8x_A          118 EISLALNYLHERGIIYRDLKLDNVLLDSE-----GHIKLTDYGMCKEGLRPGD-----TTSTFCGTPNYIAPEILRGED-  186 (345)
T ss_dssp             HHHHHHHHHHHTTCBCCCCCGGGEEECTT-----SCEEECCGGGCBCSCCTTC-----CBCCCCSCGGGCCHHHHTTCC-
T ss_pred             HHHHHHHHHHHCCceecCCCHHHEEECCC-----CCEEEEeccccccccCCCC-----cccccCCCccccCccccCCCC-
Confidence            99999999999999999999999999987     8999999999986432111     112568999999999998764 


Q ss_pred             CccCCCCCcCchhhHHHHHHHHhcCCCCCccccc---------ccc--ccccccCCCCCCccHHHHHHHHHhhhhCCCCC
Q psy4039         428 LFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSAR---------NTD--YEVNALPQLNTNVPEVMRRLVAKLLENDPSDR  496 (588)
Q Consensus       428 ~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~---------~~~--~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~R  496 (588)
                           ++.++|||||||++|||++|+.||.....         ...  ........++..+++++++||.+||+.||.+|
T Consensus       187 -----~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~lL~~dP~~R  261 (345)
T 3a8x_A          187 -----YGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIPRSLSVKAASVLKSFLNKDPKER  261 (345)
T ss_dssp             -----BCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSTTTS
T ss_pred             -----CChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhcCCHhHC
Confidence                 45789999999999999999999964210         000  01122345677899999999999999999999


Q ss_pred             CCH------HHHHHHHhhhhhcCCccccC
Q psy4039         497 PSA------ELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       497 ps~------~e~l~~L~~~~~~~h~w~~~  519 (588)
                      |++      +++++         |||++.
T Consensus       262 ~~~~~~~~~~~i~~---------hp~f~~  281 (345)
T 3a8x_A          262 LGCHPQTGFADIQG---------HPFFRN  281 (345)
T ss_dssp             TTCCTTTHHHHHHT---------SGGGTT
T ss_pred             CCCCCcCCHHHHhc---------CCccCC
Confidence            995      78777         999963

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=100.00  E-value=2.5e-45  Score=381.00  Aligned_cols=252  Identities=26%  Similarity=0.361  Sum_probs=208.5

Q ss_pred             cccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCC
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPP  270 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~  270 (588)
                      +.+++|++.+.||+|+||.||+|++.  |+.||||++.+..            ...  ....+.+.+|+.+++.+    +
T Consensus         3 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~------------~~~--~~~~~~~~~E~~~l~~l----~   64 (318)
T 1fot_A            3 YSLQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEI------------VVR--LKQVEHTNDERLMLSIV----T   64 (318)
T ss_dssp             CCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHH------------HHH--TTCHHHHHHHHHHHHSC----C
T ss_pred             CChHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHH------------hhh--hhHHHHHHHHHHHHhhC----C
Confidence            45689999999999999999999997  8899999995311            000  11234456788898887    9


Q ss_pred             CCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4039         271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQL  349 (588)
Q Consensus       271 HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql  349 (588)
                      ||||+++++++.+..                            .+|+||||+ +|+|.+++.... .+++..+..++.||
T Consensus        65 hp~Iv~~~~~~~~~~----------------------------~~~lv~e~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi  115 (318)
T 1fot_A           65 HPFIIRMWGTFQDAQ----------------------------QIFMIMDYIEGGELFSLLRKSQ-RFPNPVAKFYAAEV  115 (318)
T ss_dssp             BTTBCCEEEEEECSS----------------------------EEEEEECCCCSCBHHHHHHHTS-SCCHHHHHHHHHHH
T ss_pred             CCCCceEeEEEEeCC----------------------------EEEEEEeCCCCCCHHHHHHHcC-CCCHHHHHHHHHHH
Confidence            999999999998632                            499999999 579999998764 79999999999999


Q ss_pred             HHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCc
Q psy4039         350 LEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF  429 (588)
Q Consensus       350 ~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~  429 (588)
                      +.||.|||++||+||||||+|||++.+     +.+||+|||+++.....        ....+||+.|+|||++.+..   
T Consensus       116 ~~aL~~LH~~~ivHrDlkp~NIll~~~-----g~~kL~Dfg~a~~~~~~--------~~~~~gt~~y~aPE~~~~~~---  179 (318)
T 1fot_A          116 CLALEYLHSKDIIYRDLKPENILLDKN-----GHIKITDFGFAKYVPDV--------TYTLCGTPDYIAPEVVSTKP---  179 (318)
T ss_dssp             HHHHHHHHTTTEECCCCCGGGEEECTT-----SCEEECCCSSCEECSSC--------BCCCCSCTTTCCHHHHTTCC---
T ss_pred             HHHHHHHHHCCccccCCChheEEEcCC-----CCEEEeecCcceecCCc--------cccccCCccccCHhHhcCCC---
Confidence            999999999999999999999999987     89999999999875432        12467999999999997665   


Q ss_pred             cCCCCCcCchhhHHHHHHHHhcCCCCCccccccccccc--cccCCCCCCccHHHHHHHHHhhhhCCCCCC-----CHHHH
Q psy4039         430 SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV--NALPQLNTNVPEVMRRLVAKLLENDPSDRP-----SAELA  502 (588)
Q Consensus       430 ~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~--~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rp-----s~~e~  502 (588)
                         ++.++|||||||++|||++|..||.+......+..  .....++..++++++++|.+||+.||.+||     +++++
T Consensus       180 ---~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~~i  256 (318)
T 1fot_A          180 ---YNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKILNAELRFPPFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDV  256 (318)
T ss_dssp             ---BCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHH
T ss_pred             ---CCcccchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhccCHHHcCCCcCCCHHHH
Confidence               45789999999999999999999977433222211  122346678899999999999999999999     89999


Q ss_pred             HHHHhhhhhcCCccccC
Q psy4039         503 ATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       503 l~~L~~~~~~~h~w~~~  519 (588)
                      ++         |||++.
T Consensus       257 ~~---------hp~f~~  264 (318)
T 1fot_A          257 KN---------HPWFKE  264 (318)
T ss_dssp             HT---------SGGGSS
T ss_pred             hc---------CccccC
Confidence            88         999973

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=100.00  E-value=1.4e-45  Score=387.44  Aligned_cols=258  Identities=22%  Similarity=0.313  Sum_probs=208.0

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCC
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENL  268 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l  268 (588)
                      ..+..++|++.+.||+|+||.||+|+++  ++.||||++.+...           ..   .........|..++..+   
T Consensus        12 ~~~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~-----------~~---~~~~~~~~~E~~il~~~---   74 (345)
T 1xjd_A           12 IKLKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVV-----------LM---DDDVECTMVEKRVLSLA---   74 (345)
T ss_dssp             ----CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHH-----------HH---TTCHHHHHHHHHHHHHH---
T ss_pred             CCCChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHh-----------hh---hhhHHHHHHHHHHHHhc---
Confidence            3566799999999999999999999997  88999999953110           00   11223455688888776   


Q ss_pred             CCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHH
Q psy4039         269 PPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFT  347 (588)
Q Consensus       269 ~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~  347 (588)
                      .+||||+++++++.+..                            .+|+||||+ +|+|.+++.... .+++.++..++.
T Consensus        75 ~~hp~iv~l~~~~~~~~----------------------------~~~lv~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~  125 (345)
T 1xjd_A           75 WEHPFLTHMFCTFQTKE----------------------------NLFFVMEYLNGGDLMYHIQSCH-KFDLSRATFYAA  125 (345)
T ss_dssp             TTCTTBCCEEEEEECSS----------------------------EEEEEEECCTTCBHHHHHHHHS-SCCHHHHHHHHH
T ss_pred             CCCCCCCcEEEEEEeCC----------------------------EEEEEEeCCCCCcHHHHHHHcC-CCCHHHHHHHHH
Confidence            58999999999998732                            499999999 689999998764 899999999999


Q ss_pred             HHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCC
Q psy4039         348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG  427 (588)
Q Consensus       348 ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~  427 (588)
                      ||+.||.|||++||+||||||+|||++.+     +.+||+|||+|+....+..     .....+||+.|+|||++.+.. 
T Consensus       126 qi~~aL~~LH~~~ivHrDlkp~NIll~~~-----g~vkL~DFG~a~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~-  194 (345)
T 1xjd_A          126 EIILGLQFLHSKGIVYRDLKLDNILLDKD-----GHIKIADFGMCKENMLGDA-----KTNTFCGTPDYIAPEILLGQK-  194 (345)
T ss_dssp             HHHHHHHHHHHTTCBCCCCCGGGEEECTT-----SCEEECCCTTCBCCCCTTC-----CBCCCCSCGGGCCHHHHTTCC-
T ss_pred             HHHHHHHHHHHCCeEeCCCChhhEEECCC-----CCEEEeEChhhhhcccCCC-----cccCCCCCcccCChhhhcCCC-
Confidence            99999999999999999999999999988     8999999999986433211     122578999999999998764 


Q ss_pred             CccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccccc--ccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHH-HHHH
Q psy4039         428 LFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE-LAAT  504 (588)
Q Consensus       428 ~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~--~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~-e~l~  504 (588)
                           ++.++|||||||++|||++|..||.+......+.  ....+.++..+++++++||.+||+.||.+||++. ++++
T Consensus       195 -----~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~lL~~dp~~R~~~~~~i~~  269 (345)
T 1xjd_A          195 -----YNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSIRMDNPFYPRWLEKEAKDLLVKLFVREPEKRLGVRGDIRQ  269 (345)
T ss_dssp             -----BCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHSCSSGGGSBTTBSCGGG
T ss_pred             -----CCChhhhHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhCCCCCCcccCHHHHHHHHHHhcCCHhHcCCChHHHHc
Confidence                 4578999999999999999999998753322211  1223456678999999999999999999999998 8777


Q ss_pred             HHhhhhhcCCccccC
Q psy4039         505 VCQLYLWAPKHWLYG  519 (588)
Q Consensus       505 ~L~~~~~~~h~w~~~  519 (588)
                               |||++.
T Consensus       270 ---------hp~f~~  275 (345)
T 1xjd_A          270 ---------HPLFRE  275 (345)
T ss_dssp             ---------SGGGTT
T ss_pred             ---------CccccC
Confidence                     999973

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=100.00  E-value=5.4e-45  Score=375.07  Aligned_cols=264  Identities=23%  Similarity=0.271  Sum_probs=202.6

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      .++|++.+.||+|+||+||+|.+.  ++.||||++.........            ........+|+.+++.+.. ..||
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~------------~~~~~~~~~e~~~l~~l~~-~~h~   74 (308)
T 3g33_A            8 TSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGG------------GGLPISTVREVALLRRLEA-FEHP   74 (308)
T ss_dssp             --CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTS------------SCCCHHHHHHHHHHHHHHH-HCCT
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccc------------cccchhHHHHHHHHHHHhh-cCCC
Confidence            488999999999999999999975  889999998642211110            0112344567777776621 1599


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhc-CCCCHHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERC-AQLSMHERVLLFTQLLE  351 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~-~~l~~~~~~~i~~ql~~  351 (588)
                      ||++++++|.+..                       ......+++|||+++++|.+++.... ..+++.++..++.||+.
T Consensus        75 niv~~~~~~~~~~-----------------------~~~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~  131 (308)
T 3g33_A           75 NVVRLMDVCATSR-----------------------TDREIKVTLVFEHVDQDLRTYLDKAPPPGLPAETIKDLMRQFLR  131 (308)
T ss_dssp             TBCCEEEEEEECC-----------------------SSSEEEEEEEEECCCCBHHHHHHTCCTTCSCHHHHHHHHHHHHH
T ss_pred             CeEEeeeeeeccC-----------------------CCCceeEEEEehhhhcCHHHHHhhccCCCCCHHHHHHHHHHHHH
Confidence            9999999998732                       12233589999999999999998763 24999999999999999


Q ss_pred             HHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccC
Q psy4039         352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF  431 (588)
Q Consensus       352 gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~  431 (588)
                      ||.|||++||+||||||+|||++.+     +.+||+|||+|+.......      .....||+.|+|||++.+..     
T Consensus       132 al~~lH~~~ivH~Dlkp~Nil~~~~-----~~~kl~Dfg~a~~~~~~~~------~~~~~gt~~y~aPE~~~~~~-----  195 (308)
T 3g33_A          132 GLDFLHANCIVHRDLKPENILVTSG-----GTVKLADFGLARIYSYQMA------LTPVVVTLWYRAPEVLLQST-----  195 (308)
T ss_dssp             HHHHHHHTTCCCSCCCTTTEEECTT-----SCEEECSCSCTTTSTTCCC------SGGGGCCCSSCCHHHHHTSC-----
T ss_pred             HHHHHHHCCcccCCCCHHHEEEcCC-----CCEEEeeCccccccCCCcc------cCCccccccccCchHHcCCC-----
Confidence            9999999999999999999999987     7999999999987544221      12467999999999998765     


Q ss_pred             CCCCcCchhhHHHHHHHHhcCCCCCccccccccccc----------ccc-------------------CCCCCCccHHHH
Q psy4039         432 VNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV----------NAL-------------------PQLNTNVPEVMR  482 (588)
Q Consensus       432 ~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~----------~~~-------------------~~~~~~~~~~l~  482 (588)
                       ++.++|||||||++|||++|++||.+.........          ..+                   ......+++++.
T Consensus       196 -~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (308)
T 3g33_A          196 -YATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPPEDDWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGA  274 (308)
T ss_dssp             -CCSTHHHHHHHHHHHHTTTSSCSCCCSSHHHHHHHHHHHHCCCCTTTSCSSCSSCGGGSCCCCCCCHHHHSCSCCHHHH
T ss_pred             -CCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhccchhhccccccCCCCCCcHHHhCccccHHHH
Confidence             45789999999999999999999976321110000          000                   011235789999


Q ss_pred             HHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccCC
Q psy4039         483 RLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGA  520 (588)
Q Consensus       483 ~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~  520 (588)
                      +||.+||+.||++|||++++++         |||++..
T Consensus       275 ~li~~~L~~dP~~R~t~~e~l~---------h~~~~~~  303 (308)
T 3g33_A          275 QLLLEMLTFNPHKRISAFRALQ---------HSYLHKD  303 (308)
T ss_dssp             HHHHHHTCSSTTTSCCHHHHHT---------STTC---
T ss_pred             HHHHHHhcCCCccCCCHHHHhc---------CccccCC
Confidence            9999999999999999999999         9999844

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=100.00  E-value=3e-45  Score=378.32  Aligned_cols=252  Identities=19%  Similarity=0.193  Sum_probs=199.4

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      .++|++.+.||+|+||+||+|.+.  ++.||||++........               .......|+..+..+   .+||
T Consensus        56 ~~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~---------------~~~~~~~e~~~~~~~---~~h~  117 (311)
T 3p1a_A           56 QQSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPK---------------DRARKLAEVGSHEKV---GQHP  117 (311)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHH---------------HHHHHHHHHHHHHHH---CCCT
T ss_pred             hhheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChH---------------HHHHHHHHHHHHHHh---cCCC
Confidence            378999999999999999999997  88999999853221110               111223355555444   5899


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      ||++++++|.+..                            .+++||||++++|.+++...+..+++..++.++.||+.|
T Consensus       118 ~iv~l~~~~~~~~----------------------------~~~lv~e~~~~~L~~~~~~~~~~l~~~~~~~i~~qi~~a  169 (311)
T 3p1a_A          118 CCVRLEQAWEEGG----------------------------ILYLQTELCGPSLQQHCEAWGASLPEAQVWGYLRDTLLA  169 (311)
T ss_dssp             TBCCEEEEEEETT----------------------------EEEEEEECCCCBHHHHHHHHCSCCCHHHHHHHHHHHHHH
T ss_pred             cEEEEEEEEEeCC----------------------------EEEEEEeccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence            9999999998632                            499999999999999998877689999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||+++|+||||||+|||++.+     +.+||+|||+++.......      .....||+.|+|||++.+.       
T Consensus       170 L~~LH~~~ivH~Dikp~NIll~~~-----~~~kl~DFG~a~~~~~~~~------~~~~~gt~~y~aPE~~~~~-------  231 (311)
T 3p1a_A          170 LAHLHSQGLVHLDVKPANIFLGPR-----GRCKLGDFGLLVELGTAGA------GEVQEGDPRYMAPELLQGS-------  231 (311)
T ss_dssp             HHHHHHTTEECCCCSGGGEEECGG-----GCEEECCCTTCEECC------------CCCCCGGGCCGGGGGTC-------
T ss_pred             HHHHHHCCEecCCCCHHHEEECCC-----CCEEEccceeeeecccCCC------CcccCCCccccCHhHhcCC-------
Confidence            999999999999999999999988     8999999999987644221      1245699999999998752       


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcccccccccc-ccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhh
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE-VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLW  511 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~-~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~  511 (588)
                      ++.++|||||||++|||++|..|+.+........ ....+.++..+++++.++|.+||+.||++|||++++++       
T Consensus       232 ~~~~~DiwslG~il~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~-------  304 (311)
T 3p1a_A          232 YGTAADVFSLGLTILEVACNMELPHGGEGWQQLRQGYLPPEFTAGLSSELRSVLVMMLEPDPKLRATAEALLA-------  304 (311)
T ss_dssp             CSTHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHTTTCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT-------
T ss_pred             CCchhhHHHHHHHHHHHHhCCCCCCCccHHHHHhccCCCcccccCCCHHHHHHHHHHcCCChhhCcCHHHHHh-------
Confidence            4578999999999999999977665532211111 11122334578999999999999999999999999999       


Q ss_pred             cCCccccC
Q psy4039         512 APKHWLYG  519 (588)
Q Consensus       512 ~~h~w~~~  519 (588)
                        |||+++
T Consensus       305 --hp~~~~  310 (311)
T 3p1a_A          305 --LPVLRQ  310 (311)
T ss_dssp             --SGGGSC
T ss_pred             --CccccC
Confidence              999964

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=100.00  E-value=7e-45  Score=383.22  Aligned_cols=259  Identities=19%  Similarity=0.261  Sum_probs=206.3

Q ss_pred             ccccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcC
Q psy4039         190 VDDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVEN  267 (588)
Q Consensus       190 ~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~  267 (588)
                      ...+.+++|++.+.||+|+||.||+|.++  ++.||||++.+...           ..   ....+.+.+|..++..+  
T Consensus        14 ~~~~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~-----------~~---~~~~~~~~~E~~~l~~~--   77 (353)
T 2i0e_A           14 RDRMKLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVV-----------IQ---DDDVECTMVEKRVLALP--   77 (353)
T ss_dssp             -----CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHH-----------HH---TTCHHHHHHHHHHHTCT--
T ss_pred             cCCCchHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHh-----------hc---chHHHHHHHHHHHHHhc--
Confidence            34567799999999999999999999997  67899999953110           00   11223455688888765  


Q ss_pred             CCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHH
Q psy4039         268 LPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLF  346 (588)
Q Consensus       268 l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~  346 (588)
                       ..||||+++++++.+..                            .+|+||||+ +|+|.+++...+ .+++..++.++
T Consensus        78 -~~hp~iv~l~~~~~~~~----------------------------~~~lv~E~~~gg~L~~~l~~~~-~~~~~~~~~~~  127 (353)
T 2i0e_A           78 -GKPPFLTQLHSCFQTMD----------------------------RLYFVMEYVNGGDLMYHIQQVG-RFKEPHAVFYA  127 (353)
T ss_dssp             -TCCTTBCCEEEEEECSS----------------------------EEEEEEECCCSCBHHHHHHHHS-SCCHHHHHHHH
T ss_pred             -CCCCEEeeEEEEEEcCC----------------------------EEEEEEeCCCCCcHHHHHHhcC-CCCHHHHHHHH
Confidence             58999999999998632                            499999999 679999998765 79999999999


Q ss_pred             HHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCC
Q psy4039         347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP  426 (588)
Q Consensus       347 ~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~  426 (588)
                      .||+.||.|||++||+||||||+|||++.+     +.+||+|||+|+.......     .....+||+.|+|||++.+..
T Consensus       128 ~qi~~aL~~LH~~givHrDlkp~NIll~~~-----g~vkL~DFG~a~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~  197 (353)
T 2i0e_A          128 AEIAIGLFFLQSKGIIYRDLKLDNVMLDSE-----GHIKIADFGMCKENIWDGV-----TTKTFCGTPDYIAPEIIAYQP  197 (353)
T ss_dssp             HHHHHHHHHHHHTTCBCCCCCGGGEEECTT-----SCEEECCCTTCBCCCCTTC-----CBCCCCSCGGGCCHHHHTTCC
T ss_pred             HHHHHHHHHHHHCCEEeccCCHHHEEEcCC-----CcEEEEeCCcccccccCCc-----ccccccCCccccChhhhcCCC
Confidence            999999999999999999999999999988     8999999999986432111     122568999999999997665


Q ss_pred             CCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccccc--ccccCCCCCCccHHHHHHHHHhhhhCCCCCCC-----H
Q psy4039         427 GLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVAKLLENDPSDRPS-----A  499 (588)
Q Consensus       427 ~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~--~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps-----~  499 (588)
                            ++.++|||||||++|||++|+.||.+......+.  ......++..+++++++||.+||+.||.+||+     +
T Consensus       198 ------~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~  271 (353)
T 2i0e_A          198 ------YGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHNVAYPKSMSKEAVAICKGLMTKHPGKRLGCGPEGE  271 (353)
T ss_dssp             ------BSTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSCTTSCTTCSTTHH
T ss_pred             ------cCCcccccchHHHHHHHHcCCCCCCCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhhcCHHHcCCCCCCCH
Confidence                  4578999999999999999999998753322221  12234566789999999999999999999995     6


Q ss_pred             HHHHHHHhhhhhcCCccccC
Q psy4039         500 ELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       500 ~e~l~~L~~~~~~~h~w~~~  519 (588)
                      +++++         |||++.
T Consensus       272 ~~i~~---------h~~f~~  282 (353)
T 2i0e_A          272 RDIKE---------HAFFRY  282 (353)
T ss_dssp             HHHHT---------SGGGTT
T ss_pred             HHHhc---------CccccC
Confidence            88777         999863

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=100.00  E-value=1.5e-44  Score=392.08  Aligned_cols=253  Identities=22%  Similarity=0.325  Sum_probs=204.8

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||+||+|.+.  |+.||+|++........               ..+.+.+|+.+++.+    +|||
T Consensus        11 ~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~---------------~~~~~~~E~~il~~l----~hpn   71 (444)
T 3soa_A           11 EEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSAR---------------DHQKLEREARICRLL----KHPN   71 (444)
T ss_dssp             HHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHH---------------HHHHHHHHHHHHHHC----CBTT
T ss_pred             CCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHH---------------HHHHHHHHHHHHHhC----CCcC
Confidence            78999999999999999999986  89999999964322110               123466799999987    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      ||++++++.+..                            ..|+||||+ +|+|.+++.... .+++.++..++.||+.|
T Consensus        72 Iv~l~~~~~~~~----------------------------~~~lv~E~~~gg~L~~~i~~~~-~~~e~~~~~i~~qil~a  122 (444)
T 3soa_A           72 IVRLHDSISEEG----------------------------HHYLIFDLVTGGELFEDIVARE-YYSEADASHCIQQILEA  122 (444)
T ss_dssp             BCCEEEEEECSS----------------------------EEEEEECCCBCCBHHHHHHHCS-CCCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEEECC----------------------------EEEEEEEeCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence            999999998632                            489999999 679999998764 79999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||++||+||||||+|||++.+..+  +.+||+|||+|+........     .....||+.|+|||++.+..      
T Consensus       123 L~~lH~~givHrDlKp~NIll~~~~~~--~~vkL~DFG~a~~~~~~~~~-----~~~~~gt~~Y~APE~l~~~~------  189 (444)
T 3soa_A          123 VLHCHQMGVVHRNLKPENLLLASKLKG--AAVKLADFGLAIEVEGEQQA-----WFGFAGTPGYLSPEVLRKDP------  189 (444)
T ss_dssp             HHHHHHTTCBCCCCSSTTEEESBSSTT--CCEEECCCSSCBCCCTTCCB-----CCCSCSCGGGCCHHHHTTCC------
T ss_pred             HHHHHHCCccccCCCHHHEEEeccCCC--CcEEEccCceeEEecCCCce-----eecccCCcccCCHHHhcCCC------
Confidence            999999999999999999999854211  68999999999776543211     12467999999999997664      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCccccccccccc------cccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHH
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV------NALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVC  506 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~------~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L  506 (588)
                      ++.++||||+||++|+|++|.+||.+......+..      ....+.+..+++++++||.+||+.||.+|||++++++  
T Consensus       190 ~~~~~DIwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~e~L~--  267 (444)
T 3soa_A          190 YGKPVDLWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLINKMLTINPSKRITAAEALK--  267 (444)
T ss_dssp             BCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCCCCTTTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH--
T ss_pred             CCCccccHHHHHHHHHHHhCCCCCCCccHHHHHHHHHhCCCCCCccccccCCHHHHHHHHHHcCCChhHCCCHHHHhc--
Confidence            45789999999999999999999977432221111      1112234578999999999999999999999999999  


Q ss_pred             hhhhhcCCcccc
Q psy4039         507 QLYLWAPKHWLY  518 (588)
Q Consensus       507 ~~~~~~~h~w~~  518 (588)
                             |||++
T Consensus       268 -------hp~~~  272 (444)
T 3soa_A          268 -------HPWIS  272 (444)
T ss_dssp             -------SCTTH
T ss_pred             -------Ccccc
Confidence                   99997

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=100.00  E-value=1.3e-44  Score=380.63  Aligned_cols=254  Identities=23%  Similarity=0.347  Sum_probs=210.5

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCC
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENL  268 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l  268 (588)
                      ....+++|++.+.||+|+||.||+|++.  ++.||||++.+...           .   .....+.+.+|+.+++.+   
T Consensus        36 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~-----------~---~~~~~~~~~~E~~~l~~l---   98 (350)
T 1rdq_E           36 NTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKV-----------V---KLKQIEHTLNEKRILQAV---   98 (350)
T ss_dssp             CCCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHH-----------H---HTTCHHHHHHHHHHHTTC---
T ss_pred             cCCCHHHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHh-----------c---cHHHHHHHHHHHHHHHhC---
Confidence            4456799999999999999999999997  88999999953110           0   011234566799999887   


Q ss_pred             CCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHH
Q psy4039         269 PPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFT  347 (588)
Q Consensus       269 ~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~  347 (588)
                       +||||+++++++.+..                            .+|+||||+ +|+|.+++...+ .+++..++.++.
T Consensus        99 -~hp~iv~~~~~~~~~~----------------------------~~~lv~e~~~gg~L~~~l~~~~-~~~~~~~~~~~~  148 (350)
T 1rdq_E           99 -NFPFLVKLEFSFKDNS----------------------------NLYMVMEYVAGGEMFSHLRRIG-RFSEPHARFYAA  148 (350)
T ss_dssp             -CCTTBCCEEEEEECSS----------------------------EEEEEEECCTTCBHHHHHHHHC-CCCHHHHHHHHH
T ss_pred             -CCCCCCeEEEEEEcCC----------------------------EEEEEEcCCCCCcHHHHHHHcC-CCCHHHHHHHHH
Confidence             9999999999998632                            499999999 689999998765 799999999999


Q ss_pred             HHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCC
Q psy4039         348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG  427 (588)
Q Consensus       348 ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~  427 (588)
                      ||+.||.|||++||+||||||+|||++.+     +.+||+|||+++.....        ....+||+.|+|||++.+.. 
T Consensus       149 qi~~aL~~LH~~~ivHrDlkp~NIll~~~-----g~~kL~DFg~a~~~~~~--------~~~~~gt~~y~aPE~~~~~~-  214 (350)
T 1rdq_E          149 QIVLTFEYLHSLDLIYRDLKPENLLIDQQ-----GYIQVTDFGFAKRVKGR--------TWTLCGTPEALAPEIILSKG-  214 (350)
T ss_dssp             HHHHHHHHHHHTTEECCCCSGGGEEECTT-----SCEEECCCTTCEECSSC--------BCCCEECGGGCCHHHHTTCC-
T ss_pred             HHHHHHHHHHHCCcccccCccceEEECCC-----CCEEEcccccceeccCC--------cccccCCccccCHHHhcCCC-
Confidence            99999999999999999999999999987     89999999999875432        12467999999999997664 


Q ss_pred             CccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccccc--ccccCCCCCCccHHHHHHHHHhhhhCCCCCCC-----HH
Q psy4039         428 LFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVAKLLENDPSDRPS-----AE  500 (588)
Q Consensus       428 ~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~--~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps-----~~  500 (588)
                           ++.++|||||||++|||++|..||.+......+.  ......++..++++++++|.+||+.||.+||+     ++
T Consensus       215 -----~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~  289 (350)
T 1rdq_E          215 -----YNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVN  289 (350)
T ss_dssp             -----BCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTCCHHHHHHHHHHSCSCTTTCTTSSTTTTH
T ss_pred             -----CCCcCCEecccHhHhHHhhCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhhcCHHhccCCccCCHH
Confidence                 4578999999999999999999998753322221  11233566789999999999999999999998     89


Q ss_pred             HHHHHHhhhhhcCCccccC
Q psy4039         501 LAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       501 e~l~~L~~~~~~~h~w~~~  519 (588)
                      ++++         |||++.
T Consensus       290 ei~~---------h~~f~~  299 (350)
T 1rdq_E          290 DIKN---------HKWFAT  299 (350)
T ss_dssp             HHHT---------SGGGTT
T ss_pred             HHHh---------CcCcCC
Confidence            9888         999863

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=100.00  E-value=1.1e-44  Score=394.15  Aligned_cols=263  Identities=20%  Similarity=0.203  Sum_probs=191.3

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||+||+|.+.  ++.||||++.....  +.             ...+.+.+|+.+|+.+    +|||
T Consensus        53 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~--~~-------------~~~~~~~~E~~~l~~l----~h~n  113 (458)
T 3rp9_A           53 DRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFE--DL-------------IDCKRILREIAILNRL----NHDH  113 (458)
T ss_dssp             TTEEECCC-------CEEEEEECC--CEEEEEEECSTTS--SH-------------HHHHHHHHHHHHHHHC----CCTT
T ss_pred             CCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhc--CH-------------HHHHHHHHHHHHHHhC----CCCC
Confidence            78999999999999999999887  78999999853211  10             0223466799999998    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      ||++++++....                       ......+|+|||+++++|.+++.... .+++..+..++.||+.||
T Consensus       114 iv~l~~~~~~~~-----------------------~~~~~~~~lv~e~~~~~L~~~~~~~~-~l~~~~~~~~~~qi~~aL  169 (458)
T 3rp9_A          114 VVKVLDIVIPKD-----------------------VEKFDELYVVLEIADSDFKKLFRTPV-YLTELHIKTLLYNLLVGV  169 (458)
T ss_dssp             BCCEEEECCCSC-----------------------TTTCCCEEEEECCCSEEHHHHHHSSC-CCCHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEecCC-----------------------cccCceEEEEEeccccchhhhcccCC-CCCHHHHHHHHHHHHHHH
Confidence            999999986532                       11223599999999999999997653 799999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccc----------------------ccccccccc
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQ----------------------YSSADIELG  411 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~----------------------~~~~~~~~~  411 (588)
                      .|||++||+||||||+|||++.+     +.+||+|||+|+.........                      ........+
T Consensus       170 ~~LH~~~iiHrDlKp~NILl~~~-----~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (458)
T 3rp9_A          170 KYVHSAGILHRDLKPANCLVNQD-----CSVKVCDFGLARTVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHV  244 (458)
T ss_dssp             HHHHHTTCBCCCCCGGGEEECTT-----CCEEECCCTTCBCTTSCTTCCCCCC---------------------------
T ss_pred             HHHHhCCcCCCCCChhhEEECCC-----CCEeecccccchhccCccccccccccCccccccccccccccccccccccCCc
Confidence            99999999999999999999988     899999999998764321100                      001223567


Q ss_pred             CCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc-----------CCCCCcccccc---------cc-------
Q psy4039         412 GNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-----------HDNPFYQSARN---------TD-------  464 (588)
Q Consensus       412 GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-----------G~~Pf~~~~~~---------~~-------  464 (588)
                      ||+.|+|||++.....     ++.++|||||||++|||++           |+++|.+....         ..       
T Consensus       245 gt~~Y~aPE~~~~~~~-----~~~~~DiwSlG~il~elltg~~~~~~~~~~~~p~f~g~~~~~~~~~~~~~~~~~~~~~~  319 (458)
T 3rp9_A          245 VTRWYRAPELILLQEN-----YTEAIDVWSIGCIFAELLNMIKENVAYHADRGPLFPGSSCFPLSPDQKAGNDFKFHTRG  319 (458)
T ss_dssp             CCCTTCCHHHHTTCCC-----CCTHHHHHHHHHHHHHHHTTSTTTCSSGGGCCCSCC--------------------CHH
T ss_pred             ccccccChHHhhCCCC-----CCcHhHHHHHHHHHHHHHHhccccccccccccccCCCCccccccccccccccccccccC
Confidence            9999999998754331     4578999999999999998           56666442100         00       


Q ss_pred             -------------------------------------ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHh
Q psy4039         465 -------------------------------------YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       465 -------------------------------------~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~  507 (588)
                                                           ............+++++.+||.+||+.||.+|||++|+++   
T Consensus       320 ~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~t~~e~L~---  396 (458)
T 3rp9_A          320 NRDQLNVIFNILGTPSEEDIEALEKEDAKRYIRIFPKREGTDLAERFPASSADAIHLLKRMLVFNPNKRITINECLA---  396 (458)
T ss_dssp             HHHHHHHHHHHHCCCCHHHHHTSSCHHHHHHHTTSCCCCCCCGGGGSTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH---
T ss_pred             CHHHHHHHHHHcCCCCHHHHhhcCCHHHHHHHHhcCCCCCCCHHHHCCCCCHHHHHHHHHHhccCccccCCHHHHhc---
Confidence                                                 0000011123456899999999999999999999999999   


Q ss_pred             hhhhcCCccccCC
Q psy4039         508 LYLWAPKHWLYGA  520 (588)
Q Consensus       508 ~~~~~~h~w~~~~  520 (588)
                            |||++..
T Consensus       397 ------Hp~f~~~  403 (458)
T 3rp9_A          397 ------HPFFKEV  403 (458)
T ss_dssp             ------SGGGTTT
T ss_pred             ------CHhhhhc
Confidence                  9999854

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=3.1e-45  Score=380.60  Aligned_cols=250  Identities=21%  Similarity=0.291  Sum_probs=205.2

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||+||+|.+.  +..||+|.+....   .               ....+.+|+.+++.+    +|||
T Consensus         5 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~---~---------------~~~~~~~E~~~l~~l----~hpn   62 (321)
T 1tki_A            5 EKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG---T---------------DQVLVKKEISILNIA----RHRN   62 (321)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT---H---------------HHHHHHHHHHHHHHS----CCTT
T ss_pred             hceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCc---c---------------cHHHHHHHHHHHHhC----CCCC
Confidence            88999999999999999999997  7899999984311   0               123456799999987    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++++.+..                            .+++||||+ +|+|.+++......+++.+++.++.|++.|
T Consensus        63 Iv~~~~~~~~~~----------------------------~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~i~~qi~~a  114 (321)
T 1tki_A           63 ILHLHESFESME----------------------------ELVMIFEFISGLDIFERINTSAFELNEREIVSYVHQVCEA  114 (321)
T ss_dssp             BCCEEEEEEETT----------------------------EEEEEECCCCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHH
T ss_pred             CCeEeEEEecCC----------------------------EEEEEEEeCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence            999999998732                            499999999 579999998765579999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||++||+||||||+|||++.+.+   +.+||+|||+++....+...      ....||+.|+|||++.+..      
T Consensus       115 l~~lH~~givH~Dlkp~NIl~~~~~~---~~~kl~Dfg~a~~~~~~~~~------~~~~gt~~y~aPE~~~~~~------  179 (321)
T 1tki_A          115 LQFLHSHNIGHFDIRPENIIYQTRRS---STIKIIEFGQARQLKPGDNF------RLLFTAPEYYAPEVHQHDV------  179 (321)
T ss_dssp             HHHHHHTTEECCCCCGGGEEESSSSC---CCEEECCCTTCEECCTTCEE------EEEESCGGGSCHHHHTTCE------
T ss_pred             HHHHHHCCCCcCCCCHHHEEEccCCC---CCEEEEECCCCeECCCCCcc------ccccCChhhcCcHHhcCCC------
Confidence            99999999999999999999987322   78999999999876543221      2457999999999997654      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcccccccccccc--ccC----CCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHH
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVN--ALP----QLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVC  506 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~~--~~~----~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L  506 (588)
                      ++.++|||||||++|||++|..||.+..........  ...    ..+..+|+++++||.+||+.||.+|||++++++  
T Consensus       180 ~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~Rpt~~e~l~--  257 (321)
T 1tki_A          180 VSTATDMWSLGTLVYVLLSGINPFLAETNQQIIENIMNAEYTFDEEAFKEISIEAMDFVDRLLVKERKSRMTASEALQ--  257 (321)
T ss_dssp             ECHHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH--
T ss_pred             CCchhhHHHHHHHHHHHHhCCCCCcCCCHHHHHHHHHcCCCCCChhhhccCCHHHHHHHHHHcCCChhHCcCHHHHhc--
Confidence            346899999999999999999999774332211110  011    112468999999999999999999999999999  


Q ss_pred             hhhhhcCCccccC
Q psy4039         507 QLYLWAPKHWLYG  519 (588)
Q Consensus       507 ~~~~~~~h~w~~~  519 (588)
                             |||++.
T Consensus       258 -------hp~~~~  263 (321)
T 1tki_A          258 -------HPWLKQ  263 (321)
T ss_dssp             -------SHHHHS
T ss_pred             -------Chhhcc
Confidence                   999974

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=100.00  E-value=1.1e-44  Score=389.17  Aligned_cols=260  Identities=22%  Similarity=0.312  Sum_probs=209.4

Q ss_pred             ccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCC
Q psy4039         192 DVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLP  269 (588)
Q Consensus       192 ~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~  269 (588)
                      .+..++|++.+.||+|+||+||+|+++  ++.||||++.+..           ..   .......+.+|+.+++.+    
T Consensus        65 ~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~-----------~~---~~~~~~~~~~E~~il~~l----  126 (410)
T 3v8s_A           65 RMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFE-----------MI---KRSDSAFFWEERDIMAFA----  126 (410)
T ss_dssp             SCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHH-----------HH---HTCCCSTHHHHHHHHHHC----
T ss_pred             ccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhh-----------hh---hhHHHHHHHHHHHHHHhC----
Confidence            345589999999999999999999997  7899999995311           11   111344567899999887    


Q ss_pred             CCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHH
Q psy4039         270 PHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQ  348 (588)
Q Consensus       270 ~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~q  348 (588)
                      +|||||+++++|.+..                            .+|+||||+ +|+|.+++...  .+++..+..++.|
T Consensus       127 ~hp~Iv~l~~~~~~~~----------------------------~~~lV~E~~~gg~L~~~l~~~--~~~e~~~~~~~~q  176 (410)
T 3v8s_A          127 NSPWVVQLFYAFQDDR----------------------------YLYMVMEYMPGGDLVNLMSNY--DVPEKWARFYTAE  176 (410)
T ss_dssp             CCTTBCCEEEEEECSS----------------------------EEEEEECCCTTEEHHHHHHHC--CCCHHHHHHHHHH
T ss_pred             CCCCCCeEEEEEEECC----------------------------EEEEEEeCCCCCcHHHHHHcC--CCCHHHHHHHHHH
Confidence            9999999999998732                            499999999 68999999765  7999999999999


Q ss_pred             HHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCC
Q psy4039         349 LLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGL  428 (588)
Q Consensus       349 l~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~  428 (588)
                      |+.||.|||++||+||||||+|||++.+     +.+||+|||+|+.........    ....+||+.|+|||++.+....
T Consensus       177 i~~aL~~LH~~givHrDLKp~NILl~~~-----g~ikL~DFG~a~~~~~~~~~~----~~~~~gt~~Y~APE~l~~~~~~  247 (410)
T 3v8s_A          177 VVLALDAIHSMGFIHRDVKPDNMLLDKS-----GHLKLADFGTCMKMNKEGMVR----CDTAVGTPDYISPEVLKSQGGD  247 (410)
T ss_dssp             HHHHHHHHHHTTEECCCCSGGGEEECTT-----SCEEECCCTTCEECCTTSEEE----CCSCCSCGGGCCHHHHHTTTTT
T ss_pred             HHHHHHHHHHCCeEeccCCHHHeeECCC-----CCEEEeccceeEeeccCCccc----ccCCcCCccccCHHHhhccCCC
Confidence            9999999999999999999999999988     899999999998765432211    1256899999999999865421


Q ss_pred             ccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccccc------cccCCCCCCccHHHHHHHHHhhhhCCCC--CCCHH
Q psy4039         429 FSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV------NALPQLNTNVPEVMRRLVAKLLENDPSD--RPSAE  500 (588)
Q Consensus       429 ~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~------~~~~~~~~~~~~~l~~Li~~~L~~dP~~--Rps~~  500 (588)
                        ..++.++|||||||++|||++|+.||.+......+..      ....+.+..+++++++||.+||+.+|.+  ||+++
T Consensus       248 --~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~s~~~~~li~~lL~~~~~rlgR~~~~  325 (410)
T 3v8s_A          248 --GYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMNHKNSLTFPDDNDISKEAKNLICAFLTDREVRLGRNGVE  325 (410)
T ss_dssp             --CEEETHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHHHCCCCTTCCCCHHHHHHHHHHSSCGGGCTTSSCHH
T ss_pred             --cCCCCcceEecchHHHHHHHhCCCCCCCCChhhHHHHHHhccccccCCCcccccHHHHHHHHHHccChhhhCCCCCHH
Confidence              1134689999999999999999999987533222211      1111223478999999999999988988  99999


Q ss_pred             HHHHHHhhhhhcCCccccC
Q psy4039         501 LAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       501 e~l~~L~~~~~~~h~w~~~  519 (588)
                      ++++         |||++.
T Consensus       326 ei~~---------Hp~f~~  335 (410)
T 3v8s_A          326 EIKR---------HLFFKN  335 (410)
T ss_dssp             HHHT---------SGGGCC
T ss_pred             HHhc---------CccccC
Confidence            9999         999974

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=100.00  E-value=1.1e-44  Score=375.21  Aligned_cols=254  Identities=22%  Similarity=0.273  Sum_probs=190.5

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      .++|++.+.||+|+||.||+|.+.  ++.||||++......                .....+.+|+.+++.+    +||
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~----------------~~~~~~~~E~~~l~~l----~hp   63 (317)
T 2pmi_A            4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEE----------------GTPSTAIREISLMKEL----KHE   63 (317)
T ss_dssp             ---------------CEEEEEECSSSCCEEEEEEEECCSTT----------------CSCHHHHHHHHHHTTC----CBT
T ss_pred             ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeeccccc----------------ccHHHHHHHHHHHHhc----CCC
Confidence            378999999999999999999987  889999999643211                1223456799999887    899


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhc-----CCCCHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERC-----AQLSMHERVLLFT  347 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~-----~~l~~~~~~~i~~  347 (588)
                      |||++++++.+..                            .+++||||++|+|.+++....     ..+++..+..++.
T Consensus        64 ~iv~~~~~~~~~~----------------------------~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~  115 (317)
T 2pmi_A           64 NIVRLYDVIHTEN----------------------------KLTLVFEFMDNDLKKYMDSRTVGNTPRGLELNLVKYFQW  115 (317)
T ss_dssp             TBCCEEEEECCTT----------------------------EEEEEEECCCCBHHHHHHHHHSSSCCCCCCHHHHHHHHH
T ss_pred             CcceEEEEEEECC----------------------------eEEEEEEecCCCHHHHHHhccccccccCCCHHHHHHHHH
Confidence            9999999987632                            499999999999999998652     3599999999999


Q ss_pred             HHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCC
Q psy4039         348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG  427 (588)
Q Consensus       348 ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~  427 (588)
                      ||+.||.|||++||+||||||+|||++.+     +.+||+|||+++........     .....||+.|+|||++.+...
T Consensus       116 qi~~aL~~lH~~~ivH~Dlkp~NIl~~~~-----~~~kl~Dfg~~~~~~~~~~~-----~~~~~~t~~y~aPE~~~~~~~  185 (317)
T 2pmi_A          116 QLLQGLAFCHENKILHRDLKPQNLLINKR-----GQLKLGDFGLARAFGIPVNT-----FSSEVVTLWYRAPDVLMGSRT  185 (317)
T ss_dssp             HHHHHHHHHHHTTEECCCCCGGGEEECTT-----CCEEECCCSSCEETTSCCCC-----CCCCCSCCTTCCHHHHTTCCC
T ss_pred             HHHHHHHHHHHCCeeeCCCChHHeEEcCC-----CCEEECcCccceecCCCccc-----CCCCcccccccCchHhhCCCC
Confidence            99999999999999999999999999987     89999999999876432111     124578999999999975421


Q ss_pred             CccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccccc------------------------------------ccccC
Q psy4039         428 LFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE------------------------------------VNALP  471 (588)
Q Consensus       428 ~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~------------------------------------~~~~~  471 (588)
                           ++.++|||||||++|||++|+.||.+........                                    ....+
T Consensus       186 -----~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (317)
T 2pmi_A          186 -----YSTSIDIWSCGCILAEMITGKPLFPGTNDEEQLKLIFDIMGTPNESLWPSVTKLPKYNPNIQQRPPRDLRQVLQP  260 (317)
T ss_dssp             -----CCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCTTTCGGGGGCTTCCTTCCCCCCCCSHHHHGG
T ss_pred             -----CCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChhHhhhhhhhhhcccccccccchhHHHhhcc
Confidence                 4578999999999999999999997632110000                                    00011


Q ss_pred             CCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccCC
Q psy4039         472 QLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGA  520 (588)
Q Consensus       472 ~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~  520 (588)
                      ..+..+++++.+||.+||+.||++|||++++++         |||++..
T Consensus       261 ~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~---------hp~f~~~  300 (317)
T 2pmi_A          261 HTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALH---------HPWFAEY  300 (317)
T ss_dssp             GCSSCCCHHHHHHHHHHSCSSGGGSCCHHHHTT---------SGGGGGG
T ss_pred             cccccCCHHHHHHHHHHCCCCcccCCCHHHHhC---------Chhhhcc
Confidence            123467889999999999999999999999998         9999843

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=100.00  E-value=2e-44  Score=383.79  Aligned_cols=261  Identities=25%  Similarity=0.323  Sum_probs=211.4

Q ss_pred             CCccccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhh
Q psy4039         188 PDVDDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSV  265 (588)
Q Consensus       188 ~~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l  265 (588)
                      .....+.+++|++.+.||+|+||.||+|.+.  ++.||||++.+..           ..   .....+.+.+|+.+++.+
T Consensus         7 ~~~~~v~~~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~-----------~~---~~~~~~~~~~E~~il~~l   72 (384)
T 4fr4_A            7 DENEDVNFDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQK-----------CV---ERNEVRNVFKELQIMQGL   72 (384)
T ss_dssp             -CCCCCCGGGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHH-----------HH---HTTCHHHHHHHHHHHHTC
T ss_pred             CCCCCCChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhh-----------cc---cHHHHHHHHHHHHHHHhC
Confidence            3456778899999999999999999999987  7889999985311           00   011234566799999987


Q ss_pred             cCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHH
Q psy4039         266 ENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVL  344 (588)
Q Consensus       266 ~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~  344 (588)
                          +|||||+++++|.+..                            .+|+||||+ +|+|..++.... .+++..+..
T Consensus        73 ----~hp~Iv~l~~~~~~~~----------------------------~~~lv~e~~~gg~L~~~l~~~~-~l~~~~~~~  119 (384)
T 4fr4_A           73 ----EHPFLVNLWYSFQDEE----------------------------DMFMVVDLLLGGDLRYHLQQNV-HFKEETVKL  119 (384)
T ss_dssp             ----CCTTBCCEEEEEECSS----------------------------EEEEEECCCTTEEHHHHHHTTC-CCCHHHHHH
T ss_pred             ----CCCCCCcEEEEEEeCC----------------------------EEEEEEecCCCCcHHHHHHhcC-CCCHHHHHH
Confidence                9999999999998732                            499999999 689999998654 799999999


Q ss_pred             HHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhc
Q psy4039         345 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALA  424 (588)
Q Consensus       345 i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~  424 (588)
                      ++.||+.||.|||++||+||||||+|||++.+     +.+||+|||+|+.......      ....+||+.|+|||++..
T Consensus       120 ~~~qi~~aL~~LH~~givHrDlkp~NIll~~~-----g~vkL~DFG~a~~~~~~~~------~~~~~gt~~Y~aPE~~~~  188 (384)
T 4fr4_A          120 FICELVMALDYLQNQRIIHRDMKPDNILLDEH-----GHVHITDFNIAAMLPRETQ------ITTMAGTKPYMAPEMFSS  188 (384)
T ss_dssp             HHHHHHHHHHHHHHTTEECCCCSGGGEEECTT-----SCEEECCCTTCEECCTTCC------BCCCCSCGGGCCGGGTCC
T ss_pred             HHHHHHHHHHHHHHCCceeccCcHHHeEECCC-----CCEEEeccceeeeccCCCc------eeccCCCccccCCeeecc
Confidence            99999999999999999999999999999988     8999999999987654321      125679999999999975


Q ss_pred             CCCCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccc-----ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCC-
Q psy4039         425 TPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD-----YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS-  498 (588)
Q Consensus       425 ~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~-----~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps-  498 (588)
                      ..+.   .++.++|||||||++|||++|+.||........     .........+..+++++.+||.+||+.||.+||+ 
T Consensus       189 ~~~~---~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~p~~~s~~~~~li~~lL~~dP~~R~s~  265 (384)
T 4fr4_A          189 RKGA---GYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSSKEIVHTFETTVVTYPSAWSQEMVSLLKKLLEPNPDQRFSQ  265 (384)
T ss_dssp             CSSC---CBCTTHHHHHHHHHHHHHHHSSCSSCCCTTSCHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHSCSSGGGSCCS
T ss_pred             CCCC---CCCccceeechHHHHHHHHhCCCCCCCCCCccHHHHHHHHhhcccCCCCcCCHHHHHHHHHHhcCCHhHhccc
Confidence            3211   145689999999999999999999975322111     1112334567789999999999999999999998 


Q ss_pred             HHHHHHHHhhhhhcCCcccc
Q psy4039         499 AELAATVCQLYLWAPKHWLY  518 (588)
Q Consensus       499 ~~e~l~~L~~~~~~~h~w~~  518 (588)
                      ++++++         |||++
T Consensus       266 ~~~l~~---------hp~f~  276 (384)
T 4fr4_A          266 LSDVQN---------FPYMN  276 (384)
T ss_dssp             HHHHHT---------SGGGT
T ss_pred             HHHHHc---------Chhhh
Confidence            888877         99986

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=100.00  E-value=1.1e-44  Score=392.25  Aligned_cols=262  Identities=22%  Similarity=0.343  Sum_probs=208.7

Q ss_pred             cccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCC
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPP  270 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~  270 (588)
                      +..++|++.+.||+|+||+||+|+++  ++.||||++.+..           ...   ......+.+|+.++..+    +
T Consensus        71 ~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~-----------~~~---~~~~~~~~~E~~il~~~----~  132 (437)
T 4aw2_A           71 LHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWE-----------MLK---RAETACFREERDVLVNG----D  132 (437)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHH-----------HHH---TTTTCCHHHHHHHHHHS----C
T ss_pred             CChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHH-----------hhh---HHHHHHHHHHHHHHHhC----C
Confidence            34489999999999999999999997  7899999995311           111   11334467899999887    9


Q ss_pred             CCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4039         271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQL  349 (588)
Q Consensus       271 HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql  349 (588)
                      |||||+++++|.+..                            .+|+||||+ +|+|.+++......+++..+..++.||
T Consensus       133 hp~Iv~l~~~~~~~~----------------------------~~~lV~Ey~~gg~L~~~l~~~~~~l~e~~~~~~~~qi  184 (437)
T 4aw2_A          133 SKWITTLHYAFQDDN----------------------------NLYLVMDYYVGGDLLTLLSKFEDRLPEEMARFYLAEM  184 (437)
T ss_dssp             TTTBCCEEEEEECSS----------------------------EEEEEECCCTTCBHHHHHHTTTTCCCHHHHHHHHHHH
T ss_pred             CCCEEEEEEEEeeCC----------------------------EEEEEEecCCCCcHHHHHHHccCCCCHHHHHHHHHHH
Confidence            999999999998732                            499999999 789999998755589999999999999


Q ss_pred             HHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCc
Q psy4039         350 LEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF  429 (588)
Q Consensus       350 ~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~  429 (588)
                      +.||.|||++||+||||||+|||++.+     +.+||+|||+|+.........    ....+||+.|||||++...... 
T Consensus       185 ~~aL~~LH~~giiHrDLKp~NILl~~~-----g~vkL~DFGla~~~~~~~~~~----~~~~~GT~~Y~APE~l~~~~~~-  254 (437)
T 4aw2_A          185 VIAIDSVHQLHYVHRDIKPDNILMDMN-----GHIRLADFGSCLKLMEDGTVQ----SSVAVGTPDYISPEILQAMEGG-  254 (437)
T ss_dssp             HHHHHHHHHTTEECCCCSGGGEEECTT-----SCEEECCCTTCEECCTTSCEE----CCSCCSCGGGCCHHHHHHHHTS-
T ss_pred             HHHHHHHHhCCeEecccCHHHeeEcCC-----CCEEEcchhhhhhcccCCCcc----cccccCCcCeeChHHHhhcccC-
Confidence            999999999999999999999999988     899999999998765432211    1246899999999999731100 


Q ss_pred             cCCCCCcCchhhHHHHHHHHhcCCCCCcccccccccc-------ccccCCCCCCccHHHHHHHHHhhhhCCCC--CCCHH
Q psy4039         430 SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE-------VNALPQLNTNVPEVMRRLVAKLLENDPSD--RPSAE  500 (588)
Q Consensus       430 ~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~-------~~~~~~~~~~~~~~l~~Li~~~L~~dP~~--Rps~~  500 (588)
                      ...++.++|||||||++|||++|+.||.+......+.       ....|.....+++++++||.+||..+|++  ||+++
T Consensus       255 ~~~~~~~~DvwSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~~s~~~~dLi~~lL~~~~~r~~r~~~~  334 (437)
T 4aw2_A          255 KGRYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHKERFQFPTQVTDVSENAKDLIRRLICSREHRLGQNGIE  334 (437)
T ss_dssp             CCEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHHHCCCCSSCCCSCHHHHHHHHTTSSCGGGCTTTTTTH
T ss_pred             CCCCCCcCeeHHHHHHHHHHHhCCCCCCCCChhHHHHhhhhccccccCCcccccCCHHHHHHHHHHhcccccccCCCCHH
Confidence            0014578999999999999999999998753222211       11233334568999999999999888887  99999


Q ss_pred             HHHHHHhhhhhcCCccccC
Q psy4039         501 LAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       501 e~l~~L~~~~~~~h~w~~~  519 (588)
                      ++++         |||++.
T Consensus       335 eil~---------Hpff~~  344 (437)
T 4aw2_A          335 DFKK---------HPFFSG  344 (437)
T ss_dssp             HHHT---------SGGGTT
T ss_pred             HHhC---------CCccCC
Confidence            9998         999973

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=100.00  E-value=1.7e-44  Score=372.94  Aligned_cols=261  Identities=24%  Similarity=0.306  Sum_probs=203.3

Q ss_pred             CCccccccCCeEEeeeecccCceeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcC
Q psy4039         188 PDVDDVKVDDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVEN  267 (588)
Q Consensus       188 ~~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~  267 (588)
                      ....++..++|++.+.||+|+||+||+|.+.+..||||++.......   .            ..+.+.+|+.+++.+  
T Consensus        29 ~~~~~i~~~~y~i~~~lG~G~~g~V~~~~~~~~~vavK~~~~~~~~~---~------------~~~~~~~E~~~l~~l--   91 (309)
T 3p86_A           29 GDDMDIPWCDLNIKEKIGAGSFGTVHRAEWHGSDVAVKILMEQDFHA---E------------RVNEFLREVAIMKRL--   91 (309)
T ss_dssp             ---CBCCGGGEEEEEEEEECSSEEEEEEEETTEEEEEEEECCCCCSH---H------------HHHHHHHHHHHHHHC--
T ss_pred             cccccCChhHceeeeEeecCCCeEEEEEEECCCcEEEEEecCCCCCH---H------------HHHHHHHHHHHHHhC--
Confidence            45567778999999999999999999999999999999985432211   0            123456799999998  


Q ss_pred             CCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc--CCCCHHHHHH
Q psy4039         268 LPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC--AQLSMHERVL  344 (588)
Q Consensus       268 l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~--~~l~~~~~~~  344 (588)
                        +||||+++++++.+..                            .+++||||+ +|+|.+++....  ..+++..++.
T Consensus        92 --~hp~iv~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~  141 (309)
T 3p86_A           92 --RHPNIVLFMGAVTQPP----------------------------NLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLS  141 (309)
T ss_dssp             --CCTTBCCEEEEECSTT----------------------------CCEEEEECCTTCBHHHHHHSTTHHHHSCHHHHHH
T ss_pred             --CCCCEeeEEEEEEECC----------------------------ceEEEEecCCCCcHHHHHhhcCCCCCCCHHHHHH
Confidence              8999999999987632                            389999999 579999998652  2499999999


Q ss_pred             HHHHHHHHHHHHHhCC--ceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHH
Q psy4039         345 LFTQLLEGVTHLNMHR--TAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVA  422 (588)
Q Consensus       345 i~~ql~~gL~yLH~~~--IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l  422 (588)
                      ++.|++.||.|||++|  |+||||||+|||++.+     +.+||+|||+++.......     ......||+.|+|||++
T Consensus       142 i~~qi~~aL~~LH~~~~~ivH~Dikp~NIll~~~-----~~~kL~Dfg~a~~~~~~~~-----~~~~~~gt~~y~aPE~~  211 (309)
T 3p86_A          142 MAYDVAKGMNYLHNRNPPIVHRNLKSPNLLVDKK-----YTVKVCDFGLSRLKASTFL-----SSKSAAGTPEWMAPEVL  211 (309)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCCTTCCGGGEEECTT-----CCEEECCCC----------------------CCTTSCHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCEECCCCChhhEEEeCC-----CcEEECCCCCCcccccccc-----ccccCCCCccccChhhh
Confidence            9999999999999999  9999999999999987     8999999999976443211     11246799999999999


Q ss_pred             hcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccccc----ccccCCCCCCccHHHHHHHHHhhhhCCCCCCC
Q psy4039         423 LATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE----VNALPQLNTNVPEVMRRLVAKLLENDPSDRPS  498 (588)
Q Consensus       423 ~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~----~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps  498 (588)
                      .+..      ++.++|||||||++|||++|+.||.+........    ......++..+++++.++|.+||+.||.+|||
T Consensus       212 ~~~~------~~~~~DiwslG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps  285 (309)
T 3p86_A          212 RDEP------SNEKSDVYSFGVILWELATLQQPWGNLNPAQVVAAVGFKCKRLEIPRNLNPQVAAIIEGCWTNEPWKRPS  285 (309)
T ss_dssp             TTCC------CCTTHHHHHHHHHHHHHHHCCCTTTTSCHHHHHHHHHHSCCCCCCCTTSCHHHHHHHHHHTCSSGGGSCC
T ss_pred             cCCC------CCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCCCccCCHHHHHHHHHHccCChhhCcC
Confidence            8765      4578999999999999999999997643222111    22344567789999999999999999999999


Q ss_pred             HHHHHHHHhhhhh
Q psy4039         499 AELAATVCQLYLW  511 (588)
Q Consensus       499 ~~e~l~~L~~~~~  511 (588)
                      ++++++.|+.++.
T Consensus       286 ~~~ll~~L~~~~~  298 (309)
T 3p86_A          286 FATIMDLLRPLIK  298 (309)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998876543

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.2e-44  Score=378.92  Aligned_cols=264  Identities=21%  Similarity=0.222  Sum_probs=202.7

Q ss_pred             cccCCeEEeeeecccCceeEEEEEEC-CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCC
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPH  271 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~-g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~H  271 (588)
                      +.-+.|++.+.||+|+||.||+|.+. ++.||||++.......   .            ....+.+|+.+++.+    +|
T Consensus         6 ~~~~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~---~------------~~~~~~~E~~~l~~l----~~   66 (343)
T 3dbq_A            6 VKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADN---Q------------TLDSYRNEIAYLNKL----QQ   66 (343)
T ss_dssp             SSSCEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCH---H------------HHHHHHHHHHHHHHH----TT
T ss_pred             eecCEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccch---H------------HHHHHHHHHHHHHhh----hh
Confidence            44477999999999999999999886 7889999986432111   0            123456799999998    55


Q ss_pred             --CceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4039         272 --PNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQL  349 (588)
Q Consensus       272 --pNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql  349 (588)
                        |||+++++++.+..                            .+++|||+.+++|.+++.... .+++.++..++.||
T Consensus        67 ~~~~iv~~~~~~~~~~----------------------------~~~lv~e~~~~~L~~~l~~~~-~~~~~~~~~i~~qi  117 (343)
T 3dbq_A           67 HSDKIIRLYDYEITDQ----------------------------YIYMVMECGNIDLNSWLKKKK-SIDPWERKSYWKNM  117 (343)
T ss_dssp             TCTTBCCEEEEEECSS----------------------------EEEEEECCCSEEHHHHHHHSC-CCCHHHHHHHHHHH
T ss_pred             cCCceEEEeeeEeeCC----------------------------EEEEEEeCCCCCHHHHHHhcC-CCCHHHHHHHHHHH
Confidence              99999999987632                            499999977899999998764 89999999999999


Q ss_pred             HHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCc
Q psy4039         350 LEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF  429 (588)
Q Consensus       350 ~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~  429 (588)
                      +.||.|||++||+||||||+|||+++      +.+||+|||+++.........   .....+||+.|+|||++.+.....
T Consensus       118 ~~al~~lH~~~iiHrDikp~NIll~~------~~~kl~DFG~a~~~~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~  188 (343)
T 3dbq_A          118 LEAVHTIHQHGIVHSDLKPANFLIVD------GMLKLIDFGIANQMQPDTTSV---VKDSQVGTVNYMPPEAIKDMSSSR  188 (343)
T ss_dssp             HHHHHHHHHTTCCCCCCCGGGEEEET------TEEEECCCSSSCCC---------------CCCCSSCCHHHHHHCC---
T ss_pred             HHHHHHHHhCCeecCCCCcceEEEEC------CcEEEeecccccccCcccccc---cCCCCcCCcCcCCHHHHhhccccc
Confidence            99999999999999999999999973      579999999998765432111   112467999999999997521100


Q ss_pred             -----cCCCCCcCchhhHHHHHHHHhcCCCCCccccccc-----cccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCH
Q psy4039         430 -----SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNT-----DYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSA  499 (588)
Q Consensus       430 -----~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~-----~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~  499 (588)
                           ...++.++|||||||++|||++|+.||.......     .........++...++++.+|+.+||+.||.+|||+
T Consensus       189 ~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dp~~Rpt~  268 (343)
T 3dbq_A          189 ENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISI  268 (343)
T ss_dssp             --------CCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHCTTSCCCCCCCSCHHHHHHHHHHTCSSTTTSCCH
T ss_pred             cccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhhHHHHHHHHhcCCcccCCcccCCHHHHHHHHHHcCCChhHCCCH
Confidence                 0124568999999999999999999997632211     111122334566778899999999999999999999


Q ss_pred             HHHHHHHhhhhhcCCccccCCCC
Q psy4039         500 ELAATVCQLYLWAPKHWLYGATP  522 (588)
Q Consensus       500 ~e~l~~L~~~~~~~h~w~~~~~~  522 (588)
                      +++++         |||++....
T Consensus       269 ~e~l~---------hp~~~~~~~  282 (343)
T 3dbq_A          269 PELLA---------HPYVQIQTH  282 (343)
T ss_dssp             HHHHT---------SHHHHSCCC
T ss_pred             HHHHh---------CccccccCC
Confidence            99999         999984433

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=100.00  E-value=1.1e-44  Score=380.96  Aligned_cols=257  Identities=22%  Similarity=0.284  Sum_probs=204.3

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      +.|++.+.||+|+||+||+|.+.  ++.||||++....            .........+.+.+|+.+++.+    +|||
T Consensus        24 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~------------~~~~~~~~~~~~~~E~~~l~~l----~hpn   87 (351)
T 3c0i_A           24 DVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAK------------FTSSPGLSTEDLKREASICHML----KHPH   87 (351)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHH------------HHTSSSCCHHHHHHHHHHHHHC----CCTT
T ss_pred             cceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhh------------ccccccchHHHHHHHHHHHHhC----CCCC
Confidence            67999999999999999999987  8899999985311            0111112345577899999987    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh---cCCCCHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER---CAQLSMHERVLLFTQL  349 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~---~~~l~~~~~~~i~~ql  349 (588)
                      ||++++++.+..                            .+|+||||+ +|+|.+++...   +..+++..+..++.||
T Consensus        88 Iv~~~~~~~~~~----------------------------~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi  139 (351)
T 3c0i_A           88 IVELLETYSSDG----------------------------MLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQI  139 (351)
T ss_dssp             BCCEEEEEEETT----------------------------EEEEEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             CCcEEEEEEeCC----------------------------EEEEEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHH
Confidence            999999998732                            499999999 58999888754   2358999999999999


Q ss_pred             HHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCc
Q psy4039         350 LEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF  429 (588)
Q Consensus       350 ~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~  429 (588)
                      +.||.|||++||+||||||+|||++.+...  ..+||+|||+++........     ....+||+.|+|||++.+..   
T Consensus       140 ~~al~~lH~~~ivHrDlkp~NIl~~~~~~~--~~vkl~Dfg~a~~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~---  209 (351)
T 3c0i_A          140 LEALRYCHDNNIIHRDVKPHCVLLASKENS--APVKLGGFGVAIQLGESGLV-----AGGRVGTPHFMAPEVVKREP---  209 (351)
T ss_dssp             HHHHHHHHHTTEECSCCSGGGEEECSSSTT--CCEEECCCTTCEECCTTSCB-----CCCCCSCGGGCCHHHHTTCC---
T ss_pred             HHHHHHHHHCCceeccCChHHeEEecCCCC--CcEEEecCcceeEecCCCee-----ecCCcCCcCccCHHHHcCCC---
Confidence            999999999999999999999999865221  46999999999876543211     12457999999999997664   


Q ss_pred             cCCCCCcCchhhHHHHHHHHhcCCCCCcccccccc--cccc---ccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHH
Q psy4039         430 SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD--YEVN---ALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAAT  504 (588)
Q Consensus       430 ~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~--~~~~---~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~  504 (588)
                         ++.++|||||||++|||++|..||.+......  ....   ..+..+..+++++++||.+||+.||++|||+.++++
T Consensus       210 ---~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~  286 (351)
T 3c0i_A          210 ---YGKPVDVWGCGVILFILLSGCLPFYGTKERLFEGIIKGKYKMNPRQWSHISESAKDLVRRMLMLDPAERITVYEALN  286 (351)
T ss_dssp             ---BCTHHHHHHHHHHHHHHHHSSCSSCSSHHHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             ---CCchHhhHHHHHHHHHHHHCCCCCCCcHHHHHHHHHcCCCCCCccccccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence               45789999999999999999999977422100  0000   111122468899999999999999999999999999


Q ss_pred             HHhhhhhcCCcccc
Q psy4039         505 VCQLYLWAPKHWLY  518 (588)
Q Consensus       505 ~L~~~~~~~h~w~~  518 (588)
                               |||++
T Consensus       287 ---------hp~~~  291 (351)
T 3c0i_A          287 ---------HPWLK  291 (351)
T ss_dssp             ---------SHHHH
T ss_pred             ---------Chhhc
Confidence                     99997

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=100.00  E-value=2.7e-44  Score=374.14  Aligned_cols=259  Identities=19%  Similarity=0.337  Sum_probs=201.6

Q ss_pred             ccccccCCeEEeeeecccCceeEEEEEE-----CCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhh
Q psy4039         190 VDDVKVDDIQIGKFIAKGTNAVVYEATF-----RGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNS  264 (588)
Q Consensus       190 ~~~i~~~~~~~~~~IG~G~fG~Vy~a~~-----~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~  264 (588)
                      ...+..++|++.+.||+|+||.||+|.+     .++.||||++.......+.             .....+.+|+.+++.
T Consensus        11 ~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~-------------~~~~~~~~E~~~l~~   77 (327)
T 3a62_A           11 PEKIRPECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNA-------------KDTAHTKAERNILEE   77 (327)
T ss_dssp             --CCCGGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC---------------------------HHHHHHH
T ss_pred             CCCCCHHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhh-------------hHHHHHHHHHHHHHh
Confidence            3456679999999999999999999997     3789999999643221110             122345679999998


Q ss_pred             hcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHH
Q psy4039         265 VENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERV  343 (588)
Q Consensus       265 l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~  343 (588)
                      +    +||||+++++++.+..                            .+|+||||+ +|+|.+++...+ .+++..+.
T Consensus        78 l----~hp~iv~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~  124 (327)
T 3a62_A           78 V----KHPFIVDLIYAFQTGG----------------------------KLYLILEYLSGGELFMQLEREG-IFMEDTAC  124 (327)
T ss_dssp             C----CCTTBCCEEEEEECSS----------------------------CEEEEEECCTTEEHHHHHHHHS-SCCHHHHH
T ss_pred             C----CCCCccceeEEEEcCC----------------------------EEEEEEeCCCCCcHHHHHHhCC-CCCHHHHH
Confidence            7    8999999999997632                            399999999 589999998764 79999999


Q ss_pred             HHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHh
Q psy4039         344 LLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVAL  423 (588)
Q Consensus       344 ~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~  423 (588)
                      .++.||+.||.|||++||+||||||+|||++.+     +.+||+|||+++.......     .....+||+.|+|||++.
T Consensus       125 ~~~~qi~~al~~lH~~~ivH~Dlkp~Nill~~~-----~~~kl~Dfg~~~~~~~~~~-----~~~~~~gt~~y~aPE~~~  194 (327)
T 3a62_A          125 FYLAEISMALGHLHQKGIIYRDLKPENIMLNHQ-----GHVKLTDFGLCKESIHDGT-----VTHTFCGTIEYMAPEILM  194 (327)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCCCCTTTEEECTT-----SCEEECCCSCC---------------CTTSSCCTTSCHHHHT
T ss_pred             HHHHHHHHHHHHHHhCCEEcccCCHHHeEECCC-----CcEEEEeCCcccccccCCc-----cccccCCCcCccCHhhCc
Confidence            999999999999999999999999999999987     8999999999976433211     112467999999999997


Q ss_pred             cCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccccc--ccccCCCCCCccHHHHHHHHHhhhhCCCCCC----
Q psy4039         424 ATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVAKLLENDPSDRP----  497 (588)
Q Consensus       424 ~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~--~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rp----  497 (588)
                      +..      ++.++|||||||++|||++|+.||.+........  ......++..+++++++||.+||+.||.+||    
T Consensus       195 ~~~------~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~~L~~dp~~R~~~~~  268 (327)
T 3a62_A          195 RSG------HNRAVDWWSLGALMYDMLTGAPPFTGENRKKTIDKILKCKLNLPPYLTQEARDLLKKLLKRNAASRLGAGP  268 (327)
T ss_dssp             TSC------CCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCCCCTTSCHHHHHHHHHHSCSCGGGSTTSST
T ss_pred             CCC------CCCcccchhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHhcCHhhccCCCC
Confidence            654      4578999999999999999999998743222211  1123346678899999999999999999999    


Q ss_pred             -CHHHHHHHHhhhhhcCCccccC
Q psy4039         498 -SAELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       498 -s~~e~l~~L~~~~~~~h~w~~~  519 (588)
                       +++++++         |||++.
T Consensus       269 ~~~~e~l~---------hp~f~~  282 (327)
T 3a62_A          269 GDAGEVQA---------HPFFRH  282 (327)
T ss_dssp             TTHHHHHH---------SGGGSS
T ss_pred             CCHHHHHc---------CCcccC
Confidence             7889888         999974

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=100.00  E-value=2.3e-44  Score=374.62  Aligned_cols=259  Identities=23%  Similarity=0.385  Sum_probs=207.7

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      +.|++.+.||+|+||.||+|.+.  +..||||++........           ......+.+.+|+.+++.+    +|||
T Consensus        11 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~-----------~~~~~~~~~~~E~~~l~~l----~hp~   75 (326)
T 2y0a_A           11 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSS-----------RRGVSREDIEREVSILKEI----QHPN   75 (326)
T ss_dssp             HHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTC-----------SSSBCHHHHHHHHHHHHHC----CCTT
T ss_pred             cceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccc-----------cchhhHHHHHHHHHHHHhC----CCCC
Confidence            77999999999999999999997  88999999965332211           0011234567899999998    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++++.+..                            .+++||||+ +|+|.+++.... .+++.+++.++.||+.|
T Consensus        76 iv~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~a  126 (326)
T 2y0a_A           76 VITLHEVYENKT----------------------------DVILILELVAGGELFDFLAEKE-SLTEEEATEFLKQILNG  126 (326)
T ss_dssp             BCCEEEEEECSS----------------------------EEEEEEECCCSCBHHHHHTTSS-CCBHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEEeCC----------------------------EEEEEEEcCCCCCHHHHHHhcC-CcCHHHHHHHHHHHHHH
Confidence            999999987632                            499999999 689999997653 79999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||++||+||||||+|||++.+.... ..+||+|||+++....+...      ....||+.|+|||++.+..      
T Consensus       127 l~~lH~~~ivH~Dlkp~NIll~~~~~~~-~~~kl~Dfg~a~~~~~~~~~------~~~~gt~~y~aPE~~~~~~------  193 (326)
T 2y0a_A          127 VYYLHSLQIAHFDLKPENIMLLDRNVPK-PRIKIIDFGLAHKIDFGNEF------KNIFGTPEFVAPEIVNYEP------  193 (326)
T ss_dssp             HHHHHHTTEECCCCCGGGEEESCSSSSS-CCEEECCCTTCEECCTTSCC------CCCCSCTTTCCHHHHTTCC------
T ss_pred             HHHHHHCCeEcCCCCHHHEEEecCCCCC-CCEEEEECCCCeECCCCCcc------ccccCCcCcCCceeecCCC------
Confidence            9999999999999999999998763211 38999999999876543211      2457999999999997654      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCccccccccccc------cccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHH
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV------NALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVC  506 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~------~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L  506 (588)
                      ++.++|||||||++|||++|..||.+.........      ......+..+++.+++||.+||+.||.+|||++++++  
T Consensus       194 ~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~--  271 (326)
T 2y0a_A          194 LGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQ--  271 (326)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH--
T ss_pred             CCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHhcCCCcCccccccCCHHHHHHHHHHccCChhhCCCHHHHhc--
Confidence            45789999999999999999999976432221111      0111123567899999999999999999999999999  


Q ss_pred             hhhhhcCCccccCC
Q psy4039         507 QLYLWAPKHWLYGA  520 (588)
Q Consensus       507 ~~~~~~~h~w~~~~  520 (588)
                             |||++..
T Consensus       272 -------hp~~~~~  278 (326)
T 2y0a_A          272 -------HPWIKPK  278 (326)
T ss_dssp             -------STTTSCC
T ss_pred             -------CCCccCC
Confidence                   9999744

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=1.1e-44  Score=385.75  Aligned_cols=260  Identities=22%  Similarity=0.272  Sum_probs=194.9

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      .++|++.+.||+|+||.||+|.+.  ++.||||++.....  +.             .......+|+.++..+   ..||
T Consensus         8 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~--~~-------------~~~~~~~~E~~~l~~l---~~h~   69 (388)
T 3oz6_A            8 LRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQ--NS-------------TDAQRTFREIMILTEL---SGHE   69 (388)
T ss_dssp             HTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--C--CH-------------HHHHHHHHHHHHHHHT---TTCT
T ss_pred             cCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEeccccc--Ch-------------HHHHHHHHHHHHHHhc---cCCC
Confidence            489999999999999999999987  88999999853211  11             0123345788999887   3599


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |||++++++....                          ...+|+||||++|+|.+++...  .+++..+..++.||+.|
T Consensus        70 niv~l~~~~~~~~--------------------------~~~~~lv~e~~~~~L~~~~~~~--~~~~~~~~~i~~qi~~~  121 (388)
T 3oz6_A           70 NIVNLLNVLRADN--------------------------DRDVYLVFDYMETDLHAVIRAN--ILEPVHKQYVVYQLIKV  121 (388)
T ss_dssp             TBCCEEEEEECTT--------------------------SSCEEEEEECCSEEHHHHHHHT--CCCHHHHHHHHHHHHHH
T ss_pred             CCCeeeeEEecCC--------------------------CCEEEEEecccCcCHHHHHHcC--CCCHHHHHHHHHHHHHH
Confidence            9999999987532                          1248999999999999999875  89999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccc----------------cccccccccCCccc
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQ----------------YSSADIELGGNVAL  416 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~----------------~~~~~~~~~GT~~Y  416 (588)
                      |.|||++||+||||||+|||++.+     +.+||+|||+|+.........                ........+||+.|
T Consensus       122 L~~LH~~~ivHrDlkp~NIll~~~-----~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y  196 (388)
T 3oz6_A          122 IKYLHSGGLLHRDMKPSNILLNAE-----CHVKVADFGLSRSFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWY  196 (388)
T ss_dssp             HHHHHHTTEECCCCCGGGEEECTT-----CCEEECCCTTCEESSSCCCCCCCGGGCCC---------------CCCGGGG
T ss_pred             HHHHHhCCEEeCCCCHHHeEEcCC-----CCEEecCCcccccccccccccccccccccccccccccccccccCCcccCCc
Confidence            999999999999999999999988     899999999998754311100                01112346899999


Q ss_pred             cchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccccc-----------------------------
Q psy4039         417 MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV-----------------------------  467 (588)
Q Consensus       417 ~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~-----------------------------  467 (588)
                      +|||++.+...     ++.++||||+||++|||++|++||.+.........                             
T Consensus       197 ~aPE~~~~~~~-----~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~  271 (388)
T 3oz6_A          197 RAPEILLGSTK-----YTKGIDMWSLGCILGEILCGKPIFPGSSTMNQLERIIGVIDFPSNEDVESIQSPFAKTMIESLK  271 (388)
T ss_dssp             CCHHHHTTCCC-----CCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHHTSCCSSHHHHHHHHH
T ss_pred             CCHHHhcCCCC-----CCChhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHhccCHHHHHHHHhCc
Confidence            99999976321     45789999999999999999999976321111000                             


Q ss_pred             -------ccc-------------CCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccC
Q psy4039         468 -------NAL-------------PQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       468 -------~~~-------------~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~  519 (588)
                             ...             ...+..+++++.+||.+||+.||++|||++++++         |||++.
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~t~~e~l~---------Hp~~~~  334 (388)
T 3oz6_A          272 EKVEIRQSNKRDIFTKWKNLLLKINPKADCNEEALDLLDKLLQFNPNKRISANDALK---------HPFVSI  334 (388)
T ss_dssp             HHCC-----CCCCHHHHHHHHHHHCTTCCCCHHHHHHHHHHCCSSGGGSCCHHHHTT---------STTTTT
T ss_pred             ccccccCCCHHHhCcchhhhcccccccccCCHHHHHHHHHhhccCcccCCCHHHHhC---------CHHHHH
Confidence                   000             0012367899999999999999999999999999         999973

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=100.00  E-value=8.4e-45  Score=390.23  Aligned_cols=262  Identities=26%  Similarity=0.403  Sum_probs=206.8

Q ss_pred             ccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCC
Q psy4039         192 DVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLP  269 (588)
Q Consensus       192 ~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~  269 (588)
                      .+..++|++.+.||+|+||.||+|+++  ++.||||++.+..           ...+   .....+.+|..++..+    
T Consensus        57 ~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~-----------~~~~---~~~~~~~~E~~il~~~----  118 (412)
T 2vd5_A           57 RLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWD-----------MLKR---GEVSCFREERDVLVNG----  118 (412)
T ss_dssp             SCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHH-----------HHHH---GGGCCHHHHHHHHHHS----
T ss_pred             cCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHH-----------hhhH---HHHHHHHHHHHHHHhc----
Confidence            345589999999999999999999996  8999999995311           0111   1234567799999887    


Q ss_pred             CCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHH
Q psy4039         270 PHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQ  348 (588)
Q Consensus       270 ~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~q  348 (588)
                      +||||++++++|.+..                            .+|+||||+ +|+|.+++...+..+++..+..++.|
T Consensus       119 ~hp~Iv~l~~~~~~~~----------------------------~~~lVmE~~~gg~L~~~l~~~~~~l~~~~~~~~~~q  170 (412)
T 2vd5_A          119 DRRWITQLHFAFQDEN----------------------------YLYLVMEYYVGGDLLTLLSKFGERIPAEMARFYLAE  170 (412)
T ss_dssp             CTTTBCCEEEEEECSS----------------------------EEEEEECCCCSCBHHHHHHHHSSCCCHHHHHHHHHH
T ss_pred             CCCCeeeEEEEEeeCC----------------------------EEEEEEcCCCCCcHHHHHHhcCCCCCHHHHHHHHHH
Confidence            9999999999998732                            499999999 78999999887658999999999999


Q ss_pred             HHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCC
Q psy4039         349 LLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGL  428 (588)
Q Consensus       349 l~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~  428 (588)
                      |+.||.|||++||+||||||+|||++.+     +.+||+|||+|+........    .....+||+.|+|||++......
T Consensus       171 i~~aL~~LH~~giiHrDLKp~NILld~~-----g~vkL~DFGla~~~~~~~~~----~~~~~~Gt~~Y~APE~l~~~~~~  241 (412)
T 2vd5_A          171 IVMAIDSVHRLGYVHRDIKPDNILLDRC-----GHIRLADFGSCLKLRADGTV----RSLVAVGTPDYLSPEILQAVGGG  241 (412)
T ss_dssp             HHHHHHHHHHTTEECCCCSGGGEEECTT-----SCEEECCCTTCEECCTTSCE----ECSSCCSCGGGCCHHHHHHHHTC
T ss_pred             HHHHHHHHHHCCeeecccCHHHeeecCC-----CCEEEeechhheeccCCCcc----ccceeccccCcCCHHHHhhcccC
Confidence            9999999999999999999999999988     89999999999876543221    11246899999999999742100


Q ss_pred             -ccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccccc-------cccCCCCCCccHHHHHHHHHhhhhCCCCC---C
Q psy4039         429 -FSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV-------NALPQLNTNVPEVMRRLVAKLLENDPSDR---P  497 (588)
Q Consensus       429 -~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~-------~~~~~~~~~~~~~l~~Li~~~L~~dP~~R---p  497 (588)
                       -...++.++|||||||++|||++|+.||.+......+..       ...+..+..+|+++++||.+||. +|.+|   |
T Consensus       242 ~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~~s~~~~dli~~lL~-~p~~Rlgr~  320 (412)
T 2vd5_A          242 PGTGSYGPECDWWALGVFAYEMFYGQTPFYADSTAETYGKIVHYKEHLSLPLVDEGVPEEARDFIQRLLC-PPETRLGRG  320 (412)
T ss_dssp             TTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHHHCCCC----CCCHHHHHHHHTTSS-CGGGCTTTT
T ss_pred             cCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCCHHHHHHHHHhcccCcCCCccccCCCHHHHHHHHHHcC-ChhhcCCCC
Confidence             001145789999999999999999999987533222111       12233446799999999999999 99998   5


Q ss_pred             CHHHHHHHHhhhhhcCCcccc
Q psy4039         498 SAELAATVCQLYLWAPKHWLY  518 (588)
Q Consensus       498 s~~e~l~~L~~~~~~~h~w~~  518 (588)
                      +++++++         ||||+
T Consensus       321 ~~~ei~~---------Hpff~  332 (412)
T 2vd5_A          321 GAGDFRT---------HPFFF  332 (412)
T ss_dssp             THHHHHT---------SGGGT
T ss_pred             CHHHHhc---------CCCcC
Confidence            8999888         99987

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=100.00  E-value=1.3e-44  Score=382.20  Aligned_cols=252  Identities=20%  Similarity=0.336  Sum_probs=204.5

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||.||+|.+.  +..||||++........               ..+.+.+|+.+++.+    +|||
T Consensus        29 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~---------------~~~~~~~E~~il~~l----~hpn   89 (362)
T 2bdw_A           29 DNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSAR---------------DFQKLEREARICRKL----QHPN   89 (362)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHH---------------HHHHHHHHHHHHHHC----CCTT
T ss_pred             cCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHH---------------HHHHHHHHHHHHHhC----CCCC
Confidence            78999999999999999999997  88999999964322110               123466799999998    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      ||++++++.+..                            ..|+||||+ +|+|.+++.... .+++.++..++.||+.|
T Consensus        90 Iv~~~~~~~~~~----------------------------~~~lv~e~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~a  140 (362)
T 2bdw_A           90 IVRLHDSIQEES----------------------------FHYLVFDLVTGGELFEDIVARE-FYSEADASHCIQQILES  140 (362)
T ss_dssp             BCCEEEEEECSS----------------------------EEEEEECCCCSCBHHHHHTTCS-CCCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEEeCC----------------------------EEEEEEecCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence            999999998632                            489999999 579999997654 79999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||++||+||||||+|||++.+..+  +.+||+|||+++.......      ....+||+.|+|||++.+..      
T Consensus       141 l~~lH~~~ivH~Dlkp~NIll~~~~~~--~~~kl~DfG~a~~~~~~~~------~~~~~gt~~y~aPE~~~~~~------  206 (362)
T 2bdw_A          141 IAYCHSNGIVHRNLKPENLLLASKAKG--AAVKLADFGLAIEVNDSEA------WHGFAGTPGYLSPEVLKKDP------  206 (362)
T ss_dssp             HHHHHHTTCBCCCCSGGGEEESCSSTT--CCEEECCCTTCBCCTTCCS------CCCSCSCTTTCCHHHHTTCC------
T ss_pred             HHHHHHCCeEeccCchHHEEEecCCCC--CCEEEeecCcceEecCCcc------cccCCCCccccCHHHHccCC------
Confidence            999999999999999999999865221  4699999999987654221      12467999999999997654      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCccccccccccc------cccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHH
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV------NALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVC  506 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~------~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L  506 (588)
                      ++.++|||||||++|||++|..||.+......+..      ......+..+++++++||.+||+.||++|||++++++  
T Consensus       207 ~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~--  284 (362)
T 2bdw_A          207 YSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDYPSPEWDTVTPEAKSLIDSMLTVNPKKRITADQALK--  284 (362)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTGGGGSCHHHHHHHHHHSCSSGGGSCCHHHHTT--
T ss_pred             CCchhhHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHcCCChhhCcCHHHHhc--
Confidence            45789999999999999999999976432211110      0111223467899999999999999999999999998  


Q ss_pred             hhhhhcCCcccc
Q psy4039         507 QLYLWAPKHWLY  518 (588)
Q Consensus       507 ~~~~~~~h~w~~  518 (588)
                             |||+.
T Consensus       285 -------hp~~~  289 (362)
T 2bdw_A          285 -------VPWIC  289 (362)
T ss_dssp             -------SHHHH
T ss_pred             -------CcccC
Confidence                   99986

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=100.00  E-value=1.6e-44  Score=375.03  Aligned_cols=253  Identities=23%  Similarity=0.285  Sum_probs=198.8

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      +++|.+.+.||+|+||+||+|.+.  ++.||||++.....                ......+.+|+.+++.+    +||
T Consensus         1 l~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~----------------~~~~~~~~~E~~~l~~l----~h~   60 (324)
T 3mtl_A            1 METYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHE----------------EGAPCTAIREVSLLKDL----KHA   60 (324)
T ss_dssp             CCSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC----------------------CCCCCCCHHHHSCC----CCT
T ss_pred             CCceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccc----------------cccchhHHHHHHHHHhc----CCC
Confidence            378999999999999999999997  78999999853211                01223455799999887    899


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      ||+++++++.+..                            ..++||||++|+|.+++...+..+++..+..++.||+.|
T Consensus        61 ~iv~~~~~~~~~~----------------------------~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~a  112 (324)
T 3mtl_A           61 NIVTLHDIIHTEK----------------------------SLTLVFEYLDKDLKQYLDDCGNIINMHNVKLFLFQLLRG  112 (324)
T ss_dssp             TBCCEEEEEECSS----------------------------CEEEEEECCSEEHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred             CCCeeeeEEeeCC----------------------------EEEEEecccccCHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence            9999999987632                            389999999999999999876679999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||++||+||||||+|||++.+     +.+||+|||+++.......     ......||+.|+|||++.+...     
T Consensus       113 L~~LH~~~ivH~Dikp~NIl~~~~-----~~~kl~Dfg~a~~~~~~~~-----~~~~~~~t~~y~aPE~~~~~~~-----  177 (324)
T 3mtl_A          113 LAYCHRQKVLHRDLKPQNLLINER-----GELKLADFGLARAKSIPTK-----TYDNEVVTLWYRPPDILLGSTD-----  177 (324)
T ss_dssp             HHHHHHTTEEESSCCGGGEEECTT-----CCEEECSSSEEECC-----------------CGGGCCHHHHTTCCC-----
T ss_pred             HHHHHHCCccCCCcCHHHEEECCC-----CCEEEccCcccccccCCcc-----ccccccCcccccChhhhcCCCC-----
Confidence            999999999999999999999988     7999999999986543211     1114568999999999976431     


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcccccccccc----------cc----------------------ccCCCCCCccHH
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE----------VN----------------------ALPQLNTNVPEV  480 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~----------~~----------------------~~~~~~~~~~~~  480 (588)
                      ++.++|||||||++|||++|+.||.+........          ..                      ........++++
T Consensus       178 ~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (324)
T 3mtl_A          178 YSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEFKTYNYPKYRAEALLSHAPRLDSD  257 (324)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGCHHHHHTCCCCCCCCCHHHHCTTSCHH
T ss_pred             CCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHhchhhhcchhhcccccccccchhhhhhcCCCCHH
Confidence            4578999999999999999999997632111000          00                      000112357889


Q ss_pred             HHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccC
Q psy4039         481 MRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       481 l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~  519 (588)
                      +.+||.+||+.||.+|||++|+++         ||||..
T Consensus       258 ~~~li~~~L~~dP~~R~t~~e~l~---------hp~f~~  287 (324)
T 3mtl_A          258 GADLLTKLLQFEGRNRISAEDAMK---------HPFFLS  287 (324)
T ss_dssp             HHHHHHHHSCSSGGGSCCHHHHTT---------SGGGGG
T ss_pred             HHHHHHHHcCcCcccCCCHHHHhc---------Chhhhh
Confidence            999999999999999999999999         999983

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=100.00  E-value=1.2e-44  Score=379.79  Aligned_cols=249  Identities=21%  Similarity=0.313  Sum_probs=201.4

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||.||+|.++  ++.||||++...                     .....+|+.++.++   .+|||
T Consensus        22 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~---------------------~~~~~~E~~~l~~~---~~hp~   77 (342)
T 2qr7_A           22 DGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKS---------------------KRDPTEEIEILLRY---GQHPN   77 (342)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETT---------------------TCCCHHHHHHHHHH---TTSTT
T ss_pred             ccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcc---------------------cCChHHHHHHHHHh---cCCCC
Confidence            78999999999999999999997  889999999532                     12345688888776   58999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++++.+..                            .+|+||||+ +|+|.+++.... .+++.++..++.||+.|
T Consensus        78 iv~~~~~~~~~~----------------------------~~~lv~E~~~gg~L~~~i~~~~-~~~~~~~~~~~~qi~~a  128 (342)
T 2qr7_A           78 IITLKDVYDDGK----------------------------YVYVVTELMKGGELLDKILRQK-FFSEREASAVLFTITKT  128 (342)
T ss_dssp             BCCEEEEEECSS----------------------------EEEEEECCCCSCBHHHHHHTCT-TCCHHHHHHHHHHHHHH
T ss_pred             cCeEEEEEEcCC----------------------------EEEEEEeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence            999999998632                            599999999 679999997654 79999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||++||+||||||+|||+.++... .+.+||+|||+++........     ....+||+.|+|||++.+..      
T Consensus       129 l~~lH~~givHrDlkp~NIl~~~~~~~-~~~~kl~Dfg~a~~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~------  196 (342)
T 2qr7_A          129 VEYLHAQGVVHRDLKPSNILYVDESGN-PESIRICDFGFAKQLRAENGL-----LMTPCYTANFVAPEVLERQG------  196 (342)
T ss_dssp             HHHHHHTTEECSCCCGGGEEESSSSCS-GGGEEECCCTTCEECBCTTCC-----BCCSSCCSSCCCHHHHHHHH------
T ss_pred             HHHHHHCCcEeccCCHHHEEEecCCCC-cCeEEEEECCCcccCcCCCCc-----eeccCCCccccCHHHhcCCC------
Confidence            999999999999999999999654221 146999999999876543211     12467999999999997654      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCccccccc---cc------cccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHH
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNT---DY------EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAA  503 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~---~~------~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l  503 (588)
                      ++.++|||||||++|||++|..||.+.....   ..      ........+..+++++++||.+||+.||++|||+++++
T Consensus       197 ~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~~il  276 (342)
T 2qr7_A          197 YDAACDIWSLGVLLYTMLTGYTPFANGPDDTPEEILARIGSGKFSLSGGYWNSVSDTAKDLVSKMLHVDPHQRLTAALVL  276 (342)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCSSCSSTTSCHHHHHHHHHHCCCCCCSTTTTTSCHHHHHHHHHHTCSSTTTSCCHHHHT
T ss_pred             CCCccCeeeHhHHHHHHhcCCCCCCCCCcCCHHHHHHHHccCCcccCccccccCCHHHHHHHHHHCCCChhHCcCHHHHh
Confidence            3467999999999999999999997532111   00      01111233467899999999999999999999999998


Q ss_pred             HHHhhhhhcCCcccc
Q psy4039         504 TVCQLYLWAPKHWLY  518 (588)
Q Consensus       504 ~~L~~~~~~~h~w~~  518 (588)
                      +         |||+.
T Consensus       277 ~---------hp~~~  282 (342)
T 2qr7_A          277 R---------HPWIV  282 (342)
T ss_dssp             T---------SHHHH
T ss_pred             c---------CCeec
Confidence            8         99985

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=100.00  E-value=5.9e-44  Score=386.01  Aligned_cols=264  Identities=19%  Similarity=0.195  Sum_probs=199.7

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||.||+|.+.  ++.||||++.....  +.             ...+.+.+|+.+++.+    +|||
T Consensus        26 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~--~~-------------~~~~~~~~E~~~l~~l----~h~n   86 (432)
T 3n9x_A           26 DNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFE--DL-------------IDCKRILREITILNRL----KSDY   86 (432)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTT--SH-------------HHHHHHHHHHHHHHHC----CCTT
T ss_pred             CCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhc--Ch-------------HHHHHHHHHHHHHHHc----CCCC
Confidence            78999999999999999999987  78999999953211  10             0223466799999998    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      ||++++++....                       ......+|+||||++|+|.+++.... .+++..+..++.||+.||
T Consensus        87 Iv~l~~~~~~~~-----------------------~~~~~~~~lv~e~~~~~L~~~~~~~~-~l~~~~~~~i~~qil~aL  142 (432)
T 3n9x_A           87 IIRLYDLIIPDD-----------------------LLKFDELYIVLEIADSDLKKLFKTPI-FLTEEHIKTILYNLLLGE  142 (432)
T ss_dssp             BCCEEEECCCSC-----------------------TTTCCCEEEEEECCSEEHHHHHHSSC-CCCHHHHHHHHHHHHHHH
T ss_pred             cceEEEEEecCC-----------------------CCcCCeEEEEEecCCcCHHHHHhccC-CCCHHHHHHHHHHHHHHH
Confidence            999999987631                       11223599999999999999997653 799999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccc-----------------cccccccccCCccc
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQ-----------------YSSADIELGGNVAL  416 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~-----------------~~~~~~~~~GT~~Y  416 (588)
                      .|||++||+||||||+|||++.+     +.+||+|||+|+.........                 ........+||+.|
T Consensus       143 ~~LH~~givHrDlkp~NILl~~~-----~~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y  217 (432)
T 3n9x_A          143 NFIHESGIIHRDLKPANCLLNQD-----CSVKVCDFGLARTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWY  217 (432)
T ss_dssp             HHHHHTTEECCCCCGGGEEECTT-----CCEEECCCTTCEEC-------------------------------CCCCCTT
T ss_pred             HHHHHCCCCCCCCCHHHeEECCC-----CCEEEccCCCcccccccccccccccccccccccccccchhccccCCCCCccc
Confidence            99999999999999999999988     899999999998765422110                 00112467899999


Q ss_pred             cchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccc-------------------------------
Q psy4039         417 MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY-------------------------------  465 (588)
Q Consensus       417 ~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~-------------------------------  465 (588)
                      +|||++.....     ++.++||||+||++|||++|..||.........                               
T Consensus       218 ~APE~~~~~~~-----~~~~~DiwSlG~il~ell~g~~p~~~~~~~~~p~f~g~~~~~~~~~~~~~~~~~~~~~~ql~~i  292 (432)
T 3n9x_A          218 RAPELILLQEN-----YTKSIDIWSTGCIFAELLNMLQSHINDPTNRFPLFPGSSCFPLSPDRNSKKVHEKSNRDQLNII  292 (432)
T ss_dssp             CCHHHHTTCSC-----CCTHHHHHHHHHHHHHHHTTCTTTCSSGGGCCCSCCCSCSCC----------CHHHHHHHHHHH
T ss_pred             cCHHHHhcCCC-----CCcccccchHHHHHHHHHhcccccccccccccccCCCccccccCcccccccccccchHHHHHHH
Confidence            99999754331     457899999999999999865554331100000                               


Q ss_pred             -----------------------cc--cccC-----CCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCc
Q psy4039         466 -----------------------EV--NALP-----QLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKH  515 (588)
Q Consensus       466 -----------------------~~--~~~~-----~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~  515 (588)
                                             ..  ....     .....+++++.+||.+||+.||.+|||++|+++         ||
T Consensus       293 ~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~---------Hp  363 (432)
T 3n9x_A          293 FNIIGTPTEDDLKNINKPEVIKYIKLFPHRKPINLKQKYPSISDDGINLLESMLKFNPNKRITIDQALD---------HP  363 (432)
T ss_dssp             HHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT---------CG
T ss_pred             HHhcCCCCHHHHHhccCHHHHHHHHhCCCCCCCCHHHHCCCCCHHHHHHHHHHhcCCcccCCCHHHHhc---------Ch
Confidence                                   00  0000     011457899999999999999999999999999         99


Q ss_pred             cccCCC
Q psy4039         516 WLYGAT  521 (588)
Q Consensus       516 w~~~~~  521 (588)
                      |++...
T Consensus       364 ~f~~~~  369 (432)
T 3n9x_A          364 YLKDVR  369 (432)
T ss_dssp             GGTTTC
T ss_pred             hhhhcc
Confidence            998543

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=100.00  E-value=5.8e-44  Score=393.47  Aligned_cols=322  Identities=20%  Similarity=0.257  Sum_probs=226.8

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      .++|.+.+.||+|+||+||+|.+.  +..||||++............    .........+.+.+|+.+++.+    +||
T Consensus        35 ~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~----~~~~~~~~~~~~~~E~~~l~~l----~hp  106 (504)
T 3q5i_A           35 GESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSD----DNKNIEKFHEEIYNEISLLKSL----DHP  106 (504)
T ss_dssp             GGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC--------------------CTHHHHHHHHHHHHTC----CCT
T ss_pred             ccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccc----cchhhHHHHHHHHHHHHHHHhC----CCC
Confidence            378999999999999999999997  789999999653322110000    0000111334567899999987    899


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLE  351 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~  351 (588)
                      |||+++++|.+..                            .+++||||| +|+|.+++.... .+++..+..++.||+.
T Consensus       107 niv~~~~~~~~~~----------------------------~~~lv~e~~~gg~L~~~l~~~~-~~~~~~~~~i~~qi~~  157 (504)
T 3q5i_A          107 NIIKLFDVFEDKK----------------------------YFYLVTEFYEGGELFEQIINRH-KFDECDAANIMKQILS  157 (504)
T ss_dssp             TBCCEEEEEECSS----------------------------EEEEEEECCTTCBHHHHHHHHS-CCCHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEEcCC----------------------------EEEEEEecCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            9999999998632                            499999999 579999998765 8999999999999999


Q ss_pred             HHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccC
Q psy4039         352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF  431 (588)
Q Consensus       352 gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~  431 (588)
                      ||.|||++||+||||||+|||++.+..  ...+||+|||+|+........      ...+||+.|+|||++.+.      
T Consensus       158 ~l~~lH~~~ivH~Dlkp~Nil~~~~~~--~~~~kl~Dfg~a~~~~~~~~~------~~~~gt~~y~aPE~~~~~------  223 (504)
T 3q5i_A          158 GICYLHKHNIVHRDIKPENILLENKNS--LLNIKIVDFGLSSFFSKDYKL------RDRLGTAYYIAPEVLKKK------  223 (504)
T ss_dssp             HHHHHHHTTEECSCCSGGGEEESSTTC--CSSEEECCCTTCEECCTTSCB------CCCCSCTTTCCHHHHTTC------
T ss_pred             HHHHHHHCCeEeCCCcHHHEEEecCCC--CccEEEEECCCCEEcCCCCcc------ccccCCcCCCCHHHhccC------
Confidence            999999999999999999999987621  137999999999876543221      245799999999998642      


Q ss_pred             CCCCcCchhhHHHHHHHHhcCCCCCcccccccccccccc------CCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHH
Q psy4039         432 VNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNAL------PQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATV  505 (588)
Q Consensus       432 ~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~~~~------~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~  505 (588)
                       ++.++||||+||++|+|++|..||.+............      .+.+..+|+++++||.+||+.||.+|||++++++ 
T Consensus       224 -~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~e~l~-  301 (504)
T 3q5i_A          224 -YNEKCDVWSCGVIMYILLCGYPPFGGQNDQDIIKKVEKGKYYFDFNDWKNISDEAKELIKLMLTYDYNKRCTAEEALN-  301 (504)
T ss_dssp             -BCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT-
T ss_pred             -CCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCccccCCCCHHHHHHHHHHcCCChhHCCCHHHHhc-
Confidence             45789999999999999999999987433222111100      1112568999999999999999999999999999 


Q ss_pred             HhhhhhcCCccccCCCCChhHH-HHHHHhhhccccccCccccCCcccCHHHHHHHHH-hhhHHhHHHHHHHHHHHHHh
Q psy4039         506 CQLYLWAPKHWLYGATPSHNEI-MQWLLTLTTKVLCTGVSYGGHVRRTFVEYQLIST-FLKRAEFRLITNALQYIQRV  581 (588)
Q Consensus       506 L~~~~~~~h~w~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~-fl~~~~~~~i~~a~~~~~~~  581 (588)
                              |||++......... ...+.    ..+.....+....+........+.. ++...+.++++.++..+|..
T Consensus       302 --------h~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~kl~~a~l~~i~~~~~~~~~~~~l~~~F~~~D~d  367 (504)
T 3q5i_A          302 --------SRWIKKYANNINKSDQKTLC----GALSNMRKFEGSQKLAQAAILFIGSKLTTLEERKELTDIFKKLDKN  367 (504)
T ss_dssp             --------SHHHHHTCCCCCGGGHHHHH----HHHHHHHHCCCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT
T ss_pred             --------CHhhhhchhcccccchhhHH----HHHHHHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHeeCCC
Confidence                    99998443322110 00010    1111112222333333333334433 44666677777777777654

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=100.00  E-value=1.2e-43  Score=372.83  Aligned_cols=251  Identities=23%  Similarity=0.341  Sum_probs=191.9

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      +.|++.+.||+|+||.||+|.+.  ++.||||++....                   ..+.+.+|+.+++.+    +|||
T Consensus        53 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~-------------------~~~~~~~E~~~l~~l----~h~n  109 (349)
T 2w4o_A           53 DFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV-------------------DKKIVRTEIGVLLRL----SHPN  109 (349)
T ss_dssp             GTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC-----------------------------CHHHHHC----CCTT
T ss_pred             CcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch-------------------hHHHHHHHHHHHHhC----CCCC
Confidence            78999999999999999999997  6789999985321                   123456799999997    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |++++++|.+..                            ..++||||+ +|+|.+++.... .+++.++..++.|++.|
T Consensus       110 iv~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~  160 (349)
T 2w4o_A          110 IIKLKEIFETPT----------------------------EISLVLELVTGGELFDRIVEKG-YYSERDAADAVKQILEA  160 (349)
T ss_dssp             BCCEEEEEECSS----------------------------EEEEEECCCCSCBHHHHHTTCS-SCCHHHHHHHHHHHHHH
T ss_pred             CcceeeeEecCC----------------------------eEEEEEEeCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHH
Confidence            999999997632                            489999999 589999997654 79999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||++||+||||||+|||++....  .+.+||+|||+++.......      .....||+.|+|||++.+..      
T Consensus       161 L~~LH~~~ivH~Dikp~NIll~~~~~--~~~~kl~Dfg~a~~~~~~~~------~~~~~gt~~y~aPE~~~~~~------  226 (349)
T 2w4o_A          161 VAYLHENGIVHRDLKPENLLYATPAP--DAPLKIADFGLSKIVEHQVL------MKTVCGTPGYCAPEILRGCA------  226 (349)
T ss_dssp             HHHHHHTTCCCCCCCGGGEEESSSST--TCCEEECCCC----------------------CGGGSCHHHHTTCC------
T ss_pred             HHHHHHCCeEecCCCcccEEEecCCC--CCCEEEccCccccccCcccc------cccccCCCCccCHHHhcCCC------
Confidence            99999999999999999999986211  17899999999987544211      12467999999999997654      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCccccccc-c---c---cccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHH
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNT-D---Y---EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATV  505 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~-~---~---~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~  505 (588)
                      ++.++|||||||++|||++|..||....... .   .   ......+.+..++.++++||.+||+.||++|||++++++ 
T Consensus       227 ~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~-  305 (349)
T 2w4o_A          227 YGPEVDMWSVGIITYILLCGFEPFYDERGDQFMFRRILNCEYYFISPWWDEVSLNAKDLVRKLIVLDPKKRLTTFQALQ-  305 (349)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSSCTTCCTTCHHHHHHHHHTTCCCCCTTTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH-
T ss_pred             CCcccchHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhCCCccCCchhhhCCHHHHHHHHHHccCChhhCcCHHHHhc-
Confidence            4578999999999999999999997643221 0   0   011122334678999999999999999999999999999 


Q ss_pred             HhhhhhcCCccccCCC
Q psy4039         506 CQLYLWAPKHWLYGAT  521 (588)
Q Consensus       506 L~~~~~~~h~w~~~~~  521 (588)
                              |||+....
T Consensus       306 --------hp~~~~~~  313 (349)
T 2w4o_A          306 --------HPWVTGKA  313 (349)
T ss_dssp             --------STTTTSTT
T ss_pred             --------CcccCCCc
Confidence                    99997543

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=100.00  E-value=4.6e-44  Score=379.74  Aligned_cols=256  Identities=26%  Similarity=0.355  Sum_probs=199.7

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHH-hhhcC
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLM-NSVEN  267 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il-~~l~~  267 (588)
                      ..+..++|++.+.||+|+||.||+|+++  ++.||||++.+.......              ....+.+|..++ +.   
T Consensus        33 ~~~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~--------------~~~~~~~e~~~ll~~---   95 (373)
T 2r5t_A           33 PHAKPSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKK--------------EEKHIMSERNVLLKN---   95 (373)
T ss_dssp             TTCCGGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC---------------------------CCBCC---
T ss_pred             CCCChhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhH--------------HHHHHHHHHHHHHHh---
Confidence            4566789999999999999999999997  788999999653322110              112233454443 33   


Q ss_pred             CCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHH
Q psy4039         268 LPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLF  346 (588)
Q Consensus       268 l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~  346 (588)
                       .+|||||+++++|.+..                            .+|+||||+ +|+|.+++.... .+++..++.++
T Consensus        96 -~~hp~Iv~l~~~~~~~~----------------------------~~~lv~E~~~gg~L~~~l~~~~-~~~~~~~~~~~  145 (373)
T 2r5t_A           96 -VKHPFLVGLHFSFQTAD----------------------------KLYFVLDYINGGELFYHLQRER-CFLEPRARFYA  145 (373)
T ss_dssp             -CCCTTBCCEEEEEECSS----------------------------EEEEEEECCCSCBHHHHHHHHS-SCCHHHHHHHH
T ss_pred             -CCCCCCCCEEEEEEeCC----------------------------EEEEEEeCCCCCcHHHHHHhcC-CCCHHHHHHHH
Confidence             48999999999998732                            599999999 579999998764 79999999999


Q ss_pred             HHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCC
Q psy4039         347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP  426 (588)
Q Consensus       347 ~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~  426 (588)
                      .||+.||.|||++||+||||||+|||++.+     +.+||+|||+|+.......     .....+||+.|+|||++.+..
T Consensus       146 ~qi~~aL~~LH~~givHrDlkp~NIll~~~-----g~ikL~DFG~a~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~  215 (373)
T 2r5t_A          146 AEIASALGYLHSLNIVYRDLKPENILLDSQ-----GHIVLTDFGLCKENIEHNS-----TTSTFCGTPEYLAPEVLHKQP  215 (373)
T ss_dssp             HHHHHHHHHHHHTTCCCCCCCGGGEEECTT-----SCEEECCCCBCGGGBCCCC-----CCCSBSCCCCCCCHHHHTTCC
T ss_pred             HHHHHHHHHHHHCCceecCCCHHHEEECCC-----CCEEEeeCccccccccCCC-----ccccccCCccccCHHHhCCCC
Confidence            999999999999999999999999999988     8999999999986432211     122578999999999998765


Q ss_pred             CCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccccc--cccCCCCCCccHHHHHHHHHhhhhCCCCCCCH----H
Q psy4039         427 GLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV--NALPQLNTNVPEVMRRLVAKLLENDPSDRPSA----E  500 (588)
Q Consensus       427 ~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~--~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~----~  500 (588)
                            ++.++|||||||++|||++|..||.+......+..  .....++..+++++++||.+||+.||.+||++    +
T Consensus       216 ------~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~lL~~dp~~R~~~~~~~~  289 (373)
T 2r5t_A          216 ------YDRTVDWWCLGAVLYEMLYGLPPFYSRNTAEMYDNILNKPLQLKPNITNSARHLLEGLLQKDRTKRLGAKDDFM  289 (373)
T ss_dssp             ------CCTHHHHHHHHHHHHHHHHSSCTTCCSBHHHHHHHHHHSCCCCCSSSCHHHHHHHHHHTCSSGGGSTTTTTTHH
T ss_pred             ------CCchhhhHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHHcccCHHhCCCCCCCHH
Confidence                  45789999999999999999999987533222211  12234567899999999999999999999997    4


Q ss_pred             HHHHHHhhhhhcCCcccc
Q psy4039         501 LAATVCQLYLWAPKHWLY  518 (588)
Q Consensus       501 e~l~~L~~~~~~~h~w~~  518 (588)
                      ++++         |||++
T Consensus       290 ~i~~---------h~~f~  298 (373)
T 2r5t_A          290 EIKS---------HVFFS  298 (373)
T ss_dssp             HHHT---------SGGGT
T ss_pred             HHhC---------Ccccc
Confidence            5555         89886

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=100.00  E-value=2.5e-44  Score=392.50  Aligned_cols=254  Identities=24%  Similarity=0.288  Sum_probs=196.0

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      .++|++.+.||+|+||+||+|.+.  ++.||||++.....  +.             ...+.+.+|+.+++.+    +||
T Consensus        61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~--~~-------------~~~~~~~~E~~~l~~l----~hp  121 (464)
T 3ttj_A           61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQ--NQ-------------THAKRAYRELVLMKCV----NHK  121 (464)
T ss_dssp             ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGG--SH-------------HHHHHHHHHHHHHHHC----CCT
T ss_pred             cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECcccc--Ch-------------HHHHHHHHHHHHHHhC----CCC
Confidence            488999999999999999999987  88999999953210  10             1223456799999987    999


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |||++++++....                      .......+|+||||++++|.+.+..   .+++..+..++.||+.|
T Consensus       122 nIv~l~~~~~~~~----------------------~~~~~~~~~lv~E~~~~~l~~~~~~---~l~~~~~~~~~~qil~a  176 (464)
T 3ttj_A          122 NIISLLNVFTPQK----------------------TLEEFQDVYLVMELMDANLCQVIQM---ELDHERMSYLLYQMLCG  176 (464)
T ss_dssp             TBCCCSEEECSCC----------------------STTTCCEEEEEEECCSEEHHHHHTS---CCCHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEccCC----------------------ccccCCeEEEEEeCCCCCHHHHHhh---cCCHHHHHHHHHHHHHH
Confidence            9999999997632                      1122346899999999888887743   69999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||++||+||||||+|||++.+     +.+||+|||+|+.......      ....+||+.|+|||++.+..      
T Consensus       177 L~~lH~~~iiHrDlkp~NIll~~~-----~~~kl~DFG~a~~~~~~~~------~~~~~gt~~y~aPE~~~~~~------  239 (464)
T 3ttj_A          177 IKHLHSAGIIHRDLKPSNIVVKSD-----CTLKILDFGLARTAGTSFM------MTPYVVTRYYRAPEVILGMG------  239 (464)
T ss_dssp             HHHHHHTTCCCCCCCGGGEEECTT-----SCEEECCCCCC-----CCC------C----CCCTTCCHHHHTTCC------
T ss_pred             HHHHHHCCcccCCCChHhEEEeCC-----CCEEEEEEEeeeecCCCcc------cCCCcccccccCHHHHcCCC------
Confidence            999999999999999999999988     8999999999987654221      12467999999999998764      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCccccccccccc------------------------cccCC---------CCC----
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV------------------------NALPQ---------LNT----  475 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~------------------------~~~~~---------~~~----  475 (588)
                      ++.++||||+||++|||++|+.||.+......+..                        ...+.         ++.    
T Consensus       240 ~~~~~DiwSlG~il~ell~g~~pF~g~~~~~~~~~i~~~lg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (464)
T 3ttj_A          240 YKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFP  319 (464)
T ss_dssp             CCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHTTSCHHHHHHHTTSCCCCCCCHHHHSCGGGSC
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHcchhhhhHhhcccccCCCChHHhCcccccc
Confidence            55789999999999999999999976321100000                        00000         000    


Q ss_pred             -------CccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCcccc
Q psy4039         476 -------NVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLY  518 (588)
Q Consensus       476 -------~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~  518 (588)
                             ..++++++||.+||+.||++|||++|+++         |||++
T Consensus       320 ~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~---------Hp~~~  360 (464)
T 3ttj_A          320 ADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQ---------HPYIN  360 (464)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHT---------STTTG
T ss_pred             cccccccccCHHHHHHHHHHcCCChhhCCCHHHHhc---------Chhhh
Confidence                   01567999999999999999999999999         99997

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=100.00  E-value=9.2e-45  Score=371.58  Aligned_cols=274  Identities=21%  Similarity=0.273  Sum_probs=201.1

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhh---------hcccccchhhhHH
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKE---------LLPLRKPLRLNED  259 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e---------~~~~~~~~~~~Ei  259 (588)
                      ..+.+++|++.+.||+|+||.||+|.+.  ++.||||++.................+.         ......+.+.+|+
T Consensus         8 ~~~~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~   87 (298)
T 2zv2_A            8 DCVQLNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEI   87 (298)
T ss_dssp             --CEETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHH
T ss_pred             CceeecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHH
Confidence            3455689999999999999999999986  8899999996543221100000000000         0011235577899


Q ss_pred             HHHhhhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCC
Q psy4039         260 MLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLS  338 (588)
Q Consensus       260 ~il~~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~  338 (588)
                      .+++.+    +||||+++++++.+..                          ...+++||||+ +++|.+++..  ..++
T Consensus        88 ~~l~~l----~h~~iv~~~~~~~~~~--------------------------~~~~~lv~e~~~~~~l~~~~~~--~~~~  135 (298)
T 2zv2_A           88 AILKKL----DHPNVVKLVEVLDDPN--------------------------EDHLYMVFELVNQGPVMEVPTL--KPLS  135 (298)
T ss_dssp             HHHHTC----CCTTBCCEEEEEECSS--------------------------SSEEEEEEECCTTCBSCCSSCS--SCCC
T ss_pred             HHHHhC----CCCCCCeEEEEEEcCC--------------------------CCEEEEEEecCCCCcHHHHhhc--CCCC
Confidence            999987    8999999999987621                          22589999999 5788776543  3799


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccc
Q psy4039         339 MHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMA  418 (588)
Q Consensus       339 ~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~A  418 (588)
                      +.++..++.||+.||.|||++||+||||||+|||++.+     +.+||+|||+++........     .....||+.|+|
T Consensus       136 ~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~-----~~~kl~Dfg~~~~~~~~~~~-----~~~~~gt~~y~a  205 (298)
T 2zv2_A          136 EDQARFYFQDLIKGIEYLHYQKIIHRDIKPSNLLVGED-----GHIKIADFGVSNEFKGSDAL-----LSNTVGTPAFMA  205 (298)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTT-----SCEEECCCTTCEECSSSSCE-----ECCCCSCGGGCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEECCC-----CCEEEecCCCcccccccccc-----ccCCcCCccccC
Confidence            99999999999999999999999999999999999987     79999999999876542211     124579999999


Q ss_pred             hhHHhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccccc----ccccCCCCCCccHHHHHHHHHhhhhCCC
Q psy4039         419 PEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE----VNALPQLNTNVPEVMRRLVAKLLENDPS  494 (588)
Q Consensus       419 PE~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~----~~~~~~~~~~~~~~l~~Li~~~L~~dP~  494 (588)
                      ||++.+....+   .+.++|||||||++|||++|..||..........    .....+....++++++++|.+||+.||+
T Consensus       206 PE~~~~~~~~~---~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~  282 (298)
T 2zv2_A          206 PESLSETRKIF---SGKALDVWAMGVTLYCFVFGQCPFMDERIMCLHSKIKSQALEFPDQPDIAEDLKDLITRMLDKNPE  282 (298)
T ss_dssp             GGGCCTTCCCE---ESHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCSSSCCCHHHHHHHHHHTCSCTT
T ss_pred             hhhhccCCCCC---CCchhhhHhHHHHHHHHHHCCCCCCCccHHHHHHHHhcccCCCCCccccCHHHHHHHHHHhhcChh
Confidence            99987654211   2356899999999999999999997642211110    1111122356899999999999999999


Q ss_pred             CCCCHHHHHHHHhhhhhcCCcccc
Q psy4039         495 DRPSAELAATVCQLYLWAPKHWLY  518 (588)
Q Consensus       495 ~Rps~~e~l~~L~~~~~~~h~w~~  518 (588)
                      +|||++++++         |||++
T Consensus       283 ~R~s~~e~l~---------hp~~~  297 (298)
T 2zv2_A          283 SRIVVPEIKL---------HPWVT  297 (298)
T ss_dssp             TSCCHHHHTT---------CHHHH
T ss_pred             hCCCHHHHhc---------Ccccc
Confidence            9999999988         99985

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=100.00  E-value=1.2e-44  Score=376.22  Aligned_cols=253  Identities=21%  Similarity=0.247  Sum_probs=202.9

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||+||+|.+.  ++.||||++......                ...+.+.+|+.+++.+    +|||
T Consensus         7 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~----------------~~~~~~~~E~~~l~~l----~hpn   66 (323)
T 3tki_A            7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAV----------------DCPENIKKEICINKML----NHEN   66 (323)
T ss_dssp             TCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-----------------------CHHHHHHHHHHC----CCTT
T ss_pred             hhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEccccc----------------chHHHHHHHHHHHHhC----CCCC
Confidence            89999999999999999999987  889999998532211                0224567799999987    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++++.+..                            ..|+||||+ +|+|.+++.... .+++.++..++.||+.|
T Consensus        67 Iv~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~a  117 (323)
T 3tki_A           67 VVKFYGHRREGN----------------------------IQYLFLEYCSGGELFDRIEPDI-GMPEPDAQRFFHQLMAG  117 (323)
T ss_dssp             BCCEEEEEECSS----------------------------EEEEEEECCTTEEGGGGSBTTT-BCCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEecCC----------------------------eEEEEEEcCCCCcHHHHHhhcC-CCCHHHHHHHHHHHHHH
Confidence            999999988632                            489999999 579999987553 79999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||++||+||||||+|||++.+     +.+||+|||+++.........   .....+||+.|+|||++.+...     
T Consensus       118 L~~LH~~givH~Dlkp~NIll~~~-----~~~kl~Dfg~a~~~~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~-----  184 (323)
T 3tki_A          118 VVYLHGIGITHRDIKPENLLLDER-----DNLKISDFGLATVFRYNNRER---LLNKMCGTLPYVAPELLKRREF-----  184 (323)
T ss_dssp             HHHHHHTTEECSCCSGGGEEECTT-----CCEEECCCTTCEECEETTEEC---CBCSCCSCGGGSCHHHHHCSSB-----
T ss_pred             HHHHHHCCccccccchHHEEEeCC-----CCEEEEEeeccceeccCCccc---ccCCCccCcCccCcHHhccCCC-----
Confidence            999999999999999999999987     799999999998654322111   1124679999999999976542     


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcccccccc-c----cccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHh
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD-Y----EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~-~----~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~  507 (588)
                      ++.++|||||||++|||++|+.||........ +    ........+..+++++.+||.+||+.||.+|||++|+++   
T Consensus       185 ~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~eil~---  261 (323)
T 3tki_A          185 HAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPLALLHKILVENPSARITIPDIKK---  261 (323)
T ss_dssp             CHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHHHHHHHTTCTTSTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT---
T ss_pred             CCCcccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHhcccccCCccccCCHHHHHHHHHHccCChhhCcCHHHHhh---
Confidence            23579999999999999999999976432211 0    111111223568899999999999999999999999988   


Q ss_pred             hhhhcCCccccC
Q psy4039         508 LYLWAPKHWLYG  519 (588)
Q Consensus       508 ~~~~~~h~w~~~  519 (588)
                            |||++.
T Consensus       262 ------h~~~~~  267 (323)
T 3tki_A          262 ------DRWYNK  267 (323)
T ss_dssp             ------CTTTTC
T ss_pred             ------Chhhcc
Confidence                  999974

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=100.00  E-value=2.2e-44  Score=374.85  Aligned_cols=262  Identities=21%  Similarity=0.261  Sum_probs=197.5

Q ss_pred             ccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCC
Q psy4039         192 DVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLP  269 (588)
Q Consensus       192 ~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~  269 (588)
                      ...+++|++.+.||+|+||+||+|.+.  ++.||||++.......               .....+.+|+.+++.+    
T Consensus        30 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~---------------~~~~~~~~E~~~l~~l----   90 (329)
T 3gbz_A           30 ATSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEE---------------GVPGTAIREVSLLKEL----   90 (329)
T ss_dssp             --CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC-----------------------CHHHHHHGGGC----
T ss_pred             ccchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEccccccc---------------ccchhHHHHHHHHHHc----
Confidence            344589999999999999999999886  8899999985422111               1233456799999987    


Q ss_pred             CCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4039         270 PHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQL  349 (588)
Q Consensus       270 ~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql  349 (588)
                      +||||+++++++.+..                            .+++||||++|+|.+++.... .+++..++.++.||
T Consensus        91 ~h~~iv~~~~~~~~~~----------------------------~~~lv~e~~~~~L~~~~~~~~-~~~~~~~~~i~~ql  141 (329)
T 3gbz_A           91 QHRNIIELKSVIHHNH----------------------------RLHLIFEYAENDLKKYMDKNP-DVSMRVIKSFLYQL  141 (329)
T ss_dssp             CCTTBCCEEEEEEETT----------------------------EEEEEEECCSEEHHHHHHHCT-TCCHHHHHHHHHHH
T ss_pred             CCCCcceEEEEEecCC----------------------------EEEEEEecCCCCHHHHHhhcC-CCCHHHHHHHHHHH
Confidence            8999999999998732                            499999999999999998765 79999999999999


Q ss_pred             HHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCc
Q psy4039         350 LEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF  429 (588)
Q Consensus       350 ~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~  429 (588)
                      +.||.|||++||+||||||+|||++.+.....+.+||+|||+|+........     .....||+.|+|||++.+...  
T Consensus       142 ~~~l~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~~~~~~~~~-----~~~~~~t~~y~aPE~~~~~~~--  214 (329)
T 3gbz_A          142 INGVNFCHSRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLARAFGIPIRQ-----FTHEIITLWYRPPEILLGSRH--  214 (329)
T ss_dssp             HHHHHHHHHTTCCCSCCCGGGEEEEC-----CCEEEECCTTHHHHHC----------------CCTTCCHHHHTTCCC--
T ss_pred             HHHHHHHHhCCEECCCCCHHHEEEecCCCCccceEEECcCCCccccCCcccc-----cCCCcCCccccCHHHhcCCCC--
Confidence            9999999999999999999999997553222267999999999876432111     124568999999999976431  


Q ss_pred             cCCCCCcCchhhHHHHHHHHhcCCCCCccccccccccc----------------c-------ccCC---------CCCCc
Q psy4039         430 SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV----------------N-------ALPQ---------LNTNV  477 (588)
Q Consensus       430 ~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~----------------~-------~~~~---------~~~~~  477 (588)
                         ++.++|||||||++|||++|..||.+.........                .       ..+.         ++..+
T Consensus       215 ---~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (329)
T 3gbz_A          215 ---YSTSVDIWSIACIWAEMLMKTPLFPGDSEIDQLFKIFEVLGLPDDTTWPGVTALPDWKQSFPKFRGKTLKRVLGALL  291 (329)
T ss_dssp             ---CCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCHHHHHGGGS
T ss_pred             ---CCcHHHHHHHHHHHHHHHHCCCCcCCCCHHHHHHHHHHHhCCCchhhhhhhhhhhhhhhhhhhhccccHhhhccccc
Confidence               45789999999999999999999976321110000                0       0000         01126


Q ss_pred             cHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccCC
Q psy4039         478 PEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGA  520 (588)
Q Consensus       478 ~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~  520 (588)
                      ++++.+||.+||+.||.+|||++++++         ||||+..
T Consensus       292 ~~~~~~li~~~L~~dP~~R~t~~e~l~---------hp~f~~~  325 (329)
T 3gbz_A          292 DDEGLDLLTAMLEMDPVKRISAKNALE---------HPYFSHN  325 (329)
T ss_dssp             CHHHHHHHHHHTCSSGGGSCCHHHHHT---------SGGGSSS
T ss_pred             CHHHHHHHHHHccCChhhCCCHHHHhC---------CcccCCC
Confidence            789999999999999999999999999         9999843

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=100.00  E-value=3.3e-44  Score=363.67  Aligned_cols=254  Identities=24%  Similarity=0.387  Sum_probs=206.3

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCC
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENL  268 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l  268 (588)
                      ..+.+++|++.+.||+|+||.||+|.+.  +..||||++....           ...   ......+.+|+.+++.+   
T Consensus         4 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-----------~~~---~~~~~~~~~e~~~l~~l---   66 (279)
T 3fdn_A            4 RQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQ-----------LEK---AGVEHQLRREVEIQSHL---   66 (279)
T ss_dssp             CCCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHH-----------HHH---HTCHHHHHHHHHHHTTC---
T ss_pred             ceeecccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccc-----------cch---hhHHHHHHHHHHHHHcC---
Confidence            3566799999999999999999999987  6789999985311           000   11234567799999887   


Q ss_pred             CCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHH
Q psy4039         269 PPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFT  347 (588)
Q Consensus       269 ~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~  347 (588)
                       +||||+++++++.+..                            ..++||||+ +++|.+++.... .+++..+..++.
T Consensus        67 -~h~~i~~~~~~~~~~~----------------------------~~~lv~e~~~~~~l~~~l~~~~-~~~~~~~~~~~~  116 (279)
T 3fdn_A           67 -RHPNILRLYGYFHDAT----------------------------RVYLILEYAPLGTVYRELQKLS-KFDEQRTATYIT  116 (279)
T ss_dssp             -CCTTBCCEEEEEECSS----------------------------EEEEEECCCTTEEHHHHHHHHS-SCCHHHHHHHHH
T ss_pred             -CCCCCcchhheEecCC----------------------------EEEEEEecCCCCcHHHHHHhcC-CCCHHHHHHHHH
Confidence             8999999999987632                            489999999 479999998764 799999999999


Q ss_pred             HHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCC
Q psy4039         348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG  427 (588)
Q Consensus       348 ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~  427 (588)
                      |++.||.|||++||+||||||+|||++.+     +.+||+|||++........       ....||+.|+|||++.+.. 
T Consensus       117 qi~~~l~~LH~~~i~H~dlkp~Nili~~~-----~~~~l~Dfg~~~~~~~~~~-------~~~~~~~~y~aPE~~~~~~-  183 (279)
T 3fdn_A          117 ELANALSYCHSKRVIHRDIKPENLLLGSA-----GELKIADFGWSVHAPSSRR-------TDLCGTLDYLPPEMIEGRM-  183 (279)
T ss_dssp             HHHHHHHHHHTTTCEECCCCGGGEEECTT-----SCEEECSCCEESCC---------------CCCCTTCCHHHHTTCC-
T ss_pred             HHHHHHHHHHhCCEecccCChHhEEEcCC-----CCEEEEeccccccCCcccc-------cccCCCCCccCHhHhccCC-
Confidence            99999999999999999999999999987     7999999999865433211       2457999999999997654 


Q ss_pred             CccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccccc--ccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHH
Q psy4039         428 LFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATV  505 (588)
Q Consensus       428 ~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~--~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~  505 (588)
                           .+.++||||||+++|||++|..||..........  ......++..+++++.+||.+||+.||.+|||++++++ 
T Consensus       184 -----~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~-  257 (279)
T 3fdn_A          184 -----HDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLE-  257 (279)
T ss_dssp             -----CCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCCCTTSCHHHHHHHHHHCCSSGGGSCCHHHHHH-
T ss_pred             -----CCccchhHhHHHHHHHHHHCCCCCCCCcHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHhccChhhCCCHHHHhh-
Confidence                 4578999999999999999999997643222211  12233456778999999999999999999999999999 


Q ss_pred             HhhhhhcCCcccc
Q psy4039         506 CQLYLWAPKHWLY  518 (588)
Q Consensus       506 L~~~~~~~h~w~~  518 (588)
                              |||++
T Consensus       258 --------h~~~~  262 (279)
T 3fdn_A          258 --------HPWIT  262 (279)
T ss_dssp             --------CHHHH
T ss_pred             --------Ccccc
Confidence                    99998

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=100.00  E-value=6.7e-44  Score=377.87  Aligned_cols=261  Identities=22%  Similarity=0.270  Sum_probs=210.3

Q ss_pred             CccccccCCeEEeeeecccCceeEEEEEEC---------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHH
Q psy4039         189 DVDDVKVDDIQIGKFIAKGTNAVVYEATFR---------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNED  259 (588)
Q Consensus       189 ~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~---------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei  259 (588)
                      ..+++..++|++++.||+|+||.||+|.+.         +..||||++....   ..             ...+.+.+|+
T Consensus        74 ~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~---~~-------------~~~~~~~~E~  137 (370)
T 2psq_A           74 PKWEFPRDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDA---TE-------------KDLSDLVSEM  137 (370)
T ss_dssp             TTTBCCGGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTC---BH-------------HHHHHHHHHH
T ss_pred             ccccccHHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCc---CH-------------HHHHHHHHHH
Confidence            446677799999999999999999999873         4579999985321   10             0123466799


Q ss_pred             HHHhhhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc----
Q psy4039         260 MLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC----  334 (588)
Q Consensus       260 ~il~~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~----  334 (588)
                      .+++.+   .+|||||+++++|.+..                            .+|+||||+ +|+|.+++....    
T Consensus       138 ~~l~~l---~~hpnIv~~~~~~~~~~----------------------------~~~lv~e~~~~g~L~~~l~~~~~~~~  186 (370)
T 2psq_A          138 EMMKMI---GKHKNIINLLGACTQDG----------------------------PLYVIVEYASKGNLREYLRARRPPGM  186 (370)
T ss_dssp             HHHHHS---CCCTTBCCEEEEECSSS----------------------------SCEEEEECCTTCBHHHHHHHTCCC--
T ss_pred             HHHHHh---cCCCCEeeEEEEEccCC----------------------------CEEEEEEcCCCCCHHHHHHhhCCccc
Confidence            999887   47999999999987632                            389999999 579999998753    


Q ss_pred             -----------CCCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCcccc
Q psy4039         335 -----------AQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQY  403 (588)
Q Consensus       335 -----------~~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~  403 (588)
                                 ..+++.+++.++.||+.||.|||++||+||||||+|||++.+     +.+||+|||+|+......... 
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~-----~~~kl~DFG~a~~~~~~~~~~-  260 (370)
T 2psq_A          187 EYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTEN-----NVMKIADFGLARDINNIDYYK-  260 (370)
T ss_dssp             ---------CCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTT-----CCEEECCCSSCEETTCCCTTC-
T ss_pred             cccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCeeccccchhhEEECCC-----CCEEEccccCCcccCccccee-
Confidence                       248999999999999999999999999999999999999987     899999999998765432211 


Q ss_pred             ccccccccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCccccccccc---cccccCCCCCCccH
Q psy4039         404 SSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTDY---EVNALPQLNTNVPE  479 (588)
Q Consensus       404 ~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~~---~~~~~~~~~~~~~~  479 (588)
                        ......||+.|+|||++.+..      ++.++|||||||++|||++ |..||.+.......   .....+..+..+++
T Consensus       261 --~~~~~~~t~~y~aPE~~~~~~------~~~~~DvwslG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (370)
T 2psq_A          261 --KTTNGRLPVKWMAPEALFDRV------YTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPANCTN  332 (370)
T ss_dssp             --TTTTTTSCGGGCCHHHHHTCC------CCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTCCCCCCTTSCH
T ss_pred             --cccCCCcccceECHhHhcCCC------CCcHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCCH
Confidence              112456789999999998765      4578999999999999999 99999764332221   22334556778999


Q ss_pred             HHHHHHHHhhhhCCCCCCCHHHHHHHHhhhh
Q psy4039         480 VMRRLVAKLLENDPSDRPSAELAATVCQLYL  510 (588)
Q Consensus       480 ~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~  510 (588)
                      ++.++|.+||+.||.+|||++++++.|+..+
T Consensus       333 ~l~~li~~~l~~dP~~Rpt~~ell~~L~~il  363 (370)
T 2psq_A          333 ELYMMMRDCWHAVPSQRPTFKQLVEDLDRIL  363 (370)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence            9999999999999999999999999887654

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=100.00  E-value=2.8e-44  Score=389.87  Aligned_cols=259  Identities=22%  Similarity=0.310  Sum_probs=202.8

Q ss_pred             ccccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcC
Q psy4039         190 VDDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVEN  267 (588)
Q Consensus       190 ~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~  267 (588)
                      ...+..++|++.+.||+|+||.||+|.+.  ++.||||++.......              ......+.+|+.+++.+  
T Consensus       142 ~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~--------------~~~~~~~~~e~~~l~~l--  205 (446)
T 4ejn_A          142 KHRVTMNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVA--------------KDEVAHTLTENRVLQNS--  205 (446)
T ss_dssp             --CCCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC---------------------------CCCCC--
T ss_pred             ccCCChHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhh--------------hHHHHHHHHHHHHHHhC--
Confidence            34566789999999999999999999987  7899999995311000              01223445688888776  


Q ss_pred             CCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHH
Q psy4039         268 LPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLF  346 (588)
Q Consensus       268 l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~  346 (588)
                        +||||++++++|.+..                            .+++||||+ +|+|.+++.... .+++..+..++
T Consensus       206 --~h~~iv~l~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~  254 (446)
T 4ejn_A          206 --RHPFLTALKYSFQTHD----------------------------RLCFVMEYANGGELFFHLSRER-VFSEDRARFYG  254 (446)
T ss_dssp             --SCTTSCCEEEEEEETT----------------------------EEEEEECCCSSCBHHHHHHHHS-CCCHHHHHHHH
T ss_pred             --CCCeEeeEEEEEeeCC----------------------------EEEEEEeeCCCCcHHHHHHhcC-CCCHHHHHHHH
Confidence              8999999999998732                            499999999 579999998765 89999999999


Q ss_pred             HHHHHHHHHHHh-CCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcC
Q psy4039         347 TQLLEGVTHLNM-HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALAT  425 (588)
Q Consensus       347 ~ql~~gL~yLH~-~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~  425 (588)
                      .||+.||.|||+ +||+||||||+|||++.+     +.+||+|||+|+.......     .....+||+.|+|||++.+.
T Consensus       255 ~qi~~aL~~LH~~~giiHrDlkp~NIll~~~-----~~~kl~DFG~a~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~  324 (446)
T 4ejn_A          255 AEIVSALDYLHSEKNVVYRDLKLENLMLDKD-----GHIKITDFGLCKEGIKDGA-----TMKTFCGTPEYLAPEVLEDN  324 (446)
T ss_dssp             HHHHHHHHHHHHHTCCCCCCCCGGGEEECSS-----SCEEECCCCCCCTTCC----------CCSSSCGGGCCHHHHHTS
T ss_pred             HHHHHHHHHHhhcCCEEECCCCHHHEEECCC-----CCEEEccCCCceeccCCCc-----ccccccCCccccCHhhcCCC
Confidence            999999999998 999999999999999988     8999999999976433211     11246799999999999776


Q ss_pred             CCCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccccc--ccccCCCCCCccHHHHHHHHHhhhhCCCCCC-----C
Q psy4039         426 PGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVAKLLENDPSDRP-----S  498 (588)
Q Consensus       426 ~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~--~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rp-----s  498 (588)
                      .      ++.++|||||||++|||++|+.||.+........  ......++..+++++++||.+||+.||.+||     +
T Consensus       325 ~------~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~t  398 (446)
T 4ejn_A          325 D------YGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRFPRTLGPEAKSLLSGLLKKDPKQRLGGGSED  398 (446)
T ss_dssp             C------CCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSTTTSTTCSTTT
T ss_pred             C------CCCccchhhhHHHHHHHhhCCCCCCCCCHHHHHHHHHhCCCCCCccCCHHHHHHHHHHcccCHHHhCCCCCCC
Confidence            5      4578999999999999999999997743322211  1223346678999999999999999999999     9


Q ss_pred             HHHHHHHHhhhhhcCCccccCC
Q psy4039         499 AELAATVCQLYLWAPKHWLYGA  520 (588)
Q Consensus       499 ~~e~l~~L~~~~~~~h~w~~~~  520 (588)
                      ++++++         |||++..
T Consensus       399 ~~ell~---------hp~f~~~  411 (446)
T 4ejn_A          399 AKEIMQ---------HRFFAGI  411 (446)
T ss_dssp             HHHHHT---------SGGGTTC
T ss_pred             HHHHHh---------CccccCC
Confidence            999998         9999743

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=100.00  E-value=6.2e-44  Score=376.88  Aligned_cols=255  Identities=26%  Similarity=0.302  Sum_probs=196.0

Q ss_pred             cccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCC
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPP  270 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~  270 (588)
                      ...++|++.+.||+|+||+||+|.+.  ++.||||++.....                  ....+.+|+.+++.+    +
T Consensus        17 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~------------------~~~~~~~E~~~l~~l----~   74 (361)
T 3uc3_A           17 HDSDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAA------------------IDENVQREIINHRSL----R   74 (361)
T ss_dssp             CCTTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTT------------------SCHHHHHHHHHHHHC----C
T ss_pred             CCCCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCcc------------------ccHHHHHHHHHHHhC----C
Confidence            34588999999999999999999997  88999999954221                  223456799999987    8


Q ss_pred             CCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4039         271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQL  349 (588)
Q Consensus       271 HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql  349 (588)
                      |||||++++++.+..                            .+++||||+ +|+|.+++...+ .+++..++.++.|+
T Consensus        75 hpniv~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~ql  125 (361)
T 3uc3_A           75 HPNIVRFKEVILTPT----------------------------HLAIIMEYASGGELYERICNAG-RFSEDEARFFFQQL  125 (361)
T ss_dssp             CTTBCCEEEEEECSS----------------------------EEEEEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEeeCC----------------------------EEEEEEEeCCCCCHHHHHHhcC-CCCHHHHHHHHHHH
Confidence            999999999998632                            499999999 689999998765 79999999999999


Q ss_pred             HHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCc
Q psy4039         350 LEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF  429 (588)
Q Consensus       350 ~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~  429 (588)
                      +.||.|||++||+||||||+|||++.+..   +.+||+|||+|+.......      .....||+.|+|||++.+...  
T Consensus       126 ~~~L~~LH~~~ivH~Dlkp~Nill~~~~~---~~~kl~Dfg~a~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~--  194 (361)
T 3uc3_A          126 LSGVSYCHSMQICHRDLKLENTLLDGSPA---PRLKICDFGYSKSSVLHSQ------PKSTVGTPAYIAPEVLLRQEY--  194 (361)
T ss_dssp             HHHHHHHHHTTCCSCCCCGGGEEECSSSS---CCEEECCCCCC---------------------CTTSCHHHHHCSSC--
T ss_pred             HHHHHHHHHCCcccCCCCHHHEEEcCCCC---ceEEEeecCccccccccCC------CCCCcCCCCcCChhhhcCCCC--
Confidence            99999999999999999999999986622   4599999999975332111      124579999999999976642  


Q ss_pred             cCCCCCcCchhhHHHHHHHHhcCCCCCcccccccccc--------ccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHH
Q psy4039         430 SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--------VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAEL  501 (588)
Q Consensus       430 ~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~--------~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e  501 (588)
                         .+.++|||||||++|||++|+.||.+......+.        .....+....+++++++||.+||+.||.+|||+++
T Consensus       195 ---~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~e  271 (361)
T 3uc3_A          195 ---DGKIADVWSCGVTLYVMLVGAYPFEDPEEPRDYRKTIQRILSVKYSIPDDIRISPECCHLISRIFVADPATRISIPE  271 (361)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHSSCSCC----CCCHHHHHHHHHTTCCCCCTTSCCCHHHHHHHHHHSCSCTTTSCCHHH
T ss_pred             ---CCCeeeeehhHHHHHHHHhCCCCCCCCccHHHHHHHHHHHhcCCCCCCCcCCCCHHHHHHHHHHccCChhHCcCHHH
Confidence               1234899999999999999999997643221111        11111223367899999999999999999999999


Q ss_pred             HHHHHhhhhhcCCccccCCC
Q psy4039         502 AATVCQLYLWAPKHWLYGAT  521 (588)
Q Consensus       502 ~l~~L~~~~~~~h~w~~~~~  521 (588)
                      +++         |||+....
T Consensus       272 ll~---------hp~f~~~~  282 (361)
T 3uc3_A          272 IKT---------HSWFLKNL  282 (361)
T ss_dssp             HHT---------SHHHHTTC
T ss_pred             HHh---------CcchhcCC
Confidence            999         99997443

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=100.00  E-value=3.5e-44  Score=382.80  Aligned_cols=265  Identities=21%  Similarity=0.227  Sum_probs=202.8

Q ss_pred             cccCCeEEeeeecccCceeEEEEEEC-CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCC
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPH  271 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~-g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~H  271 (588)
                      +.-++|++.+.||+|+||.||+|.+. ++.||||++.......   .            ....+.+|+.+++.+..  .|
T Consensus        53 ~~~~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~---~------------~~~~~~~Ei~~l~~l~~--~~  115 (390)
T 2zmd_A           53 VKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADN---Q------------TLDSYRNEIAYLNKLQQ--HS  115 (390)
T ss_dssp             ETTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCH---H------------HHHHHHHHHHHHHHHTT--TC
T ss_pred             ccCCceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccH---H------------HHHHHHHHHHHHHHccc--CC
Confidence            34456999999999999999999887 7889999996432211   0            22346679999998821  26


Q ss_pred             CceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4039         272 PNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLE  351 (588)
Q Consensus       272 pNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~  351 (588)
                      ||||++++++....                            .+|+|||+.+++|.+++.... .+++.++..++.||+.
T Consensus       116 ~~iv~~~~~~~~~~----------------------------~~~lv~E~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~  166 (390)
T 2zmd_A          116 DKIIRLYDYEITDQ----------------------------YIYMVMECGNIDLNSWLKKKK-SIDPWERKSYWKNMLE  166 (390)
T ss_dssp             TTBCCEEEEEECSS----------------------------EEEEEEECCSEEHHHHHHHCS-SCCHHHHHHHHHHHHH
T ss_pred             CeEEEEEEEEecCC----------------------------EEEEEEecCCCCHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence            99999999987632                            499999977899999998765 8999999999999999


Q ss_pred             HHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCC---
Q psy4039         352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGL---  428 (588)
Q Consensus       352 gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~---  428 (588)
                      ||.|||++||+||||||+|||++ +     +.+||+|||+++.........   .....+||+.|+|||++.+....   
T Consensus       167 aL~~lH~~~ivHrDlkp~NIll~-~-----~~~kl~DFG~a~~~~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~  237 (390)
T 2zmd_A          167 AVHTIHQHGIVHSDLKPANFLIV-D-----GMLKLIDFGIANQMQPDTTSV---VKDSQVGAVNYMPPEAIKDMSSSREN  237 (390)
T ss_dssp             HHHHHHTTTCCCCCCCGGGEEES-S-----SCEEECCCSSSCCC------------CCSCCCGGGCCHHHHHCC------
T ss_pred             HHHHHHHCCeeecCCCHHHEEEE-C-----CeEEEEecCccccccCCCccc---cCCCCCcCCCccChHHhhhccccccc
Confidence            99999999999999999999995 3     589999999998765422111   11246799999999999753110   


Q ss_pred             --ccCCCCCcCchhhHHHHHHHHhcCCCCCccccccc-----cccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHH
Q psy4039         429 --FSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNT-----DYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAEL  501 (588)
Q Consensus       429 --~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~-----~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e  501 (588)
                        ....++.++|||||||++|||++|+.||.......     .........++...++++++||.+||+.||.+|||+++
T Consensus       238 ~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e  317 (390)
T 2zmd_A          238 GKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPE  317 (390)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHCTTSCCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHH
T ss_pred             cccccCCCChhhHHHHHHHHHHHHHCCCcchhhhHHHHHHHHHhCccccCCCCccchHHHHHHHHHHcccChhhCCCHHH
Confidence              01124568999999999999999999997632211     01112223445667899999999999999999999999


Q ss_pred             HHHHHhhhhhcCCccccCCC
Q psy4039         502 AATVCQLYLWAPKHWLYGAT  521 (588)
Q Consensus       502 ~l~~L~~~~~~~h~w~~~~~  521 (588)
                      +++         |||++...
T Consensus       318 ll~---------hp~~~~~~  328 (390)
T 2zmd_A          318 LLA---------HPYVQIQT  328 (390)
T ss_dssp             HHT---------SHHHHSCC
T ss_pred             Hhh---------CcCccccC
Confidence            999         99998443

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=9.8e-44  Score=376.19  Aligned_cols=259  Identities=22%  Similarity=0.243  Sum_probs=201.0

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCC
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENL  268 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l  268 (588)
                      +++. ++|++.+.||+|+||.||+|.+.  |+.||||++....   ....            ..+.+.+|+.+++.+   
T Consensus        21 ~~~~-~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~---~~~~------------~~~~~~~E~~~l~~l---   81 (367)
T 1cm8_A           21 WEVR-AVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPF---QSEL------------FAKRAYRELRLLKHM---   81 (367)
T ss_dssp             ECCB-SSEEEEEEC------CEEEEEETTTCCEEEEEECSSTT---SSHH------------HHHHHHHHHHHHHHC---
T ss_pred             eeec-ceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccc---cCHH------------HHHHHHHHHHHHHhC---
Confidence            3443 88999999999999999999986  8899999984321   1110            123456799999998   


Q ss_pred             CCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHH
Q psy4039         269 PPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQ  348 (588)
Q Consensus       269 ~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~q  348 (588)
                       +||||+++++++.....                      ......+|+||||++++|.+++...  .+++..+..++.|
T Consensus        82 -~hpnIv~l~~~~~~~~~----------------------~~~~~~~~lv~e~~~~~L~~~~~~~--~l~~~~~~~~~~q  136 (367)
T 1cm8_A           82 -RHENVIGLLDVFTPDET----------------------LDDFTDFYLVMPFMGTDLGKLMKHE--KLGEDRIQFLVYQ  136 (367)
T ss_dssp             -CBTTBCCCSEEECSCSS----------------------TTTCCCCEEEEECCSEEHHHHHHHC--CCCHHHHHHHHHH
T ss_pred             -CCcCCCCceeeEecCCc----------------------cccCceEEEEEecCCCCHHHHHhcC--CCCHHHHHHHHHH
Confidence             89999999999876321                      1112247999999999999999874  8999999999999


Q ss_pred             HHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCC
Q psy4039         349 LLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGL  428 (588)
Q Consensus       349 l~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~  428 (588)
                      |+.||.|||++||+||||||+|||++.+     +.+||+|||+++.....        ....+||+.|+|||++.+... 
T Consensus       137 i~~~L~~LH~~~ivH~Dlkp~NIll~~~-----~~~kl~Dfg~a~~~~~~--------~~~~~~t~~y~aPE~~~~~~~-  202 (367)
T 1cm8_A          137 MLKGLRYIHAAGIIHRDLKPGNLAVNED-----CELKILDFGLARQADSE--------MTGYVVTRWYRAPEVILNWMR-  202 (367)
T ss_dssp             HHHHHHHHHHTTEECCCCCGGGEEECTT-----CCEEECCCTTCEECCSS--------CCSSCSCGGGCCTHHHHTTTC-
T ss_pred             HHHHHHHHHHCCccccCcCHHHEEEcCC-----CCEEEEeeecccccccc--------cCcCcCCCCcCCHHHHhCCCC-
Confidence            9999999999999999999999999987     89999999999875432        124678999999999976321 


Q ss_pred             ccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccc---------------------------------cccccCCCCC
Q psy4039         429 FSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY---------------------------------EVNALPQLNT  475 (588)
Q Consensus       429 ~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~---------------------------------~~~~~~~~~~  475 (588)
                          ++.++||||+||++|||++|+.||.+.......                                 ..........
T Consensus       203 ----~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (367)
T 1cm8_A          203 ----YTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILT  278 (367)
T ss_dssp             ----CCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTCSCHHHHHHHHHSCCCCCCCGGGTCT
T ss_pred             ----CChhhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHhhhHHHHHHHHhCCCCCCCCHHHHCC
Confidence                457899999999999999999999763211000                                 0011123345


Q ss_pred             CccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccCC
Q psy4039         476 NVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGA  520 (588)
Q Consensus       476 ~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~  520 (588)
                      .+++++.+|+.+||+.||.+|||++++++         |||++..
T Consensus       279 ~~~~~~~~ll~~mL~~dP~~R~t~~e~l~---------hp~f~~~  314 (367)
T 1cm8_A          279 NASPLAVNLLEKMLVLDAEQRVTAGEALA---------HPYFESL  314 (367)
T ss_dssp             TCCHHHHHHHHHHSCSSTTTSCCHHHHHH---------SGGGTTT
T ss_pred             CCCHHHHHHHHHHccCChhHCCCHHHHhc---------ChHHHhh
Confidence            67899999999999999999999999999         9999844

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=100.00  E-value=3.5e-44  Score=382.45  Aligned_cols=253  Identities=22%  Similarity=0.318  Sum_probs=206.5

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      .++|++.+.||+|+||.||+|.+.  ++.||+|++.....                 .....+.+|+.+++.+    +||
T Consensus        50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~-----------------~~~~~~~~E~~il~~l----~hp  108 (387)
T 1kob_A           50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYP-----------------LDKYTVKNEISIMNQL----HHP  108 (387)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSH-----------------HHHHHHHHHHHHHTTC----CST
T ss_pred             ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccch-----------------hhHHHHHHHHHHHHhC----CCc
Confidence            478999999999999999999997  78999999853210                 0123456799999887    899


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLE  351 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~  351 (588)
                      |||++++++.+..                            .+++||||+ +|+|.+++......+++.+++.++.||+.
T Consensus       109 nIv~~~~~~~~~~----------------------------~~~lv~E~~~gg~L~~~l~~~~~~l~~~~~~~i~~qi~~  160 (387)
T 1kob_A          109 KLINLHDAFEDKY----------------------------EMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACE  160 (387)
T ss_dssp             TBCCEEEEEECSS----------------------------EEEEEEECCCCCBHHHHTTCTTCCBCHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEEeCC----------------------------EEEEEEEcCCCCcHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence            9999999997632                            499999999 67999999866557999999999999999


Q ss_pred             HHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccC
Q psy4039         352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF  431 (588)
Q Consensus       352 gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~  431 (588)
                      ||.|||++||+||||||+|||++.+..   +.+||+|||+++........      ...+||+.|+|||++.+..     
T Consensus       161 aL~~LH~~givHrDlkp~NIll~~~~~---~~vkL~DFG~a~~~~~~~~~------~~~~gt~~y~aPE~~~~~~-----  226 (387)
T 1kob_A          161 GLKHMHEHSIVHLDIKPENIMCETKKA---SSVKIIDFGLATKLNPDEIV------KVTTATAEFAAPEIVDREP-----  226 (387)
T ss_dssp             HHHHHHHTTEECCCCCGGGEEESSTTC---CCEEECCCTTCEECCTTSCE------EEECSSGGGCCHHHHTTCC-----
T ss_pred             HHHHHHhCCeeecccchHHeEEecCCC---CceEEEecccceecCCCcce------eeeccCCCccCchhccCCC-----
Confidence            999999999999999999999985422   67999999999876543211      1357999999999997654     


Q ss_pred             CCCCcCchhhHHHHHHHHhcCCCCCcccccccccc------ccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHH
Q psy4039         432 VNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE------VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATV  505 (588)
Q Consensus       432 ~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~------~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~  505 (588)
                       ++.++|||||||++|||++|..||.+........      ....+..+..+++++++||.+||+.||.+|||++++++ 
T Consensus       227 -~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~-  304 (387)
T 1kob_A          227 -VGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDWEFDEDAFSSVSPEAKDFIKNLLQKEPRKRLTVHDALE-  304 (387)
T ss_dssp             -BCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHHCCCCCCSSTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHT-
T ss_pred             -CCCcccEeeHhHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCccccccCCHHHHHHHHHHcCCChhHCcCHHHHhh-
Confidence             4467999999999999999999998743211111      11122344578999999999999999999999999998 


Q ss_pred             HhhhhhcCCccccCC
Q psy4039         506 CQLYLWAPKHWLYGA  520 (588)
Q Consensus       506 L~~~~~~~h~w~~~~  520 (588)
                              |||++..
T Consensus       305 --------hp~~~~~  311 (387)
T 1kob_A          305 --------HPWLKGD  311 (387)
T ss_dssp             --------STTTSSC
T ss_pred             --------CccccCC
Confidence                    9999843

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=100.00  E-value=4.1e-44  Score=372.46  Aligned_cols=264  Identities=21%  Similarity=0.292  Sum_probs=209.9

Q ss_pred             CCccccccCCeEEeeeecccCceeEEEEEEC-----CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHH
Q psy4039         188 PDVDDVKVDDIQIGKFIAKGTNAVVYEATFR-----GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLM  262 (588)
Q Consensus       188 ~~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-----g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il  262 (588)
                      ....++..++|++.+.||+|+||.||+|.+.     +..||||++....   ..             ...+.+.+|+.++
T Consensus        41 ~~~~~~~~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~---~~-------------~~~~~~~~E~~~l  104 (325)
T 3kul_A           41 SFTREIEASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGY---TE-------------RQRRDFLSEASIM  104 (325)
T ss_dssp             --CCBCCGGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTC---CH-------------HHHHHHHHHHHHH
T ss_pred             hhccccChhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCC---CH-------------HHHHHHHHHHHHH
Confidence            3456677799999999999999999999985     4569999995321   10             1224566799999


Q ss_pred             hhhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHH
Q psy4039         263 NSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHE  341 (588)
Q Consensus       263 ~~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~  341 (588)
                      +.+    +||||+++++++.+..                            ..++||||+ +|+|.+++......+++.+
T Consensus       105 ~~l----~h~~iv~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~~~~~~~~  152 (325)
T 3kul_A          105 GQF----DHPNIIRLEGVVTRGR----------------------------LAMIVTEYMENGSLDTFLRTHDGQFTIMQ  152 (325)
T ss_dssp             TTC----CCTTBCCEEEEECGGG----------------------------CCEEEEECCTTCBHHHHHHTTTTCSCHHH
T ss_pred             HhC----CCCCCCcEEEEEEeCC----------------------------ccEEEeeCCCCCcHHHHHHhcccCCCHHH
Confidence            887    8999999999987632                            389999999 6799999987666899999


Q ss_pred             HHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhH
Q psy4039         342 RVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEV  421 (588)
Q Consensus       342 ~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~  421 (588)
                      ++.++.||+.||.|||++||+||||||+|||++.+     +.+||+|||+++...........  .....||+.|+|||+
T Consensus       153 ~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~-----~~~kl~Dfg~a~~~~~~~~~~~~--~~~~~~t~~y~aPE~  225 (325)
T 3kul_A          153 LVGMLRGVGAGMRYLSDLGYVHRDLAARNVLVDSN-----LVCKVSDFGLSRVLEDDPDAAYT--TTGGKIPIRWTAPEA  225 (325)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTT-----CCEEECCCSSCEECC----CCEE--CC---CCGGGSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCeeCCCCCcceEEECCC-----CCEEECCCCcccccccCccceee--ccCCCCcccccCHhH
Confidence            99999999999999999999999999999999887     89999999999876553221111  123457889999999


Q ss_pred             HhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCC
Q psy4039         422 ALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRP  497 (588)
Q Consensus       422 l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rp  497 (588)
                      +.+..      ++.++|||||||++|||++ |..||.+......   .......+.+..+|+++.++|.+||+.||.+||
T Consensus       226 ~~~~~------~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rp  299 (325)
T 3kul_A          226 IAFRT------FSSASDVWSFGVVMWEVLAYGERPYWNMTNRDVISSVEEGYRLPAPMGCPHALHQLMLDCWHKDRAQRP  299 (325)
T ss_dssp             HHHCE------ECHHHHHHHHHHHHHHHHTTSCCTTTTSCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSC
T ss_pred             hcCCC------CCcHHHHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHccCChhhCc
Confidence            98764      4568999999999999999 9999976432221   122233456678999999999999999999999


Q ss_pred             CHHHHHHHHhhhhhc
Q psy4039         498 SAELAATVCQLYLWA  512 (588)
Q Consensus       498 s~~e~l~~L~~~~~~  512 (588)
                      |++++++.|+..+-.
T Consensus       300 s~~eil~~L~~l~~~  314 (325)
T 3kul_A          300 RFSQIVSVLDALIRS  314 (325)
T ss_dssp             CHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHhC
Confidence            999999998876543

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=100.00  E-value=3e-44  Score=392.67  Aligned_cols=259  Identities=22%  Similarity=0.315  Sum_probs=211.6

Q ss_pred             ccccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcC
Q psy4039         190 VDDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVEN  267 (588)
Q Consensus       190 ~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~  267 (588)
                      ...+.+++|.+++.||+|+||.||+|.+.  |+.||||++....           . ..  ......+.+|+.+++.+  
T Consensus        10 ~~~~~~~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~-----------~-~~--~~~~~~~~~Ei~~l~~l--   73 (476)
T 2y94_A           10 DGRVKIGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQK-----------I-RS--LDVVGKIRREIQNLKLF--   73 (476)
T ss_dssp             CSCCEETTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHH-----------H-HH--TTTHHHHHHHHHHHTTC--
T ss_pred             CCCceecCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhh-----------c-cC--HHHHHHHHHHHHHHHhC--
Confidence            34566799999999999999999999997  8999999995311           0 00  11234567899999887  


Q ss_pred             CCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHH
Q psy4039         268 LPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLF  346 (588)
Q Consensus       268 l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~  346 (588)
                        +||||+++++++.+..                            .+|+||||+ +|+|.+++...+ .+++.+++.++
T Consensus        74 --~HpnIv~l~~~~~~~~----------------------------~~~lv~E~~~gg~L~~~l~~~~-~l~~~~~~~i~  122 (476)
T 2y94_A           74 --RHPHIIKLYQVISTPS----------------------------DIFMVMEYVSGGELFDYICKNG-RLDEKESRRLF  122 (476)
T ss_dssp             --CCTTBCCEEEEEECSS----------------------------EEEEEEECCSSEEHHHHTTSSS-SCCHHHHHHHH
T ss_pred             --CCCCCCcEEEEEEECC----------------------------EEEEEEeCCCCCcHHHHHHhcC-CCCHHHHHHHH
Confidence              8999999999987632                            499999999 689999997654 79999999999


Q ss_pred             HHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCC
Q psy4039         347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP  426 (588)
Q Consensus       347 ~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~  426 (588)
                      .||+.||.|||++||+||||||+|||++.+     +.+||+|||+++....+...      ...+||+.|+|||++.+..
T Consensus       123 ~qi~~aL~~LH~~givHrDLkp~NIll~~~-----~~vkL~DFG~a~~~~~~~~~------~~~~gt~~y~aPE~~~~~~  191 (476)
T 2y94_A          123 QQILSGVDYCHRHMVVHRDLKPENVLLDAH-----MNAKIADFGLSNMMSDGEFL------RTSCGSPNYAAPEVISGRL  191 (476)
T ss_dssp             HHHHHHHHHHHTTTEECSCCSGGGEEECTT-----CCEEECCCSSCEECCTTCCB------CCCCSCSTTCCHHHHTTCC
T ss_pred             HHHHHHHHHHHHCCCCcccccHHHEEEecC-----CCeEEEeccchhhccccccc------cccCCCcCeEChhhccCCC
Confidence            999999999999999999999999999987     89999999999876543211      2467999999999998654


Q ss_pred             CCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccccc--cccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHH
Q psy4039         427 GLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV--NALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAAT  504 (588)
Q Consensus       427 ~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~--~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~  504 (588)
                      .     .+.++|||||||++|||++|..||.+......+..  ......+..+++++.+||.+||+.||.+|||++++++
T Consensus       192 ~-----~~~~~DiwSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~Li~~~L~~dP~~Rpt~~eil~  266 (476)
T 2y94_A          192 Y-----AGPEVDIWSSGVILYALLCGTLPFDDDHVPTLFKKICDGIFYTPQYLNPSVISLLKHMLQVDPMKRATIKDIRE  266 (476)
T ss_dssp             B-----CSHHHHHHHHHHHHHHHHHSSCSSCCSSSHHHHHHHHTTCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             C-----CCCcceehhhHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCcCCCccCCHHHHHHHHHHcCCCchhCcCHHHHHh
Confidence            2     24579999999999999999999987533222111  1223456678999999999999999999999999999


Q ss_pred             HHhhhhhcCCccccCC
Q psy4039         505 VCQLYLWAPKHWLYGA  520 (588)
Q Consensus       505 ~L~~~~~~~h~w~~~~  520 (588)
                               |||++..
T Consensus       267 ---------hp~~~~~  273 (476)
T 2y94_A          267 ---------HEWFKQD  273 (476)
T ss_dssp             ---------CHHHHTT
T ss_pred             ---------CHHhhhc
Confidence                     9999854

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=100.00  E-value=1.4e-43  Score=371.54  Aligned_cols=267  Identities=20%  Similarity=0.248  Sum_probs=205.9

Q ss_pred             ccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCC
Q psy4039         194 KVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPH  271 (588)
Q Consensus       194 ~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~H  271 (588)
                      .+++|++.+.||+|+||.||+|++.  ++.||||++.......               .....+.+|+.+++.+    +|
T Consensus        15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~---------------~~~~~~~~E~~~l~~l----~h   75 (351)
T 3mi9_A           15 EVSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKE---------------GFPITALREIKILQLL----KH   75 (351)
T ss_dssp             BGGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSS---------------SSCHHHHHHHHHHHHC----CC
T ss_pred             cccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccc---------------cchHHHHHHHHHHHhc----cC
Confidence            3489999999999999999999996  8899999985432111               1233456799999988    89


Q ss_pred             CceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4039         272 PNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLE  351 (588)
Q Consensus       272 pNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~  351 (588)
                      |||+++++++.+....+                    ......+++||||++|+|.+.+......+++.++..++.||+.
T Consensus        76 ~~iv~~~~~~~~~~~~~--------------------~~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~i~~qi~~  135 (351)
T 3mi9_A           76 ENVVNLIEICRTKASPY--------------------NRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLN  135 (351)
T ss_dssp             TTBCCEEEEEEEC----------------------------CEEEEEEECCSEEHHHHHHCTTSCCCHHHHHHHHHHHHH
T ss_pred             CCcccHhheeecccccc--------------------ccCCceEEEEEeccCCCHHHHHhhccCCCCHHHHHHHHHHHHH
Confidence            99999999998743100                    0113358999999999999999876668999999999999999


Q ss_pred             HHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccC
Q psy4039         352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF  431 (588)
Q Consensus       352 gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~  431 (588)
                      ||.|||++||+||||||+|||++.+     +.+||+|||+|+......... ........||+.|+|||++.+...    
T Consensus       136 ~l~~LH~~~ivH~Dlkp~NIl~~~~-----~~~kl~Dfg~a~~~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~----  205 (351)
T 3mi9_A          136 GLYYIHRNKILHRDMKAANVLITRD-----GVLKLADFGLARAFSLAKNSQ-PNRYTNRVVTLWYRPPELLLGERD----  205 (351)
T ss_dssp             HHHHHHHTTEECCCCSGGGEEECTT-----SCEEECCCTTCEECCCCSSSS-CCCCCSSCSCGGGCCHHHHTTCCS----
T ss_pred             HHHHHHHCCeeCCCCCHHHEEEcCC-----CCEEEccchhccccccccccc-ccccCCcccccCccCchhhcCCCC----
Confidence            9999999999999999999999988     799999999998765422211 111234679999999999976431    


Q ss_pred             CCCCcCchhhHHHHHHHHhcCCCCCcccccccccc------ccccCCCCCC----------------------------c
Q psy4039         432 VNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE------VNALPQLNTN----------------------------V  477 (588)
Q Consensus       432 ~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~------~~~~~~~~~~----------------------------~  477 (588)
                       ++.++|||||||++|||++|.+||.+........      ....+..+..                            .
T Consensus       206 -~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (351)
T 3mi9_A          206 -YGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVR  284 (351)
T ss_dssp             -CCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGCGGGTSSCCCSSCCCCHHHHHHHHHC
T ss_pred             -CCcHhHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChhhccccccchhhcccccccccccCHHHHhhhccC
Confidence             4578999999999999999999997642111000      0000000000                            2


Q ss_pred             cHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccC
Q psy4039         478 PEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       478 ~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~  519 (588)
                      ++++.+||.+||+.||.+|||++|+++         |||+..
T Consensus       285 ~~~~~~li~~~L~~dP~~R~t~~e~l~---------hp~f~~  317 (351)
T 3mi9_A          285 DPYALDLIDKLLVLDPAQRIDSDDALN---------HDFFWS  317 (351)
T ss_dssp             CHHHHHHHHHHSCSSGGGSCCHHHHHT---------SGGGGS
T ss_pred             ChHHHHHHHHHhcCChhhCCCHHHHhC---------CCCcCC
Confidence            677999999999999999999999999         999983

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=100.00  E-value=8.8e-44  Score=366.32  Aligned_cols=258  Identities=22%  Similarity=0.237  Sum_probs=206.4

Q ss_pred             ccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCC
Q psy4039         192 DVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLP  269 (588)
Q Consensus       192 ~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~  269 (588)
                      .+..++|.+++.||+|+||+||+|.+.  +..||||++...+     ..            ..+.+.+|+.+++.+    
T Consensus         6 ~~~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~-----~~------------~~~~~~~E~~~l~~l----   64 (310)
T 3s95_A            6 IFRPSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFD-----EE------------TQRTFLKEVKVMRCL----   64 (310)
T ss_dssp             EECGGGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCC-----HH------------HHHHHHHHHHHHTTC----
T ss_pred             eeChhHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCC-----HH------------HHHHHHHHHHHHHhC----
Confidence            355689999999999999999999997  8899999984311     10            224566799999887    


Q ss_pred             CCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHH
Q psy4039         270 PHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQ  348 (588)
Q Consensus       270 ~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~q  348 (588)
                      +||||+++++++.+..                            ..++||||+ +|+|.+++......+++.++..++.|
T Consensus        65 ~hp~iv~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~q  116 (310)
T 3s95_A           65 EHPNVLKFIGVLYKDK----------------------------RLNFITEYIKGGTLRGIIKSMDSQYPWSQRVSFAKD  116 (310)
T ss_dssp             CCTTBCCEEEEEEETT----------------------------EEEEEEECCTTCBHHHHHHHCCTTSCHHHHHHHHHH
T ss_pred             CCcCcccEEEEEecCC----------------------------eeEEEEEecCCCcHHHHHHhccCCCCHHHHHHHHHH
Confidence            8999999999998732                            489999999 57999999986668999999999999


Q ss_pred             HHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCcccc---------ccccccccCCccccch
Q psy4039         349 LLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQY---------SSADIELGGNVALMAP  419 (588)
Q Consensus       349 l~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~---------~~~~~~~~GT~~Y~AP  419 (588)
                      +++||.|||++||+||||||+|||++.+     +.+||+|||+++..........         ........||+.|+||
T Consensus       117 i~~al~~lH~~~ivH~dlkp~Nil~~~~-----~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aP  191 (310)
T 3s95_A          117 IASGMAYLHSMNIIHRDLNSHNCLVREN-----KNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAP  191 (310)
T ss_dssp             HHHHHHHHHHTTEECSCCSTTSEEECTT-----SCEEECCCTTCEECC--------------------CCCCSCGGGCCH
T ss_pred             HHHHHHHHHhCCccCCCCCcCeEEECCC-----CCEEEeecccceecccccccccccccccccccccccccCCCcceeCH
Confidence            9999999999999999999999999987     8899999999987644221110         0111246799999999


Q ss_pred             hHHhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccc-----ccccccCCCCCCccHHHHHHHHHhhhhCCC
Q psy4039         420 EVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD-----YEVNALPQLNTNVPEVMRRLVAKLLENDPS  494 (588)
Q Consensus       420 E~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~-----~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~  494 (588)
                      |++.+..      ++.++|||||||++|||++|..||........     .........+..+|+++.+++.+||+.||+
T Consensus       192 E~~~~~~------~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~  265 (310)
T 3s95_A          192 EMINGRS------YDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFLDRYCPPNCPPSFFPITVRCCDLDPE  265 (310)
T ss_dssp             HHHTTCC------CCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSSBCHHHHHHHTCCTTCCTTHHHHHHHHTCSSGG
T ss_pred             HHhcCCC------CCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHhhhhhccccccCCCCCCHHHHHHHHHHccCChh
Confidence            9997755      45789999999999999999999876322111     111122234677899999999999999999


Q ss_pred             CCCCHHHHHHHHhhh
Q psy4039         495 DRPSAELAATVCQLY  509 (588)
Q Consensus       495 ~Rps~~e~l~~L~~~  509 (588)
                      +|||++++++.|+..
T Consensus       266 ~Rps~~~l~~~L~~l  280 (310)
T 3s95_A          266 KRPSFVKLEHWLETL  280 (310)
T ss_dssp             GSCCHHHHHHHHHHH
T ss_pred             hCcCHHHHHHHHHHH
Confidence            999999999977754

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=100.00  E-value=2.9e-44  Score=381.34  Aligned_cols=260  Identities=23%  Similarity=0.298  Sum_probs=212.0

Q ss_pred             CCccccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhh
Q psy4039         188 PDVDDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSV  265 (588)
Q Consensus       188 ~~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l  265 (588)
                      ...|.+..++|.+.+.||+|+||.||+|.+.  ++.||||++....   .             ......+.+|+.+|+.+
T Consensus       106 ~~~~~~~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~---~-------------~~~~~~~~~E~~~l~~l  169 (377)
T 3cbl_A          106 KDKWVLNHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETL---P-------------PDLKAKFLQEARILKQY  169 (377)
T ss_dssp             CCTTBCCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTS---C-------------HHHHTTTTHHHHHHTTC
T ss_pred             ccccEEchHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccC---C-------------HHHHHHHHHHHHHHHhC
Confidence            4667888899999999999999999999996  8899999985321   0             01234567899999987


Q ss_pred             cCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHH
Q psy4039         266 ENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVL  344 (588)
Q Consensus       266 ~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~  344 (588)
                          +|||||++++++.+..                            .+++||||+ +|+|.+++...+..+++..+..
T Consensus       170 ----~hpniv~~~~~~~~~~----------------------------~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~  217 (377)
T 3cbl_A          170 ----SHPNIVRLIGVCTQKQ----------------------------PIYIVMELVQGGDFLTFLRTEGARLRVKTLLQ  217 (377)
T ss_dssp             ----CCTTBCCEEEEECSSS----------------------------SCEEEEECCTTCBHHHHHHHHGGGCCHHHHHH
T ss_pred             ----CCCCEEEEEEEEecCC----------------------------CcEEEEEcCCCCCHHHHHHhcCCCCCHHHHHH
Confidence                8999999999987632                            389999999 6899999998766799999999


Q ss_pred             HHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhc
Q psy4039         345 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALA  424 (588)
Q Consensus       345 i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~  424 (588)
                      ++.|++.||.|||++||+||||||+|||++.+     +.+||+|||+++....+...   .......+|+.|+|||++.+
T Consensus       218 ~~~qi~~~l~~LH~~~ivHrDlkp~Nil~~~~-----~~~kl~DfG~s~~~~~~~~~---~~~~~~~~~~~y~aPE~~~~  289 (377)
T 3cbl_A          218 MVGDAAAGMEYLESKCCIHRDLAARNCLVTEK-----NVLKISDFGMSREEADGVYA---ASGGLRQVPVKWTAPEALNY  289 (377)
T ss_dssp             HHHHHHHHHHHHHHTTEECSCCSGGGEEECTT-----CCEEECCGGGCEECTTSEEE---CCSSCCEEEGGGSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCcCCcccCHHHEEEcCC-----CcEEECcCCCceecCCCcee---ecCCCCCCCcCcCCHhHhcc
Confidence            99999999999999999999999999999987     79999999999875442211   11112346788999999986


Q ss_pred             CCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHH
Q psy4039         425 TPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE  500 (588)
Q Consensus       425 ~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~  500 (588)
                      ..      ++.++|||||||++|||++ |..||.+......   .......+.+..+|+++.+||.+||+.||++|||++
T Consensus       290 ~~------~~~~~DvwslG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~  363 (377)
T 3cbl_A          290 GR------YSSESDVWSFGILLWETFSLGASPYPNLSNQQTREFVEKGGRLPCPELCPDAVFRLMEQCWAYEPGQRPSFS  363 (377)
T ss_dssp             CE------EEHHHHHHHHHHHHHHHHTTSCCSSTTSCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             CC------CCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCchhCcCHH
Confidence            64      4468999999999999998 9999976422211   122334456778999999999999999999999999


Q ss_pred             HHHHHHhhh
Q psy4039         501 LAATVCQLY  509 (588)
Q Consensus       501 e~l~~L~~~  509 (588)
                      ++++.|+..
T Consensus       364 ~i~~~L~~i  372 (377)
T 3cbl_A          364 TIYQELQSI  372 (377)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988754

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=100.00  E-value=8.6e-45  Score=385.18  Aligned_cols=271  Identities=17%  Similarity=0.164  Sum_probs=196.0

Q ss_pred             cccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCC
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPP  270 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~  270 (588)
                      ...++|++.+.||+|+||.||+|++.  |+.||||++.........              ..+.+.+|+.+++.+.. ++
T Consensus        70 ~~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~--------------~~~~~~~E~~~l~~l~~-l~  134 (377)
T 3byv_A           70 ERPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSN--------------AIKQMKEEVLRLRLLRG-IK  134 (377)
T ss_dssp             CCCEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTT--------------HHHHHHHHHHGGGGSTT-CC
T ss_pred             CCCceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchH--------------HHHHHHHHHHHHHhccc-cC
Confidence            34478999999999999999999975  889999999643222111              22445678866655432 28


Q ss_pred             CCceEEEe-------eeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCC---ceEEEEEecCCCcHHHHHHHhcCCCC--
Q psy4039         271 HPNVVVMH-------FAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRN---MSLFILMKKYNTDLRNYLRERCAQLS--  338 (588)
Q Consensus       271 HpNIV~l~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~---~~l~lvme~~~gsL~~~L~~~~~~l~--  338 (588)
                      |||||+++       +++.+....              ...........   ...|++|||++|+|.+++.... .++  
T Consensus       135 hpniv~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~i~~~~lv~E~~~g~L~~~l~~~~-~~~~~  199 (377)
T 3byv_A          135 NQKQAKVHLRFIFPFDLVKDPQKK--------------KMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLL-SHSST  199 (377)
T ss_dssp             SHHHHHHHHCBCCCSEEEECTTSC--------------SEEEC------CEEESEEEEEECCSEEHHHHHHHHH-HTTTT
T ss_pred             CHHHHHHHhhhhhhhhhhhccCCc--------------cccccccCCCceEEEEEEEEEeccCCCHHHHHHhcc-ccccc
Confidence            99999998       444432100              00000000001   1388999999999999998753 344  


Q ss_pred             -----HHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCC
Q psy4039         339 -----MHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGN  413 (588)
Q Consensus       339 -----~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT  413 (588)
                           +..++.|+.||+.||.|||++||+||||||+|||++.+     +.+||+|||+|+.....        ....+| 
T Consensus       200 ~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIll~~~-----~~~kL~DFG~a~~~~~~--------~~~~~g-  265 (377)
T 3byv_A          200 HKSLVHHARLQLTLQVIRLLASLHHYGLVHTYLRPVDIVLDQR-----GGVFLTGFEHLVRDGAR--------VVSSVS-  265 (377)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTT-----CCEEECCGGGCEETTCE--------EECCCC-
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCC-----CCEEEEechhheecCCc--------ccCCCC-
Confidence                 48888999999999999999999999999999999987     79999999999864321        124567 


Q ss_pred             ccccchhHHhcCCC-----CccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccccccccCCCCCCccHHHHHHHHHh
Q psy4039         414 VALMAPEVALATPG-----LFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKL  488 (588)
Q Consensus       414 ~~Y~APE~l~~~~~-----~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~l~~Li~~~  488 (588)
                      +.|+|||++.+...     .....++.++|||||||++|||++|+.||.+...........  ..+..+|+++.+||.+|
T Consensus       266 ~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~il~elltg~~Pf~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~  343 (377)
T 3byv_A          266 RGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCADLPITKDAALGGSEWIF--RSCKNIPQPVRALLEGF  343 (377)
T ss_dssp             TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHHHHHHHHHSSCCC------CCSGGGG--SSCCCCCHHHHHHHHHH
T ss_pred             cCccChhhhcccccccccccccccCChhhhHHHHHHHHHHHHHCCCCCcccccccchhhhh--hhccCCCHHHHHHHHHH
Confidence            99999999986500     000014578999999999999999999997754333322211  23367899999999999


Q ss_pred             hhhCCCCCCCHHHHHHHHhhhhhcCCcccc
Q psy4039         489 LENDPSDRPSAELAATVCQLYLWAPKHWLY  518 (588)
Q Consensus       489 L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~  518 (588)
                      |+.||++|||+.++++         |||++
T Consensus       344 L~~dp~~Rpt~~e~l~---------hp~f~  364 (377)
T 3byv_A          344 LRYPKEDRLLPLQAME---------TPEYE  364 (377)
T ss_dssp             TCSSGGGCCCHHHHHT---------SHHHH
T ss_pred             cCCCchhCCCHHHHhh---------ChHHH
Confidence            9999999999999999         99985

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=100.00  E-value=2.1e-44  Score=381.16  Aligned_cols=271  Identities=15%  Similarity=0.116  Sum_probs=191.4

Q ss_pred             cccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCC
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPP  270 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~  270 (588)
                      ....+|++.+.||+|+||+||+|.+.  ++.||||++........              ...+.+.+|+.+++.+..  +
T Consensus        59 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~--------------~~~~~~~~E~~~~~~l~~--~  122 (371)
T 3q60_A           59 QGERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSR--------------SELERLHEATFAAARLLG--E  122 (371)
T ss_dssp             CCEEEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHH--------------HHHHHHHHHHHHHHHHHC---
T ss_pred             CCceeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccc--------------cHHHHHHHHHHHHHHhcc--c
Confidence            33456999999999999999999986  88999999965332111              022345668777777744  6


Q ss_pred             CCceEEEee-------eeeccCCCCCCCCCcCCCCCCCccC--CCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHH
Q psy4039         271 HPNVVVMHF-------AFTDFVPSIPDSSLIYPSALPARLN--PTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHE  341 (588)
Q Consensus       271 HpNIV~l~~-------~~~~~~~~~~~~~~l~~~~~~~~~~--~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~  341 (588)
                      ||||++++.       ++.....             |....  ..........+|+||||++|+|.+++...+..+++..
T Consensus       123 hp~iv~~~~~~~~p~d~~~~~~~-------------~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~  189 (371)
T 3q60_A          123 SPEEARDRRRLLLPSDAVAVQSQ-------------PPFAQLSPGQDDYAVANYLLLMPAASVDLELLFSTLDFVYVFRG  189 (371)
T ss_dssp             ---------CBCCCCEEEEETTS-------------CSSSBCSCC---CCEEEEEEEECCCSEEHHHHHHHHHHSCCCCH
T ss_pred             ChhhhhhceeEEeeehheecCCC-------------CCeeeccCCcccceeeeEEEEecCCCCCHHHHHHHhccccchhh
Confidence            999988663       3332110             00000  0000111245899999999999999987644566666


Q ss_pred             H------HHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCcc
Q psy4039         342 R------VLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVA  415 (588)
Q Consensus       342 ~------~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~  415 (588)
                      +      ..++.||++||.|||++||+||||||+|||++.+     +.+||+|||+|+......        ....||+.
T Consensus       190 ~~~~~vk~~i~~qi~~aL~~LH~~~ivHrDikp~NIll~~~-----~~~kL~DFG~a~~~~~~~--------~~~~~t~~  256 (371)
T 3q60_A          190 DEGILALHILTAQLIRLAANLQSKGLVHGHFTPDNLFIMPD-----GRLMLGDVSALWKVGTRG--------PASSVPVT  256 (371)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTEEETTCSGGGEEECTT-----SCEEECCGGGEEETTCEE--------EGGGSCGG
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHCCCccCcCCHHHEEECCC-----CCEEEEecceeeecCCCc--------cCccCCcC
Confidence            6      7888999999999999999999999999999987     899999999998754311        13456799


Q ss_pred             ccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccc--ccc---------ccccCCCCCCccHHHHHH
Q psy4039         416 LMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNT--DYE---------VNALPQLNTNVPEVMRRL  484 (588)
Q Consensus       416 Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~--~~~---------~~~~~~~~~~~~~~l~~L  484 (588)
                      |+|||++.+....    ++.++|||||||++|||++|+.||.+.....  .+.         .....+.+..+|+++.+|
T Consensus       257 y~aPE~~~~~~~~----~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  332 (371)
T 3q60_A          257 YAPREFLNASTAT----FTHALNAWQLGLSIYRVWCLFLPFGLVTPGIKGSWKRPSLRVPGTDSLAFGSCTPLPDFVKTL  332 (371)
T ss_dssp             GCCHHHHTCSEEE----CCHHHHHHHHHHHHHHHHHSSCSTTBCCTTCTTCCCBCCTTSCCCCSCCCTTSSCCCHHHHHH
T ss_pred             CcChhhccCCCCC----cCccccHHHHHHHHHHHHhCCCCCCCcCcccccchhhhhhhhccccccchhhccCCCHHHHHH
Confidence            9999999652211    4578999999999999999999998752211  010         011112235789999999


Q ss_pred             HHHhhhhCCCCCCCHHHHHHHHhhhhhcCCcccc
Q psy4039         485 VAKLLENDPSDRPSAELAATVCQLYLWAPKHWLY  518 (588)
Q Consensus       485 i~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~  518 (588)
                      |.+||+.||++|||++++++         |||++
T Consensus       333 i~~~L~~dP~~Rpt~~e~l~---------hp~f~  357 (371)
T 3q60_A          333 IGRFLNFDRRRRLLPLEAME---------TPEFL  357 (371)
T ss_dssp             HHHHTCSSTTTCCCHHHHTT---------SHHHH
T ss_pred             HHHHcCCChhhCCCHHHHhc---------CHHHH
Confidence            99999999999999999998         99985

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=100.00  E-value=4.6e-44  Score=383.13  Aligned_cols=255  Identities=22%  Similarity=0.312  Sum_probs=196.6

Q ss_pred             cccCCeEEe-eeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCC
Q psy4039         193 VKVDDIQIG-KFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLP  269 (588)
Q Consensus       193 i~~~~~~~~-~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~  269 (588)
                      ..+++|.+. +.||+|+||+||+|.+.  ++.||||++..                      .....+|+.++.++   .
T Consensus        58 ~~~~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~----------------------~~~~~~E~~~~~~~---~  112 (400)
T 1nxk_A           58 AIIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD----------------------CPKARREVELHWRA---S  112 (400)
T ss_dssp             CGGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC----------------------SHHHHHHHHHHHHH---T
T ss_pred             cccccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCc----------------------chhHHHHHHHHHHh---c
Confidence            345788887 79999999999999997  78999999842                      12345678777655   5


Q ss_pred             CCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc-CCCCHHHHHHHHH
Q psy4039         270 PHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC-AQLSMHERVLLFT  347 (588)
Q Consensus       270 ~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~-~~l~~~~~~~i~~  347 (588)
                      +||||++++++|....                        .....+|+||||+ +|+|.+++.... ..+++.++..|+.
T Consensus       113 ~hp~iv~l~~~~~~~~------------------------~~~~~~~lv~E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~  168 (400)
T 1nxk_A          113 QCPHIVRIVDVYENLY------------------------AGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMK  168 (400)
T ss_dssp             TSTTBCCEEEEEEEEE------------------------TTEEEEEEEEECCCSEEHHHHHHCC---CCBHHHHHHHHH
T ss_pred             CCCCcceEeEEEeecc------------------------cCCcEEEEEEEeCCCCcHHHHHHHhCCCCCCHHHHHHHHH
Confidence            8999999999987521                        1233589999999 579999998653 3699999999999


Q ss_pred             HHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCC
Q psy4039         348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG  427 (588)
Q Consensus       348 ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~  427 (588)
                      ||+.||.|||++||+||||||+|||++.+..+  +.+||+|||+++.......      ....+||+.|+|||++.+.. 
T Consensus       169 qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~--~~~kl~DFG~a~~~~~~~~------~~~~~gt~~y~aPE~~~~~~-  239 (400)
T 1nxk_A          169 SIGEAIQYLHSINIAHRDVKPENLLYTSKRPN--AILKLTDFGFAKETTSHNS------LTTPCYTPYYVAPEVLGPEK-  239 (400)
T ss_dssp             HHHHHHHHHHHTTEECCCCCGGGEEESSSSTT--CCEEECCCTTCEECC-----------------CTTCCGGGSCCCC-
T ss_pred             HHHHHHHHHHHCCccccCcCcceEEEecCCCC--ccEEEEecccccccCCCCc------cccCCCCCCccCHhhcCCCC-
Confidence            99999999999999999999999999873211  7899999999987543211      12567999999999986554 


Q ss_pred             CccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccc-------ccc---cccCCCCCCccHHHHHHHHHhhhhCCCCCC
Q psy4039         428 LFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD-------YEV---NALPQLNTNVPEVMRRLVAKLLENDPSDRP  497 (588)
Q Consensus       428 ~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~-------~~~---~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rp  497 (588)
                           ++.++|||||||++|||++|+.||.+......       ...   ......+..+++++++||.+||+.||++||
T Consensus       240 -----~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp  314 (400)
T 1nxk_A          240 -----YDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRM  314 (400)
T ss_dssp             -----SSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHHHHHHHTCCCCCTTTTTTSCHHHHHHHHTTSCSSGGGSC
T ss_pred             -----CCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHHHHHHcCcccCCCcccccCCHHHHHHHHHHCCCChhHCc
Confidence                 45789999999999999999999976432211       000   011122357899999999999999999999


Q ss_pred             CHHHHHHHHhhhhhcCCccccC
Q psy4039         498 SAELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       498 s~~e~l~~L~~~~~~~h~w~~~  519 (588)
                      |++++++         |||+..
T Consensus       315 t~~eil~---------hp~~~~  327 (400)
T 1nxk_A          315 TITEFMN---------HPWIMQ  327 (400)
T ss_dssp             CHHHHHH---------SHHHHT
T ss_pred             CHHHHhc---------CccccC
Confidence            9999999         999983

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=100.00  E-value=8.5e-44  Score=390.32  Aligned_cols=252  Identities=27%  Similarity=0.384  Sum_probs=204.1

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||+||+|.+.  ++.||||++.....               .......+.+|+.+++.+    +|||
T Consensus        22 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~---------------~~~~~~~~~~E~~~l~~l----~hpn   82 (486)
T 3mwu_A           22 ERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASA---------------KNKDTSTILREVELLKKL----DHPN   82 (486)
T ss_dssp             HHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHH---------------BCSCHHHHHHHHHHHHHC----CCTT
T ss_pred             cceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccc---------------cchHHHHHHHHHHHHHhC----CCCC
Confidence            78999999999999999999997  88999999853111               111334567899999998    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      ||++++++.+..                            .+|+||||| +|+|.+++.... .+++.++..++.||+.|
T Consensus        83 iv~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~i~~qi~~a  133 (486)
T 3mwu_A           83 IMKLFEILEDSS----------------------------SFYIVGELYTGGELFDEIIKRK-RFSEHDAARIIKQVFSG  133 (486)
T ss_dssp             BCCEEEEEECSS----------------------------EEEEEECCCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHH
T ss_pred             cCeEEEEEEcCC----------------------------EEEEEEEcCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHH
Confidence            999999998632                            499999999 679999998765 89999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||++||+||||||+|||++.....  +.+||+|||+++.......      ....+||+.|+|||++.+.       
T Consensus       134 l~~lH~~~ivH~Dlkp~Nil~~~~~~~--~~~kl~Dfg~a~~~~~~~~------~~~~~gt~~y~aPE~~~~~-------  198 (486)
T 3mwu_A          134 ITYMHKHNIVHRDLKPENILLESKEKD--CDIKIIDFGLSTCFQQNTK------MKDRIGTAYYIAPEVLRGT-------  198 (486)
T ss_dssp             HHHHHHTTCCCSCCSGGGEEESSSSTT--CCEEECSCSCTTTBCCC----------CCTTGGGGCCGGGGGSC-------
T ss_pred             HHHHHHCCeEeccCchHHEEEecCCCC--CCEEEEECCcCeECCCCCc------cCCCcCCCCCCCHHHhCCC-------
Confidence            999999999999999999999754211  6799999999987654321      1245799999999998653       


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCccccccccccc------cccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHH
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV------NALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVC  506 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~------~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L  506 (588)
                      ++.++||||+||++|+|++|.+||.+.........      ....+.+..+|+++++||.+||+.||.+|||+.++++  
T Consensus       199 ~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~~~l~--  276 (486)
T 3mwu_A          199 YDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFDLPQWRTISDDAKDLIRKMLTFHPSLRITATQCLE--  276 (486)
T ss_dssp             CCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCSCSGGGGGSCHHHHHHHHHHTCSSTTTSCCHHHHHH--
T ss_pred             CCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCcccCCCCHHHHHHHHHHcCCChhhCcCHHHHhc--
Confidence            45689999999999999999999977432221111      0111223567899999999999999999999999999  


Q ss_pred             hhhhhcCCccccC
Q psy4039         507 QLYLWAPKHWLYG  519 (588)
Q Consensus       507 ~~~~~~~h~w~~~  519 (588)
                             |||++.
T Consensus       277 -------hp~~~~  282 (486)
T 3mwu_A          277 -------HPWIQK  282 (486)
T ss_dssp             -------CHHHHH
T ss_pred             -------CHhhcc
Confidence                   999983

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=100.00  E-value=1.5e-43  Score=389.13  Aligned_cols=251  Identities=25%  Similarity=0.343  Sum_probs=200.5

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      +.|++.+.||+|+||+||+|++.  +..||||++.......               .....+.+|+.+++.+    +|||
T Consensus        37 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~---------------~~~~~~~~E~~~l~~l----~hpn   97 (494)
T 3lij_A           37 EMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVST---------------SSNSKLLEEVAVLKLL----DHPN   97 (494)
T ss_dssp             HHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC--------------------CTTHHHHHHHHHHTTC----CCTT
T ss_pred             cCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCc---------------hHHHHHHHHHHHHHhC----CCCC
Confidence            67999999999999999999997  7899999996432111               1234567799999887    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      ||+++++|.+..                            ..|+||||| +|+|.+++.... .+++..+..++.||+.|
T Consensus        98 iv~~~~~~~~~~----------------------------~~~lv~e~~~~g~L~~~~~~~~-~~~~~~~~~i~~qi~~~  148 (494)
T 3lij_A           98 IMKLYDFFEDKR----------------------------NYYLVMECYKGGELFDEIIHRM-KFNEVDAAVIIKQVLSG  148 (494)
T ss_dssp             BCCEEEEEECSS----------------------------EEEEEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEEeCC----------------------------EEEEEEecCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence            999999998632                            489999999 679999988764 89999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||++||+||||||+|||++....  .+.+||+|||+|+.......      ....+||+.|+|||++.+.       
T Consensus       149 l~~lH~~~ivH~Dlkp~Nil~~~~~~--~~~~kl~DfG~a~~~~~~~~------~~~~~gt~~y~aPE~l~~~-------  213 (494)
T 3lij_A          149 VTYLHKHNIVHRDLKPENLLLESKEK--DALIKIVDFGLSAVFENQKK------MKERLGTAYYIAPEVLRKK-------  213 (494)
T ss_dssp             HHHHHHTTEECSCCSGGGEEESCSST--TCCEEECCCTTCEECBTTBC------BCCCCSCTTTCCHHHHTTC-------
T ss_pred             HHHHHHCCceeccCChhhEEEeCCCC--CCcEEEEECCCCeECCCCcc------ccccCCCcCeeCHHHHccc-------
Confidence            99999999999999999999986521  15799999999987654322      1246799999999998632       


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCccccccccccc------cccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHH
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV------NALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVC  506 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~------~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L  506 (588)
                      ++.++||||+||++|+|++|.+||.+.........      ....+.+..+|+++++||.+||+.||.+|||++++++  
T Consensus       214 ~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~--  291 (494)
T 3lij_A          214 YDEKCDVWSIGVILFILLAGYPPFGGQTDQEILRKVEKGKYTFDSPEWKNVSEGAKDLIKQMLQFDSQRRISAQQALE--  291 (494)
T ss_dssp             BCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCSGGGTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT--
T ss_pred             CCCchhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCchhcccCCHHHHHHHHHHCCCChhhCccHHHHhc--
Confidence            45789999999999999999999987432211111      1111223578999999999999999999999999999  


Q ss_pred             hhhhhcCCcccc
Q psy4039         507 QLYLWAPKHWLY  518 (588)
Q Consensus       507 ~~~~~~~h~w~~  518 (588)
                             |||++
T Consensus       292 -------hp~~~  296 (494)
T 3lij_A          292 -------HPWIK  296 (494)
T ss_dssp             -------CHHHH
T ss_pred             -------Ccccc
Confidence                   99996

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=100.00  E-value=8.9e-44  Score=378.61  Aligned_cols=264  Identities=15%  Similarity=0.161  Sum_probs=205.3

Q ss_pred             ccccCCeEEeeeeccc--CceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcC
Q psy4039         192 DVKVDDIQIGKFIAKG--TNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVEN  267 (588)
Q Consensus       192 ~i~~~~~~~~~~IG~G--~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~  267 (588)
                      ....++|++.+.||+|  +||.||+|++.  ++.||||++.......               ...+.+.+|+.+++.+  
T Consensus        21 ~~~~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~---------------~~~~~~~~E~~~l~~l--   83 (389)
T 3gni_B           21 LPEGGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSN---------------EMVTFLQGELHVSKLF--   83 (389)
T ss_dssp             CCCGGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCH---------------HHHHHHHHHHHHHHHC--
T ss_pred             cCCCCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccCh---------------HHHHHHHHHHHHHHhC--
Confidence            3445889999999999  99999999997  8899999996422111               0223456799999987  


Q ss_pred             CCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh-cCCCCHHHHHHH
Q psy4039         268 LPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER-CAQLSMHERVLL  345 (588)
Q Consensus       268 l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~-~~~l~~~~~~~i  345 (588)
                        +|||||++++++.+..                            .+++||||+ +|+|.+++... ...+++..+..+
T Consensus        84 --~h~niv~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~  133 (389)
T 3gni_B           84 --NHPNIVPYRATFIADN----------------------------ELWVVTSFMAYGSAKDLICTHFMDGMNELAIAYI  133 (389)
T ss_dssp             --CCTTBCCEEEEEEETT----------------------------EEEEEEECCTTCBHHHHHHHTCTTCCCHHHHHHH
T ss_pred             --CCCCCCcEeEEEEECC----------------------------EEEEEEEccCCCCHHHHHhhhcccCCCHHHHHHH
Confidence              8999999999998732                            499999999 58999999875 247999999999


Q ss_pred             HHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccc--cccccccccCCccccchhHHh
Q psy4039         346 FTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQ--YSSADIELGGNVALMAPEVAL  423 (588)
Q Consensus       346 ~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~--~~~~~~~~~GT~~Y~APE~l~  423 (588)
                      +.||+.||.|||++||+||||||+|||++.+     +.+||+|||++..........  ........+||+.|+|||++.
T Consensus       134 ~~qi~~~l~~LH~~~ivHrDlkp~NIll~~~-----~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~  208 (389)
T 3gni_B          134 LQGVLKALDYIHHMGYVHRSVKASHILISVD-----GKVYLSGLRSNLSMISHGQRQRVVHDFPKYSVKVLPWLSPEVLQ  208 (389)
T ss_dssp             HHHHHHHHHHHHHTTEECCCCSGGGEEECTT-----CCEEECCGGGCEECEETTEECSCBCCCCTTCTTTGGGSCHHHHS
T ss_pred             HHHHHHHHHHHHhCCeecCCCCHHHEEEcCC-----CCEEEcccccceeeccccccccccccccccccccccccCHHHHh
Confidence            9999999999999999999999999999987     899999999987643211110  111112357999999999997


Q ss_pred             cCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccccc------------------------------------
Q psy4039         424 ATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV------------------------------------  467 (588)
Q Consensus       424 ~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~------------------------------------  467 (588)
                      +....    ++.++|||||||++|||++|+.||.+.........                                    
T Consensus       209 ~~~~~----~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (389)
T 3gni_B          209 QNLQG----YDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKLNGTVPCLLDTSTIPAEELTMSPSRSVANSGLSDS  284 (389)
T ss_dssp             TTSSC----BCTHHHHHHHHHHHHHHHHSSCTTTTCCSTTHHHHC-----------------------------------
T ss_pred             ccCCC----CCcHhHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHhcCCCCccccccccccccccccccccccccccccc
Confidence            64222    45789999999999999999999976321111100                                    


Q ss_pred             ------------cccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccCC
Q psy4039         468 ------------NALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGA  520 (588)
Q Consensus       468 ------------~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~  520 (588)
                                  ....+.+..+++++.+||.+||+.||.+|||++++++         |||++..
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~ell~---------hp~f~~~  340 (389)
T 3gni_B          285 LTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTLLN---------HSFFKQI  340 (389)
T ss_dssp             ---------------------CCHHHHHHHHHHTCSCTTTSCCHHHHTT---------SGGGGGC
T ss_pred             cccCccccccCCCCCCccccccCHHHHHHHHHHhhcCcccCCCHHHHhc---------CHHHHHH
Confidence                        0001234567889999999999999999999999998         9999844

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=100.00  E-value=7e-44  Score=360.80  Aligned_cols=255  Identities=25%  Similarity=0.378  Sum_probs=188.3

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      +++|++.+.||+|+||.||+|.+.  ++.||||++....           ...   ....+.+.+|+.+++.+    +||
T Consensus        10 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~-----------~~~---~~~~~~~~~e~~~l~~l----~h~   71 (278)
T 3cok_A           10 IEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKA-----------MYK---AGMVQRVQNEVKIHCQL----KHP   71 (278)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHH-----------HHH---TTCHHHHHHHHHHHTTB----CCT
T ss_pred             cccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhh-----------hhh---hhHHHHHHHHHHHHHhC----CCC
Confidence            478999999999999999999985  8899999985311           000   11234567799999887    899


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLE  351 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~  351 (588)
                      ||+++++++.+..                            ..++||||+ +++|.+++......+++..++.++.|+++
T Consensus        72 ~i~~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~  123 (278)
T 3cok_A           72 SILELYNYFEDSN----------------------------YVYLVLEMCHNGEMNRYLKNRVKPFSENEARHFMHQIIT  123 (278)
T ss_dssp             TBCCEEEEEECSS----------------------------EEEEEEECCTTEEHHHHHHTCSSCCCHHHHHHHHHHHHH
T ss_pred             CeEeEEEEEccCC----------------------------eEEEEEecCCCCcHHHHHhhccCCCCHHHHHHHHHHHHH
Confidence            9999999987632                            489999999 57999999876558999999999999999


Q ss_pred             HHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccC
Q psy4039         352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF  431 (588)
Q Consensus       352 gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~  431 (588)
                      ||.|||++||+||||||+||+++.+     +.+||+|||++.........     .....||+.|+|||++.+..     
T Consensus       124 ~l~~lH~~~i~H~dl~p~Nili~~~-----~~~kl~dfg~~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~-----  188 (278)
T 3cok_A          124 GMLYLHSHGILHRDLTLSNLLLTRN-----MNIKIADFGLATQLKMPHEK-----HYTLCGTPNYISPEIATRSA-----  188 (278)
T ss_dssp             HHHHHHHTTEECSSCCGGGEEECTT-----CCEEECCCTTCEECC-----------------------------------
T ss_pred             HHHHHHHCCeecCCCCHHHEEEcCC-----CCEEEEeecceeeccCCCCc-----ceeccCCCCcCCcchhcCCC-----
Confidence            9999999999999999999999987     79999999999876432111     12456999999999987654     


Q ss_pred             CCCCcCchhhHHHHHHHHhcCCCCCccccccccccc--cccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhh
Q psy4039         432 VNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV--NALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLY  509 (588)
Q Consensus       432 ~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~--~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~  509 (588)
                       ++.++|||||||++|||++|+.||...........  ......+..++.++.++|.+||+.||++|||++++++     
T Consensus       189 -~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~-----  262 (278)
T 3cok_A          189 -HGLESDVWSLGCMFYTLLIGRPPFDTDTVKNTLNKVVLADYEMPSFLSIEAKDLIHQLLRRNPADRLSLSSVLD-----  262 (278)
T ss_dssp             ----CTHHHHHHHHHHHHHHSSCSSCCCSCC-----CCSSCCCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT-----
T ss_pred             -CCchhhHHHHHHHHHHHHhCCCCCCChhHHHHHHHHhhcccCCccccCHHHHHHHHHHcccCHhhCCCHHHHhc-----
Confidence             45789999999999999999999976432222111  1122345678999999999999999999999999998     


Q ss_pred             hhcCCccccCC
Q psy4039         510 LWAPKHWLYGA  520 (588)
Q Consensus       510 ~~~~h~w~~~~  520 (588)
                          |||+...
T Consensus       263 ----h~~~~~~  269 (278)
T 3cok_A          263 ----HPFMSRN  269 (278)
T ss_dssp             ----STTTC--
T ss_pred             ----CccccCC
Confidence                9999744

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.8e-43  Score=369.47  Aligned_cols=254  Identities=21%  Similarity=0.304  Sum_probs=207.1

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||.||+|.+.  ++.||||++.........         .........+.+|+.+++.+    +|||
T Consensus        24 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~---------~~~~~~~~~~~~E~~~l~~l----~h~~   90 (335)
T 3dls_A           24 QKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDC---------WIEDPKLGKVTLEIAILSRV----EHAN   90 (335)
T ss_dssp             HHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTS---------EEEETTTEEEEHHHHHHTTC----CCTT
T ss_pred             cceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhccccc---------ccchHHHHHHHHHHHHHHhC----CCCC
Confidence            78999999999999999999886  889999999653321110         00111334567899999987    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CC-cHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NT-DLRNYLRERCAQLSMHERVLLFTQLLE  351 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~g-sL~~~L~~~~~~l~~~~~~~i~~ql~~  351 (588)
                      |++++++|.+..                            ..++||||+ +| +|.+++.... .+++..+..++.||+.
T Consensus        91 Iv~~~~~~~~~~----------------------------~~~lv~e~~~~g~~l~~~~~~~~-~l~~~~~~~i~~qi~~  141 (335)
T 3dls_A           91 IIKVLDIFENQG----------------------------FFQLVMEKHGSGLDLFAFIDRHP-RLDEPLASYIFRQLVS  141 (335)
T ss_dssp             BCCEEEEEECSS----------------------------EEEEEEECCTTSCBHHHHHHTCC-CCCHHHHHHHHHHHHH
T ss_pred             EeeEEEEEeeCC----------------------------EEEEEEEeCCCCccHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence            999999997632                            489999998 45 9999998754 7999999999999999


Q ss_pred             HHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccC
Q psy4039         352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF  431 (588)
Q Consensus       352 gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~  431 (588)
                      ||.|||++||+||||||+|||++.+     +.+||+|||+++........      ....||+.|+|||++.+...    
T Consensus       142 ~L~~LH~~~ivH~Dlkp~NIll~~~-----~~~kL~Dfg~a~~~~~~~~~------~~~~gt~~y~aPE~~~~~~~----  206 (335)
T 3dls_A          142 AVGYLRLKDIIHRDIKDENIVIAED-----FTIKLIDFGSAAYLERGKLF------YTFCGTIEYCAPEVLMGNPY----  206 (335)
T ss_dssp             HHHHHHHTTEECSCCSGGGEEECTT-----SCEEECCCTTCEECCTTCCB------CEECSCGGGCCHHHHTTCCB----
T ss_pred             HHHHHHhCCeEEeccCHHHEEEcCC-----CcEEEeecccceECCCCCce------eccCCCccccChhhhcCCCC----
Confidence            9999999999999999999999987     89999999999876543221      24679999999999976542    


Q ss_pred             CCCCcCchhhHHHHHHHHhcCCCCCccccccccccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhh
Q psy4039         432 VNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLW  511 (588)
Q Consensus       432 ~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~  511 (588)
                       .+.++|||||||++|||++|..||........    .....+..+++++.+||.+||+.||++|||++++++       
T Consensus       207 -~~~~~DiwslG~il~el~~g~~pf~~~~~~~~----~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~ell~-------  274 (335)
T 3dls_A          207 -RGPELEMWSLGVTLYTLVFEENPFCELEETVE----AAIHPPYLVSKELMSLVSGLLQPVPERRTTLEKLVT-------  274 (335)
T ss_dssp             -CSHHHHHHHHHHHHHHHHHSSCSCSSGGGGTT----TCCCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHH-------
T ss_pred             -CCCcccchhHHHHHHHHHhCCCchhhHHHHHh----hccCCCcccCHHHHHHHHHHccCChhhCcCHHHHhc-------
Confidence             24578999999999999999999976322111    122335568999999999999999999999999999       


Q ss_pred             cCCccccCC
Q psy4039         512 APKHWLYGA  520 (588)
Q Consensus       512 ~~h~w~~~~  520 (588)
                        |||++..
T Consensus       275 --hp~~~~~  281 (335)
T 3dls_A          275 --DPWVTQP  281 (335)
T ss_dssp             --CTTTTCC
T ss_pred             --CccccCC
Confidence              9999854

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=100.00  E-value=1.5e-43  Score=367.72  Aligned_cols=250  Identities=24%  Similarity=0.344  Sum_probs=203.1

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ..|+..+.||+|+||.||+|++.  |+.||||++.....                 ...+.+.+|+.+++.+    +|||
T Consensus        45 ~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~-----------------~~~~~~~~E~~~l~~l----~h~n  103 (321)
T 2c30_A           45 LLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQ-----------------QRRELLFNEVVIMRDY----QHFN  103 (321)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----------------CSHHHHHHHHHHHTTC----CCTT
T ss_pred             hhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccch-----------------hHHHHHHHHHHHHHhC----CCCC
Confidence            34788889999999999999986  89999999854221                 1233466799999887    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++++....                            ..++||||+ +++|.+++...  .+++..+..++.|++.|
T Consensus       104 iv~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~--~l~~~~~~~i~~qi~~~  153 (321)
T 2c30_A          104 VVEMYKSYLVGE----------------------------ELWVLMEFLQGGALTDIVSQV--RLNEEQIATVCEAVLQA  153 (321)
T ss_dssp             BCCEEEEEEETT----------------------------EEEEEECCCCSCBHHHHHTTC--CCCHHHHHHHHHHHHHH
T ss_pred             cceEEEEEEECC----------------------------EEEEEEecCCCCCHHHHHHhc--CCCHHHHHHHHHHHHHH
Confidence            999999988632                            489999999 68999998754  79999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||++||+||||||+|||++.+     +.+||+|||+++........     .....||+.|+|||++.+..      
T Consensus       154 L~~LH~~~ivH~Dlkp~NIll~~~-----~~~kl~Dfg~~~~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~------  217 (321)
T 2c30_A          154 LAYLHAQGVIHRDIKSDSILLTLD-----GRVKLSDFGFCAQISKDVPK-----RKSLVGTPYWMAPEVISRSL------  217 (321)
T ss_dssp             HHHHHHTTEECCCCSGGGEEECTT-----CCEEECCCTTCEECCSSSCC-----BCCCCSCGGGCCHHHHTTCC------
T ss_pred             HHHHHHCCeecCCCCHHHEEECCC-----CcEEEeeeeeeeecccCccc-----cccccCCccccCHhhhcCCC------
Confidence            999999999999999999999987     79999999999876542211     12467999999999997654      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcccccccccc---ccccC--CCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHh
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE---VNALP--QLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~---~~~~~--~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~  507 (588)
                      ++.++|||||||++|||++|+.||..........   ....+  ..+..+++++++++.+||+.||++|||++++++   
T Consensus       218 ~~~~~Dv~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~---  294 (321)
T 2c30_A          218 YATEVDIWSLGIMVIEMVDGEPPYFSDSPVQAMKRLRDSPPPKLKNSHKVSPVLRDFLERMLVRDPQERATAQELLD---  294 (321)
T ss_dssp             BCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSSCCCCTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHHT---
T ss_pred             CCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhcCCCCCcCccccCCHHHHHHHHHHccCChhhCcCHHHHhc---
Confidence            4578999999999999999999997643221111   11111  123457899999999999999999999999999   


Q ss_pred             hhhhcCCccccCCC
Q psy4039         508 LYLWAPKHWLYGAT  521 (588)
Q Consensus       508 ~~~~~~h~w~~~~~  521 (588)
                            |||+....
T Consensus       295 ------hp~~~~~~  302 (321)
T 2c30_A          295 ------HPFLLQTG  302 (321)
T ss_dssp             ------SGGGGGCC
T ss_pred             ------ChhhccCC
Confidence                  99998443

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=100.00  E-value=1.1e-43  Score=359.39  Aligned_cols=256  Identities=20%  Similarity=0.199  Sum_probs=203.7

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||.||+|.+.  ++.||||++........               ....+.+|+.++..+   .+|||
T Consensus        11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~---------------~~~~~~~e~~~~~~l---~~h~~   72 (289)
T 1x8b_A           11 TEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSV---------------DEQNALREVYAHAVL---GQHSH   72 (289)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSH---------------HHHHHHHHHHHHHHS---CSCTT
T ss_pred             chhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccH---------------HHHHHHHHHHHHHHh---CCCCC
Confidence            78999999999999999999997  89999999864322111               123345677777766   58999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh---cCCCCHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER---CAQLSMHERVLLFTQL  349 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~---~~~l~~~~~~~i~~ql  349 (588)
                      |+++++++.+..                            ..++||||+ +++|.+++...   ...+++.+++.++.||
T Consensus        73 iv~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi  124 (289)
T 1x8b_A           73 VVRYFSAWAEDD----------------------------HMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQV  124 (289)
T ss_dssp             BCCEEEEEEETT----------------------------EEEEEEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred             eeeeeeeeecCC----------------------------eEEEEEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHH
Confidence            999999998632                            489999999 57999999864   2479999999999999


Q ss_pred             HHHHHHHHhCCceeccCCCCcEEEcCCCC--------------CCCCceeeeccccccccCCCCccccccccccccCCcc
Q psy4039         350 LEGVTHLNMHRTAHRDLKSDNILLDCSED--------------NTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVA  415 (588)
Q Consensus       350 ~~gL~yLH~~~IvHrDLKp~NILld~~~~--------------~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~  415 (588)
                      +.||.|||++||+||||||+|||++.+..              .....+||+|||++.......         ...||+.
T Consensus       125 ~~al~~lH~~~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~---------~~~gt~~  195 (289)
T 1x8b_A          125 GRGLRYIHSMSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFKIGDLGHVTRISSPQ---------VEEGDSR  195 (289)
T ss_dssp             HHHHHHHHHTTEECSCCSGGGEEEC--------------------CCCEEECCCTTCEETTCSC---------CCCCCGG
T ss_pred             HHHHHHHHhCCEeecCCCHHHEEEcCCCCCcccccccccccccCCceEEEEcccccccccCCcc---------ccCCCcc
Confidence            99999999999999999999999985421              012589999999998754321         2458999


Q ss_pred             ccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccccccccCCCCCCccHHHHHHHHHhhhhCCCC
Q psy4039         416 LMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSD  495 (588)
Q Consensus       416 Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~  495 (588)
                      |+|||++.+...     ++.++|||||||++|||++|.+|+..............+.++..+++++.+++.+||+.||++
T Consensus       196 y~aPE~~~~~~~-----~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~  270 (289)
T 1x8b_A          196 FLANEVLQENYT-----HLPKADIFALALTVVCAAGAEPLPRNGDQWHEIRQGRLPRIPQVLSQEFTELLKVMIHPDPER  270 (289)
T ss_dssp             GCCHHHHTTCCT-----THHHHHHHHHHHHHHHHTTCCCCCSSSHHHHHHHTTCCCCCSSCCCHHHHHHHHHHTCSSGGG
T ss_pred             ccChhHhcCCCC-----CCchhhHHHHHHHHHHHhcCCCCCcchhHHHHHHcCCCCCCCcccCHHHHHHHHHHhCCCccc
Confidence            999999976421     335899999999999999999887654333333444556677889999999999999999999


Q ss_pred             CCCHHHHHHHHhhhhhcCCccccCC
Q psy4039         496 RPSAELAATVCQLYLWAPKHWLYGA  520 (588)
Q Consensus       496 Rps~~e~l~~L~~~~~~~h~w~~~~  520 (588)
                      |||++++++         |||++..
T Consensus       271 Rps~~~ll~---------h~~~~~~  286 (289)
T 1x8b_A          271 RPSAMALVK---------HSVLLSA  286 (289)
T ss_dssp             SCCHHHHHT---------CTTC---
T ss_pred             CCCHHHHhh---------ChHhhhh
Confidence            999999999         9999743

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=100.00  E-value=1.9e-43  Score=364.34  Aligned_cols=266  Identities=21%  Similarity=0.314  Sum_probs=197.0

Q ss_pred             CCeEEe-eeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         196 DDIQIG-KFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       196 ~~~~~~-~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      +.|.+. +.||+|+||.||+|.+.  ++.||||++......                 ....+.+|+.++..+   .+||
T Consensus        12 ~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-----------------~~~~~~~E~~~l~~~---~~h~   71 (316)
T 2ac3_A           12 DVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGH-----------------IRSRVFREVEMLYQC---QGHR   71 (316)
T ss_dssp             TSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSC-----------------CHHHHHHHHHHHHHT---CCCT
T ss_pred             eeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcch-----------------hHHHHHHHHHHHHHh---cCCC
Confidence            678885 78999999999999986  889999999643211                 223456789988875   5899


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLE  351 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~  351 (588)
                      ||+++++++.+..                            .+++||||+ +|+|.+++.... .+++.++..++.||+.
T Consensus        72 ~i~~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~  122 (316)
T 2ac3_A           72 NVLELIEFFEEED----------------------------RFYLVFEKMRGGSILSHIHKRR-HFNELEASVVVQDVAS  122 (316)
T ss_dssp             TBCCEEEEEEETT----------------------------EEEEEEECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHH
T ss_pred             CeeeEEEEEeeCC----------------------------EEEEEEEcCCCCcHHHHHhccC-CCCHHHHHHHHHHHHH
Confidence            9999999998732                            499999999 589999998764 7999999999999999


Q ss_pred             HHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCcc--ccccccccccCCccccchhHHhcCCCCc
Q psy4039         352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSM--QYSSADIELGGNVALMAPEVALATPGLF  429 (588)
Q Consensus       352 gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~--~~~~~~~~~~GT~~Y~APE~l~~~~~~~  429 (588)
                      ||.|||++||+||||||+|||++.+..  ...+||+|||+++........  .........+||+.|+|||++.+.... 
T Consensus       123 ~l~~lH~~~ivH~dlkp~Nil~~~~~~--~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~-  199 (316)
T 2ac3_A          123 ALDFLHNKGIAHRDLKPENILCEHPNQ--VSPVKICDFDLGSGIKLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEE-  199 (316)
T ss_dssp             HHHHHHHTTCCCCCCCGGGEEESCSSS--SCSEEECCTTCCC-------------------CCSGGGCCHHHHHHTSHH-
T ss_pred             HHHHHHhCCceeCCCCHHHEEEccCCC--cCceEEEEccCccccccCCccccccccccccccCCcCccChHHhhccccc-
Confidence            999999999999999999999987621  134999999999865432110  011112245699999999999752100 


Q ss_pred             cCCCCCcCchhhHHHHHHHHhcCCCCCccccccc---------------ccc--ccccCCCC----CCccHHHHHHHHHh
Q psy4039         430 SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNT---------------DYE--VNALPQLN----TNVPEVMRRLVAKL  488 (588)
Q Consensus       430 ~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~---------------~~~--~~~~~~~~----~~~~~~l~~Li~~~  488 (588)
                      ...++.++|||||||++|||++|+.||.+.....               ...  ......++    ..+++++++||.+|
T Consensus       200 ~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~  279 (316)
T 2ac3_A          200 ASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPACQNMLFESIQEGKYEFPDKDWAHISCAAKDLISKL  279 (316)
T ss_dssp             HHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC----CCHHHHHHHHHHHHHCCCCCCHHHHTTSCHHHHHHHHHH
T ss_pred             ccCCCcccccHhHHHHHHHHHHCCCCCcccccccccccccccchhHHHHHHHHHhccCcccCchhcccCCHHHHHHHHHH
Confidence            0013468999999999999999999997642211               000  01111122    35789999999999


Q ss_pred             hhhCCCCCCCHHHHHHHHhhhhhcCCccccCCCC
Q psy4039         489 LENDPSDRPSAELAATVCQLYLWAPKHWLYGATP  522 (588)
Q Consensus       489 L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~~~  522 (588)
                      |+.||.+|||++++++         |||++...+
T Consensus       280 L~~dP~~Rps~~e~l~---------hp~~~~~~~  304 (316)
T 2ac3_A          280 LVRDAKQRLSAAQVLQ---------HPWVQGCAP  304 (316)
T ss_dssp             SCSSTTTSCCHHHHHH---------STTCC----
T ss_pred             hhCChhhCCCHHHHhc---------ChhhcCCCC
Confidence            9999999999999999         999985433

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=1.2e-43  Score=357.59  Aligned_cols=256  Identities=17%  Similarity=0.191  Sum_probs=209.7

Q ss_pred             ccccccCCeEEeeeecccCceeEEEEEEC-CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCC
Q psy4039         190 VDDVKVDDIQIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENL  268 (588)
Q Consensus       190 ~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l  268 (588)
                      .|.+..++|++.+.||+|+||.||+|.+. +..||||++.....                  ..+.+.+|+.+++.+   
T Consensus         4 ~~~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~------------------~~~~~~~E~~~l~~l---   62 (269)
T 4hcu_A            4 KWVIDPSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM------------------SEEDFIEEAEVMMKL---   62 (269)
T ss_dssp             -CBCCGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTSB------------------CHHHHHHHHHHHHTC---
T ss_pred             cEEeChhhceeeheecCCCccEEEEEEecCCCeEEEEEeccccc------------------CHHHHHHHHHHHHhC---
Confidence            46677899999999999999999999995 78899999953221                  223467799999987   


Q ss_pred             CCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHH
Q psy4039         269 PPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFT  347 (588)
Q Consensus       269 ~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~  347 (588)
                       +||||+++++++.+..                            ..++||||+ +++|.+++......+++..++.++.
T Consensus        63 -~h~~i~~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~  113 (269)
T 4hcu_A           63 -SHPKLVQLYGVCLEQA----------------------------PICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCL  113 (269)
T ss_dssp             -CCTTBCCEEEEECSSS----------------------------SEEEEEECCTTCBHHHHHHTTTTCCCHHHHHHHHH
T ss_pred             -CCCCEeeEEEEEecCC----------------------------ceEEEEEeCCCCcHHHHHHhcCcccCHHHHHHHHH
Confidence             8999999999987632                            389999999 5799999987665799999999999


Q ss_pred             HHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCC
Q psy4039         348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG  427 (588)
Q Consensus       348 ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~  427 (588)
                      |+++||.|||++||+||||||+|||++.+     +.+||+|||+++........    ......||+.|+|||++.+.. 
T Consensus       114 ~i~~~l~~lH~~~i~H~dikp~Nil~~~~-----~~~kl~Dfg~~~~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~-  183 (269)
T 4hcu_A          114 DVCEGMAYLEEACVIHRDLAARNCLVGEN-----QVIKVSDFGMTRFVLDDQYT----SSTGTKFPVKWASPEVFSFSR-  183 (269)
T ss_dssp             HHHHHHHHHHHTTCCCSCCCGGGEEECGG-----GCEEECCTTGGGGBCCHHHH----STTSTTCCGGGCCHHHHHHCC-
T ss_pred             HHHHHHHHHHhCCeecCCcchheEEEcCC-----CCEEeccccccccccccccc----cccCcccccccCCHHHhcCCC-
Confidence            99999999999999999999999999887     78999999999875442111    112345788999999998765 


Q ss_pred             CccCCCCCcCchhhHHHHHHHHhc-CCCCCccccccccc---cccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHH
Q psy4039         428 LFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTDY---EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAA  503 (588)
Q Consensus       428 ~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~~---~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l  503 (588)
                           ++.++||||+||++|||++ |..||.........   .....+..+..+++++.+++.+||+.||++|||+++++
T Consensus       184 -----~~~~~Di~slG~~l~~ll~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll  258 (269)
T 4hcu_A          184 -----YSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRLASTHVYQIMNHCWRERPEDRPAFSRLL  258 (269)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred             -----CCchhhhHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHhcCccCCCCCcCCHHHHHHHHHHccCCcccCcCHHHHH
Confidence                 4568999999999999999 99999764322211   12223445667899999999999999999999999999


Q ss_pred             HHHhhhh
Q psy4039         504 TVCQLYL  510 (588)
Q Consensus       504 ~~L~~~~  510 (588)
                      +.|+...
T Consensus       259 ~~l~~l~  265 (269)
T 4hcu_A          259 RQLAEIA  265 (269)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9887553

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=100.00  E-value=9.7e-44  Score=373.62  Aligned_cols=256  Identities=23%  Similarity=0.280  Sum_probs=206.9

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      +.|++.+.||+|+||.||+|.+.  ++.||||++........  .            ..+.+.+|+.+++.+    +|||
T Consensus        54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~--~------------~~~~~~~E~~~l~~l----~hpn  115 (348)
T 1u5q_A           54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSN--E------------KWQDIIKEVRFLQKL----RHPN  115 (348)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHH--H------------HHHHHHHHHHHHHHC----CCTT
T ss_pred             hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccch--H------------HHHHHHHHHHHHHhC----CCCC
Confidence            56999999999999999999975  88999999964322111  0            123456799999987    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      ||++++++.+..                            ..++||||+.|+|.+++......+++..+..++.|+++||
T Consensus       116 iv~~~~~~~~~~----------------------------~~~lv~e~~~g~l~~~l~~~~~~l~~~~~~~i~~qi~~aL  167 (348)
T 1u5q_A          116 TIQYRGCYLREH----------------------------TAWLVMEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGL  167 (348)
T ss_dssp             BCCEEEEEEETT----------------------------EEEEEEECCSEEHHHHHHHHTSCCCHHHHHHHHHHHHHHH
T ss_pred             EeeEEEEEEECC----------------------------eEEEEEecCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            999999998632                            4899999999999999987666899999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN  433 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~  433 (588)
                      .|||++||+||||||+|||++.+     +.+||+|||+++.....         ....||+.|+|||++.+....   .+
T Consensus       168 ~~LH~~~ivH~Dlkp~NIll~~~-----~~~kL~DfG~a~~~~~~---------~~~~gt~~y~aPE~~~~~~~~---~~  230 (348)
T 1u5q_A          168 AYLHSHNMIHRDVKAGNILLSEP-----GLVKLGDFGSASIMAPA---------NSFVGTPYWMAPEVILAMDEG---QY  230 (348)
T ss_dssp             HHHHHTTCBCCCCSGGGEEEETT-----TEEEECCCTTCBSSSSB---------CCCCSCGGGCCHHHHHTTSSC---CB
T ss_pred             HHHHhCCeeeCCCCHHHEEECCC-----CCEEEeeccCceecCCC---------CcccCCcceeCHhhhccccCC---CC
Confidence            99999999999999999999987     89999999999765331         145799999999999642110   14


Q ss_pred             CCcCchhhHHHHHHHHhcCCCCCccccccccc---ccc-ccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhh
Q psy4039         434 YSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY---EVN-ALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLY  509 (588)
Q Consensus       434 ~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~---~~~-~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~  509 (588)
                      +.++|||||||++|||++|+.||.+.......   ... .....+..+++.++++|.+||+.||++|||++++++     
T Consensus       231 ~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~-----  305 (348)
T 1u5q_A          231 DGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLK-----  305 (348)
T ss_dssp             CTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHTT-----
T ss_pred             CcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcccChhhCcCHHHHhh-----
Confidence            57899999999999999999999764221111   111 111234578999999999999999999999999988     


Q ss_pred             hhcCCccccCCCCC
Q psy4039         510 LWAPKHWLYGATPS  523 (588)
Q Consensus       510 ~~~~h~w~~~~~~~  523 (588)
                          |||+....+.
T Consensus       306 ----h~~~~~~~~~  315 (348)
T 1u5q_A          306 ----HRFVLRERPP  315 (348)
T ss_dssp             ----CHHHHSCCCT
T ss_pred             ----ChhhhccCCc
Confidence                9999865543

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=100.00  E-value=2.1e-43  Score=380.44  Aligned_cols=252  Identities=23%  Similarity=0.303  Sum_probs=200.4

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      .+|++.+.||+|+||+||+|++.  ++.||||++...                     .....+|+.+|+.+    +|||
T Consensus        54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~---------------------~~~~~~E~~il~~l----~hpn  108 (420)
T 1j1b_A           54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQD---------------------KRFKNRELQIMRKL----DHCN  108 (420)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC---------------------TTSCCHHHHHHHTC----CCTT
T ss_pred             ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEeccc---------------------chhHHHHHHHHHHc----CCCC
Confidence            57999999999999999999996  889999998431                     22345699999987    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHH---hcCCCCHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRE---RCAQLSMHERVLLFTQLL  350 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~---~~~~l~~~~~~~i~~ql~  350 (588)
                      ||+++++|....                      .......+++||||+.++|.+.+..   ....+++..+..++.||+
T Consensus       109 iv~l~~~~~~~~----------------------~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~qi~  166 (420)
T 1j1b_A          109 IVRLRYFFYSSG----------------------EKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLF  166 (420)
T ss_dssp             BCCEEEEEEEEE----------------------TTTTEEEEEEEEECCCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             ccceeeEEeccC----------------------CCCcceeEEeehhcccccHHHHHHHHhhccCCCCHHHHHHHHHHHH
Confidence            999999986532                      1122335789999998888877764   245799999999999999


Q ss_pred             HHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCcc
Q psy4039         351 EGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFS  430 (588)
Q Consensus       351 ~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~  430 (588)
                      +||.|||++||+||||||+|||++.+.    +.+||+|||+|+....+..      .....||+.|+|||++.+...   
T Consensus       167 ~aL~~LH~~~ivHrDlkp~NILl~~~~----~~~kl~DFG~a~~~~~~~~------~~~~~~t~~y~aPE~~~~~~~---  233 (420)
T 1j1b_A          167 RSLAYIHSFGICHRDIKPQNLLLDPDT----AVLKLCDFGSAKQLVRGEP------NVSYICSRYYRAPELIFGATD---  233 (420)
T ss_dssp             HHHHHHHTTTEECSCCSGGGEEEETTT----TEEEECCCTTCEECCTTCC------CCSCCSCTTSCCHHHHTTCSS---
T ss_pred             HHHHHHHHCCccccCCChhhEEEeCCC----CeEEeccchhhhhcccCCC------ceeeeeCCCcCCHHHHcCCCC---
Confidence            999999999999999999999998652    5789999999987644221      124578999999999975421   


Q ss_pred             CCCCCcCchhhHHHHHHHHhcCCCCCcccccccc----------------------ccccccCC---------CCCCccH
Q psy4039         431 FVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD----------------------YEVNALPQ---------LNTNVPE  479 (588)
Q Consensus       431 ~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~----------------------~~~~~~~~---------~~~~~~~  479 (588)
                        ++.++|||||||++|||++|+.||.+......                      +.....+.         ++..+++
T Consensus       234 --~~~~~DiwSlG~il~ell~G~~pf~~~~~~~~l~~i~~~lg~p~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  311 (420)
T 1j1b_A          234 --YTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPP  311 (420)
T ss_dssp             --CCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHHHHCSCCCCCCCCCCCCCCHHHHSCTTSCH
T ss_pred             --CCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhChhhhhhccCccCCCCHHHhcCCCCCH
Confidence              45789999999999999999999976421100                      00001111         2346789


Q ss_pred             HHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCcccc
Q psy4039         480 VMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLY  518 (588)
Q Consensus       480 ~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~  518 (588)
                      ++.+||.+||+.||.+|||+.|+++         |||++
T Consensus       312 ~~~~Li~~~L~~dP~~R~t~~e~l~---------hp~f~  341 (420)
T 1j1b_A          312 EAIALCSRLLEYTPTARLTPLEACA---------HSFFD  341 (420)
T ss_dssp             HHHHHHHHHSCSSGGGSCCHHHHHT---------SGGGG
T ss_pred             HHHHHHHHhccCChhHCCCHHHHhC---------CHhhc
Confidence            9999999999999999999999999         99997

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=100.00  E-value=4e-44  Score=370.67  Aligned_cols=284  Identities=21%  Similarity=0.289  Sum_probs=202.0

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||.||+|++.  ++.||||++......                ...+.+.+|+.+++.+    +|||
T Consensus         6 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~----------------~~~~~~~~E~~~l~~l----~hpn   65 (332)
T 3qd2_B            6 TDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRE----------------LAREKVMREVKALAKL----EHPG   65 (332)
T ss_dssp             HHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTT----------------THHHHHHHHHHHHTSC----CCTT
T ss_pred             hcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCch----------------hHHHHHHHHHHHHHhC----CCCC
Confidence            78999999999999999999997  889999999642211                1224467799999887    8999


Q ss_pred             eEEEeeeeeccCCCC----------CCCCCcCC----------CCCCCcc---------CCCCCCCCCceEEEEEecC-C
Q psy4039         274 VVVMHFAFTDFVPSI----------PDSSLIYP----------SALPARL---------NPTGGYGRNMSLFILMKKY-N  323 (588)
Q Consensus       274 IV~l~~~~~~~~~~~----------~~~~~l~~----------~~~~~~~---------~~~gg~~~~~~l~lvme~~-~  323 (588)
                      ||+++++|.+..+..          ......++          .......         ...........+++||||+ +
T Consensus        66 iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~  145 (332)
T 3qd2_B           66 IVRYFNAWLETPPEKWQEEMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRK  145 (332)
T ss_dssp             BCCEEEEEEECCSCHHHHHHHC--------------------------------------------CCCEEEEEEECCCS
T ss_pred             EeeEEEEEEEeccchhhhhhhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCC
Confidence            999999987643210          00000000          0000000         0000112234589999999 5


Q ss_pred             CcHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCcc
Q psy4039         324 TDLRNYLRERC--AQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSM  401 (588)
Q Consensus       324 gsL~~~L~~~~--~~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~  401 (588)
                      ++|.+++....  ...++..++.++.||+.||.|||++||+||||||+|||++.+     +.+||+|||+++........
T Consensus       146 ~~L~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~-----~~~kL~DfG~a~~~~~~~~~  220 (332)
T 3qd2_B          146 ENLKDWMNRRCSLEDREHGVCLHIFIQIAEAVEFLHSKGLMHRDLKPSNIFFTMD-----DVVKVGDFGLVTAMDQDEEE  220 (332)
T ss_dssp             SCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTT-----CCEEECCCTTCEECSCC---
T ss_pred             CCHHHHHhcccCccchhhHHHHHHHHHHHHHHHHHHhCCeeecCCCcccEEEeCC-----CCEEEeecCcccccccchhh
Confidence            79999998652  246777899999999999999999999999999999999987     79999999999886553211


Q ss_pred             cc-------ccccccccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccc-ccccccCCC
Q psy4039         402 QY-------SSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD-YEVNALPQL  473 (588)
Q Consensus       402 ~~-------~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~-~~~~~~~~~  473 (588)
                      ..       ........||+.|+|||++.+..      ++.++|||||||++|||++|..|+........ ......+..
T Consensus       221 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~------~~~~~Di~slG~il~el~~~~~~~~~~~~~~~~~~~~~~~~~  294 (332)
T 3qd2_B          221 QTVLTPMPAYATHTGQVGTKLYMSPEQIHGNN------YSHKVDIFSLGLILFELLYSFSTQMERVRIITDVRNLKFPLL  294 (332)
T ss_dssp             -----------CCCSCC-CGGGSCHHHHHCCC------CCTHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHTTCCCHH
T ss_pred             ccccccccccccccccCCCcCccChHHhcCCC------CcchhhHHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcc
Confidence            00       11223467999999999998765      45789999999999999999888754321111 111122222


Q ss_pred             CCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccC
Q psy4039         474 NTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       474 ~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~  519 (588)
                      +...++++.+||.+||+.||.+|||++++++         |||++.
T Consensus       295 ~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~---------~~~f~~  331 (332)
T 3qd2_B          295 FTQKYPQEHMMVQDMLSPSPTERPEATDIIE---------NAIFEN  331 (332)
T ss_dssp             HHHHCHHHHHHHHHHHCSSGGGSCCHHHHHH---------STTCCC
T ss_pred             cccCChhHHHHHHHHccCCCCcCCCHHHHhh---------chhhhc
Confidence            2345678899999999999999999999999         999963

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=1e-43  Score=377.65  Aligned_cols=276  Identities=20%  Similarity=0.239  Sum_probs=200.9

Q ss_pred             ccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCC
Q psy4039         194 KVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPH  271 (588)
Q Consensus       194 ~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~H  271 (588)
                      ..++|++++.||+|+||+||+|.+.  ++.||||++...                     .....+|+.+++.+    +|
T Consensus         5 ~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~---------------------~~~~~~E~~il~~l----~h   59 (383)
T 3eb0_A            5 SSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQD---------------------PRYKNRELDIMKVL----DH   59 (383)
T ss_dssp             -CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECC---------------------TTSCCHHHHHHTTC----CC
T ss_pred             ccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecC---------------------cchHHHHHHHHHHc----CC
Confidence            3478999999999999999999986  889999998531                     22334699999887    99


Q ss_pred             CceEEEeeeeeccCCCCCC------CCCcCCCCCCCc----cCCCCCCCCCceEEEEEecCCCcHHHHHHH---hcCCCC
Q psy4039         272 PNVVVMHFAFTDFVPSIPD------SSLIYPSALPAR----LNPTGGYGRNMSLFILMKKYNTDLRNYLRE---RCAQLS  338 (588)
Q Consensus       272 pNIV~l~~~~~~~~~~~~~------~~~l~~~~~~~~----~~~~gg~~~~~~l~lvme~~~gsL~~~L~~---~~~~l~  338 (588)
                      ||||+++++|.........      ....+.......    ....-.......+++||||++|+|.+.+..   ....++
T Consensus        60 pnIv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~l~  139 (383)
T 3eb0_A           60 VNIIKLVDYFYTTGDEEPKPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVPDTLHKVLKSFIRSGRSIP  139 (383)
T ss_dssp             TTBCCEEEEEEEC-------------------------------------CCEEEEEECCCSEEHHHHHHHHHHTTCCCC
T ss_pred             CCccchhheeeecCcccccccccccccccccccccccccccccccccCCCceEEEEEEecCCccHHHHHHHHHhcCCCCC
Confidence            9999999999764210000      000000000000    000000023346899999999999888874   245799


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccc
Q psy4039         339 MHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMA  418 (588)
Q Consensus       339 ~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~A  418 (588)
                      +..+..++.||+.||.|||++||+||||||+|||++.+.    +.+||+|||+|+.......      .....||+.|+|
T Consensus       140 ~~~~~~i~~qi~~aL~~LH~~gi~H~Dikp~Nil~~~~~----~~~kl~Dfg~a~~~~~~~~------~~~~~~t~~y~a  209 (383)
T 3eb0_A          140 MNLISIYIYQLFRAVGFIHSLGICHRDIKPQNLLVNSKD----NTLKLCDFGSAKKLIPSEP------SVAYICSRFYRA  209 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTEECSCCCGGGEEEETTT----TEEEECCCTTCEECCTTSC------CCCCCCCSSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHCcCccCccCHHHEEEcCCC----CcEEEEECCCCcccCCCCC------CcCcccCCCccC
Confidence            999999999999999999999999999999999998431    7899999999987644221      124568999999


Q ss_pred             hhHHhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccc----------------------ccccccC-----
Q psy4039         419 PEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD----------------------YEVNALP-----  471 (588)
Q Consensus       419 PE~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~----------------------~~~~~~~-----  471 (588)
                      ||++.+...     ++.++||||+||++|||++|+.||.+......                      +.....+     
T Consensus       210 PE~~~~~~~-----~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~  284 (383)
T 3eb0_A          210 PELMLGATE-----YTPSIDLWSIGCVFGELILGKPLFSGETSIDQLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKAK  284 (383)
T ss_dssp             HHHHTTCSS-----CCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCCC
T ss_pred             HHHhcCCCC-----CCcchhhhhHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhCcccccccCCccCcc
Confidence            999876431     45789999999999999999999976321110                      0000011     


Q ss_pred             ----CCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCcccc
Q psy4039         472 ----QLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLY  518 (588)
Q Consensus       472 ----~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~  518 (588)
                          .++..+|+++.+||.+||+.||.+|||+.|+++         |||++
T Consensus       285 ~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~---------hp~f~  326 (383)
T 3eb0_A          285 DWRKILPEGTPSLAIDLLEQILRYEPDLRINPYEAMA---------HPFFD  326 (383)
T ss_dssp             CHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHT---------SGGGH
T ss_pred             cHHhhCCCCCCHHHHHHHHHHccCChhhCCCHHHHhc---------CHHHH
Confidence                134568899999999999999999999999999         99997

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=100.00  E-value=1.1e-43  Score=389.02  Aligned_cols=254  Identities=25%  Similarity=0.335  Sum_probs=205.7

Q ss_pred             ccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCC
Q psy4039         194 KVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPH  271 (588)
Q Consensus       194 ~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~H  271 (588)
                      ..++|++.+.||+|+||.||+|.+.  ++.||||++........              .....+.+|+.+++.+    +|
T Consensus        24 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~--------------~~~~~~~~E~~~l~~l----~h   85 (484)
T 3nyv_A           24 FSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQK--------------TDKESLLREVQLLKQL----DH   85 (484)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBS--------------SCHHHHHHHHHHHTTC----CC
T ss_pred             ccCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccc--------------hHHHHHHHHHHHHHhC----CC
Confidence            3378999999999999999999997  88999999964332211              1234567799999887    89


Q ss_pred             CceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy4039         272 PNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLL  350 (588)
Q Consensus       272 pNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~  350 (588)
                      ||||+++++|.+..                            ..++||||+ +|+|.+++.... .+++..++.++.||+
T Consensus        86 pniv~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~i~~qi~  136 (484)
T 3nyv_A           86 PNIMKLYEFFEDKG----------------------------YFYLVGEVYTGGELFDEIISRK-RFSEVDAARIIRQVL  136 (484)
T ss_dssp             TTBCCEEEEEECSS----------------------------EEEEEECCCCSCBHHHHHHTCS-CCBHHHHHHHHHHHH
T ss_pred             CCCCcEEEEEEeCC----------------------------EEEEEEecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence            99999999998632                            499999999 689999997654 799999999999999


Q ss_pred             HHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCcc
Q psy4039         351 EGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFS  430 (588)
Q Consensus       351 ~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~  430 (588)
                      .||.|||++||+||||||+|||++....  .+.+||+|||+|+.......      ....+||+.|+|||++.+.     
T Consensus       137 ~~l~~lH~~~ivH~Dlkp~Nil~~~~~~--~~~~kl~Dfg~a~~~~~~~~------~~~~~gt~~y~aPE~~~~~-----  203 (484)
T 3nyv_A          137 SGITYMHKNKIVHRDLKPENLLLESKSK--DANIRIIDFGLSTHFEASKK------MKDKIGTAYYIAPEVLHGT-----  203 (484)
T ss_dssp             HHHHHHHHTTCCCSCCCGGGEEESSSST--TCCEEECCTTHHHHBCCCCS------HHHHTTGGGTCCHHHHHTC-----
T ss_pred             HHHHHHHHCCeeeCCCCHHHEEEecCCC--CCcEEEEeeeeeEEcccccc------cccCCCCccccCceeecCC-----
Confidence            9999999999999999999999964311  17899999999987654322      1245799999999999753     


Q ss_pred             CCCCCcCchhhHHHHHHHHhcCCCCCccccccccccc------cccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHH
Q psy4039         431 FVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV------NALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAAT  504 (588)
Q Consensus       431 ~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~------~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~  504 (588)
                        ++.++||||+||++|+|++|.+||.+.........      ....+.+..+|+++++||.+||+.||.+|||++++++
T Consensus       204 --~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~  281 (484)
T 3nyv_A          204 --YDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVEKGKYTFELPQWKKVSESAKDLIRKMLTYVPSMRISARDALD  281 (484)
T ss_dssp             --CCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCSGGGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             --CCCcceeHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHHCCCChhHCcCHHHHhh
Confidence              45789999999999999999999977432211111      0111223468899999999999999999999999999


Q ss_pred             HHhhhhhcCCcccc
Q psy4039         505 VCQLYLWAPKHWLY  518 (588)
Q Consensus       505 ~L~~~~~~~h~w~~  518 (588)
                               |||++
T Consensus       282 ---------h~~~~  286 (484)
T 3nyv_A          282 ---------HEWIQ  286 (484)
T ss_dssp             ---------SHHHH
T ss_pred             ---------Chhhc
Confidence                     99998

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=100.00  E-value=8.6e-44  Score=361.74  Aligned_cols=258  Identities=20%  Similarity=0.219  Sum_probs=190.0

Q ss_pred             ccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCC
Q psy4039         192 DVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLP  269 (588)
Q Consensus       192 ~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~  269 (588)
                      ++..++|++.+.||+|+||.||+|.+.  ++.||||++.....   ...            ..+.+.++...++.    .
T Consensus         3 ~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~------------~~~~~~~~~~~~~~----~   63 (290)
T 3fme_A            3 EVKADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVN---SQE------------QKRLLMDLDISMRT----V   63 (290)
T ss_dssp             CCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---C---HHH------------HHHHHHHHHHHHTT----C
T ss_pred             cccHHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccC---cHH------------HHHHHHHHHHHHHh----C
Confidence            566799999999999999999999995  89999999853211   100            11112223333444    3


Q ss_pred             CCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHH---hcCCCCHHHHHHHH
Q psy4039         270 PHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRE---RCAQLSMHERVLLF  346 (588)
Q Consensus       270 ~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~---~~~~l~~~~~~~i~  346 (588)
                      +||||+++++++.+..                            ..++||||++|+|.+++..   ....+++..++.++
T Consensus        64 ~h~~iv~~~~~~~~~~----------------------------~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~i~  115 (290)
T 3fme_A           64 DCPFTVTFYGALFREG----------------------------DVWICMELMDTSLDKFYKQVIDKGQTIPEDILGKIA  115 (290)
T ss_dssp             CCTTBCCEEEEEECSS----------------------------SEEEEEECCSEEHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred             CCCeEEEEeeeeeccC----------------------------CEEEEEehhccchHHHHHHHHhcCCCCCHHHHHHHH
Confidence            9999999999998632                            3899999999999888875   34579999999999


Q ss_pred             HHHHHHHHHHHhC-CceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcC
Q psy4039         347 TQLLEGVTHLNMH-RTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALAT  425 (588)
Q Consensus       347 ~ql~~gL~yLH~~-~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~  425 (588)
                      .|++.||.|||++ ||+||||||+|||++.+     +.+||+|||+++........      ....||+.|+|||++...
T Consensus       116 ~qi~~~l~~lH~~~~i~H~dlkp~Nil~~~~-----~~~kl~Dfg~~~~~~~~~~~------~~~~~t~~y~aPE~~~~~  184 (290)
T 3fme_A          116 VSIVKALEHLHSKLSVIHRDVKPSNVLINAL-----GQVKMCDFGISGYLVDDVAK------DIDAGCKPYMAPERINPE  184 (290)
T ss_dssp             HHHHHHHHHHHHHSCCCCCCCSGGGCEECTT-----CCEEBCCC---------------------CCCCCCSCHHHHSCC
T ss_pred             HHHHHHHHHHhhcCCeecCCCCHHHEEECCC-----CCEEEeecCCcccccccccc------cccCCCccccChhhcChh
Confidence            9999999999998 99999999999999987     79999999999775442211      134699999999998432


Q ss_pred             CCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccc-----cccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHH
Q psy4039         426 PGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNT-----DYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE  500 (588)
Q Consensus       426 ~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~-----~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~  500 (588)
                      ..  ...++.++|||||||++|||++|+.||.......     ..........+..+++++.+++.+||+.||++|||++
T Consensus       185 ~~--~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~  262 (290)
T 3fme_A          185 LN--QKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQVVEEPSPQLPADKFSAEFVDFTSQCLKKNSKERPTYP  262 (290)
T ss_dssp             TT--C--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHHHHHHHHSCCCCCCTTTSCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             hc--CcCCCcHHHHHHHHHHHHHHHHCCCCccccCchHHHHHHHhccCCCCcccccCCHHHHHHHHHHhhcChhhCcCHH
Confidence            11  1114568999999999999999999997521110     0111111222356899999999999999999999999


Q ss_pred             HHHHHHhhhhhcCCcccc
Q psy4039         501 LAATVCQLYLWAPKHWLY  518 (588)
Q Consensus       501 e~l~~L~~~~~~~h~w~~  518 (588)
                      ++++         |||++
T Consensus       263 e~l~---------hp~f~  271 (290)
T 3fme_A          263 ELMQ---------HPFFT  271 (290)
T ss_dssp             HHTT---------SHHHH
T ss_pred             HHHh---------Ccccc
Confidence            9988         99998

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=100.00  E-value=5.3e-44  Score=370.81  Aligned_cols=265  Identities=18%  Similarity=0.187  Sum_probs=204.9

Q ss_pred             CCccccccCCeEEeeeecccCceeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcC
Q psy4039         188 PDVDDVKVDDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVEN  267 (588)
Q Consensus       188 ~~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~  267 (588)
                      ..++.+..++|++.+.||+|+||+||+|++.++.||||++....     .             ......+|+.+++.+  
T Consensus        16 ~~n~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~vavK~~~~~~-----~-------------~~~~~~~E~~~l~~l--   75 (322)
T 3soc_A           16 TENLYFQSMPLQLLEVKARGRFGCVWKAQLLNEYVAVKIFPIQD-----K-------------QSWQNEYEVYSLPGM--   75 (322)
T ss_dssp             CCCEEETTEEEEEEEEEECSTTCEEEEEEETTEEEEEEEECGGG-----H-------------HHHHHHHHHHTSTTC--
T ss_pred             ccccccchhhchhhheecccCceEEEEEEECCCEEEEEEeecCc-----h-------------HHHHHHHHHHHHhcC--
Confidence            45666788999999999999999999999999999999984311     0             112234477778776  


Q ss_pred             CCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHH
Q psy4039         268 LPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLF  346 (588)
Q Consensus       268 l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~  346 (588)
                        +|||||++++++.+..                        .....+++||||+ +|+|.+++...  .+++..++.++
T Consensus        76 --~hpniv~~~~~~~~~~------------------------~~~~~~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~i~  127 (322)
T 3soc_A           76 --KHENILQFIGAEKRGT------------------------SVDVDLWLITAFHEKGSLSDFLKAN--VVSWNELCHIA  127 (322)
T ss_dssp             --CCTTBCCEEEEEEEEC------------------------SSSEEEEEEEECCTTCBHHHHHHHC--CBCHHHHHHHH
T ss_pred             --CCCCchhhcceeccCC------------------------CCCceEEEEEecCCCCCHHHHHHhc--CCCHHHHHHHH
Confidence              8999999999998742                        1123589999999 57999999875  79999999999


Q ss_pred             HHHHHHHHHHHhC----------CceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccc
Q psy4039         347 TQLLEGVTHLNMH----------RTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVAL  416 (588)
Q Consensus       347 ~ql~~gL~yLH~~----------~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y  416 (588)
                      .|++.||.|||+.          ||+||||||+|||++.+     +.+||+|||+|+.........   ......||+.|
T Consensus       128 ~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~~-----~~~kL~DFg~a~~~~~~~~~~---~~~~~~gt~~y  199 (322)
T 3soc_A          128 ETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNN-----LTACIADFGLALKFEAGKSAG---DTHGQVGTRRY  199 (322)
T ss_dssp             HHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEECTT-----CCEEECCCTTCEEECTTSCCC---CCTTCCCCGGG
T ss_pred             HHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEECCC-----CeEEEccCCcccccccccCcc---ccccCccCccc
Confidence            9999999999999          99999999999999987     899999999998765432211   11246799999


Q ss_pred             cchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccc--------------------cccccCCCC--
Q psy4039         417 MAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY--------------------EVNALPQLN--  474 (588)
Q Consensus       417 ~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~--------------------~~~~~~~~~--  474 (588)
                      +|||++.+.... ...++.++|||||||++|||++|+.||.+.......                    .....+.++  
T Consensus       200 ~aPE~~~~~~~~-~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (322)
T 3soc_A          200 MAPEVLEGAINF-QRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQHPSLEDMQEVVVHKKKRPVLRDY  278 (322)
T ss_dssp             CCHHHHTTCCCC-CHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHHHCSSCCHHHHHHHHTTSCCCCCCCGG
T ss_pred             cCHhhccccccc-CcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhhhhccCCchhhhhhhhhcccCCCCcccc
Confidence            999999764311 111335789999999999999999999763221100                    011111111  


Q ss_pred             ---CCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhh
Q psy4039         475 ---TNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLY  509 (588)
Q Consensus       475 ---~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~  509 (588)
                         ...++++.+||.+||+.||++|||++++++.|+.+
T Consensus       279 ~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l  316 (322)
T 3soc_A          279 WQKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQM  316 (322)
T ss_dssp             GGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence               12356699999999999999999999999988754

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=100.00  E-value=1.2e-43  Score=374.42  Aligned_cols=259  Identities=21%  Similarity=0.263  Sum_probs=205.4

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||.||+|.+.  +..||||++....   .. .            ..+.+.+|+.+++.+    +|||
T Consensus        27 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~---~~-~------------~~~~~~~E~~~l~~l----~h~n   86 (364)
T 3qyz_A           27 PRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFE---HQ-T------------YCQRTLREIKILLRF----RHEN   86 (364)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTT---CH-H------------HHHHHHHHHHHHHHC----CCTT
T ss_pred             ccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEecccc---Cc-H------------HHHHHHHHHHHHHhc----CCCC
Confidence            68999999999999999999987  7899999985321   10 0            123456799999988    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      |+++++++....                       .......|+|||+++|+|.+++...  .+++.++..++.||+.||
T Consensus        87 iv~~~~~~~~~~-----------------------~~~~~~~~iv~e~~~~~L~~~l~~~--~~~~~~~~~i~~qi~~aL  141 (364)
T 3qyz_A           87 IIGINDIIRAPT-----------------------IEQMKDVYIVQDLMETDLYKLLKTQ--HLSNDHICYFLYQILRGL  141 (364)
T ss_dssp             BCCCCEEECCSS-----------------------TTTCCCEEEEEECCSEEHHHHHHHC--CCCHHHHHHHHHHHHHHH
T ss_pred             CccceeEEecCC-----------------------ccccceEEEEEcccCcCHHHHHHhC--CCCHHHHHHHHHHHHHHH
Confidence            999999987632                       1122348999999999999999775  799999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN  433 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~  433 (588)
                      .|||++||+||||||+|||++.+     +.+||+|||+++........  .......+||+.|+|||++.+...     +
T Consensus       142 ~~LH~~~ivH~Dikp~NIl~~~~-----~~~kl~Dfg~a~~~~~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~-----~  209 (364)
T 3qyz_A          142 KYIHSANVLHRDLKPSNLLLNTT-----CDLKICDFGLARVADPDHDH--TGFLTEYVATRWYRAPEIMLNSKG-----Y  209 (364)
T ss_dssp             HHHHHTTEECCCCCGGGEEECTT-----CCEEECCCTTCEECCGGGCB--CCTTCCCCSCGGGCCHHHHHTBCS-----C
T ss_pred             HHHHHCCeecCCCChHhEEECCC-----CCEEEEeCcceEecCCCCCc--cccccccccccCCCCCHHhcCCCC-----C
Confidence            99999999999999999999987     78999999999876542211  111124679999999998765431     4


Q ss_pred             CCcCchhhHHHHHHHHhcCCCCCccccccccccc---------------------------------cccCCCCCCccHH
Q psy4039         434 YSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV---------------------------------NALPQLNTNVPEV  480 (588)
Q Consensus       434 ~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~  480 (588)
                      +.++|||||||++|||++|+.||.+.........                                 ..+......++++
T Consensus       210 ~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (364)
T 3qyz_A          210 TKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSK  289 (364)
T ss_dssp             STHHHHHHHHHHHHHHHHSSCSSCCSSGGGHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHH
T ss_pred             CcchhHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhhhhhHHHHHHhcCCccCCCHHHhCCCCCHH
Confidence            5789999999999999999999976421111000                                 0001122467899


Q ss_pred             HHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccCC
Q psy4039         481 MRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGA  520 (588)
Q Consensus       481 l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~  520 (588)
                      +.+||.+||+.||.+|||++++++         |||++..
T Consensus       290 ~~~li~~~L~~dP~~R~t~~e~l~---------hp~~~~~  320 (364)
T 3qyz_A          290 ALDLLDKMLTFNPHKRIEVEQALA---------HPYLEQY  320 (364)
T ss_dssp             HHHHHHHHTCSSTTTSCCHHHHHT---------SGGGTTT
T ss_pred             HHHHHHHHcCCChhhCCCHHHHhc---------Ccchhhc
Confidence            999999999999999999999999         9999854

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.5e-43  Score=372.77  Aligned_cols=264  Identities=21%  Similarity=0.370  Sum_probs=211.2

Q ss_pred             CccccccCCeEEeeeecccCceeEEEEEE-----CCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHh
Q psy4039         189 DVDDVKVDDIQIGKFIAKGTNAVVYEATF-----RGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMN  263 (588)
Q Consensus       189 ~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~-----~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~  263 (588)
                      ....+.+++|++.+.||+|+||.||+|.+     .++.||||++.......             .......+.+|+.+++
T Consensus        47 ~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~-------------~~~~~~~~~~E~~~l~  113 (355)
T 1vzo_A           47 HAEKVGIENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQ-------------KAKTTEHTRTERQVLE  113 (355)
T ss_dssp             CCCCCCGGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEE-------------EESSGGGCCCHHHHHH
T ss_pred             ccccccccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhh-------------hhhHHHHHHHHHHHHH
Confidence            33456678999999999999999999998     38899999985321110             0113345677999999


Q ss_pred             hhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHH
Q psy4039         264 SVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHER  342 (588)
Q Consensus       264 ~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~  342 (588)
                      .+   ..||||+++++++.+..                            .+++||||+ +|+|.+++.... .+++..+
T Consensus       114 ~l---~~h~~iv~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~  161 (355)
T 1vzo_A          114 HI---RQSPFLVTLHYAFQTET----------------------------KLHLILDYINGGELFTHLSQRE-RFTEHEV  161 (355)
T ss_dssp             HH---HTCTTBCCEEEEEEETT----------------------------EEEEEECCCCSCBHHHHHHHHS-CCCHHHH
T ss_pred             Hc---cCCCceeEEEEEEeeCc----------------------------eEEEEeecCCCCCHHHHHHHcC-CCCHHHH
Confidence            87   36999999999987632                            489999999 579999998765 7999999


Q ss_pred             HHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHH
Q psy4039         343 VLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVA  422 (588)
Q Consensus       343 ~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l  422 (588)
                      ..++.||+.||.|||++||+||||||+|||++.+     +.+||+|||+++.......    ......+||+.|+|||++
T Consensus       162 ~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~-----~~~kl~DfG~a~~~~~~~~----~~~~~~~gt~~y~aPE~~  232 (355)
T 1vzo_A          162 QIYVGEIVLALEHLHKLGIIYRDIKLENILLDSN-----GHVVLTDFGLSKEFVADET----ERAYDFCGTIEYMAPDIV  232 (355)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTT-----SCEEESCSSEEEECCGGGG----GGGCGGGSCCTTCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCC-----CcEEEeeCCCCeecccCCC----CcccCcccCcCccChhhh
Confidence            9999999999999999999999999999999987     8999999999986543211    112246799999999999


Q ss_pred             hcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccc------cccccCCCCCCccHHHHHHHHHhhhhCCCCC
Q psy4039         423 LATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY------EVNALPQLNTNVPEVMRRLVAKLLENDPSDR  496 (588)
Q Consensus       423 ~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~------~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~R  496 (588)
                      .+....    ++.++|||||||++|||++|+.||.........      .....+..+..+++.+++||.+||+.||.+|
T Consensus       233 ~~~~~~----~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R  308 (355)
T 1vzo_A          233 RGGDSG----HDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEPPYPQEMSALAKDLIQRLLMKDPKKR  308 (355)
T ss_dssp             TTCC-------CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSGGGS
T ss_pred             cCCCCC----CCchhhHHHHHHHHHHHHHCCCCCccCCccchHHHHHHHHhccCCCCCcccCHHHHHHHHHHhhhCHHHh
Confidence            764322    346899999999999999999999753221111      1123455677899999999999999999999


Q ss_pred             C-----CHHHHHHHHhhhhhcCCccccC
Q psy4039         497 P-----SAELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       497 p-----s~~e~l~~L~~~~~~~h~w~~~  519 (588)
                      |     +++++++         |||++.
T Consensus       309 ~~~~~~s~~ell~---------h~~f~~  327 (355)
T 1vzo_A          309 LGCGPRDADEIKE---------HLFFQK  327 (355)
T ss_dssp             TTSSTTTHHHHHT---------SGGGTT
T ss_pred             cCCCCCCHHHHHc---------Ccchhc
Confidence            9     9999988         999974

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=100.00  E-value=2.1e-43  Score=359.58  Aligned_cols=252  Identities=23%  Similarity=0.318  Sum_probs=198.4

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|.+.+.||+|+||.||+|.+.  +..||||++.....                ....+.+.+|+.+++.+    +|||
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~----------------~~~~~~~~~E~~~l~~l----~hp~   81 (285)
T 3is5_A           22 DLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRS----------------QVPMEQIEAEIEVLKSL----DHPN   81 (285)
T ss_dssp             HHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGC----------------CSCHHHHHHHHHHHHTC----CCTT
T ss_pred             hheeecceeccCCCeEEEEEEEccCCceEEEEEeecccc----------------chhHHHHHHHHHHHHhC----CCch
Confidence            78999999999999999999987  78999999854221                11234567799999987    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh---cCCCCHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER---CAQLSMHERVLLFTQL  349 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~---~~~l~~~~~~~i~~ql  349 (588)
                      |+++++++.+..                            ..++||||+ +|+|.+++...   ...+++..++.++.|+
T Consensus        82 iv~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi  133 (285)
T 3is5_A           82 IIKIFEVFEDYH----------------------------NMYIVMETCEGGELLERIVSAQARGKALSEGYVAELMKQM  133 (285)
T ss_dssp             BCCEEEEEECSS----------------------------EEEEEECCCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred             HHhHHHheecCC----------------------------eEEEEEEeCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHH
Confidence            999999987632                            489999999 57999998653   3579999999999999


Q ss_pred             HHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCc
Q psy4039         350 LEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF  429 (588)
Q Consensus       350 ~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~  429 (588)
                      +.||.|||++||+||||||+|||++.+..  .+.+||+|||+++.......      .....||+.|+|||++.+.    
T Consensus       134 ~~~L~~LH~~~ivH~dikp~NIl~~~~~~--~~~~kl~Dfg~a~~~~~~~~------~~~~~~t~~y~aPE~~~~~----  201 (285)
T 3is5_A          134 MNALAYFHSQHVVHKDLKPENILFQDTSP--HSPIKIIDFGLAELFKSDEH------STNAAGTALYMAPEVFKRD----  201 (285)
T ss_dssp             HHHHHHHHHTTCCCCCCSGGGEEESSSST--TCCEEECCCCCCCC----------------CTTGGGCCHHHHTTC----
T ss_pred             HHHHHHHHhCCEEECCCCHHHEEEecCCC--CCCEEEEeeecceecCCccc------CcCcccccCcCChHHhccC----
Confidence            99999999999999999999999965321  16899999999976544221      1245699999999998542    


Q ss_pred             cCCCCCcCchhhHHHHHHHHhcCCCCCccccccccc-----cccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHH
Q psy4039         430 SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY-----EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAAT  504 (588)
Q Consensus       430 ~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~-----~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~  504 (588)
                         ++.++|||||||++|||++|+.||.+.......     ...........+++++.+|+.+||+.||.+|||++|+++
T Consensus       202 ---~~~~~Di~slG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~  278 (285)
T 3is5_A          202 ---VTFKCDIWSAGVVMYFLLTGCLPFTGTSLEEVQQKATYKEPNYAVECRPLTPQAVDLLKQMLTKDPERRPSAAQVLH  278 (285)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCC--CCCCHHHHHHHHHHTCSCTTTSCCHHHHHT
T ss_pred             ---CCcccCeehHHHHHHHHHhCCCCCCCCCHHHHHhhhccCCcccccccCcCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence               456899999999999999999999764221111     111111222457899999999999999999999999999


Q ss_pred             HHhhhhhcCCccccC
Q psy4039         505 VCQLYLWAPKHWLYG  519 (588)
Q Consensus       505 ~L~~~~~~~h~w~~~  519 (588)
                               |||+++
T Consensus       279 ---------hp~f~~  284 (285)
T 3is5_A          279 ---------HEWFKQ  284 (285)
T ss_dssp             ---------SGGGGC
T ss_pred             ---------CHHhhc
Confidence                     999974

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=100.00  E-value=3.6e-43  Score=353.67  Aligned_cols=254  Identities=21%  Similarity=0.257  Sum_probs=208.1

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEEC-CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCC
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLP  269 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~  269 (588)
                      +++..++|++.+.||+|+||.||+|.+. +..||||++.....                  ....+.+|+.++..+    
T Consensus         3 ~~l~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~------------------~~~~~~~E~~~l~~l----   60 (268)
T 3sxs_A            3 MELKREEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSM------------------SEDEFFQEAQTMMKL----   60 (268)
T ss_dssp             TBCCGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTTB------------------CHHHHHHHHHHHHHC----
T ss_pred             eEechhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCCC------------------cHHHHHHHHHHHHhC----
Confidence            4567799999999999999999999988 56899999953221                  223466799999987    


Q ss_pred             CCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHH
Q psy4039         270 PHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQ  348 (588)
Q Consensus       270 ~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~q  348 (588)
                      +||||+++++++.+..                            ..++||||+ +++|.+++...+..+++.+++.++.|
T Consensus        61 ~h~~i~~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~q  112 (268)
T 3sxs_A           61 SHPKLVKFYGVCSKEY----------------------------PIYIVTEYISNGCLLNYLRSHGKGLEPSQLLEMCYD  112 (268)
T ss_dssp             CCTTBCCEEEEECSSS----------------------------SEEEEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHH
T ss_pred             CCCCEeeEEEEEccCC----------------------------ceEEEEEccCCCcHHHHHHHcCCCCCHHHHHHHHHH
Confidence            8999999999987632                            389999999 68999999887657999999999999


Q ss_pred             HHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCC
Q psy4039         349 LLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGL  428 (588)
Q Consensus       349 l~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~  428 (588)
                      ++.||.|||++||+||||||+|||++.+     +.+||+|||+++.........    .....||+.|+|||++.+..  
T Consensus       113 i~~~l~~lH~~~i~H~dikp~Nil~~~~-----~~~~l~Dfg~~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~--  181 (268)
T 3sxs_A          113 VCEGMAFLESHQFIHRDLAARNCLVDRD-----LCVKVSDFGMTRYVLDDQYVS----SVGTKFPVKWSAPEVFHYFK--  181 (268)
T ss_dssp             HHHHHHHHHHTTEEESSCSGGGEEECTT-----CCEEECCTTCEEECCTTCEEE----CCSCCCCGGGCCHHHHHHSE--
T ss_pred             HHHHHHHHHHCCeecCCcCcceEEECCC-----CCEEEccCccceecchhhhhc----ccCCCcCcccCCHHHHhccC--
Confidence            9999999999999999999999999987     899999999998765432211    12345788899999998765  


Q ss_pred             ccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHH
Q psy4039         429 FSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAAT  504 (588)
Q Consensus       429 ~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~  504 (588)
                          ++.++||||||+++|||++ |..||........   .........+..+++++.+++.+||+.||.+|||++++++
T Consensus       182 ----~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~  257 (268)
T 3sxs_A          182 ----YSSKSDVWAFGILMWEVFSLGKMPYDLYTNSEVVLKVSQGHRLYRPHLASDTIYQIMYSCWHELPEKRPTFQQLLS  257 (268)
T ss_dssp             ----EETTHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCCCCCTTSCHHHHHHHHHTTCSSGGGSCCHHHHHH
T ss_pred             ----CchhhhhHHHHHHHHHHHcCCCCCccccChHHHHHHHHcCCCCCCCCcChHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence                4478999999999999999 9999976422211   1122233445678999999999999999999999999999


Q ss_pred             HHhhh
Q psy4039         505 VCQLY  509 (588)
Q Consensus       505 ~L~~~  509 (588)
                      .|+.+
T Consensus       258 ~L~~l  262 (268)
T 3sxs_A          258 SIEPL  262 (268)
T ss_dssp             HHGGG
T ss_pred             HHHHh
Confidence            87754

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=100.00  E-value=5.8e-43  Score=357.05  Aligned_cols=263  Identities=17%  Similarity=0.202  Sum_probs=209.2

Q ss_pred             ccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCC
Q psy4039         192 DVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLP  269 (588)
Q Consensus       192 ~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~  269 (588)
                      .+..++|++.+.||+|+||.||+|.+.  ++.||||++....                   ....+.+|+.+++.+   .
T Consensus         6 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-------------------~~~~~~~e~~~~~~l---~   63 (298)
T 1csn_A            6 NVVGVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS-------------------DAPQLRDEYRTYKLL---A   63 (298)
T ss_dssp             CEETTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT-------------------TSCCHHHHHHHHHHT---T
T ss_pred             cccccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCC-------------------ccHHHHHHHHHHHHH---h
Confidence            344488999999999999999999975  8999999985321                   234466788888887   5


Q ss_pred             CCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4039         270 PHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQL  349 (588)
Q Consensus       270 ~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql  349 (588)
                      .|+||+++++++.+..                            ..++||||++++|.+++...+..+++.++..++.||
T Consensus        64 ~~~~i~~~~~~~~~~~----------------------------~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~i~~qi  115 (298)
T 1csn_A           64 GCTGIPNVYYFGQEGL----------------------------HNVLVIDLLGPSLEDLLDLCGRKFSVKTVAMAAKQM  115 (298)
T ss_dssp             TCTTCCCEEEEEEETT----------------------------EEEEEEECCCCBHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred             cCCCCCeEEeecCCCc----------------------------eeEEEEEecCCCHHHHHHHhccCCCHHHHHHHHHHH
Confidence            7999999999887632                            489999999999999999776579999999999999


Q ss_pred             HHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCcccc--ccccccccCCccccchhHHhcCCC
Q psy4039         350 LEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQY--SSADIELGGNVALMAPEVALATPG  427 (588)
Q Consensus       350 ~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~--~~~~~~~~GT~~Y~APE~l~~~~~  427 (588)
                      +.||.|||++||+||||||+|||++.+.......+||+|||+++..........  ........||+.|+|||++.+.. 
T Consensus       116 ~~~l~~lH~~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-  194 (298)
T 1csn_A          116 LARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGRE-  194 (298)
T ss_dssp             HHHHHHHHTTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCC-
T ss_pred             HHHHHHHHhCCEecCCCCHHHEEeccCCCCCCCeEEEEECccccccccccccccccccCccCCCCCcccCCchhhcCCC-
Confidence            999999999999999999999999876322224599999999987655322110  01223567999999999997665 


Q ss_pred             CccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccc---c-------cccccCCCCCCccHHHHHHHHHhhhhCCCCCC
Q psy4039         428 LFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD---Y-------EVNALPQLNTNVPEVMRRLVAKLLENDPSDRP  497 (588)
Q Consensus       428 ~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~---~-------~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rp  497 (588)
                           ++.++|||||||++|||++|+.||.+......   +       .....+.....+|+++.+++.+||+.||++||
T Consensus       195 -----~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~RP  269 (298)
T 1csn_A          195 -----QSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPLRELCAGFPEEFYKYMHYARNLAFDATP  269 (298)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHHCCTTCCC
T ss_pred             -----CChHHHHHHHHHHHHHHHcCCCCcchhhccccHHHHHHHHhhccCccHHHHHhhCcHHHHHHHHHHhcCCcccCC
Confidence                 45789999999999999999999976321110   0       00111223457899999999999999999999


Q ss_pred             CHHHHHHHHhhhh
Q psy4039         498 SAELAATVCQLYL  510 (588)
Q Consensus       498 s~~e~l~~L~~~~  510 (588)
                      |++++++.|+..+
T Consensus       270 ~~~~l~~~l~~~~  282 (298)
T 1csn_A          270 DYDYLQGLFSKVL  282 (298)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            9999999888664

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=100.00  E-value=3.5e-43  Score=356.46  Aligned_cols=254  Identities=20%  Similarity=0.336  Sum_probs=205.4

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||.||+|.+.  +..||||++........               ..+.+.+|+.+++.+    +|||
T Consensus         6 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~---------------~~~~~~~e~~~l~~l----~h~~   66 (284)
T 3kk8_A            6 DNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSAR---------------DFQKLEREARICRKL----QHPN   66 (284)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHH---------------HHHHHHHHHHHHHHC----CCTT
T ss_pred             hhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHH---------------HHHHHHHHHHHHHHc----CCCC
Confidence            88999999999999999999987  78999999964322110               123456799999987    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++++.+..                            ..++||||+ +++|.+++.... .+++..+..++.|++.|
T Consensus        67 i~~~~~~~~~~~----------------------------~~~~v~e~~~~~~l~~~~~~~~-~~~~~~~~~~~~~i~~~  117 (284)
T 3kk8_A           67 IVRLHDSIQEES----------------------------FHYLVFDLVTGGELFEDIVARE-FYSEADASHCIQQILES  117 (284)
T ss_dssp             BCCEEEEEECSS----------------------------EEEEEECCCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHH
T ss_pred             cCeEEEEEEcCC----------------------------EEEEEEecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHH
Confidence            999999987632                            489999999 579999988764 79999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||++||+||||||+|||++.+..  .+.+||+|||++.........      ....||+.|+|||++.+..      
T Consensus       118 l~~lH~~~i~H~dikp~Nil~~~~~~--~~~~kl~Dfg~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~------  183 (284)
T 3kk8_A          118 IAYCHSNGIVHRNLKPENLLLASKAK--GAAVKLADFGLAIEVNDSEAW------HGFAGTPGYLSPEVLKKDP------  183 (284)
T ss_dssp             HHHHHHTTEECSCCCGGGEEESSSST--TCCEEECCCTTCEECCSSCBC------CCSCSCGGGCCHHHHTTCC------
T ss_pred             HHHHHHCCcCcCCCCHHHEEEecCCC--CCcEEEeeceeeEEcccCccc------cCCCCCcCCcCchhhcCCC------
Confidence            99999999999999999999986622  146999999999776543221      1456999999999997664      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCccccccccccc------cccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHH
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV------NALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVC  506 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~------~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L  506 (588)
                      ++.++||||||+++|+|++|+.||.+.........      ....+....+++++.+++.+||+.||++|||++++++  
T Consensus       184 ~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~--  261 (284)
T 3kk8_A          184 YSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDYPSPEWDTVTPEAKSLIDSMLTVNPKKRITADQALK--  261 (284)
T ss_dssp             BCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHTT--
T ss_pred             CCcccchHHHHHHHHHHHHCCCCCCCCchhHHHHHHHhccccCCchhhcccCHHHHHHHHHHcccChhhCCCHHHHhc--
Confidence            45789999999999999999999976432211111      1112233578999999999999999999999999998  


Q ss_pred             hhhhhcCCccccCC
Q psy4039         507 QLYLWAPKHWLYGA  520 (588)
Q Consensus       507 ~~~~~~~h~w~~~~  520 (588)
                             |||++..
T Consensus       262 -------h~~~~~~  268 (284)
T 3kk8_A          262 -------VPWICNR  268 (284)
T ss_dssp             -------SHHHHSC
T ss_pred             -------CccccCC
Confidence                   9999744

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=100.00  E-value=1.4e-43  Score=368.44  Aligned_cols=263  Identities=19%  Similarity=0.208  Sum_probs=206.6

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEEC--Ce----eEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhh
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATFR--GV----EYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNS  264 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~----~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~  264 (588)
                      ..+..++|++.+.||+|+||+||+|.+.  +.    .||+|.+....                .....+.+.+|+.+++.
T Consensus        10 ~~l~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~----------------~~~~~~~~~~E~~~l~~   73 (327)
T 3poz_A           10 RILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT----------------SPKANKEILDEAYVMAS   73 (327)
T ss_dssp             EECCGGGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-----------------------CHHHHHHHHHHHHH
T ss_pred             hhcCHHHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeeccccc----------------CHHHHHHHHHHHHHHHh
Confidence            3455588999999999999999999985  33    46888774211                01133456789999999


Q ss_pred             hcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHH
Q psy4039         265 VENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERV  343 (588)
Q Consensus       265 l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~  343 (588)
                      +    +||||++++++|.+.                             ..+++||++ +|+|.+++......+++..++
T Consensus        74 l----~h~~iv~~~~~~~~~-----------------------------~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~  120 (327)
T 3poz_A           74 V----DNPHVCRLLGICLTS-----------------------------TVQLITQLMPFGCLLDYVREHKDNIGSQYLL  120 (327)
T ss_dssp             C----CBTTBCCEEEEEESS-----------------------------SEEEEEECCTTCBHHHHHHHSTTSCCHHHHH
T ss_pred             C----CCCCEeEEEEEEecC-----------------------------CeEEEEEecCCCcHHHHHHhcCCCCCHHHHH
Confidence            8    899999999998763                             277889998 689999999876689999999


Q ss_pred             HHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHh
Q psy4039         344 LLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVAL  423 (588)
Q Consensus       344 ~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~  423 (588)
                      .++.||+.||.|||++||+||||||+|||++.+     +.+||+|||+|+.........   ......||+.|+|||++.
T Consensus       121 ~~~~qi~~~l~~LH~~~ivH~Dikp~NIll~~~-----~~~kl~Dfg~a~~~~~~~~~~---~~~~~~~t~~y~aPE~~~  192 (327)
T 3poz_A          121 NWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTP-----QHVKITDFGLAKLLGAEEKEY---HAEGGKVPIKWMALESIL  192 (327)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEET-----TEEEECCTTHHHHHTTTCC----------CCCGGGSCHHHHH
T ss_pred             HHHHHHHHHHHHHhhCCeeCCCCChheEEECCC-----CCEEEccCcceeEccCCcccc---cccCCCccccccChHHhc
Confidence            999999999999999999999999999999988     899999999998765432211   112345788999999998


Q ss_pred             cCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCH
Q psy4039         424 ATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSA  499 (588)
Q Consensus       424 ~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~  499 (588)
                      +..      ++.++|||||||++|||++ |+.||.+......   .........+..++.++.+++.+||+.||.+|||+
T Consensus       193 ~~~------~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~  266 (327)
T 3poz_A          193 HRI------YTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPICTIDVYMIMVKCWMIDADSRPKF  266 (327)
T ss_dssp             HCC------CCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCCCCCCTTBCHHHHHHHHHHTCSCGGGSCCH
T ss_pred             cCC------CCchhhhhhhHHHHHHHHhcCCCCccCCCHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHcCCChhhCCCH
Confidence            765      4578999999999999999 9999976432221   11223345567789999999999999999999999


Q ss_pred             HHHHHHHhhhhhcCCcc
Q psy4039         500 ELAATVCQLYLWAPKHW  516 (588)
Q Consensus       500 ~e~l~~L~~~~~~~h~w  516 (588)
                      .++++.|+.....+..|
T Consensus       267 ~ell~~l~~~~~~~~~~  283 (327)
T 3poz_A          267 RELIIEFSKMARDPQRY  283 (327)
T ss_dssp             HHHHHHHHHHHTSHHHH
T ss_pred             HHHHHHHHHHHhhhhhh
Confidence            99999888766544333

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=100.00  E-value=1.1e-43  Score=372.78  Aligned_cols=263  Identities=21%  Similarity=0.239  Sum_probs=210.3

Q ss_pred             CccccccCCeEEeeeecccCceeEEEEEEC-------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHH
Q psy4039         189 DVDDVKVDDIQIGKFIAKGTNAVVYEATFR-------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDML  261 (588)
Q Consensus       189 ~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~i  261 (588)
                      ..|++..++|++++.||+|+||.||+|.+.       ++.||||++......                ...+.+.+|+.+
T Consensus        15 ~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~----------------~~~~~~~~E~~~   78 (359)
T 3vhe_A           15 SKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATH----------------SEHRALMSELKI   78 (359)
T ss_dssp             HHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCH----------------HHHHHHHHHHHH
T ss_pred             ccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCH----------------HHHHHHHHHHHH
Confidence            346677799999999999999999999853       578999999532110                012346779999


Q ss_pred             HhhhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcC-----
Q psy4039         262 MNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCA-----  335 (588)
Q Consensus       262 l~~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~-----  335 (588)
                      +..+   .+|||||++++++.+..                           ..+++||||+ +|+|.+++.....     
T Consensus        79 l~~l---~~hpniv~~~~~~~~~~---------------------------~~~~iv~e~~~~g~L~~~l~~~~~~~~~~  128 (359)
T 3vhe_A           79 LIHI---GHHLNVVNLLGACTKPG---------------------------GPLMVIVEFCKFGNLSTYLRSKRNEFVPY  128 (359)
T ss_dssp             HHHH---CCCTTBCCEEEEECSTT---------------------------SCCEEEEECCTTEEHHHHHHTTTTSBCSC
T ss_pred             HHhh---cCCcceeeeeeeeecCC---------------------------CceEEEEEecCCCcHHHHHHhcccccccc
Confidence            9988   57999999999987631                           1379999999 5799999986531     


Q ss_pred             ------------------------------------------------------------CCCHHHHHHHHHHHHHHHHH
Q psy4039         336 ------------------------------------------------------------QLSMHERVLLFTQLLEGVTH  355 (588)
Q Consensus       336 ------------------------------------------------------------~l~~~~~~~i~~ql~~gL~y  355 (588)
                                                                                  .+++..++.++.||+.||.|
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~  208 (359)
T 3vhe_A          129 KTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEF  208 (359)
T ss_dssp             C------------------------------------------------------CTTTTCBCHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhhcccccccccchhhhccccccCccccccccccccccccchhhhcccccchhccccCHHHHHHHHHHHHHHHHH
Confidence                                                                        18999999999999999999


Q ss_pred             HHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCC
Q psy4039         356 LNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS  435 (588)
Q Consensus       356 LH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~  435 (588)
                      ||++||+||||||+|||++.+     +.+||+|||+++........   .......||+.|+|||++.+..      ++.
T Consensus       209 LH~~~ivH~Dikp~NIll~~~-----~~~kl~Dfg~a~~~~~~~~~---~~~~~~~~t~~y~aPE~~~~~~------~~~  274 (359)
T 3vhe_A          209 LASRKCIHRDLAARNILLSEK-----NVVKICDFGLARDIYKDPDY---VRKGDARLPLKWMAPETIFDRV------YTI  274 (359)
T ss_dssp             HHHTTCCCSCCSGGGEEECGG-----GCEEECCCGGGSCTTSCTTC---EEC--CEECGGGCCHHHHHHCC------CCH
T ss_pred             HHHCCcccCCCChhhEEEcCC-----CcEEEEeccceeeecccccc---hhccccCCCceeEChhhhcCCC------CCc
Confidence            999999999999999999987     79999999999865442221   1112456899999999998765      457


Q ss_pred             cCchhhHHHHHHHHhc-CCCCCcccccccc----ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhh
Q psy4039         436 KSDAWTAGTVAYEIFG-HDNPFYQSARNTD----YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYL  510 (588)
Q Consensus       436 ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~----~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~  510 (588)
                      ++|||||||++|||++ |..||.+......    .........+..+++++.+++.+||+.||.+|||++++++.|+..+
T Consensus       275 ~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~  354 (359)
T 3vhe_A          275 QSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLL  354 (359)
T ss_dssp             HHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHhcCCCCCCccchhHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHH
Confidence            8999999999999998 9999976432221    1223344566789999999999999999999999999999888665


Q ss_pred             h
Q psy4039         511 W  511 (588)
Q Consensus       511 ~  511 (588)
                      .
T Consensus       355 ~  355 (359)
T 3vhe_A          355 Q  355 (359)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=100.00  E-value=1.8e-43  Score=358.95  Aligned_cols=258  Identities=24%  Similarity=0.313  Sum_probs=197.8

Q ss_pred             CccccccCCeEEeeeecccCceeEEEEEEC-----CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHh
Q psy4039         189 DVDDVKVDDIQIGKFIAKGTNAVVYEATFR-----GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMN  263 (588)
Q Consensus       189 ~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-----g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~  263 (588)
                      ..+++..++|++.+.||+|+||.||+|.+.     +..||||.+....   . .            ...+.+.+|+.+++
T Consensus         8 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~---~-~------------~~~~~~~~e~~~l~   71 (281)
T 1mp8_A            8 RDYEIQRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCT---S-D------------SVREKFLQEALTMR   71 (281)
T ss_dssp             -CCBCCGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTT---S-H------------HHHHHHHHHHHHHH
T ss_pred             cceEEehHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccC---C-H------------HHHHHHHHHHHHHH
Confidence            345677799999999999999999999985     4579999984321   1 0            02234667899998


Q ss_pred             hhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCC-CcHHHHHHHhcCCCCHHHH
Q psy4039         264 SVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYN-TDLRNYLRERCAQLSMHER  342 (588)
Q Consensus       264 ~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~-gsL~~~L~~~~~~l~~~~~  342 (588)
                      .+    +||||+++++++.+.                             ..++||||+. ++|.+++......+++..+
T Consensus        72 ~l----~h~~iv~~~~~~~~~-----------------------------~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~  118 (281)
T 1mp8_A           72 QF----DHPHIVKLIGVITEN-----------------------------PVWIIMELCTLGELRSFLQVRKYSLDLASL  118 (281)
T ss_dssp             TC----CCTTBCCEEEEECSS-----------------------------SCEEEEECCTTEEHHHHHHHTTTTSCHHHH
T ss_pred             hC----CCCccceEEEEEccC-----------------------------ccEEEEecCCCCCHHHHHHhcCCCCCHHHH
Confidence            87    899999999997542                             2789999994 7999999877657999999


Q ss_pred             HHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHH
Q psy4039         343 VLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVA  422 (588)
Q Consensus       343 ~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l  422 (588)
                      +.++.|++.||.|||++||+||||||+|||++.+     +.+||+|||+++.........    .....||+.|+|||++
T Consensus       119 ~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~-----~~~kl~Dfg~~~~~~~~~~~~----~~~~~~~~~y~aPE~~  189 (281)
T 1mp8_A          119 ILYAYQLSTALAYLESKRFVHRDIAARNVLVSSN-----DCVKLGDFGLSRYMEDSTYYK----ASKGKLPIKWMAPESI  189 (281)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEET-----TEEEECC-----------------------CCGGGCCHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCeecccccHHHEEECCC-----CCEEECccccccccCcccccc----cccCCCcccccChhhc
Confidence            9999999999999999999999999999999987     799999999998765422111    1134578899999999


Q ss_pred             hcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCccccccccc---cccccCCCCCCccHHHHHHHHHhhhhCCCCCCC
Q psy4039         423 LATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTDY---EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS  498 (588)
Q Consensus       423 ~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~~---~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps  498 (588)
                      .+..      ++.++|||||||++|||++ |..||.+.......   ........+..+|+++.+++.+||+.||++|||
T Consensus       190 ~~~~------~~~~~Di~slG~~l~ell~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps  263 (281)
T 1mp8_A          190 NFRR------FTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPR  263 (281)
T ss_dssp             HHCC------CSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCC
T ss_pred             ccCC------CCCccCchHHHHHHHHHHhcCCCCCCcCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHccCChhhCcC
Confidence            8765      4467999999999999996 99999764332221   122334567789999999999999999999999


Q ss_pred             HHHHHHHHhhhh
Q psy4039         499 AELAATVCQLYL  510 (588)
Q Consensus       499 ~~e~l~~L~~~~  510 (588)
                      ++++++.|+..+
T Consensus       264 ~~~l~~~l~~~~  275 (281)
T 1mp8_A          264 FTELKAQLSTIL  275 (281)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999887543

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=100.00  E-value=2.1e-43  Score=358.65  Aligned_cols=254  Identities=23%  Similarity=0.360  Sum_probs=208.1

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCC
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENL  268 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l  268 (588)
                      ..+..++|++.+.||+|+||.||+|.+.  +..||||++....           ...   ......+.+|+.+++.+   
T Consensus         9 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~-----------~~~---~~~~~~~~~e~~~l~~l---   71 (284)
T 2vgo_A            9 RKFTIDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQ-----------LEK---EGVEHQLRREIEIQSHL---   71 (284)
T ss_dssp             -CCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHH-----------HHH---TTCHHHHHHHHHHHHTC---
T ss_pred             cchhhhhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccc-----------cch---HHHHHHHHHHHHHHhcC---
Confidence            4566799999999999999999999997  7899999985311           000   11234567899999887   


Q ss_pred             CCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHH
Q psy4039         269 PPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFT  347 (588)
Q Consensus       269 ~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~  347 (588)
                       +||||+++++++.+..                            ..++||||+ +++|.+++.... .+++..+..++.
T Consensus        72 -~h~~i~~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~  121 (284)
T 2vgo_A           72 -RHPNILRMYNYFHDRK----------------------------RIYLMLEFAPRGELYKELQKHG-RFDEQRSATFME  121 (284)
T ss_dssp             -CCTTBCCEEEEEECSS----------------------------EEEEEECCCTTEEHHHHHHHHS-SCCHHHHHHHHH
T ss_pred             -CCCCEeeEEEEEEcCC----------------------------EEEEEEEeCCCCcHHHHHHhcC-CCCHHHHHHHHH
Confidence             8999999999987632                            489999999 579999998765 799999999999


Q ss_pred             HHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCC
Q psy4039         348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG  427 (588)
Q Consensus       348 ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~  427 (588)
                      |+++||.|||++||+||||||+||+++.+     +.+||+|||++.......       .....||+.|+|||++.+.. 
T Consensus       122 qi~~~l~~lH~~~i~H~dl~p~Nil~~~~-----~~~kl~Dfg~~~~~~~~~-------~~~~~~~~~y~aPE~~~~~~-  188 (284)
T 2vgo_A          122 ELADALHYCHERKVIHRDIKPENLLMGYK-----GELKIADFGWSVHAPSLR-------RRTMCGTLDYLPPEMIEGKT-  188 (284)
T ss_dssp             HHHHHHHHHHTTTEECCCCSGGGEEECTT-----CCEEECCCTTCEECSSSC-------BCCCCSCGGGCCHHHHTTCC-
T ss_pred             HHHHHHHHHHHCCceecCCCHHHEEEcCC-----CCEEEecccccccCcccc-------cccccCCCCcCCHHHhccCC-
Confidence            99999999999999999999999999987     789999999987654321       11456999999999997654 


Q ss_pred             CccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccccc--ccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHH
Q psy4039         428 LFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATV  505 (588)
Q Consensus       428 ~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~--~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~  505 (588)
                           ++.++||||||+++|||++|..||..........  ......++..++++++++|.+||+.||.+|||++++++ 
T Consensus       189 -----~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~-  262 (284)
T 2vgo_A          189 -----HDEKVDLWCAGVLCYEFLVGMPPFDSPSHTETHRRIVNVDLKFPPFLSDGSKDLISKLLRYHPPQRLPLKGVME-  262 (284)
T ss_dssp             -----BCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTTCCCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT-
T ss_pred             -----CCcccchhhHHHHHHHHHHCCCCCCCCCHhHHHHHHhccccCCCCcCCHHHHHHHHHHhhcCHhhCCCHHHHhh-
Confidence                 4578999999999999999999997642221111  11223456778999999999999999999999999999 


Q ss_pred             HhhhhhcCCcccc
Q psy4039         506 CQLYLWAPKHWLY  518 (588)
Q Consensus       506 L~~~~~~~h~w~~  518 (588)
                              |||++
T Consensus       263 --------h~~~~  267 (284)
T 2vgo_A          263 --------HPWVK  267 (284)
T ss_dssp             --------CHHHH
T ss_pred             --------CHHHH
Confidence                    99997

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=100.00  E-value=2.6e-43  Score=371.89  Aligned_cols=275  Identities=14%  Similarity=0.182  Sum_probs=205.2

Q ss_pred             cccCCeEEeeeecccCceeEEEEEEC-------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhh
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFR-------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSV  265 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~-------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l  265 (588)
                      +..++|++.+.||+|+||.||+|.+.       ++.||||++.....     ...++ .+-...........|+..+..+
T Consensus        32 ~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~-----~~~~e-~~~~~~~~~~~~~~e~~~~~~l  105 (364)
T 3op5_A           32 MAAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNG-----PLFTE-LKFYQRAAKPEQIQKWIRTRKL  105 (364)
T ss_dssp             TTCCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCH-----HHHHH-HHHHHHHCCHHHHHHHHHHTTC
T ss_pred             cCCCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccch-----hHHHH-HHHHHhhhhhHHHHHHHHHhhc
Confidence            34468999999999999999999986       47899999864321     11010 0001111233344566666665


Q ss_pred             cCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHH
Q psy4039         266 ENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLL  345 (588)
Q Consensus       266 ~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i  345 (588)
                          +||||+++++++.+..                        ......|+||||++++|.+++......+++.+++.+
T Consensus       106 ----~h~~iv~~~~~~~~~~------------------------~~~~~~~lv~e~~g~~L~~~~~~~~~~l~~~~~~~i  157 (364)
T 3op5_A          106 ----KYLGVPKYWGSGLHDK------------------------NGKSYRFMIMDRFGSDLQKIYEANAKRFSRKTVLQL  157 (364)
T ss_dssp             ----SCCCSCCEEEEEEEEE------------------------TTEEEEEEEEECEEEEHHHHHHHTTSCCCHHHHHHH
T ss_pred             ----cCCCCCeEEeeeeecc------------------------CCcceEEEEEeCCCCCHHHHHHhccCCCCHHHHHHH
Confidence                8999999999988632                        122358999999988999999887568999999999


Q ss_pred             HHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccc--cccccccccCCccccchhHHh
Q psy4039         346 FTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQ--YSSADIELGGNVALMAPEVAL  423 (588)
Q Consensus       346 ~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~--~~~~~~~~~GT~~Y~APE~l~  423 (588)
                      +.||+.||.|||++||+||||||+|||++.+..   +.+||+|||+|+.........  .........||+.|+|||++.
T Consensus       158 ~~qi~~~l~~lH~~~iiHrDlkp~Nill~~~~~---~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~  234 (364)
T 3op5_A          158 SLRILDILEYIHEHEYVHGDIKASNLLLNYKNP---DQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHN  234 (364)
T ss_dssp             HHHHHHHHHHHHHTTEECCCCCGGGEEEESSCT---TCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHT
T ss_pred             HHHHHHHHHHHHHCCeEEecCCHHHEEEecCCC---CeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhC
Confidence            999999999999999999999999999983211   789999999998765422111  111123456999999999997


Q ss_pred             cCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccccc-------cccC------CCCCCccHHHHHHHHHhhh
Q psy4039         424 ATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV-------NALP------QLNTNVPEVMRRLVAKLLE  490 (588)
Q Consensus       424 ~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~-------~~~~------~~~~~~~~~l~~Li~~~L~  490 (588)
                      +..      ++.++|||||||++|||++|+.||.+.........       ...+      -....+|+++.+++..||+
T Consensus       235 ~~~------~~~~~Di~slG~~l~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~  308 (364)
T 3op5_A          235 GVA------PSRRGDLEILGYCMIQWLTGHLPWEDNLKDPKYVRDSKIRYRENIASLMDKCFPAANAPGEIAKYMETVKL  308 (364)
T ss_dssp             TCC------CCHHHHHHHHHHHHHHHHHSCCTTGGGTTCHHHHHHHHHHHHHCHHHHHHHHSCTTCCCHHHHHHHHHHHT
T ss_pred             CCC------CCchhhHHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHhhhhHHHHHHHhcccccCHHHHHHHHHHHhc
Confidence            765      45789999999999999999999986322211100       0000      0125679999999999999


Q ss_pred             hCCCCCCCHHHHHHHHhhhh
Q psy4039         491 NDPSDRPSAELAATVCQLYL  510 (588)
Q Consensus       491 ~dP~~Rps~~e~l~~L~~~~  510 (588)
                      .||.+||+++++++.|+..+
T Consensus       309 ~~p~~RP~~~~l~~~l~~~~  328 (364)
T 3op5_A          309 LDYTEKPLYENLRDILLQGL  328 (364)
T ss_dssp             CCTTCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHH
Confidence            99999999999999888665

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=100.00  E-value=4.1e-43  Score=363.58  Aligned_cols=259  Identities=22%  Similarity=0.391  Sum_probs=207.2

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||.||+|.+.  ++.||||++.........           .....+.+.+|+.+++.+    +|||
T Consensus        12 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~-----------~~~~~~~~~~E~~~l~~l----~h~~   76 (321)
T 2a2a_A           12 DFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASR-----------RGVSREEIEREVSILRQV----LHHN   76 (321)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCS-----------SSBCHHHHHHHHHHHHHC----CCTT
T ss_pred             ccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccc-----------cchhHHHHHHHHHHHHhC----CCCC
Confidence            78999999999999999999997  889999999653322110           011234567899999997    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++++.+..                            ..++||||+ +++|.+++.... .+++..++.++.|++.|
T Consensus        77 iv~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~a  127 (321)
T 2a2a_A           77 VITLHDVYENRT----------------------------DVVLILELVSGGELFDFLAQKE-SLSEEEATSFIKQILDG  127 (321)
T ss_dssp             BCCEEEEEECSS----------------------------EEEEEECCCCSCBHHHHHHTCS-CEEHHHHHHHHHHHHHH
T ss_pred             cceEEEEEecCC----------------------------EEEEEEEcCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHH
Confidence            999999987632                            499999999 689999997654 79999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||++||+||||||+|||++.+.... ..+||+|||+++........      ....||+.|+|||++.+..      
T Consensus       128 L~~lH~~~ivH~dikp~NIl~~~~~~~~-~~~kl~Dfg~~~~~~~~~~~------~~~~gt~~y~aPE~~~~~~------  194 (321)
T 2a2a_A          128 VNYLHTKKIAHFDLKPENIMLLDKNIPI-PHIKLIDFGLAHEIEDGVEF------KNIFGTPEFVAPEIVNYEP------  194 (321)
T ss_dssp             HHHHHHTTEECCCCSGGGEEESCTTSSS-CCEEECCCTTCEECCTTCCC------CCCCSCGGGCCHHHHTTCC------
T ss_pred             HHHHHhCCeecCCCChHHEEEecCCCCc-CCEEEccCccceecCccccc------cccCCCCCccCcccccCCC------
Confidence            9999999999999999999998772211 27999999999876543221      2456999999999997654      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCccccccccccc------cccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHH
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV------NALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVC  506 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~------~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L  506 (588)
                      ++.++|||||||++|||++|..||.+.........      ...+..+..+++.++++|.+||+.||++|||++++++  
T Consensus       195 ~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~--  272 (321)
T 2a2a_A          195 LGLEADMWSIGVITYILLSGASPFLGDTKQETLANITSVSYDFDEEFFSHTSELAKDFIRKLLVKETRKRLTIQEALR--  272 (321)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHTTCCCCCHHHHTTCCHHHHHHHHTTSCSSTTTSCCHHHHHH--
T ss_pred             CCCccccHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcccccChhhhcccCHHHHHHHHHHcCCChhhCcCHHHHhc--
Confidence            45789999999999999999999976432221111      0111122567899999999999999999999999999  


Q ss_pred             hhhhhcCCccccCC
Q psy4039         507 QLYLWAPKHWLYGA  520 (588)
Q Consensus       507 ~~~~~~~h~w~~~~  520 (588)
                             |||+...
T Consensus       273 -------hp~~~~~  279 (321)
T 2a2a_A          273 -------HPWITPV  279 (321)
T ss_dssp             -------STTTSCS
T ss_pred             -------CccccCC
Confidence                   9999643

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=100.00  E-value=2.4e-43  Score=364.97  Aligned_cols=274  Identities=21%  Similarity=0.208  Sum_probs=197.1

Q ss_pred             ccccccCCeEEeeeecccCceeEEEEEECC-----eeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhh
Q psy4039         190 VDDVKVDDIQIGKFIAKGTNAVVYEATFRG-----VEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNS  264 (588)
Q Consensus       190 ~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~g-----~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~  264 (588)
                      ...+..++|++.+.||+|+||.||+|.+..     ..||||++.......               ...+.+.+|+.+++.
T Consensus        17 ~~~i~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~---------------~~~~~~~~E~~~l~~   81 (323)
T 3qup_A           17 DVLIPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIAS---------------SDIEEFLREAACMKE   81 (323)
T ss_dssp             TTBCC---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------C---------------HHHHHHHHHHHHHTT
T ss_pred             hcccChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCH---------------HHHHHHHHHHHHHHH
Confidence            344556889999999999999999999872     279999985321111               122446679999988


Q ss_pred             hcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc-----CCCC
Q psy4039         265 VENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC-----AQLS  338 (588)
Q Consensus       265 l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~-----~~l~  338 (588)
                      +    +||||+++++++.+...                      .+.....++||||+ +|+|.+++....     ..++
T Consensus        82 l----~h~~iv~~~~~~~~~~~----------------------~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~  135 (323)
T 3qup_A           82 F----DHPHVAKLVGVSLRSRA----------------------KGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLP  135 (323)
T ss_dssp             C----CCTTBCCCCEEEECC-----------------------------CEEEEEECCTTCBHHHHHHHHHC---CCCCC
T ss_pred             C----CCCceehhhceeecccc----------------------ccCCCccEEEEEeccCCcHHHHHHhhhccccccccC
Confidence            7    99999999999886421                      11122369999999 579999997542     2599


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccc
Q psy4039         339 MHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMA  418 (588)
Q Consensus       339 ~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~A  418 (588)
                      +.+++.++.|++.||.|||++||+||||||+|||++.+     +.+||+|||+++.........   ......||+.|+|
T Consensus       136 ~~~~~~i~~qi~~al~~LH~~~ivH~Dikp~NIli~~~-----~~~kl~Dfg~a~~~~~~~~~~---~~~~~~~~~~y~a  207 (323)
T 3qup_A          136 LQTLVRFMVDIACGMEYLSSRNFIHRDLAARNCMLAED-----MTVCVADFGLSRKIYSGDYYR---QGCASKLPVKWLA  207 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTT-----SCEEECCCCC--------------------CCGGGCC
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCcccCCCCcceEEEcCC-----CCEEEeecccccccccccccc---ccccccCcccccC
Confidence            99999999999999999999999999999999999987     899999999998764432211   1123457889999


Q ss_pred             hhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCccccccccc---cccccCCCCCCccHHHHHHHHHhhhhCCC
Q psy4039         419 PEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTDY---EVNALPQLNTNVPEVMRRLVAKLLENDPS  494 (588)
Q Consensus       419 PE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~~---~~~~~~~~~~~~~~~l~~Li~~~L~~dP~  494 (588)
                      ||++.+..      ++.++|||||||++|||++ |..||.+.......   ........+..+++++.+++.+||+.||.
T Consensus       208 PE~~~~~~------~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~  281 (323)
T 3qup_A          208 LESLADNL------YTVHSDVWAFGVTMWEIMTRGQTPYAGIENAEIYNYLIGGNRLKQPPECMEEVYDLMYQCWSADPK  281 (323)
T ss_dssp             HHHHHHCC------CCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGG
T ss_pred             chhhcCCC------CCCccchhhHHHHHHHHHhCCCCCccccChHHHHHHHhcCCCCCCCCccCHHHHHHHHHHccCChh
Confidence            99998765      4578999999999999999 89999764332221   11223455678899999999999999999


Q ss_pred             CCCCHHHHHHHHhhhhhcCCccccCC
Q psy4039         495 DRPSAELAATVCQLYLWAPKHWLYGA  520 (588)
Q Consensus       495 ~Rps~~e~l~~L~~~~~~~h~w~~~~  520 (588)
                      +|||+.++++.|+..+.  |+|+...
T Consensus       282 ~Rps~~~l~~~l~~~l~--~~~~~~~  305 (323)
T 3qup_A          282 QRPSFTCLRMELENILG--HLSVLST  305 (323)
T ss_dssp             GSCCHHHHHHHHHHHHH--C------
T ss_pred             hCcCHHHHHHHHHHHHH--HhhhcCC
Confidence            99999999998887766  8898744

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=100.00  E-value=5.4e-43  Score=380.51  Aligned_cols=253  Identities=21%  Similarity=0.227  Sum_probs=209.9

Q ss_pred             CccccccCCeEEeeeecccCceeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCC
Q psy4039         189 DVDDVKVDDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENL  268 (588)
Q Consensus       189 ~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l  268 (588)
                      ..|++..++|++.+.||+|+||.||+|.+.++.||||+++...                   ..+.+.+|+.+|+.+   
T Consensus       186 ~~~~i~~~~~~~~~~lG~G~fg~V~~~~~~~~~vavK~~~~~~-------------------~~~~~~~E~~~l~~l---  243 (450)
T 1k9a_A          186 SGWALNMKELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIKNDA-------------------TAQAFLAEASVMTQL---  243 (450)
T ss_dssp             TTCBCCGGGEEEEEEEEECSSEEEEEEEETTEEEEEEEESSCT-------------------TSHHHHHHHHHHHTC---
T ss_pred             cccccChHHeEEEeeecCcCCeeEEEEEecCCeEEEEEeCCch-------------------HHHHHHHHHHHHHhc---
Confidence            4577888999999999999999999999999999999995321                   234567899999987   


Q ss_pred             CCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcC-CCCHHHHHHHH
Q psy4039         269 PPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCA-QLSMHERVLLF  346 (588)
Q Consensus       269 ~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~-~l~~~~~~~i~  346 (588)
                       +|||||++++++.+..                           ..+++||||+ +|+|.+++...+. .+++..++.++
T Consensus       244 -~h~niv~~~~~~~~~~---------------------------~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~  295 (450)
T 1k9a_A          244 -RHSNLVQLLGVIVEEK---------------------------GGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFS  295 (450)
T ss_dssp             -CCTTBCCEEEEEECTT---------------------------SCEEEEEECCTTCBHHHHHHHHCTTTCCHHHHHHHH
T ss_pred             -cCCCEEEEEEEEEcCC---------------------------CceEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHH
Confidence             9999999999987532                           1389999999 5799999997643 37999999999


Q ss_pred             HHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCC
Q psy4039         347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP  426 (588)
Q Consensus       347 ~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~  426 (588)
                      .||+.||.|||+++|+||||||+|||++.+     +.+||+|||+++......        ....+|+.|+|||++.+..
T Consensus       296 ~qi~~~l~~LH~~~ivHrDlkp~Nill~~~-----~~~kl~DfG~a~~~~~~~--------~~~~~~~~y~aPE~~~~~~  362 (450)
T 1k9a_A          296 LDVCEAMEYLEGNNFVHRDLAARNVLVSED-----NVAKVSDFGLTKEASSTQ--------DTGKLPVKWTAPEALREKK  362 (450)
T ss_dssp             HHHHHHHHHHHHTTEECSCCCGGGEEECTT-----SCEEECCCTTCEECC--------------CCCTTTSCHHHHHSSC
T ss_pred             HHHHHHHHHHHhCCeeCCCCCHhhEEECCC-----CCEEEeeCCCcccccccc--------cCCCCCcceeCHHHhcCCC
Confidence            999999999999999999999999999987     799999999998543211        1235788999999998665


Q ss_pred             CCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHH
Q psy4039         427 GLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA  502 (588)
Q Consensus       427 ~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~  502 (588)
                            ++.++|||||||++|||++ |+.||.+......   .........+..+|+++.+||.+||+.||.+|||+.++
T Consensus       363 ------~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~dp~~Rpt~~~l  436 (450)
T 1k9a_A          363 ------FSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDGCPPAVYDVMKNCWHLDAATRPTFLQL  436 (450)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHTTTCCSSTTSCTTTHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             ------CCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHH
Confidence                  4578999999999999998 9999976432221   12233455678899999999999999999999999999


Q ss_pred             HHHHhhhh
Q psy4039         503 ATVCQLYL  510 (588)
Q Consensus       503 l~~L~~~~  510 (588)
                      ++.|+.+.
T Consensus       437 ~~~L~~i~  444 (450)
T 1k9a_A          437 REQLEHIR  444 (450)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99887553

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=100.00  E-value=4.9e-43  Score=358.92  Aligned_cols=254  Identities=21%  Similarity=0.285  Sum_probs=198.9

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      .++|++.+.||+|+||.||+|.+.  +..||||++........  .            ..+.+.+|+.+++.+    +||
T Consensus        10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~--~------------~~~~~~~e~~~l~~l----~hp   71 (294)
T 4eqm_A           10 NERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKE--E------------TLKRFEREVHNSSQL----SHQ   71 (294)
T ss_dssp             ETTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCH--H------------HHHHHHHHHHHHTTC----CBT
T ss_pred             hccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccH--H------------HHHHHHHHHHHHhcC----CCC
Confidence            478999999999999999999986  78999999864322211  1            123456788888887    899


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLE  351 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~  351 (588)
                      ||+++++++.+..                            ..|+||||+ +++|.+++...+ .+++..++.++.|++.
T Consensus        72 ~iv~~~~~~~~~~----------------------------~~~lv~e~~~g~~L~~~l~~~~-~~~~~~~~~~~~qi~~  122 (294)
T 4eqm_A           72 NIVSMIDVDEEDD----------------------------CYYLVMEYIEGPTLSEYIESHG-PLSVDTAINFTNQILD  122 (294)
T ss_dssp             TBCCEEEEEECSS----------------------------EEEEEEECCCSCBHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred             CCceEEEeeeeCC----------------------------eEEEEEeCCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence            9999999987632                            489999999 579999998765 7999999999999999


Q ss_pred             HHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccC
Q psy4039         352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF  431 (588)
Q Consensus       352 gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~  431 (588)
                      ||.|||++||+||||||+|||++.+     +.+||+|||+++........    ......||+.|+|||++.+..     
T Consensus       123 ~l~~lH~~~i~H~Dlkp~Nil~~~~-----~~~kl~Dfg~~~~~~~~~~~----~~~~~~gt~~y~aPE~~~~~~-----  188 (294)
T 4eqm_A          123 GIKHAHDMRIVHRDIKPQNILIDSN-----KTLKIFDFGIAKALSETSLT----QTNHVLGTVQYFSPEQAKGEA-----  188 (294)
T ss_dssp             HHHHHHHTTCCCCCCCGGGEEECTT-----SCEEECCCSSSTTC-----------------CCSSCCHHHHHTCC-----
T ss_pred             HHHHHHHCCcccCCCCHHHEEECCC-----CCEEEEeCCCcccccccccc----ccCccccCccccCHhHhcCCC-----
Confidence            9999999999999999999999987     79999999999876442211    112457999999999998765     


Q ss_pred             CCCCcCchhhHHHHHHHHhcCCCCCcccccccccc-------ccccCCCCCCccHHHHHHHHHhhhhCCCCCC-CHHHHH
Q psy4039         432 VNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE-------VNALPQLNTNVPEVMRRLVAKLLENDPSDRP-SAELAA  503 (588)
Q Consensus       432 ~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~-------~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rp-s~~e~l  503 (588)
                       ++.++|||||||++|||++|+.||.+........       .......+..+|+.+.++|.+||+.||.+|| +++++.
T Consensus       189 -~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~R~~~~~~l~  267 (294)
T 4eqm_A          189 -TDECTDIYSIGIVLYEMLVGEPPFNGETAVSIAIKHIQDSVPNVTTDVRKDIPQSLSNVILRATEKDKANRYKTIQEMK  267 (294)
T ss_dssp             -CCTTHHHHHHHHHHHHHHHSSCSSCSSCHHHHHHHHHSSCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCSSHHHHH
T ss_pred             -CCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhhccCCCcchhcccCCCHHHHHHHHHHhcCCHhHccccHHHHH
Confidence             4578999999999999999999997743211110       0111224567899999999999999999999 788877


Q ss_pred             HHHhhhh
Q psy4039         504 TVCQLYL  510 (588)
Q Consensus       504 ~~L~~~~  510 (588)
                      +.|+..+
T Consensus       268 ~~l~~~~  274 (294)
T 4eqm_A          268 DDLSSVL  274 (294)
T ss_dssp             HHHHTSS
T ss_pred             HHHHHHH
Confidence            7666443

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=100.00  E-value=2.8e-43  Score=353.77  Aligned_cols=257  Identities=14%  Similarity=0.191  Sum_probs=206.9

Q ss_pred             ccccccCCeEEeeeecccCceeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCC
Q psy4039         190 VDDVKVDDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLP  269 (588)
Q Consensus       190 ~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~  269 (588)
                      ..++..++|++.+.||+|+||.||+|++.+..||||++........               ..+.+.+|+.+++.+    
T Consensus         4 ~~~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~avK~~~~~~~~~~---------------~~~~~~~E~~~l~~l----   64 (271)
T 3kmu_A            4 HSGIDFKQLNFLTKLNENHSGELWKGRWQGNDIVVKVLKVRDWSTR---------------KSRDFNEECPRLRIF----   64 (271)
T ss_dssp             CCCCCGGGCEEEEEEEEETTEEEEEEEETTEEEEEEEECCTTCCHH---------------HHHHHHHHGGGGCCC----
T ss_pred             cCCCCHHHhHHHHHhcCCCcceEEEEEECCeeEEEEEecccccCHH---------------HHHHHHHHHHHHHhc----
Confidence            3567789999999999999999999999999999999964321111               123466788888876    


Q ss_pred             CCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcC-CCCHHHHHHHHH
Q psy4039         270 PHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCA-QLSMHERVLLFT  347 (588)
Q Consensus       270 ~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~-~l~~~~~~~i~~  347 (588)
                      +||||+++++++.+..                          ....++||||+ +|+|.+++..... .+++.+++.++.
T Consensus        65 ~h~~iv~~~~~~~~~~--------------------------~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~  118 (271)
T 3kmu_A           65 SHPNVLPVLGACQSPP--------------------------APHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFAL  118 (271)
T ss_dssp             SCTTEECEEEEECTTT--------------------------SSSCEEEEECCTTCBHHHHHHSCSSCCCCHHHHHHHHH
T ss_pred             CCCchhheEEEEccCC--------------------------CCCeEeeecccCCCcHHHHHhhcccCCCCHHHHHHHHH
Confidence            8999999999987631                          12489999999 5799999987532 589999999999


Q ss_pred             HHHHHHHHHHhCC--ceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcC
Q psy4039         348 QLLEGVTHLNMHR--TAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALAT  425 (588)
Q Consensus       348 ql~~gL~yLH~~~--IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~  425 (588)
                      |++.||.|||+++  |+||||||+|||++.+     +.++|+|||++......          ...||+.|+|||++.+.
T Consensus       119 qi~~~l~~lH~~~~~i~H~dikp~Nil~~~~-----~~~~l~~~~~~~~~~~~----------~~~~t~~y~aPE~~~~~  183 (271)
T 3kmu_A          119 DMARGMAFLHTLEPLIPRHALNSRSVMIDED-----MTARISMADVKFSFQSP----------GRMYAPAWVAPEALQKK  183 (271)
T ss_dssp             HHHHHHHHHTTSSSCCTTCCCSGGGEEECTT-----SCEEEEGGGSCCTTSCT----------TCBSCGGGSCHHHHHSC
T ss_pred             HHHHHHHHHhcCCCceecCCCccceEEEcCC-----cceeEEeccceeeeccc----------CccCCccccChhhhccC
Confidence            9999999999999  9999999999999987     78999999887543221          34689999999999865


Q ss_pred             CCCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccc----ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHH
Q psy4039         426 PGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD----YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAEL  501 (588)
Q Consensus       426 ~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~----~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e  501 (588)
                      ....   .+.++|||||||++|||++|+.||.+......    ......+..+..+|+++.+++.+||+.||++|||+++
T Consensus       184 ~~~~---~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~  260 (271)
T 3kmu_A          184 PEDT---NRRSADMWSFAVLLWELVTREVPFADLSNMEIGMKVALEGLRPTIPPGISPHVSKLMKICMNEDPAKRPKFDM  260 (271)
T ss_dssp             GGGS---CHHHHHHHHHHHHHHHHHHCSCTTTTSCHHHHHHHHHHSCCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             CCCC---CCchhhHHHHHHHHHHHHhCCCCccccChHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHH
Confidence            4210   12369999999999999999999976422211    1223345667889999999999999999999999999


Q ss_pred             HHHHHhhh
Q psy4039         502 AATVCQLY  509 (588)
Q Consensus       502 ~l~~L~~~  509 (588)
                      +++.|+..
T Consensus       261 il~~L~~l  268 (271)
T 3kmu_A          261 IVPILEKM  268 (271)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99987753

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=100.00  E-value=3.8e-43  Score=356.36  Aligned_cols=258  Identities=20%  Similarity=0.235  Sum_probs=208.1

Q ss_pred             CCccccccCCeEEeeeecccCceeEEEEEEC-CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhc
Q psy4039         188 PDVDDVKVDDIQIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVE  266 (588)
Q Consensus       188 ~~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~  266 (588)
                      ...|++..++|++.+.||+|+||+||+|.+. +..||||++.....                  ..+.+.+|+.++..+ 
T Consensus        16 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~------------------~~~~~~~E~~~l~~l-   76 (283)
T 3gen_A           16 YGSWEIDPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM------------------SEDEFIEEAKVMMNL-   76 (283)
T ss_dssp             CCTTBCCGGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTSB------------------CHHHHHHHHHHHHTC-
T ss_pred             CCCccCCHHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCC------------------CHHHHHHHHHHHhcC-
Confidence            4567888899999999999999999999998 56899999953221                  223466799999987 


Q ss_pred             CCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHH
Q psy4039         267 NLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLL  345 (588)
Q Consensus       267 ~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i  345 (588)
                         +||||+++++++.+..                            ..++||||+ +++|.+++......+++.+++.+
T Consensus        77 ---~h~~i~~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i  125 (283)
T 3gen_A           77 ---SHEKLVQLYGVCTKQR----------------------------PIFIITEYMANGCLLNYLREMRHRFQTQQLLEM  125 (283)
T ss_dssp             ---CCTTBCCEEEEECSSS----------------------------SEEEEECCCTTCBHHHHHHCGGGCCCHHHHHHH
T ss_pred             ---CCCCEeeEEEEEecCC----------------------------CeEEEEeccCCCcHHHHHHHhccCCCHHHHHHH
Confidence               8999999999987632                            389999999 68999999875558999999999


Q ss_pred             HHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcC
Q psy4039         346 FTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALAT  425 (588)
Q Consensus       346 ~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~  425 (588)
                      +.|++.||.|||++||+||||||+|||++.+     +.+||+|||+++........    ......||+.|+|||++.+.
T Consensus       126 ~~qi~~~l~~lH~~~i~H~dikp~Nili~~~-----~~~kl~Dfg~~~~~~~~~~~----~~~~~~~~~~y~aPE~~~~~  196 (283)
T 3gen_A          126 CKDVCEAMEYLESKQFLHRDLAARNCLVNDQ-----GVVKVSDFGLSRYVLDDEYT----SSVGSKFPVRWSPPEVLMYS  196 (283)
T ss_dssp             HHHHHHHHHHHHHTTCCCSSCSGGGEEECTT-----SCEEECSTTGGGGBCCHHHH----STTSTTSCGGGCCHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCccCCCCccceEEEcCC-----CCEEEccccccccccccccc----cccCCccCcccCCHHHhccC
Confidence            9999999999999999999999999999987     79999999999875442111    11234578899999999876


Q ss_pred             CCCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHH
Q psy4039         426 PGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAEL  501 (588)
Q Consensus       426 ~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e  501 (588)
                      .      ++.++|||||||++|||++ |+.||........   .........+..+++.+.+++.+||+.||.+|||+++
T Consensus       197 ~------~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~  270 (283)
T 3gen_A          197 K------FSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRPHLASEKVYTIMYSCWHEKADERPTFKI  270 (283)
T ss_dssp             C------CSHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHH
T ss_pred             C------CCchhhHHHHHHHHHHHHhCCCCCccccChhHHHHHHhcccCCCCCCcCCHHHHHHHHHHccCChhHCcCHHH
Confidence            5      4568999999999999998 9999976422211   1122233456678999999999999999999999999


Q ss_pred             HHHHHhhhh
Q psy4039         502 AATVCQLYL  510 (588)
Q Consensus       502 ~l~~L~~~~  510 (588)
                      +++.|+..+
T Consensus       271 ll~~L~~~~  279 (283)
T 3gen_A          271 LLSNILDVM  279 (283)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999887553

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=2.5e-43  Score=370.63  Aligned_cols=258  Identities=20%  Similarity=0.220  Sum_probs=199.4

Q ss_pred             ccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCC-
Q psy4039         192 DVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENL-  268 (588)
Q Consensus       192 ~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l-  268 (588)
                      .+..++|++.+.||+|+||+||+|.+.  ++.||||++....                  ........|+.+++.+... 
T Consensus        31 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~------------------~~~~~~~~e~~~l~~l~~~~   92 (360)
T 3llt_A           31 MLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNIK------------------KYTRSAKIEADILKKIQNDD   92 (360)
T ss_dssp             CEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCH------------------HHHHHHHHHHHHHHHTCCCS
T ss_pred             eEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccch------------------hhhhhhHHHHHHHHHhcccC
Confidence            344588999999999999999999995  8899999984210                  0122345588888877321 


Q ss_pred             CCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhc-CCCCHHHHHHHHH
Q psy4039         269 PPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERC-AQLSMHERVLLFT  347 (588)
Q Consensus       269 ~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~-~~l~~~~~~~i~~  347 (588)
                      ..|||||++++++.+..                            .+++||||++++|.+++.... ..+++.++..++.
T Consensus        93 ~~h~~iv~~~~~~~~~~----------------------------~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~i~~  144 (360)
T 3llt_A           93 INNNNIVKYHGKFMYYD----------------------------HMCLIFEPLGPSLYEIITRNNYNGFHIEDIKLYCI  144 (360)
T ss_dssp             TTGGGBCCEEEEEEETT----------------------------EEEEEECCCCCBHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred             CCCCCeecccceeeECC----------------------------eeEEEEcCCCCCHHHHHHhcCCCCCCHHHHHHHHH
Confidence            25999999999998632                            499999999999999998763 3599999999999


Q ss_pred             HHHHHHHHHHhCCceeccCCCCcEEEcCCCC--------------------CCCCceeeeccccccccCCCCcccccccc
Q psy4039         348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSED--------------------NTCPQLVITDFGSSYTNKSGLSMQYSSAD  407 (588)
Q Consensus       348 ql~~gL~yLH~~~IvHrDLKp~NILld~~~~--------------------~~~~~vkL~DFGla~~~~~~~~~~~~~~~  407 (588)
                      ||+.||.|||++||+||||||+|||++....                    ...+.+||+|||+|+......        
T Consensus       145 qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~--------  216 (360)
T 3llt_A          145 EILKALNYLRKMSLTHTDLKPENILLDDPYFEKSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDYH--------  216 (360)
T ss_dssp             HHHHHHHHHHHTTEECSCCSGGGEEESCTTCCEEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSCC--------
T ss_pred             HHHHHHHHHHHCCeeeCCCCcccEEEccccccccccchhcccccccccccccCCCCEEEEeccCceecCCCC--------
Confidence            9999999999999999999999999985210                    001789999999998644321        


Q ss_pred             ccccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccccc---------------------
Q psy4039         408 IELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE---------------------  466 (588)
Q Consensus       408 ~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~---------------------  466 (588)
                      ....||+.|+|||++.+..      ++.++|||||||++|||++|+.||..........                     
T Consensus       217 ~~~~gt~~y~aPE~~~~~~------~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  290 (360)
T 3llt_A          217 GSIINTRQYRAPEVILNLG------WDVSSDMWSFGCVLAELYTGSLLFRTHEHMEHLAMMESIIQPIPKNMLYEATKTN  290 (360)
T ss_dssp             CSCCSCGGGCCHHHHTTCC------CCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHTCCCCHHHHHHHTTSG
T ss_pred             cCccCcccccCcHHHcCCC------CCCccchHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHhcCCCCHHHHhhhhhcc
Confidence            1457999999999998765      4578999999999999999999996531110000                     


Q ss_pred             ----------ccccCCC-----------------CCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCcccc
Q psy4039         467 ----------VNALPQL-----------------NTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLY  518 (588)
Q Consensus       467 ----------~~~~~~~-----------------~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~  518 (588)
                                ...++..                 ....++.+.+||.+||+.||.+|||++++++         |||++
T Consensus       291 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpta~elL~---------hp~f~  360 (360)
T 3llt_A          291 GSKYVNKDELKLAWPENASSINSIKHVKKCLPLYKIIKHELFCDFLYSILQIDPTLRPSPAELLK---------HKFLE  360 (360)
T ss_dssp             GGGGEETTTTEECTTTTCSCHHHHHHHHTCCCHHHHCCCHHHHHHHHHHCCSSGGGSCCHHHHTT---------SGGGC
T ss_pred             CccccCcccceecCcccccchhhhhhhhhcccccccchHHHHHHHHHHHhcCChhhCCCHHHHhc---------CcccC
Confidence                      0000100                 0112367889999999999999999999998         99985

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=100.00  E-value=3.9e-43  Score=357.81  Aligned_cols=253  Identities=17%  Similarity=0.245  Sum_probs=201.8

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ..|.+.+.||+|+||.||+|.+.  +..||+|.+.......               ...+.+.+|+.+++.+    +|||
T Consensus        26 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~---------------~~~~~~~~e~~~l~~l----~h~~   86 (290)
T 1t4h_A           26 RFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTK---------------SERQRFKEEAEMLKGL----QHPN   86 (290)
T ss_dssp             CEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCH---------------HHHHHHHHHHHHHTTC----CCTT
T ss_pred             eeEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCH---------------HHHHHHHHHHHHHHhC----CCCC
Confidence            55899999999999999999987  7789999986422211               1224466789999887    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++++.+..                        .....+++||||+ +++|.+++.... .+++..++.++.||+.|
T Consensus        87 iv~~~~~~~~~~------------------------~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~  141 (290)
T 1t4h_A           87 IVRFYDSWESTV------------------------KGKKCIVLVTELMTSGTLKTYLKRFK-VMKIKVLRSWCRQILKG  141 (290)
T ss_dssp             BCCEEEEEEEES------------------------SSCEEEEEEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHH
T ss_pred             eeeeeeeecccc------------------------CCCceEEEEEEecCCCCHHHHHHHcc-CCCHHHHHHHHHHHHHH
Confidence            999999987632                        1234589999999 679999998764 89999999999999999


Q ss_pred             HHHHHhCC--ceeccCCCCcEEEc-CCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCc
Q psy4039         353 VTHLNMHR--TAHRDLKSDNILLD-CSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF  429 (588)
Q Consensus       353 L~yLH~~~--IvHrDLKp~NILld-~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~  429 (588)
                      |.|||+++  |+||||||+|||++ .+     +.+||+|||++........       ....||+.|+|||++.+.    
T Consensus       142 l~~lH~~~~~i~H~dikp~Nil~~~~~-----~~~kl~Dfg~~~~~~~~~~-------~~~~~t~~y~aPE~~~~~----  205 (290)
T 1t4h_A          142 LQFLHTRTPPIIHRDLKCDNIFITGPT-----GSVKIGDLGLATLKRASFA-------KAVIGTPEFMAPEMYEEK----  205 (290)
T ss_dssp             HHHHHTSSSCCCCSCCCGGGEEESSTT-----SCEEECCTTGGGGCCTTSB-------EESCSSCCCCCGGGGGTC----
T ss_pred             HHHHHcCCCCEEECCCCHHHEEEECCC-----CCEEEeeCCCccccccccc-------ccccCCcCcCCHHHHhcc----
Confidence            99999999  99999999999998 44     7899999999976443211       245699999999988643    


Q ss_pred             cCCCCCcCchhhHHHHHHHHhcCCCCCccccccccc-----cccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHH
Q psy4039         430 SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY-----EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAAT  504 (588)
Q Consensus       430 ~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~-----~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~  504 (588)
                         ++.++|||||||++|+|++|+.||.........     ........+..+++++.++|.+||+.||.+|||++++++
T Consensus       206 ---~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~  282 (290)
T 1t4h_A          206 ---YDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN  282 (290)
T ss_dssp             ---CCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTCCCGGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             ---CCCcchHHHHHHHHHHHHhCCCCCCCcCcHHHHHHHHhccCCccccCCCCCHHHHHHHHHHccCChhhCCCHHHHhh
Confidence               457899999999999999999999763221111     111122334567789999999999999999999999999


Q ss_pred             HHhhhhhcCCccccCC
Q psy4039         505 VCQLYLWAPKHWLYGA  520 (588)
Q Consensus       505 ~L~~~~~~~h~w~~~~  520 (588)
                               |||+++.
T Consensus       283 ---------h~~f~~~  289 (290)
T 1t4h_A          283 ---------HAFFQEE  289 (290)
T ss_dssp             ---------SGGGC--
T ss_pred             ---------CcccccC
Confidence                     9999743

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=100.00  E-value=2.2e-43  Score=366.47  Aligned_cols=261  Identities=18%  Similarity=0.155  Sum_probs=208.0

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEEC--Cee----EEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhh
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATFR--GVE----YALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNS  264 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~----vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~  264 (588)
                      ..+..++|++.+.||+|+||+||+|.+.  +..    ||+|.+.....                ......+.+|+.+++.
T Consensus         8 ~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~----------------~~~~~~~~~e~~~l~~   71 (325)
T 3kex_A            8 RIFKETELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSG----------------RQSFQAVTDHMLAIGS   71 (325)
T ss_dssp             CBCCTTTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTS----------------CSCBCSCCHHHHHHHT
T ss_pred             hhcCHhHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEecccccc----------------HHHHHHHHHHHHHHhc
Confidence            3456689999999999999999999986  333    78887742111                1133456779999988


Q ss_pred             hcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHH
Q psy4039         265 VENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERV  343 (588)
Q Consensus       265 l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~  343 (588)
                      +    +||||+++++++.+.                             ..++||||+ +|+|.+++......+++..+.
T Consensus        72 l----~h~~iv~~~~~~~~~-----------------------------~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~  118 (325)
T 3kex_A           72 L----DHAHIVRLLGLCPGS-----------------------------SLQLVTQYLPLGSLLDHVRQHRGALGPQLLL  118 (325)
T ss_dssp             C----CCTTBCCEEEEECBS-----------------------------SEEEEEECCTTCBSHHHHHSSGGGSCTTHHH
T ss_pred             C----CCCCcCeEEEEEcCC-----------------------------ccEEEEEeCCCCCHHHHHHHccccCCHHHHH
Confidence            7    999999999988642                             289999999 689999998765589999999


Q ss_pred             HHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHh
Q psy4039         344 LLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVAL  423 (588)
Q Consensus       344 ~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~  423 (588)
                      .++.||+.||.|||++||+||||||+|||++.+     +.+||+|||+|+.........   ......||+.|+|||++.
T Consensus       119 ~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~-----~~~kl~Dfg~a~~~~~~~~~~---~~~~~~~~~~y~aPE~~~  190 (325)
T 3kex_A          119 NWGVQIAKGMYYLEEHGMVHRNLAARNVLLKSP-----SQVQVADFGVADLLPPDDKQL---LYSEAKTPIKWMALESIH  190 (325)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSCCSSTTEEESSS-----SCEEECSCSGGGGSCCCTTCC---C-----CCTTTSCHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCCCccchheEEECCC-----CeEEECCCCcccccCcccccc---cccCCCCcccccChHHhc
Confidence            999999999999999999999999999999887     789999999998865432211   112456889999999998


Q ss_pred             cCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCH
Q psy4039         424 ATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSA  499 (588)
Q Consensus       424 ~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~  499 (588)
                      +..      ++.++|||||||++|||++ |..||.+......   .........+..+++++.+++.+||+.||.+|||+
T Consensus       191 ~~~------~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~  264 (325)
T 3kex_A          191 FGK------YTHQSDVWSYGVTVWELMTFGAEPYAGLRLAEVPDLLEKGERLAQPQICTIDVYMVMVKCWMIDENIRPTF  264 (325)
T ss_dssp             HCC------CCHHHHHHHHHHHHHHHHTTSCCTTTTSCTTHHHHHHHTTCBCCCCTTBCTTTTHHHHHHTCSCTTTSCCH
T ss_pred             cCC------CChhhHhHHhHHHHHHHHhCCCCCccccCHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHcCCChhhCcCH
Confidence            765      4578999999999999999 9999976432211   12223445566788999999999999999999999


Q ss_pred             HHHHHHHhhhhhcCC
Q psy4039         500 ELAATVCQLYLWAPK  514 (588)
Q Consensus       500 ~e~l~~L~~~~~~~h  514 (588)
                      +++++.|+...+.+.
T Consensus       265 ~el~~~l~~~~~~~~  279 (325)
T 3kex_A          265 KELANEFTRMARDPP  279 (325)
T ss_dssp             HHHHHHHHHHTTSHH
T ss_pred             HHHHHHHHHHHhcch
Confidence            999999988766543

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=100.00  E-value=3e-43  Score=400.55  Aligned_cols=259  Identities=19%  Similarity=0.264  Sum_probs=208.1

Q ss_pred             ccccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcC
Q psy4039         190 VDDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVEN  267 (588)
Q Consensus       190 ~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~  267 (588)
                      ...+.+++|++.+.||+|+||.||+|.+.  ++.||||++.+..           ...   ....+.+..|..++..+  
T Consensus       335 ~~~~~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~-----------~~~---~~~~~~~~~E~~~l~~~--  398 (674)
T 3pfq_A          335 RDRMKLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDV-----------VIQ---DDDVECTMVEKRVLALP--  398 (674)
T ss_dssp             -----CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHH-----------HHH---TTTTHHHHHHHHHHTCT--
T ss_pred             cccccccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccc-----------ccc---HHHHHHHHHHHHHHHhc--
Confidence            34567899999999999999999999997  6789999995311           000   11234456688888765  


Q ss_pred             CCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHH
Q psy4039         268 LPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLF  346 (588)
Q Consensus       268 l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~  346 (588)
                       ..||||+++++++.+..                            .+|+||||+ +|+|.+++...+ .+++..++.++
T Consensus       399 -~~~~~i~~l~~~~~~~~----------------------------~~~lV~E~~~gg~L~~~l~~~~-~~~~~~~~~~~  448 (674)
T 3pfq_A          399 -GKPPFLTQLHSCFQTMD----------------------------RLYFVMEYVNGGDLMYHIQQVG-RFKEPHAVFYA  448 (674)
T ss_dssp             -TCCTTBCCEEEECBCSS----------------------------EEEEEEECCCSCBHHHHHHHHS-SCCHHHHHHHH
T ss_pred             -cCCCeEEEEEEEEEeCC----------------------------EEEEEEeCcCCCcHHHHHHhcC-CCCHHHHHHHH
Confidence             58999999999987632                            499999999 689999998765 89999999999


Q ss_pred             HHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCC
Q psy4039         347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP  426 (588)
Q Consensus       347 ~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~  426 (588)
                      .||+.||.|||++||+||||||+||||+.+     +.+||+|||+|+.......     .....+||+.|||||++.+..
T Consensus       449 ~qi~~aL~~LH~~gIiHrDLKp~NILl~~~-----g~ikL~DFGla~~~~~~~~-----~~~~~~GT~~Y~APE~l~~~~  518 (674)
T 3pfq_A          449 AEIAIGLFFLQSKGIIYRDLKLDNVMLDSE-----GHIKIADFGMCKENIWDGV-----TTKTFCGTPDYIAPEIIAYQP  518 (674)
T ss_dssp             HHHHHHHHHHHHTSEECCCCCSTTEEECSS-----SCEEECCCTTCEECCCTTC-----CBCCCCSCSSSCCHHHHTCCC
T ss_pred             HHHHHHHHHHHhCCeEeccCChhhEEEcCC-----CcEEEeecceeeccccCCc-----ccccccCCCcccCHhhhcCCC
Confidence            999999999999999999999999999988     8999999999986433211     122578999999999997665


Q ss_pred             CCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccccc--ccccCCCCCCccHHHHHHHHHhhhhCCCCCCCH-----
Q psy4039         427 GLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSA-----  499 (588)
Q Consensus       427 ~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~--~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~-----  499 (588)
                            ++.++|||||||++|||++|+.||.+......+.  ......++..+++++++||.+||+.||.+||++     
T Consensus       519 ------~~~~~DvwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~  592 (674)
T 3pfq_A          519 ------YGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHNVAYPKSMSKEAVAICKGLMTKHPGKRLGCGPEGE  592 (674)
T ss_dssp             ------BSTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHSSCCCCCTTSCHHHHHHHHHHSCSSSTTCTTCSTTHH
T ss_pred             ------CCccceEechHHHHHHHHcCCCCCCCCCHHHHHHHHHhCCCCCCccCCHHHHHHHHHHccCCHHHCCCCCCCcH
Confidence                  4578999999999999999999998753322221  123345677899999999999999999999997     


Q ss_pred             HHHHHHHhhhhhcCCccccC
Q psy4039         500 ELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       500 ~e~l~~L~~~~~~~h~w~~~  519 (588)
                      +++++         ||||+.
T Consensus       593 ~ei~~---------h~ff~~  603 (674)
T 3pfq_A          593 RDIKE---------HAFFRY  603 (674)
T ss_dssp             HHHHS---------SGGGSS
T ss_pred             HHHhc---------CccccC
Confidence            78777         999873

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=100.00  E-value=1.5e-42  Score=366.83  Aligned_cols=262  Identities=24%  Similarity=0.397  Sum_probs=206.7

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||.||+|.+.  |+.||||++........... ..        ...+.+.+|+.+++.+   .+|||
T Consensus        94 ~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~-~~--------~~~~~~~~E~~~l~~l---~~hp~  161 (365)
T 2y7j_A           94 QKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQ-LE--------EVREATRRETHILRQV---AGHPH  161 (365)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHH-HH--------HHHHHHHHHHHHHHHH---TTCTT
T ss_pred             hhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHH-HH--------HHHHHHHHHHHHHHHh---cCCCC
Confidence            67999999999999999999996  88999999965432211111 01        1123456799999887   47999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++++....                            ..++||||+ +++|.+++.... .+++..+..++.||+.|
T Consensus       162 iv~~~~~~~~~~----------------------------~~~lv~e~~~g~~L~~~l~~~~-~l~~~~~~~i~~qi~~~  212 (365)
T 2y7j_A          162 IITLIDSYESSS----------------------------FMFLVFDLMRKGELFDYLTEKV-ALSEKETRSIMRSLLEA  212 (365)
T ss_dssp             BCCEEEEEEBSS----------------------------EEEEEECCCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHH
T ss_pred             EeEEEEEEeeCC----------------------------EEEEEEEeCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHH
Confidence            999999987632                            499999999 579999998764 79999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||+.||+||||||+|||++.+     +.+||+|||++.........      ...+||+.|+|||++.+........
T Consensus       213 L~~LH~~gi~H~Dlkp~NIl~~~~-----~~ikl~DfG~~~~~~~~~~~------~~~~gt~~y~aPE~~~~~~~~~~~~  281 (365)
T 2y7j_A          213 VSFLHANNIVHRDLKPENILLDDN-----MQIRLSDFGFSCHLEPGEKL------RELCGTPGYLAPEILKCSMDETHPG  281 (365)
T ss_dssp             HHHHHHTTEECSCCSGGGEEECTT-----CCEEECCCTTCEECCTTCCB------CCCCSCGGGCCHHHHHHTTCTTSCC
T ss_pred             HHHHHhCCeecCCCCHHHEEECCC-----CCEEEEecCcccccCCCccc------ccCCCCCCccChhhccccccccCcC
Confidence            999999999999999999999987     89999999999876543211      2467999999999997653222222


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCccccccccccc---ccc---CCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHH
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV---NAL---PQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVC  506 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~---~~~---~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L  506 (588)
                      ++.++|||||||++|||++|..||...........   ...   .+.+..+++++.++|.+||+.||++|||++++++  
T Consensus       282 ~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~--  359 (365)
T 2y7j_A          282 YGKEVDLWACGVILFTLLAGSPPFWHRRQILMLRMIMEGQYQFSSPEWDDRSSTVKDLISRLLQVDPEARLTAEQALQ--  359 (365)
T ss_dssp             BCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCHHHHSSSCHHHHHHHHHHSCSSTTTSCCHHHHHH--
T ss_pred             CCchhhHHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCCcccccCCHHHHHHHHHHcCCChhHCcCHHHHhc--
Confidence            55789999999999999999999976422111110   000   0112467889999999999999999999999999  


Q ss_pred             hhhhhcCCcccc
Q psy4039         507 QLYLWAPKHWLY  518 (588)
Q Consensus       507 ~~~~~~~h~w~~  518 (588)
                             ||||+
T Consensus       360 -------hp~f~  364 (365)
T 2y7j_A          360 -------HPFFE  364 (365)
T ss_dssp             -------SGGGC
T ss_pred             -------CcccC
Confidence                   99986

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=100.00  E-value=3.7e-43  Score=375.29  Aligned_cols=255  Identities=24%  Similarity=0.286  Sum_probs=201.0

Q ss_pred             cccCCeEEeeeecccCceeEEEEEEC-CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCC
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPH  271 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~-g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~H  271 (588)
                      ....+|.+.+.||+|+||+||+|.+. +..||||++...                     .....+|+.+++.+    +|
T Consensus        37 ~~~~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~---------------------~~~~~~E~~il~~l----~h   91 (394)
T 4e7w_A           37 QREIAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQD---------------------KRFKNRELQIMRIV----KH   91 (394)
T ss_dssp             EEEEEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECC---------------------TTSCCHHHHHHHTC----CC
T ss_pred             cccceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecC---------------------cchHHHHHHHHHhC----CC
Confidence            34478999999999999999999996 567999998431                     12234699999987    89


Q ss_pred             CceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHH---hcCCCCHHHHHHHHHH
Q psy4039         272 PNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRE---RCAQLSMHERVLLFTQ  348 (588)
Q Consensus       272 pNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~---~~~~l~~~~~~~i~~q  348 (588)
                      ||||+++++|....                      .......+++||||+++++.+.+..   ....+++..+..++.|
T Consensus        92 ~niv~l~~~~~~~~----------------------~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~q  149 (394)
T 4e7w_A           92 PNVVDLKAFFYSNG----------------------DKKDEVFLNLVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQ  149 (394)
T ss_dssp             TTBCCEEEEEEEES----------------------SSSSCEEEEEEEECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred             CCcceEEEEEEecC----------------------CCCCceEEEEEeeccCccHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence            99999999997642                      1122335889999998877766653   2447999999999999


Q ss_pred             HHHHHHHHHhCCceeccCCCCcEEEc-CCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCC
Q psy4039         349 LLEGVTHLNMHRTAHRDLKSDNILLD-CSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG  427 (588)
Q Consensus       349 l~~gL~yLH~~~IvHrDLKp~NILld-~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~  427 (588)
                      |+.||.|||++||+||||||+|||++ .+     +.+||+|||+|+....+...      ....||+.|+|||++.+...
T Consensus       150 i~~aL~~LH~~~ivHrDlkp~Nill~~~~-----~~~kL~DFG~a~~~~~~~~~------~~~~~t~~y~aPE~~~~~~~  218 (394)
T 4e7w_A          150 LLRSLAYIHSIGICHRDIKPQNLLLDPPS-----GVLKLIDFGSAKILIAGEPN------VSYICSRYYRAPELIFGATN  218 (394)
T ss_dssp             HHHHHHHHHHTTEECSCCSGGGEEEETTT-----TEEEECCCTTCEECCTTCCC------CSSCSCGGGCCHHHHTTCSS
T ss_pred             HHHHHHHHHHCCccCCCCCHHHEEEcCCC-----CcEEEeeCCCcccccCCCCC------cccccCcCccCHHHHcCCCC
Confidence            99999999999999999999999998 45     79999999999876443211      24578999999999976431


Q ss_pred             CccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccc----------------------ccccccC---------CCCCC
Q psy4039         428 LFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD----------------------YEVNALP---------QLNTN  476 (588)
Q Consensus       428 ~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~----------------------~~~~~~~---------~~~~~  476 (588)
                           ++.++||||+||++|||++|+.||.+......                      +.....+         .++..
T Consensus       219 -----~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (394)
T 4e7w_A          219 -----YTTNIDIWSTGCVMAELMQGQPLFPGESGIDQLVEIIKVLGTPSREQIKTMNPNYMEHKFPQIRPHPFSKVFRPR  293 (394)
T ss_dssp             -----CCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCGGGSSSCCCCCCCCCHHHHSCTT
T ss_pred             -----CCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhChhhhhhccccccCCcHHHhcccc
Confidence                 45789999999999999999999976421100                      0000111         12345


Q ss_pred             ccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccC
Q psy4039         477 VPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       477 ~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~  519 (588)
                      +++++.+||.+||+.||.+|||+.++++         |||++.
T Consensus       294 ~~~~~~~li~~~L~~dP~~R~t~~e~l~---------hp~f~~  327 (394)
T 4e7w_A          294 TPPDAIDLISRLLEYTPSARLTAIEALC---------HPFFDE  327 (394)
T ss_dssp             CCHHHHHHHHHHCCSSGGGSCCHHHHHT---------SGGGST
T ss_pred             CCHHHHHHHHHHhCCChhhCCCHHHHhc---------Chhhhh
Confidence            8899999999999999999999999999         999983

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=100.00  E-value=3.7e-43  Score=379.49  Aligned_cols=259  Identities=21%  Similarity=0.224  Sum_probs=201.4

Q ss_pred             cccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCC--
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENL--  268 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l--  268 (588)
                      ....+|++.+.||+|+||.||+|.+.  ++.||||++....      .            ....+.+|+.+++.+...  
T Consensus        94 ~~~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~~------~------------~~~~~~~E~~~l~~l~~~~~  155 (429)
T 3kvw_A           94 HVAYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEK------R------------FHRQAAEEIRILEHLRKQDK  155 (429)
T ss_dssp             EETTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSCH------H------------HHHHHHHHHHHHHHHHTTCT
T ss_pred             cccCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCcc------c------------hHHHHHHHHHHHHHHhhccc
Confidence            34478999999999999999999987  7899999995311      0            122345678888777543  


Q ss_pred             CCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhc-CCCCHHHHHHHHH
Q psy4039         269 PPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERC-AQLSMHERVLLFT  347 (588)
Q Consensus       269 ~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~-~~l~~~~~~~i~~  347 (588)
                      .+|+||+++++++....                            .+++|||+++++|.+++.... ..+++..+..++.
T Consensus       156 ~~~~~iv~~~~~~~~~~----------------------------~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~i~~  207 (429)
T 3kvw_A          156 DNTMNVIHMLENFTFRN----------------------------HICMTFELLSMNLYELIKKNKFQGFSLPLVRKFAH  207 (429)
T ss_dssp             TSCSCBCCEEEEEEETT----------------------------EEEEEECCCCCBHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred             cCCcCEEEEEeecccCC----------------------------eEEEEEeccCCCHHHHHHhccCCCCCHHHHHHHHH
Confidence            37899999999988632                            499999999999999998763 3599999999999


Q ss_pred             HHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCC
Q psy4039         348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG  427 (588)
Q Consensus       348 ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~  427 (588)
                      ||+.||.|||++||+||||||+|||++.+..   ..+||+|||+|+......        ...+||+.|+|||++.+.. 
T Consensus       208 qi~~aL~~LH~~~ivHrDlKp~NILl~~~~~---~~vkL~DFG~a~~~~~~~--------~~~~gt~~y~aPE~~~~~~-  275 (429)
T 3kvw_A          208 SILQCLDALHKNRIIHCDLKPENILLKQQGR---SGIKVIDFGSSCYEHQRV--------YTYIQSRFYRAPEVILGAR-  275 (429)
T ss_dssp             HHHHHHHHHHHHTEECSCCSGGGEEESSTTS---CCEEECCCTTCEETTCCC--------CSSCSCGGGCCHHHHHTBC-
T ss_pred             HHHHHHHHHHHCCeecCCCCHHHeEEccCCC---cceEEeecccceecCCcc--------cccCCCCCccChHHHhCCC-
Confidence            9999999999999999999999999998721   239999999997654321        1457999999999998765 


Q ss_pred             CccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccccc-------------------------cccc------------
Q psy4039         428 LFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE-------------------------VNAL------------  470 (588)
Q Consensus       428 ~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~-------------------------~~~~------------  470 (588)
                           ++.++|||||||++|||++|.+||.+........                         ....            
T Consensus       276 -----~~~~~DiwSlG~il~elltG~~pf~~~~~~~~l~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (429)
T 3kvw_A          276 -----YGMPIDMWSLGCILAELLTGYPLLPGEDEGDQLACMIELLGMPSQKLLDASKRAKNFVSSKGYPRYCTVTTLSDG  350 (429)
T ss_dssp             -----CCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTBTTHHHHBCTTSCBTTSCEECCCC-
T ss_pred             -----CCchHHHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHhhhhhhhccCCCCCcccccccccccc
Confidence                 4578999999999999999999997632110000                         0000            


Q ss_pred             ----------------C--------CCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccCCCCC
Q psy4039         471 ----------------P--------QLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGATPS  523 (588)
Q Consensus       471 ----------------~--------~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~~~~  523 (588)
                                      +        .++...++++.+||.+||+.||++|||++|+++         ||||+...+.
T Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dli~~~L~~dP~~Rpta~e~L~---------Hpw~~~~~~~  418 (429)
T 3kvw_A          351 SVVLNGGRSRRGKLRGPPESREWGNALKGCDDPLFLDFLKQCLEWDPAVRMTPGQALR---------HPWLRRRLPK  418 (429)
T ss_dssp             -CEECCEECTTCCEECSTTCSCHHHHTTTCCCHHHHHHHHHHTCSSTTTSCCHHHHHT---------STTTC-----
T ss_pred             cccccccccchhhccCCccchhhHhhccccchHHHHHHHHHHCCCChhhCCCHHHHhC---------ChhhccCCCC
Confidence                            0        012234788999999999999999999999999         9999965443

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=100.00  E-value=1.5e-43  Score=393.67  Aligned_cols=256  Identities=24%  Similarity=0.328  Sum_probs=210.1

Q ss_pred             ccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCC
Q psy4039         192 DVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLP  269 (588)
Q Consensus       192 ~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~  269 (588)
                      .+..++|++.+.||+|+||.||+|.+.  |+.||||++.+..           ...   ......+.+|+.+|+.+    
T Consensus       180 ~~~~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~-----------~~~---~~~~~~~~~E~~iL~~l----  241 (576)
T 2acx_A          180 PVTKNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKR-----------IKK---RKGEAMALNEKQILEKV----  241 (576)
T ss_dssp             CCCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHH-----------HHH---TTCHHHHHHHHHHHHHC----
T ss_pred             CccccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHh-----------hhh---hHHHHHHHHHHHHHHHc----
Confidence            466689999999999999999999996  8899999995311           011   11234466799999987    


Q ss_pred             CCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc-CCCCHHHHHHHHH
Q psy4039         270 PHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC-AQLSMHERVLLFT  347 (588)
Q Consensus       270 ~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~-~~l~~~~~~~i~~  347 (588)
                      +|||||++++++.+..                            .+|+||||+ +|+|.+++...+ ..+++..++.++.
T Consensus       242 ~hp~Iv~l~~~~~~~~----------------------------~l~lVmEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~  293 (576)
T 2acx_A          242 NSRFVVSLAYAYETKD----------------------------ALCLVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAA  293 (576)
T ss_dssp             CCTTBCCEEEEEECSS----------------------------EEEEEECCCCSCBHHHHHHSSSSCCCCHHHHHHHHH
T ss_pred             CCCCEeeEEEEEeeCC----------------------------EEEEEEEcCCCCcHHHHHHhcCCCCCCHHHHHHHHH
Confidence            9999999999988632                            599999999 689999998653 3499999999999


Q ss_pred             HHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCC
Q psy4039         348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG  427 (588)
Q Consensus       348 ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~  427 (588)
                      ||+.||.|||++||+||||||+|||++.+     +.+||+|||+|+....+..      ....+||+.|+|||++.+.. 
T Consensus       294 qIl~aL~yLH~~gIvHrDLKPeNILld~~-----g~vKL~DFGla~~~~~~~~------~~~~~GT~~Y~APEvl~~~~-  361 (576)
T 2acx_A          294 EICCGLEDLHRERIVYRDLKPENILLDDH-----GHIRISDLGLAVHVPEGQT------IKGRVGTVGYMAPEVVKNER-  361 (576)
T ss_dssp             HHHHHHHHHHHTTEECCCCCGGGEEECTT-----SCEEECCCTTCEECCTTCC------EECCCSCGGGCCHHHHTTCE-
T ss_pred             HHHHHHHHHHHCCEeccCCchheEEEeCC-----CCeEEEecccceecccCcc------ccccCCCccccCHHHHcCCC-
Confidence            99999999999999999999999999987     8999999999987654321      12457999999999997654 


Q ss_pred             CccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccc------ccccccCCCCCCccHHHHHHHHHhhhhCCCCCC----
Q psy4039         428 LFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD------YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRP----  497 (588)
Q Consensus       428 ~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~------~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rp----  497 (588)
                           ++.++|||||||++|||++|..||........      ........++..+++++++||.+||+.||.+||    
T Consensus       362 -----~~~~~DiwSLGvilyeLltG~~PF~~~~~~~~~~~i~~~i~~~~~~~p~~~s~~~~dLI~~lL~~dP~~R~g~~~  436 (576)
T 2acx_A          362 -----YTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEVPEEYSERFSPQARSLCSQLLCKDPAERLGCRG  436 (576)
T ss_dssp             -----ESSHHHHHHHHHHHHHHHHSSCSSSCSSSCCCHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSGGGSTTCSS
T ss_pred             -----CCccchHHHHHHHHHHHHhCCCCCcccccchhHHHHHHHhhcccccCCccCCHHHHHHHHHhccCCHHHcCCCCC
Confidence                 45789999999999999999999987432111      111223456678999999999999999999999    


Q ss_pred             -CHHHHHHHHhhhhhcCCccccC
Q psy4039         498 -SAELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       498 -s~~e~l~~L~~~~~~~h~w~~~  519 (588)
                       +++++++         |||++.
T Consensus       437 ~sa~eil~---------HpfF~~  450 (576)
T 2acx_A          437 GSAREVKE---------HPLFKK  450 (576)
T ss_dssp             SHHHHHHT---------SGGGTT
T ss_pred             CCHHHHHh---------Chhhcc
Confidence             7899888         999974

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=100.00  E-value=9.3e-44  Score=369.95  Aligned_cols=251  Identities=21%  Similarity=0.329  Sum_probs=181.9

Q ss_pred             CCeEEe---eeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCC
Q psy4039         196 DDIQIG---KFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPP  270 (588)
Q Consensus       196 ~~~~~~---~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~  270 (588)
                      ++|++.   +.||+|+||+||+|.+.  ++.||||++...                    ......+|+.+++.+   .+
T Consensus         8 ~~y~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~--------------------~~~~~~~e~~~l~~l---~~   64 (325)
T 3kn6_A            8 QHYDLDLKDKPLGEGSFSICRKCVHKKSNQAFAVKIISKR--------------------MEANTQKEITALKLC---EG   64 (325)
T ss_dssp             HHEEECTTSCCSEEETTEEEEEEEETTTCCEEEEEEEEGG--------------------GHHHHHHHHHHHHHT---TT
T ss_pred             hccccccCCCccccCCCeEEEEEEECCCCCEEEEEEEChh--------------------hhhhHHHHHHHHHHh---cC
Confidence            456664   78999999999999997  889999998431                    123345688999887   35


Q ss_pred             CCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4039         271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQL  349 (588)
Q Consensus       271 HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql  349 (588)
                      ||||+++++++.+..                            ..|+||||+ +|+|.+++.... .+++.++..++.||
T Consensus        65 h~niv~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi  115 (325)
T 3kn6_A           65 HPNIVKLHEVFHDQL----------------------------HTFLVMELLNGGELFERIKKKK-HFSETEASYIMRKL  115 (325)
T ss_dssp             CTTBCCEEEEEECSS----------------------------EEEEEECCCCSCBHHHHHHHCS-CCCHHHHHHHHHHH
T ss_pred             CCCeeEEEEEEEcCC----------------------------EEEEEEEccCCCcHHHHHHhcC-CCCHHHHHHHHHHH
Confidence            999999999998632                            489999999 579999998764 79999999999999


Q ss_pred             HHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCc
Q psy4039         350 LEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF  429 (588)
Q Consensus       350 ~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~  429 (588)
                      +.||.|||++||+||||||+|||++.+..  ...+||+|||+++........     ....+||+.|+|||++.+..   
T Consensus       116 ~~~l~~LH~~~ivH~Dlkp~NIll~~~~~--~~~~kl~Dfg~a~~~~~~~~~-----~~~~~~t~~y~aPE~~~~~~---  185 (325)
T 3kn6_A          116 VSAVSHMHDVGVVHRDLKPENLLFTDEND--NLEIKIIDFGFARLKPPDNQP-----LKTPCFTLHYAAPELLNQNG---  185 (325)
T ss_dssp             HHHHHHHHHTTEECCCCCGGGEEEEC------CEEEECCCTTCEECCC---------------------------CC---
T ss_pred             HHHHHHHHHCCCeecCCCHHHEEEecCCC--cccEEEeccccceecCCCCCc-----ccccCCCcCccCHHHhcCCC---
Confidence            99999999999999999999999986521  148999999999865442211     12457899999999997665   


Q ss_pred             cCCCCCcCchhhHHHHHHHHhcCCCCCcccccccc-------ccc--cccCCC----CCCccHHHHHHHHHhhhhCCCCC
Q psy4039         430 SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD-------YEV--NALPQL----NTNVPEVMRRLVAKLLENDPSDR  496 (588)
Q Consensus       430 ~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~-------~~~--~~~~~~----~~~~~~~l~~Li~~~L~~dP~~R  496 (588)
                         ++.++|||||||++|||++|..||........       ...  .....+    +..+++++++||.+||+.||.+|
T Consensus       186 ---~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R  262 (325)
T 3kn6_A          186 ---YDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKIKKGDFSFEGEAWKNVSQEAKDLIQGLLTVDPNKR  262 (325)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHHHHHTTTCCCCCSHHHHTSCHHHHHHHHHHHCCCTTTC
T ss_pred             ---CCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHHHHHHcCCCCCCcccccCCCHHHHHHHHHHCCCChhHC
Confidence               45689999999999999999999976322100       000  011111    13578999999999999999999


Q ss_pred             CCHHHHHHHHhhhhhcCCccccCC
Q psy4039         497 PSAELAATVCQLYLWAPKHWLYGA  520 (588)
Q Consensus       497 ps~~e~l~~L~~~~~~~h~w~~~~  520 (588)
                      ||++++++         |||++..
T Consensus       263 pt~~ell~---------h~w~~~~  277 (325)
T 3kn6_A          263 LKMSGLRY---------NEWLQDG  277 (325)
T ss_dssp             CCTTTSTT---------CGGGCTT
T ss_pred             CCHHHHhc---------ChhhccC
Confidence            99999988         9999843

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=100.00  E-value=2e-43  Score=360.82  Aligned_cols=259  Identities=19%  Similarity=0.217  Sum_probs=203.1

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEE------CCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhh
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATF------RGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNS  264 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~------~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~  264 (588)
                      ..+..++|++.+.||+|+||+||+|++      .++.||||++....     ..            ..+.+.+|+.+++.
T Consensus         5 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~-----~~------------~~~~~~~E~~~l~~   67 (295)
T 3ugc_A            5 TQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHST-----EE------------HLRDFEREIEILKS   67 (295)
T ss_dssp             -CCCGGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCC-----HH------------HHHHHHHHHHHHHT
T ss_pred             CcCCHHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCC-----HH------------HHHHHHHHHHHHHh
Confidence            345668999999999999999999985      27899999985321     10            12346679999998


Q ss_pred             hcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHH
Q psy4039         265 VENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERV  343 (588)
Q Consensus       265 l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~  343 (588)
                      +    +||||+++++++.+..                          ...+++||||+ +|+|.+++......+++..++
T Consensus        68 l----~h~~iv~~~~~~~~~~--------------------------~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~  117 (295)
T 3ugc_A           68 L----QHDNIVKYKGVCYSAG--------------------------RRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLL  117 (295)
T ss_dssp             C----CCTTBCCEEEEECHHH--------------------------HTSCEEEEECCTTCBHHHHHHHCGGGCCHHHHH
T ss_pred             C----CCCCEeeEEEEEecCC--------------------------CCceEEEEEeCCCCCHHHHHHhcccccCHHHHH
Confidence            7    8999999999986532                          11389999999 679999998875579999999


Q ss_pred             HHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHh
Q psy4039         344 LLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVAL  423 (588)
Q Consensus       344 ~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~  423 (588)
                      .++.|++.||.|||++||+||||||+|||++.+     +.+||+|||+++........  ........||+.|+|||++.
T Consensus       118 ~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~-----~~~kl~Dfg~~~~~~~~~~~--~~~~~~~~~~~~y~aPE~~~  190 (295)
T 3ugc_A          118 QYTSQICKGMEYLGTKRYIHRDLATRNILVENE-----NRVKIGDFGLTKVLPQDKEF--FKVKEPGESPIFWYAPESLT  190 (295)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEET-----TEEEECCCCSCC---------------CTTCGGGGCCHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCcccCCCCHhhEEEcCC-----CeEEEccCcccccccCCcce--eeeccCCCCccceeCcHHhc
Confidence            999999999999999999999999999999988     89999999999876543211  11112345788899999998


Q ss_pred             cCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccc-------------------ccccccccCCCCCCccHHHHHH
Q psy4039         424 ATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARN-------------------TDYEVNALPQLNTNVPEVMRRL  484 (588)
Q Consensus       424 ~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~-------------------~~~~~~~~~~~~~~~~~~l~~L  484 (588)
                      +..      ++.++|||||||++|||++|..||......                   .........+.+..+|+++.++
T Consensus       191 ~~~------~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  264 (295)
T 3ugc_A          191 ESK------FSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMI  264 (295)
T ss_dssp             HCC------CCHHHHHHHHHHHHHHHHHTTCTTCSHHHHHHHHHCTTCCTHHHHHHHHHHHHTTCCCCCCTTCCHHHHHH
T ss_pred             CCC------CChHHHHHHHHHHHHHHHhcccccCCChHHHHhhhcCccccchhHHHHHHHHhccCcCCCCcCcCHHHHHH
Confidence            765      457899999999999999999998653110                   0011223345577899999999


Q ss_pred             HHHhhhhCCCCCCCHHHHHHHHhhh
Q psy4039         485 VAKLLENDPSDRPSAELAATVCQLY  509 (588)
Q Consensus       485 i~~~L~~dP~~Rps~~e~l~~L~~~  509 (588)
                      |.+||+.||++|||++++++.|+..
T Consensus       265 i~~~l~~dp~~Rps~~el~~~L~~l  289 (295)
T 3ugc_A          265 MTECWNNNVNQRPSFRDLALRVDQI  289 (295)
T ss_dssp             HHHHSCSSGGGSCCHHHHHHHHHHH
T ss_pred             HHHHcCCChhhCCCHHHHHHHHHHH
Confidence            9999999999999999999987754

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=100.00  E-value=3e-43  Score=354.54  Aligned_cols=256  Identities=24%  Similarity=0.292  Sum_probs=196.7

Q ss_pred             ccccCCeEEeeeecccCceeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCC
Q psy4039         192 DVKVDDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPH  271 (588)
Q Consensus       192 ~i~~~~~~~~~~IG~G~fG~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~H  271 (588)
                      ++..++|++.+.||+|+||.||+|.+.+..||||++.......             .....+.+.+|+.+++.+    +|
T Consensus         3 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~~~-------------~~~~~~~~~~e~~~l~~l----~h   65 (271)
T 3dtc_A            3 EIDFAELTLEEIIGIGGFGKVYRAFWIGDEVAVKAARHDPDED-------------ISQTIENVRQEAKLFAML----KH   65 (271)
T ss_dssp             BCCTTSEEEEEEEEEETTEEEEEEEETTEEEEEEEC-----------------------CHHHHHHHHHHHHHC----CC
T ss_pred             ccchhheeeeeeeccCCCeEEEEEEEcCCeEEEEEEecCCccc-------------HHHHHHHHHHHHHHHHhc----CC
Confidence            4566899999999999999999999999999999985321110             011234567799999987    89


Q ss_pred             CceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy4039         272 PNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLL  350 (588)
Q Consensus       272 pNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~  350 (588)
                      |||+++++++.+..                            ..++||||+ +++|.+++...  .+++..++.++.|++
T Consensus        66 ~~i~~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~i~~~l~  115 (271)
T 3dtc_A           66 PNIIALRGVCLKEP----------------------------NLCLVMEFARGGPLNRVLSGK--RIPPDILVNWAVQIA  115 (271)
T ss_dssp             TTBCCEEEEECCC------------------------------CEEEEECCTTEEHHHHHTSS--CCCHHHHHHHHHHHH
T ss_pred             CCEeeEEEEEecCC----------------------------ceEEEEEcCCCCCHHHHhhcC--CCCHHHHHHHHHHHH
Confidence            99999999987632                            389999999 68999998644  899999999999999


Q ss_pred             HHHHHHHhCC---ceeccCCCCcEEEcCCCCC---CCCceeeeccccccccCCCCccccccccccccCCccccchhHHhc
Q psy4039         351 EGVTHLNMHR---TAHRDLKSDNILLDCSEDN---TCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALA  424 (588)
Q Consensus       351 ~gL~yLH~~~---IvHrDLKp~NILld~~~~~---~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~  424 (588)
                      .||.|||++|   |+||||||+|||++.+..+   ..+.+||+|||+++.......       ....||+.|+|||++.+
T Consensus       116 ~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~-------~~~~~~~~y~aPE~~~~  188 (271)
T 3dtc_A          116 RGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHRTTK-------MSAAGAYAWMAPEVIRA  188 (271)
T ss_dssp             HHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCCC--------------------CCGGGSCHHHHHH
T ss_pred             HHHHHHHhCCCCceeecCCchHHEEEecccccccccCcceEEccCCcccccccccc-------cCCCCccceeCHHHhcc
Confidence            9999999999   9999999999999863211   126899999999976543221       13569999999999987


Q ss_pred             CCCCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccc----ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHH
Q psy4039         425 TPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD----YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE  500 (588)
Q Consensus       425 ~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~----~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~  500 (588)
                      ..      ++.++||||||+++|||++|+.||.+......    .........+..+|+++.+++.+||+.||.+|||++
T Consensus       189 ~~------~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~  262 (271)
T 3dtc_A          189 SM------FSKGSDVWSYGVLLWELLTGEVPFRGIDGLAVAYGVAMNKLALPIPSTCPEPFAKLMEDCWNPDPHSRPSFT  262 (271)
T ss_dssp             CC------CSHHHHHHHHHHHHHHHHHCCCTTTTSCHHHHHHHHHTSCCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             CC------CCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHhhhcCCCCCCCCcccCHHHHHHHHHHhcCCcccCcCHH
Confidence            65      45689999999999999999999976422111    111223345678899999999999999999999999


Q ss_pred             HHHHHHh
Q psy4039         501 LAATVCQ  507 (588)
Q Consensus       501 e~l~~L~  507 (588)
                      ++++.|+
T Consensus       263 e~l~~L~  269 (271)
T 3dtc_A          263 NILDQLT  269 (271)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999776

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=100.00  E-value=6.4e-43  Score=353.53  Aligned_cols=250  Identities=21%  Similarity=0.289  Sum_probs=201.4

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||.||+|.+.  +..||+|++......                 ..+.+.+|+.+++.+    +|||
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~-----------------~~~~~~~E~~~l~~l----~h~~   67 (277)
T 3f3z_A            9 QYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVE-----------------DVDRFKQEIEIMKSL----DHPN   67 (277)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCS-----------------CHHHHHHHHHHHHTC----CCTT
T ss_pred             hhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccc-----------------hHHHHHHHHHHHHhC----CCCC
Confidence            77999999999999999999997  678999998542211                 234466799999887    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++++.+..                            ..++||||+ +++|.+++.... .+++..++.++.|++.|
T Consensus        68 i~~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~i~~~i~~~  118 (277)
T 3f3z_A           68 IIRLYETFEDNT----------------------------DIYLVMELCTGGELFERVVHKR-VFRESDAARIMKDVLSA  118 (277)
T ss_dssp             BCCEEEEEECSS----------------------------EEEEEEECCCSCBHHHHHHHHC-SCCHHHHHHHHHHHHHH
T ss_pred             EeeEEEEEecCC----------------------------eEEEEEeccCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence            999999997632                            489999999 579999998764 79999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||++||+||||||+|||+..+..  .+.+||+|||++.........      ....||+.|+|||++.+.       
T Consensus       119 l~~lH~~~i~H~dlkp~Nil~~~~~~--~~~~~l~Dfg~~~~~~~~~~~------~~~~~t~~y~aPE~~~~~-------  183 (277)
T 3f3z_A          119 VAYCHKLNVAHRDLKPENFLFLTDSP--DSPLKLIDFGLAARFKPGKMM------RTKVGTPYYVSPQVLEGL-------  183 (277)
T ss_dssp             HHHHHHTTEECCCCSGGGEEESSSST--TCCEEECCCTTCEECCTTSCB------CCCCSCTTTCCHHHHTTC-------
T ss_pred             HHHHHHCCccCCCCCHHHEEEecCCC--CCcEEEEecccceeccCccch------hccCCCCCccChHHhccc-------
Confidence            99999999999999999999933211  178999999999876543221      145699999999998653       


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCccccccccccc--cccCCCC----CCccHHHHHHHHHhhhhCCCCCCCHHHHHHHH
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV--NALPQLN----TNVPEVMRRLVAKLLENDPSDRPSAELAATVC  506 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~--~~~~~~~----~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L  506 (588)
                      ++.++|||||||++|||++|..||...........  ......+    ..+++++.++|.+||+.||.+|||+.++++  
T Consensus       184 ~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~s~~~~l~--  261 (277)
T 3f3z_A          184 YGPECDEWSAGVMMYVLLCGYPPFSAPTDSEVMLKIREGTFTFPEKDWLNVSPQAESLIRRLLTKSPKQRITSLQALE--  261 (277)
T ss_dssp             BCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHTT--
T ss_pred             CCchhhehhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCchhhhcCCHHHHHHHHHHccCChhhCcCHHHHhc--
Confidence            45789999999999999999999976432211111  1111112    267899999999999999999999999988  


Q ss_pred             hhhhhcCCccccC
Q psy4039         507 QLYLWAPKHWLYG  519 (588)
Q Consensus       507 ~~~~~~~h~w~~~  519 (588)
                             |||++.
T Consensus       262 -------h~~~~~  267 (277)
T 3f3z_A          262 -------HEWFEK  267 (277)
T ss_dssp             -------SHHHHH
T ss_pred             -------CHHHhc
Confidence                   999973

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=100.00  E-value=9.5e-44  Score=366.74  Aligned_cols=261  Identities=16%  Similarity=0.205  Sum_probs=196.9

Q ss_pred             cccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCC
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPP  270 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~  270 (588)
                      ...++|++.+.||+|+||.||+|.+.  ++.||||++.......  ..            ....+.+|+.+++.+    +
T Consensus         9 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~--~~------------~~~~~~~E~~~l~~l----~   70 (311)
T 3ork_A            9 HLSDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARD--PS------------FYLRFRREAQNAAAL----N   70 (311)
T ss_dssp             EETTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTS--HH------------HHHHHHHHHTTCCCC----C
T ss_pred             eecCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCC--HH------------HHHHHHHHHHHHHcC----C
Confidence            34488999999999999999999986  8899999996422111  11            112355677777776    8


Q ss_pred             CCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4039         271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQL  349 (588)
Q Consensus       271 HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql  349 (588)
                      ||||+++++++.....                        .....|+||||+ +++|.+++...+ .+++.+++.++.|+
T Consensus        71 hp~iv~~~~~~~~~~~------------------------~~~~~~lv~e~~~g~~L~~~l~~~~-~~~~~~~~~~~~qi  125 (311)
T 3ork_A           71 HPAIVAVYDTGEAETP------------------------AGPLPYIVMEYVDGVTLRDIVHTEG-PMTPKRAIEVIADA  125 (311)
T ss_dssp             CTTBCCEEEEEEEEET------------------------TEEEEEEEEECCCEEEHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred             CCCcceEEEeeeccCC------------------------CCcccEEEEecCCCCCHHHHHHhcC-CCCHHHHHHHHHHH
Confidence            9999999999887421                        122469999999 579999998765 79999999999999


Q ss_pred             HHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCc
Q psy4039         350 LEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF  429 (588)
Q Consensus       350 ~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~  429 (588)
                      +.||.|||++||+||||||+|||++.+     +.+||+|||+++........  ........||+.|+|||++.+..   
T Consensus       126 ~~~l~~lH~~~ivH~dlkp~Nil~~~~-----~~~kl~Dfg~a~~~~~~~~~--~~~~~~~~gt~~y~aPE~~~~~~---  195 (311)
T 3ork_A          126 CQALNFSHQNGIIHRDVKPANIMISAT-----NAVKVMDFGIARAIADSGNS--VTQTAAVIGTAQYLSPEQARGDS---  195 (311)
T ss_dssp             HHHHHHHHHTTCCCCCCCGGGEEEETT-----SCEEECCCSCC--------------------CCTTCCHHHHHTCC---
T ss_pred             HHHHHHHHHCCCCcCCCCHHHEEEcCC-----CCEEEeeccCcccccccccc--cccccccCcCcccCCHHHhcCCC---
Confidence            999999999999999999999999987     78999999999876542211  11112457999999999998765   


Q ss_pred             cCCCCCcCchhhHHHHHHHHhcCCCCCcccccccccc----ccc--cCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHH
Q psy4039         430 SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE----VNA--LPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAA  503 (588)
Q Consensus       430 ~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~----~~~--~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l  503 (588)
                         ++.++|||||||++|||++|+.||.+........    ...  ....+..+|+++.++|.+||+.||++||++.+++
T Consensus       196 ---~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l  272 (311)
T 3ork_A          196 ---VDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEM  272 (311)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHCCCCCHHHHSTTCCHHHHHHHHHHTCSSGGGSCSSHHHH
T ss_pred             ---CCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhcCCCCCcccccCCCCHHHHHHHHHHHhcCHhhChhhHHHH
Confidence               4568999999999999999999997643221110    000  1112356899999999999999999999999988


Q ss_pred             HHHhhhhhcCCcccc
Q psy4039         504 TVCQLYLWAPKHWLY  518 (588)
Q Consensus       504 ~~L~~~~~~~h~w~~  518 (588)
                      .         |+|++
T Consensus       273 ~---------~~l~~  278 (311)
T 3ork_A          273 R---------ADLVR  278 (311)
T ss_dssp             H---------HHHHH
T ss_pred             H---------HHHHH
Confidence            7         77765

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=100.00  E-value=3.5e-43  Score=372.15  Aligned_cols=255  Identities=23%  Similarity=0.267  Sum_probs=192.9

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      .++|++.+.||+|+||.||+|.+.  ++.||||++......  . .            ....+.+|+.+++.+    +||
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--~-~------------~~~~~~~E~~~l~~l----~hp   84 (371)
T 2xrw_A           24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQN--Q-T------------HAKRAYRELVLMKCV----NHK   84 (371)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSS--H-H------------HHHHHHHHHHHHHHC----CCT
T ss_pred             hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCC--h-H------------HHHHHHHHHHHHHhc----CCC
Confidence            489999999999999999999986  889999999642111  0 0            123455789999887    899


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      ||+++++++....                      ........|+||||++|+|.+++..   .+++..+..++.||+.|
T Consensus        85 niv~~~~~~~~~~----------------------~~~~~~~~~lv~e~~~~~l~~~~~~---~~~~~~~~~i~~qi~~a  139 (371)
T 2xrw_A           85 NIIGLLNVFTPQK----------------------SLEEFQDVYIVMELMDANLCQVIQM---ELDHERMSYLLYQMLCG  139 (371)
T ss_dssp             TBCCEEEEECSCC----------------------STTTCCEEEEEEECCSEEHHHHHHS---CCCHHHHHHHHHHHHHH
T ss_pred             CccceEEeecccc----------------------ccccccceEEEEEcCCCCHHHHHhh---ccCHHHHHHHHHHHHHH
Confidence            9999999987632                      1122336899999999999998853   79999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||++||+||||||+|||++.+     +.+||+|||+++.......      .....||+.|+|||++.+..      
T Consensus       140 l~~lH~~~ivH~Dlkp~NIl~~~~-----~~~kl~Dfg~a~~~~~~~~------~~~~~gt~~y~aPE~~~~~~------  202 (371)
T 2xrw_A          140 IKHLHSAGIIHRDLKPSNIVVKSD-----CTLKILDFGLARTAGTSFM------MTPYVVTRYYRAPEVILGMG------  202 (371)
T ss_dssp             HHHHHHTTCCCSCCCGGGEEECTT-----SCEEECCCCC----------------------CTTCCHHHHTTCC------
T ss_pred             HHHHHHCCeecccCCHHHEEEcCC-----CCEEEEEeecccccccccc------cCCceecCCccCHHHhcCCC------
Confidence            999999999999999999999987     7999999999986543211      12457999999999998754      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCccccccccccc------------------------cccCCC--------------C
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV------------------------NALPQL--------------N  474 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~------------------------~~~~~~--------------~  474 (588)
                      ++.++|||||||++|||++|+.||.+......+..                        ...+..              +
T Consensus       203 ~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (371)
T 2xrw_A          203 YKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFP  282 (371)
T ss_dssp             CCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHC-CCCCCHHHHTTSCHHHHHHHHSSCCCCCCCHHHHSCGGGSC
T ss_pred             CCchHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHhhhHHHHHHhhCccccccchhhhcccccCc
Confidence            45789999999999999999999976321110000                        000000              0


Q ss_pred             ------CCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccC
Q psy4039         475 ------TNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       475 ------~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~  519 (588)
                            ...++++++||.+||+.||.+|||++++++         |||++.
T Consensus       283 ~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~---------hp~~~~  324 (371)
T 2xrw_A          283 ADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQ---------HPYINV  324 (371)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHH---------SHHHHT
T ss_pred             ccccccccccHHHHHHHHHHCcCChhhCCCHHHHhC---------Ccchhh
Confidence                  012678999999999999999999999999         999973

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.5e-43  Score=371.15  Aligned_cols=257  Identities=21%  Similarity=0.218  Sum_probs=199.2

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      .++|++.+.||+|+||.||+|.+.  ++.||||++.......            ......+.+.+|+.+++.+    +||
T Consensus         9 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~------------~~~~~~~~~~~E~~~l~~l----~h~   72 (346)
T 1ua2_A            9 AKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSE------------AKDGINRTALREIKLLQEL----SHP   72 (346)
T ss_dssp             ----CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------------------CTHHHHHHHHHHHC----CCT
T ss_pred             hcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcch------------hhhhhhHHHHHHHHHHhhC----CCC
Confidence            388999999999999999999987  7899999985321110            0011234566899999998    899


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      ||+++++++.+..                            ..++||||++++|.+++......+++.++..++.|+++|
T Consensus        73 ~iv~~~~~~~~~~----------------------------~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~  124 (346)
T 1ua2_A           73 NIIGLLDAFGHKS----------------------------NISLVFDFMETDLEVIIKDNSLVLTPSHIKAYMLMTLQG  124 (346)
T ss_dssp             TBCCEEEEECCTT----------------------------CCEEEEECCSEEHHHHHTTCCSSCCSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeeCC----------------------------ceEEEEEcCCCCHHHHHHhcCcCCCHHHHHHHHHHHHHH
Confidence            9999999987632                            389999999999999998766679999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||++||+||||||+|||++.+     +.+||+|||+++.......     ......||+.|+|||++.+...     
T Consensus       125 l~~lH~~~ivH~Dlkp~Nil~~~~-----~~~kl~Dfg~a~~~~~~~~-----~~~~~~~t~~y~aPE~~~~~~~-----  189 (346)
T 1ua2_A          125 LEYLHQHWILHRDLKPNNLLLDEN-----GVLKLADFGLAKSFGSPNR-----AYTHQVVTRWYRAPELLFGARM-----  189 (346)
T ss_dssp             HHHHHHTTCCCCCCCGGGEEECTT-----CCEEECCCGGGSTTTSCCC-----CCCCSCCCCTTCCHHHHTTCSC-----
T ss_pred             HHHHHHCCEECCCCCHHHEEEcCC-----CCEEEEecccceeccCCcc-----cCCcccccccccCchHhhCCCC-----
Confidence            999999999999999999999987     8999999999987643221     1124579999999999975431     


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcccccccccc----------cccc---------------CC-----CCCCccHHHH
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE----------VNAL---------------PQ-----LNTNVPEVMR  482 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~----------~~~~---------------~~-----~~~~~~~~l~  482 (588)
                      ++.++|||||||++|||++|.+||.+........          ...+               +.     +...++++++
T Consensus       190 ~~~~~DiwslG~il~ell~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (346)
T 1ua2_A          190 YGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLL  269 (346)
T ss_dssp             CCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCCHHHHCTTCCHHHH
T ss_pred             CCchhhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHcCCCChhhhhhhccCcccccccccCCCChHHhhccCCHHHH
Confidence            3467999999999999999999997642111000          0000               00     1245678999


Q ss_pred             HHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccC
Q psy4039         483 RLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       483 ~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~  519 (588)
                      +||.+||+.||++|||++|+++         |||+..
T Consensus       270 ~li~~~L~~dP~~Rpt~~ell~---------h~~f~~  297 (346)
T 1ua2_A          270 DLIQGLFLFNPCARITATQALK---------MKYFSN  297 (346)
T ss_dssp             HHHHHHHCSSTTTSCCHHHHHT---------SGGGTS
T ss_pred             HHHHHHhccChhhCCCHHHHhc---------Chhhhc
Confidence            9999999999999999999999         999984

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=100.00  E-value=5.3e-43  Score=360.14  Aligned_cols=254  Identities=20%  Similarity=0.232  Sum_probs=195.8

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      +++|++.+.||+|+||+||+|.+.  ++.||||++.....   ...            ..+.+.+|+.+++.+    +||
T Consensus         2 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~------------~~~~~~~E~~~l~~l----~h~   62 (311)
T 4agu_A            2 MEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESED---DPV------------IKKIALREIRMLKQL----KHP   62 (311)
T ss_dssp             -CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC----HH------------HHHHHHHHHHHHHHC----CCT
T ss_pred             cccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeecccc---chH------------HHHHHHHHHHHHHhC----CCC
Confidence            378999999999999999999997  88999999854221   111            123455799999988    899


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCC-CcHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYN-TDLRNYLRERCAQLSMHERVLLFTQLLE  351 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~-gsL~~~L~~~~~~l~~~~~~~i~~ql~~  351 (588)
                      ||+++++++.+..                            ..++||||++ ++|.+++... ..+++..+..++.|++.
T Consensus        63 ~i~~~~~~~~~~~----------------------------~~~lv~e~~~~~~l~~~~~~~-~~~~~~~~~~i~~~l~~  113 (311)
T 4agu_A           63 NLVNLLEVFRRKR----------------------------RLHLVFEYCDHTVLHELDRYQ-RGVPEHLVKSITWQTLQ  113 (311)
T ss_dssp             TBCCEEEEEEETT----------------------------EEEEEEECCSEEHHHHHHHTS-SCCCHHHHHHHHHHHHH
T ss_pred             CccchhheeecCC----------------------------eEEEEEEeCCCchHHHHHhhh-cCCCHHHHHHHHHHHHH
Confidence            9999999998632                            4899999996 5677766544 37999999999999999


Q ss_pred             HHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccC
Q psy4039         352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF  431 (588)
Q Consensus       352 gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~  431 (588)
                      ||.|||++||+||||||+|||++.+     +.+||+|||+++........     .....||+.|+|||++.+...    
T Consensus       114 ~l~~lH~~~ivH~dlkp~Nil~~~~-----~~~kl~Dfg~~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~----  179 (311)
T 4agu_A          114 AVNFCHKHNCIHRDVKPENILITKH-----SVIKLCDFGFARLLTGPSDY-----YDDEVATRWYRSPELLVGDTQ----  179 (311)
T ss_dssp             HHHHHHHTTEECCCCSGGGEEECTT-----SCEEECCCTTCEECC-----------------GGGCCHHHHHTCSC----
T ss_pred             HHHHHHHCCCcCCCCChhhEEEcCC-----CCEEEeeCCCchhccCcccc-----cCCCcCCccccChHHHhcCCC----
Confidence            9999999999999999999999987     79999999999876532211     114578999999999976431    


Q ss_pred             CCCCcCchhhHHHHHHHHhcCCCCCccccccccc------------------------cccccCC---------CCCCcc
Q psy4039         432 VNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY------------------------EVNALPQ---------LNTNVP  478 (588)
Q Consensus       432 ~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~------------------------~~~~~~~---------~~~~~~  478 (588)
                       ++.++|||||||++|||++|..||.+.......                        .....+.         ....++
T Consensus       180 -~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (311)
T 4agu_A          180 -YGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLIPRHQQVFSTNQYFSGVKIPDPEDMEPLELKFPNIS  258 (311)
T ss_dssp             -CCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHTCGGGTTCCCCCCSSCCCHHHHCTTCC
T ss_pred             -CCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcccccccccccccccccccCcCCCccccchhhhhccccc
Confidence             457899999999999999999999763211000                        0000000         013578


Q ss_pred             HHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccCC
Q psy4039         479 EVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGA  520 (588)
Q Consensus       479 ~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~  520 (588)
                      +++.+|+.+||+.||.+|||++++++         |||++..
T Consensus       259 ~~~~~li~~~L~~dP~~Rpt~~ell~---------hp~f~~~  291 (311)
T 4agu_A          259 YPALGLLKGCLHMDPTERLTCEQLLH---------HPYFENI  291 (311)
T ss_dssp             HHHHHHHHHHCCSSTTTSCCHHHHHT---------SGGGTTC
T ss_pred             HHHHHHHHHHccCChhhcCCHHHHhc---------ChHHHhc
Confidence            89999999999999999999999999         9999844

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=100.00  E-value=1.6e-43  Score=375.47  Aligned_cols=248  Identities=23%  Similarity=0.308  Sum_probs=194.9

Q ss_pred             EEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEE
Q psy4039         199 QIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVV  276 (588)
Q Consensus       199 ~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~  276 (588)
                      ...+.||+|+||.||+|.+.  +..||||++.....                 ...+.+.+|+.+++.+    +|||||+
T Consensus        92 ~~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~-----------------~~~~~~~~E~~~l~~l----~hpnIv~  150 (373)
T 2x4f_A           92 SKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGM-----------------KDKEEVKNEISVMNQL----DHANLIQ  150 (373)
T ss_dssp             EEEEECC-----CEEEEEETTTCCEEEEEEEECCSH-----------------HHHHHHHHHHHHHTTC----CCTTBCC
T ss_pred             ecceEEecCcCEEEEEEEEcCCCcEEEEEEEccccc-----------------ccHHHHHHHHHHHHhC----CCCCCCe
Confidence            34678999999999999986  88999999964221                 0123466799999887    8999999


Q ss_pred             EeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q psy4039         277 MHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTH  355 (588)
Q Consensus       277 l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~y  355 (588)
                      +++++.+..                            .+++||||+ +++|.+++......+++..++.++.||+.||.|
T Consensus       151 ~~~~~~~~~----------------------------~~~lv~E~~~~~~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~  202 (373)
T 2x4f_A          151 LYDAFESKN----------------------------DIVLVMEYVDGGELFDRIIDESYNLTELDTILFMKQICEGIRH  202 (373)
T ss_dssp             EEEEEECSS----------------------------EEEEEEECCTTCEEHHHHHHTGGGCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEECC----------------------------EEEEEEeCCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            999998632                            489999999 579999998765579999999999999999999


Q ss_pred             HHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCC
Q psy4039         356 LNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS  435 (588)
Q Consensus       356 LH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~  435 (588)
                      ||++||+||||||+|||++.+..   +.+||+|||+++........      ...+||+.|+|||++.+..      ++.
T Consensus       203 LH~~~ivH~Dlkp~NIll~~~~~---~~~kl~DFG~a~~~~~~~~~------~~~~gt~~y~aPE~~~~~~------~~~  267 (373)
T 2x4f_A          203 MHQMYILHLDLKPENILCVNRDA---KQIKIIDFGLARRYKPREKL------KVNFGTPEFLAPEVVNYDF------VSF  267 (373)
T ss_dssp             HHHTTEECCCCCGGGEEEEETTT---TEEEECCCSSCEECCTTCBC------CCCCSSCTTCCHHHHTTCB------CCH
T ss_pred             HHHCCcccccCCHHHEEEecCCC---CcEEEEeCCCceecCCcccc------ccccCCCcEeChhhccCCC------CCc
Confidence            99999999999999999953322   68999999999876543221      1356999999999997654      456


Q ss_pred             cCchhhHHHHHHHHhcCCCCCccccccccccc------cccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhh
Q psy4039         436 KSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV------NALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLY  509 (588)
Q Consensus       436 ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~------~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~  509 (588)
                      ++|||||||++|||++|..||.+.........      ...+..+..+++++++||.+||+.||.+|||++++++     
T Consensus       268 ~~DiwslG~il~elltg~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rps~~e~l~-----  342 (373)
T 2x4f_A          268 PTDMWSVGVIAYMLLSGLSPFLGDNDAETLNNILACRWDLEDEEFQDISEEAKEFISKLLIKEKSWRISASEALK-----  342 (373)
T ss_dssp             HHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCSCSGGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH-----
T ss_pred             HHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhccCCCChhhhccCCHHHHHHHHHHcCCChhhCCCHHHHhc-----
Confidence            89999999999999999999976432211111      1111223568999999999999999999999999999     


Q ss_pred             hhcCCccccC
Q psy4039         510 LWAPKHWLYG  519 (588)
Q Consensus       510 ~~~~h~w~~~  519 (588)
                          |||++.
T Consensus       343 ----hp~~~~  348 (373)
T 2x4f_A          343 ----HPWLSD  348 (373)
T ss_dssp             ----SHHHHC
T ss_pred             ----CcCcCC
Confidence                999963

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=5.3e-43  Score=365.57  Aligned_cols=262  Identities=22%  Similarity=0.270  Sum_probs=209.9

Q ss_pred             CCccccccCCeEEeeeecccCceeEEEEEEC-------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHH
Q psy4039         188 PDVDDVKVDDIQIGKFIAKGTNAVVYEATFR-------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDM  260 (588)
Q Consensus       188 ~~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~  260 (588)
                      ...+++..++|++++.||+|+||.||+|.+.       +..||||++.....                ....+.+.+|+.
T Consensus        37 ~~~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~----------------~~~~~~~~~E~~  100 (344)
T 1rjb_A           37 DLKWEFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKAD----------------SSEREALMSELK  100 (344)
T ss_dssp             CGGGBCCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC----------------------CHHHHHHHH
T ss_pred             CcCcccCHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccC----------------HHHHHHHHHHHH
Confidence            3457788899999999999999999999972       56899999953211                112345678999


Q ss_pred             HHhhhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcC----
Q psy4039         261 LMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCA----  335 (588)
Q Consensus       261 il~~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~----  335 (588)
                      ++..+   .+||||+++++++.+..                            ..++||||+ +|+|.+++.....    
T Consensus       101 ~l~~l---~~hp~iv~~~~~~~~~~----------------------------~~~lv~e~~~~g~L~~~l~~~~~~~~~  149 (344)
T 1rjb_A          101 MMTQL---GSHENIVNLLGACTLSG----------------------------PIYLIFEYCCYGDLLNYLRSKREKFSE  149 (344)
T ss_dssp             HHHHH---CCCTTBCCEEEEECSSS----------------------------SCEEEEECCTTCBHHHHHHTTTTCC--
T ss_pred             HHHhh---cCCCCeeeEEEEEeeCC----------------------------ccEEEEecCCCCcHHHHHhhccccccc
Confidence            99987   58999999999987632                            389999999 6799999986532    


Q ss_pred             ------------------CCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCC
Q psy4039         336 ------------------QLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKS  397 (588)
Q Consensus       336 ------------------~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~  397 (588)
                                        .+++..++.++.||+.||.|||++||+||||||+|||++.+     +.+||+|||+++....
T Consensus       150 ~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIll~~~-----~~~kL~Dfg~~~~~~~  224 (344)
T 1rjb_A          150 DEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAARNVLVTHG-----KVVKICDFGLARDIMS  224 (344)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHHHHHHHTTEEETTCSGGGEEEETT-----TEEEECCCGGGSCGGG
T ss_pred             cccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChhhEEEcCC-----CcEEeCCCccCccccc
Confidence                              37999999999999999999999999999999999999987     8999999999986544


Q ss_pred             CCccccccccccccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc----ccccccCC
Q psy4039         398 GLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD----YEVNALPQ  472 (588)
Q Consensus       398 ~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~----~~~~~~~~  472 (588)
                      .....   ......||+.|+|||++.+..      ++.++|||||||++|||++ |..||.+......    ......+.
T Consensus       225 ~~~~~---~~~~~~~t~~y~aPE~~~~~~------~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~  295 (344)
T 1rjb_A          225 DSNYV---VRGNARLPVKWMAPESLFEGI------YTIKSDVWSYGILLWEIFSLGVNPYPGIPVDANFYKLIQNGFKMD  295 (344)
T ss_dssp             CTTSE---EETTEEECGGGCCHHHHHHCC------CCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHHTTCCCC
T ss_pred             Cccce---eccCccCccCccCHHHhccCC------CChhHhHHHHHHHHHHHHcCCCCCcccCCcHHHHHHHHhcCCCCC
Confidence            22211   112456889999999998765      4578999999999999998 9999977432221    11223344


Q ss_pred             CCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhh
Q psy4039         473 LNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYL  510 (588)
Q Consensus       473 ~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~  510 (588)
                      .+..+++++.+|+.+||+.||.+|||++++++.|+..+
T Consensus       296 ~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~  333 (344)
T 1rjb_A          296 QPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFLGCQL  333 (344)
T ss_dssp             CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHH
Confidence            56778999999999999999999999999999887654

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=100.00  E-value=1.9e-43  Score=373.81  Aligned_cols=263  Identities=21%  Similarity=0.278  Sum_probs=207.9

Q ss_pred             ccccccCCeEEeeeecccCceeEEEEEEC-------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHH
Q psy4039         190 VDDVKVDDIQIGKFIAKGTNAVVYEATFR-------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLM  262 (588)
Q Consensus       190 ~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il  262 (588)
                      .+++..++|++.+.||+|+||+||+|.+.       +..||||++......                .....+.+|+.++
T Consensus        65 ~~~~~~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~----------------~~~~~~~~E~~~l  128 (367)
T 3l9p_A           65 LKEVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSE----------------QDELDFLMEALII  128 (367)
T ss_dssp             SCBCCGGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCH----------------HHHHHHHHHHHHH
T ss_pred             hhhcCHhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccCh----------------hhHHHHHHHHHHH
Confidence            34566789999999999999999999964       568999998431110                0123456799999


Q ss_pred             hhhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc------C
Q psy4039         263 NSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC------A  335 (588)
Q Consensus       263 ~~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~------~  335 (588)
                      +.+    +|||||++++++.+..                            ..++||||+ +|+|.+++....      .
T Consensus       129 ~~l----~hpnIv~~~~~~~~~~----------------------------~~~lv~e~~~~g~L~~~l~~~~~~~~~~~  176 (367)
T 3l9p_A          129 SKF----NHQNIVRCIGVSLQSL----------------------------PRFILLELMAGGDLKSFLRETRPRPSQPS  176 (367)
T ss_dssp             HHC----CCTTBCCEEEEECSSS----------------------------SCEEEEECCTTEEHHHHHHHHSCCSSSCC
T ss_pred             HhC----CCCCCCeEEEEEecCC----------------------------CCEEEEEeCCCCCHHHHHHhhccccCccc
Confidence            987    9999999999987632                            279999999 679999998753      3


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCcc
Q psy4039         336 QLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVA  415 (588)
Q Consensus       336 ~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~  415 (588)
                      .+++.+++.++.||+.||.|||++||+||||||+|||++.+..+  ..+||+|||+|+.......   ........||+.
T Consensus       177 ~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~--~~~kL~DFG~a~~~~~~~~---~~~~~~~~~t~~  251 (367)
T 3l9p_A          177 SLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPG--RVAKIGDFGMARDIYRAGY---YRKGGCAMLPVK  251 (367)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTT--CCEEECCCHHHHHHHHHSS---CTTCCGGGSCGG
T ss_pred             cccHHHHHHHHHHHHHHHHHHHhCCeeCCCCChhhEEEecCCCC--ceEEECCCccccccccccc---cccCCCcCCccc
Confidence            59999999999999999999999999999999999999865211  4699999999986432111   111124568999


Q ss_pred             ccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCccccccccc---cccccCCCCCCccHHHHHHHHHhhhh
Q psy4039         416 LMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTDY---EVNALPQLNTNVPEVMRRLVAKLLEN  491 (588)
Q Consensus       416 Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~~---~~~~~~~~~~~~~~~l~~Li~~~L~~  491 (588)
                      |+|||++.+..      ++.++|||||||++|||++ |..||.........   .....+..+..+++++.+|+.+||+.
T Consensus       252 y~aPE~~~~~~------~~~~~DvwslG~il~ellt~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~  325 (367)
T 3l9p_A          252 WMPPEAFMEGI------FTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPKNCPGPVYRIMTQCWQH  325 (367)
T ss_dssp             GCCHHHHHHCC------CCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCS
T ss_pred             EECHHHhcCCC------CCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHcCC
Confidence            99999998765      4578999999999999998 99999774332211   12233455678999999999999999


Q ss_pred             CCCCCCCHHHHHHHHhhhhh
Q psy4039         492 DPSDRPSAELAATVCQLYLW  511 (588)
Q Consensus       492 dP~~Rps~~e~l~~L~~~~~  511 (588)
                      ||.+|||++++++.|+....
T Consensus       326 dP~~Rps~~eil~~l~~~~~  345 (367)
T 3l9p_A          326 QPEDRPNFAIILERIEYCTQ  345 (367)
T ss_dssp             SGGGSCCHHHHHHHHHHHHH
T ss_pred             CHhHCcCHHHHHHHHHHHhh
Confidence            99999999999998876543

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=100.00  E-value=3.1e-43  Score=355.40  Aligned_cols=260  Identities=22%  Similarity=0.307  Sum_probs=203.1

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCC
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENL  268 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l  268 (588)
                      ..+..++|.+++.||+|+||.||+|.+.  ++.||||++....            ..  .......+.+|+.+++.+   
T Consensus         6 g~~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~------------~~--~~~~~~~~~~e~~~l~~l---   68 (276)
T 2h6d_A            6 GRVKIGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQK------------IR--SLDVVGKIKREIQNLKLF---   68 (276)
T ss_dssp             -CCEETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHH------------HH--HTTCHHHHHHHHHHHHTC---
T ss_pred             CcceeccEEEEeeecCCCCeEEEEEEECCCCceEEEEEecccc------------cc--chhHHHHHHHHHHHHhcC---
Confidence            4556799999999999999999999987  8899999985311            00  011234567799999887   


Q ss_pred             CCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHH
Q psy4039         269 PPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFT  347 (588)
Q Consensus       269 ~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~  347 (588)
                       +||||+++++++.+..                            ..++||||+ +++|.+++.... .+++..+..++.
T Consensus        69 -~h~~i~~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~  118 (276)
T 2h6d_A           69 -RHPHIIKLYQVISTPT----------------------------DFFMVMEYVSGGELFDYICKHG-RVEEMEARRLFQ  118 (276)
T ss_dssp             -CCTTBCCEEEEEECSS----------------------------EEEEEEECCCSCBHHHHHHHHC-SCCHHHHHHHHH
T ss_pred             -CCCCEeEEEEEEecCC----------------------------eEEEEEeccCCCcHHHHHhccC-CCCHHHHHHHHH
Confidence             8999999999987632                            489999999 579999998765 799999999999


Q ss_pred             HHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCC
Q psy4039         348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG  427 (588)
Q Consensus       348 ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~  427 (588)
                      |++.||.|||++||+||||||+|||++.+     +.+||+|||++.........      ....||+.|+|||++.+...
T Consensus       119 qi~~~l~~lH~~~i~H~dl~p~Nil~~~~-----~~~~l~dfg~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~  187 (276)
T 2h6d_A          119 QILSAVDYCHRHMVVHRDLKPENVLLDAH-----MNAKIADFGLSNMMSDGEFL------RTSCGSPNYAAPEVISGRLY  187 (276)
T ss_dssp             HHHHHHHHHHHHCSSCCCCCGGGEEECTT-----SCEEECCCCGGGCCCC-------------------CCTGGGTTSCC
T ss_pred             HHHHHHHHHHHCCCccCCCChhhEEECCC-----CCEEEeecccccccCCCcce------ecccCCccccCHHHHcCCCC
Confidence            99999999999999999999999999987     78999999999876543211      13568999999999876541


Q ss_pred             CccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccccc--ccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHH
Q psy4039         428 LFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATV  505 (588)
Q Consensus       428 ~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~--~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~  505 (588)
                           .+.++||||||+++|||++|..||..........  ......++..+++++.+++.+||+.||.+|||++++++ 
T Consensus       188 -----~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~l~-  261 (276)
T 2h6d_A          188 -----AGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFKKIRGGVFYIPEYLNRSVATLLMHMLQVDPLKRATIKDIRE-  261 (276)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH-
T ss_pred             -----CCccchHHHHHHHHHHHHhCCCCCCCCcHHHHHHHhhcCcccCchhcCHHHHHHHHHHccCChhhCCCHHHHHh-
Confidence                 2357999999999999999999997643221111  11223456778999999999999999999999999999 


Q ss_pred             HhhhhhcCCccccCCCC
Q psy4039         506 CQLYLWAPKHWLYGATP  522 (588)
Q Consensus       506 L~~~~~~~h~w~~~~~~  522 (588)
                              |||++...+
T Consensus       262 --------h~~~~~~~~  270 (276)
T 2h6d_A          262 --------HEWFKQDLP  270 (276)
T ss_dssp             --------SHHHHTTCC
T ss_pred             --------ChhhccCch
Confidence                    999986554

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=100.00  E-value=1e-42  Score=369.93  Aligned_cols=264  Identities=21%  Similarity=0.231  Sum_probs=212.7

Q ss_pred             CCccccccCCeEEeeeecccCceeEEEEEEC---------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhH
Q psy4039         188 PDVDDVKVDDIQIGKFIAKGTNAVVYEATFR---------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNE  258 (588)
Q Consensus       188 ~~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~---------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~E  258 (588)
                      ...+++..++|.+++.||+|+||.||+|.+.         +..||||++....   ..             .....+.+|
T Consensus        61 ~~~~~i~~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~---~~-------------~~~~~~~~E  124 (382)
T 3tt0_A           61 DPRWELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDA---TE-------------KDLSDLISE  124 (382)
T ss_dssp             CTTTBCCGGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTC---CH-------------HHHHHHHHH
T ss_pred             CcccccchhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeecccc---CH-------------HHHHHHHHH
Confidence            3456777799999999999999999999974         3679999985321   11             012345679


Q ss_pred             HHHHhhhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc---
Q psy4039         259 DMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC---  334 (588)
Q Consensus       259 i~il~~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~---  334 (588)
                      +.+++.+   .+|||||++++++.+..                            .+++||||+ +|+|.+++....   
T Consensus       125 ~~~l~~l---~~hpnIv~~~~~~~~~~----------------------------~~~lv~e~~~~g~L~~~l~~~~~~~  173 (382)
T 3tt0_A          125 MEMMKMI---GKHKNIINLLGACTQDG----------------------------PLYVIVEYASKGNLREYLQARRPPG  173 (382)
T ss_dssp             HHHHHHH---CCCTTBCCEEEEECSSS----------------------------SCEEEEECCTTCBHHHHHHHTCCSS
T ss_pred             HHHHHHh---cCCchhhhheeeeccCC----------------------------ceEEEEEecCCCcHHHHHHHhcccc
Confidence            9999887   58999999999987632                            389999999 579999998753   


Q ss_pred             ------------CCCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccc
Q psy4039         335 ------------AQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQ  402 (588)
Q Consensus       335 ------------~~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~  402 (588)
                                  ..+++.+++.++.||+.||.|||++||+||||||+|||++.+     +.+||+|||+|+.........
T Consensus       174 ~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~-----~~~kL~DFG~a~~~~~~~~~~  248 (382)
T 3tt0_A          174 LEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTED-----NVMKIADFGLARDIHHIDYYK  248 (382)
T ss_dssp             SSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTT-----CCEEECSCSCCCCSSCCCTTC
T ss_pred             cccccccccccccccCHHHHHHHHHHHHHHHHHHHhCCEecCCCCcceEEEcCC-----CcEEEcccCcccccccccccc
Confidence                        249999999999999999999999999999999999999987     799999999998765432211


Q ss_pred             cccccccccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCcc
Q psy4039         403 YSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVP  478 (588)
Q Consensus       403 ~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~  478 (588)
                         ......||+.|+|||++.+..      ++.++|||||||++|||++ |..||.+......   ......+..+..++
T Consensus       249 ---~~~~~~~t~~y~aPE~~~~~~------~~~~~DiwslG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (382)
T 3tt0_A          249 ---KTTNGRLPVKWMAPEALFDRI------YTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCT  319 (382)
T ss_dssp             ---CCTTCCCGGGGSCHHHHHSCC------CCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCCCCCCSSCC
T ss_pred             ---cccCCCCCcceeCHHHhcCCC------CCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCccCC
Confidence               112456889999999998754      4578999999999999999 9999976432211   12233445567899


Q ss_pred             HHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhc
Q psy4039         479 EVMRRLVAKLLENDPSDRPSAELAATVCQLYLWA  512 (588)
Q Consensus       479 ~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~  512 (588)
                      +++.+++.+||+.||++|||++++++.|+..+..
T Consensus       320 ~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~  353 (382)
T 3tt0_A          320 NELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVAL  353 (382)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998877643

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=100.00  E-value=1.5e-42  Score=360.77  Aligned_cols=258  Identities=15%  Similarity=0.128  Sum_probs=203.9

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||.||+|.+.  ++.||||++....                   ....+.+|+.+++.+   .+|||
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-------------------~~~~~~~E~~~l~~l---~~h~~   66 (330)
T 2izr_A            9 PNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKS-------------------RAPQLHLEYRFYKQL---GSGDG   66 (330)
T ss_dssp             TTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTC-------------------SSCCHHHHHHHHHHH---CSCTT
T ss_pred             CCeEEEEEeeccCCceEEEEEECCCCcEEEEEEecccc-------------------chHHHHHHHHHHHHh---hCCCC
Confidence            78999999999999999999975  8999999985321                   234567899999987   58999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      |+++++++.+..                            ..++||||++++|.+++......+++..++.++.|++.||
T Consensus        67 i~~~~~~~~~~~----------------------------~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l  118 (330)
T 2izr_A           67 IPQVYYFGPCGK----------------------------YNAMVLELLGPSLEDLFDLCDRTFSLKTVLMIAIQLISRM  118 (330)
T ss_dssp             SCCEEEEEEETT----------------------------EEEEEEECCCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEecCC----------------------------ccEEEEEeCCCCHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence            999999987732                            4899999999999999987655899999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccc--cccccccccCCccccchhHHhcCCCCccC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQ--YSSADIELGGNVALMAPEVALATPGLFSF  431 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~--~~~~~~~~~GT~~Y~APE~l~~~~~~~~~  431 (588)
                      .|||++||+||||||+|||++.+.......+||+|||+|+.........  .........||+.|+|||++.+..     
T Consensus       119 ~~LH~~~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-----  193 (330)
T 2izr_A          119 EYVHSKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKE-----  193 (330)
T ss_dssp             HHHHHTTEECCCCCGGGEEECCGGGTCTTSEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCC-----
T ss_pred             HHHHhCCeeccCCCHHHeeeccCCCCCCceEEEEEcccceeeecCCCCccccccccCCcCCCccccChHHHcCCC-----
Confidence            9999999999999999999997732222339999999998764422111  011123568999999999998765     


Q ss_pred             CCCCcCchhhHHHHHHHHhcCCCCCcccccccc---ccc---c----ccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHH
Q psy4039         432 VNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD---YEV---N----ALPQLNTNVPEVMRRLVAKLLENDPSDRPSAEL  501 (588)
Q Consensus       432 ~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~---~~~---~----~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e  501 (588)
                       ++.++|||||||++|||++|+.||.+......   +..   .    ........+| ++.+++..||+.||.+||++++
T Consensus       194 -~~~~~Di~slG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~p-~~~~li~~~l~~~p~~RP~~~~  271 (330)
T 2izr_A          194 -QSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLCENFP-EMATYLRYVRRLDFFEKPDYDY  271 (330)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHSSCTTTTCCCSSHHHHHHHHHHHHHHSCHHHHTTTCH-HHHHHHHHHHHCCTTCCCCHHH
T ss_pred             -CCchhHHHHHHHHHHHHhcCCCCccccccccHHHHHHHHHhhhccCCHHHHhccCh-HHHHHHHHHHhCCCCCCCCHHH
Confidence             45689999999999999999999986422111   000   0    0011223466 9999999999999999999999


Q ss_pred             HHHHHhhhh
Q psy4039         502 AATVCQLYL  510 (588)
Q Consensus       502 ~l~~L~~~~  510 (588)
                      +.+.|+..+
T Consensus       272 l~~~l~~~~  280 (330)
T 2izr_A          272 LRKLFTDLF  280 (330)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999887554

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=100.00  E-value=1.2e-43  Score=382.04  Aligned_cols=260  Identities=24%  Similarity=0.295  Sum_probs=195.9

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|.+.+.||+|+||+||+|.+.  ++.||||++..........         ........+.+|+.+|+.+    +|||
T Consensus       135 ~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~---------~~~~~~~~~~~E~~~l~~l----~hpn  201 (419)
T 3i6u_A          135 DEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSA---------READPALNVETEIEILKKL----NHPC  201 (419)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC-----------------CCHHHHHHHHHHC----CCTT
T ss_pred             ccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhccccc---------ccchhHHHHHHHHHHHHhC----CCCC
Confidence            78999999999999999999987  7899999996532211110         0011233567899999998    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      ||++++++...                             ..|+||||+ +|+|.+++.... .+++.++..++.|++.|
T Consensus       202 iv~l~~~~~~~-----------------------------~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~i~~qi~~~  251 (419)
T 3i6u_A          202 IIKIKNFFDAE-----------------------------DYYIVLELMEGGELFDKVVGNK-RLKEATCKLYFYQMLLA  251 (419)
T ss_dssp             BCCCCEEEESS-----------------------------EEEEEEECCTTCBGGGGTSSSC-CCCHHHHHHHHHHHHHH
T ss_pred             EeeEEEEEecC-----------------------------ceEEEEEcCCCCcHHHHHhccC-CCCHHHHHHHHHHHHHH
Confidence            99999998642                             389999999 679998887554 79999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||++||+||||||+|||++.+..+  ..+||+|||+|+.......      ....+||+.|+|||++.+....   .
T Consensus       252 l~~LH~~~ivHrDlkp~NIll~~~~~~--~~~kl~DFG~a~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~---~  320 (419)
T 3i6u_A          252 VQYLHENGIIHRDLKPENVLLSSQEED--CLIKITDFGHSKILGETSL------MRTLCGTPTYLAPEVLVSVGTA---G  320 (419)
T ss_dssp             HHHHHHTTCCCSCCCGGGEEESSSSSS--CCEEECCSSTTTSCC-----------------CTTCCTTTTC----C---T
T ss_pred             HHHHHHCCccccCCChHhEEEecCCCc--ceEEEeecccceecCCCcc------ccccCCCCCccCceeeecCCCC---C
Confidence            999999999999999999999765211  5799999999987654221      1246799999999998642110   1


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcccccccccc----cc---ccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHH
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE----VN---ALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATV  505 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~----~~---~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~  505 (588)
                      ++.++|||||||++|||++|..||..........    ..   ..+..+..+++++.+||.+||+.||.+|||++++++ 
T Consensus       321 ~~~~~DiwslG~il~~lltg~~pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~-  399 (419)
T 3i6u_A          321 YNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALR-  399 (419)
T ss_dssp             THHHHHHHHHHHHHHHHHHSSCSSCCCSSSCCHHHHHHTTCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH-
T ss_pred             CCchhhhHhHHHHHHHHHHCCCCCCCCcchHHHHHHHhcCCCCCCchhhcccCHHHHHHHHHHccCChhHCcCHHHHhC-
Confidence            3468999999999999999999997643221111    11   112223568899999999999999999999999999 


Q ss_pred             HhhhhhcCCcccc
Q psy4039         506 CQLYLWAPKHWLY  518 (588)
Q Consensus       506 L~~~~~~~h~w~~  518 (588)
                              |||++
T Consensus       400 --------hp~~~  404 (419)
T 3i6u_A          400 --------HPWLQ  404 (419)
T ss_dssp             --------SGGGC
T ss_pred             --------CcccC
Confidence                    99995

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=100.00  E-value=5.6e-43  Score=366.40  Aligned_cols=261  Identities=22%  Similarity=0.282  Sum_probs=202.6

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||.||+|.+.  ++.||||++....   .. .            ....+.+|+.+++.+    +|||
T Consensus        11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~---~~-~------------~~~~~~~E~~~l~~l----~h~~   70 (353)
T 2b9h_A           11 SDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFD---KP-L------------FALRTLREIKILKHF----KHEN   70 (353)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCS---SH-H------------HHHHHHHHHHHHHHC----CCTT
T ss_pred             cceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccc---cc-h------------HHHHHHHHHHHHHhC----cCCC
Confidence            88999999999999999999997  8999999985321   11 0            123345799999987    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      |+++++++....                       .......++||||++|+|.+++...  .+++..+..++.|++.||
T Consensus        71 iv~~~~~~~~~~-----------------------~~~~~~~~lv~e~~~~~L~~~~~~~--~~~~~~~~~~~~qi~~~L  125 (353)
T 2b9h_A           71 IITIFNIQRPDS-----------------------FENFNEVYIIQELMQTDLHRVISTQ--MLSDDHIQYFIYQTLRAV  125 (353)
T ss_dssp             BCCEEEECCCSC-----------------------STTCCCEEEEECCCSEEHHHHHHHC--CCCHHHHHHHHHHHHHHH
T ss_pred             cCCeeeeecccc-----------------------cCccceEEEEEeccCccHHHHHhhc--CCCHHHHHHHHHHHHHHH
Confidence            999999876531                       1122358999999999999999875  899999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccc-----cccccccccCCccccchhHHhcCCCC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQ-----YSSADIELGGNVALMAPEVALATPGL  428 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~-----~~~~~~~~~GT~~Y~APE~l~~~~~~  428 (588)
                      .|||++||+||||||+|||++.+     +.+||+|||+++.........     .........||+.|+|||++.+... 
T Consensus       126 ~~LH~~~ivH~Dlkp~Nil~~~~-----~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-  199 (353)
T 2b9h_A          126 KVLHGSNVIHRDLKPSNLLINSN-----CDLKVCDFGLARIIDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAK-  199 (353)
T ss_dssp             HHHHHTTEECSCCCGGGEEECTT-----CCEEECCCTTCEECC----------------CCCCCCGGGCCHHHHHSCCC-
T ss_pred             HHHHHCCeecCCCCHHHeEEcCC-----CcEEEEecccccccccccccccCccccccchhhccccccccCCeeeccCCC-
Confidence            99999999999999999999987     799999999998765422110     0011224579999999999865321 


Q ss_pred             ccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccccc----------------------------------ccccCCCC
Q psy4039         429 FSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE----------------------------------VNALPQLN  474 (588)
Q Consensus       429 ~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~----------------------------------~~~~~~~~  474 (588)
                          ++.++|||||||++|||++|+.||.+........                                  .......+
T Consensus       200 ----~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (353)
T 2b9h_A          200 ----YSRAMDVWSCGCILAELFLRRPIFPGRDYRHQLLLIFGIIGTPHSDNDLRCIESPRAREYIKSLPMYPAAPLEKMF  275 (353)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCSTTTTTTCCCHHHHHHHHTSCCCCCCCHHHHS
T ss_pred             ----ccchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCchhccccccccchhhHHhhcccCCCCcchhhhc
Confidence                4568999999999999999999997642110000                                  00000112


Q ss_pred             CCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccCC
Q psy4039         475 TNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGA  520 (588)
Q Consensus       475 ~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~  520 (588)
                      ..+++++.+||.+||+.||++|||++++++         |||++..
T Consensus       276 ~~~~~~~~~li~~~L~~dP~~Rpt~~ell~---------hp~~~~~  312 (353)
T 2b9h_A          276 PRVNPKGIDLLQRMLVFDPAKRITAKEALE---------HPYLQTY  312 (353)
T ss_dssp             TTSCHHHHHHHHHHSCSSGGGSCCHHHHHT---------SGGGTTT
T ss_pred             ccCCHHHHHHHHHhcCcCcccCCCHHHHhc---------Ccccccc
Confidence            468899999999999999999999999999         9999843

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=100.00  E-value=6e-43  Score=363.68  Aligned_cols=278  Identities=20%  Similarity=0.302  Sum_probs=202.3

Q ss_pred             CccccccCCeEEeeeecccCceeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCC
Q psy4039         189 DVDDVKVDDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENL  268 (588)
Q Consensus       189 ~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l  268 (588)
                      ....+.+++|++.+.||+|+||.||+|++.++.||||++....                    ...+..|.+++..  ..
T Consensus         6 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~vavK~~~~~~--------------------~~~~~~e~~~~~~--~~   63 (336)
T 3g2f_A            6 SEPSLDLDNLKLLELIGRGRYGAVYKGSLDERPVAVKVFSFAN--------------------RQNFINEKNIYRV--PL   63 (336)
T ss_dssp             ---CCCTTSEEEEEEEEECSSEEEEEEEETTEEEEEEEEEGGG--------------------HHHHHHHHHHHTS--TT
T ss_pred             cCCCcChHHhheeeecccCCCeEEEEEEECCeEEEEEEeeccc--------------------hhhHHHHHHHHHH--Hh
Confidence            4456788999999999999999999999999999999985311                    1112223333321  12


Q ss_pred             CCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHH
Q psy4039         269 PPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFT  347 (588)
Q Consensus       269 ~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~  347 (588)
                      ++||||+++++.+....                       ......+++||||+ +|+|.+++...  ..++..++.++.
T Consensus        64 ~~h~~i~~~~~~~~~~~-----------------------~~~~~~~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~i~~  118 (336)
T 3g2f_A           64 MEHDNIARFIVGDERVT-----------------------ADGRMEYLLVMEYYPNGSLXKYLSLH--TSDWVSSCRLAH  118 (336)
T ss_dssp             CCCTTBCCEEEEEEEEC-----------------------TTSCEEEEEEECCCTTCBHHHHHHHC--CBCHHHHHHHHH
T ss_pred             ccCcchhhheecccccc-----------------------cCCCceEEEEEecCCCCcHHHHHhhc--ccchhHHHHHHH
Confidence            48999999998776531                       12233589999999 67999999876  669999999999


Q ss_pred             HHHHHHHHHHhC---------CceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccc---cccccccccCCcc
Q psy4039         348 QLLEGVTHLNMH---------RTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQ---YSSADIELGGNVA  415 (588)
Q Consensus       348 ql~~gL~yLH~~---------~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~---~~~~~~~~~GT~~  415 (588)
                      ||++||.|||++         ||+||||||+|||++.+     +.+||+|||+|+.........   .........||+.
T Consensus       119 qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~-----~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~  193 (336)
T 3g2f_A          119 SVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKND-----GTCVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIR  193 (336)
T ss_dssp             HHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEECTT-----SCEEECCCTTCEECSSSSCC---------CCTTSCGG
T ss_pred             HHHHHHHHHHhhhccccccccceeecccccceEEEcCC-----CcEEEeeccceeecccccccCccccccccccCCCccc
Confidence            999999999999         99999999999999987     799999999998765422111   1111224579999


Q ss_pred             ccchhHHhcCCCCcc-CCCCCcCchhhHHHHHHHHhcCCCCCccccccccc----------------------cccccCC
Q psy4039         416 LMAPEVALATPGLFS-FVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY----------------------EVNALPQ  472 (588)
Q Consensus       416 Y~APE~l~~~~~~~~-~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~----------------------~~~~~~~  472 (588)
                      |+|||++.+...... ..++.++|||||||++|||++|..||........+                      .....+.
T Consensus       194 y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (336)
T 3g2f_A          194 YMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVPEYQMAFQTEVGNHPTFEDMQVLVSREKQRPK  273 (336)
T ss_dssp             GCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSCCCCCCCTTHHHHCSSCCHHHHHHHHTTSCCCCC
T ss_pred             eeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCccchhHHHHhhhcccCCCchHHHHHhhhcccccCCC
Confidence            999999976421100 01235789999999999999998776542111110                      0111222


Q ss_pred             CCCC------ccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccCCC
Q psy4039         473 LNTN------VPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGAT  521 (588)
Q Consensus       473 ~~~~------~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~~  521 (588)
                      ++..      +++++.+||.+||+.||++|||++++++.|+..+   ++|.+...
T Consensus       274 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~~ll---~~~~~~~~  325 (336)
T 3g2f_A          274 FPEAWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERMAELM---MIWERNKS  325 (336)
T ss_dssp             CCTTCCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHH---HCCCC---
T ss_pred             CCcccccccchHHHHHHHHHHHhcCChhhCcchHHHHHHHHHHH---HHHHhccc
Confidence            3222      4568999999999999999999999999998877   88887443

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=100.00  E-value=1.6e-42  Score=358.67  Aligned_cols=262  Identities=25%  Similarity=0.303  Sum_probs=205.9

Q ss_pred             CCeEEeeeecccCceeEEEEEEC---CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR---GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~---g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      ++|++.+.||+|+||.||+|.+.   ++.||||++.......               .....+.+|+.+++.+.. .+||
T Consensus        11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~---------------~~~~~~~~e~~~l~~l~~-~~h~   74 (326)
T 1blx_A           11 QQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEE---------------GMPLSTIREVAVLRHLET-FEHP   74 (326)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTT---------------SCBCTHHHHHHHHHHHHH-TCCT
T ss_pred             hceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccc---------------cCCchhhHHHHHHHhhhc-cCCC
Confidence            78999999999999999999984   7899999986422111               122345568877776532 2799


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhc-CCCCHHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERC-AQLSMHERVLLFTQLLE  351 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~-~~l~~~~~~~i~~ql~~  351 (588)
                      ||+++++++....                       .......++||||++|+|.+++.... ..+++..++.++.|++.
T Consensus        75 ~i~~~~~~~~~~~-----------------------~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~  131 (326)
T 1blx_A           75 NVVRLFDVCTVSR-----------------------TDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLR  131 (326)
T ss_dssp             TBCCEEEEEEEEE-----------------------CSSEEEEEEEEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHH
T ss_pred             CeEeeeeeeeecc-----------------------cCCCceEEEEEecCCCCHHHHHHhcccCCCCHHHHHHHHHHHHH
Confidence            9999999987421                       11233599999999999999998753 35999999999999999


Q ss_pred             HHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccC
Q psy4039         352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF  431 (588)
Q Consensus       352 gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~  431 (588)
                      ||.|||++||+||||||+|||++.+     +.+||+|||+++......      ......||+.|+|||++.+..     
T Consensus       132 ~l~~lH~~gi~H~dlkp~Nili~~~-----~~~kl~Dfg~~~~~~~~~------~~~~~~~~~~y~aPE~~~~~~-----  195 (326)
T 1blx_A          132 GLDFLHSHRVVHRDLKPQNILVTSS-----GQIKLADFGLARIYSFQM------ALTSVVVTLWYRAPEVLLQSS-----  195 (326)
T ss_dssp             HHHHHHHTTCCCCCCCGGGEEECTT-----CCEEECSCCSCCCCCGGG------GGCCCCCCCTTCCHHHHTTCC-----
T ss_pred             HHHHHHHCCceeccCCHHHeEEcCC-----CCEEEecCcccccccCCC------CccccccccceeCHHHHhcCC-----
Confidence            9999999999999999999999987     799999999997654321      112457899999999997654     


Q ss_pred             CCCCcCchhhHHHHHHHHhcCCCCCcccccccc---------------cc--------------ccccCCCCCCccHHHH
Q psy4039         432 VNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD---------------YE--------------VNALPQLNTNVPEVMR  482 (588)
Q Consensus       432 ~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~---------------~~--------------~~~~~~~~~~~~~~l~  482 (588)
                       ++.++|||||||++|||++|+.||.+......               +.              ......+...++++++
T Consensus       196 -~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (326)
T 1blx_A          196 -YATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGK  274 (326)
T ss_dssp             -CCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHH
T ss_pred             -CCcchhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHcCCCCcccCccccccchhhhcccCcchhhhccccCCHHHH
Confidence             45789999999999999999999976321100               00              0011123457899999


Q ss_pred             HHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccCCCC
Q psy4039         483 RLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGATP  522 (588)
Q Consensus       483 ~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~~~  522 (588)
                      +||.+||+.||.+|||++++++         |||++....
T Consensus       275 ~li~~~L~~dP~~Rpt~~e~l~---------hp~~~~~~~  305 (326)
T 1blx_A          275 DLLLKCLTFNPAKRISAYSALS---------HPYFQDLER  305 (326)
T ss_dssp             HHHHHHSCSSTTTSCCHHHHHT---------SGGGTTCCC
T ss_pred             HHHHHHcCCCcccCCCHHHHhc---------Cccccccch
Confidence            9999999999999999999998         999984433

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=100.00  E-value=4.7e-43  Score=381.31  Aligned_cols=257  Identities=22%  Similarity=0.296  Sum_probs=210.7

Q ss_pred             CCccccccCCeEEeeeecccCceeEEEEEEC-CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhc
Q psy4039         188 PDVDDVKVDDIQIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVE  266 (588)
Q Consensus       188 ~~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~  266 (588)
                      ...|++..++|++.+.||+|+||.||+|.+. +..||||++....                  ...+.+.+|+.+|+.+ 
T Consensus       180 ~~~~~i~~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~------------------~~~~~~~~E~~~l~~l-  240 (454)
T 1qcf_A          180 KDAWEIPRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS------------------MSVEAFLAEANVMKTL-  240 (454)
T ss_dssp             TTCSBCCGGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTS------------------BCHHHHHHHHHHHTTC-
T ss_pred             ccceeechHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCC------------------ccHHHHHHHHHHHhhC-
Confidence            4567888899999999999999999999997 7889999995321                  1234567899999987 


Q ss_pred             CCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh-cCCCCHHHHHH
Q psy4039         267 NLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER-CAQLSMHERVL  344 (588)
Q Consensus       267 ~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~-~~~l~~~~~~~  344 (588)
                         +|||||++++++.+.                             .+++||||+ +|+|.+++... ...+++..++.
T Consensus       241 ---~h~~iv~l~~~~~~~-----------------------------~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~  288 (454)
T 1qcf_A          241 ---QHDKLVKLHAVVTKE-----------------------------PIYIITEFMAKGSLLDFLKSDEGSKQPLPKLID  288 (454)
T ss_dssp             ---CCTTBCCEEEEECSS-----------------------------SCEEEECCCTTCBHHHHHHSHHHHTCCHHHHHH
T ss_pred             ---CCCCEeeEEEEEeCC-----------------------------ccEEEEeecCCCcHHHHHHhccCCCCCHHHHHH
Confidence               899999999998642                             279999999 68999999854 23789999999


Q ss_pred             HHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhc
Q psy4039         345 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALA  424 (588)
Q Consensus       345 i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~  424 (588)
                      ++.||+.||.|||+++|+||||||+|||++.+     +.+||+|||+++........    ......+|+.|+|||++..
T Consensus       289 ~~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~-----~~~kl~DFG~a~~~~~~~~~----~~~~~~~~~~y~aPE~~~~  359 (454)
T 1qcf_A          289 FSAQIAEGMAFIEQRNYIHRDLRAANILVSAS-----LVCKIADFGLARVIEDNEYT----AREGAKFPIKWTAPEAINF  359 (454)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSSCSGGGEEECTT-----CCEEECSTTGGGGBCCHHHH----TTCSSSSCGGGSCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCccCCCCCHHHEEECCC-----CcEEEeeCCCceEcCCCcee----ccCCCcccccccCHHHhcc
Confidence            99999999999999999999999999999987     89999999999876442111    1113457889999999987


Q ss_pred             CCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHH
Q psy4039         425 TPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE  500 (588)
Q Consensus       425 ~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~  500 (588)
                      ..      ++.++|||||||++|||++ |+.||.+......   .......+.+..+|+++.++|.+||+.||++|||++
T Consensus       360 ~~------~~~~~DvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~  433 (454)
T 1qcf_A          360 GS------FTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALERGYRMPRPENCPEELYNIMMRCWKNRPEERPTFE  433 (454)
T ss_dssp             CC------CCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             CC------CCcHHHHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHccCChhHCcCHH
Confidence            65      4578999999999999999 9999976422211   112233455678999999999999999999999999


Q ss_pred             HHHHHHhhhh
Q psy4039         501 LAATVCQLYL  510 (588)
Q Consensus       501 e~l~~L~~~~  510 (588)
                      ++++.|+.++
T Consensus       434 ~i~~~L~~~~  443 (454)
T 1qcf_A          434 YIQSVLDDFY  443 (454)
T ss_dssp             HHHHHHHTSS
T ss_pred             HHHHHHHHHH
Confidence            9999888654

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=100.00  E-value=3e-43  Score=359.69  Aligned_cols=261  Identities=23%  Similarity=0.313  Sum_probs=197.7

Q ss_pred             ccCCeEEeeeecccCceeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         194 KVDDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       194 ~~~~~~~~~~IG~G~fG~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ..++|++.+.||+|+||+||+|++.++.||||++...                    ....+.+|.+++...  .++|||
T Consensus         6 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~--------------------~~~~~~~e~~~~~~~--~l~h~n   63 (301)
T 3q4u_A            6 VARDITLLECVGKGRYGEVWRGSWQGENVAVKIFSSR--------------------DEKSWFRETELYNTV--MLRHEN   63 (301)
T ss_dssp             CGGGCEEEEEEEECSSEEEEEEEETTEEEEEEEECGG--------------------GHHHHHHHHHHHHHT--CCCCTT
T ss_pred             ccCcEEEEEeeccCCCcEEEEEEECCEEEEEEEeccc--------------------cchhhHHHHHHHHHh--hccCcC
Confidence            3489999999999999999999999999999998421                    112233456665542  138999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++++.+..                        .....+++||||+ +|+|.++++..  .+++..++.++.|++.|
T Consensus        64 iv~~~~~~~~~~------------------------~~~~~~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~i~~~i~~~  117 (301)
T 3q4u_A           64 ILGFIASDMTSR------------------------HSSTQLWLITHYHEMGSLYDYLQLT--TLDTVSCLRIVLSIASG  117 (301)
T ss_dssp             BCCEEEEEEEEE------------------------TTEEEEEEEECCCTTCBHHHHHTTC--CBCHHHHHHHHHHHHHH
T ss_pred             eeeEEEeecccc------------------------CCCceeEEehhhccCCCHHHHHhhc--ccCHHHHHHHHHHHHHH
Confidence            999999977631                        1233589999999 57999999654  89999999999999999


Q ss_pred             HHHHH--------hCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhc
Q psy4039         353 VTHLN--------MHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALA  424 (588)
Q Consensus       353 L~yLH--------~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~  424 (588)
                      |.|||        +++|+||||||+|||++.+     +.+||+|||+|+......... ........||+.|+|||++.+
T Consensus       118 l~~lH~~~~~~~~~~~ivH~Dlkp~Nill~~~-----~~~kl~Dfg~a~~~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~  191 (301)
T 3q4u_A          118 LAHLHIEIFGTQGKPAIAHRDLKSKNILVKKN-----GQCCIADLGLAVMHSQSTNQL-DVGNNPRVGTKRYMAPEVLDE  191 (301)
T ss_dssp             HHHHHSCBCSTTCBCEEECSCCCGGGEEECTT-----SCEEECCCTTCEEEETTTTEE-ECCCCCCCCCGGGCCHHHHTT
T ss_pred             HHHHHHhhhhccCCCCeecCCCChHhEEEcCC-----CCEEEeeCCCeeecccccccc-cccccccccccceeChhhhcC
Confidence            99999        9999999999999999987     799999999998754422211 111124579999999999976


Q ss_pred             CCCCccCCCCCcCchhhHHHHHHHHhcC----------CCCCcccccccc---------ccccccCCCC-----CCccHH
Q psy4039         425 TPGLFSFVNYSKSDAWTAGTVAYEIFGH----------DNPFYQSARNTD---------YEVNALPQLN-----TNVPEV  480 (588)
Q Consensus       425 ~~~~~~~~~~~ksDVwS~Gvil~ElltG----------~~Pf~~~~~~~~---------~~~~~~~~~~-----~~~~~~  480 (588)
                      ....-...++.++|||||||++|||++|          ..||........         ......+..+     ..++++
T Consensus       192 ~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (301)
T 3q4u_A          192 TIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPSFEDMRKVVCVDQQRPNIPNRWFSDPTLTS  271 (301)
T ss_dssp             CCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGGGGGSHHHHH
T ss_pred             cCCCCcccCCchhhHHHHHHHHHHHHhhhcCccccccccccccccCCCCcchhhhhHHHhccCCCCCCChhhccCccHHH
Confidence            5321100123579999999999999999          888865321110         0111122222     236688


Q ss_pred             HHHHHHHhhhhCCCCCCCHHHHHHHHhh
Q psy4039         481 MRRLVAKLLENDPSDRPSAELAATVCQL  508 (588)
Q Consensus       481 l~~Li~~~L~~dP~~Rps~~e~l~~L~~  508 (588)
                      +.+|+.+||+.||.+|||++++++.|+.
T Consensus       272 l~~li~~cl~~dP~~Rps~~~i~~~L~~  299 (301)
T 3q4u_A          272 LAKLMKECWYQNPSARLTALRIKKTLTK  299 (301)
T ss_dssp             HHHHHHHHCCSSGGGSCCHHHHHHHHHH
T ss_pred             HHHHHHHHhhcChhhCCCHHHHHHHHhc
Confidence            9999999999999999999999997764

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=100.00  E-value=1.6e-43  Score=374.70  Aligned_cols=261  Identities=20%  Similarity=0.233  Sum_probs=188.1

Q ss_pred             CccccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhc
Q psy4039         189 DVDDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVE  266 (588)
Q Consensus       189 ~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~  266 (588)
                      ..+++. ++|++.+.||+|+||.||+|.+.  |+.||||++.....   ..            ...+.+.+|+.+++.+ 
T Consensus        23 ~~~~~~-~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~---~~------------~~~~~~~~E~~~l~~l-   85 (367)
T 2fst_X           23 TIWEVP-ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQ---SI------------IHAKRTYRELRLLKHM-   85 (367)
T ss_dssp             EEEEEE-TTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTS---SH------------HHHHHHHHHHHHHHHC-
T ss_pred             cccCCC-CceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCcccc---CH------------HHHHHHHHHHHHHHhC-
Confidence            334444 88999999999999999999886  88999999853211   10            0223456799999987 


Q ss_pred             CCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHH
Q psy4039         267 NLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLF  346 (588)
Q Consensus       267 ~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~  346 (588)
                         +||||+++++++....                      ........|+|||+++++|.+++...  .+++..+..++
T Consensus        86 ---~hpnIv~~~~~~~~~~----------------------~~~~~~~~~lv~e~~~~~L~~~~~~~--~l~~~~~~~i~  138 (367)
T 2fst_X           86 ---KHENVIGLLDVFTPAR----------------------SLEEFNDVYLVTHLMGADLNNIVKCQ--KLTDDHVQFLI  138 (367)
T ss_dssp             ---CCTTBCCCSEEECSCS----------------------SGGGCCCCEEEEECCCEECC-----C--CCCHHHHHHHH
T ss_pred             ---CCCCCCcEEEEEecCC----------------------ccccCCeEEEEecccCCCHHHHHhcC--CCCHHHHHHHH
Confidence               8999999999987531                      11112348999999999999998764  89999999999


Q ss_pred             HHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCC
Q psy4039         347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP  426 (588)
Q Consensus       347 ~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~  426 (588)
                      .||++||.|||++||+||||||+|||++.+     +.+||+|||+++.....        .....||+.|+|||++.+..
T Consensus       139 ~qi~~aL~~LH~~givH~Dlkp~NIll~~~-----~~~kL~DFG~a~~~~~~--------~~~~~~t~~y~aPE~~~~~~  205 (367)
T 2fst_X          139 YQILRGLKYIHSADIIHRDLKPSNLAVNED-----CELKILDFGLARHTADE--------MTGYVATRWYRAPEIMLNWM  205 (367)
T ss_dssp             HHHHHHHHHHHHTTCCCCCCCGGGEEECTT-----CCEEECC-----------------------CCCTTCCHHHHTTCC
T ss_pred             HHHHHHHHHHHHCCeeeCCCCHhhEEECCC-----CCEEEeecccccccccc--------CCCcCcCcCccChHHHcCCc
Confidence            999999999999999999999999999987     89999999999765432        12457999999999997632


Q ss_pred             CCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccccc-------------------------cccC--------CC
Q psy4039         427 GLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV-------------------------NALP--------QL  473 (588)
Q Consensus       427 ~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~-------------------------~~~~--------~~  473 (588)
                      .     ++.++|||||||++|||++|+.||.+.........                         ...+        ..
T Consensus       206 ~-----~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (367)
T 2fst_X          206 H-----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANV  280 (367)
T ss_dssp             S-----CCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHTTCCCHHHHHHHHTSCCCCCCCHHHH
T ss_pred             C-----CCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHhhhHHHHHHHhccCCCCCCCHHHH
Confidence            1     45789999999999999999999976321100000                         0000        11


Q ss_pred             CCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccCC
Q psy4039         474 NTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGA  520 (588)
Q Consensus       474 ~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~  520 (588)
                      ...+++++.+||.+||+.||.+|||++++++         |||++..
T Consensus       281 ~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~---------hp~~~~~  318 (367)
T 2fst_X          281 FIGANPLAVDLLEKMLVLDSDKRITAAQALA---------HAYFAQY  318 (367)
T ss_dssp             TTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT---------SGGGTTT
T ss_pred             CCCCCHHHHHHHHHhCCCCcccCcCHHHHhc---------Chhhhhc
Confidence            2356889999999999999999999999999         9999844

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=100.00  E-value=3.6e-43  Score=359.08  Aligned_cols=265  Identities=23%  Similarity=0.294  Sum_probs=187.3

Q ss_pred             CccccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhc
Q psy4039         189 DVDDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVE  266 (588)
Q Consensus       189 ~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~  266 (588)
                      ..+.+..++|++.+.||+|+||.||+|.+.  ++.||||++......                .....+.+|+.+++.+ 
T Consensus         8 ~p~~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~----------------~~~~~~~~e~~~l~~l-   70 (303)
T 2vwi_A            8 LPWSINRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQ----------------TSMDELLKEIQAMSQC-   70 (303)
T ss_dssp             -----CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC--------------------------------CCCCC-
T ss_pred             cccccchhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcc----------------hhHHHHHHHHHHHhhc-
Confidence            445677799999999999999999999885  889999998432110                1223456688888776 


Q ss_pred             CCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHH-------hcCCCC
Q psy4039         267 NLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRE-------RCAQLS  338 (588)
Q Consensus       267 ~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~-------~~~~l~  338 (588)
                         +||||+++++++.+..                            ..++||||+ +++|.+++..       ....++
T Consensus        71 ---~h~~i~~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~  119 (303)
T 2vwi_A           71 ---HHPNIVSYYTSFVVKD----------------------------ELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLD  119 (303)
T ss_dssp             ---CCTTBCCEEEEEESSS----------------------------CEEEEEECCTTCBHHHHHHHHHHTTTTTTCSSC
T ss_pred             ---CCCCEeeEEEEEeecC----------------------------CcEEEehhccCCchHHHHHHHhhccccccCCCC
Confidence               8999999999988632                            389999999 6899999975       233699


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccc
Q psy4039         339 MHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMA  418 (588)
Q Consensus       339 ~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~A  418 (588)
                      +..++.++.||+.||.|||++||+||||||+|||++.+     +.+||+|||++...................||+.|+|
T Consensus       120 ~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~-----~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~a  194 (303)
T 2vwi_A          120 ESTIATILREVLEGLEYLHKNGQIHRDVKAGNILLGED-----GSVQIADFGVSAFLATGGDITRNKVRKTFVGTPCWMA  194 (303)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTT-----CCEEECCCHHHHHCC---------------CCCTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCCCCChhhEEEcCC-----CCEEEEeccchheeccCCCccchhhhcccCCCccccC
Confidence            99999999999999999999999999999999999987     7999999999987654322111111224579999999


Q ss_pred             hhHHhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccccc------------ccccCCCCCCccHHHHHHHH
Q psy4039         419 PEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE------------VNALPQLNTNVPEVMRRLVA  486 (588)
Q Consensus       419 PE~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~------------~~~~~~~~~~~~~~l~~Li~  486 (588)
                      ||++.+...     ++.++|||||||++|||++|+.||..........            ....+.....+++++.+++.
T Consensus       195 PE~~~~~~~-----~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~  269 (303)
T 2vwi_A          195 PEVMEQVRG-----YDFKADIWSFGITAIELATGAAPYHKYPPMKVLMLTLQNDPPSLETGVQDKEMLKKYGKSFRKMIS  269 (303)
T ss_dssp             HHHHHHHHC-----CCTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHHHHHHTSSCCCTTC-----CCCCCCCHHHHHHHH
T ss_pred             HHHhccccC-----CCchhhHHHHHHHHHHHHhCCCCCccCchhhHHHHHhccCCCccccccccchhhhhhhHHHHHHHH
Confidence            999875211     4578999999999999999999997632211110            01112334578899999999


Q ss_pred             HhhhhCCCCCCCHHHHHHHHhhhhhcCCccccCC
Q psy4039         487 KLLENDPSDRPSAELAATVCQLYLWAPKHWLYGA  520 (588)
Q Consensus       487 ~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~  520 (588)
                      +||+.||.+|||++++++         |||++..
T Consensus       270 ~~l~~dp~~Rps~~~ll~---------h~~~~~~  294 (303)
T 2vwi_A          270 LCLQKDPEKRPTAAELLR---------HKFFQKA  294 (303)
T ss_dssp             HHCCSSGGGSCCHHHHHT---------STTC---
T ss_pred             HHccCChhhCcCHHHHhh---------ChhhhcC
Confidence            999999999999999999         9999743

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=100.00  E-value=6e-43  Score=359.61  Aligned_cols=261  Identities=23%  Similarity=0.264  Sum_probs=210.6

Q ss_pred             CCccccccCCeEEeeeecccCceeEEEEEEC-------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHH
Q psy4039         188 PDVDDVKVDDIQIGKFIAKGTNAVVYEATFR-------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDM  260 (588)
Q Consensus       188 ~~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~  260 (588)
                      ...+++..++|.+.+.||+|+||.||+|.+.       +..||||++....   .. .            ..+.+.+|+.
T Consensus        15 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~---~~-~------------~~~~~~~E~~   78 (314)
T 2ivs_A           15 DPKWEFPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENA---SP-S------------ELRDLLSEFN   78 (314)
T ss_dssp             CTTTBCCGGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTC---CH-H------------HHHHHHHHHH
T ss_pred             CcccccchhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCC---CH-H------------HHHHHHHHHH
Confidence            4567778899999999999999999999873       4789999985321   10 0            1234567999


Q ss_pred             HHhhhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc-----
Q psy4039         261 LMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC-----  334 (588)
Q Consensus       261 il~~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~-----  334 (588)
                      +++.+    +||||+++++++.+..                            ..++||||+ +|+|.+++....     
T Consensus        79 ~l~~l----~hp~iv~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~~~~~~  126 (314)
T 2ivs_A           79 VLKQV----NHPHVIKLYGACSQDG----------------------------PLLLIVEYAKYGSLRGFLRESRKVGPG  126 (314)
T ss_dssp             HHTTC----CCTTBCCEEEEECSSS----------------------------SCEEEEECCTTCBHHHHHHHTTTSTTE
T ss_pred             HHhhC----CCCceeeEEEEEecCC----------------------------ceEEEEeecCCCCHHHHHHHHhhccCC
Confidence            99887    8999999999987632                            389999999 589999998753     


Q ss_pred             ------------------CCCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccC
Q psy4039         335 ------------------AQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNK  396 (588)
Q Consensus       335 ------------------~~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~  396 (588)
                                        ..+++.+++.++.||++||.|||++||+||||||+|||++.+     +.+||+|||+++...
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dikp~NIli~~~-----~~~kl~Dfg~~~~~~  201 (314)
T 2ivs_A          127 YLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEMKLVHRDLAARNILVAEG-----RKMKISDFGLSRDVY  201 (314)
T ss_dssp             EC----------------CEECHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETT-----TEEEECCCTTCEECT
T ss_pred             cccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHCCCcccccchheEEEcCC-----CCEEEcccccccccc
Confidence                              138999999999999999999999999999999999999987     799999999998765


Q ss_pred             CCCccccccccccccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCccccccccc---cccccCC
Q psy4039         397 SGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTDY---EVNALPQ  472 (588)
Q Consensus       397 ~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~~---~~~~~~~  472 (588)
                      ......   ......||+.|+|||++.+..      ++.++|||||||++|||++ |..||.+.......   .....+.
T Consensus       202 ~~~~~~---~~~~~~~~~~y~aPE~~~~~~------~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~  272 (314)
T 2ivs_A          202 EEDSYV---KRSQGRIPVKWMAIESLFDHI------YTTQSDVWSFGVLLWEIVTLGGNPYPGIPPERLFNLLKTGHRME  272 (314)
T ss_dssp             TTSCEE---CSSCCCSCGGGCCHHHHHHCE------ECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTCCCC
T ss_pred             ccccce---eccCCCCcccccChhhhcCCC------cCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHhhcCCcCC
Confidence            432211   112345789999999998764      4568999999999999999 99999764332221   2223345


Q ss_pred             CCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhh
Q psy4039         473 LNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYL  510 (588)
Q Consensus       473 ~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~  510 (588)
                      .+..+++++.+++.+||+.||++|||++++++.|+.++
T Consensus       273 ~~~~~~~~~~~li~~~l~~dp~~Rps~~~l~~~l~~~~  310 (314)
T 2ivs_A          273 RPDNCSEEMYRLMLQCWKQEPDKRPVFADISKDLEKMM  310 (314)
T ss_dssp             CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             CCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence            66789999999999999999999999999999888654

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=100.00  E-value=4.7e-43  Score=388.22  Aligned_cols=258  Identities=20%  Similarity=0.296  Sum_probs=209.7

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCC
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENL  268 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l  268 (588)
                      ..+..++|.+.+.||+|+||.||+|+++  |+.||||++.+..           ...   ......+.+|+.+++.+   
T Consensus       180 ~~~~~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~-----------~~~---~~~~~~~~~E~~iL~~l---  242 (543)
T 3c4z_A          180 QPMGEDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKR-----------LKK---RKGYQGAMVEKKILAKV---  242 (543)
T ss_dssp             SCCCGGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHH-----------HHH---TTCHHHHHHHHHHHHHC---
T ss_pred             ccCChhheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHH-----------hhh---hHHHHHHHHHHHHHHhc---
Confidence            3456689999999999999999999996  8999999995311           000   11234566799999987   


Q ss_pred             CCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh---cCCCCHHHHHH
Q psy4039         269 PPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER---CAQLSMHERVL  344 (588)
Q Consensus       269 ~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~---~~~l~~~~~~~  344 (588)
                       +|||||+++++|.+..                            .+|+||||+ +|+|.+++...   ...+++..++.
T Consensus       243 -~hp~Iv~l~~~~~~~~----------------------------~l~lVmE~~~gg~L~~~l~~~~~~~~~l~e~~~~~  293 (543)
T 3c4z_A          243 -HSRFIVSLAYAFETKT----------------------------DLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIF  293 (543)
T ss_dssp             -CCTTBCCEEEEEECSS----------------------------EEEEEECCCTTCBHHHHHHTSSTTSCSCCHHHHHH
T ss_pred             -CCCCEeeEEEEEeeCC----------------------------EEEEEEEeccCCCHHHHHHHhhcccccccHHHHHH
Confidence             9999999999988632                            499999999 58999999864   23699999999


Q ss_pred             HHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhc
Q psy4039         345 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALA  424 (588)
Q Consensus       345 i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~  424 (588)
                      ++.||+.||.|||++||+||||||+|||++.+     +.+||+|||+++....+...     ....+||+.|+|||++.+
T Consensus       294 ~~~qi~~aL~~LH~~gIvHrDLKP~NILl~~~-----g~vkL~DFGla~~~~~~~~~-----~~~~~GT~~Y~APE~l~~  363 (543)
T 3c4z_A          294 YTAQIVSGLEHLHQRNIIYRDLKPENVLLDDD-----GNVRISDLGLAVELKAGQTK-----TKGYAGTPGFMAPELLLG  363 (543)
T ss_dssp             HHHHHHHHHHHHHHTTEECCCCCGGGEEECTT-----SCEEECCCTTCEECCTTCCC-----BCCCCSCTTTSCHHHHTT
T ss_pred             HHHHHHHHHHHHHHcCCcccCCChHHEEEeCC-----CCEEEeecceeeeccCCCcc-----cccccCCccccChhhhcC
Confidence            99999999999999999999999999999988     89999999999876543211     124589999999999987


Q ss_pred             CCCCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccc----c--cccccCCCCCCccHHHHHHHHHhhhhCCCCCCC
Q psy4039         425 TPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD----Y--EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS  498 (588)
Q Consensus       425 ~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~----~--~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps  498 (588)
                      ..      ++.++|||||||++|||++|+.||.+......    .  .......++..+|+++++||.+||+.||.+||+
T Consensus       364 ~~------~~~~~DiwSlGvilyelltG~~PF~~~~~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~lL~~dP~~R~~  437 (543)
T 3c4z_A          364 EE------YDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRVLEQAVTYPDKFSPASKDFCEALLQKDPEKRLG  437 (543)
T ss_dssp             CC------BCTHHHHHHHHHHHHHHHHSSCSSCCTTCCCCHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHSCSSGGGSCC
T ss_pred             CC------CChHHhcCcchHHHHHHHhCCCCCCCCccchhHHHHHHHHhhcccCCCcccCHHHHHHHHHhccCCHhHCCC
Confidence            64      45789999999999999999999976422111    0  112234566789999999999999999999996


Q ss_pred             -----HHHHHHHHhhhhhcCCccccC
Q psy4039         499 -----AELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       499 -----~~e~l~~L~~~~~~~h~w~~~  519 (588)
                           ++++++         |||++.
T Consensus       438 ~~~~~a~ei~~---------Hpff~~  454 (543)
T 3c4z_A          438 FRDGSCDGLRT---------HPLFRD  454 (543)
T ss_dssp             CBTTBSHHHHT---------SGGGTT
T ss_pred             CcccCHHHHHc---------CccccC
Confidence                 478877         999974

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=100.00  E-value=1.7e-43  Score=372.04  Aligned_cols=266  Identities=20%  Similarity=0.271  Sum_probs=208.7

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCC
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENL  268 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l  268 (588)
                      .++..++|++.+.||+|+||.||+|.+.  +..||+|++....   ..             ...+.+.+|+.+++.+   
T Consensus        28 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~---~~-------------~~~~~~~~E~~~l~~l---   88 (360)
T 3eqc_A           28 GELKDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEI---KP-------------AIRNQIIRELQVLHEC---   88 (360)
T ss_dssp             CCCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCC---CH-------------HHHHHHHHHHGGGGGC---
T ss_pred             cccccccceeeeeecCCCCeEEEEEEECCCCcEEEEEEecccc---CH-------------HHHHHHHHHHHHHHHC---
Confidence            3455689999999999999999999998  8899999985421   10             0223456788898887   


Q ss_pred             CCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHH
Q psy4039         269 PPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFT  347 (588)
Q Consensus       269 ~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~  347 (588)
                       +||||+++++++.+..                            ..++||||+ +++|.+++.... .+++..+..++.
T Consensus        89 -~h~~iv~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~  138 (360)
T 3eqc_A           89 -NSPYIVGFYGAFYSDG----------------------------EISICMEHMDGGSLDQVLKKAG-RIPEQILGKVSI  138 (360)
T ss_dssp             -CCTTBCCEEEEEEETT----------------------------EEEEEECCCTTCBHHHHHHHHS-SCCHHHHHHHHH
T ss_pred             -CCCCEEEEeEEEEECC----------------------------EEEEEEECCCCCCHHHHHHHcC-CCCHHHHHHHHH
Confidence             8999999999988632                            489999999 579999998765 799999999999


Q ss_pred             HHHHHHHHHHhC-CceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCC
Q psy4039         348 QLLEGVTHLNMH-RTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP  426 (588)
Q Consensus       348 ql~~gL~yLH~~-~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~  426 (588)
                      |++.||.|||++ ||+||||||+|||++.+     +.+||+|||+++......       .....||+.|+|||++.+..
T Consensus       139 ~i~~~l~~lh~~~~i~H~dlkp~Nil~~~~-----~~~kl~Dfg~~~~~~~~~-------~~~~~gt~~y~aPE~~~~~~  206 (360)
T 3eqc_A          139 AVIKGLTYLREKHKIMHRDVKPSNILVNSR-----GEIKLCDFGVSGQLIDSM-------ANSFVGTRSYMSPERLQGTH  206 (360)
T ss_dssp             HHHHHHHHHHHHHCCCCSCCSGGGEEECTT-----CCEEECCCCCCHHHHHHC-----------CCCCTTCCHHHHTTCC
T ss_pred             HHHHHHHHHHHhCCEEcCCccHHHEEECCC-----CCEEEEECCCCccccccc-------ccCCCCCCCeECHHHHcCCC
Confidence            999999999996 99999999999999988     789999999987543211       11457999999999997654


Q ss_pred             CCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccc------------------------------------------
Q psy4039         427 GLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD------------------------------------------  464 (588)
Q Consensus       427 ~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~------------------------------------------  464 (588)
                            ++.++|||||||++|||++|+.||........                                          
T Consensus       207 ------~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (360)
T 3eqc_A          207 ------YSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLNKFGMDSRPPMAIFEL  280 (360)
T ss_dssp             ------CSHHHHHHHHHHHHHHHHHTSCCSSCCCHHHHHHHHC------------------------------CCCHHHH
T ss_pred             ------CCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcccccccCCCCCCCcccCCCcccccccCCCCcccchhh
Confidence                  45689999999999999999999965211000                                          


Q ss_pred             ---ccccccCCC-CCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccCCCCChhHHHHHHH
Q psy4039         465 ---YEVNALPQL-NTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGATPSHNEIMQWLL  532 (588)
Q Consensus       465 ---~~~~~~~~~-~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~~~~~~~~~~~l~  532 (588)
                         ......+.. ...+++++.+||.+||+.||++|||++++++         |||++.......+...|+.
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~---------hp~~~~~~~~~~~~~~~~~  343 (360)
T 3eqc_A          281 LDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMV---------HAFIKRSDAEEVDFAGWLC  343 (360)
T ss_dssp             HHHHHHSCCCCCCTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHT---------SHHHHHHHHSCCCHHHHHH
T ss_pred             hhHHhccCCCCCCcccccHHHHHHHHHHhhcChhhCCCHHHHhh---------ChHhhcchHhhhhHHHHHh
Confidence               000011111 2347889999999999999999999999999         9999844433334445553

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=100.00  E-value=4.7e-43  Score=365.22  Aligned_cols=258  Identities=24%  Similarity=0.278  Sum_probs=207.6

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEECC-------eeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHh
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATFRG-------VEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMN  263 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~~g-------~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~  263 (588)
                      .++..++|++.+.||+|+||.||+|.+.+       +.||||++....   ..             ...+.+.+|+.+++
T Consensus        42 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~---~~-------------~~~~~~~~E~~~l~  105 (343)
T 1luf_A           42 LEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEA---SA-------------DMQADFQREAALMA  105 (343)
T ss_dssp             TBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTC---CH-------------HHHHHHHHHHHHHH
T ss_pred             eEecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEecccc---CH-------------HHHHHHHHHHHHHH
Confidence            35566899999999999999999999864       789999985321   10             02235667999999


Q ss_pred             hhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc--------
Q psy4039         264 SVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC--------  334 (588)
Q Consensus       264 ~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~--------  334 (588)
                      .+    +||||+++++++.+..                            ..++||||+ +|+|.+++....        
T Consensus       106 ~l----~hp~iv~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~  153 (343)
T 1luf_A          106 EF----DNPNIVKLLGVCAVGK----------------------------PMCLLFEYMAYGDLNEFLRSMSPHTVCSLS  153 (343)
T ss_dssp             TC----CCTTBCCEEEEECSSS----------------------------SCEEEEECCTTCBHHHHHHHTCC-------
T ss_pred             hC----CCCCEEEEEEEEccCC----------------------------ceEEEEecCCCCcHHHHHHHhCcccccccc
Confidence            87    8999999999987632                            389999999 579999998742        


Q ss_pred             ---------------CCCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCC
Q psy4039         335 ---------------AQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGL  399 (588)
Q Consensus       335 ---------------~~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~  399 (588)
                                     ..+++.+++.++.||++||.|||++||+||||||+|||++.+     +.+||+|||+++......
T Consensus       154 ~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~~-----~~~kl~Dfg~~~~~~~~~  228 (343)
T 1luf_A          154 HSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLATRNCLVGEN-----MVVKIADFGLSRNIYSAD  228 (343)
T ss_dssp             ---------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGG-----GCEEECCCSCHHHHTGGG
T ss_pred             cccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCcceEEECCC-----CeEEEeecCCCcccccCc
Confidence                           479999999999999999999999999999999999999987     799999999998654321


Q ss_pred             ccccccccccccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCC
Q psy4039         400 SMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNT  475 (588)
Q Consensus       400 ~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~  475 (588)
                      ..   .......||+.|+|||++.+..      ++.++|||||||++|||++ |..||.+......   ......+..+.
T Consensus       229 ~~---~~~~~~~~t~~y~aPE~~~~~~------~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~  299 (343)
T 1luf_A          229 YY---KADGNDAIPIRWMPPESIFYNR------YTTESDVWAYGVVLWEIFSYGLQPYYGMAHEEVIYYVRDGNILACPE  299 (343)
T ss_dssp             CB---C----CCBCGGGCCHHHHHHCC------CCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCCCCCT
T ss_pred             cc---cccCCCcccceecChhhhccCC------cCcccccHHHHHHHHHHHhcCCCcCCCCChHHHHHHHhCCCcCCCCC
Confidence            11   1112456899999999998765      4578999999999999999 9999976432211   11233345667


Q ss_pred             CccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhh
Q psy4039         476 NVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYL  510 (588)
Q Consensus       476 ~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~  510 (588)
                      .+|+++.+++.+||+.||++|||++++++.|+...
T Consensus       300 ~~~~~l~~li~~~l~~~p~~Rps~~~~~~~L~~~~  334 (343)
T 1luf_A          300 NCPLELYNLMRLCWSKLPADRPSFCSIHRILQRMC  334 (343)
T ss_dssp             TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHcccCcccCCCHHHHHHHHHHHH
Confidence            89999999999999999999999999999887553

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=3.3e-43  Score=366.96  Aligned_cols=264  Identities=20%  Similarity=0.207  Sum_probs=199.5

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||+||+|.+.  +..||||++....            .........+.+.+|+.+++.+    +|||
T Consensus        26 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~------------~~~~~~~~~~~~~~E~~~l~~l----~hpn   89 (345)
T 3hko_A           26 KKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNK------------IRQINPKDVERIKTEVRLMKKL----HHPN   89 (345)
T ss_dssp             HHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHH------------HHC---CHHHHHHHHHHHHHHC----CCTT
T ss_pred             hheeecceeeecCCeEEEEEEECCCCceEEEeehhhhh------------hcccCHHHHHHHHHHHHHHHhC----CCCC
Confidence            78999999999999999999986  7899999985311            1111122335677899999998    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh-------------------
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER-------------------  333 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~-------------------  333 (588)
                      |+++++++.+..                            ..++||||+ +|+|.+++...                   
T Consensus        90 iv~~~~~~~~~~----------------------------~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~  141 (345)
T 3hko_A           90 IARLYEVYEDEQ----------------------------YICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICP  141 (345)
T ss_dssp             BCCEEEEEECSS----------------------------EEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCC
T ss_pred             cceeehhhccCC----------------------------eEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccc
Confidence            999999997632                            499999999 68999998420                   


Q ss_pred             --------------------cCCCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeecccccc
Q psy4039         334 --------------------CAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSY  393 (588)
Q Consensus       334 --------------------~~~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~  393 (588)
                                          ...+++..++.++.||+.||.|||++||+||||||+|||++.+..   ..+||+|||+++
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIll~~~~~---~~~kl~Dfg~a~  218 (345)
T 3hko_A          142 CPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSALHYLHNQGICHRDIKPENFLFSTNKS---FEIKLVDFGLSK  218 (345)
T ss_dssp             SHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESCSSS---CCEEECCCTTCE
T ss_pred             cccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHCCccccCCChhhEEEecCCC---ceEEEeeccccc
Confidence                                112467889999999999999999999999999999999986621   489999999998


Q ss_pred             ccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccccc----c-
Q psy4039         394 TNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV----N-  468 (588)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~----~-  468 (588)
                      ......... ........||+.|+|||++.+....    ++.++|||||||++|||++|+.||.+.........    . 
T Consensus       219 ~~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~----~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~  293 (345)
T 3hko_A          219 EFYKLNNGE-YYGMTTKAGTPYFVAPEVLNTTNES----YGPKCDAWSAGVLLHLLLMGAVPFPGVNDADTISQVLNKKL  293 (345)
T ss_dssp             EGGGTTCC---------CCCGGGCCHHHHTCSSSC----CCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCC
T ss_pred             cccccCccc-cccccccCCCccccCchhhccCCCC----CCcHHHHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHhccc
Confidence            653311111 1111246799999999999753322    45789999999999999999999976422211111    0 


Q ss_pred             -ccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccCC
Q psy4039         469 -ALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGA  520 (588)
Q Consensus       469 -~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~  520 (588)
                       ...+....+++++.+||.+||+.||.+|||+.++++         |||++..
T Consensus       294 ~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~---------hp~~~~~  337 (345)
T 3hko_A          294 CFENPNYNVLSPLARDLLSNLLNRNVDERFDAMRALQ---------HPWISQF  337 (345)
T ss_dssp             CTTSGGGGGSCHHHHHHHHHHSCSCTTTSCCHHHHHH---------SHHHHTT
T ss_pred             ccCCcccccCCHHHHHHHHHHcCCChhHCCCHHHHhc---------ChhhccC
Confidence             011112347899999999999999999999999999         9999743

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=100.00  E-value=9.1e-43  Score=366.60  Aligned_cols=267  Identities=23%  Similarity=0.305  Sum_probs=200.2

Q ss_pred             CCeEEeeeecccCceeEEEEEEC-CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCce
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNV  274 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~-g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNI  274 (588)
                      ++|.+.+.||+|+||.||+|.+. +..||||++...........      ........+.+.+|+.+++.+    +||||
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~------~~~~~~~~~~~~~E~~~l~~l----~h~~i   91 (362)
T 3pg1_A           22 SPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVN------ILSDSFLCKRVLREIRLLNHF----HHPNI   91 (362)
T ss_dssp             CSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEE------GGGSHHHHHHHHHHHHHHHHC----CCTTB
T ss_pred             cceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhh------hhhhhhHHHHHHHHHHHHHhC----CCcCc
Confidence            88999999999999999999886 88999999964322211000      000000124567899999998    89999


Q ss_pred             EEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy4039         275 VVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVT  354 (588)
Q Consensus       275 V~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~  354 (588)
                      +++++++....                       ......+|+||||++|+|.+++......+++..+..++.||+.||.
T Consensus        92 v~~~~~~~~~~-----------------------~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~  148 (362)
T 3pg1_A           92 LGLRDIFVHFE-----------------------EPAMHKLYLVTELMRTDLAQVIHDQRIVISPQHIQYFMYHILLGLH  148 (362)
T ss_dssp             CCCSEEEEECC-----------------------TTTCCEEEEEEECCSEEHHHHHHCTTSCCCHHHHHHHHHHHHHHHH
T ss_pred             cceeeeEEecc-----------------------CCCcceEEEEEccCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Confidence            99999987632                       1223368999999999999999877667999999999999999999


Q ss_pred             HHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCC
Q psy4039         355 HLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY  434 (588)
Q Consensus       355 yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~  434 (588)
                      |||++||+||||||+|||++.+     +.+||+|||+++.......      .....||+.|+|||++.+...     ++
T Consensus       149 ~lH~~~ivH~Dlkp~NIl~~~~-----~~~kl~Dfg~~~~~~~~~~------~~~~~~t~~y~aPE~~~~~~~-----~~  212 (362)
T 3pg1_A          149 VLHEAGVVHRDLHPGNILLADN-----NDITICDFNLAREDTADAN------KTHYVTHRWYRAPELVMQFKG-----FT  212 (362)
T ss_dssp             HHHHTTCCCCCCCGGGEEECTT-----CCEEECCTTC---------------------CGGGCCHHHHTTCTT-----CC
T ss_pred             HHHHCcCEecCCChHHEEEcCC-----CCEEEEecCcccccccccc------cceecccceecCcHHhcCCCC-----CC
Confidence            9999999999999999999987     7899999999975433211      124578999999999876321     45


Q ss_pred             CcCchhhHHHHHHHHhcCCCCCccccccccc----------------------------------cccccCCCCCCccHH
Q psy4039         435 SKSDAWTAGTVAYEIFGHDNPFYQSARNTDY----------------------------------EVNALPQLNTNVPEV  480 (588)
Q Consensus       435 ~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~  480 (588)
                      .++|||||||++|||++|+.||.+.......                                  ....+......+++.
T Consensus       213 ~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (362)
T 3pg1_A          213 KLVDMWSAGCVMAEMFNRKALFRGSTFYNQLNKIVEVVGTPKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPV  292 (362)
T ss_dssp             THHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHHHHSTTSCHH
T ss_pred             cHhHHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCChHHhhhccchhhhHHHHhhcccCChhhHHhhCCCCCHH
Confidence            7899999999999999999999763211000                                  000011123456889


Q ss_pred             HHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccCC
Q psy4039         481 MRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGA  520 (588)
Q Consensus       481 l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~  520 (588)
                      +.+||.+||+.||.+|||++++++         |||++..
T Consensus       293 ~~~li~~~L~~dP~~Rpt~~ell~---------hp~f~~~  323 (362)
T 3pg1_A          293 ALDLIAKMLEFNPQRRISTEQALR---------HPYFESL  323 (362)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHT---------SGGGTTT
T ss_pred             HHHHHHHHhcCChhhCCCHHHHHc---------Cchhhhc
Confidence            999999999999999999999999         9999854

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=100.00  E-value=9.8e-43  Score=353.22  Aligned_cols=256  Identities=21%  Similarity=0.283  Sum_probs=205.0

Q ss_pred             ccccccCCeEEeeeecccCceeEEEEEEC-----CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhh
Q psy4039         190 VDDVKVDDIQIGKFIAKGTNAVVYEATFR-----GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNS  264 (588)
Q Consensus       190 ~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-----g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~  264 (588)
                      .+.+..++|.+.+.||+|+||.||+|.+.     +..||||.+.....   .             ...+.+.+|+.+++.
T Consensus         6 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~---~-------------~~~~~~~~E~~~l~~   69 (281)
T 3cc6_A            6 QYGIAREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCT---L-------------DNKEKFMSEAVIMKN   69 (281)
T ss_dssp             CCSCCGGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSC---H-------------HHHHHHHHHHHHHHH
T ss_pred             cceecccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccC---c-------------hHHHHHHHHHHHHHh
Confidence            45677799999999999999999999875     24599999853211   0             022456779999999


Q ss_pred             hcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHH
Q psy4039         265 VENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERV  343 (588)
Q Consensus       265 l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~  343 (588)
                      +    +||||+++++++.+.                             ..++||||+ +++|.+++......+++..+.
T Consensus        70 l----~h~~i~~~~~~~~~~-----------------------------~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~  116 (281)
T 3cc6_A           70 L----DHPHIVKLIGIIEEE-----------------------------PTWIIMELYPYGELGHYLERNKNSLKVLTLV  116 (281)
T ss_dssp             H----CCTTBCCEEEEECSS-----------------------------SCEEEEECCTTCBHHHHHHHHTTTCCHHHHH
T ss_pred             C----CCCCcceEEEEEcCC-----------------------------CCEEEEecCCCCCHHHHHHhccccCCHHHHH
Confidence            8    899999999997652                             268999999 589999998876679999999


Q ss_pred             HHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHh
Q psy4039         344 LLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVAL  423 (588)
Q Consensus       344 ~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~  423 (588)
                      .++.|++.||.|||++||+||||||+|||++.+     +.+||+|||+++.........    .....||+.|+|||++.
T Consensus       117 ~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~-----~~~kl~Dfg~~~~~~~~~~~~----~~~~~~~~~y~aPE~~~  187 (281)
T 3cc6_A          117 LYSLQICKAMAYLESINCVHRDIAVRNILVASP-----ECVKLGDFGLSRYIEDEDYYK----ASVTRLPIKWMSPESIN  187 (281)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCCCSGGGEEEEET-----TEEEECCCCGGGCC-------------CCCCCGGGCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCcccCCCccceEEECCC-----CcEEeCccCCCcccccccccc----cccCCCCcceeCchhhc
Confidence            999999999999999999999999999999987     799999999998765422111    12345788999999997


Q ss_pred             cCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCH
Q psy4039         424 ATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSA  499 (588)
Q Consensus       424 ~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~  499 (588)
                      +..      ++.++|||||||++|||++ |+.||........   .........+..+++.+.+++.+||+.||++|||+
T Consensus       188 ~~~------~~~~~Di~slG~il~~llt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~  261 (281)
T 3cc6_A          188 FRR------FTTASDVWMFAVCMWEILSFGKQPFFWLENKDVIGVLEKGDRLPKPDLCPPVLYTLMTRCWDYDPSDRPRF  261 (281)
T ss_dssp             HCC------CCHHHHHHHHHHHHHHHHTTTCCTTTTSCGGGHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             cCC------CCchhccHHHHHHHHHHHhCCCCCcccCChHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHccCCchhCcCH
Confidence            665      4568999999999999998 9999975322221   12223345567789999999999999999999999


Q ss_pred             HHHHHHHhhh
Q psy4039         500 ELAATVCQLY  509 (588)
Q Consensus       500 ~e~l~~L~~~  509 (588)
                      +++++.|+..
T Consensus       262 ~ell~~L~~~  271 (281)
T 3cc6_A          262 TELVCSLSDV  271 (281)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999987754

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=100.00  E-value=2.9e-43  Score=373.41  Aligned_cols=264  Identities=19%  Similarity=0.295  Sum_probs=199.9

Q ss_pred             CCccccccCCeEEeeeecccCceeEEEEEEC-----CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHH
Q psy4039         188 PDVDDVKVDDIQIGKFIAKGTNAVVYEATFR-----GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLM  262 (588)
Q Consensus       188 ~~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-----g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il  262 (588)
                      ....++..++|++.+.||+|+||.||+|++.     +..||||++....   ..             ...+.+.+|+.++
T Consensus        37 ~~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~---~~-------------~~~~~~~~E~~~l  100 (373)
T 2qol_A           37 EFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGY---TE-------------KQRRDFLGEASIM  100 (373)
T ss_dssp             TTSCBCCGGGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTC---CH-------------HHHHHHHHHHHHH
T ss_pred             HHHhhcCHhhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCcc---CH-------------HHHHHHHHHHHHH
Confidence            4456677789999999999999999999875     6689999985321   11             0224567799999


Q ss_pred             hhhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHH
Q psy4039         263 NSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHE  341 (588)
Q Consensus       263 ~~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~  341 (588)
                      +.+    +||||+++++++.+..                            ..++||||+ +|+|.+++......+++.+
T Consensus       101 ~~l----~h~niv~~~~~~~~~~----------------------------~~~lv~e~~~~~sL~~~l~~~~~~~~~~~  148 (373)
T 2qol_A          101 GQF----DHPNIIRLEGVVTKSK----------------------------PVMIVTEYMENGSLDSFLRKHDAQFTVIQ  148 (373)
T ss_dssp             TTC----CCTTBCCEEEEECSSS----------------------------SCEEEEECCTTCBHHHHHHTTTTCSCHHH
T ss_pred             HhC----CCCCCCeEEEEEeeCC----------------------------ceEEEEeCCCCCcHHHHHHhCCCCCCHHH
Confidence            887    8999999999987632                            389999999 6899999987766899999


Q ss_pred             HHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhH
Q psy4039         342 RVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEV  421 (588)
Q Consensus       342 ~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~  421 (588)
                      ++.++.||+.||.|||++||+||||||+|||++.+     +.+||+|||+++...........  .....+|+.|+|||+
T Consensus       149 ~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~-----~~~kl~Dfg~a~~~~~~~~~~~~--~~~~~~~~~y~aPE~  221 (373)
T 2qol_A          149 LVGMLRGIASGMKYLSDMGYVHRDLAARNILINSN-----LVCKVSDFGLGRVLEDDPEAAYT--TRGGKIPIRWTSPEA  221 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTT-----CCEEECCC------------------------CTTSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCeeCCCCCcceEEEcCC-----CCEEECcCccccccccCCcccee--ccCCCcCCCccChhh
Confidence            99999999999999999999999999999999987     89999999999876543221111  112346789999999


Q ss_pred             HhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCC
Q psy4039         422 ALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRP  497 (588)
Q Consensus       422 l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rp  497 (588)
                      +.+..      ++.++|||||||++|||++ |+.||........   .......+.+..+|.++.+++.+||+.||.+||
T Consensus       222 ~~~~~------~~~~~Dv~SlG~il~ellt~g~~P~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RP  295 (373)
T 2qol_A          222 IAYRK------FTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRLPPPMDCPAALYQLMLDCWQKDRNNRP  295 (373)
T ss_dssp             HHHCC------CCHHHHHHHHHHHHHHHHTTC-CTTTTCCHHHHHHHHHTTEECCCCTTCBHHHHHHHHHHTCSSGGGSC
T ss_pred             hccCC------cCchhcHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCccccHHHHHHHHHHhCcChhhCc
Confidence            98765      4578999999999999998 9999976422211   111223345567899999999999999999999


Q ss_pred             CHHHHHHHHhhhhhc
Q psy4039         498 SAELAATVCQLYLWA  512 (588)
Q Consensus       498 s~~e~l~~L~~~~~~  512 (588)
                      +++++++.|+..+-.
T Consensus       296 s~~~i~~~L~~~~~~  310 (373)
T 2qol_A          296 KFEQIVSILDKLIRN  310 (373)
T ss_dssp             CHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHhC
Confidence            999999998877543

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=100.00  E-value=1e-42  Score=356.64  Aligned_cols=264  Identities=19%  Similarity=0.265  Sum_probs=207.3

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      .++|++++.||+|+||.||+|.+.  +..||||++.....           .  ........+.+|+.+++.+    +||
T Consensus         4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~-----------~--~~~~~~~~~~~E~~~l~~l----~h~   66 (305)
T 2wtk_C            4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKL-----------R--RIPNGEANVKKEIQLLRRL----RHK   66 (305)
T ss_dssp             -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHH-----------H--HSTTHHHHHHHHHHHHTTC----CCT
T ss_pred             ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccc-----------c--ccchhHHHHHHHHHHHHhc----CCC
Confidence            378999999999999999999986  78999999853110           0  0111234567899999887    899


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHh-cCCCCHHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRER-CAQLSMHERVLLFTQLLE  351 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~-~~~l~~~~~~~i~~ql~~  351 (588)
                      ||+++++++.+..                          ....++||||+.++|.+++... ...+++..+..++.||+.
T Consensus        67 ~i~~~~~~~~~~~--------------------------~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~  120 (305)
T 2wtk_C           67 NVIQLVDVLYNEE--------------------------KQKMYMVMEYCVCGMQEMLDSVPEKRFPVCQAHGYFCQLID  120 (305)
T ss_dssp             TBCCEEEEEECC-----------------------------CEEEEEECCSEEHHHHHHHSTTCSCCHHHHHHHHHHHHH
T ss_pred             CeeEEEEEEEcCC--------------------------CCeEEEEehhccCCHHHHHHhCcccccCHHHHHHHHHHHHH
Confidence            9999999985421                          1248999999987788888763 347999999999999999


Q ss_pred             HHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccC
Q psy4039         352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF  431 (588)
Q Consensus       352 gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~  431 (588)
                      ||.|||++||+||||||+|||++.+     +.+||+|||++..........   ......||+.|+|||++.+....   
T Consensus       121 al~~LH~~~i~H~dlkp~NIl~~~~-----~~~kl~dfg~~~~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~---  189 (305)
T 2wtk_C          121 GLEYLHSQGIVHKDIKPGNLLLTTG-----GTLKISALGVAEALHPFAADD---TCRTSQGSPAFQPPEIANGLDTF---  189 (305)
T ss_dssp             HHHHHHHTTEECSCCSGGGEEECTT-----CCEEECCCTTCEECCTTCSSC---EECCCCSCGGGCCHHHHTCCSCE---
T ss_pred             HHHHHHHCCeeecCCCcccEEEcCC-----CcEEeeccccccccCcccccc---ccccCCCCCCCcChhhccCcccC---
Confidence            9999999999999999999999987     799999999998764321111   11245699999999999764321   


Q ss_pred             CCCCcCchhhHHHHHHHHhcCCCCCcccccccccc--ccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhh
Q psy4039         432 VNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLY  509 (588)
Q Consensus       432 ~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~--~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~  509 (588)
                       .+.++|||||||++|||++|..||.+........  ......++..+++++.+++.+||+.||.+|||++++++     
T Consensus       190 -~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~-----  263 (305)
T 2wtk_C          190 -SGFKVDIWSAGVTLYNITTGLYPFEGDNIYKLFENIGKGSYAIPGDCGPPLSDLLKGMLEYEPAKRFSIRQIRQ-----  263 (305)
T ss_dssp             -ESHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHCCCCCCSSSCHHHHHHHHHHTCSSTTTSCCHHHHHH-----
T ss_pred             -CcchhhHHHHHHHHHHHHhCCCCCCCchHHHHHHHHhcCCCCCCCccCHHHHHHHHHHccCChhhCCCHHHHhc-----
Confidence             2357999999999999999999998643222111  11223456788999999999999999999999999999     


Q ss_pred             hhcCCccccCCCC
Q psy4039         510 LWAPKHWLYGATP  522 (588)
Q Consensus       510 ~~~~h~w~~~~~~  522 (588)
                          |||++...+
T Consensus       264 ----~~~~~~~~~  272 (305)
T 2wtk_C          264 ----HSWFRKKHP  272 (305)
T ss_dssp             ----SHHHHSCCC
T ss_pred             ----CcccccCCC
Confidence                999985443

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=100.00  E-value=9e-43  Score=357.79  Aligned_cols=254  Identities=25%  Similarity=0.423  Sum_probs=203.8

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|.+.+.||+|+||.||+|.+.  ++.||||++......                 ....+.+|+.+++.+    +|||
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~-----------------~~~~~~~e~~~l~~l----~h~~   67 (304)
T 2jam_A            9 KTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAF-----------------RDSSLENEIAVLKKI----KHEN   67 (304)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC-----------------------HHHHHHHHHHHC----CCTT
T ss_pred             ccceeeeeccCCCCceEEEEEECCCCCEEEEEEEeccccc-----------------chHHHHHHHHHHHhC----CCCC
Confidence            78999999999999999999986  889999999642210                 223466799999987    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++++.+..                            ..++||||+ +++|.+++...+ .+++..+..++.|++.|
T Consensus        68 i~~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~  118 (304)
T 2jam_A           68 IVTLEDIYESTT----------------------------HYYLVMQLVSGGELFDRILERG-VYTEKDASLVIQQVLSA  118 (304)
T ss_dssp             BCCEEEEEECSS----------------------------EEEEEECCCCSCBHHHHHHHHS-CCCHHHHHHHHHHHHHH
T ss_pred             eeehhhhcccCC----------------------------EEEEEEEcCCCccHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence            999999987632                            489999999 579999998765 79999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||++||+||||||+|||+..+..  .+.+||+|||+++......       .....||+.|+|||++.+..      
T Consensus       119 l~~lH~~~i~H~dikp~NIl~~~~~~--~~~~kl~Dfg~~~~~~~~~-------~~~~~~~~~y~aPE~~~~~~------  183 (304)
T 2jam_A          119 VKYLHENGIVHRDLKPENLLYLTPEE--NSKIMITDFGLSKMEQNGI-------MSTACGTPGYVAPEVLAQKP------  183 (304)
T ss_dssp             HHHHHHTTCCCCSCCGGGCEESSSST--TCCEEBCSCSTTCCCCCBT-------THHHHSCCCBCCTTTBSSCS------
T ss_pred             HHHHHHCCccccCCCHHHEEEecCCC--CCCEEEccCCcceecCCCc-------cccccCCCCccChHHhccCC------
Confidence            99999999999999999999942211  1789999999997643321       12356999999999987654      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcccccccccc------ccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHH
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE------VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVC  506 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~------~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L  506 (588)
                      ++.++|||||||++|||++|..||..........      .......+..+|+++.++|.+||+.||++|||++++++  
T Consensus       184 ~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~--  261 (304)
T 2jam_A          184 YSKAVDCWSIGVITYILLCGYPPFYEETESKLFEKIKEGYYEFESPFWDDISESAKDFICHLLEKDPNERYTCEKALS--  261 (304)
T ss_dssp             CCHHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHCCCCCCTTTTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHT--
T ss_pred             CCchhhHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCCCccccccCCHHHHHHHHHHcCCChhHCcCHHHHhc--
Confidence            4568999999999999999999997643221111      01122344678999999999999999999999999999  


Q ss_pred             hhhhhcCCccccCCCCC
Q psy4039         507 QLYLWAPKHWLYGATPS  523 (588)
Q Consensus       507 ~~~~~~~h~w~~~~~~~  523 (588)
                             |||++...+.
T Consensus       262 -------h~~~~~~~~~  271 (304)
T 2jam_A          262 -------HPWIDGNTAL  271 (304)
T ss_dssp             -------SHHHHSSCSC
T ss_pred             -------CccccCCCcc
Confidence                   9999865443

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=100.00  E-value=1.3e-42  Score=356.89  Aligned_cols=262  Identities=21%  Similarity=0.256  Sum_probs=210.5

Q ss_pred             CCccccccCCeEEeeeecccCceeEEEEEEC-------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHH
Q psy4039         188 PDVDDVKVDDIQIGKFIAKGTNAVVYEATFR-------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDM  260 (588)
Q Consensus       188 ~~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~  260 (588)
                      ...+++..++|++++.||+|+||.||+|++.       +..||||++.....   .             ...+.+.+|+.
T Consensus        15 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~---~-------------~~~~~~~~E~~   78 (313)
T 1t46_A           15 DHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAH---L-------------TEREALMSELK   78 (313)
T ss_dssp             CGGGBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCC---H-------------HHHHHHHHHHH
T ss_pred             ccccccChhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchh---H-------------HHHHHHHHHHH
Confidence            4556777799999999999999999999862       57999999953211   0             01245667999


Q ss_pred             HHhhhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcC----
Q psy4039         261 LMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCA----  335 (588)
Q Consensus       261 il~~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~----  335 (588)
                      +++.+   .+||||+++++++.+..                            ..++||||+ +|+|.+++.....    
T Consensus        79 ~l~~l---~~h~~i~~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~~~~~~  127 (313)
T 1t46_A           79 VLSYL---GNHMNIVNLLGACTIGG----------------------------PTLVITEYCCYGDLLNFLRRKRDSFIC  127 (313)
T ss_dssp             HHHHH---CCCTTBCCEEEEECSSS----------------------------SCEEEEECCTTEEHHHHHHHTTTTC--
T ss_pred             HHhhc---ccCCCeeeEEEEEecCC----------------------------CcEEEEecCCCCCHHHHHHhccccccc
Confidence            99887   58999999999987632                            379999999 5799999987532    


Q ss_pred             -------------CCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccc
Q psy4039         336 -------------QLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQ  402 (588)
Q Consensus       336 -------------~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~  402 (588)
                                   .+++.+++.++.||+.||.|||++||+||||||+|||++.+     +.+||+|||+++.........
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~-----~~~kl~Dfg~~~~~~~~~~~~  202 (313)
T 1t46_A          128 SKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHG-----RITKICDFGLARDIKNDSNYV  202 (313)
T ss_dssp             ------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEETT-----TEEEECCCGGGSCTTSCTTSE
T ss_pred             ccccccccccccccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCccceEEEcCC-----CCEEEccccccccccccccce
Confidence                         38999999999999999999999999999999999999987     899999999998765532211


Q ss_pred             cccccccccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc----ccccccCCCCCCc
Q psy4039         403 YSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD----YEVNALPQLNTNV  477 (588)
Q Consensus       403 ~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~----~~~~~~~~~~~~~  477 (588)
                      .   .....||+.|+|||++.+..      ++.++|||||||++|||++ |..||.+......    ......+..+..+
T Consensus       203 ~---~~~~~~~~~y~aPE~~~~~~------~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (313)
T 1t46_A          203 V---KGNARLPVKWMAPESIFNCV------YTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHA  273 (313)
T ss_dssp             E---CSSSEECGGGCCHHHHHHCC------CCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHHHHHHHHHTCCCCCCTTS
T ss_pred             e---ccCCCCcceeeChHHhcCCC------CChHHHHHHHHHHHHHHHhCCCCCCCcccchhHHHHHhccCCCCCCcccC
Confidence            1   12355788999999998765      4578999999999999998 9999976432211    1122233445678


Q ss_pred             cHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhh
Q psy4039         478 PEVMRRLVAKLLENDPSDRPSAELAATVCQLYL  510 (588)
Q Consensus       478 ~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~  510 (588)
                      |+++.+++.+||+.||.+|||++++++.|+..+
T Consensus       274 ~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~  306 (313)
T 1t46_A          274 PAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQI  306 (313)
T ss_dssp             CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHH
Confidence            999999999999999999999999999887554

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.1e-42  Score=362.06  Aligned_cols=264  Identities=19%  Similarity=0.207  Sum_probs=205.4

Q ss_pred             ccccCCeEEeeeecccCceeEEEEEEC--Cee----EEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhh
Q psy4039         192 DVKVDDIQIGKFIAKGTNAVVYEATFR--GVE----YALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSV  265 (588)
Q Consensus       192 ~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~----vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l  265 (588)
                      .+..++|++.+.||+|+||.||+|.+.  +..    ||+|.+......                ...+.+.+|+.+++.+
T Consensus        11 ~l~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~----------------~~~~~~~~E~~~l~~l   74 (327)
T 3lzb_A           11 ILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSP----------------KANKEILDEAYVMASV   74 (327)
T ss_dssp             ECCTTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSC----------------CCHHHHHHHHHHHTTC
T ss_pred             ccCHhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCH----------------HHHHHHHHHHHHHHhC
Confidence            345589999999999999999999986  443    577776432111                1234566799999887


Q ss_pred             cCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHH
Q psy4039         266 ENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVL  344 (588)
Q Consensus       266 ~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~  344 (588)
                          +||||+++++++.+.                             ..+++|+++ +|+|.+++......+++..++.
T Consensus        75 ----~hp~iv~~~~~~~~~-----------------------------~~~~v~~~~~~g~L~~~l~~~~~~~~~~~~~~  121 (327)
T 3lzb_A           75 ----DNPHVCRLLGICLTS-----------------------------TVQLITQLMPFGCLLDYVREHKDNIGSQYLLN  121 (327)
T ss_dssp             ----CBTTBCCCCEEEESS-----------------------------SEEEEECCCSSCBHHHHHHHTTTCCCHHHHHH
T ss_pred             ----CCCCeeEEEEEEecC-----------------------------CceEEEEecCCCcHHHHHHhcCCCCCHHHHHH
Confidence                899999999998763                             278889988 6899999998766899999999


Q ss_pred             HHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhc
Q psy4039         345 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALA  424 (588)
Q Consensus       345 i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~  424 (588)
                      ++.||+.||.|||++||+||||||+|||++.+     +.+||+|||+++.........   ......||+.|+|||++.+
T Consensus       122 i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~-----~~~kL~DfG~a~~~~~~~~~~---~~~~~~~t~~y~aPE~~~~  193 (327)
T 3lzb_A          122 WCVQIAKGMNYLEDRRLVHRDLAARNVLVKTP-----QHVKITDFGLAKLLGAEEKEY---HAEGGKVPIKWMALESILH  193 (327)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCCGGGEEEEET-----TEEEECCTTC-------------------CCCGGGSCHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCCcCCCCCHHHEEEcCC-----CCEEEccCcceeEccCccccc---cccCCCccccccCHHHHcC
Confidence            99999999999999999999999999999987     799999999998764422211   1123457889999999987


Q ss_pred             CCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHH
Q psy4039         425 TPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE  500 (588)
Q Consensus       425 ~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~  500 (588)
                      ..      ++.++|||||||++|||++ |..||.+......   .........+..+++++.+++.+||+.||.+|||++
T Consensus       194 ~~------~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~  267 (327)
T 3lzb_A          194 RI------YTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPICTIDVYMIMRKCWMIDADSRPKFR  267 (327)
T ss_dssp             CC------CCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             CC------CChHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHcCCChhHCcCHH
Confidence            65      4568999999999999999 9999976432221   122333455678999999999999999999999999


Q ss_pred             HHHHHHhhhhhcCCcccc
Q psy4039         501 LAATVCQLYLWAPKHWLY  518 (588)
Q Consensus       501 e~l~~L~~~~~~~h~w~~  518 (588)
                      ++++.|+.+...+..|+.
T Consensus       268 ell~~L~~~~~~~~~~~~  285 (327)
T 3lzb_A          268 ELIIEFSKMARDPQRYLV  285 (327)
T ss_dssp             HHHHHHHHHHTSHHHHBC
T ss_pred             HHHHHHHHHHhCcCceEE
Confidence            999999988776655554

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=100.00  E-value=2.6e-42  Score=350.90  Aligned_cols=260  Identities=21%  Similarity=0.279  Sum_probs=206.8

Q ss_pred             ccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCC
Q psy4039         192 DVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLP  269 (588)
Q Consensus       192 ~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~  269 (588)
                      .+..++|++.+.||+|+||.||+|.+.  ++.||||++..........          .....+.+.+|+.+++.+    
T Consensus        15 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~----------~~~~~~~~~~E~~~l~~l----   80 (287)
T 4f0f_A           15 TLADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETE----------MIEKFQEFQREVFIMSNL----   80 (287)
T ss_dssp             BCCSTTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHH----------HHCCSHHHHHHHHHHTTC----
T ss_pred             hhhhccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchh----------HHHHHHHHHHHHHHHHhC----
Confidence            355589999999999999999999996  8899999986533222210          001224567899999987    


Q ss_pred             CCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHH
Q psy4039         270 PHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQ  348 (588)
Q Consensus       270 ~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~q  348 (588)
                      +||||+++++++.+.                              .++||||+ +|+|.+++......+++..++.++.|
T Consensus        81 ~h~~i~~~~~~~~~~------------------------------~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~  130 (287)
T 4f0f_A           81 NHPNIVKLYGLMHNP------------------------------PRMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLD  130 (287)
T ss_dssp             CCTTBCCEEEEETTT------------------------------TEEEEECCTTCBHHHHHHCTTSCCCHHHHHHHHHH
T ss_pred             CCCCchhhheeecCC------------------------------CeEEEEecCCCCHHHHHhcccCCccHHHHHHHHHH
Confidence            899999999998652                              36899999 58999999877668999999999999


Q ss_pred             HHHHHHHHHhCC--ceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCC
Q psy4039         349 LLEGVTHLNMHR--TAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP  426 (588)
Q Consensus       349 l~~gL~yLH~~~--IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~  426 (588)
                      ++.||.|||++|  |+||||||+|||++.+..+....+||+|||+++.....        .....||+.|+|||++.+..
T Consensus       131 l~~~l~~lH~~~~~ivH~dikp~Nil~~~~~~~~~~~~kl~Dfg~~~~~~~~--------~~~~~g~~~y~aPE~~~~~~  202 (287)
T 4f0f_A          131 IALGIEYMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQQSVHS--------VSGLLGNFQWMAPETIGAEE  202 (287)
T ss_dssp             HHHHHHHHHTSSSCCBCSCCSGGGEEESCCCTTCSCCEEECCCTTCBCCSSC--------EECCCCCCTTSCGGGSSCSS
T ss_pred             HHHHHHHHHhCCCCeecCCCCcceEEEeccCCCCceeEEeCCCCcccccccc--------ccccCCCccccCchhhccCC
Confidence            999999999999  99999999999998774333345999999999754331        12457999999999985433


Q ss_pred             CCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccc------ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHH
Q psy4039         427 GLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD------YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE  500 (588)
Q Consensus       427 ~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~------~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~  500 (588)
                      ..    ++.++|||||||++|||++|+.||........      ......+..+..+|+++.+++.+||+.||.+|||++
T Consensus       203 ~~----~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~  278 (287)
T 4f0f_A          203 ES----YTEKADTYSFAMILYTILTGEGPFDEYSYGKIKFINMIREEGLRPTIPEDCPPRLRNVIELCWSGDPKKRPHFS  278 (287)
T ss_dssp             CE----ECHHHHHHHHHHHHHHHHHSSCTTTTCCCCHHHHHHHHHHSCCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             CC----cCchhhHHHHHHHHHHHHcCCCCCccccccHHHHHHHHhccCCCCCCCcccCHHHHHHHHHHhcCChhhCcCHH
Confidence            22    34679999999999999999999976422111      122334556778999999999999999999999999


Q ss_pred             HHHHHHh
Q psy4039         501 LAATVCQ  507 (588)
Q Consensus       501 e~l~~L~  507 (588)
                      ++++.|+
T Consensus       279 ~ll~~L~  285 (287)
T 4f0f_A          279 YIVKELS  285 (287)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998776

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=100.00  E-value=9.3e-43  Score=368.88  Aligned_cols=260  Identities=21%  Similarity=0.235  Sum_probs=201.0

Q ss_pred             CccccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhc
Q psy4039         189 DVDDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVE  266 (588)
Q Consensus       189 ~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~  266 (588)
                      ..+++. ++|.+.+.||+|+||.||+|.+.  ++.||||++......   ..            ....+.+|+.+++.+ 
T Consensus        36 ~~~~l~-~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~---~~------------~~~~~~~E~~~l~~l-   98 (371)
T 4exu_A           36 TAWELP-KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQS---EI------------FAKRAYRELLLLKHM-   98 (371)
T ss_dssp             EEEEEE-TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSS---HH------------HHHHHHHHHHHHHHC-
T ss_pred             ceeccc-ccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccc---hh------------HHHHHHHHHHHHHhc-
Confidence            444555 89999999999999999999987  899999999532211   11            123456789999987 


Q ss_pred             CCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHH
Q psy4039         267 NLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLF  346 (588)
Q Consensus       267 ~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~  346 (588)
                         +||||+++++++.+...                      .......++||||++++|.+++..   .+++..+..++
T Consensus        99 ---~h~niv~~~~~~~~~~~----------------------~~~~~~~~lv~e~~~~~l~~~~~~---~~~~~~~~~i~  150 (371)
T 4exu_A           99 ---QHENVIGLLDVFTPASS----------------------LRNFYDFYLVMPFMQTDLQKIMGM---EFSEEKIQYLV  150 (371)
T ss_dssp             ---CCTTBCCCSEEECSCSS----------------------STTCCCCEEEEECCCEEHHHHTTS---CCCHHHHHHHH
T ss_pred             ---CCCCchhhhhheeccCC----------------------cccceeEEEEEccccccHHHHhhc---CCCHHHHHHHH
Confidence               89999999999976431                      111123699999999999888732   69999999999


Q ss_pred             HHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCC
Q psy4039         347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP  426 (588)
Q Consensus       347 ~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~  426 (588)
                      .||+.||.|||++||+||||||+|||++.+     +.+||+|||+++......        ....||+.|+|||++.+..
T Consensus       151 ~qi~~aL~~LH~~~ivH~Dikp~NIll~~~-----~~~kL~Dfg~a~~~~~~~--------~~~~~t~~y~aPE~~~~~~  217 (371)
T 4exu_A          151 YQMLKGLKYIHSAGVVHRDLKPGNLAVNED-----CELKILDFGLARHADAEM--------TGYVVTRWYRAPEVILSWM  217 (371)
T ss_dssp             HHHHHHHHHHHHTTCCCSCCCGGGEEECTT-----CCEEECSTTCC----------------CTTCCCTTSCHHHHSCCS
T ss_pred             HHHHHHHHHHHHCCCcCCCcCHHHeEECCC-----CCEEEEecCcccccccCc--------CCcccCccccCHHHhcCCC
Confidence            999999999999999999999999999988     899999999997654321        2457899999999997632


Q ss_pred             CCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccccc---------------------------------ccccCCC
Q psy4039         427 GLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE---------------------------------VNALPQL  473 (588)
Q Consensus       427 ~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~---------------------------------~~~~~~~  473 (588)
                      .     ++.++|||||||++|||++|+.||.+........                                 .......
T Consensus       218 ~-----~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (371)
T 4exu_A          218 H-----YNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQL  292 (371)
T ss_dssp             C-----CCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHTTCSCHHHHHHHHHSCCCCCCCHHHH
T ss_pred             C-----CCcHHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCcHHHHHHhhhhhhhhhhhccCCCcchhHHHh
Confidence            1     4578999999999999999999997632110000                                 0000112


Q ss_pred             CCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccCC
Q psy4039         474 NTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGA  520 (588)
Q Consensus       474 ~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~  520 (588)
                      +..+++++.+||.+||+.||++|||++++++         |||++..
T Consensus       293 ~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~---------hp~f~~~  330 (371)
T 4exu_A          293 FPRASPQAADLLEKMLELDVDKRLTAAQALT---------HPFFEPF  330 (371)
T ss_dssp             STTSCHHHHHHHHHHSCSCTTTSCCHHHHHT---------SGGGTTT
T ss_pred             ccccChHHHHHHHHHCCCChhhcCCHHHHhc---------CcccccC
Confidence            3467899999999999999999999999999         9999843

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=100.00  E-value=2.4e-42  Score=357.24  Aligned_cols=260  Identities=18%  Similarity=0.235  Sum_probs=197.3

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      -++|.+.+.||+|+||+||+|.+.  ++.||||++......                ...+.+.+|+.+++.+    +||
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~----------------~~~~~~~~E~~~l~~l----~h~   67 (319)
T 4euu_A            8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFL----------------RPVDVQMREFEVLKKL----NHK   67 (319)
T ss_dssp             SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGG----------------SCHHHHHHHHHHHHHC----CCT
T ss_pred             CCCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEecccccc----------------chHHHHHHHHHHHHhc----CCC
Confidence            378999999999999999999998  889999998532211                1223456799999998    899


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc--CCCCHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC--AQLSMHERVLLFTQL  349 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~--~~l~~~~~~~i~~ql  349 (588)
                      ||+++++++.+..                          ....++||||+ +++|.+++....  ..+++.+++.++.||
T Consensus        68 ~iv~~~~~~~~~~--------------------------~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi  121 (319)
T 4euu_A           68 NIVKLFAIEEETT--------------------------TRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDV  121 (319)
T ss_dssp             TBCCEEEEEECTT--------------------------TCCEEEEEECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHH
T ss_pred             CcceEEEEeecCC--------------------------CceEEEEEeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHH
Confidence            9999999987632                          12489999999 589999998653  239999999999999


Q ss_pred             HHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCC--
Q psy4039         350 LEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG--  427 (588)
Q Consensus       350 ~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~--  427 (588)
                      +.||.|||++||+||||||+|||+..+.+.. +.+||+|||+++........      ....||+.|+|||++.....  
T Consensus       122 ~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~-~~~kL~Dfg~a~~~~~~~~~------~~~~gt~~y~aPE~~~~~~~~~  194 (319)
T 4euu_A          122 VGGMNHLRENGIVHRNIKPGNIMRVIGEDGQ-SVYKLTDFGAARELEDDEQF------VSLYGTEEYLHPDMYERAVLRK  194 (319)
T ss_dssp             HHHHHHHHHTTEECSCCSGGGEEEEECTTSC-EEEEECCCTTCEECCTTCCB------CCCCSCGGGCCHHHHHHHTSCC
T ss_pred             HHHHHHHHHCCEecCCCCHHHEEEeccCCCC-ceEEEccCCCceecCCCCce------eecccCCCccCHHHhhhccccc
Confidence            9999999999999999999999982221111 68999999999876543221      14569999999999863210  


Q ss_pred             CccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccc---------------------------c----cccccCCCCCC
Q psy4039         428 LFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD---------------------------Y----EVNALPQLNTN  476 (588)
Q Consensus       428 ~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~---------------------------~----~~~~~~~~~~~  476 (588)
                      .....++.++|||||||++|||++|+.||........                           +    .......++..
T Consensus       195 ~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (319)
T 4euu_A          195 DHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRG  274 (319)
T ss_dssp             CCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGGCHHHHHHHHHHCCTTCCEEEECSTTCCEEEESSCCTTCSSCHH
T ss_pred             cccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccchhHHHHHHHhcCCCcccchhhhcccCCccccCccCCcccccchh
Confidence            0011245789999999999999999999964211000                           0    00000122334


Q ss_pred             ccHHHHHHHHHhhhhCCCCCCCHHHHHHHHh
Q psy4039         477 VPEVMRRLVAKLLENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       477 ~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~  507 (588)
                      +++.+.+++.+||+.||++|||++|+++.+.
T Consensus       275 ~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~  305 (319)
T 4euu_A          275 LQVLLTPVLANILEADQEKCWGFDQFFAETS  305 (319)
T ss_dssp             HHHHHHHHHHHHSCCCTTTSCCHHHHHHHHH
T ss_pred             HHHHhHHHHHHhccCChhhhccHHHhhhccH
Confidence            5678999999999999999999999999555

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=100.00  E-value=2.1e-42  Score=362.96  Aligned_cols=259  Identities=19%  Similarity=0.243  Sum_probs=191.5

Q ss_pred             cccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCC
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPP  270 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~  270 (588)
                      ..+++|++.+.||+|+||.||+|.+.  +..||||++.....                  ......+|+..+..+    +
T Consensus        20 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~------------------~~~~~~~~~~~l~~l----~   77 (360)
T 3e3p_A           20 KEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPR------------------FRNRELQIMQDLAVL----H   77 (360)
T ss_dssp             HHHTTEEEC----------CEEEEETTTCCEEEEEEEECCTT------------------CCCHHHHHHHHHHHH----C
T ss_pred             hhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCcc------------------ccHHHHHHHHHHHhc----C
Confidence            44589999999999999999999997  88999999853221                  122234456666666    8


Q ss_pred             CCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHH---hcCCCCHHHHHHHHH
Q psy4039         271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRE---RCAQLSMHERVLLFT  347 (588)
Q Consensus       271 HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~---~~~~l~~~~~~~i~~  347 (588)
                      ||||++++++|.+...                     .......+++||||++++|...+..   ....+++..+..++.
T Consensus        78 h~niv~~~~~~~~~~~---------------------~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  136 (360)
T 3e3p_A           78 HPNIVQLQSYFYTLGE---------------------RDRRDIYLNVVMEYVPDTLHRCCRNYYRRQVAPPPILIKVFLF  136 (360)
T ss_dssp             CTTBCCEEEEEEEECS---------------------SCTTCEEEEEEEECCSCBHHHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred             CCCcccHHHhhhcccc---------------------ccccceeEEEEeecccccHHHHHHHHhhcccCCCHHHHHHHHH
Confidence            9999999999976421                     1122335889999998888777664   344789999999999


Q ss_pred             HHHHHHHHHH--hCCceeccCCCCcEEEcC-CCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhc
Q psy4039         348 QLLEGVTHLN--MHRTAHRDLKSDNILLDC-SEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALA  424 (588)
Q Consensus       348 ql~~gL~yLH--~~~IvHrDLKp~NILld~-~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~  424 (588)
                      |++.||.|||  ++||+||||||+|||++. +     +.+||+|||+++.......      .....||+.|+|||++.+
T Consensus       137 qi~~al~~lH~~~~~ivH~Dlkp~NIll~~~~-----~~~kl~Dfg~a~~~~~~~~------~~~~~gt~~y~aPE~~~~  205 (360)
T 3e3p_A          137 QLIRSIGCLHLPSVNVCHRDIKPHNVLVNEAD-----GTLKLCDFGSAKKLSPSEP------NVAYICSRYYRAPELIFG  205 (360)
T ss_dssp             HHHHHHHHHTSTTTCCBCSCCCGGGEEEETTT-----TEEEECCCTTCBCCCTTSC------CCSTTSCGGGCCHHHHTT
T ss_pred             HHHHHHHHHhCCCCCeecCcCCHHHEEEeCCC-----CcEEEeeCCCceecCCCCC------cccccCCcceeCHHHHcC
Confidence            9999999999  999999999999999986 5     7999999999987654221      124568999999999865


Q ss_pred             CCCCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccccc----------------------------------cccc
Q psy4039         425 TPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE----------------------------------VNAL  470 (588)
Q Consensus       425 ~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~----------------------------------~~~~  470 (588)
                      ...     ++.++|||||||++|||++|+.||.+........                                  ....
T Consensus       206 ~~~-----~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (360)
T 3e3p_A          206 NQH-----YTTAVDIWSVGCIFAEMMLGEPIFRGDNSAGQLHEIVRVLGCPSREVLRKLNPSHTDVDLYNSKGIPWSNVF  280 (360)
T ss_dssp             CSS-----CCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCTTCCCGGGGCCCCCCHHHHT
T ss_pred             CCC-----CCcHHHHHHHHHHHHHHHhCCCCcCCCChHHHHHHHHHHcCCCCHHHHHhcccchhhccccccccCCccccc
Confidence            431     4578999999999999999999997632111000                                  0011


Q ss_pred             CCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccC
Q psy4039         471 PQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       471 ~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~  519 (588)
                      +.....+++++.+||.+||+.||.+|||++++++         |||++.
T Consensus       281 ~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~---------hp~f~~  320 (360)
T 3e3p_A          281 SDHSLKDAKEAYDLLSALLQYLPEERMKPYEALC---------HPYFDE  320 (360)
T ss_dssp             TTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTT---------SGGGGG
T ss_pred             chhhccccHHHHHHHHHHhccCccccCCHHHHhc---------Cccccc
Confidence            2223346789999999999999999999999998         999983

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=2e-42  Score=347.37  Aligned_cols=256  Identities=17%  Similarity=0.188  Sum_probs=208.2

Q ss_pred             ccccccCCeEEeeeecccCceeEEEEEEC-CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCC
Q psy4039         190 VDDVKVDDIQIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENL  268 (588)
Q Consensus       190 ~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l  268 (588)
                      .|.++.++|++.+.||+|+||.||+|.+. +..||||++.....                  ..+.+.+|+.+++.+   
T Consensus         2 ~~~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~------------------~~~~~~~e~~~l~~l---   60 (267)
T 3t9t_A            2 KWVIDPSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM------------------SEEDFIEEAEVMMKL---   60 (267)
T ss_dssp             -CBCCGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTB------------------CHHHHHHHHHHHHTC---
T ss_pred             ceEEchhheeeeeEecCCCceeEEEEEecCCCeEEEEEccccCC------------------CHHHHHHHHHHHHhC---
Confidence            35677799999999999999999999996 77899999954221                  123466799999887   


Q ss_pred             CCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHH
Q psy4039         269 PPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFT  347 (588)
Q Consensus       269 ~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~  347 (588)
                       +||||+++++++.+..                            ..++||||+ +++|.+++......+++..++.++.
T Consensus        61 -~h~~i~~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~  111 (267)
T 3t9t_A           61 -SHPKLVQLYGVCLEQA----------------------------PICLVTEFMEHGCLSDYLRTQRGLFAAETLLGMCL  111 (267)
T ss_dssp             -CCTTBCCEEEEECSSS----------------------------SCEEEECCCTTCBHHHHHHHTTTCCCHHHHHHHHH
T ss_pred             -CCCCEeeEEEEEccCC----------------------------CeEEEEeCCCCCcHHHHHhhCcccCCHHHHHHHHH
Confidence             8999999999987632                            389999999 5799999988755799999999999


Q ss_pred             HHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCC
Q psy4039         348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG  427 (588)
Q Consensus       348 ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~  427 (588)
                      |++.||.|||++||+||||||+||+++.+     +.+||+|||+++........    ......||+.|+|||++.+.. 
T Consensus       112 ~i~~~l~~lH~~~i~H~dl~p~Nili~~~-----~~~kl~dfg~~~~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~-  181 (267)
T 3t9t_A          112 DVCEGMAYLEEACVIHRDLAARNCLVGEN-----QVIKVSDFGMTRFVLDDQYT----SSTGTKFPVKWASPEVFSFSR-  181 (267)
T ss_dssp             HHHHHHHHHHHTTCCCSSCCGGGEEECGG-----GCEEECCTTGGGGBCCHHHH----STTSTTCCGGGCCHHHHHHCC-
T ss_pred             HHHHHHHHHHhCCcccCCCchheEEECCC-----CCEEEccccccccccccccc----ccccccccccccChhhhcCCC-
Confidence            99999999999999999999999999887     78999999999875432111    111345788999999998765 


Q ss_pred             CccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHH
Q psy4039         428 LFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAA  503 (588)
Q Consensus       428 ~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l  503 (588)
                           ++.++||||||+++|||++ |..||........   ......+..+..+++++.+++.+||+.||++|||+++++
T Consensus       182 -----~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll  256 (267)
T 3t9t_A          182 -----YSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRLASTHVYQIMNHCWRERPEDRPAFSRLL  256 (267)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred             -----ccchhchhhhHHHHHHHhccCCCCCCCCCHHHHHHHHhcCCcCCCCccCcHHHHHHHHHHccCChhhCcCHHHHH
Confidence                 4568999999999999999 8999976422211   111223345567899999999999999999999999999


Q ss_pred             HHHhhhh
Q psy4039         504 TVCQLYL  510 (588)
Q Consensus       504 ~~L~~~~  510 (588)
                      +.|+...
T Consensus       257 ~~L~~l~  263 (267)
T 3t9t_A          257 RQLAEIA  263 (267)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9887553

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=100.00  E-value=1.9e-42  Score=353.37  Aligned_cols=254  Identities=23%  Similarity=0.305  Sum_probs=207.2

Q ss_pred             ccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCC
Q psy4039         194 KVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPH  271 (588)
Q Consensus       194 ~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~H  271 (588)
                      ..++|.+.+.||+|+||.||+|.+.  ++.||+|++........              ...+.+.+|+.+++.+    +|
T Consensus        13 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~--------------~~~~~~~~e~~~l~~l----~h   74 (294)
T 2rku_A           13 SRRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKP--------------HQREKMSMEISIHRSL----AH   74 (294)
T ss_dssp             TTEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSH--------------HHHHHHHHHHHHHHTC----CC
T ss_pred             cccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCH--------------HHHHHHHHHHHHHHhC----CC
Confidence            4478999999999999999999997  78999999864321111              1223456789999887    99


Q ss_pred             CceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy4039         272 PNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLL  350 (588)
Q Consensus       272 pNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~  350 (588)
                      |||+++++++.+..                            ..++||||+ +++|.+++.... .+++.++..++.|++
T Consensus        75 ~~iv~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~i~~qi~  125 (294)
T 2rku_A           75 QHVVGFHGFFEDND----------------------------FVFVVLELCRRRSLLELHKRRK-ALTEPEARYYLRQIV  125 (294)
T ss_dssp             TTBCCEEEEEECSS----------------------------EEEEEEECCTTCBHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred             CCEeeeeeeeccCC----------------------------EEEEEEecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence            99999999987632                            489999999 479999987764 899999999999999


Q ss_pred             HHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCcc
Q psy4039         351 EGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFS  430 (588)
Q Consensus       351 ~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~  430 (588)
                      +||.|||++||+||||||+|||++.+     +.+||+|||+++........     .....||+.|+|||++.+..    
T Consensus       126 ~~l~~lH~~~i~H~dl~p~Nil~~~~-----~~~kl~dfg~~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~----  191 (294)
T 2rku_A          126 LGCQYLHRNRVIHRDLKLGNLFLNED-----LEVKIGDFGLATKVEYDGER-----KKVLCGTPNYIAPEVLSKKG----  191 (294)
T ss_dssp             HHHHHHHHTTEECCCCCGGGEEECTT-----CCEEECCCTTCEECCSTTCC-----BCCCCSCCSSCCHHHHTTSC----
T ss_pred             HHHHHHHHCCccccCCChHhEEEcCC-----CCEEEEeccCceecccCccc-----cccccCCCCcCCcchhccCC----
Confidence            99999999999999999999999987     79999999999876432111     12456999999999997654    


Q ss_pred             CCCCCcCchhhHHHHHHHHhcCCCCCcccccccccc--ccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhh
Q psy4039         431 FVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQL  508 (588)
Q Consensus       431 ~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~--~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~  508 (588)
                        ++.++||||||+++|||++|+.||..........  ......++..+++.+.+++.+||+.||++|||++++++    
T Consensus       192 --~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~----  265 (294)
T 2rku_A          192 --HSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKNEYSIPKHINPVAASLIQKMLQTDPTARPTINELLN----  265 (294)
T ss_dssp             --BCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTTCCCCCTTSCHHHHHHHHHHTCSSGGGSCCGGGGGG----
T ss_pred             --CCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhhccCCCccccCHHHHHHHHHHcccChhhCcCHHHHhh----
Confidence              4568999999999999999999997643222111  11223456788999999999999999999999999988    


Q ss_pred             hhhcCCccccC
Q psy4039         509 YLWAPKHWLYG  519 (588)
Q Consensus       509 ~~~~~h~w~~~  519 (588)
                           |||+..
T Consensus       266 -----~~~~~~  271 (294)
T 2rku_A          266 -----DEFFTS  271 (294)
T ss_dssp             -----SHHHHT
T ss_pred             -----Chheec
Confidence                 999973

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=100.00  E-value=9.7e-43  Score=355.21  Aligned_cols=262  Identities=24%  Similarity=0.301  Sum_probs=194.2

Q ss_pred             CCccccccCCeEEeeeecccCceeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcC
Q psy4039         188 PDVDDVKVDDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVEN  267 (588)
Q Consensus       188 ~~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~  267 (588)
                      ...+++.-++|++.+.||+|+||.||+|.+.+ .||||++......   ..            ..+.+.+|+.+++.+  
T Consensus        16 ~~~~ei~~~~y~~~~~lG~G~~g~Vy~~~~~~-~vavK~~~~~~~~---~~------------~~~~~~~E~~~l~~l--   77 (289)
T 3og7_A           16 ADDWEIPDGQITVGQRIGSGSFGTVYKGKWHG-DVAVKMLNVTAPT---PQ------------QLQAFKNEVGVLRKT--   77 (289)
T ss_dssp             --CCBCCTTSCEEEEEEEECSSEEEEEEESSS-EEEEEEESCSSCC---HH------------HHHHHHHHHHHHTTC--
T ss_pred             CCCCccCccceeeeeEecCCCCeEEEEEEEcC-ceEEEEEeccCCC---HH------------HHHHHHHHHHHHHhC--
Confidence            45678888999999999999999999999865 5999998542211   11            123456789999887  


Q ss_pred             CCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHH
Q psy4039         268 LPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLF  346 (588)
Q Consensus       268 l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~  346 (588)
                        +||||+++++++.+.                             ..++||||+ +++|.+++......+++..++.++
T Consensus        78 --~h~~iv~~~~~~~~~-----------------------------~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~  126 (289)
T 3og7_A           78 --RHVNILLFMGYSTAP-----------------------------QLAIVTQWCEGSSLYHHLHASETKFEMKKLIDIA  126 (289)
T ss_dssp             --CCTTBCCEEEEECSS-----------------------------SCEEEEECCCEEEHHHHHTTC---CCHHHHHHHH
T ss_pred             --CCCcEEEEEeeccCC-----------------------------ccEEEEEecCCCcHHHHHhhccCCCCHHHHHHHH
Confidence              899999999875432                             278999999 589999997665589999999999


Q ss_pred             HHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCC
Q psy4039         347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP  426 (588)
Q Consensus       347 ~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~  426 (588)
                      .|++.||.|||++||+||||||+|||++.+     +.+||+|||+++........   .......||+.|+|||++....
T Consensus       127 ~qi~~~L~~lH~~~i~H~Dlkp~Nil~~~~-----~~~kl~Dfg~~~~~~~~~~~---~~~~~~~gt~~y~aPE~~~~~~  198 (289)
T 3og7_A          127 RQTARGMDYLHAKSIIHRDLKSNNIFLHED-----NTVKIGDFGLATEKSRWSGS---HQFEQLSGSILWMAPEVIRMQD  198 (289)
T ss_dssp             HHHHHHHHHHHHTTCCCSCCCGGGEEEETT-----TEEEECCCC---------------------CCCTTCCHHHHC---
T ss_pred             HHHHHHHHHHHhCCcccccCccceEEECCC-----CCEEEccceecccccccccc---ccccccCCCccccCchhhcccC
Confidence            999999999999999999999999999988     79999999999765431111   1112457999999999996332


Q ss_pred             CCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccc--------cccccCCCCCCccHHHHHHHHHhhhhCCCCCCC
Q psy4039         427 GLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY--------EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS  498 (588)
Q Consensus       427 ~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~--------~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps  498 (588)
                      ..   .++.++|||||||++|||++|+.||.+.......        ...........+|+++.+++.+||+.||.+|||
T Consensus       199 ~~---~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps  275 (289)
T 3og7_A          199 SN---PYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIEMVGRGSLSPDLSKVRSNCPKRMKRLMAECLKKKRDERPS  275 (289)
T ss_dssp             -C---CSCHHHHHHHHHHHHHHHHHSSCTTSSCCCHHHHHHHHHHTSCCCCTTSSCTTSCHHHHHHHHHHTCSSGGGSCC
T ss_pred             CC---CCCcccchHHHHHHHHHHHHCCCCccccchHHHHHHHhcccccCcchhhccccCCHHHHHHHHHHccCChhhCCC
Confidence            11   1345799999999999999999999763221111        111222344678999999999999999999999


Q ss_pred             HHHHHHHHhhh
Q psy4039         499 AELAATVCQLY  509 (588)
Q Consensus       499 ~~e~l~~L~~~  509 (588)
                      ++++++.|+.+
T Consensus       276 ~~ell~~L~~l  286 (289)
T 3og7_A          276 FPRILAEIEEL  286 (289)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHH
Confidence            99999988754

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=100.00  E-value=9.1e-43  Score=360.77  Aligned_cols=260  Identities=22%  Similarity=0.207  Sum_probs=204.3

Q ss_pred             ccCCeEEeeeecccCceeEEEEEEC-CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         194 KVDDIQIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       194 ~~~~~~~~~~IG~G~fG~Vy~a~~~-g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      ..++|++.+.||+|+||.||+|.+. ++.||||++......                 ..+.+.+|+.+++.+    +||
T Consensus        37 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~-----------------~~~~~~~E~~~l~~l----~h~   95 (321)
T 2qkw_B           37 ATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQ-----------------GIEEFETEIETLSFC----RHP   95 (321)
T ss_dssp             CCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSS-----------------HHHHHHHHHHGGGSC----CCT
T ss_pred             HHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChH-----------------HHHHHHHHHHHHHhC----CCC
Confidence            3488999999999999999999987 789999997532110                 123456788898887    899


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc---CCCCHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC---AQLSMHERVLLFTQ  348 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~---~~l~~~~~~~i~~q  348 (588)
                      ||+++++++.+..                            ..++||||+ +|+|.+++....   ..+++.+++.++.|
T Consensus        96 ~iv~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~  147 (321)
T 2qkw_B           96 HLVSLIGFCDERN----------------------------EMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIG  147 (321)
T ss_dssp             TBCCEEEECCCTT----------------------------CCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHH
T ss_pred             CEeeEEEEEcCCC----------------------------eEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHH
Confidence            9999999987532                            389999999 579999987542   35899999999999


Q ss_pred             HHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCC
Q psy4039         349 LLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGL  428 (588)
Q Consensus       349 l~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~  428 (588)
                      ++.||.|||++||+||||||+|||++.+     +.+||+|||+++........   .......||+.|+|||++.+..  
T Consensus       148 i~~~l~~lH~~~ivH~dlkp~Nil~~~~-----~~~kl~Dfg~~~~~~~~~~~---~~~~~~~gt~~y~aPE~~~~~~--  217 (321)
T 2qkw_B          148 AARGLHYLHTRAIIHRDVKSINILLDEN-----FVPKITDFGISKKGTELDQT---HLSTVVKGTLGYIDPEYFIKGR--  217 (321)
T ss_dssp             HHHHHHHHHHTTEECSCCCSTTEEECTT-----CCEEECCCTTCEECSSSSCC---CCBCCCEEETTTCCHHHHHHCB--
T ss_pred             HHHHHHHhcCCCeecCCCCHHHEEECCC-----CCEEEeeccccccccccccc---ccccccCCCccccCHHHhcCCC--
Confidence            9999999999999999999999999987     89999999999865432111   1112456899999999998765  


Q ss_pred             ccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccc---------------ccc----ccCCCCCCccHHHHHHHHHhh
Q psy4039         429 FSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY---------------EVN----ALPQLNTNVPEVMRRLVAKLL  489 (588)
Q Consensus       429 ~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~---------------~~~----~~~~~~~~~~~~l~~Li~~~L  489 (588)
                          ++.++|||||||++|||++|+.||.........               ...    .....+..++..+.+++.+||
T Consensus       218 ----~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l  293 (321)
T 2qkw_B          218 ----LTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCL  293 (321)
T ss_dssp             ----CCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHTTTCCCSSSSSSCTTCSCHHHHHHHHHHHHHHT
T ss_pred             ----CCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhccccccHHHhcChhhccccCHHHHHHHHHHHHHHc
Confidence                457899999999999999999999764221111               000    111223345678999999999


Q ss_pred             hhCCCCCCCHHHHHHHHhhhhhcCCcc
Q psy4039         490 ENDPSDRPSAELAATVCQLYLWAPKHW  516 (588)
Q Consensus       490 ~~dP~~Rps~~e~l~~L~~~~~~~h~w  516 (588)
                      +.||++|||++++++.|+..+-...+|
T Consensus       294 ~~dP~~Rps~~ell~~L~~~l~~~~~~  320 (321)
T 2qkw_B          294 ALSSEDRPSMGDVLWKLEYALRLQESV  320 (321)
T ss_dssp             CSSGGGSCCHHHHHHHHHHHHHSSCCC
T ss_pred             CCCcccCcCHHHHHHHHHHHhhcccCc
Confidence            999999999999999888766544443

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.2e-42  Score=356.31  Aligned_cols=246  Identities=25%  Similarity=0.361  Sum_probs=197.1

Q ss_pred             ccccCCeEEeeeecccCceeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCC
Q psy4039         192 DVKVDDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPH  271 (588)
Q Consensus       192 ~i~~~~~~~~~~IG~G~fG~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~H  271 (588)
                      .++.++|++.+.||+|+||.||+|.+.++.||||++....                   ..+.+.+|+.+++.+    +|
T Consensus         4 ~i~~~~~~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~-------------------~~~~~~~E~~~l~~l----~h   60 (307)
T 2eva_A            4 MIDYKEIEVEEVVGRGAFGVVCKAKWRAKDVAIKQIESES-------------------ERKAFIVELRQLSRV----NH   60 (307)
T ss_dssp             BCCGGGEEEEEEEECCSSSEEEEEEETTEEEEEEECSSTT-------------------HHHHHHHHHHHHHHC----CC
T ss_pred             cCCHhHeeeeeEeecCCCceEEEEEECCeeEEEEEecChh-------------------HHHHHHHHHHHHhcC----CC
Confidence            3556899999999999999999999999999999984210                   223466799999987    89


Q ss_pred             CceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc--CCCCHHHHHHHHHH
Q psy4039         272 PNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC--AQLSMHERVLLFTQ  348 (588)
Q Consensus       272 pNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~--~~l~~~~~~~i~~q  348 (588)
                      |||+++++++.+                              ..++||||+ +|+|.+++....  ..+++..++.++.|
T Consensus        61 p~iv~~~~~~~~------------------------------~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~q  110 (307)
T 2eva_A           61 PNIVKLYGACLN------------------------------PVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQ  110 (307)
T ss_dssp             TTBCCEEEBCTT------------------------------TTEEEEECCTTCBHHHHHHCSSSEECCCHHHHHHHHHH
T ss_pred             CCcCeEEEEEcC------------------------------CcEEEEEcCCCCCHHHHHhccCCCCccCHHHHHHHHHH
Confidence            999999998764                              168999999 579999998653  24789999999999


Q ss_pred             HHHHHHHHHh---CCceeccCCCCcEEEcCCCCCCCCc-eeeeccccccccCCCCccccccccccccCCccccchhHHhc
Q psy4039         349 LLEGVTHLNM---HRTAHRDLKSDNILLDCSEDNTCPQ-LVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALA  424 (588)
Q Consensus       349 l~~gL~yLH~---~~IvHrDLKp~NILld~~~~~~~~~-vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~  424 (588)
                      +++||.|||+   +||+||||||+|||++.+     +. +||+|||++.......        ....||+.|+|||++.+
T Consensus       111 i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~-----~~~~kl~Dfg~~~~~~~~~--------~~~~gt~~y~aPE~~~~  177 (307)
T 2eva_A          111 CSQGVAYLHSMQPKALIHRDLKPPNLLLVAG-----GTVLKICDFGTACDIQTHM--------TNNKGSAAWMAPEVFEG  177 (307)
T ss_dssp             HHHHHHHHHTCSSSCCCCCCCSGGGEEEETT-----TTEEEECCCCC--------------------CCTTSSCHHHHTC
T ss_pred             HHHHHHHHHhCCCCCeecCCCChhHEEEeCC-----CCEEEEccccccccccccc--------ccCCCCCceEChhhhCC
Confidence            9999999999   899999999999999876     44 7999999997643321        13469999999999976


Q ss_pred             CCCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccc-----cccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCH
Q psy4039         425 TPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNT-----DYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSA  499 (588)
Q Consensus       425 ~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~-----~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~  499 (588)
                      ..      ++.++|||||||++|||++|+.||.......     .......+..+..+|+.+.+++.+||+.||.+|||+
T Consensus       178 ~~------~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~  251 (307)
T 2eva_A          178 SN------YSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNGTRPPLIKNLPKPIESLMTRCWSKDPSQRPSM  251 (307)
T ss_dssp             CC------CCTHHHHHHHHHHHHHHHHTCCTTTTTCSSHHHHHHHHHTTCCCCCBTTCCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             CC------CCcHHHHHHHHHHHHHHHHCCCCchhhCccHHHHHHHHhcCCCCCcccccCHHHHHHHHHHhcCChhhCcCH
Confidence            54      4578999999999999999999997532111     111233445667899999999999999999999999


Q ss_pred             HHHHHHHhhh
Q psy4039         500 ELAATVCQLY  509 (588)
Q Consensus       500 ~e~l~~L~~~  509 (588)
                      +++++.|+..
T Consensus       252 ~ell~~L~~~  261 (307)
T 2eva_A          252 EEIVKIMTHL  261 (307)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988765

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=100.00  E-value=1.4e-42  Score=351.95  Aligned_cols=257  Identities=23%  Similarity=0.424  Sum_probs=203.8

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||.||+|.+.  ++.||||++.........           .....+.+.+|+.+++.+    +|||
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~-----------~~~~~~~~~~E~~~l~~l----~h~~   69 (283)
T 3bhy_A            5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSR-----------RGVSREEIEREVNILREI----RHPN   69 (283)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCS-----------SSBCHHHHHHHHHHHHHC----CCTT
T ss_pred             hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccc-----------cchHHHHHHHHHHHHHhC----CCCC
Confidence            67999999999999999999997  889999999653322110           011234567899999987    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++++.+..                            ..++||||+ +++|.+++.... .+++.++..++.|++.|
T Consensus        70 i~~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~i~~~  120 (283)
T 3bhy_A           70 IITLHDIFENKT----------------------------DVVLILELVSGGELFDFLAEKE-SLTEDEATQFLKQILDG  120 (283)
T ss_dssp             BCCEEEEEECSS----------------------------EEEEEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHH
T ss_pred             eeehhheecCCC----------------------------eEEEEEeecCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHH
Confidence            999999987632                            489999999 689999998764 79999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||++||+||||||+||+++.+.... ..+||+|||++.........      ....||+.|+|||++.+..      
T Consensus       121 l~~lH~~~i~H~dl~p~Nil~~~~~~~~-~~~kl~dfg~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~------  187 (283)
T 3bhy_A          121 VHYLHSKRIAHFDLKPENIMLLDKNVPN-PRIKLIDFGIAHKIEAGNEF------KNIFGTPEFVAPEIVNYEP------  187 (283)
T ss_dssp             HHHHHHTTEECSCCSGGGEEESCSSSSS-CCEEECCCTTCEECC--------------CCCGGGCCHHHHTTCC------
T ss_pred             HHHHHhCCccCCCCChHHEEEecCCCCC-CceEEEecccceeccCCCcc------cccCCCcCccCcceecCCC------
Confidence            9999999999999999999998763211 48999999999876442211      1456999999999997654      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCccccccccccc------cccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHH
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV------NALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVC  506 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~------~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L  506 (588)
                      ++.++||||||+++|||++|..||.+.........      ...+..+..+++.+.+++.+||+.||.+|||++++++  
T Consensus       188 ~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~--  265 (283)
T 3bhy_A          188 LGLEADMWSIGVITYILLSGASPFLGETKQETLTNISAVNYDFDEEYFSNTSELAKDFIRRLLVKDPKRRMTIAQSLE--  265 (283)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTTCCCCCHHHHTTCCHHHHHHHHTTSCSSGGGSCCHHHHHH--
T ss_pred             CCcchhhhhHHHHHHHHHHCCCCCCCcchHHHHHHhHhcccCCcchhcccCCHHHHHHHHHHccCCHhHCcCHHHHHh--
Confidence            45789999999999999999999976432211111      0111123567899999999999999999999999999  


Q ss_pred             hhhhhcCCcccc
Q psy4039         507 QLYLWAPKHWLY  518 (588)
Q Consensus       507 ~~~~~~~h~w~~  518 (588)
                             |||++
T Consensus       266 -------h~~~~  270 (283)
T 3bhy_A          266 -------HSWIK  270 (283)
T ss_dssp             -------CHHHH
T ss_pred             -------CHHHH
Confidence                   99986

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=100.00  E-value=1e-42  Score=372.80  Aligned_cols=259  Identities=24%  Similarity=0.292  Sum_probs=185.5

Q ss_pred             CCeEE-eeeecccCceeEEEEEEC----CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCC
Q psy4039         196 DDIQI-GKFIAKGTNAVVYEATFR----GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPP  270 (588)
Q Consensus       196 ~~~~~-~~~IG~G~fG~Vy~a~~~----g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~  270 (588)
                      +.|++ +++||+|+||+||+|.++    ++.||||++....                   ....+.+|+.+++.+    +
T Consensus        20 ~~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~-------------------~~~~~~~E~~~l~~l----~   76 (405)
T 3rgf_A           20 DLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTG-------------------ISMSACREIALLREL----K   76 (405)
T ss_dssp             HHEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSS-------------------CCHHHHHHHHHHHHC----C
T ss_pred             hhhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCC-------------------CCHHHHHHHHHHHhc----C
Confidence            55776 568999999999999976    6789999984321                   123456799999998    8


Q ss_pred             CCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhc--------CCCCHHHH
Q psy4039         271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERC--------AQLSMHER  342 (588)
Q Consensus       271 HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~--------~~l~~~~~  342 (588)
                      |||||+++++|.+..                          ...+++||||++|+|.+++....        ..+++..+
T Consensus        77 hpniv~~~~~~~~~~--------------------------~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~  130 (405)
T 3rgf_A           77 HPNVISLQKVFLSHA--------------------------DRKVWLLFDYAEHDLWHIIKFHRASKANKKPVQLPRGMV  130 (405)
T ss_dssp             CTTBCCCCEEEEETT--------------------------TTEEEEEEECCSEEHHHHHHHHHHHC-------CCHHHH
T ss_pred             CCCeeeEeeEEecCC--------------------------CCeEEEEEeCCCCCHHHHHHHhccccccccccCCCHHHH
Confidence            999999999986521                          22599999999999999987431        24999999


Q ss_pred             HHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHH
Q psy4039         343 VLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVA  422 (588)
Q Consensus       343 ~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l  422 (588)
                      +.++.||+.||.|||++||+||||||+|||+..+.... +.+||+|||+|+........  .......+||+.|+|||++
T Consensus       131 ~~i~~qi~~al~~LH~~~ivH~Dlkp~NIll~~~~~~~-~~~kl~Dfg~a~~~~~~~~~--~~~~~~~~gt~~y~aPE~~  207 (405)
T 3rgf_A          131 KSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPER-GRVKIADMGFARLFNSPLKP--LADLDPVVVTFWYRAPELL  207 (405)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECCSSTTT-TCEEECCTTCCC------------------CCCTTCCHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCEeCCCcCHHHeEEecCCCCC-CcEEEEECCCceecCCCCcc--cccCCCceecCcccCchhh
Confidence            99999999999999999999999999999994331111 79999999999876542211  1111246799999999999


Q ss_pred             hcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccc------------------------ccc-----------
Q psy4039         423 LATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD------------------------YEV-----------  467 (588)
Q Consensus       423 ~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~------------------------~~~-----------  467 (588)
                      .+...     ++.++|||||||++|||++|++||.+......                        +..           
T Consensus       208 ~~~~~-----~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~  282 (405)
T 3rgf_A          208 LGARH-----YTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRIFNVMGFPADKDWEDIKKMPEHSTLM  282 (405)
T ss_dssp             TTCCS-----CCHHHHHHHHHHHHHHHHHSSCTTCCCC------CCCCHHHHHHHHHHHCCCCTTTCGGGGGSTTHHHHH
T ss_pred             cCCCc-----ccchhhhHHHHHHHHHHHhCCCCCCCccccccccccchHHHHHHHHHhhCCCChhhcchhhcCcchhhhh
Confidence            76431     45679999999999999999999965321100                        000           


Q ss_pred             -----ccc---------CCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccCC
Q psy4039         468 -----NAL---------PQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGA  520 (588)
Q Consensus       468 -----~~~---------~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~  520 (588)
                           ...         .......++++.+||.+||+.||.+|||++|+++         ||||...
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~L~~dP~~R~ta~e~L~---------hp~f~~~  340 (405)
T 3rgf_A          283 KDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQAMQ---------DPYFLED  340 (405)
T ss_dssp             HHCCGGGGTTCCHHHHHHTTTCCTTSHHHHHHHHHSCSSGGGSCCHHHHHT---------SGGGTSS
T ss_pred             hhccccCCCcchhhhhHhhcCCCCCHHHHHHHHHHccCCcccCCCHHHHhc---------ChhhccC
Confidence                 000         0001123678999999999999999999999999         9999843

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=100.00  E-value=1.5e-42  Score=381.41  Aligned_cols=256  Identities=23%  Similarity=0.270  Sum_probs=211.0

Q ss_pred             CccccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhc
Q psy4039         189 DVDDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVE  266 (588)
Q Consensus       189 ~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~  266 (588)
                      ..|++..++|++.+.||+|+||.||+|.+.  +..||||++.....                  ..+.+.+|+.+|+.+ 
T Consensus       213 ~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~------------------~~~~~~~E~~~l~~l-  273 (495)
T 1opk_A          213 DKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM------------------EVEEFLKEAAVMKEI-  273 (495)
T ss_dssp             SCCBCCGGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSS------------------CHHHHHHHHHHHHHC-
T ss_pred             cccccCHHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCccc------------------chHHHHHHHHHHHhc-
Confidence            457788889999999999999999999998  78999999853211                  234567799999998 


Q ss_pred             CCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh-cCCCCHHHHHH
Q psy4039         267 NLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER-CAQLSMHERVL  344 (588)
Q Consensus       267 ~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~-~~~l~~~~~~~  344 (588)
                         +|||||+++++|.+..                            .+++||||+ +|+|.+++... ...+++..++.
T Consensus       274 ---~hpniv~l~~~~~~~~----------------------------~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~  322 (495)
T 1opk_A          274 ---KHPNLVQLLGVCTREP----------------------------PFYIITEFMTYGNLLDYLRECNRQEVSAVVLLY  322 (495)
T ss_dssp             ---CCTTBCCEEEEECSSS----------------------------SCEEEEECCTTCBHHHHHHHSCTTTSCHHHHHH
T ss_pred             ---CCCCEeeEEEEEecCC----------------------------cEEEEEEccCCCCHHHHHHhcCcCCCCHHHHHH
Confidence               8999999999987632                            389999999 58999999874 34699999999


Q ss_pred             HHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhc
Q psy4039         345 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALA  424 (588)
Q Consensus       345 i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~  424 (588)
                      ++.||+.||.|||+++|+||||||+|||++.+     +.+||+|||+++.........    .....+|+.|+|||++.+
T Consensus       323 i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~-----~~~kl~DFG~a~~~~~~~~~~----~~~~~~~~~y~aPE~~~~  393 (495)
T 1opk_A          323 MATQISSAMEYLEKKNFIHRNLAARNCLVGEN-----HLVKVADFGLSRLMTGDTYTA----HAGAKFPIKWTAPESLAY  393 (495)
T ss_dssp             HHHHHHHHHHHHHHTTEECSCCSGGGEEECGG-----GCEEECCTTCEECCTTCCEEC----CTTCCCCGGGCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCcccCCCChhhEEECCC-----CcEEEeecccceeccCCceee----cCCCcCCcceeCHhHHhc
Confidence            99999999999999999999999999999887     799999999998765422111    113457889999999987


Q ss_pred             CCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCccccccccc---cccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHH
Q psy4039         425 TPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTDY---EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE  500 (588)
Q Consensus       425 ~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~~---~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~  500 (588)
                      ..      ++.++|||||||++|||++ |..||.+.......   ........+..+|+++.+||.+||+.||++|||++
T Consensus       394 ~~------~~~~sDvwSlG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~  467 (495)
T 1opk_A          394 NK------FSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFA  467 (495)
T ss_dssp             CE------ECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             CC------CCcHHhHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCcChhHCcCHH
Confidence            64      4578999999999999999 99999764322211   22233456778999999999999999999999999


Q ss_pred             HHHHHHhhh
Q psy4039         501 LAATVCQLY  509 (588)
Q Consensus       501 e~l~~L~~~  509 (588)
                      ++++.|+.+
T Consensus       468 el~~~L~~~  476 (495)
T 1opk_A          468 EIHQAFETM  476 (495)
T ss_dssp             HHHHHHHTS
T ss_pred             HHHHHHHHH
Confidence            999988744

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=100.00  E-value=6.9e-42  Score=349.36  Aligned_cols=266  Identities=23%  Similarity=0.347  Sum_probs=207.1

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      .++|++.+.||+|+||.||+|.+.  ++.||||++.............        ....+.+.+|+.+++.+   ..||
T Consensus        16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~--------~~~~~~~~~e~~~l~~l---~~h~   84 (298)
T 1phk_A           16 YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEV--------QELREATLKEVDILRKV---SGHP   84 (298)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHH--------HHHHHHHHHHHHHHHHH---TTCT
T ss_pred             hhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHH--------HHHHHHHHHHHHHHHHh---cCCC
Confidence            389999999999999999999996  7899999996543221111110        11234456799999988   3599


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLE  351 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~  351 (588)
                      ||+++++++.+.                            ...++||||+ +++|.+++.... .+++..++.++.||+.
T Consensus        85 ~i~~~~~~~~~~----------------------------~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~  135 (298)
T 1phk_A           85 NIIQLKDTYETN----------------------------TFFFLVFDLMKKGELFDYLTEKV-TLSEKETRKIMRALLE  135 (298)
T ss_dssp             TBCCEEEEEECS----------------------------SEEEEEEECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHH
T ss_pred             CEeeeeeeeccC----------------------------CeEEEEEeccCCCcHHHHHhccC-CCCHHHHHHHHHHHHH
Confidence            999999998763                            2499999999 579999998764 8999999999999999


Q ss_pred             HHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccC
Q psy4039         352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF  431 (588)
Q Consensus       352 gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~  431 (588)
                      ||.|||++||+||||||+||+++.+     +.+||+|||++.........      ....||+.|+|||++.+.......
T Consensus       136 ~l~~lH~~~i~H~dl~p~Nil~~~~-----~~~kl~dfg~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~  204 (298)
T 1phk_A          136 VICALHKLNIVHRDLKPENILLDDD-----MNIKLTDFGFSCQLDPGEKL------REVCGTPSYLAPEIIECSMNDNHP  204 (298)
T ss_dssp             HHHHHHHTTEECSCCSGGGEEECTT-----CCEEECCCTTCEECCTTCCB------CCCCSCGGGCCHHHHHHHHCTTSC
T ss_pred             HHHHHHHCCcccCCCCcceEEEcCC-----CcEEEecccchhhcCCCccc------ccccCCccccCHHHhccccccccc
Confidence            9999999999999999999999987     78999999999876543211      245699999999998642111111


Q ss_pred             CCCCcCchhhHHHHHHHHhcCCCCCcccccccccc---c---cccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHH
Q psy4039         432 VNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE---V---NALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATV  505 (588)
Q Consensus       432 ~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~---~---~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~  505 (588)
                      .++.++||||||+++|||++|..||..........   .   ....+.+..+++++.+++.+||+.||.+|||++++++ 
T Consensus       205 ~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~-  283 (298)
T 1phk_A          205 GYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMSGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALA-  283 (298)
T ss_dssp             CBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTT-
T ss_pred             cCCcccccHhHHHHHHHHHHCCCCCcCccHHHHHHHHhcCCcccCcccccccCHHHHHHHHHHccCCcccCCCHHHHHh-
Confidence            14568999999999999999999997642211111   0   0111222467899999999999999999999999988 


Q ss_pred             HhhhhhcCCccccCC
Q psy4039         506 CQLYLWAPKHWLYGA  520 (588)
Q Consensus       506 L~~~~~~~h~w~~~~  520 (588)
                              |||++..
T Consensus       284 --------h~~~~~~  290 (298)
T 1phk_A          284 --------HPFFQQY  290 (298)
T ss_dssp             --------SGGGCTT
T ss_pred             --------ChHhhhc
Confidence                    9999754

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=100.00  E-value=2e-42  Score=360.95  Aligned_cols=254  Identities=23%  Similarity=0.305  Sum_probs=207.4

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      .++|.+.+.||+|+||.||+|.+.  ++.||+|++........              ...+.+.+|+.+++.+    +||
T Consensus        40 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~--------------~~~~~~~~E~~~l~~l----~h~  101 (335)
T 2owb_A           40 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKP--------------HQREKMSMEISIHRSL----AHQ  101 (335)
T ss_dssp             TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSH--------------HHHHHHHHHHHHHHTC----CCT
T ss_pred             CCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCH--------------HHHHHHHHHHHHHHhC----CCC
Confidence            478999999999999999999997  78999999864321110              1233456789999887    999


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLE  351 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~  351 (588)
                      ||+++++++.+..                            .+|+||||+ +++|.+++.... .+++.+++.++.||+.
T Consensus       102 ~iv~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~~~~~~-~l~~~~~~~i~~qi~~  152 (335)
T 2owb_A          102 HVVGFHGFFEDND----------------------------FVFVVLELCRRRSLLELHKRRK-ALTEPEARYYLRQIVL  152 (335)
T ss_dssp             TBCCEEEEEECSS----------------------------EEEEEECCCTTCBHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEecCC----------------------------eEEEEEecCCCCCHHHHHhccC-CCCHHHHHHHHHHHHH
Confidence            9999999998632                            489999999 479999988764 8999999999999999


Q ss_pred             HHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccC
Q psy4039         352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF  431 (588)
Q Consensus       352 gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~  431 (588)
                      ||.|||++||+||||||+|||++.+     +.+||+|||+++........     .....||+.|+|||++.+..     
T Consensus       153 aL~~LH~~~ivH~dlkp~NIl~~~~-----~~~kl~Dfg~~~~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~-----  217 (335)
T 2owb_A          153 GCQYLHRNRVIHRDLKLGNLFLNED-----LEVKIGDFGLATKVEYDGER-----KKVLCGTPNYIAPEVLSKKG-----  217 (335)
T ss_dssp             HHHHHHHTTEECSCCCGGGEEECTT-----CCEEECCCTTCEECCSTTCC-----BCCCCSCCSSCCHHHHHTSC-----
T ss_pred             HHHHHHHCCCEecCCCchhEEEcCC-----CCEEEeeccCceecccCccc-----ccccCCCccccCHHHhccCC-----
Confidence            9999999999999999999999987     78999999999876432211     12457999999999997664     


Q ss_pred             CCCCcCchhhHHHHHHHHhcCCCCCcccccccccc--ccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhh
Q psy4039         432 VNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLY  509 (588)
Q Consensus       432 ~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~--~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~  509 (588)
                       ++.++|||||||++|||++|+.||........+.  ......++..+++++.+||.+||+.||++|||++++++     
T Consensus       218 -~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~-----  291 (335)
T 2owb_A          218 -HSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKNEYSIPKHINPVAASLIQKMLQTDPTARPTINELLN-----  291 (335)
T ss_dssp             -BCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCCCTTSCHHHHHHHHHHTCSSGGGSCCGGGGGG-----
T ss_pred             -CCchhhHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHhcCCCCCCccCCHHHHHHHHHHccCChhHCcCHHHHhc-----
Confidence             4568999999999999999999997643222111  11223456788999999999999999999999999988     


Q ss_pred             hhcCCccccCC
Q psy4039         510 LWAPKHWLYGA  520 (588)
Q Consensus       510 ~~~~h~w~~~~  520 (588)
                          |||+...
T Consensus       292 ----~~~~~~~  298 (335)
T 2owb_A          292 ----DEFFTSG  298 (335)
T ss_dssp             ----SHHHHTS
T ss_pred             ----CccccCC
Confidence                9999843

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=100.00  E-value=2.9e-42  Score=350.47  Aligned_cols=257  Identities=23%  Similarity=0.267  Sum_probs=211.0

Q ss_pred             CccccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhc
Q psy4039         189 DVDDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVE  266 (588)
Q Consensus       189 ~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~  266 (588)
                      ..|++..++|++.+.||+|+||.||+|.+.  +..||||++.....                  ..+.+.+|+.+++.+ 
T Consensus         6 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~------------------~~~~~~~E~~~l~~l-   66 (288)
T 3kfa_A            6 DKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM------------------EVEEFLKEAAVMKEI-   66 (288)
T ss_dssp             CTTBCCGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCST------------------HHHHHHHHHHHHHHC-
T ss_pred             hcccccccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCHH------------------HHHHHHHHHHHHHhC-
Confidence            467788899999999999999999999998  78999999853110                  223456799999998 


Q ss_pred             CCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCC-CcHHHHHHHh-cCCCCHHHHHH
Q psy4039         267 NLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYN-TDLRNYLRER-CAQLSMHERVL  344 (588)
Q Consensus       267 ~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~-gsL~~~L~~~-~~~l~~~~~~~  344 (588)
                         +||||+++++++.+..                            ..++||||+. ++|.+++... ...+++..++.
T Consensus        67 ---~h~~i~~~~~~~~~~~----------------------------~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~  115 (288)
T 3kfa_A           67 ---KHPNLVQLLGVCTREP----------------------------PFYIITEFMTYGNLLDYLRECNRQEVSAVVLLY  115 (288)
T ss_dssp             ---CCTTBCCEEEEECSSS----------------------------SEEEEEECCTTEEHHHHHHHCCTTTSCHHHHHH
T ss_pred             ---CCCCEeeEEEEEccCC----------------------------CEEEEEEcCCCCcHHHHHHhcccCCccHhHHHH
Confidence               8999999999987632                            3899999995 8999999874 34699999999


Q ss_pred             HHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhc
Q psy4039         345 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALA  424 (588)
Q Consensus       345 i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~  424 (588)
                      ++.|++.||.|||++||+||||||+||+++.+     +.+||+|||++..........    .....||+.|+|||++.+
T Consensus       116 i~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~-----~~~~l~Dfg~~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~  186 (288)
T 3kfa_A          116 MATQISSAMEYLEKKNFIHRDLAARNCLVGEN-----HLVKVADFGLSRLMTGDTYTA----HAGAKFPIKWTAPESLAY  186 (288)
T ss_dssp             HHHHHHHHHHHHHHHTCCCSCCSGGGEEECGG-----GCEEECCCCGGGTSCSSSSEE----ETTEEECGGGCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCccCCCCCcceEEEcCC-----CCEEEccCccceeccCCcccc----ccCCccccCcCChhhhcc
Confidence            99999999999999999999999999999887     789999999998765432211    123457889999999987


Q ss_pred             CCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHH
Q psy4039         425 TPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE  500 (588)
Q Consensus       425 ~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~  500 (588)
                      ..      ++.++||||||+++|+|++ |..||........   .........+..+|+++.+++.+||+.||.+|||++
T Consensus       187 ~~------~~~~~Di~slG~il~~ll~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~  260 (288)
T 3kfa_A          187 NK------FSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFA  260 (288)
T ss_dssp             CC------CCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             CC------CCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhccCCCCCCCCCCHHHHHHHHHHhCCChhhCcCHH
Confidence            65      4568999999999999999 9999976432221   122233455678999999999999999999999999


Q ss_pred             HHHHHHhhhh
Q psy4039         501 LAATVCQLYL  510 (588)
Q Consensus       501 e~l~~L~~~~  510 (588)
                      ++++.|+.++
T Consensus       261 ~~~~~l~~~~  270 (288)
T 3kfa_A          261 EIHQAFETMF  270 (288)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999887554

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=100.00  E-value=1.7e-42  Score=376.76  Aligned_cols=258  Identities=19%  Similarity=0.259  Sum_probs=206.7

Q ss_pred             CCccccccCCeEEeeeecccCceeEEEEEEC-CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhc
Q psy4039         188 PDVDDVKVDDIQIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVE  266 (588)
Q Consensus       188 ~~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~  266 (588)
                      ...|++..++|++.+.||+|+||.||+|.+. +..||||++.....                  ..+.+.+|+.+|+.+ 
T Consensus       176 ~~~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~------------------~~~~~~~E~~~l~~l-  236 (452)
T 1fmk_A          176 KDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM------------------SPEAFLQEAQVMKKL-  236 (452)
T ss_dssp             TTCSBCCGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSS------------------CHHHHHHHHHHHHHC-
T ss_pred             ccccccChhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCCC------------------CHHHHHHHHHHHHhC-
Confidence            4667888899999999999999999999998 46899999853211                  224567899999998 


Q ss_pred             CCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh-cCCCCHHHHHH
Q psy4039         267 NLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER-CAQLSMHERVL  344 (588)
Q Consensus       267 ~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~-~~~l~~~~~~~  344 (588)
                         +||||+++++++.+.                             ..++||||+ +|+|.+++... +..+++.++..
T Consensus       237 ---~hp~iv~~~~~~~~~-----------------------------~~~iv~e~~~~gsL~~~l~~~~~~~~~~~~~~~  284 (452)
T 1fmk_A          237 ---RHEKLVQLYAVVSEE-----------------------------PIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVD  284 (452)
T ss_dssp             ---CCTTBCCEEEEECSS-----------------------------SCEEEECCCTTCBHHHHHSHHHHTTCCHHHHHH
T ss_pred             ---CCCCEeeEEEEEcCC-----------------------------ceEEEehhhcCCCHHHHHHhcCCCCCCHHHHHH
Confidence               899999999998652                             278999999 67999999754 34699999999


Q ss_pred             HHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhc
Q psy4039         345 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALA  424 (588)
Q Consensus       345 i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~  424 (588)
                      ++.||+.||.|||+++|+||||||+|||++.+     +.+||+|||+++........    ......||+.|+|||++.+
T Consensus       285 i~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~-----~~~kl~DfG~a~~~~~~~~~----~~~~~~~~~~y~aPE~~~~  355 (452)
T 1fmk_A          285 MAAQIASGMAYVERMNYVHRDLRAANILVGEN-----LVCKVADFGLARLIEDNEYT----ARQGAKFPIKWTAPEAALY  355 (452)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCSGGGEEECGG-----GCEEECCCCTTC------------------CCGGGSCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCeeCCCCChhhEEECCC-----CCEEECCCccceecCCCcee----cccCCcccccccCHhHHhc
Confidence            99999999999999999999999999999987     79999999999876442111    1113457889999999987


Q ss_pred             CCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHH
Q psy4039         425 TPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE  500 (588)
Q Consensus       425 ~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~  500 (588)
                      ..      ++.++|||||||++|||++ |+.||.+......   .......+.+..+|+++.++|.+||+.||++|||++
T Consensus       356 ~~------~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rpt~~  429 (452)
T 1fmk_A          356 GR------FTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFE  429 (452)
T ss_dssp             CC------CCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             CC------CCccccHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHccCChhhCcCHH
Confidence            65      4578999999999999999 9999976432211   122233456678999999999999999999999999


Q ss_pred             HHHHHHhhhhh
Q psy4039         501 LAATVCQLYLW  511 (588)
Q Consensus       501 e~l~~L~~~~~  511 (588)
                      ++++.|+.++.
T Consensus       430 ~l~~~L~~~~~  440 (452)
T 1fmk_A          430 YLQAFLEDYFT  440 (452)
T ss_dssp             HHHHHHHTTTS
T ss_pred             HHHHHHHHHhc
Confidence            99998886653

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=100.00  E-value=3.3e-42  Score=352.39  Aligned_cols=262  Identities=19%  Similarity=0.214  Sum_probs=207.5

Q ss_pred             CccccccCCeEEeeeecccCceeEEEEEE------CCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHH
Q psy4039         189 DVDDVKVDDIQIGKFIAKGTNAVVYEATF------RGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLM  262 (588)
Q Consensus       189 ~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~------~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il  262 (588)
                      ....+..+.|++.+.||+|+||.||+|++      .++.||||++.....                ......+.+|+.++
T Consensus        14 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~----------------~~~~~~~~~E~~~l   77 (302)
T 4e5w_A           14 DPTHFEKRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESG----------------GNHIADLKKEIEIL   77 (302)
T ss_dssp             CTTBCCGGGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC---------------------CCHHHHHHHHHHH
T ss_pred             ChhhhhhhhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEeccccc----------------chhHHHHHHHHHHH
Confidence            33445567799999999999999999995      288999999853211                11234566799999


Q ss_pred             hhhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHH
Q psy4039         263 NSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHE  341 (588)
Q Consensus       263 ~~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~  341 (588)
                      +.+    +||||+++++++.+..                          ...+++||||+ +|+|.+++......+++.+
T Consensus        78 ~~l----~h~~i~~~~~~~~~~~--------------------------~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~  127 (302)
T 4e5w_A           78 RNL----YHENIVKYKGICTEDG--------------------------GNGIKLIMEFLPSGSLKEYLPKNKNKINLKQ  127 (302)
T ss_dssp             HTC----CCTTBCCEEEEEEC-----------------------------CCEEEEEECCTTCBHHHHHHHHTTTCCHHH
T ss_pred             HhC----CCCCeeeeeeEEecCC--------------------------CceEEEEEEeCCCCcHHHHHHhccccCCHHH
Confidence            987    8999999999988632                          12489999999 5799999987766899999


Q ss_pred             HHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhH
Q psy4039         342 RVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEV  421 (588)
Q Consensus       342 ~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~  421 (588)
                      ++.++.|++.||.|||++||+||||||+|||++.+     +.+||+|||+++........  ........||+.|+|||+
T Consensus       128 ~~~~~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~-----~~~kl~Dfg~~~~~~~~~~~--~~~~~~~~~~~~y~aPE~  200 (302)
T 4e5w_A          128 QLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESE-----HQVKIGDFGLTKAIETDKEY--YTVKDDRDSPVFWYAPEC  200 (302)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEET-----TEEEECCCTTCEECCTTCCE--EECCCCTTCCGGGCCHHH
T ss_pred             HHHHHHHHHHHHHHhhcCCcccCCCchheEEEcCC-----CCEEECcccccccccCCCcc--eeccCCCCCCccccCCee
Confidence            99999999999999999999999999999999988     79999999999876553221  111224568999999999


Q ss_pred             HhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccc------------------cccccccccCCCCCCccHHHHH
Q psy4039         422 ALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSAR------------------NTDYEVNALPQLNTNVPEVMRR  483 (588)
Q Consensus       422 l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~------------------~~~~~~~~~~~~~~~~~~~l~~  483 (588)
                      +.+..      ++.++|||||||++|||++|..|+.....                  ............+..+|+++.+
T Consensus       201 ~~~~~------~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  274 (302)
T 4e5w_A          201 LMQSK------FYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNTLKEGKRLPCPPNCPDEVYQ  274 (302)
T ss_dssp             HHHCE------EEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCGGGHHHHHHHHHHTTCCCCCCTTCCHHHHH
T ss_pred             ecCCC------CCcchhHHHHHHHHHHHHHccCCCcchhhHHhhccCCcccccCHHHHHHHHhccCCCCCCCCCCHHHHH
Confidence            98765      34679999999999999999998754210                  0011122334556789999999


Q ss_pred             HHHHhhhhCCCCCCCHHHHHHHHhhh
Q psy4039         484 LVAKLLENDPSDRPSAELAATVCQLY  509 (588)
Q Consensus       484 Li~~~L~~dP~~Rps~~e~l~~L~~~  509 (588)
                      |+.+||+.||.+|||++++++.|+..
T Consensus       275 li~~~l~~dp~~Rps~~~ll~~L~~l  300 (302)
T 4e5w_A          275 LMRKCWEFQPSNRTSFQNLIEGFEAL  300 (302)
T ss_dssp             HHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred             HHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence            99999999999999999999988754

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=100.00  E-value=2.4e-42  Score=349.73  Aligned_cols=258  Identities=21%  Similarity=0.260  Sum_probs=209.6

Q ss_pred             CCccccccCCeEEeeeecccCceeEEEEEEC-CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhc
Q psy4039         188 PDVDDVKVDDIQIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVE  266 (588)
Q Consensus       188 ~~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~  266 (588)
                      .++|++..++|++.+.||+|+||.||+|.+. +..||||.+.....                  ..+.+.+|+.+++.+ 
T Consensus         5 ~~~~~v~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~------------------~~~~~~~E~~~l~~l-   65 (279)
T 1qpc_A            5 EDEWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSM------------------SPDAFLAEANLMKQL-   65 (279)
T ss_dssp             TCTTBCCGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSS------------------CHHHHHHHHHHHHHC-
T ss_pred             hhhcccCHHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCcc------------------cHHHHHHHHHHHHhC-
Confidence            4567888899999999999999999999987 56899999853211                  223466799999987 


Q ss_pred             CCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc-CCCCHHHHHH
Q psy4039         267 NLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC-AQLSMHERVL  344 (588)
Q Consensus       267 ~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~-~~l~~~~~~~  344 (588)
                         +||||+++++++.+.                             ..++||||+ +++|.+++.... ..+++.++..
T Consensus        66 ---~h~~i~~~~~~~~~~-----------------------------~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~  113 (279)
T 1qpc_A           66 ---QHQRLVRLYAVVTQE-----------------------------PIYIITEYMENGSLVDFLKTPSGIKLTINKLLD  113 (279)
T ss_dssp             ---CCTTBCCEEEEECSS-----------------------------SCEEEEECCTTCBHHHHTTSHHHHTCCHHHHHH
T ss_pred             ---CCcCcceEEEEEcCC-----------------------------CcEEEEecCCCCCHHHHHhcCCCCCCCHHHHHH
Confidence               899999999987642                             278999999 689999997542 3699999999


Q ss_pred             HHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhc
Q psy4039         345 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALA  424 (588)
Q Consensus       345 i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~  424 (588)
                      ++.|++.||.|||++||+||||||+|||++.+     +.+||+|||+++.........    .....||+.|+|||++.+
T Consensus       114 i~~qi~~~l~~lH~~~i~H~dikp~Nil~~~~-----~~~kl~Dfg~~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~  184 (279)
T 1qpc_A          114 MAAQIAEGMAFIEERNYIHRDLRAANILVSDT-----LSCKIADFGLARLIEDNEYTA----REGAKFPIKWTAPEAINY  184 (279)
T ss_dssp             HHHHHHHHHHHHHHTTEECSCCSGGGEEECTT-----SCEEECCCTTCEECSSSCEEC----CTTCCCCTTTSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCeeccCCCHhhEEEcCC-----CCEEECCCcccccccCccccc----ccCCCCccCccChhhhcc
Confidence            99999999999999999999999999999977     799999999998765432111    113457889999999976


Q ss_pred             CCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHH
Q psy4039         425 TPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE  500 (588)
Q Consensus       425 ~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~  500 (588)
                      ..      ++.++|||||||++|||++ |+.||.+......   .........+..+|+++.+++.+||+.||++|||++
T Consensus       185 ~~------~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~  258 (279)
T 1qpc_A          185 GT------FTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFD  258 (279)
T ss_dssp             CE------ECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             CC------CCchhhhHHHHHHHHHHHhCCCCCCcccCHHHHHHHHhcccCCCCcccccHHHHHHHHHHhccChhhCCCHH
Confidence            54      3467999999999999999 9999976422211   112223345678899999999999999999999999


Q ss_pred             HHHHHHhhhhh
Q psy4039         501 LAATVCQLYLW  511 (588)
Q Consensus       501 e~l~~L~~~~~  511 (588)
                      ++++.|+.++.
T Consensus       259 ~l~~~l~~~~~  269 (279)
T 1qpc_A          259 YLRSVLEDFFT  269 (279)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99998886653

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=100.00  E-value=3.9e-42  Score=356.65  Aligned_cols=249  Identities=19%  Similarity=0.268  Sum_probs=198.4

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      .++|++.+.||+|+||.||+|.+.  ++.||||++...                    ..+.+.+|+.+++.+   ..||
T Consensus        35 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--------------------~~~~~~~E~~~l~~l---~~~~   91 (330)
T 3nsz_A           35 QDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV--------------------KKKKIKREIKILENL---RGGP   91 (330)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC--------------------CHHHHHHHHHHHHHH---TTST
T ss_pred             CCceEEEEEecccCCeEEEEEEECCCCcEEEEEEeccc--------------------chHHHHHHHHHHHHc---CCCC
Confidence            388999999999999999999886  889999998421                    223466799999998   3599


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLE  351 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~  351 (588)
                      ||+++++++.+..                          ....++||||+ +++|.+++.    .+++.++..++.||+.
T Consensus        92 ~i~~~~~~~~~~~--------------------------~~~~~lv~e~~~~~~l~~~~~----~~~~~~~~~~~~qi~~  141 (330)
T 3nsz_A           92 NIITLADIVKDPV--------------------------SRTPALVFEHVNNTDFKQLYQ----TLTDYDIRFYMYEILK  141 (330)
T ss_dssp             TBCCEEEEEECTT--------------------------TCCEEEEEECCCCCCHHHHGG----GCCHHHHHHHHHHHHH
T ss_pred             CEEEeeeeeccCC--------------------------CCceEEEEeccCchhHHHHHH----hCCHHHHHHHHHHHHH
Confidence            9999999987631                          12489999999 578988873    6899999999999999


Q ss_pred             HHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccC
Q psy4039         352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF  431 (588)
Q Consensus       352 gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~  431 (588)
                      ||.|||++||+||||||+|||++.+.    ..+||+|||+|+........      ....||+.|+|||++.+...    
T Consensus       142 ~l~~lH~~~ivH~Dikp~Nil~~~~~----~~~kl~Dfg~a~~~~~~~~~------~~~~~~~~y~aPE~~~~~~~----  207 (330)
T 3nsz_A          142 ALDYCHSMGIMHRDVKPHNVMIDHEH----RKLRLIDWGLAEFYHPGQEY------NVRVASRYFKGPELLVDYQM----  207 (330)
T ss_dssp             HHHHHHHTTEECCCCSGGGEEEETTT----TEEEECCCTTCEECCTTCCC------CSCCSCGGGCCHHHHTTCCC----
T ss_pred             HHHHHHhCCeeeCCCCHHHEEEcCCC----CEEEEEeCCCceEcCCCCcc------ccccccccccChhhhcCCCc----
Confidence            99999999999999999999998662    38999999999876543221      14578999999999976321    


Q ss_pred             CCCCcCchhhHHHHHHHHhcCCCCCccccccc----------------------------------------cccccccC
Q psy4039         432 VNYSKSDAWTAGTVAYEIFGHDNPFYQSARNT----------------------------------------DYEVNALP  471 (588)
Q Consensus       432 ~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~----------------------------------------~~~~~~~~  471 (588)
                       ++.++|||||||++|||++|+.||.......                                        .+......
T Consensus       208 -~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (330)
T 3nsz_A          208 -YDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHS  286 (330)
T ss_dssp             -CCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCCCTHHHHHHCCCCCCCGGGGCCT
T ss_pred             -CCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHHHHhcCCchhhhHHHHhccccccchhhhhhhccccchhhhccc
Confidence             4578999999999999999999995421100                                        00000011


Q ss_pred             CCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccCC
Q psy4039         472 QLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGA  520 (588)
Q Consensus       472 ~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~  520 (588)
                      ..+..+++++++||.+||+.||.+|||++++++         ||||+..
T Consensus       287 ~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~---------hp~f~~~  326 (330)
T 3nsz_A          287 ENQHLVSPEALDFLDKLLRYDHQSRLTAREAME---------HPYFYTV  326 (330)
T ss_dssp             TTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHT---------SGGGTTC
T ss_pred             cccccCCHHHHHHHHHHhcCCcccCCCHHHHhc---------CccHhhh
Confidence            112337899999999999999999999999999         9999744

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=100.00  E-value=1e-42  Score=360.48  Aligned_cols=261  Identities=25%  Similarity=0.296  Sum_probs=200.3

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|.+.+.||+|+||.||+|.+.  ++.||||++.........         .........+.+|+.+++.+    +|||
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~---------~~~~~~~~~~~~E~~~l~~l----~h~~   76 (322)
T 2ycf_A           10 DEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGS---------AREADPALNVETEIEILKKL----NHPC   76 (322)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC------------------------CHHHHHHHHHHC----CCTT
T ss_pred             hceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcc---------cccchhhhhHHHHHHHHHhC----CCCC
Confidence            78999999999999999999986  789999999543211100         00011234567899999997    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++++.+.                             ..|+||||+ +++|.+++.... .+++..++.++.||+.|
T Consensus        77 i~~~~~~~~~~-----------------------------~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~qi~~~  126 (322)
T 2ycf_A           77 IIKIKNFFDAE-----------------------------DYYIVLELMEGGELFDKVVGNK-RLKEATCKLYFYQMLLA  126 (322)
T ss_dssp             BCCEEEEEESS-----------------------------SEEEEEECCTTEETHHHHSTTC-CCCHHHHHHHHHHHHHH
T ss_pred             CceEeeEEcCC-----------------------------ceEEEEecCCCCcHHHHHhccC-CCCHHHHHHHHHHHHHH
Confidence            99999998652                             289999999 579999987654 79999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||++||+||||||+|||++.+...  ..+||+|||+++.......      .....||+.|+|||++.+....   .
T Consensus       127 l~~lH~~~ivH~dlkp~NIl~~~~~~~--~~~kl~Dfg~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~---~  195 (322)
T 2ycf_A          127 VQYLHENGIIHRDLKPENVLLSSQEED--CLIKITDFGHSKILGETSL------MRTLCGTPTYLAPEVLVSVGTA---G  195 (322)
T ss_dssp             HHHHHHTTEECCCCSGGGEEESSSSSS--CCEEECCCTTCEECCCCHH------HHHHHSCCTTCCHHHHHHTTTT---T
T ss_pred             HHHHHHCCeeccCCCHHHEEEecCCCC--CeEEEccCccceecccccc------cccccCCcCccCchhhccCCCC---C
Confidence            999999999999999999999876211  4699999999987644211      1245699999999998642110   1


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcccccccccc----cc---ccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHH
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE----VN---ALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATV  505 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~----~~---~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~  505 (588)
                      ++.++|||||||++|||++|..||..........    ..   ..+..+..+++++.++|.+||+.||++|||++++++ 
T Consensus       196 ~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~-  274 (322)
T 2ycf_A          196 YNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALR-  274 (322)
T ss_dssp             CTTHHHHHHHHHHHHHHHHSSCSSCSTTCSSCHHHHHHHTCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT-
T ss_pred             CCchhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHHhCccccCchhhhhcCHHHHHHHHHHcccCHhhCCCHHHHhh-
Confidence            4578999999999999999999997643221111    11   111223568899999999999999999999999999 


Q ss_pred             HhhhhhcCCccccC
Q psy4039         506 CQLYLWAPKHWLYG  519 (588)
Q Consensus       506 L~~~~~~~h~w~~~  519 (588)
                              |||++.
T Consensus       275 --------h~~~~~  280 (322)
T 2ycf_A          275 --------HPWLQD  280 (322)
T ss_dssp             --------SGGGCC
T ss_pred             --------CcCcCC
Confidence                    999963

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=100.00  E-value=1.1e-42  Score=369.07  Aligned_cols=261  Identities=18%  Similarity=0.202  Sum_probs=200.5

Q ss_pred             cccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCC--
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENL--  268 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l--  268 (588)
                      +..++|++.+.||+|+||+||+|.+.  ++.||||++...     . .            ..+.+.+|+.+++.+...  
T Consensus        34 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-----~-~------------~~~~~~~E~~~l~~l~~~~~   95 (397)
T 1wak_A           34 LFNGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA-----E-H------------YTETALDEIRLLKSVRNSDP   95 (397)
T ss_dssp             EETTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-----H-H------------HHHHHHHHHHHHHHHHHSCT
T ss_pred             hcCCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC-----C-c------------chHHHHHHHHHHHHHhhcCC
Confidence            33488999999999999999999886  889999998421     0 0            123456788888887422  


Q ss_pred             --CCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhc-CCCCHHHHHHH
Q psy4039         269 --PPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERC-AQLSMHERVLL  345 (588)
Q Consensus       269 --~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~-~~l~~~~~~~i  345 (588)
                        ..||||+++++++....                        .....+++||||++++|.+++.... ..+++..++.+
T Consensus        96 ~~~~~~~iv~~~~~~~~~~------------------------~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~i  151 (397)
T 1wak_A           96 NDPNREMVVQLLDDFKISG------------------------VNGTHICMVFEVLGHHLLKWIIKSNYQGLPLPCVKKI  151 (397)
T ss_dssp             TCGGGGGBCCEEEEEEEEE------------------------TTEEEEEEEECCCCCBHHHHHHHTTTSCCCHHHHHHH
T ss_pred             CCCCcceeeeeecceeecC------------------------CCCceEEEEEeccCccHHHHHHhcccCCCCHHHHHHH
Confidence              13889999999987421                        1123599999999988888887653 46999999999


Q ss_pred             HHHHHHHHHHHHhC-CceeccCCCCcEEEcCCCC--------------------------------------------CC
Q psy4039         346 FTQLLEGVTHLNMH-RTAHRDLKSDNILLDCSED--------------------------------------------NT  380 (588)
Q Consensus       346 ~~ql~~gL~yLH~~-~IvHrDLKp~NILld~~~~--------------------------------------------~~  380 (588)
                      +.||+.||.|||++ ||+||||||+|||++.+..                                            ..
T Consensus       152 ~~qi~~aL~~lH~~~givHrDikp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (397)
T 1wak_A          152 IQQVLQGLDYLHTKCRIIHTDIKPENILLSVNEQYIRRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAE  231 (397)
T ss_dssp             HHHHHHHHHHHHHTTCEECCCCSGGGEEECCCHHHHHHHHHHHC---------------------CCTTSCCTTSGGGGG
T ss_pred             HHHHHHHHHHHHHhCCEecCCCCHHHeeEeccchhhhhhhhhhHHHhhcCCCCCCCCccccCCccccccccccccccccc
Confidence            99999999999998 9999999999999986520                                            00


Q ss_pred             CCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCcccc
Q psy4039         381 CPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSA  460 (588)
Q Consensus       381 ~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~  460 (588)
                      ...+||+|||+|+......        ....||+.|+|||++.+..      ++.++|||||||++|||++|+.||....
T Consensus       232 ~~~~kl~DfG~a~~~~~~~--------~~~~gt~~y~aPE~~~~~~------~~~~~DiwslG~il~elltg~~pf~~~~  297 (397)
T 1wak_A          232 KLKVKIADLGNACWVHKHF--------TEDIQTRQYRSLEVLIGSG------YNTPADIWSTACMAFELATGDYLFEPHS  297 (397)
T ss_dssp             GCCEEECCGGGCEETTBCS--------CSCCSCGGGCCHHHHHTSC------CCTHHHHHHHHHHHHHHHHSSCSCCCCC
T ss_pred             ccceEeccccccccccccC--------ccCCCCCcccCChhhcCCC------CCcHHHHHHHHHHHHHHhhCCCCCCCCc
Confidence            1379999999998754321        1457999999999998765      4578999999999999999999996532


Q ss_pred             ccccc--------------------------cc------c------------------ccCCCCCCccHHHHHHHHHhhh
Q psy4039         461 RNTDY--------------------------EV------N------------------ALPQLNTNVPEVMRRLVAKLLE  490 (588)
Q Consensus       461 ~~~~~--------------------------~~------~------------------~~~~~~~~~~~~l~~Li~~~L~  490 (588)
                      .....                          ..      .                  .....+..+++++.+||.+||+
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~  377 (397)
T 1wak_A          298 GEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLE  377 (397)
T ss_dssp             CSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSSCCCCCCCCHHHHHHHTSCCCHHHHHHHHHHHGGGGC
T ss_pred             ccccCchHHHHHHHHHhcCCCChHHhhcccccccccCCccccccccccCCcchhHhhhhhcccchhhHHHHHHHHHHHhc
Confidence            11000                          00      0                  0001223346778999999999


Q ss_pred             hCCCCCCCHHHHHHHHhhhhhcCCcccc
Q psy4039         491 NDPSDRPSAELAATVCQLYLWAPKHWLY  518 (588)
Q Consensus       491 ~dP~~Rps~~e~l~~L~~~~~~~h~w~~  518 (588)
                      .||++|||++++++         ||||+
T Consensus       378 ~dP~~Rpt~~e~l~---------hp~~~  396 (397)
T 1wak_A          378 LIPEKRATAAECLR---------HPWLN  396 (397)
T ss_dssp             SSGGGSCCHHHHHT---------SGGGG
T ss_pred             cChhhcCCHHHHhh---------Ccccc
Confidence            99999999999999         99985

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=100.00  E-value=2.5e-42  Score=352.31  Aligned_cols=262  Identities=22%  Similarity=0.240  Sum_probs=206.3

Q ss_pred             CCccccccCCeEEee-eecccCceeEEEEEEC----CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHH
Q psy4039         188 PDVDDVKVDDIQIGK-FIAKGTNAVVYEATFR----GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLM  262 (588)
Q Consensus       188 ~~~~~i~~~~~~~~~-~IG~G~fG~Vy~a~~~----g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il  262 (588)
                      +.+..+..++|.+.+ .||+|+||.||+|.+.    +..||||++......               ....+.+.+|+.++
T Consensus         8 ~~~~~~~~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~---------------~~~~~~~~~e~~~l   72 (291)
T 1xbb_A            8 PKEVYLDRKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEAND---------------PALKDELLAEANVM   72 (291)
T ss_dssp             ---CBCCGGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC--------------------CHHHHHHHHHHHHH
T ss_pred             cceeeecchhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccC---------------HHHHHHHHHHHHHH
Confidence            344556668999998 9999999999999663    678999998532111               01234567799999


Q ss_pred             hhhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHH
Q psy4039         263 NSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHE  341 (588)
Q Consensus       263 ~~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~  341 (588)
                      +.+    +||||+++++++...                             ..++||||+ +++|.+++.... .+++..
T Consensus        73 ~~l----~h~~i~~~~~~~~~~-----------------------------~~~lv~e~~~~~~L~~~l~~~~-~~~~~~  118 (291)
T 1xbb_A           73 QQL----DNPYIVRMIGICEAE-----------------------------SWMLVMEMAELGPLNKYLQQNR-HVKDKN  118 (291)
T ss_dssp             HTC----CCTTBCCEEEEEESS-----------------------------SEEEEEECCTTEEHHHHHHHCT-TCCHHH
T ss_pred             HhC----CCCCEEEEEEEECCC-----------------------------CcEEEEEeCCCCCHHHHHHhCc-CCCHHH
Confidence            887    899999999998432                             389999999 579999998754 799999


Q ss_pred             HHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhH
Q psy4039         342 RVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEV  421 (588)
Q Consensus       342 ~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~  421 (588)
                      ++.++.|++.||.|||++||+||||||+|||++.+     +.+||+|||+++.........  .......||+.|+|||+
T Consensus       119 ~~~i~~qi~~~l~~LH~~~i~H~dikp~Nil~~~~-----~~~kl~Dfg~~~~~~~~~~~~--~~~~~~~~~~~y~aPE~  191 (291)
T 1xbb_A          119 IIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQ-----HYAKISDFGLSKALRADENYY--KAQTHGKWPVKWYAPEC  191 (291)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEET-----TEEEECCCTTCEECCTTCSEE--EC----CCCGGGCCHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCeEcCCCCcceEEEeCC-----CcEEEccCCcceeeccCCCcc--cccccCCCCceeeChHH
Confidence            99999999999999999999999999999999988     799999999998765432211  11123457889999999


Q ss_pred             HhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCC
Q psy4039         422 ALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRP  497 (588)
Q Consensus       422 l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rp  497 (588)
                      +.+..      ++.++||||||+++|||++ |..||.+......   ......+..+..+|+++.+++.+||+.||.+||
T Consensus       192 ~~~~~------~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rp  265 (291)
T 1xbb_A          192 INYYK------FSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAGCPREMYDLMNLCWTYDVENRP  265 (291)
T ss_dssp             HHHCE------EEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSTTTSC
T ss_pred             hccCC------CChhhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCChhhCc
Confidence            97664      3467999999999999999 9999976432211   122334456778999999999999999999999


Q ss_pred             CHHHHHHHHhhhhh
Q psy4039         498 SAELAATVCQLYLW  511 (588)
Q Consensus       498 s~~e~l~~L~~~~~  511 (588)
                      |++++++.|+.+++
T Consensus       266 s~~~l~~~L~~~~~  279 (291)
T 1xbb_A          266 GFAAVELRLRNYYY  279 (291)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999887764

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=100.00  E-value=7.2e-42  Score=352.18  Aligned_cols=252  Identities=21%  Similarity=0.274  Sum_probs=200.6

Q ss_pred             ccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCC
Q psy4039         194 KVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPH  271 (588)
Q Consensus       194 ~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~H  271 (588)
                      ..++|++.+.||+|+||.||+|.+.  ++.||||.+....                   ..+.+.+|+.+++.+    +|
T Consensus        27 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~-------------------~~~~~~~e~~~l~~l----~h   83 (314)
T 3com_A           27 PEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES-------------------DLQEIIKEISIMQQC----DS   83 (314)
T ss_dssp             ---CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS-------------------CCHHHHHHHHHHHTC----CC
T ss_pred             chhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH-------------------HHHHHHHHHHHHHhC----CC
Confidence            3478999999999999999999997  8899999985321                   224466799999887    99


Q ss_pred             CceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCC-CcHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy4039         272 PNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYN-TDLRNYLRERCAQLSMHERVLLFTQLL  350 (588)
Q Consensus       272 pNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~-gsL~~~L~~~~~~l~~~~~~~i~~ql~  350 (588)
                      |||+++++++.+..                            ..++||||++ ++|.+++......+++..++.++.|++
T Consensus        84 ~~i~~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~  135 (314)
T 3com_A           84 PHVVKYYGSYFKNT----------------------------DLWIVMEYCGAGSVSDIIRLRNKTLTEDEIATILQSTL  135 (314)
T ss_dssp             TTBCCEEEEEEETT----------------------------EEEEEEECCTTEEHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred             CCCccEEEEEEeCC----------------------------EEEEEeecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence            99999999987632                            4899999995 699999986666899999999999999


Q ss_pred             HHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCcc
Q psy4039         351 EGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFS  430 (588)
Q Consensus       351 ~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~  430 (588)
                      .||.|||++||+||||||+||+++.+     +.+||+|||++........     ......||+.|+|||++.+..    
T Consensus       136 ~~l~~lH~~~i~H~dl~p~Nil~~~~-----~~~kl~dfg~~~~~~~~~~-----~~~~~~~~~~y~aPE~~~~~~----  201 (314)
T 3com_A          136 KGLEYLHFMRKIHRDIKAGNILLNTE-----GHAKLADFGVAGQLTDTMA-----KRNTVIGTPFWMAPEVIQEIG----  201 (314)
T ss_dssp             HHHHHHHHTTEECCCCSGGGEEECTT-----CCEEECCCTTCEECBTTBS-----CBCCCCSCGGGCCHHHHSSSC----
T ss_pred             HHHHHHHhCCCcCCCcCHHHEEECCC-----CCEEEeecccchhhhhhcc-----ccCccCCCCCccChhhcCCCC----
Confidence            99999999999999999999999987     7899999999987644221     112456999999999997654    


Q ss_pred             CCCCCcCchhhHHHHHHHHhcCCCCCcccccccccc---ccc--cCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHH
Q psy4039         431 FVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE---VNA--LPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATV  505 (588)
Q Consensus       431 ~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~---~~~--~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~  505 (588)
                        ++.++|||||||++|||++|..||..........   ...  ....+..+++++.++|.+||+.||.+|||++++++ 
T Consensus       202 --~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rpt~~~ll~-  278 (314)
T 3com_A          202 --YNCVADIWSLGITAIEMAEGKPPYADIHPMRAIFMIPTNPPPTFRKPELWSDNFTDFVKQCLVKSPEQRATATQLLQ-  278 (314)
T ss_dssp             --BCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSSGGGSCHHHHHHHHHHTCSCTTTSCCHHHHTT-
T ss_pred             --CCccccHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhcCCCcccCCcccCCHHHHHHHHHHccCChhhCcCHHHHHh-
Confidence              4578999999999999999999997632211110   011  11223457899999999999999999999999988 


Q ss_pred             HhhhhhcCCccccCCC
Q psy4039         506 CQLYLWAPKHWLYGAT  521 (588)
Q Consensus       506 L~~~~~~~h~w~~~~~  521 (588)
                              |||++...
T Consensus       279 --------~~~~~~~~  286 (314)
T 3com_A          279 --------HPFVRSAK  286 (314)
T ss_dssp             --------SHHHHTCC
T ss_pred             --------CHHHhcCC
Confidence                    99998543

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=100.00  E-value=3e-42  Score=353.52  Aligned_cols=251  Identities=21%  Similarity=0.265  Sum_probs=206.6

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      +.|++.+.||+|+||.||+|.+.  ++.||||++.......                ..+.+.+|+.+++.+    +|||
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~----------------~~~~~~~e~~~l~~l----~h~~   81 (303)
T 3a7i_A           22 ELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAED----------------EIEDIQQEITVLSQC----DSPY   81 (303)
T ss_dssp             GTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCST----------------THHHHHHHHHHHHHC----CCTT
T ss_pred             HHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHH----------------HHHHHHHHHHHHHhC----CCCC
Confidence            67999999999999999999986  7899999996432211                224566789999887    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++++.+..                            ..++||||+ +++|.+++...  .+++..+..++.|++.|
T Consensus        82 i~~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~qi~~~  131 (303)
T 3a7i_A           82 VTKYYGSYLKDT----------------------------KLWIIMEYLGGGSALDLLEPG--PLDETQIATILREILKG  131 (303)
T ss_dssp             BCCEEEEEEETT----------------------------EEEEEEECCTTEEHHHHHTTS--CCCHHHHHHHHHHHHHH
T ss_pred             EeEEEEEEecCC----------------------------eEEEEEEeCCCCcHHHHHhcC--CCCHHHHHHHHHHHHHH
Confidence            999999988632                            489999999 56999998754  89999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||++||+||||||+|||++.+     +.+||+|||++........     ......||+.|+|||++.+..      
T Consensus       132 l~~lH~~~i~H~dl~p~Nil~~~~-----~~~kl~Dfg~~~~~~~~~~-----~~~~~~~~~~y~aPE~~~~~~------  195 (303)
T 3a7i_A          132 LDYLHSEKKIHRDIKAANVLLSEH-----GEVKLADFGVAGQLTDTQI-----KRNTFVGTPFWMAPEVIKQSA------  195 (303)
T ss_dssp             HHHHHHTTEECCCCSGGGEEECTT-----SCEEECCCTTCEECBTTBC-----CBCCCCSCGGGCCHHHHTTCC------
T ss_pred             HHHHHHCCCccCCCChheEEECCC-----CCEEEeecccceecCcccc-----ccCccCCCcCccCHHHHhcCC------
Confidence            999999999999999999999987     7899999999987654221     112457999999999997654      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhh
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLY  509 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~  509 (588)
                      ++.++|||||||++|||++|..||........   ......+.++..+++.+.+++.+||+.||.+|||++++++     
T Consensus       196 ~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~-----  270 (303)
T 3a7i_A          196 YDSKADIWSLGITAIELARGEPPHSELHPMKVLFLIPKNNPPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELLK-----  270 (303)
T ss_dssp             BCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCCSSCCHHHHHHHHHHCCSSGGGSCCHHHHTT-----
T ss_pred             CCchhhhHHHHHHHHHHccCCCCCCCcCHHHHHHHhhcCCCCCCccccCHHHHHHHHHHcCCChhhCcCHHHHhh-----
Confidence            45789999999999999999999976422111   1122334566788999999999999999999999999998     


Q ss_pred             hhcCCccccCCC
Q psy4039         510 LWAPKHWLYGAT  521 (588)
Q Consensus       510 ~~~~h~w~~~~~  521 (588)
                          |||+....
T Consensus       271 ----~~~~~~~~  278 (303)
T 3a7i_A          271 ----HKFILRNA  278 (303)
T ss_dssp             ----CHHHHHHC
T ss_pred             ----ChhhhcCC
Confidence                99997433

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=4e-42  Score=358.56  Aligned_cols=266  Identities=20%  Similarity=0.296  Sum_probs=204.1

Q ss_pred             CCCccccccCCeEEeeeecccCceeEEEEEEC------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHH
Q psy4039         187 LPDVDDVKVDDIQIGKFIAKGTNAVVYEATFR------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDM  260 (588)
Q Consensus       187 ~~~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~  260 (588)
                      ....+++..++|.+.+.||+|+||.||+|.+.      +..||||++....   ..             .....+.+|+.
T Consensus        35 ~~~~~~i~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~---~~-------------~~~~~~~~E~~   98 (333)
T 1mqb_A           35 LKFTTEIHPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGY---TE-------------KQRVDFLGEAG   98 (333)
T ss_dssp             ---CCBCCTTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTC---CH-------------HHHHHHHHHHH
T ss_pred             hhccccCChHHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCC---CH-------------HHHHHHHHHHH
Confidence            34556778899999999999999999999886      2359999985321   11             01234667999


Q ss_pred             HHhhhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCH
Q psy4039         261 LMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSM  339 (588)
Q Consensus       261 il~~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~  339 (588)
                      +++.+    +||||+++++++.+..                            ..++||||+ +|+|.+++......+++
T Consensus        99 ~l~~l----~h~~iv~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~~~~~~  146 (333)
T 1mqb_A           99 IMGQF----SHHNIIRLEGVISKYK----------------------------PMMIITEYMENGALDKFLREKDGEFSV  146 (333)
T ss_dssp             HHHTC----CCTTBCCEEEEECSSS----------------------------SEEEEEECCTTEEHHHHHHHTTTCSCH
T ss_pred             HHHhC----CCCCCCcEEEEEecCC----------------------------CcEEEEeCCCCCcHHHHHHhCCCCCCH
Confidence            99887    8999999999987632                            389999999 56999999887668999


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccch
Q psy4039         340 HERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAP  419 (588)
Q Consensus       340 ~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~AP  419 (588)
                      .+++.++.||+.||.|||++||+||||||+|||++.+     +.+||+|||+++...........  .....||+.|+||
T Consensus       147 ~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~-----~~~kl~Dfg~~~~~~~~~~~~~~--~~~~~~~~~y~aP  219 (333)
T 1mqb_A          147 LQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNSN-----LVCKVSDFGLSRVLEDDPEATYT--TSGGKIPIRWTAP  219 (333)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTT-----CCEEECCCCC-------------------CCCGGGSCH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeeCCCCChheEEECCC-----CcEEECCCCcchhhccccccccc--cCCCCccccccCc
Confidence            9999999999999999999999999999999999987     89999999999876542221111  1134578899999


Q ss_pred             hHHhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCC
Q psy4039         420 EVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSD  495 (588)
Q Consensus       420 E~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~  495 (588)
                      |++.+..      ++.++|||||||++|||++ |+.||........   .......+.+..+++++.+++.+||+.||.+
T Consensus       220 E~~~~~~------~~~~~Di~slG~il~ellt~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~  293 (333)
T 1mqb_A          220 EAISYRK------FTSASDVWSFGIVMWEVMTYGERPYWELSNHEVMKAINDGFRLPTPMDCPSAIYQLMMQCWQQERAR  293 (333)
T ss_dssp             HHHHSCC------CCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCCCCCTTCBHHHHHHHHHHTCSSTTT
T ss_pred             hhcccCC------CCchhhhHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHCCCcCCCcccCCHHHHHHHHHHcCCChhh
Confidence            9997654      4568999999999999998 9999976422211   1122234456788999999999999999999


Q ss_pred             CCCHHHHHHHHhhhhhcC
Q psy4039         496 RPSAELAATVCQLYLWAP  513 (588)
Q Consensus       496 Rps~~e~l~~L~~~~~~~  513 (588)
                      ||+++++++.|+..+-.+
T Consensus       294 Rps~~~l~~~L~~~~~~~  311 (333)
T 1mqb_A          294 RPKFADIVSILDKLIRAP  311 (333)
T ss_dssp             SCCHHHHHHHHHHHHHSG
T ss_pred             CcCHHHHHHHHHHHHhcc
Confidence            999999999888766443

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=100.00  E-value=9.3e-43  Score=352.44  Aligned_cols=258  Identities=21%  Similarity=0.281  Sum_probs=206.6

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      .++|++.+.||+|+||.||+|.+.  ++.||||.+.......               ...+.+.+|+.+++.+    +||
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~---------------~~~~~~~~e~~~l~~l----~h~   65 (279)
T 2w5a_A            5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTE---------------AEKQMLVSEVNLLREL----KHP   65 (279)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCH---------------HHHHHHHHHHHHHHHC----CCT
T ss_pred             hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCH---------------HHHHHHHHHHHHHHhc----CCC
Confidence            489999999999999999999996  8899999996432211               0224566799999987    899


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc---CCCCHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC---AQLSMHERVLLFTQ  348 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~---~~l~~~~~~~i~~q  348 (588)
                      ||+++++++.+..                          ...+++||||+ +++|.+++....   ..+++..++.++.|
T Consensus        66 ~i~~~~~~~~~~~--------------------------~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~  119 (279)
T 2w5a_A           66 NIVRYYDRIIDRT--------------------------NTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQ  119 (279)
T ss_dssp             TBCCEEEEEEEGG--------------------------GTEEEEEEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred             CCCeEEEEEecCC--------------------------CceEEEEEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHH
Confidence            9999999886521                          22599999999 569999998642   34999999999999


Q ss_pred             HHHHHHHHHhCC-----ceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHh
Q psy4039         349 LLEGVTHLNMHR-----TAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVAL  423 (588)
Q Consensus       349 l~~gL~yLH~~~-----IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~  423 (588)
                      ++.||.|||+++     |+||||||+|||++.+     +.+||+|||+++........     .....||+.|+|||++.
T Consensus       120 i~~~l~~lH~~~~~~~~ivH~dl~p~NIl~~~~-----~~~kl~dfg~~~~~~~~~~~-----~~~~~~~~~y~aPE~~~  189 (279)
T 2w5a_A          120 LTLALKECHRRSDGGHTVLHRDLKPANVFLDGK-----QNVKLGDFGLARILNHDTSF-----AKTFVGTPYYMSPEQMN  189 (279)
T ss_dssp             HHHHHHHHHHHC------CCCCCSGGGEEECSS-----SCEEECCCCHHHHC---CHH-----HHHHHSCCTTCCHHHHH
T ss_pred             HHHHHHHHhcccCCCCeeEEeccchhhEEEcCC-----CCEEEecCchheeecccccc-----ccccCCCccccChHHhc
Confidence            999999999999     9999999999999987     78999999999876442211     11356899999999998


Q ss_pred             cCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccc---cccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHH
Q psy4039         424 ATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNT---DYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE  500 (588)
Q Consensus       424 ~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~---~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~  500 (588)
                      +..      ++.++||||||+++|||++|..||.......   .......+.++..+++++.++|.+||+.||.+|||++
T Consensus       190 ~~~------~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~  263 (279)
T 2w5a_A          190 RMS------YNEKSDIWSLGCLLYELCALMPPFTAFSQKELAGKIREGKFRRIPYRYSDELNEIITRMLNLKDYHRPSVE  263 (279)
T ss_dssp             CC-------CCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             cCC------CCchhhHHHHHHHHHHHHHCCCCCcccCHHHHHHHHhhcccccCCcccCHHHHHHHHHHcCCCcccCCCHH
Confidence            764      4568999999999999999999997643211   1122334456678999999999999999999999999


Q ss_pred             HHHHHHhhhhhcCCccccCCCC
Q psy4039         501 LAATVCQLYLWAPKHWLYGATP  522 (588)
Q Consensus       501 e~l~~L~~~~~~~h~w~~~~~~  522 (588)
                      ++++         |+|+.+..+
T Consensus       264 ~ll~---------~~~~~~~~~  276 (279)
T 2w5a_A          264 EILE---------NPLILEHHH  276 (279)
T ss_dssp             HHHT---------STTCCGGGS
T ss_pred             HHHh---------Chhhhhhcc
Confidence            9999         999875443

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=100.00  E-value=2.7e-42  Score=349.45  Aligned_cols=254  Identities=21%  Similarity=0.224  Sum_probs=201.4

Q ss_pred             CCccccccCCeEEeeeecccCceeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcC
Q psy4039         188 PDVDDVKVDDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVEN  267 (588)
Q Consensus       188 ~~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~  267 (588)
                      ...+.+..++|++.+.||+|+||.||+|.+.+..||||++....                   ..+.+.+|+.+++.+  
T Consensus        13 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~-------------------~~~~~~~E~~~l~~l--   71 (278)
T 1byg_A           13 RSGWALNMKELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIKNDA-------------------TAQAFLAEASVMTQL--   71 (278)
T ss_dssp             --CCBCCGGGEEEEEEEEECSSCEEEEEEETTEEEEEEECCCCC---------------------HHHHHTHHHHTTC--
T ss_pred             hccccCChhhceEEeEEecCCCceEEEEEEcCCEEEEEEecchh-------------------HHHHHHHHHHHHHhC--
Confidence            45567888999999999999999999999999999999985311                   223466789999887  


Q ss_pred             CCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCC-CcHHHHHHHhc-CCCCHHHHHHH
Q psy4039         268 LPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYN-TDLRNYLRERC-AQLSMHERVLL  345 (588)
Q Consensus       268 l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~-gsL~~~L~~~~-~~l~~~~~~~i  345 (588)
                        +||||+++++++.+..                           ...++||||+. ++|.+++.... ..+++..++.+
T Consensus        72 --~h~~iv~~~~~~~~~~---------------------------~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~  122 (278)
T 1byg_A           72 --RHSNLVQLLGVIVEEK---------------------------GGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKF  122 (278)
T ss_dssp             --CCTTBCCEEEEECCC-----------------------------CCEEEECCCTTEEHHHHHHHHHHHHCCHHHHHHH
T ss_pred             --CCCCEeeEEEEEEcCC---------------------------CceEEEEecCCCCCHHHHHHhcccccCCHHHHHHH
Confidence              8999999999875421                           13899999995 69999998653 23899999999


Q ss_pred             HHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcC
Q psy4039         346 FTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALAT  425 (588)
Q Consensus       346 ~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~  425 (588)
                      +.|++.||.|||++||+||||||+||+++.+     +.+||+|||+++......        ....+|+.|+|||++.+.
T Consensus       123 ~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~-----~~~~l~Dfg~~~~~~~~~--------~~~~~~~~y~aPE~~~~~  189 (278)
T 1byg_A          123 SLDVCEAMEYLEGNNFVHRDLAARNVLVSED-----NVAKVSDFGLTKEASSTQ--------DTGKLPVKWTAPEALREK  189 (278)
T ss_dssp             HHHHHHHHHHHHHTTCCCSCCSGGGEEECTT-----SCEEECCCCC--------------------CCTTTSCHHHHHHC
T ss_pred             HHHHHHHHHHHHhCCccccCCCcceEEEeCC-----CcEEEeeccccccccccc--------cCCCccccccCHHHhCCC
Confidence            9999999999999999999999999999987     799999999987644321        134578899999999876


Q ss_pred             CCCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHH
Q psy4039         426 PGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAEL  501 (588)
Q Consensus       426 ~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e  501 (588)
                      .      ++.++||||||+++|||++ |+.||........   ......+..+..+|+++.+++.+||+.||.+|||+++
T Consensus       190 ~------~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~  263 (278)
T 1byg_A          190 K------FSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQ  263 (278)
T ss_dssp             C------CCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGGHHHHHTTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             C------CCchhcHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHhcCChhhCCCHHH
Confidence            5      4568999999999999998 9999976432221   1122334566789999999999999999999999999


Q ss_pred             HHHHHhhhh
Q psy4039         502 AATVCQLYL  510 (588)
Q Consensus       502 ~l~~L~~~~  510 (588)
                      +++.|+...
T Consensus       264 l~~~L~~i~  272 (278)
T 1byg_A          264 LREQLEHIK  272 (278)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999887543

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=100.00  E-value=9e-43  Score=362.60  Aligned_cols=256  Identities=19%  Similarity=0.223  Sum_probs=197.1

Q ss_pred             ccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCC
Q psy4039         192 DVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLP  269 (588)
Q Consensus       192 ~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~  269 (588)
                      ...+++|++.+.||+|+||.||+|.+.  ++.||||++.......   .            ..+.+.+|+.+++.+    
T Consensus        21 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~---~------------~~~~~~~E~~~l~~l----   81 (331)
T 4aaa_A           21 FQSMEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDK---M------------VKKIAMREIKLLKQL----   81 (331)
T ss_dssp             CBCGGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCH---H------------HHHHHHHHHHHHHHC----
T ss_pred             hhhhhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCch---H------------HHHHHHHHHHHHhhC----
Confidence            344589999999999999999999997  8899999985432111   0            123455799999988    


Q ss_pred             CCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCC-cHHHHHHHhcCCCCHHHHHHHHHH
Q psy4039         270 PHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNT-DLRNYLRERCAQLSMHERVLLFTQ  348 (588)
Q Consensus       270 ~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~g-sL~~~L~~~~~~l~~~~~~~i~~q  348 (588)
                      +||||+++++++.+..                            ..++||||+++ +|..++... ..+++..+..++.|
T Consensus        82 ~h~~iv~~~~~~~~~~----------------------------~~~lv~e~~~~~~l~~~~~~~-~~~~~~~~~~~~~q  132 (331)
T 4aaa_A           82 RHENLVNLLEVCKKKK----------------------------RWYLVFEFVDHTILDDLELFP-NGLDYQVVQKYLFQ  132 (331)
T ss_dssp             CCTTBCCEEEEEEETT----------------------------EEEEEEECCSEEHHHHHHHST-TCCCHHHHHHHHHH
T ss_pred             CCCCEeeEEEEeecCC----------------------------EEEEEEecCCcchHHHHHhhc-cCCCHHHHHHHHHH
Confidence            8999999999998632                            48999999965 566555433 37999999999999


Q ss_pred             HHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCC
Q psy4039         349 LLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGL  428 (588)
Q Consensus       349 l~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~  428 (588)
                      |+.||.|||++||+||||||+|||++.+     +.+||+|||+++........     .....||+.|+|||++.+... 
T Consensus       133 i~~~l~~LH~~~ivH~dlkp~Nil~~~~-----~~~kl~Dfg~~~~~~~~~~~-----~~~~~~t~~y~aPE~~~~~~~-  201 (331)
T 4aaa_A          133 IINGIGFCHSHNIIHRDIKPENILVSQS-----GVVKLCDFGFARTLAAPGEV-----YDDEVATRWYRAPELLVGDVK-  201 (331)
T ss_dssp             HHHHHHHHHHTTCCCCCCCGGGEEECTT-----SCEEECCCTTC-----------------CCCCCTTCCHHHHTTCTT-
T ss_pred             HHHHHHHHHHCCEEccCcChheEEEcCC-----CcEEEEeCCCceeecCCccc-----cCCCcCCccccCcccccCCCC-
Confidence            9999999999999999999999999987     79999999999765442111     114568999999999976421 


Q ss_pred             ccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccc------------------------cccccCC---------CCC
Q psy4039         429 FSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY------------------------EVNALPQ---------LNT  475 (588)
Q Consensus       429 ~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~------------------------~~~~~~~---------~~~  475 (588)
                          ++.++|||||||++|||++|+.||.+.......                        .....+.         ...
T Consensus       202 ----~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (331)
T 4aaa_A          202 ----YGKAVDVWAIGCLVTEMFMGEPLFPGDSDIDQLYHIMMCLGNLIPRHQELFNKNPVFAGVRLPEIKEREPLERRYP  277 (331)
T ss_dssp             ----CCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHHCGGGTTCCCCCCSSCCCHHHHST
T ss_pred             ----cchHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCChhhhhHhhhccccccccCccccccchhhhccc
Confidence                457899999999999999999999763211100                        0000111         123


Q ss_pred             CccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccC
Q psy4039         476 NVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       476 ~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~  519 (588)
                      .+++++.+||.+||+.||++|||++++++         |||++.
T Consensus       278 ~~~~~l~~li~~~L~~dP~~Rpt~~ell~---------hp~f~~  312 (331)
T 4aaa_A          278 KLSEVVIDLAKKCLHIDPDKRPFCAELLH---------HDFFQM  312 (331)
T ss_dssp             TSCHHHHHHHHHHTCSSGGGSCCGGGGGG---------SHHHHG
T ss_pred             chhHHHHHHHHHHhccCcccCCCHHHHhc---------Cchhcc
Confidence            57899999999999999999999999988         999964

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=100.00  E-value=1.8e-42  Score=362.68  Aligned_cols=274  Identities=13%  Similarity=0.116  Sum_probs=202.2

Q ss_pred             cccCCeEEeeeecccCceeEEEEEEC-----CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcC
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFR-----GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVEN  267 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~-----g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~  267 (588)
                      +..++|++.+.||+|+||.||+|.+.     +..||||++......   ...-..+.   .......+.+|+.+++.+  
T Consensus        34 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~---~~~e~~~~---~~~~~~~~~~e~~~~~~l--  105 (345)
T 2v62_A           34 MEGNQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGP---LFSELKFY---QRVAKKDCIKKWIERKQL--  105 (345)
T ss_dssp             TTSCEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CH---HHHHHHHH---HHHCCHHHHHHHHHHHTC--
T ss_pred             ccCceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcc---hHHHHHHH---HHHhhhHHHHHHHhhccc--
Confidence            34478999999999999999999995     578999998643211   00001111   112344566788888887  


Q ss_pred             CCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHH
Q psy4039         268 LPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFT  347 (588)
Q Consensus       268 l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~  347 (588)
                        +||||+++++++.+..                        ......|+||||++++|.+++...+ .+++.+++.++.
T Consensus       106 --~h~ni~~~~~~~~~~~------------------------~~~~~~~lv~e~~~~~L~~~l~~~~-~~~~~~~~~i~~  158 (345)
T 2v62_A          106 --DYLGIPLFYGSGLTEF------------------------KGRSYRFMVMERLGIDLQKISGQNG-TFKKSTVLQLGI  158 (345)
T ss_dssp             --SCCCCCCEEEEEEEES------------------------SSCEEEEEEEECEEEEHHHHCBGGG-BCCHHHHHHHHH
T ss_pred             --cccCcceeeccccccc------------------------CCCcEEEEEEeccCCCHHHHHHhcC-CCCHHHHHHHHH
Confidence              9999999999988731                        1233699999999889999998765 899999999999


Q ss_pred             HHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccc--cccccccccCCccccchhHHhcC
Q psy4039         348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQ--YSSADIELGGNVALMAPEVALAT  425 (588)
Q Consensus       348 ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~--~~~~~~~~~GT~~Y~APE~l~~~  425 (588)
                      ||+.||.|||++||+||||||+|||++.+..   +.+||+|||+|+.........  .........||+.|+|||++.+.
T Consensus       159 qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~---~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  235 (345)
T 2v62_A          159 RMLDVLEYIHENEYVHGDIKAANLLLGYKNP---DQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGV  235 (345)
T ss_dssp             HHHHHHHHHHHTTEECSCCSGGGEEEESSST---TSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTC
T ss_pred             HHHHHHHHHHhCCeeCCCcCHHHEEEccCCC---CcEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCC
Confidence            9999999999999999999999999987722   389999999998764421110  11111346799999999999876


Q ss_pred             CCCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccc----ccccccCCCC---------CCccHHHHHHHHHhhhhC
Q psy4039         426 PGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD----YEVNALPQLN---------TNVPEVMRRLVAKLLEND  492 (588)
Q Consensus       426 ~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~----~~~~~~~~~~---------~~~~~~l~~Li~~~L~~d  492 (588)
                      .      ++.++|||||||++|||++|+.||.+......    ......+.++         ..+|+++.++|.+||+.|
T Consensus       236 ~------~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~d  309 (345)
T 2v62_A          236 A------LSRRSDVEILGYCMLRWLCGKLPWEQNLKDPVAVQTAKTNLLDELPQSVLKWAPSGSSCCEIAQFLVCAHSLA  309 (345)
T ss_dssp             C------CCHHHHHHHHHHHHHHHHHSSCTTGGGTTCHHHHHHHHHHHHHTTTHHHHHHSCTTSCCHHHHHHHHHHHTCC
T ss_pred             C------CCchhhHHHHHHHHHHHHhCCCCccccccccHHHHHHHHhhcccccHHHHhhccccccHHHHHHHHHHHhhcC
Confidence            4      45789999999999999999999965321111    0001111111         278899999999999999


Q ss_pred             CCCCCCHHHHHHHHhhhh
Q psy4039         493 PSDRPSAELAATVCQLYL  510 (588)
Q Consensus       493 P~~Rps~~e~l~~L~~~~  510 (588)
                      |++|||++++++.|+...
T Consensus       310 p~~Rps~~~l~~~L~~~~  327 (345)
T 2v62_A          310 YDEKPNYQALKKILNPHG  327 (345)
T ss_dssp             TTCCCCHHHHHHHHCTTC
T ss_pred             cccCCCHHHHHHHHhccC
Confidence            999999999999888543

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.8e-42  Score=351.20  Aligned_cols=258  Identities=19%  Similarity=0.224  Sum_probs=207.8

Q ss_pred             cccccCCeEEee-eecccCceeEEEEEEC----CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhh
Q psy4039         191 DDVKVDDIQIGK-FIAKGTNAVVYEATFR----GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSV  265 (588)
Q Consensus       191 ~~i~~~~~~~~~-~IG~G~fG~Vy~a~~~----g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l  265 (588)
                      +.+..++|.+.+ .||+|+||.||+|.+.    +..||||++....   ..             ...+.+.+|+.+++.+
T Consensus         4 ~~~~~~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~---~~-------------~~~~~~~~E~~~l~~l   67 (287)
T 1u59_A            4 LFLKRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGT---EK-------------ADTEEMMREAQIMHQL   67 (287)
T ss_dssp             CBCCGGGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSC---CH-------------HHHHHHHHHHHHHHHC
T ss_pred             ccccHHHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCcc---ch-------------hHHHHHHHHHHHHHhC
Confidence            445568888887 9999999999999874    7789999995421   10             0223466799999987


Q ss_pred             cCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHH
Q psy4039         266 ENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVL  344 (588)
Q Consensus       266 ~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~  344 (588)
                          +||||+++++++.+.                             ..++||||+ +++|.+++......+++..++.
T Consensus        68 ----~h~~i~~~~~~~~~~-----------------------------~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~  114 (287)
T 1u59_A           68 ----DNPYIVRLIGVCQAE-----------------------------ALMLVMEMAGGGPLHKFLVGKREEIPVSNVAE  114 (287)
T ss_dssp             ----CCTTBCCEEEEEESS-----------------------------SEEEEEECCTTEEHHHHHTTCTTTSCHHHHHH
T ss_pred             ----CCCCEeEEEEEecCC-----------------------------CcEEEEEeCCCCCHHHHHHhCCccCCHHHHHH
Confidence                899999999998542                             289999999 5799999976655799999999


Q ss_pred             HHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhc
Q psy4039         345 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALA  424 (588)
Q Consensus       345 i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~  424 (588)
                      ++.|++.||.|||++||+||||||+|||++.+     +.+||+|||+++.........  .......||+.|+|||++.+
T Consensus       115 ~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~-----~~~kl~Dfg~~~~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~  187 (287)
T 1u59_A          115 LLHQVSMGMKYLEEKNFVHRDLAARNVLLVNR-----HYAKISDFGLSKALGADDSYY--TARSAGKWPLKWYAPECINF  187 (287)
T ss_dssp             HHHHHHHHHHHHHHTTEECCCCSGGGEEEEET-----TEEEECCCTTCEECTTCSCEE--CCCCSSCCCGGGCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCEeeCCCchheEEEcCC-----CCEEECcccceeeeccCccee--eccccccccccccCHHHhcc
Confidence            99999999999999999999999999999987     799999999998765432211  11123457899999999976


Q ss_pred             CCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHH
Q psy4039         425 TPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE  500 (588)
Q Consensus       425 ~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~  500 (588)
                      ..      ++.++|||||||++|||++ |+.||........   ......+..+..+|+++.++|.+||+.||.+||+++
T Consensus       188 ~~------~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~  261 (287)
T 1u59_A          188 RK------FSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKRMECPPECPPELYALMSDCWIYKWEDRPDFL  261 (287)
T ss_dssp             CE------ECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHH
T ss_pred             CC------CCchhhHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHhcCCcCCCCCCcCHHHHHHHHHHcCCChhhCcCHH
Confidence            54      4468999999999999998 9999976432211   122334556778999999999999999999999999


Q ss_pred             HHHHHHhhhh
Q psy4039         501 LAATVCQLYL  510 (588)
Q Consensus       501 e~l~~L~~~~  510 (588)
                      ++++.|+..+
T Consensus       262 ~l~~~l~~~~  271 (287)
T 1u59_A          262 TVEQRMRACY  271 (287)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999887654

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=100.00  E-value=1.2e-42  Score=361.51  Aligned_cols=255  Identities=24%  Similarity=0.397  Sum_probs=200.5

Q ss_pred             CCeEEe-eeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         196 DDIQIG-KFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       196 ~~~~~~-~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      +.|.+. +.||+|+||.||+|.+.  ++.||||++.......               .....+.+|+.+++.+   ..||
T Consensus        28 ~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~---------------~~~~~~~~e~~~l~~l---~~~~   89 (327)
T 3lm5_A           28 NFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQ---------------DCRAEILHEIAVLELA---KSCP   89 (327)
T ss_dssp             HHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTE---------------ECHHHHHHHHHHHHHT---TTCT
T ss_pred             hEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcch---------------HHHHHHHHHHHHHHhc---cCCC
Confidence            567776 89999999999999997  8899999986422111               1234566788888887   4789


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh-cCCCCHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER-CAQLSMHERVLLFTQLL  350 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~-~~~l~~~~~~~i~~ql~  350 (588)
                      ||+++++++.+..                            .+++||||+ +|+|.+++... ...+++.+++.++.||+
T Consensus        90 ~iv~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~  141 (327)
T 3lm5_A           90 RVINLHEVYENTS----------------------------EIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQIL  141 (327)
T ss_dssp             TBCCEEEEEECSS----------------------------EEEEEEECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHH
T ss_pred             CEEEEEEEEEeCC----------------------------eEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHH
Confidence            9999999987632                            489999999 57999988643 34799999999999999


Q ss_pred             HHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCcc
Q psy4039         351 EGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFS  430 (588)
Q Consensus       351 ~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~  430 (588)
                      .||.|||++||+||||||+|||++....  .+.+||+|||+++........      ....||+.|+|||++.+..    
T Consensus       142 ~~L~~LH~~givH~Dikp~NIl~~~~~~--~~~~kL~Dfg~a~~~~~~~~~------~~~~gt~~y~aPE~~~~~~----  209 (327)
T 3lm5_A          142 EGVYYLHQNNIVHLDLKPQNILLSSIYP--LGDIKIVDFGMSRKIGHACEL------REIMGTPEYLAPEILNYDP----  209 (327)
T ss_dssp             HHHHHHHHTTEECSCCCGGGEEESCBTT--BCCEEECCGGGCEEC---------------CCCGGGCCHHHHTTCC----
T ss_pred             HHHHHHHHCCeecCcCChHHEEEecCCC--CCcEEEeeCccccccCCcccc------ccccCCcCccCCeeecCCC----
Confidence            9999999999999999999999987211  168999999999876542211      2457999999999997665    


Q ss_pred             CCCCCcCchhhHHHHHHHHhcCCCCCccccccccc------cccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHH
Q psy4039         431 FVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY------EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAAT  504 (588)
Q Consensus       431 ~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~------~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~  504 (588)
                        ++.++|||||||++|||++|+.||.........      ........+..+++.+.++|.+||+.||.+|||++++++
T Consensus       210 --~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~ll~  287 (327)
T 3lm5_A          210 --ITTATDMWNIGIIAYMLLTHTSPFVGEDNQETYLNISQVNVDYSEETFSSVSQLATDFIQSLLVKNPEKRPTAEICLS  287 (327)
T ss_dssp             --CCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             --CCchhhHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhcccccCchhhcccCHHHHHHHHHHcCCChhhCcCHHHHhC
Confidence              457899999999999999999999764322111      112223344678999999999999999999999999988


Q ss_pred             HHhhhhhcCCccccC
Q psy4039         505 VCQLYLWAPKHWLYG  519 (588)
Q Consensus       505 ~L~~~~~~~h~w~~~  519 (588)
                               |||++.
T Consensus       288 ---------h~~~~~  293 (327)
T 3lm5_A          288 ---------HSWLQQ  293 (327)
T ss_dssp             ---------CGGGCC
T ss_pred             ---------CHhhcc
Confidence                     999984

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=100.00  E-value=1.1e-42  Score=351.09  Aligned_cols=255  Identities=20%  Similarity=0.241  Sum_probs=203.2

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||.||+|.+.  ++.||||++......                ...+.+.+|+.+++.+    +|||
T Consensus         7 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~----------------~~~~~~~~e~~~l~~l----~h~~   66 (276)
T 2yex_A            7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAV----------------DCPENIKKEICINKML----NHEN   66 (276)
T ss_dssp             HHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCT----------------THHHHHHHHHHHHHTC----CCTT
T ss_pred             cceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccch----------------hhhHHHHHHHHHHHhc----CCCC
Confidence            78999999999999999999987  889999998532211                1123456788998887    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++++.+..                            ..++||||+ +++|.+++.... .+++..+..++.|++.|
T Consensus        67 i~~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~i~~~  117 (276)
T 2yex_A           67 VVKFYGHRREGN----------------------------IQYLFLEYCSGGELFDRIEPDI-GMPEPDAQRFFHQLMAG  117 (276)
T ss_dssp             BCCEEEEEEETT----------------------------EEEEEEECCTTEEGGGGSBTTT-BCCHHHHHHHHHHHHHH
T ss_pred             ceeeeeEEEcCC----------------------------EEEEEEEecCCCcHHHHHhhcc-CCCHHHHHHHHHHHHHH
Confidence            999999987632                            489999999 469999886543 79999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||++||+||||||+||+++.+     +.+||+|||++..........   ......||+.|+|||++.+...     
T Consensus       118 l~~lH~~~i~H~dl~p~Nil~~~~-----~~~kl~dfg~~~~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~-----  184 (276)
T 2yex_A          118 VVYLHGIGITHRDIKPENLLLDER-----DNLKISDFGLATVFRYNNRER---LLNKMCGTLPYVAPELLKRREF-----  184 (276)
T ss_dssp             HHHHHHTTEECSCCSGGGEEECTT-----CCEEECCCTTCEECEETTEEC---CBCCCCSCGGGCCGGGGTCSSB-----
T ss_pred             HHHHHhCCeeccCCChHHEEEccC-----CCEEEeeCCCccccCCCcchh---cccCCccccCccChHHHhcCCC-----
Confidence            999999999999999999999987     789999999998654322111   1124679999999999876531     


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcccccccc-c---c-ccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHh
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD-Y---E-VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~-~---~-~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~  507 (588)
                      .+.++|||||||++|||++|..||........ +   . .......+..+++++.++|.+||+.||.+|||++++++   
T Consensus       185 ~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~---  261 (276)
T 2yex_A          185 HAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPLALLHKILVENPSARITIPDIKK---  261 (276)
T ss_dssp             CHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSHHHHHHHTTCTTSTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT---
T ss_pred             CCCcchHHHHHHHHHHHHhCCCCCCCCchHHHHHHHhhhcccccCchhhcCHHHHHHHHHHCCCCchhCCCHHHHhc---
Confidence            23579999999999999999999976432211 0   0 01111223467899999999999999999999999998   


Q ss_pred             hhhhcCCccccCCC
Q psy4039         508 LYLWAPKHWLYGAT  521 (588)
Q Consensus       508 ~~~~~~h~w~~~~~  521 (588)
                            |||++...
T Consensus       262 ------~~~~~~~~  269 (276)
T 2yex_A          262 ------DRWYNKPL  269 (276)
T ss_dssp             ------CTTTTCCC
T ss_pred             ------CccccChh
Confidence                  99998543

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=100.00  E-value=1.3e-42  Score=357.43  Aligned_cols=268  Identities=21%  Similarity=0.243  Sum_probs=197.7

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||.||+|.+.  ++.||||++...+    . .            ..+.+.+|+.+++.+    +|||
T Consensus        11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~----~-~------------~~~~~~~e~~~l~~l----~h~~   69 (320)
T 2i6l_A           11 SRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTD----P-Q------------SVKHALREIKIIRRL----DHDN   69 (320)
T ss_dssp             TTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCS----H-H------------HHHHHHHHHHHHHTC----CCTT
T ss_pred             CceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCC----h-H------------HHHHHHHHHHHHHhc----CCCC
Confidence            78999999999999999999997  8999999985321    1 0            123456799999887    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      |+++++++........              ...+........++||||++|+|.+++...  .+++..++.++.|++.||
T Consensus        70 iv~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~lv~e~~~~~L~~~~~~~--~~~~~~~~~~~~qi~~~l  133 (320)
T 2i6l_A           70 IVKVFEILGPSGSQLT--------------DDVGSLTELNSVYIVQEYMETDLANVLEQG--PLLEEHARLFMYQLLRGL  133 (320)
T ss_dssp             BCCEEEEECTTSCBCC--------------C----CCSCSEEEEEEECCSEEHHHHHTTC--CCCHHHHHHHHHHHHHHH
T ss_pred             eeEEEEeccccccccc--------------cccccccccCceeEEeeccCCCHHHHhhcC--CccHHHHHHHHHHHHHHH
Confidence            9999999865321100              001122334569999999999999999654  799999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN  433 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~  433 (588)
                      .|||++||+||||||+|||++.+.    +.+||+|||+++........  ........||+.|+|||++.+...     +
T Consensus       134 ~~lH~~~i~H~dlkp~Nil~~~~~----~~~kl~Dfg~~~~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~-----~  202 (320)
T 2i6l_A          134 KYIHSANVLHRDLKPANLFINTED----LVLKIGDFGLARIMDPHYSH--KGHLSEGLVTKWYRSPRLLLSPNN-----Y  202 (320)
T ss_dssp             HHHHHTTCBCCCCSGGGEEEETTT----TEEEECCCTTCBCC----------CCCGGGSCCTTCCHHHHHCTTC-----C
T ss_pred             HHHHhCCEecCCCCHHHEEEcCCC----CeEEEccCccccccCCCccc--ccccccccccccccCcHHhcCccc-----C
Confidence            999999999999999999997442    68999999999876432111  111124568999999999865321     4


Q ss_pred             CCcCchhhHHHHHHHHhcCCCCCccccccccccc--------------------------------cccCCCCCCccHHH
Q psy4039         434 YSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV--------------------------------NALPQLNTNVPEVM  481 (588)
Q Consensus       434 ~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~l  481 (588)
                      +.++|||||||++|||++|+.||.+.........                                .........+++++
T Consensus       203 ~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (320)
T 2i6l_A          203 TKAIDMWAAGCIFAEMLTGKTLFAGAHELEQMQLILESIPVVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREA  282 (320)
T ss_dssp             CHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHSCCCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHH
T ss_pred             CchhhhHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCchhhhhhhhhcCcccccccccCCCCChhHhcchhhHHH
Confidence            5679999999999999999999976421110000                                00011234689999


Q ss_pred             HHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccCC
Q psy4039         482 RRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGA  520 (588)
Q Consensus       482 ~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~  520 (588)
                      +++|.+||+.||++|||++++++         |||++..
T Consensus       283 ~~li~~~L~~dP~~Rpt~~ell~---------hp~~~~~  312 (320)
T 2i6l_A          283 VDFLEQILTFSPMDRLTAEEALS---------HPYMSIY  312 (320)
T ss_dssp             HHHHHTTSCSSGGGSCCHHHHHT---------SHHHHTT
T ss_pred             HHHHHHHcCCCccccCCHHHHhC---------Ccccccc
Confidence            99999999999999999999999         9999843

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=100.00  E-value=2.1e-42  Score=357.42  Aligned_cols=261  Identities=21%  Similarity=0.257  Sum_probs=208.9

Q ss_pred             CCccccccCCeEEeeeecccCceeEEEEEEC-------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHH
Q psy4039         188 PDVDDVKVDDIQIGKFIAKGTNAVVYEATFR-------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDM  260 (588)
Q Consensus       188 ~~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~  260 (588)
                      ...+++..++|++.+.||+|+||.||+|.+.       +..||||++.....   .             .....+.+|+.
T Consensus        17 ~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~---~-------------~~~~~~~~E~~   80 (322)
T 1p4o_A           17 PDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAAS---M-------------RERIEFLNEAS   80 (322)
T ss_dssp             CCTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSC---H-------------HHHHHHHHHHH
T ss_pred             hhhhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccC---H-------------HHHHHHHHHHH
Confidence            5667788899999999999999999999875       57899999853211   0             01234567999


Q ss_pred             HHhhhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc-----
Q psy4039         261 LMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC-----  334 (588)
Q Consensus       261 il~~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~-----  334 (588)
                      +++.+    +||||+++++++.+..                            ..++||||+ +|+|.+++....     
T Consensus        81 ~l~~l----~h~~i~~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~~~~~~  128 (322)
T 1p4o_A           81 VMKEF----NCHHVVRLLGVVSQGQ----------------------------PTLVIMELMTRGDLKSYLRSLRPAMAN  128 (322)
T ss_dssp             HGGGC----CCTTBCCEEEEECSSS----------------------------SCEEEEECCTTCBHHHHHHHHHHHHHH
T ss_pred             HHHhc----CCCCEeeeEEEEccCC----------------------------ccEEEEEeCCCCcHHHHHHHhchhhcc
Confidence            99887    8999999999987632                            389999999 579999998632     


Q ss_pred             ----CCCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccc
Q psy4039         335 ----AQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIEL  410 (588)
Q Consensus       335 ----~~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~  410 (588)
                          ..+++..++.++.||+.||.|||++||+||||||+|||++.+     +.+||+|||+++........   ......
T Consensus       129 ~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~NIli~~~-----~~~kl~Dfg~~~~~~~~~~~---~~~~~~  200 (322)
T 1p4o_A          129 NPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAED-----FTVKIGDFGMTRDIYETDYY---RKGGKG  200 (322)
T ss_dssp             CTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCSGGGEEECTT-----CCEEECCTTCCCGGGGGGCE---EGGGSS
T ss_pred             CCCCCCcCHHHHHHHHHHHHHHHHHHHHCCCccCCCccceEEEcCC-----CeEEECcCcccccccccccc---ccccCC
Confidence                357999999999999999999999999999999999999987     89999999999765432111   111234


Q ss_pred             cCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHHH
Q psy4039         411 GGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVA  486 (588)
Q Consensus       411 ~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~  486 (588)
                      .||+.|+|||++.+..      ++.++|||||||++|||++ |..||.+......   ......+..+..+|+++.+++.
T Consensus       201 ~~~~~y~aPE~~~~~~------~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  274 (322)
T 1p4o_A          201 LLPVRWMSPESLKDGV------FTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMR  274 (322)
T ss_dssp             EECGGGCCHHHHHHCC------CCHHHHHHHHHHHHHHHHHTSCCTTTTSCHHHHHHHHHTTCCCCCCTTCCHHHHHHHH
T ss_pred             CCCCCccChhhhccCC------CCchhhHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHH
Confidence            5789999999998765      4568999999999999999 8999976422211   1122334556789999999999


Q ss_pred             HhhhhCCCCCCCHHHHHHHHhhhh
Q psy4039         487 KLLENDPSDRPSAELAATVCQLYL  510 (588)
Q Consensus       487 ~~L~~dP~~Rps~~e~l~~L~~~~  510 (588)
                      +||+.||.+|||++++++.|+..+
T Consensus       275 ~~l~~dp~~Rps~~e~l~~L~~~~  298 (322)
T 1p4o_A          275 MCWQYNPKMRPSFLEIISSIKEEM  298 (322)
T ss_dssp             HHTCSSGGGSCCHHHHHHHHGGGS
T ss_pred             HHcCCCcccCcCHHHHHHHHHHhh
Confidence            999999999999999999887654

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=100.00  E-value=1e-42  Score=353.97  Aligned_cols=256  Identities=18%  Similarity=0.205  Sum_probs=200.6

Q ss_pred             ccccCCeEEeeeecccCceeEEEEEEC--C-------eeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHH
Q psy4039         192 DVKVDDIQIGKFIAKGTNAVVYEATFR--G-------VEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLM  262 (588)
Q Consensus       192 ~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g-------~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il  262 (588)
                      ++..++|++.+.||+|+||+||+|.+.  +       ..||+|++....                 ....+.+.+|+.++
T Consensus         4 ~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~-----------------~~~~~~~~~E~~~l   66 (289)
T 4fvq_A            4 KIRNEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAH-----------------RNYSESFFEAASMM   66 (289)
T ss_dssp             BCCGGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGG-----------------GGGHHHHHHHHHHH
T ss_pred             EechhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhccccc-----------------HHHHHHHHHHHHHH
Confidence            455689999999999999999999887  2       579999984311                 11234567799999


Q ss_pred             hhhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHH
Q psy4039         263 NSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHE  341 (588)
Q Consensus       263 ~~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~  341 (588)
                      +.+    +||||+++++++.+..                            ..++||||+ +|+|.+++......+++..
T Consensus        67 ~~l----~h~~iv~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~~~~~~~~  114 (289)
T 4fvq_A           67 SKL----SHKHLVLNYGVCVCGD----------------------------ENILVQEFVKFGSLDTYLKKNKNCINILW  114 (289)
T ss_dssp             HTS----CCTTBCCEEEEECCTT----------------------------CCEEEEECCTTCBHHHHHHHTGGGCCHHH
T ss_pred             HhC----CCCCEeEEEEEEEeCC----------------------------CCEEEEECCCCCCHHHHHHhCCCCCCHHH
Confidence            987    8999999999987632                            378999999 5899999988765699999


Q ss_pred             HHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCC---CCCceeeeccccccccCCCCccccccccccccCCccccc
Q psy4039         342 RVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDN---TCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMA  418 (588)
Q Consensus       342 ~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~---~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~A  418 (588)
                      ++.++.||+.||.|||++||+||||||+|||++.+...   ..+.+||+|||++......         ....||+.|+|
T Consensus       115 ~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~kl~Dfg~~~~~~~~---------~~~~~~~~y~a  185 (289)
T 4fvq_A          115 KLEVAKQLAAAMHFLEENTLIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGISITVLPK---------DILQERIPWVP  185 (289)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEEECCBGGGTBCCEEEECCCCSCTTTSCH---------HHHHHTTTTSC
T ss_pred             HHHHHHHHHHHHHHHhhCCeECCCcCcceEEEecCCcccccccceeeeccCcccccccCc---------cccCCcCcccC
Confidence            99999999999999999999999999999999887310   0112999999998654321         13458999999


Q ss_pred             hhHHhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccc--ccccccCCCCCCccHHHHHHHHHhhhhCCCCC
Q psy4039         419 PEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD--YEVNALPQLNTNVPEVMRRLVAKLLENDPSDR  496 (588)
Q Consensus       419 PE~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~--~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~R  496 (588)
                      ||++.+...     ++.++|||||||++|||++|..|+........  .........+..+++++.+++.+||+.||.+|
T Consensus       186 PE~~~~~~~-----~~~~~DiwslG~il~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~R  260 (289)
T 4fvq_A          186 PECIENPKN-----LNLATDKWSFGTTLWEICSGGDKPLSALDSQRKLQFYEDRHQLPAPKAAELANLINNCMDYEPDHR  260 (289)
T ss_dssp             HHHHHCGGG-----CCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCCCCCSSCTTHHHHHHHSCSSGGGS
T ss_pred             HHHhCCCCC-----CCchhHHHHHHHHHHHHHcCCCCCccccchHHHHHHhhccCCCCCCCCHHHHHHHHHHcCCChhHC
Confidence            999975221     45689999999999999996555443221111  11123344566778899999999999999999


Q ss_pred             CCHHHHHHHHhhhh
Q psy4039         497 PSAELAATVCQLYL  510 (588)
Q Consensus       497 ps~~e~l~~L~~~~  510 (588)
                      ||++++++.|+..+
T Consensus       261 ps~~~ll~~l~~l~  274 (289)
T 4fvq_A          261 PSFRAIIRDLNSLF  274 (289)
T ss_dssp             CCHHHHHHHHHTCC
T ss_pred             cCHHHHHHHHHHhc
Confidence            99999999888554

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=100.00  E-value=2.9e-42  Score=357.88  Aligned_cols=266  Identities=19%  Similarity=0.204  Sum_probs=209.2

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEE------CCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhh
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATF------RGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNS  264 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~------~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~  264 (588)
                      .-+..++|++.+.||+|+||.||+|.+      .+..||||++....    . .            ..+.+.+|+.+++.
T Consensus        18 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~----~-~------------~~~~~~~E~~~l~~   80 (327)
T 3lxl_A           18 TIFEERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSG----P-D------------QQRDFQREIQILKA   80 (327)
T ss_dssp             CBCCGGGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCC----H-H------------HHHHHHHHHHHHHT
T ss_pred             hhhchhhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCC----H-H------------HHHHHHHHHHHHHh
Confidence            345668999999999999999999995      27899999985321    0 0            12346679999998


Q ss_pred             hcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHH
Q psy4039         265 VENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERV  343 (588)
Q Consensus       265 l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~  343 (588)
                      +    +||||+++++++....                          ...+++||||+ +++|.+++......+++..++
T Consensus        81 l----~h~~i~~~~~~~~~~~--------------------------~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~  130 (327)
T 3lxl_A           81 L----HSDFIVKYRGVSYGPG--------------------------RQSLRLVMEYLPSGCLRDFLQRHRARLDASRLL  130 (327)
T ss_dssp             C----CCTTBCCEEEEEECSS--------------------------SCEEEEEEECCTTCBHHHHHHHHGGGCCHHHHH
T ss_pred             c----CCCceeEEEEEEecCC--------------------------CceEEEEEeecCCCCHHHHHHhcccCCCHHHHH
Confidence            7    9999999999886421                          22589999999 689999998865579999999


Q ss_pred             HHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHh
Q psy4039         344 LLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVAL  423 (588)
Q Consensus       344 ~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~  423 (588)
                      .++.|++.||.|||++||+||||||+|||++.+     +.+||+|||+++.........  .......||+.|+|||++.
T Consensus       131 ~i~~qi~~al~~lH~~~ivH~Dikp~NIl~~~~-----~~~kl~Dfg~~~~~~~~~~~~--~~~~~~~~~~~y~aPE~~~  203 (327)
T 3lxl_A          131 LYSSQICKGMEYLGSRRCVHRDLAARNILVESE-----AHVKIADFGLAKLLPLDKDYY--VVREPGQSPIFWYAPESLS  203 (327)
T ss_dssp             HHHHHHHHHHHHHHHTTEECSCCSGGGEEEEET-----TEEEECCGGGCEECCTTCSEE--ECSSCCCSCGGGSCHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCccCCCCChhhEEECCC-----CCEEEcccccceecccCCccc--eeeccCCccccccCHHHhc
Confidence            999999999999999999999999999999988     899999999998765432211  1112456899999999998


Q ss_pred             cCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccc------------------ccccccccCCCCCCccHHHHHHH
Q psy4039         424 ATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARN------------------TDYEVNALPQLNTNVPEVMRRLV  485 (588)
Q Consensus       424 ~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~------------------~~~~~~~~~~~~~~~~~~l~~Li  485 (588)
                      +..      ++.++|||||||++|||++|..||......                  ...........+..+++++.+++
T Consensus       204 ~~~------~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  277 (327)
T 3lxl_A          204 DNI------FSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGCERDVPALSRLLELLEEGQRLPAPPACPAEVHELM  277 (327)
T ss_dssp             HCE------EEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHCC----CCHHHHHHHHHHTTCCCCCCTTCCHHHHHHH
T ss_pred             cCC------CChHHhHHHHHHHHHHHHhCCCCCccccchhhhhcccccccccHHHHHHHhhcccCCCCCCcccHHHHHHH
Confidence            764      346899999999999999999998663211                  00111233455678999999999


Q ss_pred             HHhhhhCCCCCCCHHHHHHHHhhhhhcCCcc
Q psy4039         486 AKLLENDPSDRPSAELAATVCQLYLWAPKHW  516 (588)
Q Consensus       486 ~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w  516 (588)
                      .+||+.||.+|||++++++.|+..+.....|
T Consensus       278 ~~~l~~dP~~Rps~~ell~~L~~~~~~~~~~  308 (327)
T 3lxl_A          278 KLCWAPSPQDRPSFSALGPQLDMLWSGSRGC  308 (327)
T ss_dssp             HHHTCSSGGGSCCHHHHHHHHHHC-------
T ss_pred             HHHcCCChhhCcCHHHHHHHHHHHHhhhcCc
Confidence            9999999999999999999998665443333

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=100.00  E-value=1.2e-41  Score=346.66  Aligned_cols=255  Identities=16%  Similarity=0.162  Sum_probs=199.5

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||.||+|.+.  ++.||||++....                   ....+.+|+.+++.+    +|+|
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-------------------~~~~~~~e~~~l~~l----~~~~   65 (296)
T 4hgt_A            9 NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT-------------------KHPQLHIESKIYKMM----QGGV   65 (296)
T ss_dssp             --CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC----------------------CCCHHHHHHHHHHH----TTST
T ss_pred             CceEEeeeecCCCCeEEEEEEEcCCCceEEEEeecccc-------------------cchHHHHHHHHHHHh----cCCC
Confidence            78999999999999999999975  8899999874321                   223467799999988    7777


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      ++..+..+...                           ....++||||++++|.+++......+++.++..++.||+.||
T Consensus        66 ~i~~~~~~~~~---------------------------~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l  118 (296)
T 4hgt_A           66 GIPTIRWCGAE---------------------------GDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRI  118 (296)
T ss_dssp             TCCCEEEEEEE---------------------------TTEEEEEEECCCCBHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred             CCCeeeeecCC---------------------------CCceEEEEEccCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            77666655432                           124899999999999999987656899999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEE---cCCCCCCCCceeeeccccccccCCCCcccc--ccccccccCCccccchhHHhcCCCC
Q psy4039         354 THLNMHRTAHRDLKSDNILL---DCSEDNTCPQLVITDFGSSYTNKSGLSMQY--SSADIELGGNVALMAPEVALATPGL  428 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILl---d~~~~~~~~~vkL~DFGla~~~~~~~~~~~--~~~~~~~~GT~~Y~APE~l~~~~~~  428 (588)
                      .|||++||+||||||+|||+   +.+     +.+||+|||+++..........  ........||+.|+|||++.+..  
T Consensus       119 ~~LH~~~ivH~Dlkp~NIl~~~~~~~-----~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~--  191 (296)
T 4hgt_A          119 EYIHSKNFIHRDVKPDNFLMGLGKKG-----NLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIE--  191 (296)
T ss_dssp             HHHHHTTEECSCCSGGGEEECCGGGT-----TCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCC--
T ss_pred             HHHHHCCeecCCCCHHHeeeeccCCC-----CeEEEecCccceeccCcccCccCCCCcccccCCCccccchHHhcCCC--
Confidence            99999999999999999999   555     7899999999987655322110  01123567999999999998765  


Q ss_pred             ccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccccc----------cccCCCCCCccHHHHHHHHHhhhhCCCCCCC
Q psy4039         429 FSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV----------NALPQLNTNVPEVMRRLVAKLLENDPSDRPS  498 (588)
Q Consensus       429 ~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~----------~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps  498 (588)
                          ++.++|||||||++|||++|+.||.+.........          ...+.....+|+++.+++.+||+.||++|||
T Consensus       192 ----~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt  267 (296)
T 4hgt_A          192 ----QSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPD  267 (296)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHTSCTTCCCC
T ss_pred             ----CCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhhhcccccchhhhhhccCCHHHHHHHHHHHhcCCCCCCC
Confidence                45689999999999999999999976322111100          0111123568999999999999999999999


Q ss_pred             HHHHHHHHhhhhh
Q psy4039         499 AELAATVCQLYLW  511 (588)
Q Consensus       499 ~~e~l~~L~~~~~  511 (588)
                      ++++++.|+..+.
T Consensus       268 ~~~l~~~l~~~~~  280 (296)
T 4hgt_A          268 YSYLRQLFRNLFH  280 (296)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998886653

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=100.00  E-value=2.8e-42  Score=352.92  Aligned_cols=258  Identities=22%  Similarity=0.242  Sum_probs=200.5

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      +.|++.+.||+|+||.||+|.+.  +..||+|++.....                 ...+.+.+|+.+++.+    +|||
T Consensus        19 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~-----------------~~~~~~~~e~~~l~~l----~h~~   77 (302)
T 2j7t_A           19 EVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSE-----------------EELEDYIVEIEILATC----DHPY   77 (302)
T ss_dssp             GTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC---------------------CCHHHHHHHHHHHHHC----CCTT
T ss_pred             cceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCH-----------------HHHHHHHHHHHHHhcC----CCCC
Confidence            78999999999999999999997  78999999843211                 1234566799999887    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++++.+..                            ..++||||+ +++|.+++......+++..+..++.|++.|
T Consensus        78 i~~~~~~~~~~~----------------------------~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~  129 (302)
T 2j7t_A           78 IVKLLGAYYHDG----------------------------KLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEA  129 (302)
T ss_dssp             BCCEEEEEECC-----------------------------CEEEEEECCTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred             EeeeeeeeeeCC----------------------------eEEEEEEeCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHH
Confidence            999999987632                            389999999 579999998766689999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||++||+||||||+|||++.+     +.+||+|||++.......     .......||+.|+|||++...... ...
T Consensus       130 l~~lH~~~i~H~dlkp~Nil~~~~-----~~~kl~Dfg~~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~-~~~  198 (302)
T 2j7t_A          130 LNFLHSKRIIHRDLKAGNVLMTLE-----GDIRLADFGVSAKNLKTL-----QKRDSFIGTPYWMAPEVVMCETMK-DTP  198 (302)
T ss_dssp             HHHHHHTTCCCCCCSGGGEEECTT-----SCEEECCCHHHHHHHHHH-----HC-----CCGGGCCHHHHHHHHTT-STT
T ss_pred             HHHHhcCCcccCCCCHHHEEECCC-----CCEEEEECCCCccccccc-----cccccccCChhhcCCeeeccccCC-CCC
Confidence            999999999999999999999987     789999999976432110     011135699999999998521100 001


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcccccccccc---cccc--CCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHh
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE---VNAL--PQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~---~~~~--~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~  507 (588)
                      ++.++|||||||++|||++|..||..........   ....  ...+..++.++.++|.+||+.||.+|||++++++   
T Consensus       199 ~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~---  275 (302)
T 2j7t_A          199 YDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSDPPTLLTPSKWSVEFRDFLKIALDKNPETRPSAAQLLE---  275 (302)
T ss_dssp             TTTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSSGGGSCHHHHHHHHHHSCSCTTTSCCHHHHTT---
T ss_pred             CchhhhHHHHHHHHHHHhcCCCCCccCCHHHHHHHHhccCCcccCCccccCHHHHHHHHHHcccChhhCCCHHHHhc---
Confidence            4578999999999999999999997642211110   1111  1224567899999999999999999999999988   


Q ss_pred             hhhhcCCccccCCCC
Q psy4039         508 LYLWAPKHWLYGATP  522 (588)
Q Consensus       508 ~~~~~~h~w~~~~~~  522 (588)
                            |||++....
T Consensus       276 ------h~~~~~~~~  284 (302)
T 2j7t_A          276 ------HPFVSSITS  284 (302)
T ss_dssp             ------STTTTTCCC
T ss_pred             ------ChHHhhhcc
Confidence                  999985543

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=100.00  E-value=4.2e-42  Score=357.11  Aligned_cols=261  Identities=22%  Similarity=0.271  Sum_probs=208.0

Q ss_pred             CccccccCCeEEeeeecccCceeEEEEEEC-------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHH
Q psy4039         189 DVDDVKVDDIQIGKFIAKGTNAVVYEATFR-------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDML  261 (588)
Q Consensus       189 ~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~i  261 (588)
                      ..+++..++|++.+.||+|+||.||+|.+.       ...||||++.....   .             ...+.+.+|+.+
T Consensus        39 ~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~---~-------------~~~~~~~~E~~~  102 (333)
T 2i1m_A           39 EKWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAH---A-------------DEKEALMSELKI  102 (333)
T ss_dssp             GGGBCCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCC---H-------------HHHHHHHHHHHH
T ss_pred             ccccCCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccC---h-------------HHHHHHHHHHHH
Confidence            456778899999999999999999999986       24799999853211   0             022346679999


Q ss_pred             HhhhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh-------
Q psy4039         262 MNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER-------  333 (588)
Q Consensus       262 l~~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~-------  333 (588)
                      ++.+   .+||||+++++++.+..                            ..++||||+ +|+|.+++...       
T Consensus       103 l~~l---~~h~~iv~~~~~~~~~~----------------------------~~~lv~e~~~~g~L~~~l~~~~~~~~~~  151 (333)
T 2i1m_A          103 MSHL---GQHENIVNLLGACTHGG----------------------------PVLVITEYCCYGDLLNFLRRKSRVLETD  151 (333)
T ss_dssp             HHHH---CCCTTBCCEEEEECSSS----------------------------SCEEEEECCTTEEHHHHHHHHHHHHSCC
T ss_pred             HHhh---cCCCCeeeEEEEEecCC----------------------------ceEEEEecCCCCcHHHHHHHhccccccc
Confidence            9887   47999999999987632                            389999999 57999999864       


Q ss_pred             ------cCCCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCcccccccc
Q psy4039         334 ------CAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSAD  407 (588)
Q Consensus       334 ------~~~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~  407 (588)
                            ...+++..++.++.|++.||.|||++||+||||||+|||++.+     +.+||+|||+++.........   ..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~-----~~~kl~Dfg~~~~~~~~~~~~---~~  223 (333)
T 2i1m_A          152 PAFAIANSTASTRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNG-----HVAKIGDFGLARDIMNDSNYI---VK  223 (333)
T ss_dssp             -------CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGCEEEGG-----GEEEBCCCGGGCCGGGCTTSE---EC
T ss_pred             ccccccccccCHHHHHHHHHHHHHHHHHHhcCCcccCCcccceEEECCC-----CeEEECcccccccccccccee---ec
Confidence                  2358999999999999999999999999999999999999987     799999999998654322111   11


Q ss_pred             ccccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCccccccccc----cccccCCCCCCccHHHH
Q psy4039         408 IELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTDY----EVNALPQLNTNVPEVMR  482 (588)
Q Consensus       408 ~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~~----~~~~~~~~~~~~~~~l~  482 (588)
                      ....||+.|+|||++.+..      ++.++|||||||++|||++ |..||.+.......    .....+..+..+|+++.
T Consensus       224 ~~~~~~~~y~aPE~~~~~~------~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  297 (333)
T 2i1m_A          224 GNARLPVKWMAPESIFDCV------YTVQSDVWSYGILLWEIFSLGLNPYPGILVNSKFYKLVKDGYQMAQPAFAPKNIY  297 (333)
T ss_dssp             SSCEECGGGSCHHHHHHCC------CCHHHHHHHHHHHHHHHTTTSCCSSTTCCSSHHHHHHHHHTCCCCCCTTCCHHHH
T ss_pred             CCCCCCccccCHHHhccCC------CChHHHHHHHHHHHHHHHcCCCCCCcccchhHHHHHHHhcCCCCCCCCCCCHHHH
Confidence            2355788999999998765      4578999999999999998 99999764322211    11223345667899999


Q ss_pred             HHHHHhhhhCCCCCCCHHHHHHHHhhhh
Q psy4039         483 RLVAKLLENDPSDRPSAELAATVCQLYL  510 (588)
Q Consensus       483 ~Li~~~L~~dP~~Rps~~e~l~~L~~~~  510 (588)
                      +++.+||+.||.+|||++++++.|+...
T Consensus       298 ~li~~~l~~~p~~Rps~~~l~~~L~~~~  325 (333)
T 2i1m_A          298 SIMQACWALEPTHRPTFQQICSFLQEQA  325 (333)
T ss_dssp             HHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             HHHHHHhccChhhCcCHHHHHHHHHHHH
Confidence            9999999999999999999999887543

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=100.00  E-value=1.8e-42  Score=358.77  Aligned_cols=254  Identities=19%  Similarity=0.231  Sum_probs=200.0

Q ss_pred             ccccCCeEEeeeecccCceeEEEEEEC-CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCC
Q psy4039         192 DVKVDDIQIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPP  270 (588)
Q Consensus       192 ~i~~~~~~~~~~IG~G~fG~Vy~a~~~-g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~  270 (588)
                      .+..++|++.+.||+|+||.||+|.+. ++.||||++......                .....+.+|+.+++.+    +
T Consensus        26 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~----------------~~~~~~~~e~~~l~~l----~   85 (326)
T 3uim_A           26 QVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQ----------------GGELQFQTEVEMISMA----V   85 (326)
T ss_dssp             HTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC---------------------CCCHHHHHHHGGGTC----C
T ss_pred             HHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCc----------------hHHHHHHHHHHHHHhc----c
Confidence            344488999999999999999999876 789999998532111                1233567899999887    8


Q ss_pred             CCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc---CCCCHHHHHHHH
Q psy4039         271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC---AQLSMHERVLLF  346 (588)
Q Consensus       271 HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~---~~l~~~~~~~i~  346 (588)
                      ||||+++++++.+..                            ..++||||+ +|+|.+++....   ..+++..+..++
T Consensus        86 h~~iv~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~  137 (326)
T 3uim_A           86 HRNLLRLRGFCMTPT----------------------------ERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIA  137 (326)
T ss_dssp             CTTBCCCCEEECCSS----------------------------CCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHH
T ss_pred             CCCccceEEEEecCC----------------------------ceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHH
Confidence            999999999987632                            378999999 579999998642   349999999999


Q ss_pred             HHHHHHHHHHHhC---CceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHh
Q psy4039         347 TQLLEGVTHLNMH---RTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVAL  423 (588)
Q Consensus       347 ~ql~~gL~yLH~~---~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~  423 (588)
                      .|++.||.|||++   ||+||||||+|||++.+     +.+||+|||+++.........    .....||+.|+|||++.
T Consensus       138 ~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~-----~~~kl~Dfg~~~~~~~~~~~~----~~~~~gt~~y~aPE~~~  208 (326)
T 3uim_A          138 LGSARGLAYLHDHCDPKIIHRDVKAANILLDEE-----FEAVVGDFGLAKLMDYKDTHV----TTAVRGTIGHIAPEYLS  208 (326)
T ss_dssp             HHHHHHHHHHHHSSSSCEECCCCSGGGEEECTT-----CCEEECCCSSCEECCSSSSCE----ECCCCSCGGGCCHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCeEeCCCchhhEEECCC-----CCEEeccCccccccCcccccc----cccccCCcCccCHHHhc
Confidence            9999999999999   99999999999999987     899999999998765422211    12456999999999997


Q ss_pred             cCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccc-----------------ccccc----ccccCCCCCCccHHHH
Q psy4039         424 ATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSAR-----------------NTDYE----VNALPQLNTNVPEVMR  482 (588)
Q Consensus       424 ~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~-----------------~~~~~----~~~~~~~~~~~~~~l~  482 (588)
                      +..      ++.++|||||||++|||++|+.||.....                 .....    .......+...++.+.
T Consensus       209 ~~~------~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  282 (326)
T 3uim_A          209 TGK------SSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLI  282 (326)
T ss_dssp             HSE------ECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHHTTTTSSCCSTTSSCTTCTTSCCHHHHHHHH
T ss_pred             cCC------CCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHHHHHhhchhhhhhcChhhccccCHHHHHHHH
Confidence            765      45689999999999999999999963110                 00000    0111122334457899


Q ss_pred             HHHHHhhhhCCCCCCCHHHHHHHHhh
Q psy4039         483 RLVAKLLENDPSDRPSAELAATVCQL  508 (588)
Q Consensus       483 ~Li~~~L~~dP~~Rps~~e~l~~L~~  508 (588)
                      +++.+||+.||.+|||++++++.|+.
T Consensus       283 ~li~~cl~~dP~~Rps~~ell~~L~~  308 (326)
T 3uim_A          283 QVALLCTQSSPMERPKMSEVVRMLEG  308 (326)
T ss_dssp             HHHHHHTCSCGGGSCCHHHHHHHHHT
T ss_pred             HHHHHHhCcCCccCCCHHHHHHHhcC
Confidence            99999999999999999999998874

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=100.00  E-value=1.9e-41  Score=345.44  Aligned_cols=254  Identities=17%  Similarity=0.178  Sum_probs=201.3

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||.||+|++.  ++.||||++....                   ....+.+|+.+++.+    +|+|
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-------------------~~~~~~~e~~~l~~l----~~~~   65 (296)
T 3uzp_A            9 NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT-------------------KHPQLHIESKIYKMM----QGGV   65 (296)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCS-------------------SCCHHHHHHHHHHHH----TTST
T ss_pred             cEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCc-------------------chhHHHHHHHHHHHh----hcCC
Confidence            78999999999999999999975  8999999985321                   223467799999998    7777


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      ++..+..+...                           ....++||||++++|.+++......+++.+++.++.|++.||
T Consensus        66 ~i~~~~~~~~~---------------------------~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l  118 (296)
T 3uzp_A           66 GIPTIRWCGAE---------------------------GDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRI  118 (296)
T ss_dssp             TCCCEEEEEEE---------------------------TTEEEEEEECCCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHH
T ss_pred             CCCccccccCC---------------------------CCceEEEEEecCCCHHHHHHhhccCCCHHHHHHHHHHHHHHH
Confidence            66666555432                           124899999999999999986656899999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEc---CCCCCCCCceeeeccccccccCCCCcccc--ccccccccCCccccchhHHhcCCCC
Q psy4039         354 THLNMHRTAHRDLKSDNILLD---CSEDNTCPQLVITDFGSSYTNKSGLSMQY--SSADIELGGNVALMAPEVALATPGL  428 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld---~~~~~~~~~vkL~DFGla~~~~~~~~~~~--~~~~~~~~GT~~Y~APE~l~~~~~~  428 (588)
                      .|||++||+||||||+|||++   .+     +.+||+|||+++..........  ........||+.|+|||++.+..  
T Consensus       119 ~~lH~~~ivH~dlkp~NIl~~~~~~~-----~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~--  191 (296)
T 3uzp_A          119 EYIHSKNFIHRDVKPDNFLMGLGKKG-----NLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIE--  191 (296)
T ss_dssp             HHHHHTTEECSCCCGGGEEECCGGGT-----TCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCTTTCCHHHHTTCC--
T ss_pred             HHHHhCCeeeCCCCHHHeEEecCCCC-----CeEEEeeCCCcccccccccccccccccccccccccccCChhhhcCCC--
Confidence            999999999999999999995   44     7899999999987655322110  01123567999999999998765  


Q ss_pred             ccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccc---cc---c----cccCCCCCCccHHHHHHHHHhhhhCCCCCCC
Q psy4039         429 FSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD---YE---V----NALPQLNTNVPEVMRRLVAKLLENDPSDRPS  498 (588)
Q Consensus       429 ~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~---~~---~----~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps  498 (588)
                          ++.++|||||||++|||++|+.||.+......   +.   .    ...+.++..+|+++.+++.+||+.||++|||
T Consensus       192 ----~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps  267 (296)
T 3uzp_A          192 ----QSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPD  267 (296)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHTSCTTCCCC
T ss_pred             ----CCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhcccccCCchHHHHhhCCHHHHHHHHHHHhcCcCcCCC
Confidence                45689999999999999999999976321110   00   0    0111233678999999999999999999999


Q ss_pred             HHHHHHHHhhhh
Q psy4039         499 AELAATVCQLYL  510 (588)
Q Consensus       499 ~~e~l~~L~~~~  510 (588)
                      ++++++.|+..+
T Consensus       268 ~~~l~~~l~~~~  279 (296)
T 3uzp_A          268 YSYLRQLFRNLF  279 (296)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999888654

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=100.00  E-value=3.3e-42  Score=355.11  Aligned_cols=273  Identities=21%  Similarity=0.215  Sum_probs=202.6

Q ss_pred             CccccccCCeEEeeeecccCceeEEEEEEC-CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcC
Q psy4039         189 DVDDVKVDDIQIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVEN  267 (588)
Q Consensus       189 ~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~  267 (588)
                      ....+.-++|++.+.||+|+||.||+|.+. ++.||||++.......   .            ....+.+|+.+++.+..
T Consensus        21 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~---~------------~~~~~~~E~~~l~~l~~   85 (313)
T 3cek_A           21 QSMSVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADN---Q------------TLDSYRNEIAYLNKLQQ   85 (313)
T ss_dssp             CEEEETTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCH---H------------HHHHHHHHHHHHHHHGG
T ss_pred             eeeeeccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccc---c------------chHHHHHHHHHHHhccc
Confidence            344555578999999999999999999887 7889999996432111   0            12345678999988820


Q ss_pred             CCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHH
Q psy4039         268 LPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFT  347 (588)
Q Consensus       268 l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~  347 (588)
                        .||||+++++++.+..                            .+++|||+.+++|.+++.... .+++.++..++.
T Consensus        86 --~~~~iv~~~~~~~~~~----------------------------~~~lv~e~~~~~L~~~l~~~~-~~~~~~~~~i~~  134 (313)
T 3cek_A           86 --HSDKIIRLYDYEITDQ----------------------------YIYMVMECGNIDLNSWLKKKK-SIDPWERKSYWK  134 (313)
T ss_dssp             --GCTTBCCEEEEEECSS----------------------------EEEEEECCCSEEHHHHHHHCS-SCCHHHHHHHHH
T ss_pred             --cCCceEEEEEEeecCC----------------------------EEEEEEecCCCcHHHHHHhcC-CCCHHHHHHHHH
Confidence              2699999999987632                            489999977899999998764 899999999999


Q ss_pred             HHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCC
Q psy4039         348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG  427 (588)
Q Consensus       348 ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~  427 (588)
                      |+++||.|||++||+||||||+|||+++      +.+||+|||+++.........   ......||+.|+|||++.+...
T Consensus       135 qi~~aL~~LH~~~ivH~dlkp~NIl~~~------~~~kL~Dfg~~~~~~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~  205 (313)
T 3cek_A          135 NMLEAVHTIHQHGIVHSDLKPANFLIVD------GMLKLIDFGIANQMQPDTTSV---VKDSQVGTVNYMPPEAIKDMSS  205 (313)
T ss_dssp             HHHHHHHHHHHTTCCCCCCCGGGEEEET------TEEEECCCSSSCC-----------------CCGGGCCHHHHTTCC-
T ss_pred             HHHHHHHHHHHCCceecCCCcccEEEEC------CeEEEeeccccccccCccccc---cccCCCCCCCcCCHHHHhhccc
Confidence            9999999999999999999999999963      589999999998764422111   1124569999999999975211


Q ss_pred             C-----ccCCCCCcCchhhHHHHHHHHhcCCCCCccccccc-----cccccccCCCCCCccHHHHHHHHHhhhhCCCCCC
Q psy4039         428 L-----FSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNT-----DYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRP  497 (588)
Q Consensus       428 ~-----~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~-----~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rp  497 (588)
                      .     ....++.++|||||||++|||++|..||.......     .........++..+++++.+++.+||+.||.+||
T Consensus       206 ~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rp  285 (313)
T 3cek_A          206 SRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRI  285 (313)
T ss_dssp             ---------CCCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHCTTSCCCCCCCSCHHHHHHHHHHTCSSTTTSC
T ss_pred             ccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHhcccccCCcccchHHHHHHHHHHccCCcccCc
Confidence            0     00124568999999999999999999997632211     1111222345567789999999999999999999


Q ss_pred             CHHHHHHHHhhhhhcCCccccCCCCChh
Q psy4039         498 SAELAATVCQLYLWAPKHWLYGATPSHN  525 (588)
Q Consensus       498 s~~e~l~~L~~~~~~~h~w~~~~~~~~~  525 (588)
                      |++++++         |||++.......
T Consensus       286 s~~ell~---------h~~~~~~~~~~~  304 (313)
T 3cek_A          286 SIPELLA---------HPYVQIQTHPVN  304 (313)
T ss_dssp             CHHHHHT---------SHHHHCC-----
T ss_pred             CHHHHhc---------CccccCCCCchh
Confidence            9999999         999985544433

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=100.00  E-value=4.4e-42  Score=360.59  Aligned_cols=259  Identities=21%  Similarity=0.228  Sum_probs=200.9

Q ss_pred             ccccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcC
Q psy4039         190 VDDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVEN  267 (588)
Q Consensus       190 ~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~  267 (588)
                      .+++. ++|.+.+.||+|+||.||+|.+.  |+.||||++.....   ...            ....+.+|+.+++.+  
T Consensus        19 ~~~l~-~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~---~~~------------~~~~~~~E~~~l~~l--   80 (353)
T 3coi_A           19 AWELP-KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQ---SEI------------FAKRAYRELLLLKHM--   80 (353)
T ss_dssp             EEEEE-TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTS---SHH------------HHHHHHHHHHHHHHC--
T ss_pred             ccccC-ceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEeccccc---chH------------HHHHHHHHHHHHHhc--
Confidence            34443 88999999999999999999986  89999999853211   110            123456799999987  


Q ss_pred             CCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHH
Q psy4039         268 LPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFT  347 (588)
Q Consensus       268 l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~  347 (588)
                        +||||+++++++.+...                      .......++||||++++|.+++..   .+++.++..++.
T Consensus        81 --~h~~iv~~~~~~~~~~~----------------------~~~~~~~~lv~e~~~~~l~~~~~~---~~~~~~~~~i~~  133 (353)
T 3coi_A           81 --QHENVIGLLDVFTPASS----------------------LRNFYDFYLVMPFMQTDLQKIMGL---KFSEEKIQYLVY  133 (353)
T ss_dssp             --CCTTBCCCSEEECSCSS----------------------GGGCCCCEEEEECCSEEGGGTTTS---CCCHHHHHHHHH
T ss_pred             --CCCCcccHhheEecccc----------------------cccceeEEEEeccccCCHHHHhcC---CCCHHHHHHHHH
Confidence              89999999999876321                      001123699999999998887642   699999999999


Q ss_pred             HHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCC
Q psy4039         348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG  427 (588)
Q Consensus       348 ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~  427 (588)
                      ||+.||.|||++||+||||||+|||++.+     +.+||+|||+++.....        .....||+.|+|||++.+...
T Consensus       134 qi~~al~~LH~~~ivH~dlkp~NIl~~~~-----~~~kl~Dfg~~~~~~~~--------~~~~~~t~~y~aPE~~~~~~~  200 (353)
T 3coi_A          134 QMLKGLKYIHSAGVVHRDLKPGNLAVNED-----CELKILDFGLARHADAE--------MTGYVVTRWYRAPEVILSWMH  200 (353)
T ss_dssp             HHHHHHHHHHHTTCCCSSCCGGGEEECTT-----CCEEECSTTCTTC----------------CCSBCCSCHHHHSCCSC
T ss_pred             HHHHHHHHHHHCCcccCCCCHHHEeECCC-----CcEEEeecccccCCCCC--------ccccccCcCcCCHHHHhCcCC
Confidence            99999999999999999999999999987     79999999999764332        114578999999999876321


Q ss_pred             CccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccc---------------------------------cccccCCCC
Q psy4039         428 LFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY---------------------------------EVNALPQLN  474 (588)
Q Consensus       428 ~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~---------------------------------~~~~~~~~~  474 (588)
                           ++.++|||||||++|||++|+.||.+.......                                 ........+
T Consensus       201 -----~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (353)
T 3coi_A          201 -----YNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLF  275 (353)
T ss_dssp             -----CCTTHHHHHHHHHHHHHHHSSCSSBSSCHHHHHHHHHHHHCBCCHHHHTTCSCHHHHHHHHTSCBCSSCCTTTTC
T ss_pred             -----CCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHHhhHHHHHHHHhCcCCCCccHHHhc
Confidence                 457899999999999999999999763211000                                 001112334


Q ss_pred             CCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccCC
Q psy4039         475 TNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGA  520 (588)
Q Consensus       475 ~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~  520 (588)
                      ..+++++.+||.+||+.||++|||++++++         |||++..
T Consensus       276 ~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~---------hp~f~~~  312 (353)
T 3coi_A          276 PRASPQAADLLEKMLELDVDKRLTAAQALT---------HPFFEPF  312 (353)
T ss_dssp             TTSCHHHHHHHHHHSCSCTTTSCCHHHHHT---------SGGGTTT
T ss_pred             CCcCHHHHHHHHHHcCCCcccCCCHHHHhc---------Ccchhhc
Confidence            578999999999999999999999999999         9999743

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=100.00  E-value=6.2e-42  Score=354.94  Aligned_cols=276  Identities=22%  Similarity=0.286  Sum_probs=193.3

Q ss_pred             CCccccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhh
Q psy4039         188 PDVDDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSV  265 (588)
Q Consensus       188 ~~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l  265 (588)
                      ....++.-.+|++.+.||+|+||.||+|.+.  ++.||||++.....     .            ..+.+.+|+.++..+
T Consensus        20 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-----~------------~~~~~~~e~~~l~~l   82 (337)
T 3ll6_A           20 GQTVELGELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEE-----E------------KNRAIIQEVCFMKKL   82 (337)
T ss_dssp             TCEEEETTEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSH-----H------------HHHHHHHHHHHHHHH
T ss_pred             cceeeccCceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCch-----H------------HHHHHHHHHHHHHHh
Confidence            4555666678999999999999999999995  88999999853210     0            223456788999888


Q ss_pred             cCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHh--cCCCCHHHHH
Q psy4039         266 ENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRER--CAQLSMHERV  343 (588)
Q Consensus       266 ~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~--~~~l~~~~~~  343 (588)
                         .+||||+++++++......                    .......++++|||++|+|.+++...  ...+++.+++
T Consensus        83 ---~~h~~iv~~~~~~~~~~~~--------------------~~~~~~~~~lv~e~~~g~L~~~l~~~~~~~~~~~~~~~  139 (337)
T 3ll6_A           83 ---SGHPNIVQFCSAASIGKEE--------------------SDTGQAEFLLLTELCKGQLVEFLKKMESRGPLSCDTVL  139 (337)
T ss_dssp             ---TTSTTBCCEEEEEEECTTT--------------------STTSSEEEEEEEECCSEEHHHHHHHHHTTCSCCHHHHH
T ss_pred             ---ccCCChhhccccccccccc--------------------cccCCceEEEEEEecCCCHHHHHHHhhccCCCCHHHHH
Confidence               3599999999998653210                    11233468999999999999999762  3469999999


Q ss_pred             HHHHHHHHHHHHHHhCC--ceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccc-------cccccccCCc
Q psy4039         344 LLFTQLLEGVTHLNMHR--TAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYS-------SADIELGGNV  414 (588)
Q Consensus       344 ~i~~ql~~gL~yLH~~~--IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~-------~~~~~~~GT~  414 (588)
                      .++.||+.||.|||++|  |+||||||+|||++.+     +.+||+|||+++...........       .......||+
T Consensus       140 ~i~~qi~~~l~~LH~~~~~ivH~Dikp~NIl~~~~-----~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~  214 (337)
T 3ll6_A          140 KIFYQTCRAVQHMHRQKPPIIHRDLKVENLLLSNQ-----GTIKLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTP  214 (337)
T ss_dssp             HHHHHHHHHHHHHHTSSSCCBCCCCCGGGCEECTT-----SCEEBCCCTTCBCCSSCC----------------------
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEccCCcccEEECCC-----CCEEEecCccceeccccCcccccccccccchhhccccCCC
Confidence            99999999999999999  9999999999999987     79999999999876542221100       1112456999


Q ss_pred             cccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccccccccCCCCCCccHHHHHHHHHhhhhCCC
Q psy4039         415 ALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPS  494 (588)
Q Consensus       415 ~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~  494 (588)
                      .|+|||++.....   ..++.++|||||||++|||++|..||.................+..+++.+.++|.+||+.||.
T Consensus       215 ~y~aPE~~~~~~~---~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~  291 (337)
T 3ll6_A          215 MYRTPEIIDLYSN---FPIGEKQDIWALGCILYLLCFRQHPFEDGAKLRIVNGKYSIPPHDTQYTVFHSLIRAMLQVNPE  291 (337)
T ss_dssp             ---------CCTT---SCSSHHHHHHHHHHHHHHHHHSSCCC------------CCCCTTCCSSGGGHHHHHHHSCSSGG
T ss_pred             CcCChhhhhcccc---CCCChHHhHHHHHHHHHHHHhCCCCCcchhHHHhhcCcccCCcccccchHHHHHHHHHccCChh
Confidence            9999999842211   1144689999999999999999999976543333332223334566778899999999999999


Q ss_pred             CCCCHHHHHHHHhhhhh
Q psy4039         495 DRPSAELAATVCQLYLW  511 (588)
Q Consensus       495 ~Rps~~e~l~~L~~~~~  511 (588)
                      +|||++++++.|+....
T Consensus       292 ~Rps~~e~l~~l~~~~~  308 (337)
T 3ll6_A          292 ERLSIAEVVHQLQEIAA  308 (337)
T ss_dssp             GSCCHHHHHHHHHHHHH
T ss_pred             hCcCHHHHHHHHHHHHh
Confidence            99999999998886654

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=100.00  E-value=6.5e-42  Score=348.77  Aligned_cols=258  Identities=24%  Similarity=0.298  Sum_probs=204.8

Q ss_pred             ccccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcC
Q psy4039         190 VDDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVEN  267 (588)
Q Consensus       190 ~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~  267 (588)
                      ...+..++|.....||+|+||.||+|.+.  +..||||.+.....                 ...+.+.+|+.+++.+  
T Consensus        16 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-----------------~~~~~~~~e~~~l~~l--   76 (295)
T 2clq_A           16 EYDYEYDENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDS-----------------RYSQPLHEEIALHKHL--   76 (295)
T ss_dssp             CEEECBCTTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC--------------------HHHHHHHHHHHTC--
T ss_pred             cccccccCCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCch-----------------HHHHHHHHHHHHHHhC--
Confidence            34455566666779999999999999986  78999999854221                 1234466799999887  


Q ss_pred             CCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc--CCCCHHHHHH
Q psy4039         268 LPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC--AQLSMHERVL  344 (588)
Q Consensus       268 l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~--~~l~~~~~~~  344 (588)
                        +||||+++++++.+..                            ..++||||+ +++|.+++....  ..+++..+..
T Consensus        77 --~h~~iv~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~  126 (295)
T 2clq_A           77 --KHKNIVQYLGSFSENG----------------------------FIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGF  126 (295)
T ss_dssp             --CCTTBCCEEEEEEETT----------------------------EEEEEEECCSEEEHHHHHHHTTCCCTTCHHHHHH
T ss_pred             --CCCCEeeEeeEEEeCC----------------------------cEEEEEEeCCCCCHHHHHHhhccCCCccHHHHHH
Confidence              8999999999997632                            489999999 589999998753  3567999999


Q ss_pred             HHHHHHHHHHHHHhCCceeccCCCCcEEEcC-CCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHh
Q psy4039         345 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDC-SEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVAL  423 (588)
Q Consensus       345 i~~ql~~gL~yLH~~~IvHrDLKp~NILld~-~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~  423 (588)
                      ++.|++.||.|||++||+||||||+|||++. +     +.+||+|||+++.......     ......||+.|+|||++.
T Consensus       127 ~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~-----~~~kl~Dfg~~~~~~~~~~-----~~~~~~~~~~y~aPE~~~  196 (295)
T 2clq_A          127 YTKQILEGLKYLHDNQIVHRDIKGDNVLINTYS-----GVLKISDFGTSKRLAGINP-----CTETFTGTLQYMAPEIID  196 (295)
T ss_dssp             HHHHHHHHHHHHHHTTEECCCCSGGGEEEETTT-----CCEEECCTTTCEESCC----------CCCCCCGGGCCHHHHH
T ss_pred             HHHHHHHHHHHHHhCCEEccCCChhhEEEECCC-----CCEEEeecccccccCCCCC-----cccccCCCccccChhhhc
Confidence            9999999999999999999999999999987 4     7899999999987544211     112457999999999997


Q ss_pred             cCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccc-----ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCC
Q psy4039         424 ATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD-----YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS  498 (588)
Q Consensus       424 ~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~-----~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps  498 (588)
                      +....    ++.++|||||||++|||++|+.||........     ......+.++..+++++.+++.+||+.||++|||
T Consensus       197 ~~~~~----~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps  272 (295)
T 2clq_A          197 KGPRG----YGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFKVGMFKVHPEIPESMSAEAKAFILKCFEPDPDKRAC  272 (295)
T ss_dssp             HGGGG----CSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHHHHHHHHHHCCCCCCCTTSCHHHHHHHHHTTCSSTTTSCC
T ss_pred             CCCCC----CCcHHHHHHHHHHHHHHHHCCCCccCCCchhHHHHhhccccccccccccCCHHHHHHHHHHccCChhhCCC
Confidence            64321    34679999999999999999999975321110     1112345667789999999999999999999999


Q ss_pred             HHHHHHHHhhhhhcCCccccC
Q psy4039         499 AELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       499 ~~e~l~~L~~~~~~~h~w~~~  519 (588)
                      ++++++         |||++.
T Consensus       273 ~~~ll~---------~~~~~~  284 (295)
T 2clq_A          273 ANDLLV---------DEFLKV  284 (295)
T ss_dssp             HHHHHT---------SGGGCC
T ss_pred             HHHHhc---------Chhhhh
Confidence            999999         999973

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=100.00  E-value=7.6e-42  Score=354.28  Aligned_cols=257  Identities=22%  Similarity=0.282  Sum_probs=207.4

Q ss_pred             ccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCC
Q psy4039         194 KVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPH  271 (588)
Q Consensus       194 ~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~H  271 (588)
                      ..++|++.+.||+|+||.||+|.+.  ++.||||++........           ........+.+|+.+++.+..  .|
T Consensus        41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~-----------~~~~~~~~~~~E~~~l~~l~~--~~  107 (320)
T 3a99_A           41 LESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDW-----------GELPNGTRVPMEVVLLKKVSS--GF  107 (320)
T ss_dssp             CTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCE-----------EECTTCCEEEHHHHHHHHHCS--SS
T ss_pred             ccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhh-----------hhhhhhhHHHHHHHHHHhhcc--CC
Confidence            3488999999999999999999985  88999999964322110           000123556789999998821  47


Q ss_pred             CceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCC--CcHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4039         272 PNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYN--TDLRNYLRERCAQLSMHERVLLFTQL  349 (588)
Q Consensus       272 pNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~--gsL~~~L~~~~~~l~~~~~~~i~~ql  349 (588)
                      |||+++++++.+..                            ..++|||++.  ++|.+++.... .+++..++.++.||
T Consensus       108 ~~i~~~~~~~~~~~----------------------------~~~lv~e~~~~~~~L~~~l~~~~-~l~~~~~~~i~~qi  158 (320)
T 3a99_A          108 SGVIRLLDWFERPD----------------------------SFVLILERPEPVQDLFDFITERG-ALQEELARSFFWQV  158 (320)
T ss_dssp             CSBCCEEEEEECSS----------------------------EEEEEEECCSSEEEHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred             CCceEEEEEEecCC----------------------------cEEEEEEcCCCCccHHHHHhccC-CCCHHHHHHHHHHH
Confidence            99999999998632                            4899999994  79999998764 89999999999999


Q ss_pred             HHHHHHHHhCCceeccCCCCcEEEc-CCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCC
Q psy4039         350 LEGVTHLNMHRTAHRDLKSDNILLD-CSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGL  428 (588)
Q Consensus       350 ~~gL~yLH~~~IvHrDLKp~NILld-~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~  428 (588)
                      ++||.|||++||+||||||+|||++ .+     +.+||+|||+++.......       ....||+.|+|||++.+... 
T Consensus       159 ~~~L~~LH~~~ivH~Dlkp~NIll~~~~-----~~~kL~Dfg~~~~~~~~~~-------~~~~gt~~y~aPE~~~~~~~-  225 (320)
T 3a99_A          159 LEAVRHCHNCGVLHRDIKDENILIDLNR-----GELKLIDFGSGALLKDTVY-------TDFDGTRVYSPPEWIRYHRY-  225 (320)
T ss_dssp             HHHHHHHHHTTEECCCCSGGGEEEETTT-----TEEEECCCTTCEECCSSCB-------CCCCSCGGGSCHHHHHHSCB-
T ss_pred             HHHHHHHHHCCcEeCCCCHHHEEEeCCC-----CCEEEeeCccccccccccc-------cCCCCCccCCChHHhccCCC-
Confidence            9999999999999999999999998 44     7899999999987654211       14569999999999976542 


Q ss_pred             ccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhh
Q psy4039         429 FSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQL  508 (588)
Q Consensus       429 ~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~  508 (588)
                          .+.++|||||||++|||++|+.||.......    ......+..+++++.++|.+||+.||.+|||++++++    
T Consensus       226 ----~~~~~Di~slG~il~el~~g~~pf~~~~~~~----~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~----  293 (320)
T 3a99_A          226 ----HGRSAAVWSLGILLYDMVCGDIPFEHDEEII----RGQVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQN----  293 (320)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHSSCSCCSHHHHH----HCCCCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHT----
T ss_pred             ----CCccchHHhHHHHHHHHHHCCCCCCChhhhh----cccccccccCCHHHHHHHHHHccCChhhCcCHHHHhc----
Confidence                2356899999999999999999997642211    1122345678999999999999999999999999999    


Q ss_pred             hhhcCCccccCCCC
Q psy4039         509 YLWAPKHWLYGATP  522 (588)
Q Consensus       509 ~~~~~h~w~~~~~~  522 (588)
                           |||++....
T Consensus       294 -----hp~~~~~~~  302 (320)
T 3a99_A          294 -----HPWMQDVLL  302 (320)
T ss_dssp             -----SGGGSSCCC
T ss_pred             -----CHhhcCccC
Confidence                 999986543

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.4e-41  Score=351.79  Aligned_cols=266  Identities=21%  Similarity=0.274  Sum_probs=201.5

Q ss_pred             ccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCC
Q psy4039         194 KVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPH  271 (588)
Q Consensus       194 ~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~H  271 (588)
                      ..++|++.+.||+|+||.||+|.+.  ++.||||++.....                  ....+.+|+.+++.+   .+|
T Consensus        22 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~------------------~~~~~~~e~~~l~~l---~~h   80 (326)
T 2x7f_A           22 PAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGD------------------EEEEIKQEINMLKKY---SHH   80 (326)
T ss_dssp             CTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS------------------TTHHHHHHHHHHHHH---CCS
T ss_pred             CCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCcc------------------cHHHHHHHHHHHHhc---cCC
Confidence            3488999999999999999999994  88999999853211                  224456788888887   579


Q ss_pred             CceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCC-CcHHHHHHHh-cCCCCHHHHHHHHHHH
Q psy4039         272 PNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYN-TDLRNYLRER-CAQLSMHERVLLFTQL  349 (588)
Q Consensus       272 pNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~-gsL~~~L~~~-~~~l~~~~~~~i~~ql  349 (588)
                      |||+++++++....+                      .+....+++||||++ |+|.+++... ...+++..++.++.||
T Consensus        81 ~~i~~~~~~~~~~~~----------------------~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi  138 (326)
T 2x7f_A           81 RNIATYYGAFIKKNP----------------------PGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREI  138 (326)
T ss_dssp             TTBCCEEEEEEECC------------------------CCCCEEEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHH
T ss_pred             CCeeeeeeEEeeccC----------------------ccccceEEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHH
Confidence            999999999987421                      111335999999995 6999999864 2479999999999999


Q ss_pred             HHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCc
Q psy4039         350 LEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF  429 (588)
Q Consensus       350 ~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~  429 (588)
                      +.||.|||++||+||||||+|||++.+     +.+||+|||++........     ......||+.|+|||++..... .
T Consensus       139 ~~~l~~lH~~~ivH~dlkp~NIl~~~~-----~~~kl~Dfg~~~~~~~~~~-----~~~~~~~~~~y~aPE~~~~~~~-~  207 (326)
T 2x7f_A          139 LRGLSHLHQHKVIHRDIKGQNVLLTEN-----AEVKLVDFGVSAQLDRTVG-----RRNTFIGTPYWMAPEVIACDEN-P  207 (326)
T ss_dssp             HHHHHHHHHTTCCCCCCSGGGEEECTT-----CCEEECCCTTTC------------------CCGGGCCHHHHC------
T ss_pred             HHHHHHHHHCCccccCCcHHHEEEcCC-----CCEEEeeCcCceecCcCcc-----ccccccCCccccChhhhccccc-c
Confidence            999999999999999999999999987     7899999999976543211     1124569999999999963211 0


Q ss_pred             cCCCCCcCchhhHHHHHHHHhcCCCCCcccccccccc---cc-ccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHH
Q psy4039         430 SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE---VN-ALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATV  505 (588)
Q Consensus       430 ~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~---~~-~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~  505 (588)
                      ...++.++|||||||++|||++|..||..........   .. .....+..+++.+.++|.+||+.||.+|||++++++ 
T Consensus       208 ~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~-  286 (326)
T 2x7f_A          208 DATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRALFLIPRNPAPRLKSKKWSKKFQSFIESCLVKNHSQRPATEQLMK-  286 (326)
T ss_dssp             ---CCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSCSCSCHHHHHHHHHHCCSSGGGSCCHHHHHT-
T ss_pred             CcCCCccchHHHHHHHHHHHHhCCCCCCCCcHHHHHHHhhcCccccCCccccCHHHHHHHHHHhccChhhCCCHHHHhh-
Confidence            1124578999999999999999999997642211111   11 111224568999999999999999999999999999 


Q ss_pred             HhhhhhcCCccccCCCC
Q psy4039         506 CQLYLWAPKHWLYGATP  522 (588)
Q Consensus       506 L~~~~~~~h~w~~~~~~  522 (588)
                              |||++....
T Consensus       287 --------hp~~~~~~~  295 (326)
T 2x7f_A          287 --------HPFIRDQPN  295 (326)
T ss_dssp             --------SHHHHCCTT
T ss_pred             --------ChHHhhCcc
Confidence                    999985543

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=100.00  E-value=3.9e-42  Score=353.85  Aligned_cols=261  Identities=21%  Similarity=0.249  Sum_probs=207.9

Q ss_pred             ccccccCCeEEeeeecccCceeEEEEEEC-------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHH
Q psy4039         190 VDDVKVDDIQIGKFIAKGTNAVVYEATFR-------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLM  262 (588)
Q Consensus       190 ~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il  262 (588)
                      .+++..++|++.+.||+|+||.||+|.+.       ++.||||++.....   .             ...+.+.+|+.++
T Consensus        21 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~---~-------------~~~~~~~~E~~~l   84 (316)
T 2xir_A           21 KWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGAT---H-------------SEHRALMSELKIL   84 (316)
T ss_dssp             HHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCC---H-------------HHHHHHHHHHHHH
T ss_pred             ceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCC---c-------------HHHHHHHHHHHHH
Confidence            45566789999999999999999999863       58899999853211   0             0123456799999


Q ss_pred             hhhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCC-----
Q psy4039         263 NSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQ-----  336 (588)
Q Consensus       263 ~~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~-----  336 (588)
                      ..+   .+||||+++++++.+..                           ..+++||||+ +|+|.+++......     
T Consensus        85 ~~l---~~hp~iv~~~~~~~~~~---------------------------~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~  134 (316)
T 2xir_A           85 IHI---GHHLNVVNLLGACTKPG---------------------------GPLMVIVEFCKFGNLSTYLRSKRNEFVPYK  134 (316)
T ss_dssp             HHH---CCCTTBCCEEEEECCTT---------------------------SCCEEEEECCTTEEHHHHHHTCTTSEECC-
T ss_pred             Hhc---ccCCCeeeEEEEEecCC---------------------------CceEEEEEcCCCCcHHHHHHhccccccccc
Confidence            887   47999999999987531                           1389999999 57999999865322     


Q ss_pred             ----------CCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccc
Q psy4039         337 ----------LSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSA  406 (588)
Q Consensus       337 ----------l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~  406 (588)
                                +++..++.++.|+++||.|||++||+||||||+|||++.+     +.+||+|||+++.........   .
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dikp~Nil~~~~-----~~~kl~Dfg~~~~~~~~~~~~---~  206 (316)
T 2xir_A          135 VAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEK-----NVVKICDFGLARDIYKDPDYV---R  206 (316)
T ss_dssp             ------CTTCEEHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGG-----GCEEECCCGGGSCTTTCTTSE---E
T ss_pred             ccchhhhccccCHHHHHHHHHHHHHHHHHHHhCCcccccCccceEEECCC-----CCEEECCCccccccccCccce---e
Confidence                      8999999999999999999999999999999999999887     799999999998754422211   1


Q ss_pred             cccccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc----ccccccCCCCCCccHHH
Q psy4039         407 DIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD----YEVNALPQLNTNVPEVM  481 (588)
Q Consensus       407 ~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~----~~~~~~~~~~~~~~~~l  481 (588)
                      .....||+.|+|||++.+..      ++.++|||||||++|||++ |..||.+......    .........+..+++++
T Consensus       207 ~~~~~~t~~y~aPE~~~~~~------~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  280 (316)
T 2xir_A          207 KGDARLPLKWMAPETIFDRV------YTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEM  280 (316)
T ss_dssp             ETTEEECGGGCCHHHHHHCC------CCHHHHHHHHHHHHHHHHTTSCCSSTTCCCSHHHHHHHHHTCCCCCCTTCCHHH
T ss_pred             ccCCCcceeecCchhhcccc------ccchhHHHHHHHHHHHHHhCCCCCCcccchhHHHHHHhccCccCCCCCCCCHHH
Confidence            12456899999999998765      4568999999999999998 9999976432211    12223345567789999


Q ss_pred             HHHHHHhhhhCCCCCCCHHHHHHHHhhhh
Q psy4039         482 RRLVAKLLENDPSDRPSAELAATVCQLYL  510 (588)
Q Consensus       482 ~~Li~~~L~~dP~~Rps~~e~l~~L~~~~  510 (588)
                      .+++.+||+.||.+|||++++++.|+..+
T Consensus       281 ~~li~~~l~~dp~~Rps~~ell~~L~~~~  309 (316)
T 2xir_A          281 YQTMLDCWHGEPSQRPTFSELVEHLGNLL  309 (316)
T ss_dssp             HHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence            99999999999999999999999887654

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=100.00  E-value=8.3e-42  Score=355.76  Aligned_cols=262  Identities=22%  Similarity=0.263  Sum_probs=209.5

Q ss_pred             CCccccccCCeEEeeeecccCceeEEEEEEC---------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhH
Q psy4039         188 PDVDDVKVDDIQIGKFIAKGTNAVVYEATFR---------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNE  258 (588)
Q Consensus       188 ~~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~---------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~E  258 (588)
                      ...+++..++|++++.||+|+||.||+|.+.         +..||||++....   ..             .....+.+|
T Consensus        27 ~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~---~~-------------~~~~~~~~E   90 (334)
T 2pvf_A           27 DPKWEFPRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDA---TE-------------KDLSDLVSE   90 (334)
T ss_dssp             CTTTBCCGGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTC---CH-------------HHHHHHHHH
T ss_pred             CccccCCHhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCC---cH-------------HHHHHHHHH
Confidence            4557777899999999999999999999874         5689999985321   10             012345678


Q ss_pred             HHHHhhhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc---
Q psy4039         259 DMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC---  334 (588)
Q Consensus       259 i~il~~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~---  334 (588)
                      +.+++.+   .+||||+++++++.+..                            .+++||||+ +|+|.+++....   
T Consensus        91 ~~~l~~l---~~hp~iv~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~~~~  139 (334)
T 2pvf_A           91 MEMMKMI---GKHKNIINLLGACTQDG----------------------------PLYVIVEYASKGNLREYLRARRPPG  139 (334)
T ss_dssp             HHHHHHH---CCCTTBCCEEEEECSSS----------------------------CCEEEEECCTTCBHHHHHHTTSCTT
T ss_pred             HHHHHHh---hcCCCEeeEEEEEccCC----------------------------ceEEEEECCCCCcHHHHHHHhcccc
Confidence            9999887   58999999999987632                            389999999 579999998653   


Q ss_pred             ------------CCCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccc
Q psy4039         335 ------------AQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQ  402 (588)
Q Consensus       335 ------------~~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~  402 (588)
                                  ..+++.+++.++.||++||.|||++||+||||||+|||++.+     +.+||+|||+++.........
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~-----~~~kL~Dfg~~~~~~~~~~~~  214 (334)
T 2pvf_A          140 MEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTEN-----NVMKIADFGLARDINNIDYYK  214 (334)
T ss_dssp             CCSCC--------CCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTT-----CCEEECCCTTCEECTTTSSEE
T ss_pred             ccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCccceEEEcCC-----CCEEEcccccccccccccccc
Confidence                        248999999999999999999999999999999999999987     799999999998765432211


Q ss_pred             cccccccccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCcc
Q psy4039         403 YSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVP  478 (588)
Q Consensus       403 ~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~  478 (588)
                         ......||+.|+|||++.+..      ++.++|||||||++|||++ |..||.+......   ......+..+..++
T Consensus       215 ---~~~~~~~~~~y~aPE~~~~~~------~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (334)
T 2pvf_A          215 ---KTTNGRLPVKWMAPEALFDRV------YTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPANCT  285 (334)
T ss_dssp             ---CCSCCCCCGGGCCHHHHHHCE------ECHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHHTCCCCCCTTCC
T ss_pred             ---ccCCCCcccceeChHHhcCCC------cChHHHHHHHHHHHHHHHhCCCCCcCcCCHHHHHHHHhcCCCCCCCccCC
Confidence               112345789999999997654      4568999999999999999 9999976432211   11223345667899


Q ss_pred             HHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhh
Q psy4039         479 EVMRRLVAKLLENDPSDRPSAELAATVCQLYL  510 (588)
Q Consensus       479 ~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~  510 (588)
                      +++.+++.+||+.||.+|||++++++.|+..+
T Consensus       286 ~~l~~li~~~l~~dp~~Rps~~ell~~L~~l~  317 (334)
T 2pvf_A          286 NELYMMMRDCWHAVPSQRPTFKQLVEDLDRIL  317 (334)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence            99999999999999999999999999888664

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=100.00  E-value=3.4e-42  Score=362.86  Aligned_cols=266  Identities=15%  Similarity=0.219  Sum_probs=202.5

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCC
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENL  268 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l  268 (588)
                      ..+..++|++.+.||+|+||+||+|.+.  ++.||||++....                  .....+.+|+.+++.+...
T Consensus        14 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~------------------~~~~~~~~e~~~l~~l~~~   75 (373)
T 1q8y_A           14 EPYKDARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDK------------------VYTEAAEDEIKLLQRVNDA   75 (373)
T ss_dssp             CEETTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH------------------HHHHHHHHHHHHHHHHHHT
T ss_pred             CcccCCeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCCc------------------cchhhhhHHHHHHHHhhcc
Confidence            4455689999999999999999999985  8999999984211                  0123345677777776211


Q ss_pred             -------CCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHh-cCCCCHH
Q psy4039         269 -------PPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRER-CAQLSMH  340 (588)
Q Consensus       269 -------~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~-~~~l~~~  340 (588)
                             ..||||+++++++....                        .....++++||+++++|.+++... ...+++.
T Consensus        76 ~~~~~~~~~~~~i~~~~~~~~~~~------------------------~~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~  131 (373)
T 1q8y_A           76 DNTKEDSMGANHILKLLDHFNHKG------------------------PNGVHVVMVFEVLGENLLALIKKYEHRGIPLI  131 (373)
T ss_dssp             CCSHHHHHHHTTBCCCCEEEEEEE------------------------TTEEEEEEEECCCCEEHHHHHHHTTTSCCCHH
T ss_pred             cccchhccccchHHHHHHHhhccC------------------------CCCceEEEEEecCCCCHHHHHHHhhccCCcHH
Confidence                   13899999999998632                        112358999999999999999874 3369999


Q ss_pred             HHHHHHHHHHHHHHHHHhC-CceeccCCCCcEEEcCCCC-CCCCceeeeccccccccCCCCccccccccccccCCccccc
Q psy4039         341 ERVLLFTQLLEGVTHLNMH-RTAHRDLKSDNILLDCSED-NTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMA  418 (588)
Q Consensus       341 ~~~~i~~ql~~gL~yLH~~-~IvHrDLKp~NILld~~~~-~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~A  418 (588)
                      .+..++.||+.||.|||++ ||+||||||+|||++.+.. ...+.+||+|||+++......        ....||+.|+|
T Consensus       132 ~~~~i~~qi~~aL~~lH~~~~ivH~Dikp~NIll~~~~~~~~~~~~kl~Dfg~a~~~~~~~--------~~~~~t~~y~a  203 (373)
T 1q8y_A          132 YVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHY--------TNSIQTREYRS  203 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCEECSCCSGGGEEEEEEETTTTEEEEEECCCTTCEETTBCC--------CSCCSCGGGCC
T ss_pred             HHHHHHHHHHHHHHHHHhcCCEEecCCChHHeEEeccCCCcCcceEEEcccccccccCCCC--------CCCCCCccccC
Confidence            9999999999999999998 9999999999999964321 111579999999998754321        13568999999


Q ss_pred             hhHHhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccc---------------------------------
Q psy4039         419 PEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY---------------------------------  465 (588)
Q Consensus       419 PE~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~---------------------------------  465 (588)
                      ||++.+..      ++.++|||||||++|||++|..||.........                                 
T Consensus       204 PE~~~~~~------~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  277 (373)
T 1q8y_A          204 PEVLLGAP------WGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNS  277 (373)
T ss_dssp             HHHHHTCC------CCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC
T ss_pred             cHHHhCCC------CCchHhHHHHHHHHHHHHhCCCCCCCCcccccCChHHHHHHHHHhcCCCCHHHHhccchhhhhcCC
Confidence            99998765      457899999999999999999999753210000                                 


Q ss_pred             ----c-------------ccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccCCC
Q psy4039         466 ----E-------------VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGAT  521 (588)
Q Consensus       466 ----~-------------~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~~  521 (588)
                          .             ......++..+++++.+||.+||+.||++|||++++++         |||++...
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~---------hp~f~~~~  341 (373)
T 1q8y_A          278 RGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVN---------HPWLKDTL  341 (373)
T ss_dssp             --CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHT---------CGGGTTCT
T ss_pred             cchhcccccccccchhhhhhhcccCCcchHHHHHHHHHHHhccCccccCCHHHHhh---------Chhhhccc
Confidence                0             00011233456788999999999999999999999999         99998543

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.5e-41  Score=352.73  Aligned_cols=262  Identities=23%  Similarity=0.293  Sum_probs=194.6

Q ss_pred             cCCeEEeeeecccCceeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCce
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNV  274 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNI  274 (588)
                      .++|++.+.||+|+||.||+|.+.++.||||++....                    .....+|.+++..+  ..+||||
T Consensus        36 ~~~y~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~--------------------~~~~~~e~~~~~~~--~~~h~~i   93 (337)
T 3mdy_A           36 AKQIQMVKQIGKGRYGEVWMGKWRGEKVAVKVFFTTE--------------------EASWFRETEIYQTV--LMRHENI   93 (337)
T ss_dssp             HHHCEEEEEEEEETTEEEEEEEETTEEEEEEEEEGGG--------------------HHHHHHHHHHHTST--TCCCTTB
T ss_pred             ccceEEEeEeecCCCeEEEEEEECCceEEEEEEeccc--------------------cchhhhHHHHHHHH--hhcCCCe
Confidence            3789999999999999999999999999999984311                    11122344444332  1489999


Q ss_pred             EEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         275 VVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       275 V~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      +++++++.+..                        .....+++||||+ +|+|.+++...  .+++..++.++.|++.||
T Consensus        94 ~~~~~~~~~~~------------------------~~~~~~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~i~~~i~~~l  147 (337)
T 3mdy_A           94 LGFIAADIKGT------------------------GSWTQLYLITDYHENGSLYDYLKST--TLDAKSMLKLAYSSVSGL  147 (337)
T ss_dssp             CCEEEEEEESC------------------------GGGCEEEEEECCCTTCBHHHHHHHC--CBCHHHHHHHHHHHHHHH
T ss_pred             eeEEEEEccCC------------------------CCCCceEEEEeccCCCcHHHHhhcc--CCCHHHHHHHHHHHHHHH
Confidence            99999988732                        1223699999999 57999999765  799999999999999999


Q ss_pred             HHHHhC--------CceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcC
Q psy4039         354 THLNMH--------RTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALAT  425 (588)
Q Consensus       354 ~yLH~~--------~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~  425 (588)
                      .|||++        ||+||||||+|||++.+     +.+||+|||+|+......... ........||+.|+|||++.+.
T Consensus       148 ~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~-----~~~kl~Dfg~a~~~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~  221 (337)
T 3mdy_A          148 CHLHTEIFSTQGKPAIAHRDLKSKNILVKKN-----GTCCIADLGLAVKFISDTNEV-DIPPNTRVGTKRYMPPEVLDES  221 (337)
T ss_dssp             HHHHSCBCSTTCBCCEECSCCCGGGEEECTT-----SCEEECCCTTCEECC----------CCSSCSCGGGCCHHHHTTC
T ss_pred             HHHHHhhhhhccCCCEEecccchHHEEECCC-----CCEEEEeCCCceeeccccccc-cCCCCCCccCcceeChhhcccc
Confidence            999998        99999999999999987     799999999997754422111 1111245799999999999766


Q ss_pred             CCCccCCCCCcCchhhHHHHHHHHhcC----------CCCCcccccccc---------ccccccCCCC-----CCccHHH
Q psy4039         426 PGLFSFVNYSKSDAWTAGTVAYEIFGH----------DNPFYQSARNTD---------YEVNALPQLN-----TNVPEVM  481 (588)
Q Consensus       426 ~~~~~~~~~~ksDVwS~Gvil~ElltG----------~~Pf~~~~~~~~---------~~~~~~~~~~-----~~~~~~l  481 (588)
                      ........+.++|||||||++|||++|          ..||........         ......+.++     ..+++++
T Consensus       222 ~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  301 (337)
T 3mdy_A          222 LNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYHDLVPSDPSYEDMREIVCIKKLRPSFPNRWSSDECLRQM  301 (337)
T ss_dssp             CCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGGGGGSHHHHHH
T ss_pred             cCCccccCccccchHHHHHHHHHHHhccCcccccccccccHhhhcCCCCchhhhHHHHhhhccCccccccchhhHHHHHH
Confidence            532110011248999999999999999          666654211110         0011122222     2567889


Q ss_pred             HHHHHHhhhhCCCCCCCHHHHHHHHhhhh
Q psy4039         482 RRLVAKLLENDPSDRPSAELAATVCQLYL  510 (588)
Q Consensus       482 ~~Li~~~L~~dP~~Rps~~e~l~~L~~~~  510 (588)
                      .++|.+||+.||.+|||++++++.|+.+.
T Consensus       302 ~~li~~~l~~dP~~Rps~~ell~~L~~l~  330 (337)
T 3mdy_A          302 GKLMTECWAHNPASRLTALRVKKTLAKMS  330 (337)
T ss_dssp             HHHHHHHSCSSGGGSCCHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhChhhCCCHHHHHHHHHHHH
Confidence            99999999999999999999999888654

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=100.00  E-value=5.5e-42  Score=353.07  Aligned_cols=278  Identities=19%  Similarity=0.243  Sum_probs=195.9

Q ss_pred             CccccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhc
Q psy4039         189 DVDDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVE  266 (588)
Q Consensus       189 ~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~  266 (588)
                      ....+.+++|++.+.||+|+||.||+|.+.  ++.||||++......   ..            ..+.+.++..+++.+ 
T Consensus        18 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~---~~------------~~~~~~~~~~~~~~~-   81 (318)
T 2dyl_A           18 QRYQAEINDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNK---EE------------NKRILMDLDVVLKSH-   81 (318)
T ss_dssp             SEEECCGGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCH---HH------------HHHHHHHHHHHHHTT-
T ss_pred             hhhhhhhccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccc---hH------------HHHHHHHHHHHHHhc-
Confidence            455667799999999999999999999996  889999999643211   10            011122233445544 


Q ss_pred             CCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHH
Q psy4039         267 NLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLF  346 (588)
Q Consensus       267 ~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~  346 (588)
                         +||||+++++++.+..                            ..++||||+++.+..+.......+++..+..++
T Consensus        82 ---~h~~i~~~~~~~~~~~----------------------------~~~lv~e~~~~~~~~l~~~~~~~~~~~~~~~~~  130 (318)
T 2dyl_A           82 ---DCPYIVQCFGTFITNT----------------------------DVFIAMELMGTCAEKLKKRMQGPIPERILGKMT  130 (318)
T ss_dssp             ---TCTTBCCEEEEEECSS----------------------------EEEEEECCCSEEHHHHHHHHTSCCCHHHHHHHH
T ss_pred             ---CCCceeeEEEEEecCC----------------------------cEEEEEeccCCcHHHHHHHhccCCCHHHHHHHH
Confidence               8999999999987632                            489999999777777776655589999999999


Q ss_pred             HHHHHHHHHHHhC-CceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcC
Q psy4039         347 TQLLEGVTHLNMH-RTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALAT  425 (588)
Q Consensus       347 ~ql~~gL~yLH~~-~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~  425 (588)
                      .|++.||.|||++ ||+||||||+|||++.+     +.+||+|||++........      .....||+.|+|||++...
T Consensus       131 ~~i~~~l~~lH~~~~i~H~dlkp~Nil~~~~-----~~~kl~dfg~~~~~~~~~~------~~~~~~~~~y~aPE~~~~~  199 (318)
T 2dyl_A          131 VAIVKALYYLKEKHGVIHRDVKPSNILLDER-----GQIKLCDFGISGRLVDDKA------KDRSAGCAAYMAPERIDPP  199 (318)
T ss_dssp             HHHHHHHHHHHHHHCCCCCCCCGGGEEECTT-----SCEEECCCTTC--------------------CCTTCCHHHHC--
T ss_pred             HHHHHHHHHHHhhCCEEeCCCCHHHEEECCC-----CCEEEEECCCchhccCCcc------ccccCCCccccChhhcccc
Confidence            9999999999995 99999999999999987     7999999999976544221      1135699999999999532


Q ss_pred             CCCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccc----ccccccCCC--CCCccHHHHHHHHHhhhhCCCCCCCH
Q psy4039         426 PGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD----YEVNALPQL--NTNVPEVMRRLVAKLLENDPSDRPSA  499 (588)
Q Consensus       426 ~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~----~~~~~~~~~--~~~~~~~l~~Li~~~L~~dP~~Rps~  499 (588)
                      .. ....++.++|||||||++|||++|+.||........    ......+.+  ...+++++.++|.+||+.||.+|||+
T Consensus       200 ~~-~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~  278 (318)
T 2dyl_A          200 DP-TKPDYDIRADVWSLGISLVELATGQFPYKNCKTDFEVLTKVLQEEPPLLPGHMGFSGDFQSFVKDCLTKDHRKRPKY  278 (318)
T ss_dssp             -------CCTHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHHSCCCCCCSSSCCCHHHHHHHHHHTCSCTTTSCCH
T ss_pred             cc-cccCCccccchhhHHHHHHHHHhCCCCCCCCCccHHHHHHHhccCCCCCCccCCCCHHHHHHHHHHccCChhHCcCH
Confidence            11 011145789999999999999999999976321111    111111222  24589999999999999999999999


Q ss_pred             HHHHHHHhhhhhcCCccccCCCCChhHHHHHHHhh
Q psy4039         500 ELAATVCQLYLWAPKHWLYGATPSHNEIMQWLLTL  534 (588)
Q Consensus       500 ~e~l~~L~~~~~~~h~w~~~~~~~~~~~~~~l~~~  534 (588)
                      +++++         |||++.......++..|+...
T Consensus       279 ~~ll~---------h~~~~~~~~~~~~~~~~~~~~  304 (318)
T 2dyl_A          279 NKLLE---------HSFIKRYETLEVDVASWFKDV  304 (318)
T ss_dssp             HHHTT---------SHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHhh---------CHHHHhcccccchhHHHhhcc
Confidence            99998         999985444445566666654

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=100.00  E-value=7e-42  Score=379.69  Aligned_cols=257  Identities=19%  Similarity=0.265  Sum_probs=210.3

Q ss_pred             CCccccccCCeEEeeeecccCceeEEEEEEC-CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhc
Q psy4039         188 PDVDDVKVDDIQIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVE  266 (588)
Q Consensus       188 ~~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~  266 (588)
                      ...|++..++|++.+.||+|+||.||+|.+. +..||||++.....                  ..+.+.+|+.+|+.+ 
T Consensus       259 ~~~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~------------------~~~~~~~E~~~l~~l-  319 (535)
T 2h8h_A          259 KDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM------------------SPEAFLQEAQVMKKL-  319 (535)
T ss_dssp             TTCSBCCGGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTSS------------------CHHHHHHHHHHHHHC-
T ss_pred             ccceecchhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCCC------------------CHHHHHHHHHHHHhC-
Confidence            4668888899999999999999999999998 46899999953221                  224567899999998 


Q ss_pred             CCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh-cCCCCHHHHHH
Q psy4039         267 NLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER-CAQLSMHERVL  344 (588)
Q Consensus       267 ~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~-~~~l~~~~~~~  344 (588)
                         +|||||++++++.+.                             .+++||||+ +|+|.++|... ...+++.+++.
T Consensus       320 ---~hpniv~~~~~~~~~-----------------------------~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~  367 (535)
T 2h8h_A          320 ---RHEKLVQLYAVVSEE-----------------------------PIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVD  367 (535)
T ss_dssp             ---CCTTBCCEEEEECSS-----------------------------SCEEEECCCTTEEHHHHHSHHHHTTCCHHHHHH
T ss_pred             ---CCCCEeeEEEEEeec-----------------------------cceEeeehhcCCcHHHHHhhcCCCCCCHHHHHH
Confidence               899999999998652                             279999999 57999999754 34699999999


Q ss_pred             HHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhc
Q psy4039         345 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALA  424 (588)
Q Consensus       345 i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~  424 (588)
                      ++.||+.||.|||+++|+||||||+|||++.+     +.+||+|||+++........    ......+|+.|+|||++..
T Consensus       368 i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~-----~~~kl~DFG~a~~~~~~~~~----~~~~~~~~~~y~aPE~~~~  438 (535)
T 2h8h_A          368 MAAQIASGMAYVERMNYVHRDLRAANILVGEN-----LVCKVADFGLARLIEDNEYT----ARQGAKFPIKWTAPEAALY  438 (535)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCSGGGEEECGG-----GCEEECCTTSTTTCCCHHHH----TTCSTTSCGGGSCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCeeCCCCCHhhEEEcCC-----CcEEEcccccceecCCCcee----cccCCcCcccccCHHHhcc
Confidence            99999999999999999999999999999887     79999999999876432110    1113457889999999987


Q ss_pred             CCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHH
Q psy4039         425 TPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE  500 (588)
Q Consensus       425 ~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~  500 (588)
                      ..      ++.++|||||||++|||++ |+.||.+......   .........+..+++++.+||.+||+.||++|||++
T Consensus       439 ~~------~~~~sDvwSlGv~l~el~t~g~~P~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~  512 (535)
T 2h8h_A          439 GR------FTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFE  512 (535)
T ss_dssp             CC------CCHHHHHHHHHHHHHHHTTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             CC------CCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCChhHCcCHH
Confidence            65      4578999999999999999 9999976422211   122233455678999999999999999999999999


Q ss_pred             HHHHHHhhhh
Q psy4039         501 LAATVCQLYL  510 (588)
Q Consensus       501 e~l~~L~~~~  510 (588)
                      ++++.|+.++
T Consensus       513 ~l~~~L~~~~  522 (535)
T 2h8h_A          513 YLQAFLEDYF  522 (535)
T ss_dssp             HHHHHHHTSS
T ss_pred             HHHHHHHHHh
Confidence            9999888554

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=100.00  E-value=1.3e-41  Score=384.61  Aligned_cols=260  Identities=22%  Similarity=0.234  Sum_probs=203.9

Q ss_pred             ccccccCCeEEe-eeecccCceeEEEEEEC----CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhh
Q psy4039         190 VDDVKVDDIQIG-KFIAKGTNAVVYEATFR----GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNS  264 (588)
Q Consensus       190 ~~~i~~~~~~~~-~~IG~G~fG~Vy~a~~~----g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~  264 (588)
                      .+.+..+.+.+. +.||+|+||.||+|.+.    ++.||||+++.....               ....+.+.+|+.+|+.
T Consensus       362 ~~~~~~~~~~l~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~---------------~~~~~~~~~E~~il~~  426 (635)
T 4fl3_A          362 EVYLDRKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEAND---------------PALKDELLAEANVMQQ  426 (635)
T ss_dssp             SSBCCGGGEEEEEEEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGC---------------GGGHHHHHHHHHHHHH
T ss_pred             cccccchhccccCCEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCC---------------HHHHHHHHHHHHHHHh
Confidence            344454556554 48999999999999764    578999999532111               1123557789999999


Q ss_pred             hcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHH
Q psy4039         265 VENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERV  343 (588)
Q Consensus       265 l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~  343 (588)
                      +    +|||||++++++.+.                             ..++||||+ +|+|.+++.... .+++.+++
T Consensus       427 l----~hpnIv~l~~~~~~~-----------------------------~~~lv~E~~~~g~L~~~l~~~~-~l~~~~~~  472 (635)
T 4fl3_A          427 L----DNPYIVRMIGICEAE-----------------------------SWMLVMEMAELGPLNKYLQQNR-HVKDKNII  472 (635)
T ss_dssp             C----CCTTBCCEEEEEESS-----------------------------SEEEEEECCTTEEHHHHHHHCT-TCCHHHHH
T ss_pred             C----CCCCEeeEEEEEecC-----------------------------CEEEEEEccCCCCHHHHHhhCC-CCCHHHHH
Confidence            8    899999999998652                             288999999 689999997654 79999999


Q ss_pred             HHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHh
Q psy4039         344 LLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVAL  423 (588)
Q Consensus       344 ~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~  423 (588)
                      .|+.||+.||.|||++||+||||||+|||++.+     +.+||+|||+|+........  ........||+.|+|||++.
T Consensus       473 ~i~~qi~~~L~yLH~~~iiHrDLkp~NILl~~~-----~~~kL~DFGla~~~~~~~~~--~~~~~~~~~t~~y~APE~~~  545 (635)
T 4fl3_A          473 ELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQ-----HYAKISDFGLSKALRADENY--YKAQTHGKWPVKWYAPECIN  545 (635)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEET-----TEEEECCTTHHHHTTC---------------CGGGSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCEeCCCCChHhEEEeCC-----CCEEEEEcCCccccccCccc--cccccCCCCceeeeChhhhc
Confidence            999999999999999999999999999999988     79999999999876543221  11112345788999999998


Q ss_pred             cCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCH
Q psy4039         424 ATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSA  499 (588)
Q Consensus       424 ~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~  499 (588)
                      +..      ++.++|||||||++|||++ |+.||.+......   ......+..+..+|+++.+||.+||+.||++||++
T Consensus       546 ~~~------~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~dP~~RPs~  619 (635)
T 4fl3_A          546 YYK------FSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAGCPREMYDLMNLCWTYDVENRPGF  619 (635)
T ss_dssp             HCC------CCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSTTTSCCH
T ss_pred             CCC------CCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCHhHCcCH
Confidence            765      4578999999999999998 9999977432221   22233455677899999999999999999999999


Q ss_pred             HHHHHHHhhhhh
Q psy4039         500 ELAATVCQLYLW  511 (588)
Q Consensus       500 ~e~l~~L~~~~~  511 (588)
                      +++++.|+.+++
T Consensus       620 ~~l~~~L~~~~~  631 (635)
T 4fl3_A          620 AAVELRLRNYYY  631 (635)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999998887654

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.6e-41  Score=349.45  Aligned_cols=256  Identities=21%  Similarity=0.292  Sum_probs=201.0

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      .++|++.+.||+|+||.||+|.+.  ++.||||++.........           .......+.+|+.++..+....+||
T Consensus        30 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~-----------~~~~~~~~~~e~~~l~~l~~~~~h~   98 (312)
T 2iwi_A           30 EAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWS-----------PLSDSVTCPLEVALLWKVGAGGGHP   98 (312)
T ss_dssp             ---CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC-------------------CCCCHHHHHHHHHHSSCCCS
T ss_pred             hhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccc-----------cchhhHHHHHHHHHHHhhcccCCCC
Confidence            488999999999999999999885  789999998543221110           0012345667999998885555899


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEec-C-CCcHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKK-Y-NTDLRNYLRERCAQLSMHERVLLFTQLL  350 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~-~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~  350 (588)
                      ||+++++++.+..                            ..++|||+ + +++|.+++.... .+++..++.++.||+
T Consensus        99 ~i~~~~~~~~~~~----------------------------~~~~v~e~~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~  149 (312)
T 2iwi_A           99 GVIRLLDWFETQE----------------------------GFMLVLERPLPAQDLFDYITEKG-PLGEGPSRCFFGQVV  149 (312)
T ss_dssp             SBCCEEEEC---------------------------------CEEEEECCSSEEEHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred             CeeeEEEEEecCC----------------------------eEEEEEEecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence            9999999987632                            37899998 4 589999998765 799999999999999


Q ss_pred             HHHHHHHhCCceeccCCCCcEEEc-CCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCc
Q psy4039         351 EGVTHLNMHRTAHRDLKSDNILLD-CSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF  429 (588)
Q Consensus       351 ~gL~yLH~~~IvHrDLKp~NILld-~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~  429 (588)
                      .||.|||++||+||||||+|||++ .+     +.+||+|||+++.......       ....||+.|+|||++.+...  
T Consensus       150 ~~l~~lH~~~i~H~dlkp~Nil~~~~~-----~~~kl~dfg~~~~~~~~~~-------~~~~~~~~y~aPE~~~~~~~--  215 (312)
T 2iwi_A          150 AAIQHCHSRGVVHRDIKDENILIDLRR-----GCAKLIDFGSGALLHDEPY-------TDFDGTRVYSPPEWISRHQY--  215 (312)
T ss_dssp             HHHHHHHHHTEECCCCSGGGEEEETTT-----TEEEECCCSSCEECCSSCB-------CCCCSCTTTSCHHHHHHSCB--
T ss_pred             HHHHHHHHCCeeecCCChhhEEEeCCC-----CeEEEEEcchhhhcccCcc-------cccCCcccccCceeeecCCC--
Confidence            999999999999999999999998 55     7899999999987654221       14569999999999976542  


Q ss_pred             cCCCCCcCchhhHHHHHHHHhcCCCCCccccccccccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhh
Q psy4039         430 SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLY  509 (588)
Q Consensus       430 ~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~  509 (588)
                         .+.++|||||||++|||++|+.||.......    .....++..+++++.++|.+||+.||++|||++++++     
T Consensus       216 ---~~~~~Di~slG~il~~l~~g~~pf~~~~~~~----~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~-----  283 (312)
T 2iwi_A          216 ---HALPATVWSLGILLYDMVCGDIPFERDQEIL----EAELHFPAHVSPDCCALIRRCLAPKPSSRPSLEEILL-----  283 (312)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHSSCSCCSHHHHH----HTCCCCCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHH-----
T ss_pred             ---CCccchHHHHHHHHHHHHHCCCCCCChHHHh----hhccCCcccCCHHHHHHHHHHccCChhhCcCHHHHhc-----
Confidence               1247999999999999999999997642211    1223456778999999999999999999999999999     


Q ss_pred             hhcCCccccCC
Q psy4039         510 LWAPKHWLYGA  520 (588)
Q Consensus       510 ~~~~h~w~~~~  520 (588)
                          |||++..
T Consensus       284 ----~~~~~~~  290 (312)
T 2iwi_A          284 ----DPWMQTP  290 (312)
T ss_dssp             ----STTTCC-
T ss_pred             ----ChhhcCc
Confidence                9999843

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=100.00  E-value=1.6e-41  Score=351.85  Aligned_cols=258  Identities=20%  Similarity=0.224  Sum_probs=199.5

Q ss_pred             cccCCeEEeeeecccCceeEEEEEEC---CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcC--
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFR---GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVEN--  267 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~---g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~--  267 (588)
                      +..++|++.+.||+|+||.||+|.+.   ++.||||++....      .            ..+.+.+|+.+++.+..  
T Consensus        11 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~------~------------~~~~~~~e~~~l~~l~~~~   72 (339)
T 1z57_A           11 VLSARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVD------R------------YCEAARSEIQVLEHLNTTD   72 (339)
T ss_dssp             EETTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSSH------H------------HHHHHHHHHHHHHHHHHHC
T ss_pred             CccCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecCC------c------------hhHHHHHHHHHHHHhhhcC
Confidence            34489999999999999999999883   7899999984211      0            12334568888877631  


Q ss_pred             CCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhc-CCCCHHHHHHHH
Q psy4039         268 LPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERC-AQLSMHERVLLF  346 (588)
Q Consensus       268 l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~-~~l~~~~~~~i~  346 (588)
                      ...|++|+++++++.+..                            ..++||||++++|.+++.... ..+++.++..++
T Consensus        73 ~~~~~~i~~~~~~~~~~~----------------------------~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~  124 (339)
T 1z57_A           73 PNSTFRCVQMLEWFEHHG----------------------------HICIVFELLGLSTYDFIKENGFLPFRLDHIRKMA  124 (339)
T ss_dssp             TTCTTCBCCEEEEEEETT----------------------------EEEEEEECCCCBHHHHHHHTTTCCCCHHHHHHHH
T ss_pred             CCCceeeEeeecccccCC----------------------------cEEEEEcCCCCCHHHHHHhcCCCCCcHHHHHHHH
Confidence            224567999999987632                            599999999999999998763 368999999999


Q ss_pred             HHHHHHHHHHHhCCceeccCCCCcEEEcCCCCC--------------CCCceeeeccccccccCCCCccccccccccccC
Q psy4039         347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDN--------------TCPQLVITDFGSSYTNKSGLSMQYSSADIELGG  412 (588)
Q Consensus       347 ~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~--------------~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~G  412 (588)
                      .||+.||.|||++||+||||||+|||++.+...              ..+.+||+|||+++......        ....|
T Consensus       125 ~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~--------~~~~g  196 (339)
T 1z57_A          125 YQICKSVNFLHSNKLTHTDLKPENILFVQSDYTEAYNPKIKRDERTLINPDIKVVDFGSATYDDEHH--------STLVS  196 (339)
T ss_dssp             HHHHHHHHHHHHTTEECCCCCGGGEEESCCCEEEEEC----CEEEEESCCCEEECCCSSCEETTSCC--------CSSCS
T ss_pred             HHHHHHHHHHHHCCCcCCCCCHHHEEEeccccccccCCccccccccccCCCceEeeCcccccCcccc--------ccccC
Confidence            999999999999999999999999999874200              01679999999997644321        14579


Q ss_pred             CccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccccc--------------------------
Q psy4039         413 NVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--------------------------  466 (588)
Q Consensus       413 T~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~--------------------------  466 (588)
                      |+.|+|||++.+..      ++.++|||||||++|||++|..||..........                          
T Consensus       197 t~~y~aPE~~~~~~------~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  270 (339)
T 1z57_A          197 TRHYRAPEVILALG------WSQPCDVWSIGCILIEYYLGFTVFPTHDSKEHLAMMERILGPLPKHMIQKTRKRKYFHHD  270 (339)
T ss_dssp             CGGGCCHHHHTTSC------CCTHHHHHHHHHHHHHHHHSSCSCCCSCHHHHHHHHHHHHCSCCHHHHHHCSCGGGEETT
T ss_pred             CccccChHHhhCCC------CCcchhhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHhhccchhHHhhc
Confidence            99999999997654      4578999999999999999999997532110000                          


Q ss_pred             --------------------ccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccC
Q psy4039         467 --------------------VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       467 --------------------~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~  519 (588)
                                          ...........++++.+||.+||+.||.+|||++|+++         |||++.
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~---------hp~f~~  334 (339)
T 1z57_A          271 RLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKRITLREALK---------HPFFDL  334 (339)
T ss_dssp             EECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTT---------SGGGGG
T ss_pred             cccccccccccchhhhcCcchhhhcccchhhHHHHHHHHHHHhCcCcccccCHHHHhc---------CHHHHH
Confidence                                00000112334678999999999999999999999998         999973

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=100.00  E-value=1.5e-41  Score=351.68  Aligned_cols=256  Identities=21%  Similarity=0.243  Sum_probs=204.1

Q ss_pred             cccCCeEEeeeecccCceeEEEEEEC------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhc
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFR------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVE  266 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~  266 (588)
                      +.-+.|++.+.||+|+||+||+|.+.      ++.||||++....   ..             ...+.+.+|+.+++.+ 
T Consensus        28 ~~~r~~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~---~~-------------~~~~~~~~E~~~l~~l-   90 (318)
T 3lxp_A           28 FHKRYLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADA---GP-------------QHRSGWKQEIDILRTL-   90 (318)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTC---CH-------------HHHHHHHHHHHHHHHC-
T ss_pred             ecHHHHhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEecccc---Ch-------------HHHHHHHHHHHHHHhC-
Confidence            44344599999999999999998763      7899999995321   10             1233466799999998 


Q ss_pred             CCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHH
Q psy4039         267 NLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLL  345 (588)
Q Consensus       267 ~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i  345 (588)
                         +||||+++++++.+..                          ...+++||||+ +|+|.+++...  .+++.+++.+
T Consensus        91 ---~h~~iv~~~~~~~~~~--------------------------~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~i  139 (318)
T 3lxp_A           91 ---YHEHIIKYKGCCEDAG--------------------------AASLQLVMEYVPLGSLRDYLPRH--SIGLAQLLLF  139 (318)
T ss_dssp             ---CCTTBCCEEEEEEETT--------------------------TTEEEEEECCCTTCBHHHHGGGS--CCCHHHHHHH
T ss_pred             ---CCcchhhEEEEEecCC--------------------------CceEEEEEecccCCcHHHHHhhC--CCCHHHHHHH
Confidence               8999999999998631                          12589999999 57999999765  6999999999


Q ss_pred             HHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcC
Q psy4039         346 FTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALAT  425 (588)
Q Consensus       346 ~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~  425 (588)
                      +.||+.||.|||++||+||||||+|||++.+     +.+||+|||+++.........  .......||+.|+|||++.+.
T Consensus       140 ~~~l~~~l~~LH~~~ivH~Dikp~Nil~~~~-----~~~kl~Dfg~a~~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~  212 (318)
T 3lxp_A          140 AQQICEGMAYLHAQHYIHRDLAARNVLLDND-----RLVKIGDFGLAKAVPEGHEYY--RVREDGDSPVFWYAPECLKEY  212 (318)
T ss_dssp             HHHHHHHHHHHHHTTEECSCCSGGGEEECTT-----CCEEECCGGGCEECCTTCSEE--EC---CCCCGGGCCHHHHHHC
T ss_pred             HHHHHHHHHHHHhCCccCCCCchheEEEcCC-----CCEEECCcccccccccccccc--ccccCCCCCceeeChHHhcCC
Confidence            9999999999999999999999999999987     799999999998865532211  112245688999999999876


Q ss_pred             CCCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccc------------------ccccccccCCCCCCccHHHHHHHHH
Q psy4039         426 PGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARN------------------TDYEVNALPQLNTNVPEVMRRLVAK  487 (588)
Q Consensus       426 ~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~------------------~~~~~~~~~~~~~~~~~~l~~Li~~  487 (588)
                      .      ++.++|||||||++|||++|..||......                  ...........+..+|+++.+||.+
T Consensus       213 ~------~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  286 (318)
T 3lxp_A          213 K------FYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLRLTELLERGERLPRPDKCPAEVYHLMKN  286 (318)
T ss_dssp             E------EEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCCCCCTTCCHHHHHHHHH
T ss_pred             C------CCcHHHHHHHHHHHHHHHhCCCcccccchhhhhhhcccccchhHHHHHHHHhcccCCCCCccccHHHHHHHHH
Confidence            5      346799999999999999999999753110                  0111223445667899999999999


Q ss_pred             hhhhCCCCCCCHHHHHHHHhhh
Q psy4039         488 LLENDPSDRPSAELAATVCQLY  509 (588)
Q Consensus       488 ~L~~dP~~Rps~~e~l~~L~~~  509 (588)
                      ||+.||.+|||++++++.|+..
T Consensus       287 ~l~~dP~~Rps~~ell~~L~~l  308 (318)
T 3lxp_A          287 CWETEASFRPTFENLIPILKTV  308 (318)
T ss_dssp             HTCSSGGGSCCHHHHHHHHHHH
T ss_pred             HcCCCcccCcCHHHHHHHHHHH
Confidence            9999999999999999988754

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=100.00  E-value=3e-41  Score=341.61  Aligned_cols=258  Identities=21%  Similarity=0.282  Sum_probs=203.4

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||.||+|.+.  ++.||||++...                     ...+.+|+.+++.+    +|||
T Consensus        11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---------------------~~~~~~e~~~l~~l----~h~~   65 (284)
T 2a19_B           11 MDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYN---------------------NEKAEREVKALAKL----DHVN   65 (284)
T ss_dssp             HHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECC---------------------SGGGHHHHHHHHHC----CCTT
T ss_pred             cccceeeeeccCCceEEEEEEEcCCCeEEEEEEeccc---------------------cHHHHHHHHHHHhC----CCCC
Confidence            67999999999999999999997  899999998531                     23456799999987    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCC-CcHHHHHHHh-cCCCCHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYN-TDLRNYLRER-CAQLSMHERVLLFTQLLE  351 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~-gsL~~~L~~~-~~~l~~~~~~~i~~ql~~  351 (588)
                      |+++++++.+.......            ............+++||||+. ++|.+++... ...+++..++.++.||+.
T Consensus        66 i~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~  133 (284)
T 2a19_B           66 IVHYNGCWDGFDYDPET------------SSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITK  133 (284)
T ss_dssp             BCCEEEEEEEEEEC---------------------CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHH
T ss_pred             EEEEeeeEeccccCccc------------ccccccccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHH
Confidence            99999998752100000            000001122346899999995 6999999865 347999999999999999


Q ss_pred             HHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccC
Q psy4039         352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF  431 (588)
Q Consensus       352 gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~  431 (588)
                      ||.|||++||+||||||+|||++.+     +.+||+|||+++.......      .....||+.|+|||++.+..     
T Consensus       134 ~l~~lH~~~i~H~dlkp~Nil~~~~-----~~~kl~Dfg~~~~~~~~~~------~~~~~~~~~y~aPE~~~~~~-----  197 (284)
T 2a19_B          134 GVDYIHSKKLINRDLKPSNIFLVDT-----KQVKIGDFGLVTSLKNDGK------RTRSKGTLRYMSPEQISSQD-----  197 (284)
T ss_dssp             HHHHHHHTTEECSCCSGGGEEEEET-----TEEEECCCTTCEESSCCSC------CCCCCSCCTTSCHHHHHCSC-----
T ss_pred             HHHHHHhCCeeeccCCHHHEEEcCC-----CCEEECcchhheecccccc------ccccCCcccccChhhhccCC-----
Confidence            9999999999999999999999987     7999999999987654321      11356999999999998664     


Q ss_pred             CCCCcCchhhHHHHHHHHhcCCCCCccccccccccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhh
Q psy4039         432 VNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLY  509 (588)
Q Consensus       432 ~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~  509 (588)
                       ++.++|||||||++|||++|..||......  ........++..++++++++|.+||+.||.+|||++++++.|+.+
T Consensus       198 -~~~~~Di~slG~il~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~~l~~~  272 (284)
T 2a19_B          198 -YGKEVDLYALGLILAELLHVCDTAFETSKF--FTDLRDGIISDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVW  272 (284)
T ss_dssp             -CCTHHHHHHHHHHHHHHHSCCSSHHHHHHH--HHHHHTTCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             -CcchhhhHHHHHHHHHHHhcCCcchhHHHH--HHHhhcccccccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence             457899999999999999999998653211  111112234567899999999999999999999999999966644

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=100.00  E-value=1.7e-41  Score=349.46  Aligned_cols=266  Identities=20%  Similarity=0.228  Sum_probs=199.0

Q ss_pred             CccccccCCeEEeeeecccCceeEEEEEEC-----CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHh
Q psy4039         189 DVDDVKVDDIQIGKFIAKGTNAVVYEATFR-----GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMN  263 (588)
Q Consensus       189 ~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-----g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~  263 (588)
                      ....+..++|.+++.||+|+||.||+|.+.     +..||||++......   ..            ..+.+.+|+.+++
T Consensus        27 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~---~~------------~~~~~~~e~~~l~   91 (313)
T 3brb_A           27 EDVVIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSS---QR------------EIEEFLSEAACMK   91 (313)
T ss_dssp             TTTBCCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCC---HH------------HHHHHHHHHHHHH
T ss_pred             HhcccCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccc---hh------------HHHHHHHHHHHHh
Confidence            444566689999999999999999999875     348999998532211   00            1234567899998


Q ss_pred             hhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh-----cCCC
Q psy4039         264 SVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER-----CAQL  337 (588)
Q Consensus       264 ~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~-----~~~l  337 (588)
                      .+    +||||+++++++.+...                       ......++||||+ +|+|.+++...     ...+
T Consensus        92 ~l----~h~~iv~~~~~~~~~~~-----------------------~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~  144 (313)
T 3brb_A           92 DF----SHPNVIRLLGVCIEMSS-----------------------QGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHI  144 (313)
T ss_dssp             TC----CCTTBCCCCEEEEC------------------------------CEEEEEECCTTCBHHHHHHHTTBTTSCCCC
T ss_pred             cC----CCCCeeeeeEEEeeccc-----------------------cCCcccEEEEecccCCCHHHHHHHhhhhcCCccC
Confidence            87    89999999999986421                       1112479999999 57999999642     2469


Q ss_pred             CHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCcccc
Q psy4039         338 SMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALM  417 (588)
Q Consensus       338 ~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~  417 (588)
                      ++..++.++.||++||.|||++||+||||||+|||++.+     +.+||+|||+++........   .......||+.|+
T Consensus       145 ~~~~~~~i~~qi~~aL~~LH~~~ivH~dikp~NIli~~~-----~~~kl~Dfg~~~~~~~~~~~---~~~~~~~~~~~y~  216 (313)
T 3brb_A          145 PLQTLLKFMVDIALGMEYLSNRNFLHRDLAARNCMLRDD-----MTVCVADFGLSKKIYSGDYY---RQGRIAKMPVKWI  216 (313)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTTCCCCCCSGGGEEECTT-----SCEEECSCSCC-------------------CCGGGS
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCC-----CcEEEeecCcceeccccccc---CcccccCCCcccc
Confidence            999999999999999999999999999999999999987     79999999999876443211   1112356788999


Q ss_pred             chhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCccccccccc---cccccCCCCCCccHHHHHHHHHhhhhCC
Q psy4039         418 APEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTDY---EVNALPQLNTNVPEVMRRLVAKLLENDP  493 (588)
Q Consensus       418 APE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~~---~~~~~~~~~~~~~~~l~~Li~~~L~~dP  493 (588)
                      |||++.+..      ++.++|||||||++|||++ |..||.........   .....+..+..+++++.+++.+||+.||
T Consensus       217 aPE~~~~~~------~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp  290 (313)
T 3brb_A          217 AIESLADRV------YTSKSDVWAFGVTMWEIATRGMTPYPGVQNHEMYDYLLHGHRLKQPEDCLDELYEIMYSCWRTDP  290 (313)
T ss_dssp             CHHHHHSSC------CCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTCCCCCBTTCCHHHHHHHHHTTCSSG
T ss_pred             CchhhcCCC------ccchhhhHHHHHHHHHHHhcCCCCCccCCHHHHHHHHHcCCCCCCCccccHHHHHHHHHHcCCCh
Confidence            999997654      4568999999999999999 88999764332211   1223345667899999999999999999


Q ss_pred             CCCCCHHHHHHHHhhhh
Q psy4039         494 SDRPSAELAATVCQLYL  510 (588)
Q Consensus       494 ~~Rps~~e~l~~L~~~~  510 (588)
                      .+|||++++++.|+..+
T Consensus       291 ~~Rps~~~l~~~L~~l~  307 (313)
T 3brb_A          291 LDRPTFSVLRLQLEKLL  307 (313)
T ss_dssp             GGSCCHHHHHHHHHHHH
T ss_pred             hhCcCHHHHHHHHHHHH
Confidence            99999999999887654

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=100.00  E-value=1.4e-41  Score=383.00  Aligned_cols=258  Identities=19%  Similarity=0.219  Sum_probs=204.0

Q ss_pred             cccccCCeEEee-eecccCceeEEEEEEC----CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhh
Q psy4039         191 DDVKVDDIQIGK-FIAKGTNAVVYEATFR----GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSV  265 (588)
Q Consensus       191 ~~i~~~~~~~~~-~IG~G~fG~Vy~a~~~----g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l  265 (588)
                      +.+..+++.+.+ .||+|+||.||+|.+.    +..||||+++.....                ...+.+.+|+.+|+.+
T Consensus       330 ~~~~~~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~----------------~~~~~~~~E~~il~~l  393 (613)
T 2ozo_A          330 LFLKRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEK----------------ADTEEMMREAQIMHQL  393 (613)
T ss_dssp             SBCCTTSEEEEEEEEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSS----------------TTHHHHHHHHHHHTTC
T ss_pred             eeccccceeEcCcEEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCCh----------------HHHHHHHHHHHHHHhC
Confidence            445556777776 8999999999999884    567999998542211                1234567799999887


Q ss_pred             cCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHH
Q psy4039         266 ENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVL  344 (588)
Q Consensus       266 ~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~  344 (588)
                          +|||||+++++|.+.                             .+++||||+ +|+|.+++......+++..+..
T Consensus       394 ----~hpniv~l~~~~~~~-----------------------------~~~lv~E~~~~g~L~~~l~~~~~~l~~~~~~~  440 (613)
T 2ozo_A          394 ----DNPYIVRLIGVCQAE-----------------------------ALMLVMEMAGGGPLHKFLVGKREEIPVSNVAE  440 (613)
T ss_dssp             ----CCTTBCCEEEEEESS-----------------------------SEEEEEECCTTCBHHHHHTTCTTTSCHHHHHH
T ss_pred             ----CCCCEeeEEEEeccC-----------------------------CeEEEEEeCCCCcHHHHHhhccCCCCHHHHHH
Confidence                999999999998752                             289999999 6899999987665799999999


Q ss_pred             HHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhc
Q psy4039         345 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALA  424 (588)
Q Consensus       345 i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~  424 (588)
                      ++.||+.||.|||+++|+||||||+|||++.+     +.+||+|||+|+........  ........+|+.|+|||++.+
T Consensus       441 i~~qi~~~L~~LH~~~iiHrDlkp~NILl~~~-----~~vkL~DFGla~~~~~~~~~--~~~~~~~~~~~~y~APE~~~~  513 (613)
T 2ozo_A          441 LLHQVSMGMKYLEEKNFVHRNLAARNVLLVNR-----HYAKISDFGLSKALGADDSY--YTARSAGKWPLKWYAPECINF  513 (613)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCSGGGEEEEET-----TEEEECCCSTTTTCC----------------CCTTSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCEEcCcCCHHHEEEcCC-----CcEEEeeccCcccccCCCce--eeeccCCCCccceeCHhhhcC
Confidence            99999999999999999999999999999988     89999999999876442211  111113346789999999987


Q ss_pred             CCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHH
Q psy4039         425 TPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE  500 (588)
Q Consensus       425 ~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~  500 (588)
                      ..      ++.++|||||||++|||++ |+.||.+......   +........+..+|+++.+||.+||+.||++||+++
T Consensus       514 ~~------~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~  587 (613)
T 2ozo_A          514 RK------FSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKRMECPPECPPELYALMSDCWIYKWEDRPDFL  587 (613)
T ss_dssp             CC------CCHHHHHHHHHHHHHHHHTTSCCTTTTCCSHHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSTTTSCCHH
T ss_pred             CC------CCcHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHcCCChhHCcCHH
Confidence            65      4578999999999999998 9999977432221   122334556778999999999999999999999999


Q ss_pred             HHHHHHhhhh
Q psy4039         501 LAATVCQLYL  510 (588)
Q Consensus       501 e~l~~L~~~~  510 (588)
                      ++++.|+.++
T Consensus       588 ~l~~~L~~~~  597 (613)
T 2ozo_A          588 TVEQRMRACY  597 (613)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999888543

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=100.00  E-value=1.8e-41  Score=345.13  Aligned_cols=252  Identities=27%  Similarity=0.394  Sum_probs=202.7

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||.||+|.+.  ++.||||++.......               .....+.+|+.+++.+    +|||
T Consensus        22 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~---------------~~~~~~~~e~~~l~~l----~h~~   82 (287)
T 2wei_A           22 ERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKN---------------KDTSTILREVELLKKL----DHPN   82 (287)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSS---------------SCHHHHHHHHHHHHTC----CCTT
T ss_pred             hcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccch---------------HHHHHHHHHHHHHHhc----cCCC
Confidence            78999999999999999999996  8899999985422211               1234566799999887    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++++.+..                            ..++|||++ +++|.+++.... .+++.+++.++.||+.|
T Consensus        83 i~~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~  133 (287)
T 2wei_A           83 IMKLFEILEDSS----------------------------SFYIVGELYTGGELFDEIIKRK-RFSEHDAARIIKQVFSG  133 (287)
T ss_dssp             BCCEEEEEECSS----------------------------EEEEEECCCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHH
T ss_pred             ccEEEEEEeCCC----------------------------eEEEEEEccCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHH
Confidence            999999987632                            489999999 679999988765 79999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||++||+||||||+||+++.+..  ...+||+|||++.........      ....||+.|+|||++.+.       
T Consensus       134 l~~LH~~~i~H~dl~p~NIlv~~~~~--~~~~kL~Dfg~~~~~~~~~~~------~~~~~~~~y~aPE~~~~~-------  198 (287)
T 2wei_A          134 ITYMHKHNIVHRDLKPENILLESKEK--DCDIKIIDFGLSTCFQQNTKM------KDRIGTAYYIAPEVLRGT-------  198 (287)
T ss_dssp             HHHHHHTTCCCSCCCGGGEEESCSST--TCCEEECSTTGGGTBCCCSSC------SCHHHHHTTCCHHHHTTC-------
T ss_pred             HHHHHHCCeeccCCChhhEEEecCCC--cccEEEeccCcceeecCCCcc------ccccCcccccChHHhcCC-------
Confidence            99999999999999999999986521  157999999999875442211      134589999999998653       


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCccccccccccc---cc---cCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHH
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV---NA---LPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVC  506 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~---~~---~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L  506 (588)
                      ++.++||||||+++|+|++|..||.+.........   ..   ..+.+..+|+++.++|.+||+.||++|||++++++  
T Consensus       199 ~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~--  276 (287)
T 2wei_A          199 YDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFDLPQWRTISDDAKDLIRKMLTFHPSLRITATQCLE--  276 (287)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCSGGGTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH--
T ss_pred             CCCchhhHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCchhhhhcCHHHHHHHHHHcccChhhCcCHHHHhc--
Confidence            45789999999999999999999976432211110   00   11122568899999999999999999999999999  


Q ss_pred             hhhhhcCCccccC
Q psy4039         507 QLYLWAPKHWLYG  519 (588)
Q Consensus       507 ~~~~~~~h~w~~~  519 (588)
                             |||++.
T Consensus       277 -------hp~~~~  282 (287)
T 2wei_A          277 -------HPWIQK  282 (287)
T ss_dssp             -------SHHHHH
T ss_pred             -------CHHHhc
Confidence                   999863

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=100.00  E-value=2.3e-41  Score=348.77  Aligned_cols=258  Identities=20%  Similarity=0.251  Sum_probs=195.0

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCC
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENL  268 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l  268 (588)
                      ....+++|++.+.||+|+||.||+|.+.  ++.||||++.......              ....+.+.+|+.+++.+   
T Consensus        29 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~--------------~~~~~~~~~e~~~l~~l---   91 (309)
T 2h34_A           29 EGTQFGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSD--------------PVFRTRMQREARTAGRL---   91 (309)
T ss_dssp             -----CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGS--------------HHHHHHHHHHHHHHTTC---
T ss_pred             CCcEeccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccC--------------HHHHHHHHHHHHHHhhc---
Confidence            3445699999999999999999999986  8899999985321110              01124466788999887   


Q ss_pred             CCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCC-CcHHHHHHHhcCCCCHHHHHHHHH
Q psy4039         269 PPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYN-TDLRNYLRERCAQLSMHERVLLFT  347 (588)
Q Consensus       269 ~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~-gsL~~~L~~~~~~l~~~~~~~i~~  347 (588)
                       +||||+++++++.+..                            ..++||||+. ++|.+++.... .+++.+++.++.
T Consensus        92 -~hp~iv~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~  141 (309)
T 2h34_A           92 -QEPHVVPIHDFGEIDG----------------------------QLYVDMRLINGVDLAAMLRRQG-PLAPPRAVAIVR  141 (309)
T ss_dssp             -CCTTBCCEEEEEEETT----------------------------EEEEEEECCCCEEHHHHHHHHC-SCCHHHHHHHHH
T ss_pred             -CCCCeeEEEEEEeeCC----------------------------eEEEEEEecCCCCHHHHHHhcC-CCCHHHHHHHHH
Confidence             9999999999988632                            4899999995 69999998764 799999999999


Q ss_pred             HHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCC
Q psy4039         348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG  427 (588)
Q Consensus       348 ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~  427 (588)
                      |++.||.|||++||+||||||+|||++.+     +.+||+|||++.........    ......||+.|+|||++.+.. 
T Consensus       142 qi~~~l~~lH~~~i~H~dlkp~NIl~~~~-----~~~kl~Dfg~~~~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~-  211 (309)
T 2h34_A          142 QIGSALDAAHAAGATHRDVKPENILVSAD-----DFAYLVDFGIASATTDEKLT----QLGNTVGTLYYMAPERFSESH-  211 (309)
T ss_dssp             HHHHHHHHHHHTTCCCSCCCGGGEEECTT-----SCEEECSCCC--------------------CCGGGCCGGGTCC---
T ss_pred             HHHHHHHHHHHCcCCcCCCChHHEEEcCC-----CCEEEecCccCccccccccc----cccccCCCcCccCHHHHcCCC-
Confidence            99999999999999999999999999987     79999999999775442211    112456999999999987654 


Q ss_pred             CccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccc---c--ccccCCCCCCccHHHHHHHHHhhhhCCCCCC-CHHH
Q psy4039         428 LFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY---E--VNALPQLNTNVPEVMRRLVAKLLENDPSDRP-SAEL  501 (588)
Q Consensus       428 ~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~---~--~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rp-s~~e  501 (588)
                           ++.++||||||+++|||++|+.||.........   .  .......+..+|+++.++|.+||+.||++|| ++++
T Consensus       212 -----~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rp~s~~~  286 (309)
T 2h34_A          212 -----ATYRADIYALTCVLYECLTGSPPYQGDQLSVMGAHINQAIPRPSTVRPGIPVAFDAVIARGMAKNPEDRYVTCGD  286 (309)
T ss_dssp             -------CCCHHHHHHHHHHHHHHSSCSSCSCHHHHHHHHHHSCCCCGGGTSTTCCTHHHHHHHHHTCSSGGGSCSSHHH
T ss_pred             -----CCchHhHHHHHHHHHHHHHCCCCCCCchHHHHHHHhccCCCCccccCCCCCHHHHHHHHHhccCCHHHHHHhHHH
Confidence                 457899999999999999999999764321110   0  0111234567899999999999999999999 9999


Q ss_pred             HHHHHhhhh
Q psy4039         502 AATVCQLYL  510 (588)
Q Consensus       502 ~l~~L~~~~  510 (588)
                      +++.|+..+
T Consensus       287 l~~~l~~~l  295 (309)
T 2h34_A          287 LSAAAHAAL  295 (309)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHHHH
Confidence            998777543

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=100.00  E-value=2.8e-41  Score=344.39  Aligned_cols=266  Identities=25%  Similarity=0.329  Sum_probs=197.0

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||.||+|.+.  ++.||||++....                  ...+.+.+|+.+++.+    +|||
T Consensus         6 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~------------------~~~~~~~~E~~~l~~l----~h~~   63 (303)
T 1zy4_A            6 SDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTE------------------EKLSTILSEVMLLASL----NHQY   63 (303)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEEH------------------HHHHHHHHHHHHHTTC----CCTT
T ss_pred             ccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEeccH------------------HHHHHHHHHHHHHHhc----CchH
Confidence            68999999999999999999986  8899999984310                  0123456799999887    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |+++++++.+.....               .+.+........++||||+ +|+|.+++......+++..++.++.|++.|
T Consensus        64 i~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~  128 (303)
T 1zy4_A           64 VVRYYAAWLERRNFV---------------KPMTAVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWRLFRQILEA  128 (303)
T ss_dssp             BCCEEEEEEECCCCC---------------C------CEEEEEEEEECCCSCBHHHHHHHSCGGGCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcchh---------------hhhcccccCCceEEEEecCCCCCHHHhhhccccccchHHHHHHHHHHHHH
Confidence            999999987642100               0000112244699999999 579999998766578999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCcc---------ccccccccccCCccccchhHHh
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSM---------QYSSADIELGGNVALMAPEVAL  423 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~---------~~~~~~~~~~GT~~Y~APE~l~  423 (588)
                      |.|||++||+||||||+|||++.+     +.+||+|||+++........         ..........||+.|+|||++.
T Consensus       129 l~~LH~~~i~H~dlkp~Nil~~~~-----~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  203 (303)
T 1zy4_A          129 LSYIHSQGIIHRDLKPMNIFIDES-----RNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLD  203 (303)
T ss_dssp             HHHHHHTTCCCSCCCGGGEEECTT-----SCEEECCCCCCSCTTC-------------------------CTTSCHHHHT
T ss_pred             HHHHHhCCeecccCCHHhEEEcCC-----CCEEEeeCcchhhcccccchhccccccccccccccccCCCcccccCccccc
Confidence            999999999999999999999887     78999999999875432110         0011122457999999999997


Q ss_pred             cCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccc-------cccccccCCCCCCccHHHHHHHHHhhhhCCCCC
Q psy4039         424 ATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNT-------DYEVNALPQLNTNVPEVMRRLVAKLLENDPSDR  496 (588)
Q Consensus       424 ~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~-------~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~R  496 (588)
                      +...     ++.++|||||||++|||++   ||.......       .......+.++..+++.+++++.+||+.||.+|
T Consensus       204 ~~~~-----~~~~~Di~slG~il~~l~~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R  275 (303)
T 1zy4_A          204 GTGH-----YNEKIDMYSLGIIFFEMIY---PFSTGMERVNILKKLRSVSIEFPPDFDDNKMKVEKKIIRLLIDHDPNKR  275 (303)
T ss_dssp             SCSC-----CCTHHHHHHHHHHHHHHHS---CCSSHHHHHHHHHHHHSTTCCCCTTCCTTTSHHHHHHHHHHTCSSGGGS
T ss_pred             CCCC-----CcchhhHHHHHHHHHHHHh---ccCCchhHHHHHHhccccccccCccccccchHHHHHHHHHHHhcCcccC
Confidence            5421     4578999999999999998   554321100       011112234556778899999999999999999


Q ss_pred             CCHHHHHHHHhhhhhcCCccccCC
Q psy4039         497 PSAELAATVCQLYLWAPKHWLYGA  520 (588)
Q Consensus       497 ps~~e~l~~L~~~~~~~h~w~~~~  520 (588)
                      ||++++++         |||++..
T Consensus       276 ps~~~ll~---------h~~~~~~  290 (303)
T 1zy4_A          276 PGARTLLN---------SGWLPVK  290 (303)
T ss_dssp             CCHHHHHH---------SSCSCCC
T ss_pred             cCHHHHhC---------CCCcCCC
Confidence            99999999         9999743

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=100.00  E-value=2.4e-41  Score=345.70  Aligned_cols=256  Identities=19%  Similarity=0.224  Sum_probs=200.0

Q ss_pred             CCeEEeeeecccCceeEEEEEEC-----CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCC
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR-----GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPP  270 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~-----g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~  270 (588)
                      ..|++.+.||+|+||.||+|.+.     ...||||.+....   +.             ...+.+.+|+.+++.+    +
T Consensus        25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~---~~-------------~~~~~~~~E~~~l~~l----~   84 (298)
T 3f66_A           25 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRIT---DI-------------GEVSQFLTEGIIMKDF----S   84 (298)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCC---SH-------------HHHHHHHHHHHHHHTC----C
T ss_pred             eehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCC---CH-------------HHHHHHHHHHHHHHhC----C
Confidence            56999999999999999999975     3368999984311   11             0123456789999887    8


Q ss_pred             CCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4039         271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQL  349 (588)
Q Consensus       271 HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql  349 (588)
                      ||||+++++++.+..                           ...++||||+ +|+|.+++......+++..++.++.|+
T Consensus        85 h~~iv~~~~~~~~~~---------------------------~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~ql  137 (298)
T 3f66_A           85 HPNVLSLLGICLRSE---------------------------GSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQV  137 (298)
T ss_dssp             CTTBCCCCEEECCSS---------------------------SCCEEEEECCTTCBHHHHHHCTTCCCCHHHHHHHHHHH
T ss_pred             CCCEeeeeeEEEcCC---------------------------CceEEEEeCCCCCCHHHHHHhcccCCCHHHHHHHHHHH
Confidence            999999999865421                           1378999999 569999998766679999999999999


Q ss_pred             HHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCc
Q psy4039         350 LEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF  429 (588)
Q Consensus       350 ~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~  429 (588)
                      +.||.|||++||+||||||+|||++.+     +.+||+|||+++......... ........||+.|+|||++.+..   
T Consensus       138 ~~~l~~lH~~~i~H~dikp~Nil~~~~-----~~~kl~Dfg~a~~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~---  208 (298)
T 3f66_A          138 AKGMKYLASKKFVHRDLAARNCMLDEK-----FTVKVADFGLARDMYDKEYYS-VHNKTGAKLPVKWMALESLQTQK---  208 (298)
T ss_dssp             HHHHHHHHHTTCCCSCCSGGGEEECTT-----CCEEECSCGGGCCCSCGGGCB-C-----CCBCGGGSCHHHHHHCC---
T ss_pred             HHHHHHHHhCCccCCCCchheEEECCC-----CCEEECcccccccccccchhc-cccccCCCCCccccChHHhcCCC---
Confidence            999999999999999999999999887     899999999998765422111 11122456889999999998765   


Q ss_pred             cCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHH
Q psy4039         430 SFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATV  505 (588)
Q Consensus       430 ~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~  505 (588)
                         ++.++|||||||++|||++ |.+||........   .........+..+|+++.+++.+||+.||.+|||++++++.
T Consensus       209 ---~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~  285 (298)
T 3f66_A          209 ---FTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSR  285 (298)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHTTSCCSSTTSCTTTHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ---CChHHHHHHHHHHHHHHHhCCCCCCccCCHHHHHHHHhcCCCCCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence               4568999999999999999 5556654322111   11223334467789999999999999999999999999998


Q ss_pred             Hhhhh
Q psy4039         506 CQLYL  510 (588)
Q Consensus       506 L~~~~  510 (588)
                      |+..+
T Consensus       286 L~~~~  290 (298)
T 3f66_A          286 ISAIF  290 (298)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88654

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=100.00  E-value=2.2e-41  Score=351.35  Aligned_cols=264  Identities=21%  Similarity=0.243  Sum_probs=207.8

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEEC--Ce--eEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhc
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATFR--GV--EYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVE  266 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~--~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~  266 (588)
                      ..+..++|++.+.||+|+||.||+|.+.  +.  .||||.+......                ...+.+.+|+.+++.+ 
T Consensus        20 p~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~----------------~~~~~~~~E~~~l~~l-   82 (327)
T 1fvr_A           20 PVLDWNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASK----------------DDHRDFAGELEVLCKL-   82 (327)
T ss_dssp             SBCCGGGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC----------------------CHHHHHHHHHTTC-
T ss_pred             ccccHHHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccch----------------HHHHHHHHHHHHHHhc-
Confidence            3466799999999999999999999986  55  4599998532111                1234567799998876 


Q ss_pred             CCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc-----------
Q psy4039         267 NLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC-----------  334 (588)
Q Consensus       267 ~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~-----------  334 (588)
                        .+||||+++++++.+..                            .+++||||+ +|+|.+++....           
T Consensus        83 --~~hp~iv~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~  132 (327)
T 1fvr_A           83 --GHHPNIINLLGACEHRG----------------------------YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIA  132 (327)
T ss_dssp             --CCCTTBCCEEEEEEETT----------------------------EEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHH
T ss_pred             --cCCCchhhhceeeeeCC----------------------------ceEEEEecCCCCCHHHHHHhccccccccccccc
Confidence              58999999999997632                            499999999 679999998642           


Q ss_pred             ----CCCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccc
Q psy4039         335 ----AQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIEL  410 (588)
Q Consensus       335 ----~~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~  410 (588)
                          ..+++.+++.++.||+.||.|||++||+||||||+|||++.+     +.+||+|||+++......      .....
T Consensus       133 ~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~~~-----~~~kL~Dfg~~~~~~~~~------~~~~~  201 (327)
T 1fvr_A          133 NSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGEN-----YVAKIADFGLSRGQEVYV------KKTMG  201 (327)
T ss_dssp             TTBSCSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECGG-----GCEEECCTTCEESSCEEC------CC---
T ss_pred             ccccccCCHHHHHHHHHHHHHHHHHHHhCCccCCCCccceEEEcCC-----CeEEEcccCcCccccccc------cccCC
Confidence                369999999999999999999999999999999999999987     799999999997533211      11134


Q ss_pred             cCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHHH
Q psy4039         411 GGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVA  486 (588)
Q Consensus       411 ~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~  486 (588)
                      .+|+.|+|||++.+..      ++.++|||||||++|||++ |..||.+......   ......+..+..+++++.+||.
T Consensus       202 ~~~~~y~aPE~~~~~~------~~~~~Di~slG~il~ellt~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  275 (327)
T 1fvr_A          202 RLPVRWMAIESLNYSV------YTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRLEKPLNCDDEVYDLMR  275 (327)
T ss_dssp             -CCTTTCCHHHHHHCE------ECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHGGGTCCCCCCTTBCHHHHHHHH
T ss_pred             CCCccccChhhhcccc------CCchhcchHHHHHHHHHHcCCCCCCCCCcHHHHHHHhhcCCCCCCCCCCCHHHHHHHH
Confidence            5788999999997664      4468999999999999998 9999976432211   1122234456788999999999


Q ss_pred             HhhhhCCCCCCCHHHHHHHHhhhhhcCCcccc
Q psy4039         487 KLLENDPSDRPSAELAATVCQLYLWAPKHWLY  518 (588)
Q Consensus       487 ~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~  518 (588)
                      +||+.||.+|||++++++.|+..+-....+..
T Consensus       276 ~~l~~dp~~Rps~~ell~~L~~~~~~~~~~~~  307 (327)
T 1fvr_A          276 QCWREKPYERPSFAQILVSLNRMLEERKTYVN  307 (327)
T ss_dssp             HHTCSSGGGSCCHHHHHHHHHHHHHSSSCSBC
T ss_pred             HHccCChhhCcCHHHHHHHHHHHHHhhcCccc
Confidence            99999999999999999998877765555443

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.9e-41  Score=354.37  Aligned_cols=267  Identities=15%  Similarity=0.203  Sum_probs=200.1

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC----------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhh
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR----------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNS  264 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~----------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~  264 (588)
                      -++|++.+.||+|+||.||+|.+.          ++.||||++..                      ...+.+|+.+++.
T Consensus        41 ~~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~----------------------~~~~~~E~~~l~~   98 (352)
T 2jii_A           41 GRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAK----------------------DGRLFNEQNFFQR   98 (352)
T ss_dssp             SCEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEET----------------------TSTHHHHHHHHHH
T ss_pred             CCeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEecc----------------------cchHHHHHHHHHH
Confidence            378999999999999999999985          57999999842                      1346679999999


Q ss_pred             hcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHh-cCCCCHHHHH
Q psy4039         265 VENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRER-CAQLSMHERV  343 (588)
Q Consensus       265 l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~-~~~l~~~~~~  343 (588)
                      +    +|||||++++.+......          ..+..++.  +.......++||||++++|.+++... ...+++.+++
T Consensus        99 l----~h~niv~~~~~~~~~~~~----------~i~~~~~~--~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~  162 (352)
T 2jii_A           99 A----AKPLQVNKWKKLYSTPLL----------AIPTCMGF--GVHQDKYRFLVLPSLGRSLQSALDVSPKHVLSERSVL  162 (352)
T ss_dssp             H----CCHHHHHHHHHHTTCTTC----------SCCCCCEE--EEETTTEEEEEEECCCEEHHHHHHHSGGGCCCHHHHH
T ss_pred             h----cccchhhhhhhhccCCcc----------Cccchhhc--cccCCcEEEEEecCCCcCHHHHHHhCCcCCCCHHHHH
Confidence            8    899999865543321100          00000000  00113469999999988999999875 3489999999


Q ss_pred             HHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCC--ceeeeccccccccCCCCcc-c-cccccccccCCccccch
Q psy4039         344 LLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCP--QLVITDFGSSYTNKSGLSM-Q-YSSADIELGGNVALMAP  419 (588)
Q Consensus       344 ~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~--~vkL~DFGla~~~~~~~~~-~-~~~~~~~~~GT~~Y~AP  419 (588)
                      .++.||+.||.|||++||+||||||+|||++.+     +  .+||+|||+++........ . .........||+.|+||
T Consensus       163 ~i~~qi~~~L~~LH~~~ivH~Dikp~NIl~~~~-----~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aP  237 (352)
T 2jii_A          163 QVACRLLDALEFLHENEYVHGNVTAENIFVDPE-----DQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISM  237 (352)
T ss_dssp             HHHHHHHHHHHHHHHTTCBCSCCCGGGEEEETT-----EEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCH
T ss_pred             HHHHHHHHHHHHHHhCCccCCCCCHHHEEEcCC-----CCceEEEecCcceeeccCCCccccccccccccccCCccccCH
Confidence            999999999999999999999999999999977     5  8999999999876542211 0 11111245799999999


Q ss_pred             hHHhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccc-ccc------ccccCCC------CCCccHHHHHHHH
Q psy4039         420 EVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNT-DYE------VNALPQL------NTNVPEVMRRLVA  486 (588)
Q Consensus       420 E~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~-~~~------~~~~~~~------~~~~~~~l~~Li~  486 (588)
                      |++.+..      ++.++|||||||++|||++|+.||....... ...      ....+.+      +..+|+++.+++.
T Consensus       238 E~~~~~~------~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  311 (352)
T 2jii_A          238 DLHKGCG------PSRRSDLQSLGYCMLKWLYGFLPWTNCLPNTEDIMKQKQKFVDKPGPFVGPCGHWIRPSETLQKYLK  311 (352)
T ss_dssp             HHHTTCC------CCHHHHHHHHHHHHHHHHHSCCTTGGGTTCHHHHHHHHHHHHHSCCCEECTTSCEECCCHHHHHHHH
T ss_pred             HHHccCC------CCchhhHHHHHHHHHHHHhCCCCcccCCcCHHHHHHHHHhccCChhhhhhhccccCCCcHHHHHHHH
Confidence            9997754      4568999999999999999999998642111 000      0011111      1356899999999


Q ss_pred             HhhhhCCCCCCCHHHHHHHHhhhh
Q psy4039         487 KLLENDPSDRPSAELAATVCQLYL  510 (588)
Q Consensus       487 ~~L~~dP~~Rps~~e~l~~L~~~~  510 (588)
                      +||+.||.+|||++++++.|+..+
T Consensus       312 ~~l~~dp~~Rps~~~l~~~L~~~~  335 (352)
T 2jii_A          312 VVMALTYEEKPPYAMLRNNLEALL  335 (352)
T ss_dssp             HHHTCCTTCCCCHHHHHHHHHHHH
T ss_pred             HHHhCChhhCCCHHHHHHHHHHHH
Confidence            999999999999999999888665

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=100.00  E-value=1.8e-41  Score=351.70  Aligned_cols=261  Identities=21%  Similarity=0.229  Sum_probs=185.0

Q ss_pred             CCccccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHH-HHhh
Q psy4039         188 PDVDDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDM-LMNS  264 (588)
Q Consensus       188 ~~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~-il~~  264 (588)
                      ...+.+..++|++.+.||+|+||.||+|.+.  ++.||||++.....   ..             ....+..|+. +++.
T Consensus        14 ~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~---~~-------------~~~~~~~e~~~~~~~   77 (327)
T 3aln_A           14 EQHWDFTAEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVD---EK-------------EQKQLLMDLDVVMRS   77 (327)
T ss_dssp             CEEECCCSCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCC---HH-------------HHHHHHHHHHHHHSS
T ss_pred             HHhcccCHHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccC---ch-------------HHHHHHHHHHHHHHc
Confidence            4567788899999999999999999999997  89999999964211   10             1112233444 4443


Q ss_pred             hcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHh----cCCCCHH
Q psy4039         265 VENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRER----CAQLSMH  340 (588)
Q Consensus       265 l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~----~~~l~~~  340 (588)
                          .+||||+++++++.+..                            ..++||||+.|+|.+++...    ...+++.
T Consensus        78 ----~~h~niv~~~~~~~~~~----------------------------~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~  125 (327)
T 3aln_A           78 ----SDCPYIVQFYGALFREG----------------------------DCWICMELMSTSFDKFYKYVYSVLDDVIPEE  125 (327)
T ss_dssp             ----CCCTTBCCEEEEEECSS----------------------------EEEEEECCCSEEHHHHHHHHHHTTCCCCCHH
T ss_pred             ----CCCCcEeeeeeEEEeCC----------------------------ceEEEEeecCCChHHHHHHHHhhhcccCcHH
Confidence                49999999999987632                            48999999999999888741    3479999


Q ss_pred             HHHHHHHHHHHHHHHHHhC-CceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccch
Q psy4039         341 ERVLLFTQLLEGVTHLNMH-RTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAP  419 (588)
Q Consensus       341 ~~~~i~~ql~~gL~yLH~~-~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~AP  419 (588)
                      .+..++.|++.||.|||++ ||+||||||+|||++.+     +.+||+|||+++.......      .....||+.|+||
T Consensus       126 ~~~~i~~~i~~~l~~lH~~~~ivH~dlkp~NIll~~~-----~~~kl~Dfg~~~~~~~~~~------~~~~~gt~~y~aP  194 (327)
T 3aln_A          126 ILGKITLATVKALNHLKENLKIIHRDIKPSNILLDRS-----GNIKLCDFGISGQLVDSIA------KTRDAGCRPYMAP  194 (327)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCCCSCCCGGGEEEETT-----TEEEECCCSSSCC-------------------------
T ss_pred             HHHHHHHHHHHHHHHHhccCCEeECCCCHHHEEEcCC-----CCEEEccCCCceecccccc------cccCCCCccccCc
Confidence            9999999999999999999 99999999999999987     8999999999977544221      1134699999999


Q ss_pred             hHHhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccc----ccccccccCCC----CCCccHHHHHHHHHhhhh
Q psy4039         420 EVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARN----TDYEVNALPQL----NTNVPEVMRRLVAKLLEN  491 (588)
Q Consensus       420 E~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~----~~~~~~~~~~~----~~~~~~~l~~Li~~~L~~  491 (588)
                      |++......  ..++.++|||||||++|||++|..||......    ........+.+    +..+++++.+|+.+||+.
T Consensus       195 E~~~~~~~~--~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~  272 (327)
T 3aln_A          195 ERIDPSASR--QGYDVRSDVWSLGITLYELATGRFPYPKWNSVFDQLTQVVKGDPPQLSNSEEREFSPSFINFVNLCLTK  272 (327)
T ss_dssp             -------------CCSHHHHHHHHHHHHHHHHSCCCSSCC-------CCCCCSCCCCCCCCSSCCCCHHHHHHHHHHTCS
T ss_pred             eeeccccCc--CCCCchhhHHHHHHHHHHHHHCCCCCCCcchHHHHHHHHhcCCCCCCCCcccccCCHHHHHHHHHHhhC
Confidence            998432110  11457899999999999999999999763211    11111111222    246899999999999999


Q ss_pred             CCCCCCCHHHHHHHHhhhhhcCCcccc
Q psy4039         492 DPSDRPSAELAATVCQLYLWAPKHWLY  518 (588)
Q Consensus       492 dP~~Rps~~e~l~~L~~~~~~~h~w~~  518 (588)
                      ||++|||++++++         |||+.
T Consensus       273 dp~~Rps~~ell~---------hp~~~  290 (327)
T 3aln_A          273 DESKRPKYKELLK---------HPFIL  290 (327)
T ss_dssp             SGGGSCCHHHHTT---------SHHHH
T ss_pred             ChhhCcCHHHHHh---------ChHHH
Confidence            9999999999988         99997

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=100.00  E-value=6.2e-41  Score=353.63  Aligned_cols=258  Identities=15%  Similarity=0.090  Sum_probs=194.4

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEE-------CCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHh
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATF-------RGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMN  263 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~-------~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~  263 (588)
                      .++..++|.+.+.||+|+||+||+|.+       .++.||||++...                    ....+.+|+.+++
T Consensus        60 ~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~--------------------~~~~~~~e~~~~~  119 (365)
T 3e7e_A           60 FQLGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA--------------------NPWEFYIGTQLME  119 (365)
T ss_dssp             EECSSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC--------------------CHHHHHHHHHHHH
T ss_pred             EEECCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC--------------------ChhHHHHHHHHHH
Confidence            344557899999999999999999942       2889999998431                    1223455777777


Q ss_pred             hhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh----cCCCC
Q psy4039         264 SVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER----CAQLS  338 (588)
Q Consensus       264 ~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~----~~~l~  338 (588)
                      .+. ...|+||+++++++....                            ..++||||+ +|+|.+++...    ...++
T Consensus       120 ~l~-~~~~~~iv~~~~~~~~~~----------------------------~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~  170 (365)
T 3e7e_A          120 RLK-PSMQHMFMKFYSAHLFQN----------------------------GSVLVGELYSYGTLLNAINLYKNTPEKVMP  170 (365)
T ss_dssp             HSC-GGGGGGBCCEEEEEECSS----------------------------CEEEEECCCCSCBHHHHHHHHHTSTTCSCC
T ss_pred             Hhh-hhhhhhhhhhheeeecCC----------------------------CcEEEEeccCCCcHHHHHHHhhcccccCCC
Confidence            662 124999999999987632                            389999999 68999999852    34799


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCC------CCCCCCceeeeccccccccCCCCccccccccccccC
Q psy4039         339 MHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCS------EDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGG  412 (588)
Q Consensus       339 ~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~------~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~G  412 (588)
                      +..++.|+.||+.||+|||++||+||||||+|||++.+      .....+.+||+|||+|+.......   .......+|
T Consensus       171 ~~~~~~i~~qi~~~L~~lH~~~ivHrDiKp~NIll~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~~---~~~~~~~~g  247 (365)
T 3e7e_A          171 QGLVISFAMRMLYMIEQVHDCEIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQSIDMKLFPK---GTIFTAKCE  247 (365)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECGGGTCC------CTTEEECCCTTCEEGGGSCT---TEEECCSSC
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCeecCCCCHHHEEecccccCccccccccCCEEEeeCchhhhhhccCC---CceeeeecC
Confidence            99999999999999999999999999999999999871      001117999999999976432111   111125679


Q ss_pred             CccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccccccccCCCCCCccHHHHHHHHHhhhhC
Q psy4039         413 NVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLEND  492 (588)
Q Consensus       413 T~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~l~~Li~~~L~~d  492 (588)
                      |+.|||||++.+..      ++.++|||||||++|||++|+.||.................  ..++.+.+++..||+.+
T Consensus       248 t~~y~aPE~~~~~~------~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~  319 (365)
T 3e7e_A          248 TSGFQCVEMLSNKP------WNYQIDYFGVAATVYCMLFGTYMKVKNEGGECKPEGLFRRL--PHLDMWNEFFHVMLNIP  319 (365)
T ss_dssp             TTSCCCHHHHTTCC------BSTHHHHHHHHHHHHHHHHSSCCCEEEETTEEEECSCCTTC--SSHHHHHHHHHHHHCCC
T ss_pred             CCCCCChHHhcCCC------CCccccHHHHHHHHHHHHhCCCccccCCCCceeechhcccc--CcHHHHHHHHHHHcCCC
Confidence            99999999998765      45789999999999999999999976433211111111111  34778999999999999


Q ss_pred             CCCC-CCHHHHHHHHhh
Q psy4039         493 PSDR-PSAELAATVCQL  508 (588)
Q Consensus       493 P~~R-ps~~e~l~~L~~  508 (588)
                      |.+| |+++++.+.++.
T Consensus       320 p~~r~~~~~~l~~~l~~  336 (365)
T 3e7e_A          320 DCHHLPSLDLLRQKLKK  336 (365)
T ss_dssp             CTTCCCCHHHHHHHHHH
T ss_pred             CCCcchHHHHHHHHHHH
Confidence            9999 566666665553

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=100.00  E-value=1e-41  Score=346.61  Aligned_cols=259  Identities=19%  Similarity=0.181  Sum_probs=196.9

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEEC---C--eeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhh
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATFR---G--VEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSV  265 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~~---g--~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l  265 (588)
                      ..+..++|++.+.||+|+||+||+|.+.   +  ..||||++........              ...+.+.+|+.+++.+
T Consensus        13 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~--------------~~~~~~~~e~~~l~~l   78 (291)
T 1u46_A           13 CLIGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQP--------------EAMDDFIREVNAMHSL   78 (291)
T ss_dssp             EECCGGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------C--------------HHHHHHHHHHHHHHHC
T ss_pred             cccchhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCH--------------HHHHHHHHHHHHHHhC
Confidence            3455589999999999999999999874   2  3699999853221111              1234566799999987


Q ss_pred             cCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHH
Q psy4039         266 ENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVL  344 (588)
Q Consensus       266 ~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~  344 (588)
                          +||||+++++++.+.                             ..++||||+ +++|.+++......+++..+..
T Consensus        79 ----~h~~i~~~~~~~~~~-----------------------------~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~  125 (291)
T 1u46_A           79 ----DHRNLIRLYGVVLTP-----------------------------PMKMVTELAPLGSLLDRLRKHQGHFLLGTLSR  125 (291)
T ss_dssp             ----CCTTBCCEEEEECSS-----------------------------SCEEEEECCTTCBHHHHHHHHGGGSCHHHHHH
T ss_pred             ----CCCCcccEEEEEccC-----------------------------CceeeEecccCCCHHHHHHhccCCcCHHHHHH
Confidence                899999999998752                             178999999 5899999988655799999999


Q ss_pred             HHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhc
Q psy4039         345 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALA  424 (588)
Q Consensus       345 i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~  424 (588)
                      ++.|+++||.|||++||+||||||+|||++.+     +.+||+|||+++.........  .......||+.|+|||++.+
T Consensus       126 ~~~~i~~~l~~lH~~~i~H~dikp~Nili~~~-----~~~kl~Dfg~~~~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~  198 (291)
T 1u46_A          126 YAVQVAEGMGYLESKRFIHRDLAARNLLLATR-----DLVKIGDFGLMRALPQNDDHY--VMQEHRKVPFAWCAPESLKT  198 (291)
T ss_dssp             HHHHHHHHHHHHHHTTEECSCCCGGGEEEEET-----TEEEECCCTTCEECCC-CCEE--EC-----CCGGGCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCcccCCCchheEEEcCC-----CCEEEccccccccccccccch--hhhccCCCCceeeCchhhcC
Confidence            99999999999999999999999999999987     799999999998765432211  11124568889999999987


Q ss_pred             CCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCccccccccc----cccccCCCCCCccHHHHHHHHHhhhhCCCCCCCH
Q psy4039         425 TPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTDY----EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSA  499 (588)
Q Consensus       425 ~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~~----~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~  499 (588)
                      ..      ++.++||||||+++|||++ |..||.+.......    ........+..+|+++.+++.+||+.||.+|||+
T Consensus       199 ~~------~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~  272 (291)
T 1u46_A          199 RT------FSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPRPEDCPQDIYNVMVQCWAHKPEDRPTF  272 (291)
T ss_dssp             CE------EEHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTSCCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             CC------CCchhhHHHHHHHHHHHHhCCCCCcccCCHHHHHHHHHccCCCCCCCcCcCHHHHHHHHHHccCCcccCcCH
Confidence            64      3467999999999999999 99999764322111    1122334556889999999999999999999999


Q ss_pred             HHHHHHHhhh
Q psy4039         500 ELAATVCQLY  509 (588)
Q Consensus       500 ~e~l~~L~~~  509 (588)
                      +++++.|+..
T Consensus       273 ~~l~~~l~~~  282 (291)
T 1u46_A          273 VALRDFLLEA  282 (291)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999977743

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=100.00  E-value=1.3e-41  Score=350.68  Aligned_cols=270  Identities=20%  Similarity=0.234  Sum_probs=205.1

Q ss_pred             CCCccccccCCeEEeeeecccCceeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhc
Q psy4039         187 LPDVDDVKVDDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVE  266 (588)
Q Consensus       187 ~~~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~  266 (588)
                      ....+++..++|++.+.||+|+||.||+|.+.+ .||||++......               ....+.+.+|+.+++.+ 
T Consensus        24 ~~~~~~i~~~~~~~~~~lg~G~~g~V~~~~~~~-~~avk~~~~~~~~---------------~~~~~~~~~e~~~l~~l-   86 (319)
T 2y4i_B           24 FLQEWDIPFEQLEIGELIGKGRFGQVYHGRWHG-EVAIRLIDIERDN---------------EDQLKAFKREVMAYRQT-   86 (319)
T ss_dssp             CGGGSSSCCSCEECCCBCCCSSSSEEEEEEESS-SEEEEECCCCSCC---------------CCCCCCCCTTGGGGTTC-
T ss_pred             ccccccCCHHHeEEeeEeccCCceEEEEEEEcC-eEEEEEeecCCCC---------------HHHHHHHHHHHHHHhcC-
Confidence            356788889999999999999999999999875 5999998542211               11345567899999887 


Q ss_pred             CCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHH
Q psy4039         267 NLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLL  345 (588)
Q Consensus       267 ~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i  345 (588)
                         +||||+++++++.+..                            ..++||||+ +++|.+++......+++.+++.+
T Consensus        87 ---~h~~iv~~~~~~~~~~----------------------------~~~iv~e~~~~~~L~~~l~~~~~~~~~~~~~~i  135 (319)
T 2y4i_B           87 ---RHENVVLFMGACMSPP----------------------------HLAIITSLCKGRTLYSVVRDAKIVLDVNKTRQI  135 (319)
T ss_dssp             ---CCTTBCCCCEEEECSS----------------------------CEEEECBCCCSEEHHHHTTSSCCCCCSHHHHHH
T ss_pred             ---CCCCEeEEEEEEecCC----------------------------ceEEEeecccCCcHHHHHHhcCCCCCHHHHHHH
Confidence               8999999999988632                            389999999 57999999876557999999999


Q ss_pred             HHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcC
Q psy4039         346 FTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALAT  425 (588)
Q Consensus       346 ~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~  425 (588)
                      +.||+.||.|||++||+||||||+|||++ +     +.+||+|||+++..................||+.|+|||++.+.
T Consensus       136 ~~qi~~al~~lH~~~i~H~dlkp~NIl~~-~-----~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~  209 (319)
T 2y4i_B          136 AQEIVKGMGYLHAKGILHKDLKSKNVFYD-N-----GKVVITDFGLFSISGVLQAGRREDKLRIQNGWLCHLAPEIIRQL  209 (319)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCCCSTTEEEC--------CCEECCCSCCC----------CCSCBCCSGGGGTSCHHHHSCB
T ss_pred             HHHHHHHHHHHHhCCccccCCChhhEEEe-C-----CCEEEeecCCccccccccccccccccccCCCcccccChHHhhhc
Confidence            99999999999999999999999999997 3     58999999998765331111111122245699999999999753


Q ss_pred             CCC---ccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccc---cccccCC-CCCCccHHHHHHHHHhhhhCCCCCCC
Q psy4039         426 PGL---FSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY---EVNALPQ-LNTNVPEVMRRLVAKLLENDPSDRPS  498 (588)
Q Consensus       426 ~~~---~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~---~~~~~~~-~~~~~~~~l~~Li~~~L~~dP~~Rps  498 (588)
                      ...   ....++.++|||||||++|||++|+.||.........   .....+. .+..+|+++.+++.+||+.||.+|||
T Consensus       210 ~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt  289 (319)
T 2y4i_B          210 SPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPAEAIIWQMGTGMKPNLSQIGMGKEISDILLFCWAFEQEERPT  289 (319)
T ss_dssp             SCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCCHHHHHHHHHTTCCCCCCCSSCCTTHHHHHHHHHCSSTTTSCC
T ss_pred             cccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhccCCCCCCCcCCCCHHHHHHHHHHhcCChhhCcC
Confidence            210   0111456799999999999999999999764322111   1111222 22367889999999999999999999


Q ss_pred             HHHHHHHHhhhh
Q psy4039         499 AELAATVCQLYL  510 (588)
Q Consensus       499 ~~e~l~~L~~~~  510 (588)
                      ++++++.|+...
T Consensus       290 ~~~l~~~l~~l~  301 (319)
T 2y4i_B          290 FTKLMDMLEKLP  301 (319)
T ss_dssp             HHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHH
Confidence            999999887543

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.1e-41  Score=361.48  Aligned_cols=256  Identities=19%  Similarity=0.220  Sum_probs=191.9

Q ss_pred             CCeEEeeeecccCceeEEEEEEC-----CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCC
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR-----GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPP  270 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~-----g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~  270 (588)
                      ..|++.+.||+|+||.||+|.+.     +..||||.+......                ...+.+.+|+.+++.+    +
T Consensus        89 ~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~----------------~~~~~~~~E~~il~~l----~  148 (373)
T 3c1x_A           89 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDI----------------GEVSQFLTEGIIMKDF----S  148 (373)
T ss_dssp             EEEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCS----------------HHHHHHHHHHTTSTTC----C
T ss_pred             ceeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCH----------------HHHHHHHHHHHHHHhC----C
Confidence            34788999999999999999975     246899998531110                0223456788888887    8


Q ss_pred             CCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4039         271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQL  349 (588)
Q Consensus       271 HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql  349 (588)
                      |||||++++++.+..                           ...++||||+ +|+|.+++......+++.+++.++.||
T Consensus       149 hpnIv~~~~~~~~~~---------------------------~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi  201 (373)
T 3c1x_A          149 HPNVLSLLGICLRSE---------------------------GSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQV  201 (373)
T ss_dssp             CTTBCCCCEEECCCS---------------------------SCCEEEEECCTTCBHHHHHHCTTCCCBHHHHHHHHHHH
T ss_pred             CCCcceEEEEEEcCC---------------------------CCeEEEEECCCCCCHHHHHhhcccCCCHHHHHHHHHHH
Confidence            999999999875421                           1378999999 579999998766679999999999999


Q ss_pred             HHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCc
Q psy4039         350 LEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF  429 (588)
Q Consensus       350 ~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~  429 (588)
                      ++||.|||++||+||||||+|||++.+     +.+||+|||+++......... ........||+.|+|||++.+..   
T Consensus       202 ~~aL~~LH~~~ivHrDlkp~NIll~~~-----~~~kL~DFG~a~~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~---  272 (373)
T 3c1x_A          202 AKGMKFLASKKFVHRDLAARNCMLDEK-----FTVKVADFGLARDMYDKEFDS-VHNKTGAKLPVKWMALESLQTQK---  272 (373)
T ss_dssp             HHHHHHHHHTTCCCSCCCGGGEEECTT-----CCEEECCC----------------------CCGGGSCHHHHHHCC---
T ss_pred             HHHHHHHHHCCEecCccchheEEECCC-----CCEEEeecccccccccccccc-ccccCCCCCcccccChHHhcCCC---
Confidence            999999999999999999999999987     899999999998654322111 11112456888999999998765   


Q ss_pred             cCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHH
Q psy4039         430 SFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATV  505 (588)
Q Consensus       430 ~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~  505 (588)
                         ++.++|||||||++|||++ |.+||........   ......+..+..+|+++.++|.+||+.||++|||++++++.
T Consensus       273 ---~~~~~DvwSlG~il~ellt~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~li~~cl~~dp~~RPs~~ell~~  349 (373)
T 3c1x_A          273 ---FTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSR  349 (373)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHTTSCCSCTTSCSSCHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ---CCcHHHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence               4578999999999999999 6777765322211   11223344567799999999999999999999999999998


Q ss_pred             Hhhhh
Q psy4039         506 CQLYL  510 (588)
Q Consensus       506 L~~~~  510 (588)
                      |+..+
T Consensus       350 L~~i~  354 (373)
T 3c1x_A          350 ISAIF  354 (373)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88664

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=100.00  E-value=1.2e-41  Score=355.60  Aligned_cols=253  Identities=23%  Similarity=0.341  Sum_probs=177.9

Q ss_pred             ccCCeEEee-eecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCC
Q psy4039         194 KVDDIQIGK-FIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPP  270 (588)
Q Consensus       194 ~~~~~~~~~-~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~  270 (588)
                      ..++|.+.+ .||+|+||+||+|.+.  ++.||||++...                      ....+|+..+...   .+
T Consensus        26 ~~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~----------------------~~~~~e~~~~~~~---~~   80 (336)
T 3fhr_A           26 VTDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDS----------------------PKARQEVDHHWQA---SG   80 (336)
T ss_dssp             GGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESS----------------------HHHHHHHHHHHHH---TT
T ss_pred             ccceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCc----------------------HHHHHHHHHHHHh---cC
Confidence            348899955 6999999999999998  889999998431                      1112233333222   48


Q ss_pred             CCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc-CCCCHHHHHHHHHH
Q psy4039         271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC-AQLSMHERVLLFTQ  348 (588)
Q Consensus       271 HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~-~~l~~~~~~~i~~q  348 (588)
                      ||||+++++++....                        .....+++||||+ +|+|.+++.... ..+++.+++.++.|
T Consensus        81 h~~i~~~~~~~~~~~------------------------~~~~~~~lv~e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~q  136 (336)
T 3fhr_A           81 GPHIVCILDVYENMH------------------------HGKRCLLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRD  136 (336)
T ss_dssp             STTBCCEEEEEEEEE------------------------TTEEEEEEEEECCTTEEHHHHHHTC-CCCCBHHHHHHHHHH
T ss_pred             CCChHHHHHHHhhcc------------------------CCCceEEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHH
Confidence            999999999987632                        1133589999999 569999998753 36999999999999


Q ss_pred             HHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCC
Q psy4039         349 LLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGL  428 (588)
Q Consensus       349 l~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~  428 (588)
                      |+.||.|||++||+||||||+|||++.+..  .+.+||+|||+++.......       ....||+.|+|||++.+..  
T Consensus       137 l~~~l~~LH~~~ivH~dlkp~NIll~~~~~--~~~~kl~Dfg~~~~~~~~~~-------~~~~~t~~y~aPE~~~~~~--  205 (336)
T 3fhr_A          137 IGTAIQFLHSHNIAHRDVKPENLLYTSKEK--DAVLKLTDFGFAKETTQNAL-------QTPCYTPYYVAPEVLGPEK--  205 (336)
T ss_dssp             HHHHHHHHHHTTEECSCCSGGGEEESCSST--TCCEEECCCTTCEEC-----------------------------CH--
T ss_pred             HHHHHHHHHhCCeecCCCCHHHEEEEecCC--CceEEEeccccceecccccc-------ccCCCCcCccChhhhCCCC--
Confidence            999999999999999999999999986421  15799999999986543211       1456899999999986543  


Q ss_pred             ccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccc-------cc---ccccCCCCCCccHHHHHHHHHhhhhCCCCCCC
Q psy4039         429 FSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD-------YE---VNALPQLNTNVPEVMRRLVAKLLENDPSDRPS  498 (588)
Q Consensus       429 ~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~-------~~---~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps  498 (588)
                          ++.++|||||||++|||++|..||........       ..   .......+..+++++++||.+||+.||.+|||
T Consensus       206 ----~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt  281 (336)
T 3fhr_A          206 ----YDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPGMKRRIRLGQYGFPNPEWSEVSEDAKQLIRLLLKTDPTERLT  281 (336)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHSSCCC---------------------CCCTTTSTTCCHHHHHHHHHHSCSSGGGSCC
T ss_pred             ----CCchhhHHHHHHHHHHHHHCCCCCCCccchhhhhhHHHhhhccccccCchhhccCCHHHHHHHHHHCCCChhHCcC
Confidence                34679999999999999999999976432211       00   01112233578999999999999999999999


Q ss_pred             HHHHHHHHhhhhhcCCccccC
Q psy4039         499 AELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       499 ~~e~l~~L~~~~~~~h~w~~~  519 (588)
                      ++++++         |||++.
T Consensus       282 ~~ell~---------hp~~~~  293 (336)
T 3fhr_A          282 ITQFMN---------HPWINQ  293 (336)
T ss_dssp             HHHHHH---------SHHHHT
T ss_pred             HHHHhc---------Cccccc
Confidence            999999         999973

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=3.6e-41  Score=343.77  Aligned_cols=256  Identities=20%  Similarity=0.259  Sum_probs=200.6

Q ss_pred             CCeEEeeeecccCceeEEEEEEC-----CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCC
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR-----GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPP  270 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~-----g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~  270 (588)
                      -.|..++.||+|+||+||+|.+.     +..||||++....   ..             ...+.+.+|+.+++.+    +
T Consensus        21 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~---~~-------------~~~~~~~~E~~~l~~l----~   80 (298)
T 3pls_A           21 VVTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRIT---EM-------------QQVEAFLREGLLMRGL----N   80 (298)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCC---SH-------------HHHHHHHHHHHHHHTC----C
T ss_pred             eEEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccc---cH-------------HHHHHHHHHHHHHHhC----C
Confidence            35677899999999999999874     2379999984311   10             0123456789999887    8


Q ss_pred             CCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4039         271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQL  349 (588)
Q Consensus       271 HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql  349 (588)
                      ||||+++++++.+..                           ...+++|||+ +|+|.+++......+++..++.++.|+
T Consensus        81 h~~iv~~~~~~~~~~---------------------------~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~qi  133 (298)
T 3pls_A           81 HPNVLALIGIMLPPE---------------------------GLPHVLLPYMCHGDLLQFIRSPQRNPTVKDLISFGLQV  133 (298)
T ss_dssp             CTTBCCCCEEECCSS---------------------------SCCEEEECCCTTCBHHHHHHCTTCCCBHHHHHHHHHHH
T ss_pred             CCCeeeEEEEEecCC---------------------------CCcEEEEecccCCCHHHHHhccccCCCHHHHHHHHHHH
Confidence            999999999987532                           1258999999 789999998766689999999999999


Q ss_pred             HHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCc
Q psy4039         350 LEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF  429 (588)
Q Consensus       350 ~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~  429 (588)
                      +.||.|||++||+||||||+|||++.+     +.+||+|||+++......... ........||+.|+|||++.+..   
T Consensus       134 ~~~l~~LH~~~i~H~dikp~Nili~~~-----~~~kl~Dfg~~~~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~---  204 (298)
T 3pls_A          134 ARGMEYLAEQKFVHRDLAARNCMLDES-----FTVKVADFGLARDILDREYYS-VQQHRHARLPVKWTALESLQTYR---  204 (298)
T ss_dssp             HHHHHHHHHTTCCCSCCSGGGEEECTT-----CCEEECCTTSSCTTTTGGGGC-SCCSSCTTCGGGGSCHHHHTTCC---
T ss_pred             HHHHHHHHhCCcccCCCCcceEEEcCC-----CcEEeCcCCCcccccCCcccc-cccCcCCCCCccccChhhhccCC---
Confidence            999999999999999999999999887     799999999998654422111 11122456899999999997654   


Q ss_pred             cCCCCCcCchhhHHHHHHHHhcCCCCCcccccccc----ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHH
Q psy4039         430 SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD----YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATV  505 (588)
Q Consensus       430 ~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~----~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~  505 (588)
                         ++.++|||||||++|||++|..|+........    .........+..+++++.+++.+||+.||.+|||++++++.
T Consensus       205 ---~~~~~Di~slG~il~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~  281 (298)
T 3pls_A          205 ---FTTKSDVWSFGVLLWELLTRGAPPYRHIDPFDLTHFLAQGRRLPQPEYCPDSLYQVMQQCWEADPAVRPTFRVLVGE  281 (298)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHTSCCTTTTSCGGGHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ---CChhhchhhHHHHHHHHhhCCCCCCccCCHHHHHHHhhcCCCCCCCccchHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence               45689999999999999996665544322211    11223344567789999999999999999999999999998


Q ss_pred             Hhhhh
Q psy4039         506 CQLYL  510 (588)
Q Consensus       506 L~~~~  510 (588)
                      |+..+
T Consensus       282 l~~~~  286 (298)
T 3pls_A          282 VEQIV  286 (298)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87654

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=100.00  E-value=1e-41  Score=368.61  Aligned_cols=261  Identities=22%  Similarity=0.290  Sum_probs=195.3

Q ss_pred             cccCCeEEeeeecccCcee-EEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCC
Q psy4039         193 VKVDDIQIGKFIAKGTNAV-VYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPH  271 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~-Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~H  271 (588)
                      +.-.+|.+.+.||+|+||+ ||++...++.||||++...                    ......+|+.+++.+   .+|
T Consensus        21 i~~~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~--------------------~~~~~~~E~~~l~~l---~~H   77 (432)
T 3p23_A           21 VGKISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPE--------------------CFSFADREVQLLRES---DEH   77 (432)
T ss_dssp             ETTEEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTT--------------------TEEECHHHHHHHHHS---CCC
T ss_pred             EccEEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHH--------------------HHHHHHHHHHHHHhc---cCC
Confidence            3335699999999999998 5666767999999998421                    122356799999886   579


Q ss_pred             CceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4039         272 PNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLE  351 (588)
Q Consensus       272 pNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~  351 (588)
                      ||||++++++.+..                            ..|+|||+++|+|.+++......+++..++.++.||+.
T Consensus        78 pnIv~l~~~~~~~~----------------------------~~~lv~E~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~  129 (432)
T 3p23_A           78 PNVIRYFCTEKDRQ----------------------------FQYIAIELCAATLQEYVEQKDFAHLGLEPITLLQQTTS  129 (432)
T ss_dssp             TTBCCEEEEEEETT----------------------------EEEEEEECCSEEHHHHHHSSSCCCCSSCHHHHHHHHHH
T ss_pred             CCcCeEEEEEecCC----------------------------EEEEEEECCCCCHHHHHHhcCCCccchhHHHHHHHHHH
Confidence            99999999987632                            48999999999999999877556677778899999999


Q ss_pred             HHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccC
Q psy4039         352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF  431 (588)
Q Consensus       352 gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~  431 (588)
                      ||.|||++||+||||||+|||++.+.......+||+|||+|+....+...  .......+||+.|+|||++.+....   
T Consensus       130 aL~~LH~~~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~~~~~~--~~~~~~~~gt~~y~APE~l~~~~~~---  204 (432)
T 3p23_A          130 GLAHLHSLNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHS--FSRRSGVPGTEGWIAPEMLSEDCKE---  204 (432)
T ss_dssp             HHHHHHHTTCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC--------------CCSCTTSCCGGGTSCC------
T ss_pred             HHHHHHHCcCEeCCCCHHHEEEecCCCCCceeEEEecccceeeccCCCcc--eeeccccCCCcCccChhhhhccccc---
Confidence            99999999999999999999996543222256889999999876543211  1112246799999999999743211   


Q ss_pred             CCCCcCchhhHHHHHHHHhc-CCCCCcccccccccccc-----ccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHH
Q psy4039         432 VNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTDYEVN-----ALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATV  505 (588)
Q Consensus       432 ~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~~~~~-----~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~  505 (588)
                      ..+.++|||||||++|||++ |..||............     .....+...+..+++||.+||+.||.+|||++++++ 
T Consensus       205 ~~t~~~DiwSlG~il~ellt~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~evl~-  283 (432)
T 3p23_A          205 NPTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQANILLGACSLDCLHPEKHEDVIARELIEKMIAMDPQKRPSAKHVLK-  283 (432)
T ss_dssp             CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTTHHHHHHTTCCCCTTSCTTCHHHHHHHHHHHHHSCSSGGGSCCHHHHHT-
T ss_pred             CCCcHHHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHhccCCccccCccccccHHHHHHHHHHHhCCHhhCCCHHHHHh-
Confidence            13468999999999999999 89999654222111100     011112334667899999999999999999999999 


Q ss_pred             HhhhhhcCCcccc
Q psy4039         506 CQLYLWAPKHWLY  518 (588)
Q Consensus       506 L~~~~~~~h~w~~  518 (588)
                              |||+.
T Consensus       284 --------hp~f~  288 (432)
T 3p23_A          284 --------HPFFW  288 (432)
T ss_dssp             --------STTTC
T ss_pred             --------Ccccc
Confidence                    99995

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=100.00  E-value=3.8e-41  Score=345.65  Aligned_cols=252  Identities=23%  Similarity=0.213  Sum_probs=197.9

Q ss_pred             eEEeeeecccCceeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEE
Q psy4039         198 IQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVM  277 (588)
Q Consensus       198 ~~~~~~IG~G~fG~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l  277 (588)
                      |..++.||+|+||.||+|.+.+..||||++.........             ...+.+.+|+.+++.+    +||||+++
T Consensus        33 ~~~~~~lg~G~~g~Vy~~~~~~~~vavK~~~~~~~~~~~-------------~~~~~~~~E~~~l~~l----~h~~i~~~   95 (307)
T 2nru_A           33 SVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTE-------------ELKQQFDQEIKVMAKC----QHENLVEL   95 (307)
T ss_dssp             TTTCCEEEECSSEEEEEEESSSCEEEEEEECCCTTSCTT-------------THHHHHHHHHHHHHHC----CCTTBCCE
T ss_pred             cccCCccccCCCeEEEEEEECCceEEEEEEecccCcchH-------------HHHHHHHHHHHHHHhc----CCCCeEEE
Confidence            445688999999999999999999999998542211110             1234566799999987    89999999


Q ss_pred             eeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh--cCCCCHHHHHHHHHHHHHHHH
Q psy4039         278 HFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER--CAQLSMHERVLLFTQLLEGVT  354 (588)
Q Consensus       278 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~--~~~l~~~~~~~i~~ql~~gL~  354 (588)
                      ++++.+..                            ..++||||+ +++|.+++...  ...+++..++.++.|++.||.
T Consensus        96 ~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~  147 (307)
T 2nru_A           96 LGFSSDGD----------------------------DLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGIN  147 (307)
T ss_dssp             EEEECSSS----------------------------SCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHH
T ss_pred             EEEEecCC----------------------------ceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHH
Confidence            99987632                            389999999 68999999753  336999999999999999999


Q ss_pred             HHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCC
Q psy4039         355 HLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY  434 (588)
Q Consensus       355 yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~  434 (588)
                      |||++||+||||||+|||++.+     +.+||+|||+++.........   ......||+.|+|||++.+.       ++
T Consensus       148 ~lH~~~i~H~dlkp~Nili~~~-----~~~kl~Dfg~~~~~~~~~~~~---~~~~~~g~~~y~aPE~~~~~-------~~  212 (307)
T 2nru_A          148 FLHENHHIHRDIKSANILLDEA-----FTAKISDFGLARASEKFAQTV---MTSRIVGTTAYMAPEALRGE-------IT  212 (307)
T ss_dssp             HHHHTTEECSCCCGGGEEECTT-----CCEEECCCTTCEECCSCSSCE---ECSSCCSCGGGCCHHHHTTE-------EC
T ss_pred             HHhcCCeecCCCCHHHEEEcCC-----CcEEEeecccccccccccccc---cccccCCCcCcCChHHhcCC-------CC
Confidence            9999999999999999999987     899999999998765422211   11245799999999998643       35


Q ss_pred             CcCchhhHHHHHHHHhcCCCCCcccccccccc-----------------ccccCCCCCCccHHHHHHHHHhhhhCCCCCC
Q psy4039         435 SKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE-----------------VNALPQLNTNVPEVMRRLVAKLLENDPSDRP  497 (588)
Q Consensus       435 ~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~-----------------~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rp  497 (588)
                      .++|||||||++|||++|..||..........                 ....+..+..+++.+.+++.+||+.||.+||
T Consensus       213 ~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp  292 (307)
T 2nru_A          213 PKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRP  292 (307)
T ss_dssp             THHHHHHHHHHHHHHHHCCCSBCTTBSSSBTTHHHHHHHTTSCCHHHHSCSSCSCCCHHHHHHHHHHHHHHTCSSTTTSC
T ss_pred             ccchhHHHHHHHHHHHHCCCCcccCcchHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHcCCCcccCc
Confidence            78999999999999999999997642211110                 0111222344567899999999999999999


Q ss_pred             CHHHHHHHHhhh
Q psy4039         498 SAELAATVCQLY  509 (588)
Q Consensus       498 s~~e~l~~L~~~  509 (588)
                      |++++++.|+.+
T Consensus       293 s~~~l~~~L~~l  304 (307)
T 2nru_A          293 DIKKVQQLLQEM  304 (307)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            999999988753

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=100.00  E-value=3e-41  Score=358.56  Aligned_cols=256  Identities=21%  Similarity=0.225  Sum_probs=195.3

Q ss_pred             cccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCC--
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENL--  268 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l--  268 (588)
                      ...++|++.+.||+|+||+||+|.+.  ++.||||++....      .            ....+.+|+.+++.+...  
T Consensus        51 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~------~------------~~~~~~~e~~~l~~l~~~~~  112 (382)
T 2vx3_A           51 KWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKK------A------------FLNQAQIEVRLLELMNKHDT  112 (382)
T ss_dssp             EETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSSH------H------------HHHHHHHHHHHHHHHHHCSS
T ss_pred             EeeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEeccH------H------------HHHHHHHHHHHHHHHHhccc
Confidence            34589999999999999999999987  7899999995310      0            112344577777766211  


Q ss_pred             CCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhc-CCCCHHHHHHHHH
Q psy4039         269 PPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERC-AQLSMHERVLLFT  347 (588)
Q Consensus       269 ~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~-~~l~~~~~~~i~~  347 (588)
                      ..|++|+++++++....                            .+++||||++|+|.+++.... ..+++..+..++.
T Consensus       113 ~~~~~iv~~~~~~~~~~----------------------------~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~i~~  164 (382)
T 2vx3_A          113 EMKYYIVHLKRHFMFRN----------------------------HLCLVFEMLSYNLYDLLRNTNFRGVSLNLTRKFAQ  164 (382)
T ss_dssp             GGGGGBCCEEEEEEETT----------------------------EEEEEEECCCCBHHHHHHHTTTSCCCHHHHHHHHH
T ss_pred             ccceeEEEeeeeeccCC----------------------------ceEEEEecCCCCHHHHHhhcCcCCCCHHHHHHHHH
Confidence            12345999999987632                            499999999999999998763 4699999999999


Q ss_pred             HHHHHHHHHH--hCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcC
Q psy4039         348 QLLEGVTHLN--MHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALAT  425 (588)
Q Consensus       348 ql~~gL~yLH--~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~  425 (588)
                      |++.||.|||  +.||+||||||+|||++.+..   +.+||+|||+|+......        ....||+.|+|||++.+.
T Consensus       165 qi~~al~~lH~~~~~ivHrDlkp~NIll~~~~~---~~~kL~DFG~a~~~~~~~--------~~~~~t~~y~aPE~~~~~  233 (382)
T 2vx3_A          165 QMCTALLFLATPELSIIHCDLKPENILLCNPKR---SAIKIVDFGSSCQLGQRI--------YQYIQSRFYRSPEVLLGM  233 (382)
T ss_dssp             HHHHHHHHHTSTTTCEECCCCSGGGEEESSTTS---CCEEECCCTTCEETTCCC--------CSSCSCGGGCCHHHHTTC
T ss_pred             HHHHHHHHhccCCCCEEcCCCCcccEEEecCCC---CcEEEEeccCceeccccc--------ccccCCccccChHHHcCC
Confidence            9999999999  479999999999999964322   689999999998764321        145799999999999876


Q ss_pred             CCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccccc-----------------------ccc------------
Q psy4039         426 PGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV-----------------------NAL------------  470 (588)
Q Consensus       426 ~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~-----------------------~~~------------  470 (588)
                      .      ++.++|||||||++|||++|+.||.+.........                       ...            
T Consensus       234 ~------~~~~~DiwSlG~il~elltg~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (382)
T 2vx3_A          234 P------YDLAIDMWSLGCILVEMHTGEPLFSGANEVDQMNKIVEVLGIPPAHILDQAPKARKFFEKLPDGTWNLKKTKD  307 (382)
T ss_dssp             C------CCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHTTCTTHHHHEEECTTSCEEECCCCT
T ss_pred             C------CCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhHHHHHHHHhccccccccccccc
Confidence            5      45789999999999999999999976311100000                       000            


Q ss_pred             ------CCCCC-------------------------CccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccC
Q psy4039         471 ------PQLNT-------------------------NVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       471 ------~~~~~-------------------------~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~  519 (588)
                            ++...                         ..++++++||.+||+.||++|||++|+++         ||||+.
T Consensus       308 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~Rpta~e~L~---------hp~f~~  378 (382)
T 2vx3_A          308 GKREYKPPGTRKLHNILGVETGGPGGRRAGESGHTVADYLKFKDLILRMLDYDPKTRIQPYYALQ---------HSFFKK  378 (382)
T ss_dssp             TCCCSCCTTCSCHHHHHTTTTTSGGGTTTTCTTCCHHHHHHHHHHHHHHTCSCTTTSCCHHHHTT---------SGGGCC
T ss_pred             cccccCCcchhhHHHHhhccccCCCccccccccccchhhHHHHHHHHHhcCCChhhCCCHHHHhc---------Cccccc
Confidence                  00000                         01147899999999999999999999999         999975


Q ss_pred             C
Q psy4039         520 A  520 (588)
Q Consensus       520 ~  520 (588)
                      .
T Consensus       379 ~  379 (382)
T 2vx3_A          379 T  379 (382)
T ss_dssp             -
T ss_pred             C
Confidence            4

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=100.00  E-value=8.7e-42  Score=356.67  Aligned_cols=274  Identities=17%  Similarity=0.223  Sum_probs=207.0

Q ss_pred             CccccccCCeEEeeeecccCceeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCC
Q psy4039         189 DVDDVKVDDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENL  268 (588)
Q Consensus       189 ~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l  268 (588)
                      ....+..++|.+.+.||+|+||.||+|.+.++.||||++...........................+.+|+.+++.+   
T Consensus        24 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l---  100 (348)
T 2pml_X           24 KEKDKYINDYRIIRTLNQGKFNKIILCEKDNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDI---  100 (348)
T ss_dssp             SSSCEEETTEEEEEEEECCSSCCEEEEEETTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTC---
T ss_pred             hhcccccCceEEEEEEcCCCCeEEEEEEcCCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhC---
Confidence            34456679999999999999999999999999999999953211100000000000000000015677899999987   


Q ss_pred             CCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCC-CcHHHH------HHHh-cCCCCHH
Q psy4039         269 PPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYN-TDLRNY------LRER-CAQLSMH  340 (588)
Q Consensus       269 ~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~-gsL~~~------L~~~-~~~l~~~  340 (588)
                       +||||+++++++.+..                            ..++||||+. |+|.++      +... ...+++.
T Consensus       101 -~h~~i~~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~  151 (348)
T 2pml_X          101 -KNEYCLTCEGIITNYD----------------------------EVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQ  151 (348)
T ss_dssp             -CCTTBCCCSEEEESSS----------------------------EEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHH
T ss_pred             -CCCCcceEEEEEeeCC----------------------------eEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHH
Confidence             8999999999988632                            4999999995 699998      6542 3479999


Q ss_pred             HHHHHHHHHHHHHHHHHh-CCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccch
Q psy4039         341 ERVLLFTQLLEGVTHLNM-HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAP  419 (588)
Q Consensus       341 ~~~~i~~ql~~gL~yLH~-~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~AP  419 (588)
                      .++.++.|++.||.|||+ +||+||||||+|||++.+     +.+||+|||++.......       .....||+.|+||
T Consensus       152 ~~~~i~~qi~~~l~~lH~~~~i~H~dl~p~Nil~~~~-----~~~kl~dfg~~~~~~~~~-------~~~~~~~~~y~aP  219 (348)
T 2pml_X          152 VIKCIIKSVLNSFSYIHNEKNICHRDVKPSNILMDKN-----GRVKLSDFGESEYMVDKK-------IKGSRGTYEFMPP  219 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSCEECCCCCGGGEEECTT-----SCEEECCCTTCEECBTTE-------ECSSCSCGGGCCG
T ss_pred             HHHHHHHHHHHHHHHHhccCCEeecCCChHhEEEcCC-----CcEEEecccccccccccc-------ccCCCCCcCccCc
Confidence            999999999999999999 999999999999999987     799999999998754431       1245699999999


Q ss_pred             hHHhcCCCCccCCCCC-cCchhhHHHHHHHHhcCCCCCccccccc-ccc--ccccCCCC-------------------CC
Q psy4039         420 EVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNT-DYE--VNALPQLN-------------------TN  476 (588)
Q Consensus       420 E~l~~~~~~~~~~~~~-ksDVwS~Gvil~ElltG~~Pf~~~~~~~-~~~--~~~~~~~~-------------------~~  476 (588)
                      |++.+...     ++. ++|||||||++|||++|..||....... ...  ......++                   ..
T Consensus       220 E~~~~~~~-----~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (348)
T 2pml_X          220 EFFSNESS-----YNGAKVDIWSLGICLYVMFYNVVPFSLKISLVELFNNIRTKNIEYPLDRNHFLYPLTNKKSTCSNNF  294 (348)
T ss_dssp             GGGSSCCC-----EEHHHHHHHHHHHHHHHHHHSSCSSCCSSCSHHHHHHHTSCCCCCCCSSSSSTTTTCC--------C
T ss_pred             hhhcCCCC-----CCcchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHhccCcCCccchhhhhccccccccccchhh
Confidence            99976521     223 7999999999999999999997643211 000  00111122                   56


Q ss_pred             ccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccCC
Q psy4039         477 VPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGA  520 (588)
Q Consensus       477 ~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~  520 (588)
                      +++++.+|+.+||+.||.+|||++++++         |||++..
T Consensus       295 ~~~~l~~li~~~L~~dP~~Rps~~e~l~---------hp~f~~~  329 (348)
T 2pml_X          295 LSNEDIDFLKLFLRKNPAERITSEDALK---------HEWLADT  329 (348)
T ss_dssp             CCHHHHHHHHHHCCSSGGGSCCHHHHHT---------SGGGTTC
T ss_pred             cCHHHHHHHHHHccCChhhCCCHHHHhc---------CccccCC
Confidence            8999999999999999999999999999         9999754

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=100.00  E-value=1.9e-41  Score=351.84  Aligned_cols=264  Identities=22%  Similarity=0.289  Sum_probs=204.8

Q ss_pred             CccccccCCeEEeeeecccCceeEEEEEEC-------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHH
Q psy4039         189 DVDDVKVDDIQIGKFIAKGTNAVVYEATFR-------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDML  261 (588)
Q Consensus       189 ~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~i  261 (588)
                      ...++..++|++.+.||+|+||.||+|.+.       +..||||++.....   .             .....+.+|+.+
T Consensus        23 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~---~-------------~~~~~~~~E~~~   86 (327)
T 2yfx_A           23 DLKEVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCS---E-------------QDELDFLMEALI   86 (327)
T ss_dssp             GSCBCCGGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCC---H-------------HHHHHHHHHHHH
T ss_pred             hcccCChhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccc---h-------------hhHHHHHHHHHH
Confidence            445667799999999999999999999853       66899999853211   0             012345678999


Q ss_pred             HhhhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc------
Q psy4039         262 MNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC------  334 (588)
Q Consensus       262 l~~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~------  334 (588)
                      ++.+    +||||+++++++.+..                            ..|+||||+ +|+|.+++....      
T Consensus        87 l~~l----~h~~iv~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~~~~~~~  134 (327)
T 2yfx_A           87 ISKF----NHQNIVRCIGVSLQSL----------------------------PRFILMELMAGGDLKSFLRETRPRPSQP  134 (327)
T ss_dssp             HHHC----CCTTBCCEEEEECSSS----------------------------SCEEEEECCTTEEHHHHHHHTSCCSSST
T ss_pred             HhhC----CCCCCCeEEEEEcCCC----------------------------CcEEEEecCCCCcHHHHHHhhccccccc
Confidence            9887    9999999999987632                            379999999 689999998753      


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCc
Q psy4039         335 AQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNV  414 (588)
Q Consensus       335 ~~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~  414 (588)
                      ..+++.+++.++.|++.||.|||++||+||||||+|||++.+...  ..+||+|||+++........   .......||+
T Consensus       135 ~~~~~~~~~~i~~qi~~al~~LH~~~i~H~dlkp~NIli~~~~~~--~~~kl~Dfg~~~~~~~~~~~---~~~~~~~~~~  209 (327)
T 2yfx_A          135 SSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPG--RVAKIGDFGMARDIYRASYY---RKGGCAMLPV  209 (327)
T ss_dssp             TSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTT--CCEEECCCHHHHHHHC---------CCGGGSCG
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhhCCeecCcCCHhHEEEecCCCc--ceEEECcccccccccccccc---ccCCCcCCCc
Confidence            359999999999999999999999999999999999999854211  57999999999764332211   1112456899


Q ss_pred             cccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhh
Q psy4039         415 ALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLE  490 (588)
Q Consensus       415 ~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~  490 (588)
                      .|+|||++.+..      ++.++|||||||++|||++ |..||........   ......+..+..+++.+.++|.+||+
T Consensus       210 ~y~aPE~~~~~~------~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~  283 (327)
T 2yfx_A          210 KWMPPEAFMEGI------FTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPKNCPGPVYRIMTQCWQ  283 (327)
T ss_dssp             GGCCHHHHHHCC------CCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTC
T ss_pred             ceeCHhHhcCCC------CCchhhHHHHHHHHHHHHcCCCCCCCCcCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHhc
Confidence            999999998765      4568999999999999998 9999976432211   11223345567889999999999999


Q ss_pred             hCCCCCCCHHHHHHHHhhhhh
Q psy4039         491 NDPSDRPSAELAATVCQLYLW  511 (588)
Q Consensus       491 ~dP~~Rps~~e~l~~L~~~~~  511 (588)
                      .||.+|||++++++.|+...+
T Consensus       284 ~dp~~Rps~~~ll~~l~~~~~  304 (327)
T 2yfx_A          284 HQPEDRPNFAIILERIEYCTQ  304 (327)
T ss_dssp             SSGGGSCCHHHHHHHHHHHHH
T ss_pred             CChhhCcCHHHHHHHHHHHhc
Confidence            999999999999998776654

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=100.00  E-value=1e-40  Score=343.13  Aligned_cols=255  Identities=25%  Similarity=0.362  Sum_probs=191.7

Q ss_pred             cccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCC
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPP  270 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~  270 (588)
                      ..+++|++.+.||+|+||.||+|.+.  ++.||||++.........              ....+.+|+.+++.+    +
T Consensus        29 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~--------------~~~~~~~E~~~l~~l----~   90 (310)
T 2wqm_A           29 NTLANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAK--------------ARADCIKEIDLLKQL----N   90 (310)
T ss_dssp             SSGGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHH--------------HHHHHHHHHHHHHTC----C
T ss_pred             ccccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHH--------------HHHHHHHHHHHHHhC----C
Confidence            45588999999999999999999985  889999999643221110              223456789999887    8


Q ss_pred             CCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCC-CcHHHHHHHh---cCCCCHHHHHHHH
Q psy4039         271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYN-TDLRNYLRER---CAQLSMHERVLLF  346 (588)
Q Consensus       271 HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~-gsL~~~L~~~---~~~l~~~~~~~i~  346 (588)
                      ||||+++++++.+..                            ..++||||+. ++|.+++...   ...+++..++.++
T Consensus        91 h~~i~~~~~~~~~~~----------------------------~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~  142 (310)
T 2wqm_A           91 HPNVIKYYASFIEDN----------------------------ELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYF  142 (310)
T ss_dssp             CTTBCCEEEEEEETT----------------------------EEEEEEECCCSCBHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred             CCCEeeEEEEEEcCC----------------------------cEEEEEecCCCCCHHHHHHHhcccccCCCHHHHHHHH
Confidence            999999999988632                            4899999994 6999999752   3469999999999


Q ss_pred             HHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCC
Q psy4039         347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP  426 (588)
Q Consensus       347 ~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~  426 (588)
                      .|++.||.|||++||+||||||+|||++.+     +.+||+|||+++........     .....||+.|+|||++.+..
T Consensus       143 ~qi~~~l~~LH~~~i~H~dl~p~NIl~~~~-----~~~kl~Dfg~~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~  212 (310)
T 2wqm_A          143 VQLCSALEHMHSRRVMHRDIKPANVFITAT-----GVVKLGDLGLGRFFSSKTTA-----AHSLVGTPYYMSPERIHENG  212 (310)
T ss_dssp             HHHHHHHHHHHHTTCCCCCCCGGGEEECTT-----SCEEECCC-----------------------CCSSCCHHHHTTCC
T ss_pred             HHHHHHHHHHhhCCeeCCCCcHHHEEEcCC-----CCEEEEeccceeeecCCCcc-----ccccCCCeeEeChHHhCCCC
Confidence            999999999999999999999999999987     79999999999765442111     12356899999999997654


Q ss_pred             CCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccc-----cccccccCCC-CCCccHHHHHHHHHhhhhCCCCCCCHH
Q psy4039         427 GLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNT-----DYEVNALPQL-NTNVPEVMRRLVAKLLENDPSDRPSAE  500 (588)
Q Consensus       427 ~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~-----~~~~~~~~~~-~~~~~~~l~~Li~~~L~~dP~~Rps~~  500 (588)
                            ++.++|||||||++|||++|..||.+.....     .......+.. +..+++++.+++.+||+.||.+|||++
T Consensus       213 ------~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~  286 (310)
T 2wqm_A          213 ------YNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQCDYPPLPSDHYSEELRQLVNMCINPDPEKRPDVT  286 (310)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHSSCTTC---CCHHHHHHHHHTTCSCCCCTTTSCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             ------CCchhhHHHHHHHHHHHHhCCCCCcccchhHHHHHHHhhcccCCCCcccccCHHHHHHHHHHcCCChhhCCCHH
Confidence                  4568999999999999999999997642211     1111122222 357899999999999999999999999


Q ss_pred             HHHHHHhhh
Q psy4039         501 LAATVCQLY  509 (588)
Q Consensus       501 e~l~~L~~~  509 (588)
                      ++++.|+.+
T Consensus       287 ~il~~l~~l  295 (310)
T 2wqm_A          287 YVYDVAKRM  295 (310)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988765

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=100.00  E-value=5.7e-41  Score=350.24  Aligned_cols=260  Identities=19%  Similarity=0.198  Sum_probs=197.6

Q ss_pred             cccCCeEEeeeecccCceeEEEEEEC---CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcC--
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFR---GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVEN--  267 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~---g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~--  267 (588)
                      +..++|++.+.||+|+||+||+|.+.   +..||||++....                  ...+.+.+|+.+++.+..  
T Consensus        16 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~------------------~~~~~~~~E~~~l~~l~~~~   77 (355)
T 2eu9_A           16 WLQERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVG------------------KYREAARLEINVLKKIKEKD   77 (355)
T ss_dssp             EETTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSCH------------------HHHHHHHHHHHHHHHHHHHC
T ss_pred             eecccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEcccc------------------cchhHHHHHHHHHHHHhhcC
Confidence            34489999999999999999999986   3789999984210                  012345568888887721  


Q ss_pred             CCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhc-CCCCHHHHHHHH
Q psy4039         268 LPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERC-AQLSMHERVLLF  346 (588)
Q Consensus       268 l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~-~~l~~~~~~~i~  346 (588)
                      ...|++++.+++++....                            ..++||||++++|.+++.... ..+++.++..++
T Consensus        78 ~~~~~~~~~~~~~~~~~~----------------------------~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~i~  129 (355)
T 2eu9_A           78 KENKFLCVLMSDWFNFHG----------------------------HMCIAFELLGKNTFEFLKENNFQPYPLPHVRHMA  129 (355)
T ss_dssp             TTSCSCBCCEEEEEEETT----------------------------EEEEEEECCCCBHHHHHHHTTTCCCCHHHHHHHH
T ss_pred             CCCceeEEEeeeeeeeCC----------------------------eEEEEEeccCCChHHHHHhccCCCCCHHHHHHHH
Confidence            113344899998887632                            499999999989988887653 469999999999


Q ss_pred             HHHHHHHHHHHhCCceeccCCCCcEEEcCCCC--------------CCCCceeeeccccccccCCCCccccccccccccC
Q psy4039         347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSED--------------NTCPQLVITDFGSSYTNKSGLSMQYSSADIELGG  412 (588)
Q Consensus       347 ~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~--------------~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~G  412 (588)
                      .||+.||.|||++||+||||||+|||++.+..              ...+.+||+|||+++......        ....|
T Consensus       130 ~qi~~~L~~lH~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~--------~~~~g  201 (355)
T 2eu9_A          130 YQLCHALRFLHENQLTHTDLKPENILFVNSEFETLYNEHKSCEEKSVKNTSIRVADFGSATFDHEHH--------TTIVA  201 (355)
T ss_dssp             HHHHHHHHHHHTTTEECCCCCGGGEEESCCCEEEEECCC-CCCEEEESCCCEEECCCTTCEETTSCC--------CSSCS
T ss_pred             HHHHHHHHHHHHCCcccCCCCHHHEEEecccccccccccccccccccCCCcEEEeecCccccccccc--------cCCcC
Confidence            99999999999999999999999999943210              111789999999997643321        14579


Q ss_pred             CccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccccc-----c-------------------
Q psy4039         413 NVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV-----N-------------------  468 (588)
Q Consensus       413 T~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~-----~-------------------  468 (588)
                      |+.|+|||++.+..      ++.++|||||||++|||++|..||...........     .                   
T Consensus       202 t~~y~aPE~~~~~~------~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  275 (355)
T 2eu9_A          202 TRHYRPPEVILELG------WAQPCDVWSIGCILFEYYRGFTLFQTHENREHLVMMEKILGPIPSHMIHRTRKQKYFYKG  275 (355)
T ss_dssp             CGGGCCHHHHTTCC------CCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHHHCSCGGGEETT
T ss_pred             CCcccCCeeeecCC------CCCccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCcHHHhhhccchhhhccc
Confidence            99999999997654      45789999999999999999999976321110000     0                   


Q ss_pred             --cc--------------------CCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccCCC
Q psy4039         469 --AL--------------------PQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGAT  521 (588)
Q Consensus       469 --~~--------------------~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~~  521 (588)
                        .+                    .......++++.+||.+||+.||++|||++++++         |||++...
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~---------hp~f~~~~  341 (355)
T 2eu9_A          276 GLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRITLAEALL---------HPFFAGLT  341 (355)
T ss_dssp             EECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTT---------SGGGGGCC
T ss_pred             ccccccccchhccccccCCcccccccccchhHHHHHHHHHHHhcCChhhCcCHHHHhc---------ChhhcCCC
Confidence              00                    0011223568999999999999999999999998         99998543

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=100.00  E-value=5.4e-41  Score=348.41  Aligned_cols=259  Identities=20%  Similarity=0.217  Sum_probs=204.8

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEE------CCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhh
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATF------RGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNS  264 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~------~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~  264 (588)
                      ..+..++|++.+.||+|+||.||+|.+      .++.||||++....   .              ...+.+.+|+.+++.
T Consensus        36 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~---~--------------~~~~~~~~E~~~l~~   98 (326)
T 2w1i_A           36 TQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHST---E--------------EHLRDFEREIEILKS   98 (326)
T ss_dssp             -CCCGGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCC---S--------------HHHHHHHHHHHHHHT
T ss_pred             cccCHHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCC---H--------------HHHHHHHHHHHHHHh
Confidence            345568899999999999999999985      28899999985321   1              012346679999988


Q ss_pred             hcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHH
Q psy4039         265 VENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERV  343 (588)
Q Consensus       265 l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~  343 (588)
                      +    +||||+++++++.+..                          ...+++||||+ +++|.+++......+++.+++
T Consensus        99 l----~h~~iv~~~~~~~~~~--------------------------~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~  148 (326)
T 2w1i_A           99 L----QHDNIVKYKGVCYSAG--------------------------RRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLL  148 (326)
T ss_dssp             C----CCTTBCCEEEEECC------------------------------CCEEEECCCTTCBHHHHHHHSTTSSCHHHHH
T ss_pred             C----CCCCeeeEEEEEEecC--------------------------CCceEEEEECCCCCCHHHHHHhcccCCCHHHHH
Confidence            7    8999999999886531                          12389999999 579999998875579999999


Q ss_pred             HHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHh
Q psy4039         344 LLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVAL  423 (588)
Q Consensus       344 ~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~  423 (588)
                      .++.|+++||.|||++||+||||||+|||++.+     +.+||+|||+++.........  .......||+.|+|||++.
T Consensus       149 ~i~~qi~~aL~~LH~~~ivH~dikp~NIli~~~-----~~~kL~Dfg~~~~~~~~~~~~--~~~~~~~~~~~y~aPE~~~  221 (326)
T 2w1i_A          149 QYTSQICKGMEYLGTKRYIHRDLATRNILVENE-----NRVKIGDFGLTKVLPQDKEYY--KVKEPGESPIFWYAPESLT  221 (326)
T ss_dssp             HHHHHHHHHHHHHHHTTEECSCCCGGGEEEEET-----TEEEECCCTTCEECCSSCSEE--ECSSCCSCCGGGCCHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCEeccCCCcceEEEcCC-----CcEEEecCcchhhcccccccc--ccccCCCCceeEECchhhc
Confidence            999999999999999999999999999999987     799999999998765432211  1112345788999999998


Q ss_pred             cCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccc-------c------------ccccccccCCCCCCccHHHHHH
Q psy4039         424 ATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSAR-------N------------TDYEVNALPQLNTNVPEVMRRL  484 (588)
Q Consensus       424 ~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~-------~------------~~~~~~~~~~~~~~~~~~l~~L  484 (588)
                      +..      ++.++|||||||++|||++|..||.....       .            .........+.+..+|+++.++
T Consensus       222 ~~~------~~~~~Di~slG~il~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  295 (326)
T 2w1i_A          222 ESK------FSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMI  295 (326)
T ss_dssp             HCE------EEHHHHHHHHHHHHHHHHHTTCGGGSHHHHHHHHHCTTCCTHHHHHHHHHHHHTTCCCCCCTTCCHHHHHH
T ss_pred             CCC------CCchhhHHHHHHHHHHHHhcCCCCCCCHHHHHHhhccccchhhhHHHHHHHhhcCCCCCCCCcccHHHHHH
Confidence            764      34679999999999999999999864210       0            0011122344567899999999


Q ss_pred             HHHhhhhCCCCCCCHHHHHHHHhhh
Q psy4039         485 VAKLLENDPSDRPSAELAATVCQLY  509 (588)
Q Consensus       485 i~~~L~~dP~~Rps~~e~l~~L~~~  509 (588)
                      |.+||+.||++|||+.++++.|+..
T Consensus       296 i~~cl~~dP~~Rps~~el~~~L~~l  320 (326)
T 2w1i_A          296 MTECWNNNVNQRPSFRDLALRVDQI  320 (326)
T ss_dssp             HHHHSCSSGGGSCCHHHHHHHHHHH
T ss_pred             HHHHcCCChhhCcCHHHHHHHHHHH
Confidence            9999999999999999999977743

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=100.00  E-value=3e-41  Score=348.05  Aligned_cols=266  Identities=18%  Similarity=0.201  Sum_probs=201.5

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCC
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENL  268 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l  268 (588)
                      ..+..++|++.+.||+|+||.||+|.+.  ++.||||++....    .             ...+.+.+|+.+++.+   
T Consensus        24 ~~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~-------------~~~~~~~~E~~~l~~l---   83 (317)
T 2buj_A           24 VIIDNKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHE----Q-------------QDREEAQREADMHRLF---   83 (317)
T ss_dssp             EEETTEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESS----H-------------HHHHHHHHHHHHHHTC---
T ss_pred             EEECCeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCC----H-------------HHHHHHHHHHHHHhhc---
Confidence            3455578999999999999999999985  8899999985321    0             0223456789999887   


Q ss_pred             CCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh---cCCCCHHHHHH
Q psy4039         269 PPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER---CAQLSMHERVL  344 (588)
Q Consensus       269 ~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~---~~~l~~~~~~~  344 (588)
                       +||||+++++++....                        ......++||||+ +|+|.+++...   ...+++.+++.
T Consensus        84 -~h~~iv~~~~~~~~~~------------------------~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~  138 (317)
T 2buj_A           84 -NHPNILRLVAYCLRER------------------------GAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILW  138 (317)
T ss_dssp             -CCTTBCCCCEEEEEEE------------------------TTEEEEEEEEECCTTCBHHHHHHHHHTTTCCCCHHHHHH
T ss_pred             -CCCCeeeEEEEEEecc------------------------CCCceeEEEEEeCCCCcHHHHHHHHHhcCCCCCHHHHHH
Confidence             9999999999987521                        1123589999999 56999999863   45799999999


Q ss_pred             HHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccc----cccccccccCCccccchh
Q psy4039         345 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQ----YSSADIELGGNVALMAPE  420 (588)
Q Consensus       345 i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~----~~~~~~~~~GT~~Y~APE  420 (588)
                      ++.||++||.|||++||+||||||+|||++.+     +.+||+|||+++.........    .........||+.|+|||
T Consensus       139 i~~qi~~~L~~LH~~~ivH~dlkp~NIl~~~~-----~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE  213 (317)
T 2buj_A          139 LLLGICRGLEAIHAKGYAHRDLKPTNILLGDE-----GQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPE  213 (317)
T ss_dssp             HHHHHHHHHHHHHHTTEECCCCCGGGEEECTT-----SCEEECCCSSCEESCEEEESHHHHHHHHHHHHHHSCGGGCCGG
T ss_pred             HHHHHHHHHHHHHhCCcccCCCCHHHEEEcCC-----CCEEEEecCcchhcccccccccccccccccccccCCcccCCHh
Confidence            99999999999999999999999999999887     789999999987643211100    000012345899999999


Q ss_pred             HHhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccc-----cccccccCCCCCCccHHHHHHHHHhhhhCCCC
Q psy4039         421 VALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNT-----DYEVNALPQLNTNVPEVMRRLVAKLLENDPSD  495 (588)
Q Consensus       421 ~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~-----~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~  495 (588)
                      ++.+....   .++.++|||||||++|||++|+.||.......     ........+.+..+++++.++|.+||+.||.+
T Consensus       214 ~~~~~~~~---~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~  290 (317)
T 2buj_A          214 LFSVQSHC---VIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQNQLSIPQSPRHSSALWQLLNSMMTVDPHQ  290 (317)
T ss_dssp             GSSCCSEE---EECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSCHHHHHHCC--CCCCTTSCHHHHHHHHHHTCSSGGG
T ss_pred             HhccCCCc---CCCchhhHHHHHHHHHHHHhCCCChhhhhcccchhhHHhhccCCCCccccCCHHHHHHHHHHhhcChhh
Confidence            98654311   13468999999999999999999996521111     01111122334578999999999999999999


Q ss_pred             CCCHHHHHHHHhhh
Q psy4039         496 RPSAELAATVCQLY  509 (588)
Q Consensus       496 Rps~~e~l~~L~~~  509 (588)
                      |||++++++.|+..
T Consensus       291 Rps~~~ll~~L~~~  304 (317)
T 2buj_A          291 RPHIPLLLSQLEAL  304 (317)
T ss_dssp             SCCHHHHHHHHHHT
T ss_pred             CCCHHHHHHHhhhc
Confidence            99999999988754

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=100.00  E-value=5.6e-41  Score=358.46  Aligned_cols=263  Identities=18%  Similarity=0.224  Sum_probs=198.9

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|.+.+.||+|+||+||+|.+.  ++.||||++......                ...+.+.+|+.+++.+    +|||
T Consensus         9 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~----------------~~~~~~~~E~~~l~~l----~hpn   68 (396)
T 4eut_A            9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFL----------------RPVDVQMREFEVLKKL----NHKN   68 (396)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGG----------------SCHHHHHHHHHHHHHC----CCTT
T ss_pred             CceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEecccccc----------------chHHHHHHHHHHHHhc----CCCC
Confidence            78999999999999999999998  889999999532211                1223456799999998    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc--CCCCHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC--AQLSMHERVLLFTQLL  350 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~--~~l~~~~~~~i~~ql~  350 (588)
                      |+++++++.+..                          ....++||||+ +|+|.+++....  ..+++..++.++.||+
T Consensus        69 Iv~~~~~~~~~~--------------------------~~~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~  122 (396)
T 4eut_A           69 IVKLFAIEEETT--------------------------TRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVV  122 (396)
T ss_dssp             BCCEEEEEECTT--------------------------TCCEEEEECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHH
T ss_pred             CCeEEEeeccCC--------------------------CCeeEEEEecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHH
Confidence            999999987632                          12489999999 579999998643  2399999999999999


Q ss_pred             HHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCc-
Q psy4039         351 EGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF-  429 (588)
Q Consensus       351 ~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~-  429 (588)
                      .||.|||++||+||||||+|||+..+.+.. +.+||+|||+++.......      .....||+.|+|||++.+..... 
T Consensus       123 ~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~-~~~kL~DFG~a~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~  195 (396)
T 4eut_A          123 GGMNHLRENGIVHRNIKPGNIMRVIGEDGQ-SVYKLTDFGAARELEDDEQ------FVSLYGTEEYLHPDMYERAVLRKD  195 (396)
T ss_dssp             HHHHHHHHTTEECCCCCGGGEEEEECTTSC-EEEEECCGGGCEECCCGGG------SSCSSSCCTTCCHHHHHHHCC--C
T ss_pred             HHHHHHHHCCEEECCcCHHHEEEeecCCCc-eeEEEecCCCceEccCCCc------cccccCCccccCHHHhhccccccc
Confidence            999999999999999999999982221111 6899999999987654221      12456999999999986521000 


Q ss_pred             -cCCCCCcCchhhHHHHHHHHhcCCCCCcccccccc---------------------------cc----ccccCCCCCCc
Q psy4039         430 -SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD---------------------------YE----VNALPQLNTNV  477 (588)
Q Consensus       430 -~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~---------------------------~~----~~~~~~~~~~~  477 (588)
                       ...++.++|||||||++|||++|+.||........                           +.    ......++..+
T Consensus       196 ~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  275 (396)
T 4eut_A          196 HQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGL  275 (396)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTCHHHHHHHHHSCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHH
T ss_pred             cccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccchHHHHHHHhcCCCcccchhheeccCCCcccCccCCcccccchHH
Confidence             00134579999999999999999999964211000                           00    00011122345


Q ss_pred             cHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhh
Q psy4039         478 PEVMRRLVAKLLENDPSDRPSAELAATVCQLYLW  511 (588)
Q Consensus       478 ~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~  511 (588)
                      ++.+.+++.+||+.||++||+++++++.+...+.
T Consensus       276 ~~~l~~ll~~~L~~dP~~R~s~~e~l~~l~~il~  309 (396)
T 4eut_A          276 QVLLTPVLANILEADQEKCWGFDQFFAETSDILH  309 (396)
T ss_dssp             HHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHHT
T ss_pred             HhhchHHHHHhhccChhhhccHHHHHHHHHHHhh
Confidence            6789999999999999999999999998877653

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=100.00  E-value=1.2e-40  Score=346.94  Aligned_cols=261  Identities=23%  Similarity=0.285  Sum_probs=199.0

Q ss_pred             CCeEEeeeecccCceeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceE
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVV  275 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV  275 (588)
                      ++|++.+.||+|+||.||+|.+.++.||||++...                    ....+.+|++++..+.  ++||||+
T Consensus        42 ~~y~~~~~lg~G~~g~Vy~~~~~~~~vavK~~~~~--------------------~~~~~~~e~~~~~~~~--l~h~ni~   99 (342)
T 1b6c_B           42 RTIVLQESIGKGRFGEVWRGKWRGEEVAVKIFSSR--------------------EERSWFREAEIYQTVM--LRHENIL   99 (342)
T ss_dssp             HHCEEEEEEEEETTEEEEEEEETTEEEEEEEECGG--------------------GHHHHHHHHHHHHHSC--CCCTTBC
T ss_pred             ccEEEEeeecCCCCcEEEEEEEcCccEEEEEeCch--------------------hHHHHHHHHHHHHHhh--cCCCcEE
Confidence            78999999999999999999999999999998421                    1123456777777631  3899999


Q ss_pred             EEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy4039         276 VMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVT  354 (588)
Q Consensus       276 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~  354 (588)
                      ++++++.+..                        .....+++||||+ +|+|.+++...  .+++.+++.++.|++.||.
T Consensus       100 ~~~~~~~~~~------------------------~~~~~~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~i~~~i~~~l~  153 (342)
T 1b6c_B          100 GFIAADNKDN------------------------GTWTQLWLVSDYHEHGSLFDYLNRY--TVTVEGMIKLALSTASGLA  153 (342)
T ss_dssp             CEEEEEECCC------------------------SSCCCEEEEECCCTTCBHHHHHHHC--CBCHHHHHHHHHHHHHHHH
T ss_pred             EEEeeecccC------------------------CccceeEEEEeecCCCcHHHHHhcc--CccHHHHHHHHHHHHHHHH
Confidence            9999987632                        1122489999999 56999999865  7999999999999999999


Q ss_pred             HHH--------hCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCC
Q psy4039         355 HLN--------MHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP  426 (588)
Q Consensus       355 yLH--------~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~  426 (588)
                      |||        +++|+||||||+|||++.+     +.+||+|||+++......... ........||+.|+|||++.+..
T Consensus       154 ~lH~~~~~~~~~~~ivH~Dlkp~NIll~~~-----~~~kL~Dfg~~~~~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~  227 (342)
T 1b6c_B          154 HLHMEIVGTQGKPAIAHRDLKSKNILVKKN-----GTCCIADLGLAVRHDSATDTI-DIAPNHRVGTKRYMAPEVLDDSI  227 (342)
T ss_dssp             HHHCCBCSTTCBCEEECSCCSGGGEEECTT-----SCEEECCCTTCEEEETTTTEE-EECCCSCCCCGGGCCHHHHTSCC
T ss_pred             HHHHHHhhhcccCCeeeCCCCHHHEEECCC-----CCEEEEECCCceecccccccc-ccccccCCcCcccCCHhhhcccc
Confidence            999        8999999999999999987     799999999998765432110 00112457999999999997653


Q ss_pred             CCccCCCCCcCchhhHHHHHHHHhcC----------CCCCccccccc---------cccccccCCCC-----CCccHHHH
Q psy4039         427 GLFSFVNYSKSDAWTAGTVAYEIFGH----------DNPFYQSARNT---------DYEVNALPQLN-----TNVPEVMR  482 (588)
Q Consensus       427 ~~~~~~~~~ksDVwS~Gvil~ElltG----------~~Pf~~~~~~~---------~~~~~~~~~~~-----~~~~~~l~  482 (588)
                      .......+.++|||||||++|||++|          ..||.......         .......+.++     ..+++.+.
T Consensus       228 ~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  307 (342)
T 1b6c_B          228 NMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMA  307 (342)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGGGGTSHHHHHHH
T ss_pred             cccccccCCcccHHHHHHHHHHHHhccCcCCcccccccCccccCcCcccHHHHHHHHHHHHhCCCCcccccchhHHHHHH
Confidence            21100122579999999999999999          77886532111         00111122222     23456899


Q ss_pred             HHHHHhhhhCCCCCCCHHHHHHHHhhhh
Q psy4039         483 RLVAKLLENDPSDRPSAELAATVCQLYL  510 (588)
Q Consensus       483 ~Li~~~L~~dP~~Rps~~e~l~~L~~~~  510 (588)
                      +|+.+||+.||++|||++++++.|+...
T Consensus       308 ~li~~cl~~dp~~Rps~~~i~~~L~~i~  335 (342)
T 1b6c_B          308 KIMRECWYANGAARLTALRIKKTLSQLS  335 (342)
T ss_dssp             HHHHHHCCSSGGGSCCHHHHHHHHHHHH
T ss_pred             HHHHHHhccChhhCCCHHHHHHHHHHHH
Confidence            9999999999999999999999887543

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=100.00  E-value=6.5e-41  Score=362.45  Aligned_cols=262  Identities=23%  Similarity=0.327  Sum_probs=187.1

Q ss_pred             CCeEEeeeecccCceeEEE-EEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCce
Q psy4039         196 DDIQIGKFIAKGTNAVVYE-ATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNV  274 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~-a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNI  274 (588)
                      +.|...+.||+|+||+||. +...|+.||||++...                    ....+.+|+.+++.+   .+||||
T Consensus        15 ~~~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~--------------------~~~~~~~E~~~l~~l---~~HpnI   71 (434)
T 2rio_A           15 NLVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLID--------------------FCDIALMEIKLLTES---DDHPNV   71 (434)
T ss_dssp             SCEEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGG--------------------GHHHHHHHHHHHHHH---TTSTTB
T ss_pred             heeeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHH--------------------HHHHHHHHHHHHHhc---cCCCCc
Confidence            4566678999999999964 4445899999998421                    112345688988876   589999


Q ss_pred             EEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCC------CCHHHHHHHHHH
Q psy4039         275 VVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQ------LSMHERVLLFTQ  348 (588)
Q Consensus       275 V~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~------l~~~~~~~i~~q  348 (588)
                      |++++++.+..                            .+|+||||++|+|.+++......      .++..++.++.|
T Consensus        72 v~~~~~~~~~~----------------------------~~~lv~E~~~gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~q  123 (434)
T 2rio_A           72 IRYYCSETTDR----------------------------FLYIALELCNLNLQDLVESKNVSDENLKLQKEYNPISLLRQ  123 (434)
T ss_dssp             CCEEEEEECSS----------------------------EEEEEECCCSEEHHHHHHTC------------CCHHHHHHH
T ss_pred             CeEEEEEecCC----------------------------eEEEEEecCCCCHHHHHhccCCCchhhhhccchhHHHHHHH
Confidence            99999887632                            49999999999999999864211      133456789999


Q ss_pred             HHHHHHHHHhCCceeccCCCCcEEEcCCC--------CCCCCceeeeccccccccCCCCccccccccccccCCccccchh
Q psy4039         349 LLEGVTHLNMHRTAHRDLKSDNILLDCSE--------DNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPE  420 (588)
Q Consensus       349 l~~gL~yLH~~~IvHrDLKp~NILld~~~--------~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE  420 (588)
                      |+.||.|||++||+||||||+|||++.+.        .+....+||+|||+|+....+... ........+||+.|+|||
T Consensus       124 i~~aL~~LH~~~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~kL~DFG~a~~~~~~~~~-~~~~~~~~~gt~~y~aPE  202 (434)
T 2rio_A          124 IASGVAHLHSLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDSGQSS-FRTNLNNPSGTSGWRAPE  202 (434)
T ss_dssp             HHHHHHHHHHTTEECCCCSGGGEEEECCHHHHSCCTTCCCSCEEEECCCTTCEECCC---------------CCTTSCHH
T ss_pred             HHHHHHHHHHCCccccCCChHhEEEecCcccccccccCCCceEEEEcccccceecCCCCcc-ceeeecCCCCCCCccCHH
Confidence            99999999999999999999999997541        011258999999999886553221 111122467999999999


Q ss_pred             HHhcCCCC-ccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc------ccccccCC-CCCCccHHHHHHHHHhhhh
Q psy4039         421 VALATPGL-FSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD------YEVNALPQ-LNTNVPEVMRRLVAKLLEN  491 (588)
Q Consensus       421 ~l~~~~~~-~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~------~~~~~~~~-~~~~~~~~l~~Li~~~L~~  491 (588)
                      ++.+.... ....++.++|||||||++|||++ |..||........      ......+. .+..+++++.+||.+||+.
T Consensus       203 ~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~  282 (434)
T 2rio_A          203 LLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYSRESNIIRGIFSLDEMKCLHDRSLIAEATDLISQMIDH  282 (434)
T ss_dssp             HHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTTHHHHHHHTCCCCCCCTTCCCHHHHHHHHHHHHHHTCS
T ss_pred             HhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchhhHHHHhcCCCCcccccccccccchHHHHHHHHHHhhC
Confidence            99763210 11125678999999999999999 9999976422111      11111111 1224578899999999999


Q ss_pred             CCCCCCCHHHHHHHHhhhhhcCCcccc
Q psy4039         492 DPSDRPSAELAATVCQLYLWAPKHWLY  518 (588)
Q Consensus       492 dP~~Rps~~e~l~~L~~~~~~~h~w~~  518 (588)
                      ||.+|||+.++++         |||+.
T Consensus       283 dP~~Rps~~eil~---------hp~f~  300 (434)
T 2rio_A          283 DPLKRPTAMKVLR---------HPLFW  300 (434)
T ss_dssp             SGGGSCCHHHHHT---------SGGGS
T ss_pred             ChhhCCCHHHHHh---------CCccC
Confidence            9999999999998         99995

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=100.00  E-value=3.2e-40  Score=361.40  Aligned_cols=255  Identities=18%  Similarity=0.220  Sum_probs=200.6

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      .++|++.+.||+|+||.||+|.+.  ++.||||++....                   ....+.+|+.+++.+   ..|+
T Consensus         6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~-------------------~~~~~~~E~~il~~L---~~~~   63 (483)
T 3sv0_A            6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKT-------------------KHPQLLYESKIYRIL---QGGT   63 (483)
T ss_dssp             TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTC-------------------SSCCHHHHHHHHHHT---TTST
T ss_pred             CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEecccc-------------------ccHHHHHHHHHHHHh---cCCC
Confidence            388999999999999999999986  8899999985321                   233466799999887   2345


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      +|..+..++.+.                            ...++||||++++|.+++......+++.+++.|+.||+.|
T Consensus        64 ~i~~i~~~~~~~----------------------------~~~~lvme~~g~sL~~ll~~~~~~l~~~~~~~i~~qi~~a  115 (483)
T 3sv0_A           64 GIPNVRWFGVEG----------------------------DYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINR  115 (483)
T ss_dssp             TCCCEEEEEEET----------------------------TEEEEEEECCCCBHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeeC----------------------------CEEEEEEECCCCCHHHHHHhhcCCCCHHHHHHHHHHHHHH
Confidence            555555544432                            2489999999999999998766689999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEc---CCCCCCCCceeeeccccccccCCCCcccc--ccccccccCCccccchhHHhcCCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLD---CSEDNTCPQLVITDFGSSYTNKSGLSMQY--SSADIELGGNVALMAPEVALATPG  427 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld---~~~~~~~~~vkL~DFGla~~~~~~~~~~~--~~~~~~~~GT~~Y~APE~l~~~~~  427 (588)
                      |.|||++||+||||||+||||+   .+     +.+||+|||+|+..........  ........||+.|+|||++.+.. 
T Consensus       116 L~yLH~~gIvHrDIKP~NILl~~~~~~-----~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~-  189 (483)
T 3sv0_A          116 VEFVHSKSFLHRDIKPDNFLMGLGRRA-----NQVYIIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASVNTHLGIE-  189 (483)
T ss_dssp             HHHHHHTTEECCCCCGGGEEECCGGGT-----TCEEECCCTTCEECBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCC-
T ss_pred             HHHHHHCCEeecccCcceEEEecCCCC-----CeEEEEeCCcceeccCCccccccccccccccCCCccccCHHHhcCCC-
Confidence            9999999999999999999994   44     7899999999987655322110  11122567999999999998765 


Q ss_pred             CccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccc---cc-------ccccCCCCCCccHHHHHHHHHhhhhCCCCCC
Q psy4039         428 LFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD---YE-------VNALPQLNTNVPEVMRRLVAKLLENDPSDRP  497 (588)
Q Consensus       428 ~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~---~~-------~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rp  497 (588)
                           ++.++|||||||++|||++|+.||.+......   +.       ......++..+|+++.++|..||+.||++||
T Consensus       190 -----~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~p~~l~~li~~cl~~dP~~RP  264 (483)
T 3sv0_A          190 -----QSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVATSIEALCRGYPTEFASYFHYCRSLRFDDKP  264 (483)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHHHHHHHHHHHHHHSCHHHHHTTSCHHHHHHHHHHHTCCTTCCC
T ss_pred             -----CChHHHHHHHHHHHHHHHhCCCCCccccchhHHHHHHHHhhccccccHHHHhcCCcHHHHHHHHHHhcCChhhCc
Confidence                 45789999999999999999999976322110   00       0111123357899999999999999999999


Q ss_pred             CHHHHHHHHhhhh
Q psy4039         498 SAELAATVCQLYL  510 (588)
Q Consensus       498 s~~e~l~~L~~~~  510 (588)
                      +++++++.|+..+
T Consensus       265 s~~el~~~L~~l~  277 (483)
T 3sv0_A          265 DYSYLKRLFRDLF  277 (483)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            9999999888664

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=100.00  E-value=1.9e-40  Score=376.38  Aligned_cols=256  Identities=24%  Similarity=0.315  Sum_probs=204.7

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEEC-----CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhh
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATFR-----GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSV  265 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-----g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l  265 (588)
                      .++..++|++++.||+|+||.||+|.+.     +..||||.+....   . .            ...+.+.+|+.+++.+
T Consensus       385 ~~i~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~---~-~------------~~~~~~~~E~~~l~~l  448 (656)
T 2j0j_A          385 YEIQRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCT---S-D------------SVREKFLQEALTMRQF  448 (656)
T ss_dssp             TBCCGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTT---C-H------------HHHHHHHHHHHHHHHC
T ss_pred             cccccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccC---C-H------------HHHHHHHHHHHHHHhC
Confidence            4566678999999999999999999985     4579999984311   1 0            0224566799999987


Q ss_pred             cCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHH
Q psy4039         266 ENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVL  344 (588)
Q Consensus       266 ~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~  344 (588)
                          +|||||++++++.+.                             ..++||||+ +|+|.+++......+++..++.
T Consensus       449 ----~HpnIv~l~~~~~~~-----------------------------~~~lv~E~~~~g~L~~~l~~~~~~l~~~~~~~  495 (656)
T 2j0j_A          449 ----DHPHIVKLIGVITEN-----------------------------PVWIIMELCTLGELRSFLQVRKFSLDLASLIL  495 (656)
T ss_dssp             ----CCTTBCCEEEEECSS-----------------------------SCEEEEECCTTCBHHHHHHHTTTTCCHHHHHH
T ss_pred             ----CCCCCCeEEEEEecC-----------------------------ceEEEEEcCCCCcHHHHHHhccCCCCHHHHHH
Confidence                999999999998542                             278999999 5899999987766799999999


Q ss_pred             HHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhc
Q psy4039         345 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALA  424 (588)
Q Consensus       345 i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~  424 (588)
                      ++.|++.||.|||++||+||||||+|||++.+     +.+||+|||+++.........    .....||+.|+|||++.+
T Consensus       496 i~~qi~~aL~~LH~~givHrDikp~NILl~~~-----~~vkL~DFG~a~~~~~~~~~~----~~~~~~t~~y~aPE~~~~  566 (656)
T 2j0j_A          496 YAYQLSTALAYLESKRFVHRDIAARNVLVSSN-----DCVKLGDFGLSRYMEDSTYYK----ASKGKLPIKWMAPESINF  566 (656)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCSGGGEEEEET-----TEEEECCCCCCCSCCC--------------CCGGGCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCccccccchHhEEEeCC-----CCEEEEecCCCeecCCCccee----ccCCCCCcceeCHHHhcC
Confidence            99999999999999999999999999999988     899999999998765432111    123457889999999987


Q ss_pred             CCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHH
Q psy4039         425 TPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE  500 (588)
Q Consensus       425 ~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~  500 (588)
                      ..      ++.++|||||||++|||++ |..||.+......   ......+..+..+|+++.++|.+||+.||.+|||++
T Consensus       567 ~~------~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~dP~~RPs~~  640 (656)
T 2j0j_A          567 RR------FTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFT  640 (656)
T ss_dssp             CC------CCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             CC------CCchhhHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHcCCCCCCCccccHHHHHHHHHHcCCChhHCcCHH
Confidence            65      4568999999999999997 9999976432211   122334456778999999999999999999999999


Q ss_pred             HHHHHHhhhh
Q psy4039         501 LAATVCQLYL  510 (588)
Q Consensus       501 e~l~~L~~~~  510 (588)
                      ++++.|+..+
T Consensus       641 el~~~L~~il  650 (656)
T 2j0j_A          641 ELKAQLSTIL  650 (656)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999887543

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=100.00  E-value=3.5e-40  Score=354.44  Aligned_cols=272  Identities=17%  Similarity=0.146  Sum_probs=189.8

Q ss_pred             cccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCC
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPP  270 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~  270 (588)
                      ....+|..++.||+|+||+||+|.+.  |+.||||++........              ...+.+.+|+.+++.+    +
T Consensus        75 ~~~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~--------------~~~~~~~~E~~~~~~l----~  136 (413)
T 3dzo_A           75 ERPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPS--------------NAIKQMKEEVLRLRLL----R  136 (413)
T ss_dssp             SCCEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC------------------CCHHHHHHHHGGGGS----T
T ss_pred             CCceeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccH--------------HHHHHHHHHHHHHHhh----c
Confidence            34467999999999999999999987  89999999853221111              1234456677777765    4


Q ss_pred             C-CceEEEe---------eeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHh------c
Q psy4039         271 H-PNVVVMH---------FAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRER------C  334 (588)
Q Consensus       271 H-pNIV~l~---------~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~------~  334 (588)
                      | +|...+.         +.......  +.   ++      .....+........+++|+++.++|.+++...      .
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~------~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~l~~~~~~~  205 (413)
T 3dzo_A          137 GIKNQKQAKVHLRFIFPFDLVKDPQK--KK---MI------RVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTH  205 (413)
T ss_dssp             TCCSHHHHHHHTCBCCCCEEEECCC--------------------------CCSEEEEEECCSEEHHHHHHHHHHHTTTS
T ss_pred             cCCCHHHHHHhcccccchhhcccCCC--Cc---cc------cccCCCccccccceEEEeehhcCCHHHHHHHhhcccccC
Confidence            4 2221111         11111000  00   00      00000000112248899999999999998521      3


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCc
Q psy4039         335 AQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNV  414 (588)
Q Consensus       335 ~~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~  414 (588)
                      ..+++..++.++.||++||.|||++||+||||||+|||++.+     +.+||+|||+++.....        ....+| +
T Consensus       206 ~~l~~~~~~~i~~qi~~aL~~LH~~~iiHrDiKp~NILl~~~-----~~~kL~DFG~a~~~~~~--------~~~~~g-~  271 (413)
T 3dzo_A          206 KSLVHHARLQLTLQVIRLLASLHHYGLVHTYLRPVDIVLDQR-----GGVFLTGFEHLVRDGAS--------AVSPIG-R  271 (413)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTT-----CCEEECCGGGCEETTEE--------ECCCCC-T
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcccceEEEecC-----CeEEEEeccceeecCCc--------cccCCC-C
Confidence            357888999999999999999999999999999999999988     78999999998765432        124567 9


Q ss_pred             cccchhHHhcCCCC----ccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccccccccCCCCCCccHHHHHHHHHhhh
Q psy4039         415 ALMAPEVALATPGL----FSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLE  490 (588)
Q Consensus       415 ~Y~APE~l~~~~~~----~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~l~~Li~~~L~  490 (588)
                      .|+|||++.+....    ....++.++|||||||++|||++|+.||.............  .....+|+++++||.+||+
T Consensus       272 ~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~elltg~~Pf~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~  349 (413)
T 3dzo_A          272 GFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCADLPNTDDAALGGSEWIF--RSCKNIPQPVRALLEGFLR  349 (413)
T ss_dssp             TTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHHHHHHSSCCCCTTGGGSCSGGGG--SSCCCCCHHHHHHHHHHTC
T ss_pred             ceeCchhhhccccccccccCcCCCchhhHHHHHHHHHHHHHCCCCCCCcchhhhHHHHH--hhcccCCHHHHHHHHHHcc
Confidence            99999999532100    01114468999999999999999999998754433322221  1234689999999999999


Q ss_pred             hCCCCCCCHHHHHHHHhhhhhcCCcccc
Q psy4039         491 NDPSDRPSAELAATVCQLYLWAPKHWLY  518 (588)
Q Consensus       491 ~dP~~Rps~~e~l~~L~~~~~~~h~w~~  518 (588)
                      .||++||++.++++         |||++
T Consensus       350 ~dP~~Rpt~~~~l~---------~~~~~  368 (413)
T 3dzo_A          350 YPKEDRLLPLQAME---------TPEYE  368 (413)
T ss_dssp             SSGGGSCCHHHHTT---------SHHHH
T ss_pred             CChhhCcCHHHHHh---------CHHHH
Confidence            99999999999988         99985

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=100.00  E-value=1.8e-38  Score=325.33  Aligned_cols=234  Identities=21%  Similarity=0.353  Sum_probs=182.9

Q ss_pred             ccccCCeEEe-eeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCC
Q psy4039         192 DVKVDDIQIG-KFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENL  268 (588)
Q Consensus       192 ~i~~~~~~~~-~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l  268 (588)
                      ...+++|.+. +.||+|+||.||+|.+.  ++.||||++..                      .....+|+.++.++   
T Consensus        13 ~~~~~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~----------------------~~~~~~e~~~~~~~---   67 (299)
T 3m2w_A           13 NAIIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD----------------------CPKARREVELHWRA---   67 (299)
T ss_dssp             SCGGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC----------------------SHHHHHHHHHHHHH---
T ss_pred             cccccchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEecc----------------------cHHHHHHHHHHHHh---
Confidence            3345788887 78999999999999986  78999999842                      22345688877555   


Q ss_pred             CCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc-CCCCHHHHHHHH
Q psy4039         269 PPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC-AQLSMHERVLLF  346 (588)
Q Consensus       269 ~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~-~~l~~~~~~~i~  346 (588)
                      .+||||+++++++.+..                        .....+++||||+ +|+|.+++.... ..+++.+++.++
T Consensus        68 ~~h~~i~~~~~~~~~~~------------------------~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~  123 (299)
T 3m2w_A           68 SQCPHIVRIVDVYENLY------------------------AGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIM  123 (299)
T ss_dssp             TTSTTBCCEEEEEEEEE------------------------TTEEEEEEEECCCCSCBHHHHHHHCTTCCCBHHHHHHHH
T ss_pred             ccCCCchhHHhhhhhhc------------------------CCCceEEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHH
Confidence            59999999999987621                        1233589999999 579999998753 369999999999


Q ss_pred             HHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCC
Q psy4039         347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP  426 (588)
Q Consensus       347 ~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~  426 (588)
                      .||+.||.|||++||+||||||+|||++.+..+  +.+||+|||++.....                           ..
T Consensus       124 ~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~--~~~kl~Dfg~a~~~~~---------------------------~~  174 (299)
T 3m2w_A          124 KSIGEAIQYLHSINIAHRDVKPENLLYTSKRPN--AILKLTDFGFAKETTG---------------------------EK  174 (299)
T ss_dssp             HHHHHHHHHHHHTTEECCCCSGGGEEESSSSTT--CCEEECCCTTCEECTT---------------------------CG
T ss_pred             HHHHHHHHHHHhCCcccCCCCHHHEEEecCCCC--CcEEEecccccccccc---------------------------cc
Confidence            999999999999999999999999999973211  6899999999865321                           00


Q ss_pred             CCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccc----c--ccccCCCC----CCccHHHHHHHHHhhhhCCCCC
Q psy4039         427 GLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY----E--VNALPQLN----TNVPEVMRRLVAKLLENDPSDR  496 (588)
Q Consensus       427 ~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~----~--~~~~~~~~----~~~~~~l~~Li~~~L~~dP~~R  496 (588)
                            ++.++|||||||++|||++|+.||.+.......    .  .......+    ..+++++.++|.+||+.||.+|
T Consensus       175 ------~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R  248 (299)
T 3m2w_A          175 ------YDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQR  248 (299)
T ss_dssp             ------GGGHHHHHHHHHHHHHHHHSSCSCCC-------CCSCCSSCTTCCSSCHHHHTTSCHHHHHHHHHHTCSSTTTS
T ss_pred             ------CCchhhHHHHHHHHHHHHHCCCCCCCCcchhhhHHHHHHHhhccccCCchhcccCCHHHHHHHHHHcccChhhC
Confidence                  235799999999999999999999764221110    0  01111122    4688999999999999999999


Q ss_pred             CCHHHHHHHHhhhhhcCCcccc
Q psy4039         497 PSAELAATVCQLYLWAPKHWLY  518 (588)
Q Consensus       497 ps~~e~l~~L~~~~~~~h~w~~  518 (588)
                      ||++++++         |||++
T Consensus       249 ps~~e~l~---------hp~~~  261 (299)
T 3m2w_A          249 MTITEFMN---------HPWIM  261 (299)
T ss_dssp             CCHHHHHT---------SHHHH
T ss_pred             CCHHHHhc---------Chhhc
Confidence            99999999         99997

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=100.00  E-value=1.1e-40  Score=347.49  Aligned_cols=284  Identities=13%  Similarity=0.088  Sum_probs=189.2

Q ss_pred             cccCCeEEeeeecccCceeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCC----
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENL----  268 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l----  268 (588)
                      +..++|++.+.||+|+||+||+|++.++.||||++.........         .......+.+.+|+.+++.+..+    
T Consensus        17 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~vAvK~~~~~~~~~~~---------~~~~~~~~~~~~E~~~l~~l~~l~~~~   87 (336)
T 2vuw_A           17 LPTEKLQRCEKIGEGVFGEVFQTIADHTPVAIKIIAIEGPDLVN---------GSHQKTFEEILPEIIISKELSLLSGEV   87 (336)
T ss_dssp             SCHHHHHTCEEEEEETTEEEEEEEETTEEEEEEEEEESCSSCBT---------TBCCBCHHHHHHHHHHHHHHHHGGGCS
T ss_pred             cccccchheeeecccCceEEEEEEeCCceEEEEEEecCCccccc---------cccchhHHHHHHHHHHHHHHHHhhccc
Confidence            44588999999999999999999999999999999754321100         00111224566788888877311    


Q ss_pred             -CCCCceEEEeeeeeccCCCCCCCCCcCC--CCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHH
Q psy4039         269 -PPHPNVVVMHFAFTDFVPSIPDSSLIYP--SALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVL  344 (588)
Q Consensus       269 -~~HpNIV~l~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~  344 (588)
                       ..|||||++.+++......-+.--.+|.  .......+..........+|+||||+ +|++.+.+..  ..+++.++..
T Consensus        88 ~~~h~niv~l~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~--~~~~~~~~~~  165 (336)
T 2vuw_A           88 CNRTEGFIGLNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT--KLSSLATAKS  165 (336)
T ss_dssp             SSBCCCBCCEEEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT--TCCCHHHHHH
T ss_pred             cccCCchhhhcceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh--cCCCHHHHHH
Confidence             1377776666654321000000000000  00000000000011133599999999 5655555543  3789999999


Q ss_pred             HHHHHHHHHHHHH-hCCceeccCCCCcEEEcCCCCC---------------CCCceeeeccccccccCCCCccccccccc
Q psy4039         345 LFTQLLEGVTHLN-MHRTAHRDLKSDNILLDCSEDN---------------TCPQLVITDFGSSYTNKSGLSMQYSSADI  408 (588)
Q Consensus       345 i~~ql~~gL~yLH-~~~IvHrDLKp~NILld~~~~~---------------~~~~vkL~DFGla~~~~~~~~~~~~~~~~  408 (588)
                      ++.||+.||.||| ++||+||||||+|||++.+...               ....+||+|||+|+....+          
T Consensus       166 i~~qi~~aL~~lH~~~~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~----------  235 (336)
T 2vuw_A          166 ILHQLTASLAVAEASLRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDG----------  235 (336)
T ss_dssp             HHHHHHHHHHHHHHHHCCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETT----------
T ss_pred             HHHHHHHHHHHHHHhCCEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCC----------
Confidence            9999999999999 9999999999999999987210               0028999999999875432          


Q ss_pred             cccCCccccchhHHhcCCCCccCCCCCcCchhhHHHH-HHHHhcCCCCCcccc-----ccc-----cccccccCCCCCCc
Q psy4039         409 ELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTV-AYEIFGHDNPFYQSA-----RNT-----DYEVNALPQLNTNV  477 (588)
Q Consensus       409 ~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvi-l~ElltG~~Pf~~~~-----~~~-----~~~~~~~~~~~~~~  477 (588)
                      ..+||+.|||||++.+..       +.++||||+|++ .+++++|..||.+..     ...     ..........+..+
T Consensus       236 ~~~gt~~y~aPE~~~g~~-------~~~~Diwsl~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (336)
T 2vuw_A          236 IVVFCDVSMDEDLFTGDG-------DYQFDIYRLMKKENNNRWGEYHPYSNVLWLHYLTDKMLKQMTFKTKCNTPAMKQI  308 (336)
T ss_dssp             EEECCCCTTCSGGGCCCS-------SHHHHHHHHHHHHHTTCTTSCCTHHHHHHHHHHHHHHHHTCCCSSCCCSHHHHHH
T ss_pred             cEEEeecccChhhhcCCC-------ccceehhhhhCCCCcccccccCCCcchhhhhHHHHhhhhhhccCcccchhhhhhc
Confidence            347999999999997653       357999998777 888999999996521     000     11111111123357


Q ss_pred             cHHHHHHHHHhhhhCCCCCCCHHHHH-HHHhhhhhcCCcccc
Q psy4039         478 PEVMRRLVAKLLENDPSDRPSAELAA-TVCQLYLWAPKHWLY  518 (588)
Q Consensus       478 ~~~l~~Li~~~L~~dP~~Rps~~e~l-~~L~~~~~~~h~w~~  518 (588)
                      ++++++||.+||+.|     |++|++ +         ||||+
T Consensus       309 s~~~~dli~~~L~~d-----sa~e~l~~---------Hp~f~  336 (336)
T 2vuw_A          309 KRKIQEFHRTMLNFS-----SATDLLCQ---------HSLFK  336 (336)
T ss_dssp             HHHHHHHHHHGGGSS-----SHHHHHHH---------CGGGC
T ss_pred             CHHHHHHHHHHhccC-----CHHHHHhc---------CCCcC
Confidence            889999999999977     999999 8         99984

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=100.00  E-value=1.2e-39  Score=366.42  Aligned_cols=260  Identities=20%  Similarity=0.220  Sum_probs=196.0

Q ss_pred             ccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCC
Q psy4039         194 KVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPH  271 (588)
Q Consensus       194 ~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~H  271 (588)
                      ..++|++.+.||+|+||.||+|.+.  |+.||||++....   ..             ...+.+.+|+.+++.+    +|
T Consensus        12 ~~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~---~~-------------~~~~~~~~Ei~iL~~L----~H   71 (676)
T 3qa8_A           12 TCGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQEL---SP-------------KNRERWCLEIQIMKKL----NH   71 (676)
T ss_dssp             -----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCC---CH-------------HHHHHHHHHHHHHHHC----CB
T ss_pred             CCCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccC---CH-------------HHHHHHHHHHHHHHhC----CC
Confidence            3488999999999999999999986  8899999985321   10             1234466799999998    89


Q ss_pred             CceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc--CCCCHHHHHHHHHH
Q psy4039         272 PNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC--AQLSMHERVLLFTQ  348 (588)
Q Consensus       272 pNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~--~~l~~~~~~~i~~q  348 (588)
                      |||+++++++.+..                      ....+...++||||+ +|+|.+++....  ..+++..++.++.|
T Consensus        72 pnIV~l~~v~~~~~----------------------~~~~~~~~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~Q  129 (676)
T 3qa8_A           72 PNVVSAREVPDGLQ----------------------KLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSD  129 (676)
T ss_dssp             TTBCCEEECCTTTC----------------------CCCTTSSCCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHH
T ss_pred             CCCCceeeeecccc----------------------cccCCCeEEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHH
Confidence            99999999876522                      112233589999999 689999998643  25899999999999


Q ss_pred             HHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCC
Q psy4039         349 LLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGL  428 (588)
Q Consensus       349 l~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~  428 (588)
                      ++.||.|||++||+||||||+|||++.+..  ...+||+|||+++........      ....||+.|+|||++.+..  
T Consensus       130 Ll~aL~yLHs~gIVHrDLKP~NILl~~~g~--~~~vKL~DFG~a~~~~~~~~~------~~~~gt~~Y~APE~l~~~~--  199 (676)
T 3qa8_A          130 ISSALRYLHENRIIHRDLKPENIVLQPGPQ--RLIHKIIDLGYAKELDQGELC------TEFVGTLQYLAPELLEQKK--  199 (676)
T ss_dssp             HHHHHHHHHHTTBCCCCCCSTTEEEECCSS--SCEEEECSCCCCCBTTSCCCC------CCCCSCCTTCSSCSSCCSC--
T ss_pred             HHHHHHHHHHCCCccCCCCHHHeEeecCCC--ceeEEEccccccccccccccc------ccccCCcccCChHHhccCC--
Confidence            999999999999999999999999987621  145899999999876543211      2467999999999987654  


Q ss_pred             ccCCCCCcCchhhHHHHHHHHhcCCCCCccccc----------------------cccccccc----cCCCCCCccHHHH
Q psy4039         429 FSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSAR----------------------NTDYEVNA----LPQLNTNVPEVMR  482 (588)
Q Consensus       429 ~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~----------------------~~~~~~~~----~~~~~~~~~~~l~  482 (588)
                          ++.++|||||||++|||++|..||.....                      ........    ...++..+++.+.
T Consensus       200 ----~s~ksDIwSLGviLyeLltG~~Pf~~~~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~~lp~p~~l~~~ls~~L~  275 (676)
T 3qa8_A          200 ----YTVTVDYWSFGTLAFECITGFRPFLPNWQPVQWHGKVREKSNEHIVVYDDLTGAVKFSSVLPTPNHLSGILAGKLE  275 (676)
T ss_dssp             ----CSTTHHHHHHHHHHHHHHSSCSSCCSSCHHHHSSTTCC------CCSCCCCSSSCCCCSSSCCSCCCCGGGHHHHH
T ss_pred             ----CCchhHHHHHHHHHHHHHHCCCCCCcccchhhhhhhhhcccchhhhhhhhhccccccccccCCchhhchhhhHHHH
Confidence                45789999999999999999999965200                      00000000    1122345788999


Q ss_pred             HHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCcccc
Q psy4039         483 RLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLY  518 (588)
Q Consensus       483 ~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~  518 (588)
                      ++|.+||..||++|||++++++         |||++
T Consensus       276 dLI~~mL~~DP~kRPTa~elL~---------hp~F~  302 (676)
T 3qa8_A          276 RWLQCMLMWHQRQRGTDPQNPN---------VGCFQ  302 (676)
T ss_dssp             HHHHHHSCSSCC---CCTTCCC---------CTTHH
T ss_pred             HHHHHHccCCHhhCcCHHHHhc---------CHHHH
Confidence            9999999999999999999887         99975

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=100.00  E-value=5.4e-38  Score=358.19  Aligned_cols=245  Identities=20%  Similarity=0.216  Sum_probs=187.5

Q ss_pred             cccCCeEEeeeecccCceeEEEEEEC---CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCC
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFR---GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLP  269 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~---g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~  269 (588)
                      +..++|++.+.||+|+||+||+|.+.   ++.||||++....   +. .            ....+.+|+.+++.+    
T Consensus        77 ~~~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~---~~-~------------~~~~~~~E~~~l~~l----  136 (681)
T 2pzi_A           77 IVAGQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSG---DA-E------------AQAMAMAERQFLAEV----  136 (681)
T ss_dssp             EETTTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSC---CH-H------------HHHHHHHHHGGGGGC----
T ss_pred             EeCCceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccC---CH-H------------HHHHHHHHHHHHHhc----
Confidence            33488999999999999999999985   7899999985321   11 0            123456788899887    


Q ss_pred             CCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHH
Q psy4039         270 PHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQ  348 (588)
Q Consensus       270 ~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~q  348 (588)
                      +|||||++++++.+..                       .......|+||||+ +++|.+++..   .+++.+++.++.|
T Consensus       137 ~hp~iv~~~~~~~~~~-----------------------~~~~~~~~lv~E~~~g~~L~~~~~~---~l~~~~~~~~~~q  190 (681)
T 2pzi_A          137 VHPSIVQIFNFVEHTD-----------------------RHGDPVGYIVMEYVGGQSLKRSKGQ---KLPVAEAIAYLLE  190 (681)
T ss_dssp             CCTTBCCEEEEEEEEC-----------------------TTSCEEEEEEEECCCCEECC----C---CCCHHHHHHHHHH
T ss_pred             CCCCcCeEeeeEeecC-----------------------CCCCceeEEEEEeCCCCcHHHHHhC---CCCHHHHHHHHHH
Confidence            8999999999998742                       11122379999999 5799887654   7999999999999


Q ss_pred             HHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCC
Q psy4039         349 LLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGL  428 (588)
Q Consensus       349 l~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~  428 (588)
                      |+.||.|||++||+||||||+|||++.+      .+||+|||+++.....         ....||+.|+|||++.+..  
T Consensus       191 i~~aL~~lH~~giiHrDlkp~NIll~~~------~~kl~DFG~a~~~~~~---------~~~~gt~~y~aPE~~~~~~--  253 (681)
T 2pzi_A          191 ILPALSYLHSIGLVYNDLKPENIMLTEE------QLKLIDLGAVSRINSF---------GYLYGTPGFQAPEIVRTGP--  253 (681)
T ss_dssp             HHHHHHHHHHTTEECCCCSGGGEEECSS------CEEECCCTTCEETTCC---------SCCCCCTTTSCTTHHHHCS--
T ss_pred             HHHHHHHHHHCCCeecccChHHeEEeCC------cEEEEecccchhcccC---------CccCCCccccCHHHHcCCC--
Confidence            9999999999999999999999999864      7899999999875432         1457999999999997653  


Q ss_pred             ccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCH-HHHHHHHh
Q psy4039         429 FSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSA-ELAATVCQ  507 (588)
Q Consensus       429 ~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~-~e~l~~L~  507 (588)
                           +.++|||||||++|||++|.+||.+........    ......+++.+.++|.+||+.||.+||+. +++...+.
T Consensus       254 -----~~~sDi~slG~~l~~l~~g~~~~~~~~~~~~~~----~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~  324 (681)
T 2pzi_A          254 -----TVATDIYTVGRTLAALTLDLPTRNGRYVDGLPE----DDPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLT  324 (681)
T ss_dssp             -----CHHHHHHHHHHHHHHHHSCCCEETTEECSSCCT----TCHHHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHH
T ss_pred             -----CCceehhhhHHHHHHHHhCCCCCcccccccccc----cccccccCHHHHHHHhhhccCChhhCCCHHHHHHHHHH
Confidence                 367999999999999999999987643221110    00011245789999999999999999964 44444444


Q ss_pred             hh
Q psy4039         508 LY  509 (588)
Q Consensus       508 ~~  509 (588)
                      ..
T Consensus       325 ~~  326 (681)
T 2pzi_A          325 GV  326 (681)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=100.00  E-value=5.3e-37  Score=313.45  Aligned_cols=225  Identities=11%  Similarity=0.081  Sum_probs=178.5

Q ss_pred             cccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCC
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPP  270 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~  270 (588)
                      +..++|++.+.||+|+||.||+|.+.  ++.||||++.......  ..            ..+.+.+|+.++..+    +
T Consensus        28 ~~~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~--~~------------~~~~~~~e~~~l~~l----~   89 (286)
T 3uqc_A           28 IANGRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLP--DD------------VLQETLSRTLRLSRI----D   89 (286)
T ss_dssp             ETTTTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSC--HH------------HHHHHHHHHHHHHTC----C
T ss_pred             EecCcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccC--HH------------HHHHHHHHHHHHhcC----C
Confidence            33377999999999999999999997  8999999996432211  11            123456688888876    9


Q ss_pred             CCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4039         271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQL  349 (588)
Q Consensus       271 HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql  349 (588)
                      ||||+++++++.+..                            ..|+||||+ +++|.+++..   .....++..++.||
T Consensus        90 hp~iv~~~~~~~~~~----------------------------~~~lv~e~~~g~~L~~~l~~---~~~~~~~~~i~~ql  138 (286)
T 3uqc_A           90 KPGVARVLDVVHTRA----------------------------GGLVVAEWIRGGSLQEVADT---SPSPVGAIRAMQSL  138 (286)
T ss_dssp             CTTBCCEEEEEEETT----------------------------EEEEEEECCCEEEHHHHHTT---CCCHHHHHHHHHHH
T ss_pred             CCCcceeeEEEEECC----------------------------cEEEEEEecCCCCHHHHHhc---CCChHHHHHHHHHH
Confidence            999999999998732                            489999999 5799999853   35667889999999


Q ss_pred             HHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCc
Q psy4039         350 LEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF  429 (588)
Q Consensus       350 ~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~  429 (588)
                      +.||.|||++||+||||||+|||++.+     +.+||+++|                         |++|          
T Consensus       139 ~~aL~~lH~~givH~Dikp~NIll~~~-----g~~kl~~~~-------------------------~~~~----------  178 (286)
T 3uqc_A          139 AAAADAAHRAGVALSIDHPSRVRVSID-----GDVVLAYPA-------------------------TMPD----------  178 (286)
T ss_dssp             HHHHHHHHHTTCCCCCCSGGGEEEETT-----SCEEECSCC-------------------------CCTT----------
T ss_pred             HHHHHHHHHCCCccCCCCcccEEEcCC-----CCEEEEecc-------------------------ccCC----------
Confidence            999999999999999999999999987     788887443                         3332          


Q ss_pred             cCCCCCcCchhhHHHHHHHHhcCCCCCccccccccc----c--cccc---CCCCCCccHHHHHHHHHhhhhCCCCCCCHH
Q psy4039         430 SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY----E--VNAL---PQLNTNVPEVMRRLVAKLLENDPSDRPSAE  500 (588)
Q Consensus       430 ~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~----~--~~~~---~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~  500 (588)
                         ++.++|||||||++|||++|+.||.+.......    .  ....   ......+|+++.++|.+||+.||.+| |++
T Consensus       179 ---~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~R-s~~  254 (286)
T 3uqc_A          179 ---ANPQDDIRGIGASLYALLVNRWPLPEAGVRSGLAPAERDTAGQPIEPADIDRDIPFQISAVAARSVQGDGGIR-SAS  254 (286)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCSEECCBCTTSCBCCHHHHCTTSCHHHHHHHHHHHCTTSSCC-CHH
T ss_pred             ---CCchhHHHHHHHHHHHHHHCCCCCCcCCcchhhHHHHHHhccCCCChhhcccCCCHHHHHHHHHHcccCCccC-CHH
Confidence               236799999999999999999999875432211    0  0111   12345789999999999999999999 999


Q ss_pred             HHHHHHhhhh
Q psy4039         501 LAATVCQLYL  510 (588)
Q Consensus       501 e~l~~L~~~~  510 (588)
                      ++++.|+...
T Consensus       255 el~~~L~~~~  264 (286)
T 3uqc_A          255 TLLNLMQQAT  264 (286)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999887653

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.97  E-value=2.2e-32  Score=305.06  Aligned_cols=198  Identities=15%  Similarity=0.100  Sum_probs=132.6

Q ss_pred             eeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEEe
Q psy4039         201 GKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMH  278 (588)
Q Consensus       201 ~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l~  278 (588)
                      ....+.|++|.+..++..  |..||||++.+........       .+......+.+.+|+++|+++   ..|+||++++
T Consensus       239 ~~~~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~-------~~~~~~~~~~~~~E~~~l~~~---~~~~~i~~~~  308 (569)
T 4azs_A          239 QNQPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILT-------AEESQRNKYELHNEIKFLTQP---PAGFDAPAVL  308 (569)
T ss_dssp             ECC-C--------CCEEEEECSSEEEEEEESSCSTTCSC-------HHHHHHHHHHHHHHHHHHHSC---CTTCCCCCEE
T ss_pred             hhccccCCcccccccccccccceeEEEEEecccccccch-------hhhhHHHHHHHHHHHHHHHhc---CCCCCeeEEE
Confidence            345677777777765554  8999999997543222110       001111345678899999887   6899999999


Q ss_pred             eeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q psy4039         279 FAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLN  357 (588)
Q Consensus       279 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yLH  357 (588)
                      +++++..                            .+||||||+ +++|.++|...+ .+++.   .|+.||+.||+|||
T Consensus       309 ~~~ed~~----------------------------~~yLVMEyv~G~~L~d~i~~~~-~l~~~---~I~~QIl~AL~ylH  356 (569)
T 4azs_A          309 AHGENAQ----------------------------SGWLVMEKLPGRLLSDMLAAGE-EIDRE---KILGSLLRSLAALE  356 (569)
T ss_dssp             EEEECSS----------------------------EEEEEEECCCSEEHHHHHHTTC-CCCHH---HHHHHHHHHHHHHH
T ss_pred             EEEEECC----------------------------EEEEEEecCCCCcHHHHHHhCC-CCCHH---HHHHHHHHHHHHHH
Confidence            9998742                            499999999 579999998764 67765   48999999999999


Q ss_pred             hCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCCcC
Q psy4039         358 MHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS  437 (588)
Q Consensus       358 ~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ks  437 (588)
                      ++|||||||||+|||++.+     +.+||+|||+|+.......     ...+.+||++|||||++.+..       ..++
T Consensus       357 ~~GIIHRDIKPeNILL~~d-----g~vKL~DFGlAr~~~~~~~-----~~~t~vGTp~YmAPE~l~g~~-------~~~~  419 (569)
T 4azs_A          357 KQGFWHDDVRPWNVMVDAR-----QHARLIDFGSIVTTPQDCS-----WPTNLVQSFFVFVNELFAENK-------SWNG  419 (569)
T ss_dssp             HTTCEESCCCGGGEEECTT-----SCEEECCCTTEESCC---C-----CSHHHHHHHHHHHHHHC---------------
T ss_pred             HCCceeccCchHhEEECCC-----CCEEEeecccCeeCCCCCc-----cccCceechhhccHHHhCCCC-------CCcc
Confidence            9999999999999999988     8999999999987654322     123578999999999997653       3569


Q ss_pred             chhhHHHHHHHHhcCCCCCc
Q psy4039         438 DAWTAGTVAYEIFGHDNPFY  457 (588)
Q Consensus       438 DVwS~Gvil~ElltG~~Pf~  457 (588)
                      |+||+|++++++.++..|+.
T Consensus       420 d~~s~g~~~~~l~~~~~~~~  439 (569)
T 4azs_A          420 FWRSAPVHPFNLPQPWSNWL  439 (569)
T ss_dssp             ---------CCCCTTHHHHH
T ss_pred             cccccccchhhhccccchhH
Confidence            99999999999887766653

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.92  E-value=1.1e-26  Score=257.59  Aligned_cols=197  Identities=15%  Similarity=0.095  Sum_probs=140.6

Q ss_pred             EeeeecccCceeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEEee
Q psy4039         200 IGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHF  279 (588)
Q Consensus       200 ~~~~IG~G~fG~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l~~  279 (588)
                      ..+.||+|+||.||+|.+.+..+|+|+...........      ..   ....+.+.+|+.+++.+    +||||+++..
T Consensus       340 ~~~~LG~G~fg~Vy~~~~~~~~~~~k~~~~~~~~~~~~------~~---~~~~~~~~~E~~il~~l----~h~nIv~~~~  406 (540)
T 3en9_A          340 PEHLIGKGAEADIKRDSYLDFDVIIKERVKKGYRDERL------DE---NIRKSRTAREARYLALV----KDFGIPAPYI  406 (540)
T ss_dssp             --------CCEEEEEEECSSCEEEEEEECCCTTSCHHH------HH---HHHHHHHHHHHHHHHHG----GGGTCCCCCE
T ss_pred             CCCEEeeCCCEEEEEEEECCCeEEEEEEecccccchhh------hh---HHHHHHHHHHHHHHHhc----CCCCcCceEE
Confidence            35689999999999998889999999975422221110      00   01234567899999998    9999994444


Q ss_pred             eeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh
Q psy4039         280 AFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNM  358 (588)
Q Consensus       280 ~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yLH~  358 (588)
                      ++.+..                            ..|+||||+ +++|.+++..         +..++.|+++||.|||+
T Consensus       407 ~~~~~~----------------------------~~~lVmE~~~ggsL~~~l~~---------~~~i~~qi~~aL~~LH~  449 (540)
T 3en9_A          407 FDVDLD----------------------------NKRIMMSYINGKLAKDVIED---------NLDIAYKIGEIVGKLHK  449 (540)
T ss_dssp             EEEETT----------------------------TTEEEEECCCSEEHHHHSTT---------CTHHHHHHHHHHHHHHH
T ss_pred             EEEeCC----------------------------ccEEEEECCCCCCHHHHHHH---------HHHHHHHHHHHHHHHHH
Confidence            443321                            269999999 5899999865         56899999999999999


Q ss_pred             CCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCcccc--ccccccccCCccccchhHHhcCCCCccCCCCCc
Q psy4039         359 HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQY--SSADIELGGNVALMAPEVALATPGLFSFVNYSK  436 (588)
Q Consensus       359 ~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~--~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~k  436 (588)
                      +||+||||||+|||++.       .+||+|||+|+..........  .......+||+.|||||++......    |...
T Consensus       450 ~gIiHrDiKp~NILl~~-------~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~GT~~y~APEv~~~~~~~----Y~~~  518 (540)
T 3en9_A          450 NDVIHNDLTTSNFIFDK-------DLYIIDFGLGKISNLDEDKAVDLIVFKKAVLSTHHEKFDEIWERFLEG----YKSV  518 (540)
T ss_dssp             TTEECTTCCTTSEEESS-------SEEECCCTTCEECCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH----HHHH
T ss_pred             CcCccCCCCHHHEEECC-------eEEEEECccCEECCCccccccchhhhhhhhcCCCCcCCHHHHHHHHHH----HHHH
Confidence            99999999999999985       689999999988754211100  0011256899999999999763211    3356


Q ss_pred             CchhhHHHHHHHHhcCCCCCc
Q psy4039         437 SDAWTAGTVAYEIFGHDNPFY  457 (588)
Q Consensus       437 sDVwS~Gvil~ElltG~~Pf~  457 (588)
                      +|+||..+-..+.+.++.+|.
T Consensus       519 ~d~ws~vl~~l~~v~~r~rY~  539 (540)
T 3en9_A          519 YDRWEIILELMKDVERRARYV  539 (540)
T ss_dssp             CTTHHHHHHHHHHHHTCSCCC
T ss_pred             HhHHHHHHHHHHHHHhccccC
Confidence            899999999998888777663

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.86  E-value=2e-22  Score=205.24  Aligned_cols=158  Identities=17%  Similarity=0.126  Sum_probs=111.0

Q ss_pred             EEeeeecccCceeEEEEEEC-CeeEEEEEEecCCCCcchH-HHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEE
Q psy4039         199 QIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSH-AILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVV  276 (588)
Q Consensus       199 ~~~~~IG~G~fG~Vy~a~~~-g~~vAVK~i~~~~~~~~~~-~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~  276 (588)
                      .+++.||+|+||.||+|.+. |+.||||+++......... .....+...+.......+.+|+.+++.+    +  | ++
T Consensus        93 ~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l----~--~-~~  165 (282)
T 1zar_A           93 AIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKL----Q--G-LA  165 (282)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHT----T--T-SS
T ss_pred             EecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhc----c--C-CC
Confidence            34499999999999999995 8899999995422110000 0000000001111234567899999998    4  4 55


Q ss_pred             EeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q psy4039         277 MHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTH  355 (588)
Q Consensus       277 l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~y  355 (588)
                      +++++...                             ..|+||||+ +++|.+ +.     .  .....++.|++.||.|
T Consensus       166 v~~~~~~~-----------------------------~~~lvmE~~~g~~L~~-l~-----~--~~~~~i~~qi~~~l~~  208 (282)
T 1zar_A          166 VPKVYAWE-----------------------------GNAVLMELIDAKELYR-VR-----V--ENPDEVLDMILEEVAK  208 (282)
T ss_dssp             SCCEEEEE-----------------------------TTEEEEECCCCEEGGG-CC-----C--SCHHHHHHHHHHHHHH
T ss_pred             cCeEEecc-----------------------------ceEEEEEecCCCcHHH-cc-----h--hhHHHHHHHHHHHHHH
Confidence            66555431                             269999999 568877 31     1  2345799999999999


Q ss_pred             HHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhc
Q psy4039         356 LNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALA  424 (588)
Q Consensus       356 LH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~  424 (588)
                      ||++||+||||||+|||++ +     +.+||+|||+|+.                  +..++|||++..
T Consensus       209 lH~~giiHrDlkp~NILl~-~-----~~vkl~DFG~a~~------------------~~~~~a~e~l~r  253 (282)
T 1zar_A          209 FYHRGIVHGDLSQYNVLVS-E-----EGIWIIDFPQSVE------------------VGEEGWREILER  253 (282)
T ss_dssp             HHHTTEECSCCSTTSEEEE-T-----TEEEECCCTTCEE------------------TTSTTHHHHHHH
T ss_pred             HHHCCCEeCCCCHHHEEEE-C-----CcEEEEECCCCeE------------------CCCCCHHHHHHH
Confidence            9999999999999999999 6     7999999999853                  336899999853

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.77  E-value=4.5e-19  Score=177.89  Aligned_cols=148  Identities=20%  Similarity=0.126  Sum_probs=102.7

Q ss_pred             eEEeeeecccCceeEEEEEE--CCee--EEEEEEecCCCCcchHHHHHHHhhhh----------cccccchhhhHHHHHh
Q psy4039         198 IQIGKFIAKGTNAVVYEATF--RGVE--YALKMMFNYSAASNSHAILKAMSKEL----------LPLRKPLRLNEDMLMN  263 (588)
Q Consensus       198 ~~~~~~IG~G~fG~Vy~a~~--~g~~--vAVK~i~~~~~~~~~~~~~k~~~~e~----------~~~~~~~~~~Ei~il~  263 (588)
                      |.+.+.||+|+||.||+|.+  .|+.  ||||+++........   ........          .......+.+|+.+|.
T Consensus        49 ~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~  125 (258)
T 1zth_A           49 TAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDK---MDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLE  125 (258)
T ss_dssp             EEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC----------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHH
T ss_pred             hhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhh---HHHhhcccchhhhhccChHHHHHHHHHHHHHHHH
Confidence            67889999999999999998  5888  999997542111000   00000000          0011124667999999


Q ss_pred             hhcCCCCCCce--EEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCC--C----cHHHHHHHhcC
Q psy4039         264 SVENLPPHPNV--VVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYN--T----DLRNYLRERCA  335 (588)
Q Consensus       264 ~l~~l~~HpNI--V~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~--g----sL~~~L~~~~~  335 (588)
                      .+    .|+||  ..++++  .                              ..++||||++  |    +|.++...   
T Consensus       126 ~l----~~~~i~~p~~~~~--~------------------------------~~~lVmE~~g~~g~~~~~L~~~~~~---  166 (258)
T 1zth_A          126 RA----KEAGVSVPQPYTY--M------------------------------KNVLLMEFIGEDELPAPTLVELGRE---  166 (258)
T ss_dssp             HH----HHTTCCCCCEEEE--E------------------------------TTEEEEECCEETTEECCBHHHHGGG---
T ss_pred             HH----HhCCCCCCeEEEc--C------------------------------CCEEEEEecCCCCCccccHHHHhhc---
Confidence            88    56543  222221  1                              1689999994  3    67765432   


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHH-hCCceeccCCCCcEEEcCCCCCCCCceeeecccccccc
Q psy4039         336 QLSMHERVLLFTQLLEGVTHLN-MHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTN  395 (588)
Q Consensus       336 ~l~~~~~~~i~~ql~~gL~yLH-~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~  395 (588)
                       .++..+..++.|++.||.||| +.||+||||||+|||++.       .++|+|||+|...
T Consensus       167 -~~~~~~~~i~~qi~~~l~~lH~~~givHrDlkp~NILl~~-------~~~liDFG~a~~~  219 (258)
T 1zth_A          167 -LKELDVEGIFNDVVENVKRLYQEAELVHADLSEYNIMYID-------KVYFIDMGQAVTL  219 (258)
T ss_dssp             -GGGSCHHHHHHHHHHHHHHHHHTSCEECSSCSTTSEEESS-------SEEECCCTTCEET
T ss_pred             -cChHHHHHHHHHHHHHHHHHHHHCCEEeCCCCHHHEEEcC-------cEEEEECcccccC
Confidence             235577899999999999999 999999999999999974       5899999999764

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.64  E-value=2.7e-17  Score=173.30  Aligned_cols=160  Identities=16%  Similarity=0.138  Sum_probs=93.6

Q ss_pred             eEEeeeecccCceeEEEEEEC-CeeEEEEEEecCCCCcchHHHHHHHhhhhc-ccccchhhhHHHHHhhhcCCCCCCceE
Q psy4039         198 IQIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAILKAMSKELL-PLRKPLRLNEDMLMNSVENLPPHPNVV  275 (588)
Q Consensus       198 ~~~~~~IG~G~fG~Vy~a~~~-g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~-~~~~~~~~~Ei~il~~l~~l~~HpNIV  275 (588)
                      |.+++.||+|+||.||+|.+. |+.||||+++.........   +. .++.. .........+..+....    .|+|++
T Consensus        97 Y~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v---~~-~r~~~~~~~~~~~~~~~rl~A~k----E~~nL~  168 (397)
T 4gyi_A           97 YSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTV---KA-NRDYLRNRSTGSWMYLSRLAAIK----EFAFMK  168 (397)
T ss_dssp             SEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCC---C---CEECTTSCHHHHHHHHHHHHHH----HHHHHH
T ss_pred             EEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHH---HH-HHHHHHhhccccHHHHHHHHHHH----HHHHHH
Confidence            899999999999999999986 8999999986422111000   00 00000 00000111111121111    344444


Q ss_pred             EEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCC-cHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy4039         276 VMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNT-DLRNYLRERCAQLSMHERVLLFTQLLEGVT  354 (588)
Q Consensus       276 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~g-sL~~~L~~~~~~l~~~~~~~i~~ql~~gL~  354 (588)
                      +++.......               ..+    ..  + ..++||||++| +|.++       .+......++.||+.+|.
T Consensus       169 rL~~~gv~vp---------------~p~----~~--~-~~~LVME~i~G~~L~~l-------~~~~~~~~l~~qll~~l~  219 (397)
T 4gyi_A          169 ALYEEGFPVP---------------EPI----AQ--S-RHTIVMSLVDALPMRQV-------SSVPDPASLYADLIALIL  219 (397)
T ss_dssp             HHHHTTCSCC---------------CEE----EE--E-TTEEEEECCSCEEGGGC-------CCCSCHHHHHHHHHHHHH
T ss_pred             HHHhcCCCCC---------------eee----ec--c-CceEEEEecCCccHhhh-------cccHHHHHHHHHHHHHHH
Confidence            4432211100               000    00  0 13699999964 55432       222345678899999999


Q ss_pred             HHHhCCceeccCCCCcEEEcCCCCCC-----CCceeeeccccccc
Q psy4039         355 HLNMHRTAHRDLKSDNILLDCSEDNT-----CPQLVITDFGSSYT  394 (588)
Q Consensus       355 yLH~~~IvHrDLKp~NILld~~~~~~-----~~~vkL~DFGla~~  394 (588)
                      |||++|||||||||.|||++++.+..     ...+.|+||+-+..
T Consensus       220 ~lH~~gIVHrDLKp~NILl~~dgd~~d~~~~~~~~~iID~~Q~V~  264 (397)
T 4gyi_A          220 RLAKHGLIHGDFNEFNILIREEKDAEDPSSITLTPIIIXFPQMVS  264 (397)
T ss_dssp             HHHHTTEECSCCSTTSEEEEEEECSSCTTSEEEEEEECCCTTCEE
T ss_pred             HHHHCCCcCCCCCHHHEEEeCCCCcccccccccceEEEEeCCccc
Confidence            99999999999999999998763210     01378999997754

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=99.19  E-value=8.5e-11  Score=117.01  Aligned_cols=138  Identities=16%  Similarity=-0.015  Sum_probs=104.6

Q ss_pred             CCeEEeeeecccCceeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceE
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVV  275 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV  275 (588)
                      ++|.+...++.|+.+.||++...+..+++|+......                 .....+.+|+.+++.+.   .|.++.
T Consensus        14 ~~~~~~~~~~g~s~~~v~~~~~~~~~~vlK~~~~~~~-----------------~~~~~~~~E~~~l~~l~---~~~~vP   73 (263)
T 3tm0_A           14 EKYRCVKDTEGMSPAKVYKLVGENENLYLKMTDSRYK-----------------GTTYDVEREKDMMLWLE---GKLPVP   73 (263)
T ss_dssp             TTSEEEECCSCCSSSEEEEEECSSCEEEEEEECGGGT-----------------TSTTCHHHHHHHHHHHT---TTSCCC
T ss_pred             ccceeEeeccCCCCCeEEEEECCCCcEEEEeCCcccC-----------------CCHHHHHHHHHHHHHHh---cCCCCC
Confidence            6788999999999999999988889999999842110                 12335778999999883   356677


Q ss_pred             EEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCC-cHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy4039         276 VMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNT-DLRNYLRERCAQLSMHERVLLFTQLLEGVT  354 (588)
Q Consensus       276 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~g-sL~~~L~~~~~~l~~~~~~~i~~ql~~gL~  354 (588)
                      ++++++.+.                            +..|+|||++.| +|.+.+      .+......++.+++++|.
T Consensus        74 ~v~~~~~~~----------------------------~~~~lv~e~i~G~~l~~~~------~~~~~~~~~~~~l~~~l~  119 (263)
T 3tm0_A           74 KVLHFERHD----------------------------GWSNLLMSEADGVLCSEEY------EDEQSPEKIIELYAECIR  119 (263)
T ss_dssp             CEEEEEEET----------------------------TEEEEEEECCSSEEHHHHC------CTTTCHHHHHHHHHHHHH
T ss_pred             eEEEEEecC----------------------------CceEEEEEecCCeehhhcc------CCcccHHHHHHHHHHHHH
Confidence            777776542                            248999999965 776542      122334578899999999


Q ss_pred             HHHh-----------------------------------------------------------CCceeccCCCCcEEEcC
Q psy4039         355 HLNM-----------------------------------------------------------HRTAHRDLKSDNILLDC  375 (588)
Q Consensus       355 yLH~-----------------------------------------------------------~~IvHrDLKp~NILld~  375 (588)
                      .||+                                                           .+++|+|++|.|||+++
T Consensus       120 ~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~  199 (263)
T 3tm0_A          120 LFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKD  199 (263)
T ss_dssp             HHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGGGSTTCSSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEET
T ss_pred             HHhCCCcccCCCcchHHHHHHHHHHHHhccccccccccccccccCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEEC
Confidence            9998                                                           45899999999999976


Q ss_pred             CCCCCCCceeeeccccc
Q psy4039         376 SEDNTCPQLVITDFGSS  392 (588)
Q Consensus       376 ~~~~~~~~vkL~DFGla  392 (588)
                      +     ..+.|+||+.+
T Consensus       200 ~-----~~~~lIDwe~a  211 (263)
T 3tm0_A          200 G-----KVSGFIDLGRS  211 (263)
T ss_dssp             T-----EEEEECCCTTC
T ss_pred             C-----cEEEEEEchhc
Confidence            4     45669999977

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=98.86  E-value=7.4e-09  Score=102.03  Aligned_cols=133  Identities=12%  Similarity=0.055  Sum_probs=91.3

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC-CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~-g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      +.++.+....+.|..+.||++... |..++||+....                    ....+.+|+.+++.+.   .| +
T Consensus        19 ~~~~~~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~--------------------~~~~~~~E~~~l~~l~---~~-~   74 (264)
T 1nd4_A           19 LFGYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSG--------------------ALNELQDEAARLSWLA---TT-G   74 (264)
T ss_dssp             TTTCEEEECSCTTSSCEEEEEECTTSCCEEEEEECSC--------------------TTSCHHHHHHHHHHHH---TT-T
T ss_pred             cCCCceEecccCCCCceEEEEecCCCCeEEEEeCCcc--------------------cchhhhHHHHHHHHHH---hC-C
Confidence            356776655556777999999765 578999997321                    1134567999998883   23 3


Q ss_pred             --eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCC-cHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy4039         274 --VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNT-DLRNYLRERCAQLSMHERVLLFTQLL  350 (588)
Q Consensus       274 --IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~g-sL~~~L~~~~~~l~~~~~~~i~~ql~  350 (588)
                        +.+++++..+.                            +..++|||++.| +|.  ..    ..+   ...++.+++
T Consensus        75 ~~vP~~~~~~~~~----------------------------~~~~~v~e~i~G~~l~--~~----~~~---~~~~~~~l~  117 (264)
T 1nd4_A           75 VPCAAVLDVVTEA----------------------------GRDWLLLGEVPGQDLL--SS----HLA---PAEKVSIMA  117 (264)
T ss_dssp             CCBCCEEEEEECS----------------------------SCEEEEEECCSSEETT--TS----CCC---HHHHHHHHH
T ss_pred             CCCCeEEEeccCC----------------------------CCCEEEEEecCCcccC--cC----cCC---HhHHHHHHH
Confidence              44566665431                            138999999965 553  11    122   235677778


Q ss_pred             HHHHHHHhCC----------------------------------------------------------ceeccCCCCcEE
Q psy4039         351 EGVTHLNMHR----------------------------------------------------------TAHRDLKSDNIL  372 (588)
Q Consensus       351 ~gL~yLH~~~----------------------------------------------------------IvHrDLKp~NIL  372 (588)
                      +.|..||+..                                                          ++|+|++|.|||
T Consensus       118 ~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HgDl~~~Nil  197 (264)
T 1nd4_A          118 DAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPAELFARLKARMPDGEDLVVTHGDACLPNIM  197 (264)
T ss_dssp             HHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCCHHHHHHHHHHTCCSSCCEEEECSSCCGGGEE
T ss_pred             HHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhccCccHHHHHHHHHHhcCCCCCeEEECCCCCCCcEE
Confidence            8888888643                                                          999999999999


Q ss_pred             EcCCCCCCCCceeeecccccc
Q psy4039         373 LDCSEDNTCPQLVITDFGSSY  393 (588)
Q Consensus       373 ld~~~~~~~~~vkL~DFGla~  393 (588)
                      ++.+     ..+.|+|||.|.
T Consensus       198 ~~~~-----~~~~liD~~~a~  213 (264)
T 1nd4_A          198 VENG-----RFSGFIDCGRLG  213 (264)
T ss_dssp             EETT-----EEEEECCCTTCE
T ss_pred             EECC-----cEEEEEcchhcc
Confidence            9765     456699999873

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=98.85  E-value=6.5e-09  Score=108.45  Aligned_cols=145  Identities=15%  Similarity=0.145  Sum_probs=101.8

Q ss_pred             EeeeecccCceeEEEEEECCeeEEEEEEe--cCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEE
Q psy4039         200 IGKFIAKGTNAVVYEATFRGVEYALKMMF--NYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVM  277 (588)
Q Consensus       200 ~~~~IG~G~fG~Vy~a~~~g~~vAVK~i~--~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l  277 (588)
                      ..+.|+.|.++.||+....+..+++|+..  ....                ......+.+|..+++.+..  .+..+.++
T Consensus        42 ~~~~l~~G~sn~~y~v~~~~~~~vlr~~~~p~~~~----------------~~~~~~~~~E~~~l~~L~~--~~vpvP~~  103 (359)
T 3dxp_A           42 SVEQFKGGQSNPTFKLVTPGQTYVMRAKPGPKSKL----------------LPSAHAIEREYRVMDALAG--TDVPVAKM  103 (359)
T ss_dssp             EEEECCC-CCSCEEEEECSSCEEEEECCCC--------------------------CHHHHHHHHHHHTT--SSSCCCCE
T ss_pred             eEEEcCCcccceEEEEEECCceEEEEeCCCCCCCC----------------CCcHHHHHHHHHHHHHhhc--CCCCCCcE
Confidence            35678999999999999888899999863  2110                0123456789999998832  24556777


Q ss_pred             eeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCC-cHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q psy4039         278 HFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNT-DLRNYLRERCAQLSMHERVLLFTQLLEGVTHL  356 (588)
Q Consensus       278 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~g-sL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yL  356 (588)
                      +.++.+..                         ..+..|+|||+++| .+.+.   ....++..+...++.++++.|..|
T Consensus       104 ~~~~~~~~-------------------------~~g~~~~vme~v~G~~l~~~---~~~~l~~~~~~~~~~~l~~~La~L  155 (359)
T 3dxp_A          104 YALCEDES-------------------------VIGRAFYIMEFVSGRVLWDQ---SLPGMSPAERTAIYDEMNRVIAAM  155 (359)
T ss_dssp             EEEECCTT-------------------------TTSSCEEEEECCCCBCCCCT---TCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCCC-------------------------ccCCeEEEEEecCCeecCCC---ccccCCHHHHHHHHHHHHHHHHHH
Confidence            77765521                         01237899999965 44221   112577888999999999999999


Q ss_pred             Hh----------------------------------------------------------CCceeccCCCCcEEEcCCCC
Q psy4039         357 NM----------------------------------------------------------HRTAHRDLKSDNILLDCSED  378 (588)
Q Consensus       357 H~----------------------------------------------------------~~IvHrDLKp~NILld~~~~  378 (588)
                      |+                                                          .+++|+|+++.|||++.+..
T Consensus       156 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~  235 (359)
T 3dxp_A          156 HTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESIPAMDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEP  235 (359)
T ss_dssp             HHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCCHHHHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSS
T ss_pred             hCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCcCChHHHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCC
Confidence            97                                                          36899999999999987621


Q ss_pred             CCCCceeeecccccc
Q psy4039         379 NTCPQLVITDFGSSY  393 (588)
Q Consensus       379 ~~~~~vkL~DFGla~  393 (588)
                         ..+.|+||+.|.
T Consensus       236 ---~v~~viDwe~a~  247 (359)
T 3dxp_A          236 ---RVLAVLDWELST  247 (359)
T ss_dssp             ---CEEEECCCTTCE
T ss_pred             ---cEEEEECccccc
Confidence               236899999874

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=98.70  E-value=4.9e-09  Score=106.85  Aligned_cols=193  Identities=17%  Similarity=0.180  Sum_probs=116.3

Q ss_pred             eeecccCceeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc--eEEEee
Q psy4039         202 KFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN--VVVMHF  279 (588)
Q Consensus       202 ~~IG~G~fG~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN--IV~l~~  279 (588)
                      +.++.|.+..||+..   ..++||+....                   .....+.+|..+|+.+.   .+..  +.+++.
T Consensus        26 ~~~~~G~~n~v~~v~---~~~vlR~~~~~-------------------~~~~~~~~E~~~l~~l~---~~~~v~vP~~~~   80 (304)
T 3sg8_A           26 EISGEGNDCIAYEIN---RDFIFKFPKHS-------------------RGSTNLFNEVNILKRIH---NKLPLPIPEVVF   80 (304)
T ss_dssp             CEEEECSSEEEEEST---TSEEEEEESSH-------------------HHHHHHHHHHHHHHHHT---TSSSSCCCCEEE
T ss_pred             EecCCCCcceEEEEC---CEEEEEecCCc-------------------chHHHHHHHHHHHHHHH---hcCCCCCCceEe
Confidence            458999999999874   67999986310                   01234567888888772   2222  223332


Q ss_pred             eeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCC-cHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh
Q psy4039         280 AFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNT-DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNM  358 (588)
Q Consensus       280 ~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~g-sL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yLH~  358 (588)
                      ...+.                         ......|+||+++.| +|......   .++..++..++.++++.|..||+
T Consensus        81 ~~~~~-------------------------~~~~~~~~vm~~i~G~~l~~~~~~---~l~~~~~~~~~~~l~~~la~LH~  132 (304)
T 3sg8_A           81 TGMPS-------------------------ETYQMSFAGFTKIKGVPLTPLLLN---NLPKQSQNQAAKDLARFLSELHS  132 (304)
T ss_dssp             ECCCC-------------------------SSCSCSCEEEECCCCEECCHHHHH---TSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecCCC-------------------------CCCCcceEEEcccCCeECCccccc---cCCHHHHHHHHHHHHHHHHHHHc
Confidence            22111                         001125889999965 55433221   67888888899999999988885


Q ss_pred             ----------------------------------------------------------CCceeccCCCCcEEEcCCCCCC
Q psy4039         359 ----------------------------------------------------------HRTAHRDLKSDNILLDCSEDNT  380 (588)
Q Consensus       359 ----------------------------------------------------------~~IvHrDLKp~NILld~~~~~~  380 (588)
                                                                                ..++|+|++|.||+++.+..  
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~--  210 (304)
T 3sg8_A          133 INISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQMKKVDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKN--  210 (304)
T ss_dssp             SCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTT--
T ss_pred             CCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCcccHHHHHHHHHHHHhccccccCCceeEeCCCCcccEEEeCCCC--
Confidence                                                                      24799999999999987311  


Q ss_pred             CCceeeeccccccccCCCCcccccccc---------ccccCCccccc-hhHHhcCCCCccCCCCCcCchhhHHHHHHHHh
Q psy4039         381 CPQLVITDFGSSYTNKSGLSMQYSSAD---------IELGGNVALMA-PEVALATPGLFSFVNYSKSDAWTAGTVAYEIF  450 (588)
Q Consensus       381 ~~~vkL~DFGla~~~~~~~~~~~~~~~---------~~~~GT~~Y~A-PE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ell  450 (588)
                       ..+.|+||+.+...............         .......+... |+......        ...+.|++|.++|.+.
T Consensus       211 -~~~~~iD~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~l~~Y~~~~~~~~~~r~~--------~~~~~~~l~~~~~~~~  281 (304)
T 3sg8_A          211 -TICGIIDFGDAAISDPDNDFISLMEDDEEYGMEFVSKILNHYKHKDIPTVLEKYR--------MKEKYWSFEKIIYGKE  281 (304)
T ss_dssp             -EEEEECCCTTCEEECTTHHHHTTCCTTTSCCHHHHHHHHHHHTCSCHHHHHHHHH--------HHHHHHHHHHHHHHHH
T ss_pred             -CEEEEEeCCCCccCChHHHHHHHHhhccccCHHHHHHHHHHcCCCCcHHHHHHHH--------HHHHHHHHHHHHHHHH
Confidence             46789999998764331111000000         00000001112 33222110        1158999999999999


Q ss_pred             cCCCCCcc
Q psy4039         451 GHDNPFYQ  458 (588)
Q Consensus       451 tG~~Pf~~  458 (588)
                      +|..+|..
T Consensus       282 ~g~~~~~~  289 (304)
T 3sg8_A          282 YGYMDWYE  289 (304)
T ss_dssp             TTCHHHHH
T ss_pred             cCCHHHHH
Confidence            99988754

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=98.01  E-value=2e-05  Score=80.22  Aligned_cols=139  Identities=18%  Similarity=0.126  Sum_probs=83.5

Q ss_pred             eeecccCceeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEEeeee
Q psy4039         202 KFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAF  281 (588)
Q Consensus       202 ~~IG~G~fG~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l~~~~  281 (588)
                      +.++.|....||+.   +..++||+-..      .             .....+.+|..+|+.+..... -.+.+.+.++
T Consensus        25 ~~l~~G~~n~v~~v---g~~~VlR~~~~------~-------------~~~~~~~~E~~~L~~L~~~~~-v~VP~~~~~~   81 (306)
T 3tdw_A           25 ESLGEGFRNYAILV---NGDWVFRFPKS------Q-------------QGADELNKEIQLLPLLVGCVK-VNIPQYVYIG   81 (306)
T ss_dssp             EEEEECSSEEEEEE---TTTEEEEEESS------H-------------HHHHHHHHHHHHHHHHTTTCS-SBCCCEEEEE
T ss_pred             eecCCCcceeEEEE---CCEEEEEecCC------c-------------hHHHHHHHHHHHHHHHHhcCC-CCCCCeEeec
Confidence            45788988999988   78899998521      0             012345679999998832100 0123334333


Q ss_pred             eccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCC-cHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh--
Q psy4039         282 TDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNT-DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNM--  358 (588)
Q Consensus       282 ~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~g-sL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yLH~--  358 (588)
                      ...                           .+..|++||++.| +|....-.   .++..+...++.++.+.|..||+  
T Consensus        82 ~~~---------------------------~g~~~~v~e~i~G~~l~~~~~~---~l~~~~~~~~~~~lg~~La~LH~~~  131 (306)
T 3tdw_A           82 KRS---------------------------DGNPFVGYRKVQGQILGEDGMA---VLPDDAKDRLALQLAEFMNELSAFP  131 (306)
T ss_dssp             ECT---------------------------TSCEEEEEECCCSEECHHHHHT---TSCHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             ccC---------------------------CCceEEEEeccCCeECchhhhh---hCCHHHHHHHHHHHHHHHHHHhcCC
Confidence            210                           1237899999965 55442111   34455555555555555555553  


Q ss_pred             ----------------------------------------------------------CCceeccCCCCcEEEcCCCCCC
Q psy4039         359 ----------------------------------------------------------HRTAHRDLKSDNILLDCSEDNT  380 (588)
Q Consensus       359 ----------------------------------------------------------~~IvHrDLKp~NILld~~~~~~  380 (588)
                                                                                ..++|+|++|.|||++.+..+.
T Consensus       132 ~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~  211 (306)
T 3tdw_A          132 VETAISAGVPVTNLKNKILLLSEAVEDQVFPLLDESLRDYLTLRFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQT  211 (306)
T ss_dssp             HHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSC
T ss_pred             cccccccCCChHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCC
Confidence                                                                      2459999999999998721111


Q ss_pred             CCceeeeccccccc
Q psy4039         381 CPQLVITDFGSSYT  394 (588)
Q Consensus       381 ~~~vkL~DFGla~~  394 (588)
                       ..+.|+||+.+..
T Consensus       212 -~~~~~iD~~~a~~  224 (306)
T 3tdw_A          212 -PLTGIIDFGDAAI  224 (306)
T ss_dssp             -CEEEECCCTTCEE
T ss_pred             -ceEEEEehhhcCC
Confidence             3457999998754

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=97.74  E-value=0.00014  Score=71.92  Aligned_cols=136  Identities=15%  Similarity=0.070  Sum_probs=85.1

Q ss_pred             CCeEEeeeecccCce-eEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         196 DDIQIGKFIAKGTNA-VVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG-~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      .+|+.. .+..|..| .||+....  +..+.||+-...                    ....+.+|..+|+.+.....  
T Consensus        25 ~g~~~~-~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~--------------------~~~~~~~E~~~l~~l~~~vP--   81 (272)
T 4gkh_A           25 YGYRWA-RDNVGQSGATIYRLYGKPNAPELFLKHGKGS--------------------VANDVTDEMVRLNWLTAFMP--   81 (272)
T ss_dssp             TTCEEE-EEECSSSSCEEEEEECCTTCCCEEEEEEETH--------------------HHHHHHHHHHHHHHHTTTSC--
T ss_pred             cCCeEE-EccCCCcCCeEEEEEecCCCeEEEEEECCCC--------------------CHhHHHHHHHHHHHhccCCC--
Confidence            344432 34556655 68987664  568999986321                    12345668888888743222  


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCC-cHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNT-DLRNYLRERCAQLSMHERVLLFTQLLE  351 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~g-sL~~~L~~~~~~l~~~~~~~i~~ql~~  351 (588)
                       +-+++.++.+.                            ...|+|||++.| ++.+.....     ......+..+++.
T Consensus        82 -VP~v~~~~~~~----------------------------~~~~lvme~l~G~~~~~~~~~~-----~~~~~~~~~~l~~  127 (272)
T 4gkh_A           82 -LPTIKHFIRTP----------------------------DDAWLLTTAIPGKTAFQVLEEY-----PDSGENIVDALAV  127 (272)
T ss_dssp             -CCCEEEEEEET----------------------------TEEEEEEECCCSEEHHHHHHHC-----GGGHHHHHHHHHH
T ss_pred             -cCeEEEEEEEC----------------------------CeEEEEEEeeCCccccccccCC-----HHHHHHHHHHHHH
Confidence             44555665542                            148999999965 666554321     1223345556666


Q ss_pred             HHHHHHhC----------------------------------------------------------CceeccCCCCcEEE
Q psy4039         352 GVTHLNMH----------------------------------------------------------RTAHRDLKSDNILL  373 (588)
Q Consensus       352 gL~yLH~~----------------------------------------------------------~IvHrDLKp~NILl  373 (588)
                      .|.-||+.                                                          .++|+|+.+.|||+
T Consensus       128 ~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HGDl~~~Nil~  207 (272)
T 4gkh_A          128 FLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIF  207 (272)
T ss_dssp             HHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTCCHHHHHHHHHTTCCCCCCEEEECSCCCTTSEEE
T ss_pred             HHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhccccccchHHHHHHHHHHhcccccCCcEEEcCCCCCCeEEE
Confidence            66666631                                                          26899999999999


Q ss_pred             cCCCCCCCCceeeecccccc
Q psy4039         374 DCSEDNTCPQLVITDFGSSY  393 (588)
Q Consensus       374 d~~~~~~~~~vkL~DFGla~  393 (588)
                      +.+     ..+-|+||+.+.
T Consensus       208 ~~~-----~~~~viDwe~a~  222 (272)
T 4gkh_A          208 DEG-----KLIGCIDVGRVG  222 (272)
T ss_dssp             ETT-----EEEEECCCTTCE
T ss_pred             ECC-----eEEEEEECcccc
Confidence            865     456699999874

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=97.61  E-value=7.7e-05  Score=77.15  Aligned_cols=31  Identities=13%  Similarity=0.074  Sum_probs=25.5

Q ss_pred             hCCceeccCCCCcEEEcCCCCCCCCceeeecccccc
Q psy4039         358 MHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSY  393 (588)
Q Consensus       358 ~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~  393 (588)
                      ...++|+|+.+.|||++++     ..+.|+||+.|.
T Consensus       221 ~~~l~HgDl~~~Nil~~~~-----~~~~vIDwe~a~  251 (357)
T 3ats_A          221 EPVLLWGDARVGNVLYRDF-----QPVAVLDWEMVA  251 (357)
T ss_dssp             CCEEECSSCSGGGEEEETT-----EEEEECCGGGCE
T ss_pred             CceEEeCCCCCCeEEEeCC-----cEEEEEcccccc
Confidence            3578999999999999843     457899999874

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=97.61  E-value=0.00022  Score=75.06  Aligned_cols=30  Identities=17%  Similarity=0.235  Sum_probs=25.2

Q ss_pred             hCCceeccCCCCcEEEcCCCCCCCCceeeecccccc
Q psy4039         358 MHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSY  393 (588)
Q Consensus       358 ~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~  393 (588)
                      ...++|+|+.+.|||++.+      .++|+||..+.
T Consensus       226 ~~~L~HGDl~~~Nil~~~~------~~~lID~e~a~  255 (397)
T 2olc_A          226 AETLIHGDLHTGSIFASEH------ETKVIDPEFAF  255 (397)
T ss_dssp             CCEEECSCCSGGGEEECSS------CEEECCCTTCE
T ss_pred             CCceeeCCCCcCcEEEeCC------CeEEEeCcccc
Confidence            4689999999999999765      47899998773

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=97.54  E-value=0.0006  Score=69.44  Aligned_cols=29  Identities=24%  Similarity=0.375  Sum_probs=25.8

Q ss_pred             CCceeccCCCCcEEEcCCCCCCCCceeeeccccc
Q psy4039         359 HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSS  392 (588)
Q Consensus       359 ~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla  392 (588)
                      .+++|+|+++.|||++.+     ..+.|+||+.+
T Consensus       222 ~~l~HgD~~~~Nil~~~~-----~~~~lIDfe~a  250 (346)
T 2q83_A          222 PNLCHQDYGTGNTLLGEN-----EQIWVIDLDTV  250 (346)
T ss_dssp             CCEECSSCSTTSEEECGG-----GCEEECCCTTC
T ss_pred             CceecCCCCcccEEEeCC-----CcEEEEehhhc
Confidence            689999999999999766     57889999976

>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A

Probab=97.49  E-value=0.0005  Score=65.97  Aligned_cols=142  Identities=11%  Similarity=0.096  Sum_probs=92.4

Q ss_pred             cHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh-CCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCcccc
Q psy4039         325 DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNM-HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQY  403 (588)
Q Consensus       325 sL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yLH~-~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~  403 (588)
                      ||.+.|...+.+++++++|.++.|.+.+|.-+-. ..-..+=+-|..|++..+     |++-+.+ +.+.          
T Consensus        34 SL~eIL~~~~~PlsEEqaWALc~Qc~~~L~~~~~~~~~~~~i~~~~~i~l~~d-----G~V~f~~-~~s~----------   97 (229)
T 2yle_A           34 SLEEILRLYNQPINEEQAWAVCYQCCGSLRAAARRRQPRHRVRSAAQIRVWRD-----GAVTLAP-AADD----------   97 (229)
T ss_dssp             EHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCSGGGEEEETT-----SCEEECC-C-------------
T ss_pred             cHHHHHHHcCCCcCHHHHHHHHHHHHHHHHhhhhcccCCceecCCcceEEecC-----Cceeccc-cccc----------
Confidence            7999999888899999999999999999877621 111122234578888877     6665543 1110          


Q ss_pred             ccccccccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccccccccCCCCCCccHHHHH
Q psy4039         404 SSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRR  483 (588)
Q Consensus       404 ~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~l~~  483 (588)
                             .....+.|||.....       .+.+.=|||+|+++|..+--..|               +.-+..+|+.+..
T Consensus        98 -------~~~~~~~~pe~~~~~-------~te~~~IysLG~tLY~ALDygL~---------------e~eE~eLS~~LE~  148 (229)
T 2yle_A           98 -------AGEPPPVAGKLGYSQ-------CMETEVIESLGIIIYKALDYGLK---------------ENEERELSPPLEQ  148 (229)
T ss_dssp             ----------------CCSSSS-------SCHHHHHHHHHHHHHHHHTTTCC---------------TTEEECCCHHHHH
T ss_pred             -------ccccCCCChhhcccc-------chHHHHHHHHHHHHHHHhhcCCC---------------cccchhhCHHHHH
Confidence                   012256688875211       23567899999999999853222               1122467899999


Q ss_pred             HHHHhhhh-------------------------CCCCCCCHHHHHHHHhhhhh
Q psy4039         484 LVAKLLEN-------------------------DPSDRPSAELAATVCQLYLW  511 (588)
Q Consensus       484 Li~~~L~~-------------------------dP~~Rps~~e~l~~L~~~~~  511 (588)
                      ||..|..-                         .+..|++.+++++.+...+-
T Consensus       149 LL~~Mt~~~~d~~~~DeG~~~~~eg~~d~~~~~~~~~~~sl~~Vi~~C~~hl~  201 (229)
T 2yle_A          149 LIDHMANTVEADGSNDEGYEAAEEGLGDEDEKRKISAIRSYRDVMKLCAAHLP  201 (229)
T ss_dssp             HHHHHTTCCC--------------------CCSCCCCCCSHHHHHHHHHTTSS
T ss_pred             HHHHHHhcccccccccccccccccccccccccccccCcCCHHHHHHHHHhhcc
Confidence            99999755                         24688999999888875543

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=97.28  E-value=7.6e-05  Score=78.91  Aligned_cols=64  Identities=14%  Similarity=0.110  Sum_probs=54.0

Q ss_pred             HHhHHHHHHHHhhhhhhcCC---chhHHHhHHH------HHHhhhcCCCCcccccccccccCccccccccccccc
Q psy4039          57 YFQNARKLFVNSLLNRVTNS---MASDLRRKTI------QQLLYKDNSKPFLAFVGVSLASGTGILTNRVTNSMA  122 (588)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~------~~l~~~~~~~pf~~~~~~~~~~~~~~~~~~~~~~~~  122 (588)
                      +-.-++++|.+||.+|+|+.   |++||++|+|      ++|..|++.|||+|-+  +...++..||.+||...+
T Consensus       289 ~~~li~~lL~~dP~~R~~~~~~~~~~ei~~Hpff~~i~w~~l~~~~~~pp~~p~~--~~~~d~~~fd~~~~~~~~  361 (396)
T 4dc2_A          289 AASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNVDWDMMEQKQVVPPFKPNI--SGEFGLDNFDSQFTNEPV  361 (396)
T ss_dssp             HHHHHHHHTCSCTTTSTTCSTTTHHHHHHHSTTTTTCCHHHHHTTCSCCSCCCCC--CSSTTGGGSCHHHHTSCC
T ss_pred             HHHHHHHHhcCCHhHcCCCCCCCCHHHHhcCccccCCCHHHHHcCCCCCCCcCCC--CCccchhhcChhhccCCC
Confidence            34558899999999999974   8999999999      7899999999999987  445588889999977553

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=96.90  E-value=0.00033  Score=78.52  Aligned_cols=76  Identities=14%  Similarity=0.153  Sum_probs=50.8

Q ss_pred             HhHHHHHHHHhhhhhhcCC--chhHHHhHHH------HHHhhhcCCCCccccccccccc---Ccccccccccccccchhh
Q psy4039          58 FQNARKLFVNSLLNRVTNS--MASDLRRKTI------QQLLYKDNSKPFLAFVGVSLAS---GTGILTNRVTNSMASDLR  126 (588)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~------~~l~~~~~~~pf~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  126 (588)
                      -.-+++||.+||.+|+|.+  |++||++|+|      ++|..|++.|||.|-+.-...+   |++.||.++|...+.   
T Consensus       422 ~dLI~~lL~~dP~~Rl~~~~~ga~ei~~HpfF~~idW~~l~~~~~~pP~~P~~~~~~~~~~fD~~~fd~e~~~~~~~---  498 (689)
T 3v5w_A          422 RSLLEGLLQRDVNRRLGCLGRGAQEVKESPFFRSLDWQMVFLQKYPPPLIPPRGEVNAADAFDIGSFDEEDTKGIKL---  498 (689)
T ss_dssp             HHHHHHHTCSCGGGCTTCSSSTHHHHTTSGGGTTCCHHHHHTTCSCCSCCCCTTCSSTTBCCC---------CCCCC---
T ss_pred             HHHHHHHccCCHhHCCCCCCCCHHHHhcCccccCCCHHHHHcCCCCcCccCCCCCCCcCCCCCCccCCccccCCCCC---
Confidence            3458899999999999864  8999999999      8999999999999987654433   344555555544432   


Q ss_pred             HHhhhhhhcc
Q psy4039         127 RKTLQQLLYK  136 (588)
Q Consensus       127 ~~~~~~~~~~  136 (588)
                      ....++++.+
T Consensus       499 ~~~d~~~f~~  508 (689)
T 3v5w_A          499 LDSDQELYRN  508 (689)
T ss_dssp             CHHHHTTTTT
T ss_pred             CchHHHHHhC
Confidence            2234556666

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=96.86  E-value=0.0019  Score=68.49  Aligned_cols=32  Identities=16%  Similarity=0.247  Sum_probs=27.5

Q ss_pred             HhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccc
Q psy4039         357 NMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYT  394 (588)
Q Consensus       357 H~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~  394 (588)
                      +...++|+|++|.|||++.+     . ++|+||+.+..
T Consensus       230 ~~~~liHGDl~~~Nil~~~~-----~-~~lID~e~a~~  261 (420)
T 2pyw_A          230 RAQALIHGDLHTGSVMVTQD-----S-TQVIDPEFSFY  261 (420)
T ss_dssp             BCCEEECSCCSGGGEEECSS-----C-EEECCCTTCEE
T ss_pred             CCCeEEecCCCCCcEEEeCC-----C-CEEEeCccccc
Confidence            45789999999999999866     4 88999998865

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=96.80  E-value=0.00044  Score=71.74  Aligned_cols=65  Identities=9%  Similarity=0.052  Sum_probs=53.6

Q ss_pred             HHhHHHHHHHHhhhhhhcC---CchhHHHhHHH------HHHhhhcCCCCcccccccccccCcccccccccccccc
Q psy4039          57 YFQNARKLFVNSLLNRVTN---SMASDLRRKTI------QQLLYKDNSKPFLAFVGVSLASGTGILTNRVTNSMAS  123 (588)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~------~~l~~~~~~~pf~~~~~~~~~~~~~~~~~~~~~~~~~  123 (588)
                      +-.-++++|.+||.+|+|+   +|++||++|+|      ++|..|++.|||+|-+.  ...++..||.+|+...|.
T Consensus       251 ~~~li~~lL~~dP~~R~~~~~~~~~~~il~hp~f~~~~w~~l~~~~~~~p~~p~~~--~~~~~~~f~~~~~~~~~~  324 (353)
T 3txo_A          251 ATGILKSFMTKNPTMRLGSLTQGGEHAILRHPFFKEIDWAQLNHRQIEPPFRPRIK--SREDVSNFDPDFIKEEPV  324 (353)
T ss_dssp             HHHHHHHHTCSSGGGSTTSGGGTCTHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCC--STTCCTTSCHHHHTSCCC
T ss_pred             HHHHHHHHhhhCHHHccCCcccCCHHHHhhCCcccCCCHHHHhcCcCCCCccCCCC--CcccccccCcccccCCCc
Confidence            4456889999999999987   58899999999      78999999999999874  445777888888765543

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=96.70  E-value=0.00057  Score=70.38  Aligned_cols=63  Identities=16%  Similarity=0.111  Sum_probs=52.4

Q ss_pred             HHhHHHHHHHHhhhhhhcCC--chhHHHhHHH------HHHhhhcCCCCcccccccccccCcccccccccccc
Q psy4039          57 YFQNARKLFVNSLLNRVTNS--MASDLRRKTI------QQLLYKDNSKPFLAFVGVSLASGTGILTNRVTNSM  121 (588)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~------~~l~~~~~~~pf~~~~~~~~~~~~~~~~~~~~~~~  121 (588)
                      +-.-++++|.+||.+|+|++  +++||++|+|      ++|..|++.|||+|-+.  +..++.+|+.+|+...
T Consensus       232 ~~~li~~lL~~dP~~R~g~~~~~~~ei~~h~~f~~~~~~~~~~~~~~pp~~p~~~--~~~d~~~f~~~~~~~~  302 (337)
T 1o6l_A          232 AKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINWQDVVQKKLLPPFKPQVT--SEVDTRYFDDEFTAQS  302 (337)
T ss_dssp             HHHHHHHHTCSSTTTSTTCSTTTHHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCS--STTCCTTSCHHHHTSC
T ss_pred             HHHHHHHHhhcCHHHhcCCCCCCHHHHHcCCCcCCCCHHHHHhCCCCCCCCCCCC--CcchhhcccchhccCc
Confidence            34557899999999999876  8999999999      78999999999999874  4457778888886543

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=96.68  E-value=0.00041  Score=78.48  Aligned_cols=63  Identities=11%  Similarity=0.094  Sum_probs=53.2

Q ss_pred             HHhHHHHHHHHhhhhhhcCC--chhHHHhHHH------HHHhhhcCCCCcccccccccccCccccccccccccc
Q psy4039          57 YFQNARKLFVNSLLNRVTNS--MASDLRRKTI------QQLLYKDNSKPFLAFVGVSLASGTGILTNRVTNSMA  122 (588)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~------~~l~~~~~~~pf~~~~~~~~~~~~~~~~~~~~~~~~  122 (588)
                      +-.-++++|.+||.+|+|.+  +++||++|+|      ++|.+|++.|||+|-+.-   .++..||..||...+
T Consensus       569 ~~~li~~lL~~dP~~R~~~~~~~~~ei~~h~ff~~i~w~~l~~~~~~pp~~p~~~~---~~~~~f~~~~~~~~~  639 (674)
T 3pfq_A          569 AVAICKGLMTKHPGKRLGCGPEGERDIKEHAFFRYIDWEKLERKEIQPPYKPKASG---RNAENFDRFFTRHPP  639 (674)
T ss_dssp             HHHHHHHHSCSSSTTCTTCSTTHHHHHHSSGGGSSCCHHHHTTTCSCCSCCCBCCG---GGHHHHTTTTTSSCS
T ss_pred             HHHHHHHHccCCHHHCCCCCCCcHHHHhcCccccCCCHHHHHhCCCCCCCCCcCCC---CchhhcCchhccCCC
Confidence            44558899999999999885  8999999999      789999999999998743   577788988876554

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=96.62  E-value=0.0058  Score=61.41  Aligned_cols=28  Identities=25%  Similarity=0.259  Sum_probs=23.0

Q ss_pred             CceeccCCCCcEEEcCCCCCCCCceeeecccccc
Q psy4039         360 RTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSY  393 (588)
Q Consensus       360 ~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~  393 (588)
                      .++|+|+.+.||+.+ +     +.+.|+||..|.
T Consensus       174 ~l~HgDl~~~Nil~~-~-----~~~~lID~e~a~  201 (301)
T 3dxq_A          174 AACHCDPLCENFLDT-G-----ERMWIVDWEYSG  201 (301)
T ss_dssp             EEECSCCCGGGEEEC-S-----SCEEECCCTTCE
T ss_pred             eeeccCCCcCCEEEC-C-----CCEEEEeccccc
Confidence            589999999999943 3     467999999773

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=96.46  E-value=0.0011  Score=69.15  Aligned_cols=63  Identities=13%  Similarity=0.102  Sum_probs=42.2

Q ss_pred             HHhHHHHHHHHhhhhhhcCC-chhHHHhHHH------HHHhhhcCCCCcccccccccccCcccccccccccc
Q psy4039          57 YFQNARKLFVNSLLNRVTNS-MASDLRRKTI------QQLLYKDNSKPFLAFVGVSLASGTGILTNRVTNSM  121 (588)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------~~l~~~~~~~pf~~~~~~~~~~~~~~~~~~~~~~~  121 (588)
                      +-.-++++|.+||.+|+|.. +++||++|+|      ++|..|++.|||+|.+.  +..++..||.+|+...
T Consensus       266 ~~~li~~lL~~dp~~R~~~~~~~~~i~~h~~f~~~~w~~l~~~~~~pp~~p~~~--~~~d~~~f~~~~~~~~  335 (373)
T 2r5t_A          266 ARHLLEGLLQKDRTKRLGAKDDFMEIKSHVFFSLINWDDLINKKITPPFNPNVS--GPNDLRHFDPEFTEEP  335 (373)
T ss_dssp             HHHHHHHHTCSSGGGSTTTTTTHHHHHTSGGGTTCCHHHHHTTCSCCSCCCSCC--C---------------
T ss_pred             HHHHHHHHcccCHHhCCCCCCCHHHHhCCccccCCCHHHHHhCCCCCCCCCCCC--CcchhhhcCccccccc
Confidence            44568899999999999886 8899999999      78999999999999874  4447777888886543

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=96.45  E-value=0.00097  Score=67.78  Aligned_cols=44  Identities=20%  Similarity=0.324  Sum_probs=39.0

Q ss_pred             HHhHHHHHHHHhhhhhhcCC--chhHHHhHHH------HHHhhhcCCCCccc
Q psy4039          57 YFQNARKLFVNSLLNRVTNS--MASDLRRKTI------QQLLYKDNSKPFLA  100 (588)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~------~~l~~~~~~~pf~~  100 (588)
                      +-.-++++|.+||.+|+|+.  +++||++|+|      ++|.+|++.|||+|
T Consensus       253 ~~~li~~~L~~dP~~R~ta~~~~~~eil~Hp~f~~idw~~l~~~~~~pP~~P  304 (304)
T 3ubd_A          253 AQSLLRMLFKRNPANRLGAGPDGVEEIKRHSFFSTIDWNKLYRREIHPPFKP  304 (304)
T ss_dssp             HHHHHHHHTCSSGGGSTTCSTTTHHHHHTSGGGTTCCHHHHHTTCSCCSSCC
T ss_pred             HHHHHHHHcccCHHHCCCCCcCCHHHHHcCccccCCCHHHHHhCCCCcCcCC
Confidence            34558899999999999986  7899999998      78999999999986

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=96.43  E-value=0.011  Score=59.82  Aligned_cols=51  Identities=16%  Similarity=-0.036  Sum_probs=32.3

Q ss_pred             CeEEeeeecccCceeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhc
Q psy4039         197 DIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVE  266 (588)
Q Consensus       197 ~~~~~~~IG~G~fG~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~  266 (588)
                      ...-.+.|+.|....+|+....+..+++|+....                   .....+..|..+++.+.
T Consensus        23 ~~~~~~~i~~G~~n~~~~v~~~~g~~vlk~~~~~-------------------~~~~~l~~e~~~l~~L~   73 (322)
T 2ppq_A           23 SLTSYKGIAEGVENSNFLLHTTKDPLILTLYEKR-------------------VEKNDLPFFLGLMQHLA   73 (322)
T ss_dssp             CEEEEEEECC---EEEEEEEESSCCEEEEEECC----------------------CCHHHHHHHHHHHHH
T ss_pred             cceEeeccCCCcccceEEEEeCCccEEEEEeCCC-------------------CCHHHHHHHHHHHHHHH
Confidence            3445567888998999999887668999997421                   01234456788887773

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=96.43  E-value=0.014  Score=59.27  Aligned_cols=62  Identities=8%  Similarity=-0.105  Sum_probs=41.6

Q ss_pred             EeeeecccCceeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEEee
Q psy4039         200 IGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHF  279 (588)
Q Consensus       200 ~~~~IG~G~fG~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l~~  279 (588)
                      -.+.|+.|.+..+|+....+..++||+-...                    ....+..|...|+.+... ....+.+++.
T Consensus        40 ~~~~l~gG~~n~~y~v~~~~~~~vlK~~~~~--------------------~~~~~~~E~~~L~~L~~~-~~v~VP~vl~   98 (312)
T 3jr1_A           40 HKEKLYSGEMNEIWLINDEVQTVFVKINERS--------------------YRSMFRAEADQLALLAKT-NSINVPLVYG   98 (312)
T ss_dssp             EEEEECCSSSSEEEEEESSSCEEEEEEEEGG--------------------GHHHHHHHHHHHHHHHHT-TSSBCCCEEE
T ss_pred             eeEEeCCccceeeeEEEECCCeEEEEeCCcc--------------------cHHHHHHHHHHHHHHHhh-CCCCcceEEE
Confidence            4567899999999999888889999986321                    123456788888877422 1234455555


Q ss_pred             eee
Q psy4039         280 AFT  282 (588)
Q Consensus       280 ~~~  282 (588)
                      +..
T Consensus        99 ~~~  101 (312)
T 3jr1_A           99 IGN  101 (312)
T ss_dssp             EEE
T ss_pred             Eee
Confidence            544

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=96.40  E-value=0.035  Score=55.24  Aligned_cols=54  Identities=9%  Similarity=0.051  Sum_probs=39.1

Q ss_pred             CCeEEeeeecccCceeEEEEEEC-CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVE  266 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~-g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~  266 (588)
                      ....-...+|.|..+.||+.+.. |+.|.||+-.....                 .....+..|...|+.+.
T Consensus        15 ~~v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~-----------------~~~~~~~~Ea~~L~~L~   69 (288)
T 3f7w_A           15 REVAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAP-----------------ALDGLFRAEALGLDWLG   69 (288)
T ss_dssp             CCEEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCC-----------------CCTTHHHHHHHHHHHHT
T ss_pred             CCeEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCc-----------------chhhHHHHHHHHHHHHH
Confidence            34556788999999999999986 78999998632111                 12334677988888874

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=96.39  E-value=0.00067  Score=70.35  Aligned_cols=61  Identities=11%  Similarity=0.096  Sum_probs=49.0

Q ss_pred             HHhHHHHHHHHhhhhhhcCC--chhHHHhHHH------HHHhhhcCCCCcccccccccccCccccccccccc
Q psy4039          57 YFQNARKLFVNSLLNRVTNS--MASDLRRKTI------QQLLYKDNSKPFLAFVGVSLASGTGILTNRVTNS  120 (588)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~------~~l~~~~~~~pf~~~~~~~~~~~~~~~~~~~~~~  120 (588)
                      +-.-++++|.+||.+|+|.+  +++||++|+|      ++|..|++.|||+|.+.-.   ++..||..|+..
T Consensus       248 ~~~li~~lL~~dP~~R~~~~~~~~~~i~~h~~f~~~~w~~l~~~~~~~p~~p~~~~~---~~~~f~~~~~~~  316 (353)
T 2i0e_A          248 AVAICKGLMTKHPGKRLGCGPEGERDIKEHAFFRYIDWEKLERKEIQPPYKPKACGR---NAENFDRFFTRH  316 (353)
T ss_dssp             HHHHHHHHTCSCTTSCTTCSTTHHHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCCCC-----CHHHHHHHHS
T ss_pred             HHHHHHHHhhcCHHHcCCCCCCCHHHHhcCccccCCCHHHHHhCCCCCCcCCCCCCc---chhhccchhccC
Confidence            44568899999999999886  8999999999      7899999999999987432   666777777543

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=96.07  E-value=0.015  Score=59.13  Aligned_cols=35  Identities=20%  Similarity=0.302  Sum_probs=26.6

Q ss_pred             CCceeccCCCCcEEEcCCCCCCCCceeeeccccccc
Q psy4039         359 HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYT  394 (588)
Q Consensus       359 ~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~  394 (588)
                      ..++|+|+.+.|||++.+..+. ..+.|+||+.+..
T Consensus       183 ~~lvHgD~~~~Nil~~~~~~~~-~~~~lIDf~~a~~  217 (333)
T 3csv_A          183 MVFVHRDFHAQNLLWLPEREGL-ARVGVIDFQDAKL  217 (333)
T ss_dssp             CEEECSCCSGGGEEECTTSCGG-GGEEECCCTTCEE
T ss_pred             CeeEeCCcCcccEEeccCcCCC-CCeEEEeCCCcCc
Confidence            5799999999999998642111 3678999998754

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=95.92  E-value=0.0034  Score=66.96  Aligned_cols=61  Identities=18%  Similarity=0.151  Sum_probs=48.0

Q ss_pred             HHhHHHHHHHHhhhhhhcCC--chhHHHhHHH------HHHhhhcCCCCcccccccccccCcccccccccc
Q psy4039          57 YFQNARKLFVNSLLNRVTNS--MASDLRRKTI------QQLLYKDNSKPFLAFVGVSLASGTGILTNRVTN  119 (588)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~------~~l~~~~~~~pf~~~~~~~~~~~~~~~~~~~~~  119 (588)
                      +-.-++++|..||.+|++++  .++||.+|+|      ++++.|++.|||+|-+.  +.+++.+||++||.
T Consensus       376 ~~~li~~~L~~dP~~R~~~~~~t~~ell~hp~f~~~~~~~~~~~~~~pp~~p~~~--~~~~~~~~~~~~~~  444 (446)
T 4ejn_A          376 AKSLLSGLLKKDPKQRLGGGSEDAKEIMQHRFFAGIVWQHVYEKKLSPPFKPQVT--SETDTRYFDEEFTA  444 (446)
T ss_dssp             HHHHHHHHTCSSTTTSTTCSTTTHHHHHTSGGGTTCCHHHHHTTCSCCSCCCSCS--STTCCTTC------
T ss_pred             HHHHHHHHcccCHHHhCCCCCCCHHHHHhCccccCCCHHHHhhCcCCCCccCCCC--Cccchhhcchhhhc
Confidence            44568899999999999776  8999999999      88999999999999884  55688899999874

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=95.71  E-value=0.0038  Score=64.27  Aligned_cols=62  Identities=13%  Similarity=0.122  Sum_probs=49.8

Q ss_pred             HHhHHHHHHHHhhhhhhcCC---chhHHHhHHH------HHHhhhcCCCCcccccccccccCccccccccccc
Q psy4039          57 YFQNARKLFVNSLLNRVTNS---MASDLRRKTI------QQLLYKDNSKPFLAFVGVSLASGTGILTNRVTNS  120 (588)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~------~~l~~~~~~~pf~~~~~~~~~~~~~~~~~~~~~~  120 (588)
                      +..-++++|..||.+|+|+.   |++||++|+|      +.|..+++.|||++.+.-  ..++..|+..|+..
T Consensus       246 ~~~li~~lL~~dP~~R~~~~~~~~~~~i~~hp~f~~~~w~~~~~~~~~~p~~p~~~~--~~~~~~~~~~~~~~  316 (345)
T 3a8x_A          246 AASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNVDWDMMEQKQVVPPFKPNISG--EFGLDNFDSQFTNE  316 (345)
T ss_dssp             HHHHHHHHTCSSTTTSTTCCTTTHHHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCCT--TTCGGGSCHHHHTS
T ss_pred             HHHHHHHHhcCCHhHCCCCCCcCCHHHHhcCCccCCCCHHHHHhCCCCCCcCCCCCC--cchhhhcCcccccC
Confidence            34557889999999999873   7899999999      788899999999998743  44666777777543

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=95.55  E-value=0.0054  Score=62.40  Aligned_cols=67  Identities=15%  Similarity=0.221  Sum_probs=40.7

Q ss_pred             HHhHHHHHHHHhhhhhhcCC--chhHHHhHHH------HHHhhhcCCCCcccccccccccCcccccccccccccchh
Q psy4039          57 YFQNARKLFVNSLLNRVTNS--MASDLRRKTI------QQLLYKDNSKPFLAFVGVSLASGTGILTNRVTNSMASDL  125 (588)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~------~~l~~~~~~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (588)
                      +-.-++++|..||.+|+|.+  .++||++|+|      +++..+++.|||++.+....  +...|+..++...|.++
T Consensus       248 ~~~li~~~L~~dp~~R~~~~~~~~~e~l~hp~f~~~~~~~~~~~~~~~p~~p~~~~~~--~~~~~~~~~~~~~~~~~  322 (327)
T 3a62_A          248 ARDLLKKLLKRNAASRLGAGPGDAGEVQAHPFFRHINWEELLARKVEPPFKPLLQSEE--DVSQFDSKFTRQTPVDS  322 (327)
T ss_dssp             HHHHHHHHSCSCGGGSTTSSTTTHHHHHHSGGGSSCCHHHHHTTCSCCSCCCC------------------------
T ss_pred             HHHHHHHHHhcCHhhccCCCCCCHHHHHcCCcccCCCHHHHhhccCCCCCCCCcCChh--hhhhcchhhhccccCCC
Confidence            45668889999999999887  8999999999      78899999999999885444  55567777766555443

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=95.36  E-value=0.0065  Score=62.69  Aligned_cols=59  Identities=15%  Similarity=0.138  Sum_probs=47.6

Q ss_pred             HHhHHHHHHHHhhhhhhcCC--chhHHHhHHH------HHHhhhcCCCCcccccccccccCccccccccc
Q psy4039          57 YFQNARKLFVNSLLNRVTNS--MASDLRRKTI------QQLLYKDNSKPFLAFVGVSLASGTGILTNRVT  118 (588)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~------~~l~~~~~~~pf~~~~~~~~~~~~~~~~~~~~  118 (588)
                      +..-++++|..||.+|+|+.  +++||++|+|      .+|..+++.|||.|-+.-..  ++..|+ .|+
T Consensus       265 ~~~li~~lL~~dp~~R~~~~~~~~~ei~~h~~f~~~~w~~~~~~~~~~p~~p~~~~~~--~~~~f~-~~~  331 (350)
T 1rdq_E          265 LKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGPG--DTSNFD-DYE  331 (350)
T ss_dssp             HHHHHHHHSCSCTTTCTTSSTTTTHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCCSTT--CCTTSC-CCC
T ss_pred             HHHHHHHHhhcCHHhccCCccCCHHHHHhCcCcCCCCHHHHhhccCCCCCCCCCCCcc--cccccc-ccc
Confidence            45668899999999999864  8999999999      78999999999999875333  555666 443

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=95.23  E-value=0.032  Score=57.65  Aligned_cols=27  Identities=33%  Similarity=0.422  Sum_probs=23.2

Q ss_pred             CceeccCCCCcEEEcCCCCCCCCceeeeccccc
Q psy4039         360 RTAHRDLKSDNILLDCSEDNTCPQLVITDFGSS  392 (588)
Q Consensus       360 ~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla  392 (588)
                      +++|+|+.+.|||++.+      .+.|+||..|
T Consensus       213 ~l~HgDl~~~Nil~~~~------~~~lID~e~a  239 (369)
T 3c5i_A          213 VFCHNDLQENNIINTNK------CLRLIDFEYS  239 (369)
T ss_dssp             EEECSCCCGGGEEECC-------CEEECCCTTC
T ss_pred             EEEeCCCCcccEEecCC------cEEEEEecCC
Confidence            68999999999999754      4789999977

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=95.08  E-value=0.058  Score=57.27  Aligned_cols=27  Identities=11%  Similarity=0.156  Sum_probs=22.0

Q ss_pred             eeeecccCceeEEEEEEC---------CeeEEEEEE
Q psy4039         201 GKFIAKGTNAVVYEATFR---------GVEYALKMM  227 (588)
Q Consensus       201 ~~~IG~G~fG~Vy~a~~~---------g~~vAVK~i  227 (588)
                      .+.|+.|-...||++...         +..|.+|+.
T Consensus        78 v~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~  113 (429)
T 1nw1_A           78 ISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVY  113 (429)
T ss_dssp             EEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEE
T ss_pred             EEEeCCCcccceEEEEeCCCccccCCCCceEEEEEe
Confidence            456888889999999875         468999986

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=94.80  E-value=0.063  Score=56.05  Aligned_cols=32  Identities=34%  Similarity=0.518  Sum_probs=25.1

Q ss_pred             CceeccCCCCcEEEcCCCCCCCCceeeeccccc
Q psy4039         360 RTAHRDLKSDNILLDCSEDNTCPQLVITDFGSS  392 (588)
Q Consensus       360 ~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla  392 (588)
                      .++|+|+.+.|||++.+.... +.+.|+||..|
T Consensus       221 ~~~H~D~~~~Nil~~~~~~~~-~~~~~IDwE~a  252 (379)
T 3feg_A          221 VFCHNDIQEGNILLLSEPENA-DSLMLVDFEYS  252 (379)
T ss_dssp             EEECSCCCGGGEEEESCC----CCEEECCCTTC
T ss_pred             EEEcCCCCCCeEEEcCCCCcc-CcEEEEecccC
Confidence            689999999999998652111 47889999987

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=94.64  E-value=0.0064  Score=62.64  Aligned_cols=62  Identities=21%  Similarity=0.215  Sum_probs=32.3

Q ss_pred             HHhHHHHHHHHhhhhhhcCCchhHHHhHHH------HHHhhhcCCCCcccccccccccCccccccccccccc
Q psy4039          57 YFQNARKLFVNSLLNRVTNSMASDLRRKTI------QQLLYKDNSKPFLAFVGVSLASGTGILTNRVTNSMA  122 (588)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~~~~~pf~~~~~~~~~~~~~~~~~~~~~~~~  122 (588)
                      +-.-++++|.+||.+|+|..  +||++|+|      ++|.+|++.|||+|-+.-  ..+++.|+.+|+...+
T Consensus       245 ~~~li~~lL~~dp~~R~~~~--~~i~~hp~f~~~~w~~l~~~~~~~p~~p~~~~--~~d~~~f~~~~~~~~~  312 (345)
T 1xjd_A          245 AKDLLVKLFVREPEKRLGVR--GDIRQHPLFREINWEELERKEIDPPFRPKVKS--PFDCSNFDKEFLNEKP  312 (345)
T ss_dssp             HHHHHHHHSCSSGGGSBTTB--SCGGGSGGGTTCCHHHHHTTCSCC--------------------------
T ss_pred             HHHHHHHHhcCCHhHcCCCh--HHHHcCccccCCCHHHHhhCCCCCCcCCCCCC--cchhhhcchhhcccCc
Confidence            34568889999999999653  49999999      789999999999998743  3467778887765443

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=94.54  E-value=0.2  Score=53.67  Aligned_cols=27  Identities=11%  Similarity=0.272  Sum_probs=21.1

Q ss_pred             eeeecccCceeEEEEEECC--eeEEEEEE
Q psy4039         201 GKFIAKGTNAVVYEATFRG--VEYALKMM  227 (588)
Q Consensus       201 ~~~IG~G~fG~Vy~a~~~g--~~vAVK~i  227 (588)
                      .+.|+.|-...+|++...+  ..|++|+.
T Consensus       113 i~~lsgG~tN~~y~v~~~~~~~~~vLRi~  141 (458)
T 2qg7_A          113 FQIINGGITNILIKVKDMSKQAKYLIRLY  141 (458)
T ss_dssp             EEEECC--CEEEEEEEETTTTEEEEEEEE
T ss_pred             EEEcCCCeEeEEEEEEECCCCceEEEEEC
Confidence            4568889899999999876  88999986

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=93.53  E-value=0.029  Score=56.89  Aligned_cols=57  Identities=16%  Similarity=0.198  Sum_probs=41.3

Q ss_pred             HHhHHHHHHHHhhhhhhcCC--chhHHHhHHH------HHHhhhcCCCCcccccccccccCccccc
Q psy4039          57 YFQNARKLFVNSLLNRVTNS--MASDLRRKTI------QQLLYKDNSKPFLAFVGVSLASGTGILT  114 (588)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~------~~l~~~~~~~pf~~~~~~~~~~~~~~~~  114 (588)
                      +-.-+++++.+||.+|+|+.  +++||++|+|      ++|..+++.|||.|-+.- ...+++.|+
T Consensus       230 ~~~li~~lL~~dp~~R~~~~~~~~~~i~~hp~f~~~~~~~~~~~~~~~p~~p~~~~-~~~d~~~f~  294 (318)
T 1fot_A          230 VKDLLSRLITRDLSQRLGNLQNGTEDVKNHPWFKEVVWEKLLSRNIETPYEPPIQQ-GQGDTSQFD  294 (318)
T ss_dssp             HHHHHHHHTCSCTTTCTTSSTTTTHHHHTSGGGSSCCHHHHHTTCSCCSCCCCC------------
T ss_pred             HHHHHHHHhccCHHHcCCCcCCCHHHHhcCccccCCCHHHHHhCCCCCCCCCCcCC-CccchhhcC
Confidence            44568899999999999876  8999999999      789999999999998742 223444444

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=92.80  E-value=0.041  Score=60.76  Aligned_cols=47  Identities=13%  Similarity=0.087  Sum_probs=40.8

Q ss_pred             HHhHHHHHHHHhhhhhhcCC--chhHHHhHHH------HHHhhhcCCCCcccccc
Q psy4039          57 YFQNARKLFVNSLLNRVTNS--MASDLRRKTI------QQLLYKDNSKPFLAFVG  103 (588)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~------~~l~~~~~~~pf~~~~~  103 (588)
                      +-.-++++|..||.+|+|.+  +++||++|+|      ++|..+.+.|||+|-+.
T Consensus       416 ~~dLI~~lL~~dP~~R~g~~~~sa~eil~HpfF~~i~w~~l~~~~~~pp~~p~~~  470 (576)
T 2acx_A          416 ARSLCSQLLCKDPAERLGCRGGSAREVKEHPLFKKLNFKRLGAGMLEPPFKPDPQ  470 (576)
T ss_dssp             HHHHHHHHTCSSGGGSTTCSSSHHHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCC
T ss_pred             HHHHHHHhccCCHHHcCCCCCCCHHHHHhChhhccCCHHHHhcCCCCCCCCCCcc
Confidence            34457889999999999876  8999999999      78999999999999764

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=92.51  E-value=0.029  Score=59.29  Aligned_cols=53  Identities=21%  Similarity=0.219  Sum_probs=37.8

Q ss_pred             hHHHHHHHHhhhhhhcCCchhHHHhHHH------HHHhhhcCCCCcccccccccccCccccccc
Q psy4039          59 QNARKLFVNSLLNRVTNSMASDLRRKTI------QQLLYKDNSKPFLAFVGVSLASGTGILTNR  116 (588)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~~~~~pf~~~~~~~~~~~~~~~~~~  116 (588)
                      .-++++|. +|.+|+|.++++||++|+|      ++|  ++..|||.|-+.  ..+++.+||..
T Consensus       304 dli~~lL~-~p~~Rlgr~~~~ei~~Hpff~~i~w~~l--~~~~~p~~p~~~--~~~d~~~f~~~  362 (412)
T 2vd5_A          304 DFIQRLLC-PPETRLGRGGAGDFRTHPFFFGLDWDGL--RDSVPPFTPDFE--GATDTCNFDLV  362 (412)
T ss_dssp             HHHHTTSS-CGGGCTTTTTHHHHHTSGGGTTCCSTTS--TTSCCSCCCC-------CCSSCC--
T ss_pred             HHHHHHcC-ChhhcCCCCCHHHHhcCCCcCCCCHHHH--hhcCCCCCCcCC--CcccccccCcc
Confidence            44677787 9999998889999999999      455  357899999874  44577777653

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=92.44  E-value=0.051  Score=59.60  Aligned_cols=48  Identities=17%  Similarity=0.110  Sum_probs=41.4

Q ss_pred             HHhHHHHHHHHhhhhhhcCC--chhHHHhHHH------HHHhhhcCCCCccccccc
Q psy4039          57 YFQNARKLFVNSLLNRVTNS--MASDLRRKTI------QQLLYKDNSKPFLAFVGV  104 (588)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~------~~l~~~~~~~pf~~~~~~  104 (588)
                      +-.-++++|.+||.+|+|..  +++||++|+|      ++|..+.+.|||.|-+..
T Consensus       420 ~~~li~~lL~~dP~~R~~~~~~~a~ei~~Hpff~~i~w~~l~~~~~~pp~~P~~~~  475 (543)
T 3c4z_A          420 SKDFCEALLQKDPEKRLGFRDGSCDGLRTHPLFRDISWRQLEAGMLTPPFVPDSRT  475 (543)
T ss_dssp             HHHHHHHHSCSSGGGSCCCBTTBSHHHHTSGGGTTCCHHHHHTTCSCCSCCCCSSS
T ss_pred             HHHHHHHhccCCHhHCCCCcccCHHHHHcCccccCCCHHHHHcCCCCCCCCCCccc
Confidence            44568889999999999875  7899999999      789999999999997653

>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}

Probab=91.92  E-value=0.33  Score=51.37  Aligned_cols=27  Identities=30%  Similarity=0.496  Sum_probs=23.3

Q ss_pred             CceeccCCCCcEEEcCCCCCCCCceeeeccccc
Q psy4039         360 RTAHRDLKSDNILLDCSEDNTCPQLVITDFGSS  392 (588)
Q Consensus       360 ~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla  392 (588)
                      .++|+|+.+.||+ +.+     ..+.|+||..|
T Consensus       263 ~~~H~D~~~~N~l-~~~-----~~~~~IDwe~a  289 (424)
T 3mes_A          263 VFAHNDLQENNLL-QTQ-----NNIRMIDYEYS  289 (424)
T ss_dssp             EEECSCCCGGGEE-ECS-----SCEEECCCTTC
T ss_pred             eEECCCCCcccee-cCC-----CcEEEEecccC
Confidence            5899999999999 544     67899999987

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=91.44  E-value=0.099  Score=54.57  Aligned_cols=45  Identities=18%  Similarity=0.162  Sum_probs=39.3

Q ss_pred             HHhHHHHHHHHhhhhhhcCCchhHHHhHHH------HHHhhhcCCCCcccccc
Q psy4039          57 YFQNARKLFVNSLLNRVTNSMASDLRRKTI------QQLLYKDNSKPFLAFVG  103 (588)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~~~~~pf~~~~~  103 (588)
                      +-.-++++|..||.+|+|  .+++|++|+|      ++++.|++.|||.|-.+
T Consensus       247 ~~~li~~lL~~dP~~R~s--~~~~l~~hp~f~~~~w~~~~~~~~~p~~~p~~~  297 (384)
T 4fr4_A          247 MVSLLKKLLEPNPDQRFS--QLSDVQNFPYMNDINWDAVFQKRLIPGFIPNKG  297 (384)
T ss_dssp             HHHHHHHHSCSSGGGSCC--SHHHHHTSGGGTTCCHHHHHTTCSCCCCCCSCC
T ss_pred             HHHHHHHHhcCCHhHhcc--cHHHHHcChhhhcCCHHHHHhCCCCCCCCCCCC
Confidence            345578899999999995  4899999999      89999999999999864

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=90.29  E-value=0.12  Score=54.56  Aligned_cols=59  Identities=8%  Similarity=0.035  Sum_probs=44.6

Q ss_pred             HHhHHHHHHHHhhhhhhcCCchhHHHhHHH------HHHhhhcCCCCcccccccccccCccccccccc
Q psy4039          57 YFQNARKLFVNSLLNRVTNSMASDLRRKTI------QQLLYKDNSKPFLAFVGVSLASGTGILTNRVT  118 (588)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~~~~~pf~~~~~~~~~~~~~~~~~~~~  118 (588)
                      +-.-++++|. ++..|+|..+++||++|+|      +.+..+++.|||+|-+.  +..++.+||...+
T Consensus       304 ~~~li~~lL~-~~~~rlgR~~~~ei~~Hp~f~~~~w~~~~~~~~~~p~~p~~~--~~~d~~~fd~~~~  368 (410)
T 3v8s_A          304 AKNLICAFLT-DREVRLGRNGVEEIKRHLFFKNDQWAWETLRDTVAPVVPDLS--SDIDTSNFDDLEE  368 (410)
T ss_dssp             HHHHHHHHSS-CGGGCTTSSCHHHHHTSGGGCCSSCCSTTGGGSCCSCCCCCS--STTCCTTSCCCCS
T ss_pred             HHHHHHHHcc-ChhhhCCCCCHHHHhcCccccCCCHHHHhhcccCCCCCCcCC--CccchhhcCCccc
Confidence            3344677777 4556887679999999999      46788999999999874  4457777776553

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=88.81  E-value=0.11  Score=55.24  Aligned_cols=54  Identities=13%  Similarity=0.287  Sum_probs=38.3

Q ss_pred             HHHHHHHhhhhhhcCCchhHHHhHHH------HHHhhhcCCCCcccccccccccCcccccccccc
Q psy4039          61 ARKLFVNSLLNRVTNSMASDLRRKTI------QQLLYKDNSKPFLAFVGVSLASGTGILTNRVTN  119 (588)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~~~~~pf~~~~~~~~~~~~~~~~~~~~~  119 (588)
                      +++||..+ .+|++..+++||++|+|      ++|  +++.|||.|-+.-  .+++..||..++.
T Consensus       317 i~~lL~~~-~~r~~r~~~~eil~Hpff~~i~w~~l--~~~~~p~~P~~~~--~~d~~~fd~~~~~  376 (437)
T 4aw2_A          317 IRRLICSR-EHRLGQNGIEDFKKHPFFSGIDWDNI--RNCEAPYIPEVSS--PTDTSNFDVDDDC  376 (437)
T ss_dssp             HHTTSSCG-GGCTTTTTTHHHHTSGGGTTCCTTTG--GGSCCSCCCCCSS--TTCCTTSCCC---
T ss_pred             HHHHhccc-ccccCCCCHHHHhCCCccCCCCHHHH--hhCCCCCCCcCCC--ccchhhcCCcccc
Confidence            45555544 57887779999999999      455  6799999998854  4467777776643

>2ltn_B PEA lectin, beta chain; 1.70A {Pisum sativum} SCOP: b.29.1.1 PDB: 1hkd_B 1rin_B* 1ofs_B* 1bqp_B* 1loe_B 1loa_B* 1loc_B* 1lod_B* 1lob_B 1lof_B* 1log_B* 1lof_D* 1les_B* 2b7y_B* 1lgc_B* 1lgb_B* 1len_B 1lem_B 2lal_B

Probab=88.65  E-value=0.11  Score=37.79  Aligned_cols=20  Identities=20%  Similarity=0.273  Sum_probs=16.7

Q ss_pred             CcccccccccccCcccccccc
Q psy4039          97 PFLAFVGVSLASGTGILTNRV  117 (588)
Q Consensus        97 pf~~~~~~~~~~~~~~~~~~~  117 (588)
                      |..+|||||+|||. ..+.|+
T Consensus        17 ~e~v~VGFSAsTG~-~~~~h~   36 (52)
T 2ltn_B           17 PEWVRIGFSATTGA-EYAAHE   36 (52)
T ss_dssp             CSEEEEEEEEECCS-SCCEEE
T ss_pred             CceEEEEEEeccCC-cceeEE
Confidence            57999999999998 456676

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=86.27  E-value=0.38  Score=49.08  Aligned_cols=47  Identities=15%  Similarity=0.234  Sum_probs=41.1

Q ss_pred             HHhHHHHHHHHhhhhhhcCC--chhHHHhHHH------HHHhhhcCCCCcccccc
Q psy4039          57 YFQNARKLFVNSLLNRVTNS--MASDLRRKTI------QQLLYKDNSKPFLAFVG  103 (588)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~------~~l~~~~~~~pf~~~~~  103 (588)
                      +-.-++++|..||.+|.+.+  .++||++|+|      ++|..+++.|||++.+.
T Consensus       293 ~~~li~~~L~~dP~~R~~~~~~s~~ell~h~~f~~~~~~~l~~~~~~~p~~p~~~  347 (355)
T 1vzo_A          293 AKDLIQRLLMKDPKKRLGCGPRDADEIKEHLFFQKINWDDLAAKKVPAPFKPVIR  347 (355)
T ss_dssp             HHHHHHHHTCSSGGGSTTSSTTTHHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCC
T ss_pred             HHHHHHHHhhhCHHHhcCCCCCCHHHHHcCcchhcCChhHhhhccCCCCCCCccc
Confidence            34567889999999999877  8999999999      78899999999999873

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=83.46  E-value=0.77  Score=45.95  Aligned_cols=29  Identities=21%  Similarity=0.256  Sum_probs=24.0

Q ss_pred             CCceeccCCCCcEEEcCCCCCCCCceeeeccccccc
Q psy4039         359 HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYT  394 (588)
Q Consensus       359 ~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~  394 (588)
                      ..++|+|+++.|||++ +      .+.|+||+.+..
T Consensus       195 ~~l~HgD~~~~Nil~~-~------~~~lIDfe~a~~  223 (328)
T 1zyl_A          195 VLRLHGDCHAGNILWR-D------GPMFVDLDDARN  223 (328)
T ss_dssp             CEECCSSCSGGGEEES-S------SEEECCCTTCCE
T ss_pred             eeeeeCCCCcccEeEc-C------CCEEEECCCCCc
Confidence            4689999999999997 3      467999997743

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=80.96  E-value=0.92  Score=46.12  Aligned_cols=31  Identities=19%  Similarity=0.363  Sum_probs=26.4

Q ss_pred             CCceeccCCCCcEEEcCCCCCCCCceeeeccccccc
Q psy4039         359 HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYT  394 (588)
Q Consensus       359 ~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~  394 (588)
                      .+++|+|+.+.||+++.+     +.+.|+||+.+..
T Consensus       206 ~~~~HgD~~~~N~l~~~~-----~~~~~iD~e~~~~  236 (339)
T 3i1a_A          206 YVLCHSDIHAGNVLVGNE-----ESIYIIDWDEPML  236 (339)
T ss_dssp             CEEECSCCCGGGEEECGG-----GCEEECCCSSCEE
T ss_pred             ceeEeCCCCcCCEEEeCC-----CeEEEEECCCCee
Confidence            479999999999999866     5788999987754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	588
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	1e-31
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	1e-29
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	1e-28
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	3e-28
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	7e-28
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	8e-28
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	3e-27
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	2e-26
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	1e-25
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	2e-25
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	2e-25
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	4e-25
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	6e-25
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	8e-25
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	9e-25
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	1e-24
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	1e-24
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	4e-24
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	5e-24
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	7e-24
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	1e-23
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	1e-23
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	2e-23
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	2e-23
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	3e-23
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	6e-23
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	2e-22
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	2e-22
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	3e-22
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	3e-22
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	3e-22
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	4e-22
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	5e-22
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	6e-22
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	6e-22
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	9e-22
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	1e-21
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	3e-21
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	3e-21
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	4e-21
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	4e-21
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	5e-21
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	1e-20
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	1e-20
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	1e-20
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	5e-20
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	2e-19
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	3e-19
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	6e-19
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	9e-19
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	1e-17
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	1e-17
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	2e-17
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	5e-17
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	5e-17
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	2e-16
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	2e-16
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	4e-16
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	3e-14
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	4e-13
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	5e-12
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	8e-10
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	2e-08

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (305), Expect = 1e-31
 Identities = 66/316 (20%), Positives = 113/316 (35%), Gaps = 73/316 (23%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLR 255
             I +G+ I  G+   VY+  + G + A+KM+       N  A      +          
Sbjct: 8   GQITVGQRIGSGSFGTVYKGKWHG-DVAVKML-------NVTAPTPQQLQAF-------- 51

Query: 256 LNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSL 315
            NE  ++        H N+++                               GY     L
Sbjct: 52  KNEVGVLRKTR----HVNILLFM-----------------------------GYSTAPQL 78

Query: 316 FILMKKY--NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
            I+  ++   + L ++L     +  M + + +  Q  +G+ +L+     HRDLKS+NI L
Sbjct: 79  AIVT-QWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFL 137

Query: 374 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALAT-PGLFSFV 432
                     + I DFG +                 L G++  MAPEV        +SF 
Sbjct: 138 HED-----LTVKIGDFGLATVKSRWSGSHQFEQ---LSGSILWMAPEVIRMQDKNPYSF- 188

Query: 433 NYSKSDAWTAGTVAYEIFGHDNPFY--------QSARNTDYEVNALPQLNTNVPEVMRRL 484
              +SD +  G V YE+     P+                Y    L ++ +N P+ M+RL
Sbjct: 189 ---QSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKRL 245

Query: 485 VAKLLENDPSDRPSAE 500
           +A+ L+    +RP   
Sbjct: 246 MAECLKKKRDERPLFP 261

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  116 bits (291), Expect = 1e-29
 Identities = 62/314 (19%), Positives = 113/314 (35%), Gaps = 60/314 (19%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKP 253
           ++ +  + + +G ++VV     +    EYA+K++      S S   ++ + +        
Sbjct: 3   ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREAT------ 56

Query: 254 LRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNM 313
             L E  ++  V     HPN++ +   +                              N 
Sbjct: 57  --LKEVDILRKVSG---HPNIIQLKDTYET----------------------------NT 83

Query: 314 SLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNIL 372
             F++       +L +YL E+   LS  E   +   LLE +  L+     HRDLK +NIL
Sbjct: 84  FFFLVFDLMKKGELFDYLTEK-VTLSEKETRKIMRALLEVICALHKLNIVHRDLKPENIL 142

Query: 373 LDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV 432
           LD         + +TDFG S     G  ++      E+ G  + +APE+   +       
Sbjct: 143 LDDD-----MNIKLTDFGFSCQLDPGEKLR------EVCGTPSYLAPEIIECSMNDNHPG 191

Query: 433 NYSKSDAWTAGTVAYEI------FGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVA 486
              + D W+ G + Y +      F H                       +  + ++ LV+
Sbjct: 192 YGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMSGNYQFGSPEWDDYSDTVKDLVS 251

Query: 487 KLLENDPSDRPSAE 500
           + L   P  R +AE
Sbjct: 252 RFLVVQPQKRYTAE 265

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (282), Expect = 1e-28
 Identities = 57/311 (18%), Positives = 109/311 (35%), Gaps = 70/311 (22%)

Query: 195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRK 252
           ++D +IG+ + KG    VY A  +      ALK++        +      +  +L     
Sbjct: 5   LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVL------FKAQLEKAGVEHQL----- 53

Query: 253 PLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRN 312
                E  + + +     HPN++ ++  F D                             
Sbjct: 54  ---RREVEIQSHLR----HPNILRLYGYFHD----------------------------A 78

Query: 313 MSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNIL 372
             ++++++           ++ ++          T+L   +++ +  R  HRD+K +N+L
Sbjct: 79  TRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKRVIHRDIKPENLL 138

Query: 373 LDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV 432
           L  +      +L I DFG S    S              G +  + PE+           
Sbjct: 139 LGSA-----GELKIADFGWSVHAPSSRRTTLC-------GTLDYLPPEMIEGRM------ 180

Query: 433 NYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVAKLL 489
            +  K D W+ G + YE      PF  +     Y+            V E  R L+++LL
Sbjct: 181 -HDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEGARDLISRLL 239

Query: 490 ENDPSDRPSAE 500
           +++PS RP   
Sbjct: 240 KHNPSQRPMLR 250

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score =  114 bits (285), Expect = 3e-28
 Identities = 61/330 (18%), Positives = 111/330 (33%), Gaps = 79/330 (23%)

Query: 185 ETLPDVDDVKVDDI----QIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHA 238
           +  P   ++K D +     I + +  G   VV+  T R  G  +A K +     +     
Sbjct: 11  QYYPQPVEIKHDHVLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETV 70

Query: 239 ILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSA 298
                              E   M+ +     HP +V +H AF D               
Sbjct: 71  -----------------RKEIQTMSVLR----HPTLVNLHDAFED--------------- 94

Query: 299 LPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLN 357
                        +  + ++ +     +L   + +   ++S  E V    Q+ +G+ H++
Sbjct: 95  -------------DNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMH 141

Query: 358 MHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALM 417
            +   H DLK +NI+      N   +L + DFG +        +    +     G     
Sbjct: 142 ENNYVHLDLKPENIMFTTKRSN---ELKLIDFGLTA------HLDPKQSVKVTTGTAEFA 192

Query: 418 APEVALATPGLFSFVNYS-KSDAWTAGTVAYEI------FGHDNPFYQSARNTDYEVNAL 470
           APEVA   P           +D W+ G ++Y +      FG +N           + N  
Sbjct: 193 APEVAEGKP-------VGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDWNMD 245

Query: 471 PQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
               + + E  +  + KLL  DP+ R +  
Sbjct: 246 DSAFSGISEDGKDFIRKLLLADPNTRMTIH 275

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (276), Expect = 7e-28
 Identities = 60/315 (19%), Positives = 104/315 (33%), Gaps = 77/315 (24%)

Query: 193 VKVDDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRK 252
           + + ++++ + I KG    V    +RG + A+K + N            A ++       
Sbjct: 4   LNMKELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIKN-----------DATAQAF----- 47

Query: 253 PLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRN 312
              L E  +M  +     H N+V +     +                             
Sbjct: 48  ---LAEASVMTQLR----HSNLVQLLGVIVE---------------------------EK 73

Query: 313 MSLFILMKKY-NTDLRNYLRER-CAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDN 370
             L+I+ +      L +YLR R  + L     +     + E + +L  +   HRDL + N
Sbjct: 74  GGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARN 133

Query: 371 ILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFS 430
           +L+   EDN      ++DFG         + + SS        V   APE          
Sbjct: 134 VLVS--EDNVA---KVSDFGL--------TKEASSTQDTGKLPVKWTAPEALREKK---- 176

Query: 431 FVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTDY----EVNALPQLNTNVPEVMRRLV 485
              +S KSD W+ G + +EI+      Y      D     E           P  +  ++
Sbjct: 177 ---FSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDGCPPAVYEVM 233

Query: 486 AKLLENDPSDRPSAE 500
                 D + RPS  
Sbjct: 234 KNCWHLDAAMRPSFL 248

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (278), Expect = 8e-28
 Identities = 58/313 (18%), Positives = 104/313 (33%), Gaps = 68/313 (21%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKP 253
           D  +I   +  G    VY+A  +   V  A K++   S                      
Sbjct: 12  DFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDY--------------- 56

Query: 254 LRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNM 313
             + E  ++ S +    HPN+V +  AF                                
Sbjct: 57  --MVEIDILASCD----HPNIVKLLDAFYY----------------------------EN 82

Query: 314 SLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNIL 372
           +L+IL++      +   + E    L+  +  ++  Q L+ + +L+ ++  HRDLK+ NIL
Sbjct: 83  NLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDALNYLHDNKIIHRDLKAGNIL 142

Query: 373 LDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV 432
                D     + + DFG S  N   +  + S       G    MAPEV +         
Sbjct: 143 FT--LDGD---IKLADFGVSAKNTRTIQRRDSFI-----GTPYWMAPEVVMCETSKDRPY 192

Query: 433 NYSKSDAWTAGTVAYEIFGHDNPFY-----QSARNTDYEVNALPQLNTNVPEVMRRLVAK 487
           +Y K+D W+ G    E+   + P +     +                +      +  + K
Sbjct: 193 DY-KADVWSLGITLIEMAEIEPPHHELNPMRVLLKIAKSEPPTLAQPSRWSSNFKDFLKK 251

Query: 488 LLENDPSDRPSAE 500
            LE +   R +  
Sbjct: 252 CLEKNVDARWTTS 264

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 3e-27
 Identities = 57/323 (17%), Positives = 111/323 (34%), Gaps = 79/323 (24%)

Query: 194 KVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLR 251
           + +D ++   I  G+     +   +  G     K +         +  +    K++L   
Sbjct: 2   RAEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKEL--------DYGSMTEAEKQML--- 50

Query: 252 KPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGR 311
               ++E  L+  ++    HPN+V  +    D                            
Sbjct: 51  ----VSEVNLLRELK----HPNIVRYYDRIID--------------------------RT 76

Query: 312 NMSLFILMKKY--NTDLRNYLRERCAQ---LSMHERVLLFTQLLEGVTHL-----NMHRT 361
           N +L+I+M+ Y    DL + + +   +   L     + + TQL   +          H  
Sbjct: 77  NTTLYIVME-YCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTV 135

Query: 362 AHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEV 421
            HRDLK  N+ LD  +      + + DFG +       S   +       G    M+PE 
Sbjct: 136 LHRDLKPANVFLDGKQ-----NVKLGDFGLARILNHDTSFAKA-----FVGTPYYMSPEQ 185

Query: 422 ALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV---NALPQLNTNV 477
                   + ++Y+ KSD W+ G + YE+     PF   ++             ++    
Sbjct: 186 -------MNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAGKIREGKFRRIPYRY 238

Query: 478 PEVMRRLVAKLLENDPSDRPSAE 500
            + +  ++ ++L      RPS E
Sbjct: 239 SDELNEIITRMLNLKDYHRPSVE 261

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (268), Expect = 2e-26
 Identities = 55/311 (17%), Positives = 100/311 (32%), Gaps = 64/311 (20%)

Query: 194 KVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLR 251
           + +D + GK + +G+ + V  A       EYA+K++         H I +     +    
Sbjct: 6   RPEDFKFGKILGEGSFSTVVLARELATSREYAIKIL------EKRHIIKENKVPYVT--- 56

Query: 252 KPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGR 311
                 E  +M+ ++    HP  V ++F F D                            
Sbjct: 57  -----RERDVMSRLD----HPFFVKLYFTFQD---------------------------- 79

Query: 312 NMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNI 371
           +  L+  +             +              +++  + +L+     HRDLK +NI
Sbjct: 80  DEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENI 139

Query: 372 LLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF 431
           LL+         + ITDFG++           ++      G    ++PE+          
Sbjct: 140 LLNED-----MHIQITDFGTAKVLSPESKQARAN---SFVGTAQYVSPELLTEKS----- 186

Query: 432 VNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVAKLL 489
                SD W  G + Y++     PF        ++  +              R LV KLL
Sbjct: 187 -ACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLL 245

Query: 490 ENDPSDRPSAE 500
             D + R   E
Sbjct: 246 VLDATKRLGCE 256

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score =  106 bits (265), Expect = 1e-25
 Identities = 51/315 (16%), Positives = 100/315 (31%), Gaps = 75/315 (23%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKP 253
           D   I + +  G   VV+    +  G  +  K +                     PL K 
Sbjct: 29  DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFI-----------------NTPYPLDKY 71

Query: 254 LRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNM 313
              NE  +MN +     HP ++ +H AF D                              
Sbjct: 72  TVKNEISIMNQLH----HPKLINLHDAFED----------------------------KY 99

Query: 314 SLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNIL 372
            + ++++     +L + +     ++S  E +    Q  EG+ H++ H   H D+K +NI+
Sbjct: 100 EMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIM 159

Query: 373 LDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV 432
            +  +      + I DFG +        ++ +             APE+    P      
Sbjct: 160 CETKKA---SSVKIIDFGLATKLNPDEIVKVT------TATAEFAAPEIVDREP------ 204

Query: 433 NYSK-SDAWTAGTVAYEI------FGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLV 485
                +D W  G + Y +      F  ++           +        ++V    +  +
Sbjct: 205 -VGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDWEFDEDAFSSVSPEAKDFI 263

Query: 486 AKLLENDPSDRPSAE 500
             LL+ +P  R +  
Sbjct: 264 KNLLQKEPRKRLTVH 278

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (260), Expect = 2e-25
 Identities = 62/344 (18%), Positives = 117/344 (34%), Gaps = 79/344 (22%)

Query: 191 DDVKVDDIQIGKFIAKGTNAVVYEATFR----GVEYALKMMFNYSAASNSHAILKAMSKE 246
           D++ + DI++G     G    V +  +R     ++ A+K++             KA ++E
Sbjct: 8   DNLLIADIELGC----GNFGSVRQGVYRMRKKQIDVAIKVL--------KQGTEKADTEE 55

Query: 247 LLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPT 306
           ++         E  +M+ ++    +P +V +                             
Sbjct: 56  MM--------REAQIMHQLD----NPYIVRLI---------------------------- 75

Query: 307 GGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRD 365
            G  +  +L ++M+      L  +L  +  ++ +     L  Q+  G+ +L      HRD
Sbjct: 76  -GVCQAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNFVHRD 134

Query: 366 LKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALAT 425
           L + N+LL            I+DFG S     G    Y +A       +   APE     
Sbjct: 135 LAARNVLLVNR-----HYAKISDFGLS--KALGADDSYYTARSAGKWPLKWYAPECINFR 187

Query: 426 PGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD----YEVNALPQLNTNVPEVM 481
                    S+SD W+ G   +E   +    Y+  +  +     E     +     P  +
Sbjct: 188 K------FSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKRMECPPECPPEL 241

Query: 482 RRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGATPSHN 525
             L++        DRP      TV Q  + A  + L      H+
Sbjct: 242 YALMSDCWIYKWEDRPD---FLTVEQR-MRACYYSLASKVEGHH 281

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (261), Expect = 2e-25
 Identities = 57/311 (18%), Positives = 103/311 (33%), Gaps = 67/311 (21%)

Query: 195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRK 252
           ++D  + K + KG+   V+ A F+     +A+K +       +                +
Sbjct: 1   IEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDD-------------VE 47

Query: 253 PLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRN 312
              + + +L  + E    HP +  M   F                               
Sbjct: 48  CTMVEKRVLSLAWE----HPFLTHMFCTFQT----------------------------K 75

Query: 313 MSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNI 371
            +LF +M+     DL  +++  C +  +        +++ G+  L+     +RDLK DNI
Sbjct: 76  ENLFFVMEYLNGGDLMYHIQ-SCHKFDLSRATFYAAEIILGLQFLHSKGIVYRDLKLDNI 134

Query: 372 LLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF 431
           LLD           I DFG    N  G +   +       G    +APE+ L        
Sbjct: 135 LLDKDGHI-----KIADFGMCKENMLGDAKTNTFC-----GTPDYIAPEILLGQK----- 179

Query: 432 VNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVAKLL 489
                 D W+ G + YE+    +PF+       +       P     + +  + L+ KL 
Sbjct: 180 -YNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSIRMDNPFYPRWLEKEAKDLLVKLF 238

Query: 490 ENDPSDRPSAE 500
             +P  R    
Sbjct: 239 VREPEKRLGVR 249

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (256), Expect = 4e-25
 Identities = 43/312 (13%), Positives = 93/312 (29%), Gaps = 70/312 (22%)

Query: 198 IQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLR 255
           ++    I +G+   VY+       VE A   +           + K+  +          
Sbjct: 11  LKFDIEIGRGSFKTVYKGLDTETTVEVAWCEL-------QDRKLTKSERQRFK------- 56

Query: 256 LNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSL 315
             E  ++  ++    HPN+V  + ++   V       L+                 + +L
Sbjct: 57  -EEAEMLKGLQ----HPNIVRFYDSWESTVKGKKCIVLVTE------------LMTSGTL 99

Query: 316 FILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTA--HRDLKSDNILL 373
              +K++              + +        Q+L+G+  L+       HRDLK DNI +
Sbjct: 100 KTYLKRFKV------------MKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFI 147

Query: 374 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN 433
                     + I D G +   ++  +           G    MAPE+            
Sbjct: 148 T----GPTGSVKIGDLGLATLKRASFAKAVI-------GTPEFMAPEMYEEKYD------ 190

Query: 434 YSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNAL-----PQLNTNVPEVMRRLVAKL 488
               D +  G    E+   + P+ +                    +      ++ ++   
Sbjct: 191 -ESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFDKVAIPEVKEIIEGC 249

Query: 489 LENDPSDRPSAE 500
           +  +  +R S +
Sbjct: 250 IRQNKDERYSIK 261

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (257), Expect = 6e-25
 Identities = 50/314 (15%), Positives = 99/314 (31%), Gaps = 64/314 (20%)

Query: 193 VKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPL 250
           +K  + +  K +  G    VY+  +   G +  + +             +K + +   P 
Sbjct: 6   LKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVA------------IKELREATSPK 53

Query: 251 RKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYG 310
                L+E  +M SV+    +P+V  +                                 
Sbjct: 54  ANKEILDEAYVMASVD----NPHVCRLLGICLT--------------------------- 82

Query: 311 RNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDN 370
            +    I        L +Y+RE    +     +    Q+ +G+ +L   R  HRDL + N
Sbjct: 83  -STVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARN 141

Query: 371 ILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFS 430
           +L+          + ITDFG +    +     ++         +  MA E  L    +++
Sbjct: 142 VLVKTP-----QHVKITDFGLAKLLGAEEKEYHAEG---GKVPIKWMALESIL--HRIYT 191

Query: 431 FVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD----YEVNALPQLNTNVPEVMRRLVA 486
                +SD W+ G   +E+    +  Y     ++     E              +  ++ 
Sbjct: 192 H----QSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPICTIDVYMIMV 247

Query: 487 KLLENDPSDRPSAE 500
           K    D   RP   
Sbjct: 248 KCWMIDADSRPKFR 261

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  102 bits (256), Expect = 8e-25
 Identities = 59/341 (17%), Positives = 109/341 (31%), Gaps = 79/341 (23%)

Query: 169 EIRHAVNNMFDKLVQVETLPDVDDVKVDDIQIGKFIAKGTNAVVYEATFR-----GVEYA 223
           +   AV   F K           ++ +  ++I + I  G    V     +      +  A
Sbjct: 11  DPNEAVRE-FAK-----------EIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVA 58

Query: 224 LKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTD 283
           +K + +                          L+E  +M   +    HPNV+ +    T 
Sbjct: 59  IKTLKSGYTEKQRRDF----------------LSEASIMGQFD----HPNVIHLEGVVTK 98

Query: 284 FVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERV 343
                                          + I     N  L ++LR+   Q ++ + V
Sbjct: 99  ---------------------------STPVMIITEFMENGSLDSFLRQNDGQFTVIQLV 131

Query: 344 LLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQY 403
            +   +  G+ +L      HRDL + NIL++   +  C    ++DFG S   +   S   
Sbjct: 132 GMLRGIAAGMKYLADMNYVHRDLAARNILVN--SNLVC---KVSDFGLSRFLEDDTSDPT 186

Query: 404 SSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNT 463
            ++ +     +   APE              S SD W+ G V +E+  +    Y    N 
Sbjct: 187 YTSALGGKIPIRWTAPEAIQYRK------FTSASDVWSYGIVMWEVMSYGERPYWDMTNQ 240

Query: 464 DY----EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
           D     E +       + P  + +L+    + D + RP   
Sbjct: 241 DVINAIEQDYRLPPPMDCPSALHQLMLDCWQKDRNHRPKFG 281

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (254), Expect = 9e-25
 Identities = 54/304 (17%), Positives = 90/304 (29%), Gaps = 62/304 (20%)

Query: 199 QIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRL 256
           Q+G  +  G    VY        +  A+K +               +S            
Sbjct: 7   QVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVE-----------KDRISDWGELPNGTRVP 55

Query: 257 NEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLF 316
            E +L+  V +      V+ +   F                              +  + 
Sbjct: 56  MEVVLLKKVSS--GFSGVIRLLDWFER---------------------------PDSFVL 86

Query: 317 ILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCS 376
           IL +                L        F Q+LE V H +     HRD+K +NIL+D +
Sbjct: 87  ILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLN 146

Query: 377 EDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSK 436
                 +L + DFGS    K  +   +        G      PE            +   
Sbjct: 147 R----GELKLIDFGSGALLKDTVYTDFD-------GTRVYSPPEWIRYHR-----YHGRS 190

Query: 437 SDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDR 496
           +  W+ G + Y++   D PF     + +  +         V    + L+   L   PSDR
Sbjct: 191 AAVWSLGILLYDMVCGDIPFE----HDEEIIRGQVFFRQRVSSECQHLIRWCLALRPSDR 246

Query: 497 PSAE 500
           P+ E
Sbjct: 247 PTFE 250

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (254), Expect = 1e-24
 Identities = 60/329 (18%), Positives = 103/329 (31%), Gaps = 69/329 (20%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLR 255
             I + + I KG    V+   +RG E A+K+                 S      R   R
Sbjct: 3   RTIVLQESIGKGRFGEVWRGKWRGEEVAVKIF----------------SSR--EERSWFR 44

Query: 256 LNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSL 315
             E      +     H N++    A      +     L+              Y  + SL
Sbjct: 45  EAEIYQTVMLR----HENILGFIAADNKDNGTWTQLWLVSD------------YHEHGSL 88

Query: 316 FILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDC 375
           F  + +Y   +     E   +L++     L    +E V        AHRDLKS NIL+  
Sbjct: 89  FDYLNRYTVTV-----EGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKK 143

Query: 376 SEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS 435
           +         I D G +  + S  +     A     G    MAPEV   +  +  F ++ 
Sbjct: 144 N-----GTCCIADLGLAVRHDSA-TDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFK 197

Query: 436 KSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQ----------------------- 472
           ++D +  G V +EI    +             + +P                        
Sbjct: 198 RADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNR 257

Query: 473 -LNTNVPEVMRRLVAKLLENDPSDRPSAE 500
             +     VM +++ +    + + R +A 
Sbjct: 258 WQSCEALRVMAKIMRECWYANGAARLTAL 286

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (252), Expect = 1e-24
 Identities = 63/317 (19%), Positives = 109/317 (34%), Gaps = 72/317 (22%)

Query: 193 VKVDDIQIGKFIAKGTNAVVYEATFR-----GVEYALKMMFNYSAASNSHAILKAMSKEL 247
           ++ + I++G+ I +G    V++  +       +  A+K   N ++ S             
Sbjct: 4   IQRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKF-------- 55

Query: 248 LPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTG 307
                   L E + M   +    HP++V +    T+                        
Sbjct: 56  --------LQEALTMRQFD----HPHIVKLIGVITE------------------------ 79

Query: 308 GYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLK 367
               N    I+      +LR++L+ R   L +   +L   QL   + +L   R  HRD+ 
Sbjct: 80  ----NPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIA 135

Query: 368 SDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG 427
           + N+L+      +   + + DFG S   +     + S         +  MAPE       
Sbjct: 136 ARNVLVS-----SNDCVKLGDFGLSRYMEDSTYYKASKG----KLPIKWMAPES------ 180

Query: 428 LFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD----YEVNALPQLNTNVPEVMRR 483
           +      S SD W  G   +EI  H    +Q  +N D     E      +  N P  +  
Sbjct: 181 INFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYS 240

Query: 484 LVAKLLENDPSDRPSAE 500
           L+ K    DPS RP   
Sbjct: 241 LMTKCWAYDPSRRPRFT 257

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (249), Expect = 4e-24
 Identities = 51/313 (16%), Positives = 96/313 (30%), Gaps = 68/313 (21%)

Query: 195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRK 252
           V+D  + + + +G    V  A  R      A+K++                  +      
Sbjct: 4   VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIV----------------DMKRAVDCP 47

Query: 253 PLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRN 312
                E  +   +     H NVV  +                                  
Sbjct: 48  ENIKKEICINKMLN----HENVVKFYGHRR----------------------------EG 75

Query: 313 MSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNIL 372
              ++ ++  +        E    +   +    F QL+ GV +L+     HRD+K +N+L
Sbjct: 76  NIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLL 135

Query: 373 LDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV 432
           LD  +      L I+DFG +   +     +  +   ++ G +  +APE+           
Sbjct: 136 LDERD-----NLKISDFGLATVFRYNNRERLLN---KMCGTLPYVAPELLKRRE-----F 182

Query: 433 NYSKSDAWTAGTVAYEIF-GHDNPFYQSARNTDY----EVNALPQLNTNVPEVMRRLVAK 487
           +    D W+ G V   +  G       S    +Y    E          +      L+ K
Sbjct: 183 HAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPLALLHK 242

Query: 488 LLENDPSDRPSAE 500
           +L  +PS R +  
Sbjct: 243 ILVENPSARITIP 255

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (252), Expect = 5e-24
 Identities = 58/325 (17%), Positives = 110/325 (33%), Gaps = 80/325 (24%)

Query: 192 DVKVDDIQI-GKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELL 248
           +  +DD ++  + +  G N  V +   +    ++ALKM+ +   A     +    S+   
Sbjct: 7   NAIIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQ--- 63

Query: 249 PLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGG 308
                                  P++V +   + +                         
Sbjct: 64  ----------------------CPHIVRIVDVYENL------------------------ 77

Query: 309 YGRNMSLFILMKKY-NTDLRNYLRERCAQ-LSMHERVLLFTQLLEGVTHLNMHRTAHRDL 366
           Y     L I+M+     +L + +++R  Q  +  E   +   + E + +L+    AHRD+
Sbjct: 78  YAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDV 137

Query: 367 KSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP 426
           K +N+L      N    L +TDFG +    S  S+               +APEV     
Sbjct: 138 KPENLLYTSKRPN--AILKLTDFGFAKETTSHNSLTTPCYTPY------YVAPEVLGPEK 189

Query: 427 GLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQS----------ARNTDYEVNALPQLNT 475
                  Y    D W+ G + Y +     PFY +           R    +        +
Sbjct: 190 -------YDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWS 242

Query: 476 NVPEVMRRLVAKLLENDPSDRPSAE 500
            V E ++ L+  LL+ +P+ R +  
Sbjct: 243 EVSEEVKMLIRNLLKTEPTQRMTIT 267

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (250), Expect = 7e-24
 Identities = 60/320 (18%), Positives = 103/320 (32%), Gaps = 38/320 (11%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLR 255
           ++++ GK +  G    V  AT  G+              +    +K + ++     +   
Sbjct: 37  ENLEFGKVLGSGAFGKVMNATAYGIS---------KTGVSIQVAVKMLKEKADSSEREAL 87

Query: 256 LNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSL 315
           ++E  +M  + +   H N+V +  A T   P            L   L       +    
Sbjct: 88  MSELKMMTQLGS---HENIVNLLGACTLSGPIYLIFEYCCYGDLLNYL-----RSKREKF 139

Query: 316 FILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDC 375
                +Y    R    E    L+  + +    Q+ +G+  L      HRDL + N+L+  
Sbjct: 140 SEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAARNVLVTH 199

Query: 376 SEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS 435
                   + I DFG +   +  +S             V  MAPE       LF  +   
Sbjct: 200 G-----KVVKICDFGLA---RDIMSDSNYVVRGNARLPVKWMAPES------LFEGIYTI 245

Query: 436 KSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNAL-----PQLNTNVPEVMRRLVAKLLE 490
           KSD W+ G + +EIF      Y            +             E +  ++     
Sbjct: 246 KSDVWSYGILLWEIFSLGVNPYPGIPVDANFYKLIQNGFKMDQPFYATEEIYIIMQSCWA 305

Query: 491 NDPSDRPSAE--LAATVCQL 508
            D   RPS     +   CQL
Sbjct: 306 FDSRKRPSFPNLTSFLGCQL 325

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 99.7 bits (248), Expect = 1e-23
 Identities = 64/325 (19%), Positives = 105/325 (32%), Gaps = 76/325 (23%)

Query: 188 PDVDDVKVDD-----IQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAIL 240
           PDV ++   D         + I  G+   VY A         A+K M      S S    
Sbjct: 2   PDVAELFFKDDPEKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKM------SYSGKQS 55

Query: 241 KAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALP 300
               ++++         E   +  +     HPN +     +                   
Sbjct: 56  NEKWQDII--------KEVRFLQKLR----HPNTIQYRGCYLR----------------- 86

Query: 301 ARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHR 360
                        + +++M+       + L      L   E   +    L+G+ +L+ H 
Sbjct: 87  -----------EHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHN 135

Query: 361 TAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPE 420
             HRD+K+ NILL   E      + + DFGS+       S           G    MAPE
Sbjct: 136 MIHRDVKAGNILLS--EPGL---VKLGDFGSASIMAPANSFV---------GTPYWMAPE 181

Query: 421 VALATP-GLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY----EVNALPQLNT 475
           V LA   G +      K D W+ G    E+     P +     +      +  +    + 
Sbjct: 182 VILAMDEGQYDG----KVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPALQSG 237

Query: 476 NVPEVMRRLVAKLLENDPSDRPSAE 500
           +  E  R  V   L+  P DRP++E
Sbjct: 238 HWSEYFRNFVDSCLQKIPQDRPTSE 262

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.7 bits (248), Expect = 1e-23
 Identities = 50/315 (15%), Positives = 98/315 (31%), Gaps = 76/315 (24%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKP 253
           +   I + + +G   +V+          Y  K +            +K   + L+     
Sbjct: 5   EKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVK-----------VKGTDQVLV----- 48

Query: 254 LRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNM 313
               E  ++N       H N++ +H +F                               M
Sbjct: 49  --KKEISILNIAR----HRNILHLHESFES-----------------------------M 73

Query: 314 SLFILMKKY--NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNI 371
              +++ ++    D+   +     +L+  E V    Q+ E +  L+ H   H D++ +NI
Sbjct: 74  EELVMIFEFISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHSHNIGHFDIRPENI 133

Query: 372 LLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF 431
           +           + I +FG +   K G + +       L       APEV          
Sbjct: 134 IYQTRRS---STIKIIEFGQARQLKPGDNFRL------LFTAPEYYAPEVHQHDV----- 179

Query: 432 VNYSKSDAWTAGTVAYEIFGHDNPFYQS------ARNTDYEVNALPQLNTNVPEVMRRLV 485
              + +D W+ GT+ Y +    NPF             + E     +    +       V
Sbjct: 180 -VSTATDMWSLGTLVYVLLSGINPFLAETNQQIIENIMNAEYTFDEEAFKEISIEAMDFV 238

Query: 486 AKLLENDPSDRPSAE 500
            +LL  +   R +A 
Sbjct: 239 DRLLVKERKSRMTAS 253

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.4 bits (244), Expect = 2e-23
 Identities = 52/309 (16%), Positives = 100/309 (32%), Gaps = 58/309 (18%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLR 255
             +   K I  G    VY+   +      ++           AI K +       ++   
Sbjct: 7   SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPV---------AI-KTLKAGYTEKQRVDF 56

Query: 256 LNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSL 315
           L E  +M        H N++ +    +                                +
Sbjct: 57  LGEAGIMGQFS----HHNIIRLEGVISK---------------------------YKPMM 85

Query: 316 FILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDC 375
            I     N  L  +LRE+  + S+ + V +   +  G+ +L      HRDL + NIL++ 
Sbjct: 86  IITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVN- 144

Query: 376 SEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS 435
             +  C    ++DFG S   +      Y+++       +   APE       +      S
Sbjct: 145 -SNLVC---KVSDFGLSRVLEDDPEATYTTSGG--KIPIRWTAPEA------ISYRKFTS 192

Query: 436 KSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNAL----PQLNTNVPEVMRRLVAKLLEN 491
            SD W+ G V +E+  +    Y    N +               + P  + +L+ +  + 
Sbjct: 193 ASDVWSFGIVMWEVMTYGERPYWELSNHEVMKAINDGFRLPTPMDCPSAIYQLMMQCWQQ 252

Query: 492 DPSDRPSAE 500
           + + RP   
Sbjct: 253 ERARRPKFA 261

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.7 bits (245), Expect = 2e-23
 Identities = 53/315 (16%), Positives = 96/315 (30%), Gaps = 60/315 (19%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKP 253
           +DI+    I +G    V +A  +  G+     +              K M +        
Sbjct: 10  NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAI--------------KRMKEYASKDDHR 55

Query: 254 LRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNM 313
               E  ++  + +   HPN++ +  A                      L     Y  + 
Sbjct: 56  DFAGELEVLCKLGH---HPNIINLLGACEH----------------RGYLYLAIEYAPHG 96

Query: 314 SLFILMKKYNT----DLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSD 369
           +L   ++K                 + LS  + +     +  G+ +L+  +  HRDL + 
Sbjct: 97  NLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAAR 156

Query: 370 NILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF 429
           NIL+  +         I DFG S   +  +              V  MA E       L 
Sbjct: 157 NILVGEN-----YVAKIADFGLSRGQEVYVKKTMG------RLPVRWMAIES------LN 199

Query: 430 SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNAL----PQLNTNVPEVMRRLV 485
             V  + SD W+ G + +EI       Y      +           +   N  + +  L+
Sbjct: 200 YSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRLEKPLNCDDEVYDLM 259

Query: 486 AKLLENDPSDRPSAE 500
            +     P +RPS  
Sbjct: 260 RQCWREKPYERPSFA 274

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.4 bits (242), Expect = 3e-23
 Identities = 54/323 (16%), Positives = 104/323 (32%), Gaps = 76/323 (23%)

Query: 188 PDVDD---VKVDDIQIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAILKAM 243
           P  +D   V  + +++ + +  G    V+   +    + A+K +              A 
Sbjct: 2   PWWEDEWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSL------KQGSMSPDAF 55

Query: 244 SKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARL 303
             E   ++   +L              H  +V ++                         
Sbjct: 56  LAEANLMK---QLQ-------------HQRLVRLY------------------------- 74

Query: 304 NPTGGYGRNMSLFILMKKY-NTDLRNYLRERCA-QLSMHERVLLFTQLLEGVTHLNMHRT 361
                      ++I+ +   N  L ++L+     +L++++ + +  Q+ EG+  +     
Sbjct: 75  ----AVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNY 130

Query: 362 AHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEV 421
            HRDL++ NIL+            I DFG +   +         A       +   APE 
Sbjct: 131 IHRDLRAANILVSD-----TLSCKIADFGLARLIEDNEYTAREGA----KFPIKWTAPEA 181

Query: 422 ALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNAL----PQLNTNV 477
                         KSD W+ G +  EI  H    Y    N +   N           N 
Sbjct: 182 INYGT------FTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDNC 235

Query: 478 PEVMRRLVAKLLENDPSDRPSAE 500
           PE + +L+    +  P DRP+ +
Sbjct: 236 PEELYQLMRLCWKERPEDRPTFD 258

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.3 bits (239), Expect = 6e-23
 Identities = 53/311 (17%), Positives = 101/311 (32%), Gaps = 71/311 (22%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPL 254
            D+   K +  G   VV    +R   + A+KM+              +MS++        
Sbjct: 4   KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKE-----------GSMSEDEF------ 46

Query: 255 RLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMS 314
            + E  +M ++     H  +V ++   T                            +   
Sbjct: 47  -IEEAKVMMNLS----HEKLVQLYGVCTK---------------------------QRPI 74

Query: 315 LFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLD 374
             I     N  L NYLRE   +    + + +   + E + +L   +  HRDL + N L++
Sbjct: 75  FIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVN 134

Query: 375 CSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY 434
                    + ++DFG S             +       V    PEV + +        +
Sbjct: 135 -----DQGVVKVSDFGLSRYVLDDEYTSSVGS----KFPVRWSPPEVLMYSK-------F 178

Query: 435 S-KSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNAL----PQLNTNVPEVMRRLVAKLL 489
           S KSD W  G + +EI+      Y+   N++   +              E +  ++    
Sbjct: 179 SSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRPHLASEKVYTIMYSCW 238

Query: 490 ENDPSDRPSAE 500
                +RP+ +
Sbjct: 239 HEKADERPTFK 249

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 95.9 bits (238), Expect = 2e-22
 Identities = 60/320 (18%), Positives = 116/320 (36%), Gaps = 75/320 (23%)

Query: 191 DDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELL 248
           +D++ D       +  G  + V  A  +      A+K                 ++K+ L
Sbjct: 5   EDIR-DIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKC----------------IAKKAL 47

Query: 249 PLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGG 308
             ++    NE  +++ ++    HPN+V +   +                           
Sbjct: 48  EGKEGSMENEIAVLHKIK----HPNIVALDDIYES------------------------- 78

Query: 309 YGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLK 367
                 L+++M+     +L + + E+    +  +   L  Q+L+ V +L+     HRDLK
Sbjct: 79  ---GGHLYLIMQLVSGGELFDRIVEK-GFYTERDASRLIFQVLDAVKYLHDLGIVHRDLK 134

Query: 368 SDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG 427
            +N+L    +++   +++I+DFG S     G  +          G    +APEV    P 
Sbjct: 135 PENLLYYSLDED--SKIMISDFGLSKMEDPGSVLS------TACGTPGYVAPEVLAQKP- 185

Query: 428 LFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTDYE------VNALPQLNTNVPEV 480
                 YS   D W+ G +AY +     PFY       +E               ++ + 
Sbjct: 186 ------YSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILKAEYEFDSPYWDDISDS 239

Query: 481 MRRLVAKLLENDPSDRPSAE 500
            +  +  L+E DP  R + E
Sbjct: 240 AKDFIRHLMEKDPEKRFTCE 259

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.8 bits (235), Expect = 2e-22
 Identities = 59/320 (18%), Positives = 102/320 (31%), Gaps = 73/320 (22%)

Query: 189 DVDDVKVDDIQIGKFIAKGTNAVVYEATFR----GVEYALKMMFNYSAASNSHAILKAMS 244
           D   + ++D ++G     G    V +  ++        A+K++        + A   A+ 
Sbjct: 4   DRKLLTLEDKELGS----GNFGTVKKGYYQMKKVVKTVAVKIL-------KNEANDPALK 52

Query: 245 KELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLN 304
            ELL         E  +M  ++    +P +V M                           
Sbjct: 53  DELL--------AEANVMQQLD----NPYIVRMI-------------------------- 74

Query: 305 PTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHR 364
              G     S  ++M+       N   ++   +     + L  Q+  G+ +L      HR
Sbjct: 75  ---GICEAESWMLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESNFVHR 131

Query: 365 DLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALA 424
           DL + N+LL            I+DFG S   ++     Y  A       V   APE    
Sbjct: 132 DLAARNVLLVTQHYAK-----ISDFGLSKALRAD--ENYYKAQTHGKWPVKWYAPECINY 184

Query: 425 TPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD----YEVNALPQLNTNVPEV 480
                     SKSD W+ G + +E F +    Y+  + ++     E           P  
Sbjct: 185 YK------FSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAGCPRE 238

Query: 481 MRRLVAKLLENDPSDRPSAE 500
           M  L+      D  +RP   
Sbjct: 239 MYDLMNLCWTYDVENRPGFA 258

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 95.2 bits (236), Expect = 3e-22
 Identities = 65/324 (20%), Positives = 111/324 (34%), Gaps = 77/324 (23%)

Query: 188 PDVDD--VKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAM 243
           P+ D   ++  DI +   +  G    VYE  ++   +  A+K +               M
Sbjct: 7   PNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-----------DTM 55

Query: 244 SKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARL 303
             E         L E  +M  ++    HPN+V +    T                     
Sbjct: 56  EVEEF-------LKEAAVMKEIK----HPNLVQLLGVCTR-------------------- 84

Query: 304 NPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQ-LSMHERVLLFTQLLEGVTHLNMHRT 361
                       +I+ +     +L +YLRE   Q +S    + + TQ+   + +L     
Sbjct: 85  --------EPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNF 136

Query: 362 AHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEV 421
            HRDL + N L+   E++    + + DFG S          ++ A       +   APE 
Sbjct: 137 IHRDLAARNCLVG--ENHL---VKVADFGLSRLMTGDTYTAHAGA----KFPIKWTAPES 187

Query: 422 ALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTD----YEVNALPQLNTN 476
                       +S KSD W  G + +EI  +    Y     +      E +   +    
Sbjct: 188 LAYNK-------FSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEG 240

Query: 477 VPEVMRRLVAKLLENDPSDRPSAE 500
            PE +  L+    + +PSDRPS  
Sbjct: 241 CPEKVYELMRACWQWNPSDRPSFA 264

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.2 bits (236), Expect = 3e-22
 Identities = 55/314 (17%), Positives = 110/314 (35%), Gaps = 66/314 (21%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKP 253
           D    G+ +  G  AVV +   +  G++YA K +      S+   + +            
Sbjct: 10  DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDI--------- 60

Query: 254 LRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNM 313
               E  ++  ++    HPNV+ +H  + +                              
Sbjct: 61  --EREVSILKEIQ----HPNVITLHEVYEN----------------------------KT 86

Query: 314 SLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
            + ++++                L+  E      Q+L GV +L+  + AH DLK +NI+L
Sbjct: 87  DVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIML 146

Query: 374 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN 433
               +   P++ I DFG ++       + + +    + G    +APE+    P       
Sbjct: 147 L-DRNVPKPRIKIIDFGLAH------KIDFGNEFKNIFGTPEFVAPEIVNYEP------- 192

Query: 434 YSK-SDAWTAGTVAYEIFGHDNPFY------QSARNTDYEVNALPQLNTNVPEVMRRLVA 486
               +D W+ G + Y +    +PF         A  +        +  +N   + +  + 
Sbjct: 193 LGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIR 252

Query: 487 KLLENDPSDRPSAE 500
           +LL  DP  R + +
Sbjct: 253 RLLVKDPKKRMTIQ 266

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.4 bits (234), Expect = 3e-22
 Identities = 47/319 (14%), Positives = 94/319 (29%), Gaps = 71/319 (22%)

Query: 193 VKVDDIQIGKFIAKGTNAVVYEATF-----RGVEYALKMMFNYSAASNSHAILKAMSKEL 247
           +   D+++ + +  G+  VV    +     + V  A+K +                  + 
Sbjct: 5   IGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCL------KPDVLSQPEAMDDF 58

Query: 248 LPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTG 307
                   + E   M+S++    H N++ ++                             
Sbjct: 59  --------IREVNAMHSLD----HRNLIRLY----------------------------- 77

Query: 308 GYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDL 366
           G      + ++ +      L + LR+      +        Q+ EG+ +L   R  HRDL
Sbjct: 78  GVVLTPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRFIHRDL 137

Query: 367 KSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP 426
            + N+LL          + I DFG                        A  APE      
Sbjct: 138 AARNLLLAT-----RDLVKIGDFGLMRALPQNDDHYVMQEHR--KVPFAWCAPESLKTRT 190

Query: 427 GLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD-----YEVNALPQLNTNVPEVM 481
                     SD W  G   +E+F +    +     +       +         + P+ +
Sbjct: 191 ------FSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPRPEDCPQDI 244

Query: 482 RRLVAKLLENDPSDRPSAE 500
             ++ +   + P DRP+  
Sbjct: 245 YNVMVQCWAHKPEDRPTFV 263

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.0 bits (233), Expect = 4e-22
 Identities = 50/314 (15%), Positives = 102/314 (32%), Gaps = 71/314 (22%)

Query: 193 VKVDDIQIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAILKAMSKELLPLR 251
           +   ++   + I  G   +V+   +    + A+K +              AMS+E     
Sbjct: 2   IDPSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIRE-----------GAMSEEDF--- 47

Query: 252 KPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGR 311
               + E  +M  +     HP +V ++    +                           +
Sbjct: 48  ----IEEAEVMMKLS----HPKLVQLYGVCLE---------------------------Q 72

Query: 312 NMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNI 371
                +     +  L +YLR +    +    + +   + EG+ +L      HRDL + N 
Sbjct: 73  APICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNC 132

Query: 372 LLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF 431
           L+   E+       ++DFG +           +         V   +PEV   +      
Sbjct: 133 LVG--ENQVI---KVSDFGMTRFVLDDQYTSSTG----TKFPVKWASPEVFSFSR----- 178

Query: 432 VNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTDY----EVNALPQLNTNVPEVMRRLVA 486
             YS KSD W+ G + +E+F      Y++  N++                    + +++ 
Sbjct: 179 --YSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRLASTHVYQIMN 236

Query: 487 KLLENDPSDRPSAE 500
              +  P DRP+  
Sbjct: 237 HCWKERPEDRPAFS 250

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 94.5 bits (234), Expect = 5e-22
 Identities = 64/309 (20%), Positives = 110/309 (35%), Gaps = 35/309 (11%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLR 255
           ++I+  + I +G    V++A   G+               +   +K + +E     +   
Sbjct: 13  NNIEYVRDIGEGAFGRVFQARAPGLL---------PYEPFTMVAVKMLKEEASADMQADF 63

Query: 256 LNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSL 315
             E  LM   +    +PN+V +        P      L++       LN         ++
Sbjct: 64  QREAALMAEFD----NPNIVKLLGVCAVGKPMC----LLFEYMAYGDLNEFLRSMSPHTV 115

Query: 316 FILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDC 375
             L     +            LS  E++ +  Q+  G+ +L+  +  HRDL + N L+  
Sbjct: 116 CSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLATRNCLVG- 174

Query: 376 SEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS 435
            E+     + I DFG S   ++  S  Y  AD      +  M PE       +F     +
Sbjct: 175 -ENMV---VKIADFGLS---RNIYSADYYKADGNDAIPIRWMPPES------IFYNRYTT 221

Query: 436 KSDAWTAGTVAYEIF-GHDNPFYQSARNTDYEV---NALPQLNTNVPEVMRRLVAKLLEN 491
           +SD W  G V +EIF     P+Y  A            +     N P  +  L+      
Sbjct: 222 ESDVWAYGVVLWEIFSYGLQPYYGMAHEEVIYYVRDGNILACPENCPLELYNLMRLCWSK 281

Query: 492 DPSDRPSAE 500
            P+DRPS  
Sbjct: 282 LPADRPSFC 290

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.5 bits (234), Expect = 6e-22
 Identities = 57/329 (17%), Positives = 98/329 (29%), Gaps = 71/329 (21%)

Query: 185 ETLPDVDDVKVD----DIQIGKFIAKGTNAVVYEATF-----RGVEYALKMMFNYSAASN 235
           E +  V  V +      +   + I +G    VY  T      + +  A+K +   +    
Sbjct: 12  ELVQAVQHVVIGPSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGE 71

Query: 236 SHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIY 295
                               L E ++M        HPNV+ +                  
Sbjct: 72  VSQF----------------LTEGIIMKDFS----HPNVLSLLGICLR------------ 99

Query: 296 PSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTH 355
                              L +L    + DLRN++R      ++ + +    Q+ +G+  
Sbjct: 100 --------------SEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKF 145

Query: 356 LNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVA 415
           L   +  HRDL + N +LD         + + DFG +  +                  V 
Sbjct: 146 LASKKFVHRDLAARNCMLDEK-----FTVKVADFGLA-RDMYDKEFDSVHNKTGAKLPVK 199

Query: 416 LMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNAL----P 471
            MA E              +KSD W+ G + +E+     P Y      D  V  L     
Sbjct: 200 WMALESLQTQK------FTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRL 253

Query: 472 QLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
                 P+ +  ++ K        RPS  
Sbjct: 254 LQPEYCPDPLYEVMLKCWHPKAEMRPSFS 282

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 94.1 bits (233), Expect = 6e-22
 Identities = 42/317 (13%), Positives = 82/317 (25%), Gaps = 72/317 (22%)

Query: 199 QIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRL 256
           ++G+ I +G+  V++E T      + A+K     S A       +               
Sbjct: 8   KVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDAPQLRDEYRTYKL----------- 56

Query: 257 NEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLF 316
                      L     +  +++   +                             +   
Sbjct: 57  -----------LAGCTGIPNVYYFGQE----------------------------GLHNV 77

Query: 317 ILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCS 376
           +++      L + L     + S+    +   Q+L  V  ++     +RD+K DN L+   
Sbjct: 78  LVIDLLGPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRP 137

Query: 377 EDNTCPQLVITDFGSS--YTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY 434
                  + + DFG    Y +              L G    M+    L           
Sbjct: 138 NSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGRE-------Q 190

Query: 435 S-KSDAWTAGTVAYE-IFGHDNPFYQSARNTDYEVNA---------LPQLNTNVPEVMRR 483
           S + D    G V    + G        A     +            L +L    PE   +
Sbjct: 191 SRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPLRELCAGFPEEFYK 250

Query: 484 LVAKLLENDPSDRPSAE 500
            +           P  +
Sbjct: 251 YMHYARNLAFDATPDYD 267

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 93.3 bits (231), Expect = 9e-22
 Identities = 48/318 (15%), Positives = 108/318 (33%), Gaps = 65/318 (20%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKP 253
           D  ++G+ +  G  + V+ A       + A+K++   +  +   +      +E       
Sbjct: 7   DRYELGEILGFGGMSEVHLARDLRLHRDVAVKVL--RADLARDPSFYLRFRREAQNAA-- 62

Query: 254 LRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNM 313
             LN             HP +V ++       P+ P   ++              Y   +
Sbjct: 63  -ALN-------------HPAIVAVYDTGEAETPAGPLPYIVME------------YVDGV 96

Query: 314 SLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
           +L  ++                 ++    + +     + +   + +   HRD+K  NI++
Sbjct: 97  TLRDIVHTEG------------PMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMI 144

Query: 374 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN 433
                     + + DFG +       +    +A +   G    ++PE A           
Sbjct: 145 SA-----TNAVKVMDFGIARAIADSGNSVTQTAAV--IGTAQYLSPEQARGDS------V 191

Query: 434 YSKSDAWTAGTVAYEI------FGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAK 487
            ++SD ++ G V YE+      F  D+P   + ++   +       +  +   +  +V K
Sbjct: 192 DARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLK 251

Query: 488 LLENDPSDRPS--AELAA 503
            L  +P +R    AE+ A
Sbjct: 252 ALAKNPENRYQTAAEMRA 269

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 94.8 bits (235), Expect = 1e-21
 Identities = 58/312 (18%), Positives = 101/312 (32%), Gaps = 71/312 (22%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKP 253
           +D  + + I +G    VY       G  YA+K +            L    + +L L   
Sbjct: 4   NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVST 63

Query: 254 LRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNM 313
                             P +V M +AF                                
Sbjct: 64  GD---------------CPFIVCMSYAFHT----------------------------PD 80

Query: 314 SLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNIL 372
            L  ++      DL  +L +     S  +      +++ G+ H++     +RDLK  NIL
Sbjct: 81  KLSFILDLMNGGDLHYHLSQHGVF-SEADMRFYAAEIILGLEHMHNRFVVYRDLKPANIL 139

Query: 373 LDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV 432
           LD         + I+D G +                   G    MAPEV      L   V
Sbjct: 140 LDE-----HGHVRISDLGLACDFSKKKPHASV-------GTHGYMAPEV------LQKGV 181

Query: 433 NYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNAL-----PQLNTNVPEVMRRLVA 486
            Y   +D ++ G + +++    +PF Q      +E++ +      +L  +    +R L+ 
Sbjct: 182 AYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELPDSFSPELRSLLE 241

Query: 487 KLLENDPSDRPS 498
            LL+ D + R  
Sbjct: 242 GLLQRDVNRRLG 253

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.6 bits (229), Expect = 3e-21
 Identities = 59/327 (18%), Positives = 110/327 (33%), Gaps = 67/327 (20%)

Query: 192 DVKVDDIQIGKFIAKGTNAVVYEATFR-------GVEYALKMMFNYSAASNSHAILKAMS 244
           +   + +  GK +  G    V EAT          +  A+KM+   +  +   A++    
Sbjct: 19  EFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALM---- 74

Query: 245 KELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLN 304
                       +E  +++ + N   H N+V +  A T   P++    +I          
Sbjct: 75  ------------SELKVLSYLGN---HMNIVNLLGACTIGGPTL----VITE-------- 107

Query: 305 PTGGYGRNMSLFILMKKY------NTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNM 358
               Y     L   +++       +      + +    L + + +    Q+ +G+  L  
Sbjct: 108 ----YCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLAS 163

Query: 359 HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMA 418
               HRDL + NILL            I DFG +   K+  +             V  MA
Sbjct: 164 KNCIHRDLAARNILLT--HGRITK---ICDFGLARDIKNDSNYVVKG---NARLPVKWMA 215

Query: 419 PEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNAL-----PQL 473
           PE       +F+ V   +SD W+ G   +E+F   +  Y            +        
Sbjct: 216 PES------IFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLS 269

Query: 474 NTNVPEVMRRLVAKLLENDPSDRPSAE 500
             + P  M  ++    + DP  RP+ +
Sbjct: 270 PEHAPAEMYDIMKTCWDADPLKRPTFK 296

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 92.5 bits (229), Expect = 3e-21
 Identities = 65/311 (20%), Positives = 109/311 (35%), Gaps = 75/311 (24%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKP 253
            D QI + +  G+   V+    R  G  YA+K+                + KE++   K 
Sbjct: 4   QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKV----------------LKKEIVVRLKQ 47

Query: 254 LR--LNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGR 311
           +    +E ++++ V     HP ++ M   F D                            
Sbjct: 48  VEHTNDERLMLSIVT----HPFIIRMWGTFQD---------------------------- 75

Query: 312 NMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNI 371
              +F++M          L  +  +           ++   + +L+     +RDLK +NI
Sbjct: 76  AQQIFMIMDYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLHSKDIIYRDLKPENI 135

Query: 372 LLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF 431
           LLD         + ITDFG         +         L G    +APEV    P     
Sbjct: 136 LLD-----KNGHIKITDFGF--------AKYVPDVTYTLCGTPDYIAPEVVSTKP----- 177

Query: 432 VNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVAKL 488
             Y+   D W+ G + YE+     PFY S     YE  +NA  +      E ++ L+++L
Sbjct: 178 --YNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKILNAELRFPPFFNEDVKDLLSRL 235

Query: 489 LENDPSDRPSA 499
           +  D S R   
Sbjct: 236 ITRDLSQRLGN 246

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 91.8 bits (227), Expect = 4e-21
 Identities = 43/324 (13%), Positives = 89/324 (27%), Gaps = 73/324 (22%)

Query: 192 DVKVDD-IQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELL 248
           +++V +  ++G+ I  G+   +Y  T    G E A+K+             +K    +L 
Sbjct: 2   ELRVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLE-----------CVKTKHPQL- 49

Query: 249 PLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGG 308
                    E  +   ++       +  + +   +                         
Sbjct: 50  -------HIESKIYKMMQG---GVGIPTIRWCGAE------------------------- 74

Query: 309 YGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKS 368
                   ++M+     L +       + S+   +LL  Q++  + +++     HRD+K 
Sbjct: 75  ---GDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKP 131

Query: 369 DNILLDCSEDNTCPQLVITDFGSS--YTNKSGLSMQYSSADIELGGNVALMAPEVALATP 426
           DN L           + I DFG +  Y +           +  L G     +    L   
Sbjct: 132 DNFL--MGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIE 189

Query: 427 GLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV----------NALPQLNTN 476
                    + D  + G V         P+      T  +             +  L   
Sbjct: 190 ------QSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKG 243

Query: 477 VPEVMRRLVAKLLENDPSDRPSAE 500
            P      +         D+P   
Sbjct: 244 YPSEFATYLNFCRSLRFDDKPDYS 267

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.7 bits (227), Expect = 4e-21
 Identities = 54/316 (17%), Positives = 101/316 (31%), Gaps = 73/316 (23%)

Query: 192 DVKVDDIQIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAILKAMSKELLPL 250
           ++  + +++   + +G    V+  T+      A+K +               MS E    
Sbjct: 13  EIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKP-----------GTMSPEAF-- 59

Query: 251 RKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYG 310
                L E  +M  +     H  +V ++                                
Sbjct: 60  -----LQEAQVMKKLR----HEKLVQLY-----------------------------AVV 81

Query: 311 RNMSLFILMK--KYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKS 368
               ++I+ +     + L     E    L + + V +  Q+  G+ ++      HRDL++
Sbjct: 82  SEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRA 141

Query: 369 DNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGL 428
            NIL+   E+  C    + DFG +   +         A       +   APE AL     
Sbjct: 142 ANILVG--ENLVC---KVADFGLARLIEDNEYTARQGA----KFPIKWTAPEAALYGR-- 190

Query: 429 FSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY----EVNALPQLNTNVPEVMRRL 484
                  KSD W+ G +  E+       Y    N +     E           PE +  L
Sbjct: 191 ----FTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDL 246

Query: 485 VAKLLENDPSDRPSAE 500
           + +    +P +RP+ E
Sbjct: 247 MCQCWRKEPEERPTFE 262

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.2 bits (228), Expect = 5e-21
 Identities = 56/318 (17%), Positives = 107/318 (33%), Gaps = 68/318 (21%)

Query: 193 VKVDDIQIGKFIAKGTNAVVYEAT-----FRGVEYALKMMFNYSAASNSHAILKAMSKEL 247
           V +++ ++ K +  G    V+          G  YA+K++   +    +           
Sbjct: 21  VGIENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHT----- 75

Query: 248 LPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTG 307
                     E  ++  +      P +V +H+AF                          
Sbjct: 76  --------RTERQVLEHIRQ---SPFLVTLHYAFQT------------------------ 100

Query: 308 GYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLK 367
                    IL      +L  +L +R  + + HE  +   +++  + HL+     +RD+K
Sbjct: 101 ---ETKLHLILDYINGGELFTHLSQRE-RFTEHEVQIYVGEIVLALEHLHKLGIIYRDIK 156

Query: 368 SDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG 427
            +NILLD +       +V+TDFG S           +    +  G +  MAP++      
Sbjct: 157 LENILLDSN-----GHVVLTDFGLSKE----FVADETERAYDFCGTIEYMAPDIVRGGDS 207

Query: 428 LFSFVNYSKSDAWTAGTVAYEI------FGHDNPFYQSARNTDYEVNALPQLNTNVPEVM 481
                     D W+ G + YE+      F  D      A  +   + + P     +  + 
Sbjct: 208 GHD----KAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEPPYPQEMSALA 263

Query: 482 RRLVAKLLENDPSDRPSA 499
           + L+ +LL  DP  R   
Sbjct: 264 KDLIQRLLMKDPKKRLGC 281

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.4 bits (224), Expect = 1e-20
 Identities = 63/333 (18%), Positives = 117/333 (35%), Gaps = 81/333 (24%)

Query: 177 MFDKLVQVETLPDVDDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAAS 234
           + +KL  + ++ D            + I +G +  VY A     G E A++ M       
Sbjct: 5   ILEKLRSIVSVGDPKK----KYTRFEKIGQGASGTVYTAMDVATGQEVAIRQM------- 53

Query: 235 NSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLI 294
                    + +  P ++ + +NE ++M   +    +PN+V    ++             
Sbjct: 54  ---------NLQQQPKKELI-INEILVMRENK----NPNIVNYLDSYLV----------- 88

Query: 295 YPSALPARLNPTGGYGRNMSLFILMK-KYNTDLRNYLRERCAQLSMHERVLLFTQLLEGV 353
                               L+++M+      L + + E C      +   +  + L+ +
Sbjct: 89  -----------------GDELWVVMEYLAGGSLTDVVTETCM--DEGQIAAVCRECLQAL 129

Query: 354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGN 413
             L+ ++  HRD+KSDNILL          + +TDFG         S + +       G 
Sbjct: 130 EFLHSNQVIHRDIKSDNILLGMDG-----SVKLTDFGFCAQITPEQSKRSTMV-----GT 179

Query: 414 VALMAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNAL-- 470
              MAPEV            Y  K D W+ G +A E+   + P+          + A   
Sbjct: 180 PYWMAPEVVTRKA-------YGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNG 232

Query: 471 ---PQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
               Q    +  + R  + + L+ D   R SA+
Sbjct: 233 TPELQNPEKLSAIFRDFLNRCLDMDVEKRGSAK 265

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.3 bits (223), Expect = 1e-20
 Identities = 58/318 (18%), Positives = 111/318 (34%), Gaps = 49/318 (15%)

Query: 187 LPDVDDVKVDDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKE 246
           +PD  +V  + I + + + +G+  +VYE   +GV               +   +K +++ 
Sbjct: 11  VPDEWEVAREKITMSRELGQGSFGMVYEGVAKGV---------VKDEPETRVAIKTVNEA 61

Query: 247 LLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPT 306
                +   LNE  +M          +VV +    +         +L+            
Sbjct: 62  ASMRERIEFLNEASVMKEFN----CHHVVRLLGVVSQ-----GQPTLVIME--------- 103

Query: 307 GGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDL 366
                   L   ++     + N      A  S+ + + +  ++ +G+ +LN ++  HRDL
Sbjct: 104 --LMTRGDLKSYLRSLRPAMAN--NPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDL 159

Query: 367 KSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP 426
            + N ++          + I DFG +         +     +     V  M+PE      
Sbjct: 160 AARNCMVAED-----FTVKIGDFGMTRDIYETDYYRKGGKGL---LPVRWMSPES----- 206

Query: 427 GLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD----YEVNALPQLNTNVPEVMR 482
            L   V  + SD W+ G V +EI       YQ   N           L     N P+++ 
Sbjct: 207 -LKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPDNCPDMLF 265

Query: 483 RLVAKLLENDPSDRPSAE 500
            L+    + +P  RPS  
Sbjct: 266 ELMRMCWQYNPKMRPSFL 283

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.5 bits (224), Expect = 1e-20
 Identities = 56/359 (15%), Positives = 112/359 (31%), Gaps = 117/359 (32%)

Query: 192 DVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLP 249
           ++K DD +    +  G   VV++ + +  G+  A K+                +  E+ P
Sbjct: 2   ELKDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKL----------------IHLEIKP 45

Query: 250 LRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGY 309
             +   + E  +++        P +V  + AF                            
Sbjct: 46  AIRNQIIRELQVLHECN----SPYIVGFYGAFYS-------------------------- 75

Query: 310 GRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHL-NMHRTAHRDLKS 368
             +  + I M+  +    + + ++  ++       +   +++G+T+L   H+  HRD+K 
Sbjct: 76  --DGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKP 133

Query: 369 DNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGL 428
            NIL++        ++ + DFG S      ++  +        G  + M+PE    T   
Sbjct: 134 SNILVNSRG-----EIKLCDFGVSGQLIDSMANSFV-------GTRSYMSPERLQGTH-- 179

Query: 429 FSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNT------------------------ 463
                YS +SD W+ G    E+     P                                
Sbjct: 180 -----YSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPG 234

Query: 464 --------------------DYEVNALPQL--NTNVPEVMRRLVAKLLENDPSDRPSAE 500
                               DY VN  P    +       +  V K L  +P++R   +
Sbjct: 235 RPLSSYGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLK 293

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.8 bits (219), Expect = 5e-20
 Identities = 54/325 (16%), Positives = 103/325 (31%), Gaps = 52/325 (16%)

Query: 187 LPDVD--DVKVDDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMS 244
           LP+    ++  D + +GK + +G    V  A   G++          A       +K + 
Sbjct: 2   LPEDPRWELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVA-------VKMLK 54

Query: 245 KELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLN 304
            +         ++E  +M  +     H N++ +  A T   P      +I          
Sbjct: 55  SDATEKDLSDLISEMEMMKMIGK---HKNIINLLGACTQDGPLY----VIVE-------- 99

Query: 305 PTGGYGRNMSLFILMKKYNTD----LRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHR 360
               Y    +L   ++           N       QLS  + V    Q+  G+ +L   +
Sbjct: 100 ----YASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKK 155

Query: 361 TAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPE 420
             HRDL + N+L+            +             +             V  MAPE
Sbjct: 156 CIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGR--------LPVKWMAPE 207

Query: 421 VALATPGLFSFVNYS-KSDAWTAGTVAYEIF-GHDNPFYQSARNTDYEV---NALPQLNT 475
                        Y+ +SD W+ G + +EIF    +P+        +++          +
Sbjct: 208 ALFDRI-------YTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPS 260

Query: 476 NVPEVMRRLVAKLLENDPSDRPSAE 500
           N    +  ++       PS RP+ +
Sbjct: 261 NCTNELYMMMRDCWHAVPSQRPTFK 285

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.9 bits (214), Expect = 2e-19
 Identities = 59/316 (18%), Positives = 109/316 (34%), Gaps = 46/316 (14%)

Query: 192 DVKVDDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLR 251
           +   D +++GK + +G    V EA   G++           A+     +K + +      
Sbjct: 9   EFPRDRLKLGKPLGRGAFGQVIEADAFGID---------KTATCRTVAVKMLKEGATHSE 59

Query: 252 KPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGR 311
               ++E  ++  + +   H NVV +  A T          ++                 
Sbjct: 60  HRALMSELKILIHIGH---HLNVVNLLGACTK----PGGPLMVIVEFCK---------FG 103

Query: 312 NMSLFILMKKYNTDLRNYLRERCAQ--LSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSD 369
           N+S ++  K+          E   +  L++   +    Q+ +G+  L   +  HRDL + 
Sbjct: 104 NLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAAR 163

Query: 370 NILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF 429
           NILL   E N      I DFG +   +            +    +  MAPE       +F
Sbjct: 164 NILLS--EKNVV---KICDFGLA---RDIYKDPDYVRKGDARLPLKWMAPET------IF 209

Query: 430 SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNAL-----PQLNTNVPEVMRRL 484
             V   +SD W+ G + +EIF      Y   +  +     L      +        M + 
Sbjct: 210 DRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQT 269

Query: 485 VAKLLENDPSDRPSAE 500
           +      +PS RP+  
Sbjct: 270 MLDCWHGEPSQRPTFS 285

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.8 bits (214), Expect = 3e-19
 Identities = 56/314 (17%), Positives = 103/314 (32%), Gaps = 72/314 (22%)

Query: 193 VKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPL 250
           V ++D    K + KGT   V     +  G  YA+K+                + KE++  
Sbjct: 2   VTMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKI----------------LRKEVIIA 45

Query: 251 RKPLR--LNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGG 308
           +  +   + E  ++ +      HP +  + +AF                           
Sbjct: 46  KDEVAHTVTESRVLQNTR----HPFLTALKYAFQT------------------------- 76

Query: 309 YGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKS 368
              +   F++      +L  +L       +         +++  + +L+     +RD+K 
Sbjct: 77  --HDRLCFVMEYANGGELFFHLSRER-VFTEERARFYGAEIVSALEYLHSRDVVYRDIKL 133

Query: 369 DNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGL 428
           +N++LD         + ITDFG          +   +      G    +APEV       
Sbjct: 134 ENLMLDKD-----GHIKITDFGLCK-----EGISDGATMKTFCGTPEYLAPEVLEDND-- 181

Query: 429 FSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLV 485
                Y    D W  G V YE+     PFY       +E  +    +    +    + L+
Sbjct: 182 -----YGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPRTLSPEAKSLL 236

Query: 486 AKLLENDPSDRPSA 499
           A LL+ DP  R   
Sbjct: 237 AGLLKKDPKQRLGG 250

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.3 bits (210), Expect = 6e-19
 Identities = 57/339 (16%), Positives = 109/339 (32%), Gaps = 96/339 (28%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKP 253
           ++ Q  + I +GT  VVY+A  +  G   ALK +      + +  +     +E+  L+  
Sbjct: 2   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI---RLDTETEGVPSTAIREISLLK-- 56

Query: 254 LRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNM 313
             LN             HPN+V +                                    
Sbjct: 57  -ELN-------------HPNIVKLLDVIHT----------------------------EN 74

Query: 314 SLFILMKKYNTDLRNYLRERCAQ-LSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNIL 372
            L+++ +  + DL+ ++       + +        QLL+G+   + HR  HRDLK  N+L
Sbjct: 75  KLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLL 134

Query: 373 LDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV 432
           ++         + + DFG +      +              +   APE+ L         
Sbjct: 135 INTE-----GAIKLADFGLARAFGVPVRTYTHEV-----VTLWYRAPEILLGCKY----- 179

Query: 433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNT----------------------------- 463
             +  D W+ G +  E+      F   +                                
Sbjct: 180 YSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPS 239

Query: 464 --DYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
              +      ++   + E  R L++++L  DP+ R SA+
Sbjct: 240 FPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAK 278

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 85.6 bits (211), Expect = 9e-19
 Identities = 58/336 (17%), Positives = 118/336 (35%), Gaps = 75/336 (22%)

Query: 169 EIRHAVNNMFDKLVQVETLPDVDDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKM 226
            ++  +    +  ++    P  +  ++D     K +  G+   V     +  G  YA+K+
Sbjct: 14  SVKEFLAKAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKI 73

Query: 227 MFNYSAASNSHAILKAMSKELLPLRKPLR--LNEDMLMNSVENLPPHPNVVVMHFAFTDF 284
                           + K+ +   K +   LNE  ++ +V      P +V + F+F D 
Sbjct: 74  ----------------LDKQKVVKLKQIEHTLNEKRILQAVN----FPFLVKLEFSFKDN 113

Query: 285 VPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVL 344
                                      +    ++      ++ ++LR    + S      
Sbjct: 114 ---------------------------SNLYMVMEYVAGGEMFSHLRRIG-RFSEPHARF 145

Query: 345 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYS 404
              Q++    +L+     +RDLK +N+L+D         + +TDF        G + +  
Sbjct: 146 YAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQ-----GYIQVTDF--------GFAKRVK 192

Query: 405 SADIELGGNVALMAPEVALATPGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQSARNT 463
                L G    +APE+ L+         Y+   D W  G + YE+     PF+      
Sbjct: 193 GRTWTLCGTPEALAPEIILSKG-------YNKAVDWWALGVLIYEMAAGYPPFFADQPIQ 245

Query: 464 DYE--VNALPQLNTNVPEVMRRLVAKLLENDPSDRP 497
            YE  V+   +  ++    ++ L+  LL+ D + R 
Sbjct: 246 IYEKIVSGKVRFPSHFSSDLKDLLRNLLQVDLTKRF 281

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 82.2 bits (202), Expect = 1e-17
 Identities = 54/348 (15%), Positives = 102/348 (29%), Gaps = 111/348 (31%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKP 253
           DD Q+ + + +G  + V+EA       +  +K             ILK + K+ +     
Sbjct: 35  DDYQLVRKLGRGKYSEVFEAINITNNEKVVVK-------------ILKPVKKKKI----- 76

Query: 254 LRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNM 313
               E  ++   ENL   PN++ +     D     P S                      
Sbjct: 77  --KREIKIL---ENLRGGPNIITLADIVKD-----PVSRTPA------------------ 108

Query: 314 SLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
              +     NTD +   +     L+ ++      ++L+ + + +     HRD+K  N+++
Sbjct: 109 --LVFEHVNNTDFKQLYQ----TLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMI 162

Query: 374 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN 433
               D+   +L + D+G +     G              +     PE+ +          
Sbjct: 163 ----DHEHRKLRLIDWGLAEFYHPGQEYNVR------VASRYFKGPELLVDYQM------ 206

Query: 434 YS-KSDAWTAGTVAYEIFGHDNPFYQSARNTD---------------------------- 464
           Y    D W+ G +   +     PF+    N D                            
Sbjct: 207 YDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPR 266

Query: 465 ------------YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
                       +E     +    V       + KLL  D   R +A 
Sbjct: 267 FNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAR 314

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.8 bits (201), Expect = 1e-17
 Identities = 55/339 (16%), Positives = 91/339 (26%), Gaps = 89/339 (26%)

Query: 195 VDDIQIGKFIAKGTNAVVYEATFR---GVEYALKMMFNYSAASNSHAILKAMSKELLPLR 251
               +    I +G    V++A      G   ALK +      +    +  +  +E+  LR
Sbjct: 6   DQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRV---RVQTGEEGMPLSTIREVAVLR 62

Query: 252 KPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGR 311
                              HPNVV +    T                       +     
Sbjct: 63  HLETFE-------------HPNVVRLFDVCTV----------------------SRTDRE 87

Query: 312 NMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNI 371
                +             +     +       +  QLL G+  L+ HR  HRDLK  NI
Sbjct: 88  TKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNI 147

Query: 372 LLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF 431
           L+                       +  S+            +   APEV L +      
Sbjct: 148 LVT--SSGQIKLADFGLARIYSFQMALTSVV---------VTLWYRAPEVLLQSS----- 191

Query: 432 VNYS-KSDAWTAGTVAYEIFGHDNPFYQS-----------------------------AR 461
             Y+   D W+ G +  E+F     F  S                               
Sbjct: 192 --YATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQA 249

Query: 462 NTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
                   + +  T++ E+ + L+ K L  +P+ R SA 
Sbjct: 250 FHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAY 288

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.1 bits (199), Expect = 2e-17
 Identities = 59/350 (16%), Positives = 107/350 (30%), Gaps = 90/350 (25%)

Query: 188 PDVDDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSK 245
           P  D+V     +    I +GT   V++A  R  G + ALK             +L    K
Sbjct: 4   PFCDEV--SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKK------------VLMENEK 49

Query: 246 ELLPLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNP 305
           E  P+     L E  ++  ++    H NVV +                            
Sbjct: 50  EGFPIT---ALREIKILQLLK----HENVVNLIEICRTKASPYNRC-------------- 88

Query: 306 TGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRD 365
                   S++++      DL   L     + ++ E   +   LL G+ +++ ++  HRD
Sbjct: 89  ------KGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRNKILHRD 142

Query: 366 LKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALAT 425
           +K+ N+L+          L + DFG +    S       +        +    PE+ L  
Sbjct: 143 MKAANVLITRDG-----VLKLADFGLA-RAFSLAKNSQPNRYTNRVVTLWYRPPELLLGE 196

Query: 426 PGLFSFVNYS-KSDAWTAGTVAYEIFGHDNPFYQ-------------------------S 459
                   Y    D W AG +  E++                                  
Sbjct: 197 RD------YGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVD 250

Query: 460 ARNTDYEVNALPQLNTNVPEVM---------RRLVAKLLENDPSDRPSAE 500
                 ++  +      V + +           L+ KLL  DP+ R  ++
Sbjct: 251 NYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSD 300

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.6 bits (198), Expect = 5e-17
 Identities = 51/337 (15%), Positives = 92/337 (27%), Gaps = 92/337 (27%)

Query: 199 QIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRL 256
               +I +G   +V  A      V  A+K +  +   +     L                
Sbjct: 11  TNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTL---------------- 54

Query: 257 NEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLF 316
            E  ++        H N++ ++                                +   ++
Sbjct: 55  REIKILLRFR----HENIIGINDIIRA-----------------------PTIEQMKDVY 87

Query: 317 ILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCS 376
           ++      DL   L+ +   LS         Q+L G+ +++     HRDLK  N+LL+ +
Sbjct: 88  LVTHLMGADLYKLLKTQ--HLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTT 145

Query: 377 EDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSK 436
                  L I DFG +    +     ++    E        APE+      L S      
Sbjct: 146 C-----DLKICDFGLA--RVADPDHDHTGFLTEYVATRWYRAPEIM-----LNSKGYTKS 193

Query: 437 SDAWTAGTVAYEIFGHDNPFY---------------------------------QSARNT 463
            D W+ G +  E+  +   F                                        
Sbjct: 194 IDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLP 253

Query: 464 DYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
                   +L  N       L+ K+L  +P  R   E
Sbjct: 254 HKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVE 290

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 79.5 bits (195), Expect = 5e-17
 Identities = 59/337 (17%), Positives = 101/337 (29%), Gaps = 94/337 (27%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPL 254
           +     + I +GT  VVY+A    G  +ALK +           I     +E+  L++  
Sbjct: 2   EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKI---RLEKEDEGIPSTTIREISILKE-- 56

Query: 255 RLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMS 314
            L              H N+V ++                                    
Sbjct: 57  -LK-------------HSNIVKLYDVIHT----------------------------KKR 74

Query: 315 LFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLD 374
           L ++ +  + DL+  L      L          QLL G+ + +  R  HRDLK  N+L++
Sbjct: 75  LVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLIN 134

Query: 375 CSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNY 434
                   +L I DFG +      +                  AP+V + +         
Sbjct: 135 RE-----GELKIADFGLARAFGIPVRKYTHEIVTLWY-----RAPDVLMGSKKYS----- 179

Query: 435 SKSDAWTAGTVAYEIFGHDNPFY-------------------------------QSARNT 463
           +  D W+ G +  E+      F                                     T
Sbjct: 180 TTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFT 239

Query: 464 DYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
            YE          + E    L++K+L+ DP+ R +A+
Sbjct: 240 VYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAK 276

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.1 bits (191), Expect = 2e-16
 Identities = 53/339 (15%), Positives = 99/339 (29%), Gaps = 96/339 (28%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKP 253
              +  + I +GT   V++A  R      ALK +       +   +  +  +E+  L+  
Sbjct: 2   QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRV---RLDDDDEGVPSSALREICLLK-- 56

Query: 254 LRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNM 313
             L              H N+V +H                                 + 
Sbjct: 57  -ELK-------------HKNIVRLHDVLHS----------------------------DK 74

Query: 314 SLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILL 373
            L ++ +  + DL+ Y       L          QLL+G+   +     HRDLK  N+L+
Sbjct: 75  KLTLVFEFCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLI 134

Query: 374 DCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN 433
           + + +       + +FG +      +              +    P+V          + 
Sbjct: 135 NRNGEL-----KLANFGLARAFGIPVRCYS-----AEVVTLWYRPPDVLFGAK-----LY 179

Query: 434 YSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY---------------------------- 465
            +  D W+AG +  E+     P +      D                             
Sbjct: 180 STSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPY 239

Query: 466 ----EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
                  +L  +   +    R L+  LL+ +P  R SAE
Sbjct: 240 PMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAE 278

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.0 bits (191), Expect = 2e-16
 Identities = 55/332 (16%), Positives = 99/332 (29%), Gaps = 93/332 (28%)

Query: 202 KFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNED 259
            F+ +G  A VY+A  +      A+K +     +     I +   +E+  L+    L+  
Sbjct: 4   DFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQ---ELS-- 58

Query: 260 MLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILM 319
                      HPN++ +  AF                                ++ ++ 
Sbjct: 59  -----------HPNIIGLLDAFGH----------------------------KSNISLVF 79

Query: 320 KKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDN 379
               TDL   +++    L+           L+G+ +L+ H   HRDLK +N+LLD +   
Sbjct: 80  DFMETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENG-- 137

Query: 380 TCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS-KSD 438
               L + DFG + +  S                    APE+      LF    Y    D
Sbjct: 138 ---VLKLADFGLAKSFGSPNRAYTHQV-----VTRWYRAPEL------LFGARMYGVGVD 183

Query: 439 AWTAGTVAYEIFGHDNPFY------------------------------QSARNTDYEVN 468
            W  G +  E+                                             +   
Sbjct: 184 MWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGI 243

Query: 469 ALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
            L  + +   + +  L+  L   +P  R +A 
Sbjct: 244 PLHHIFSAAGDDLLDLIQGLFLFNPCARITAT 275

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.9 bits (191), Expect = 4e-16
 Identities = 63/343 (18%), Positives = 104/343 (30%), Gaps = 92/343 (26%)

Query: 191 DDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELL 248
           D  +       K I  G+  VVY+A     G   A+K +                     
Sbjct: 15  DRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQ------------------- 55

Query: 249 PLRKPLRLNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGG 308
              K  +  E  +M  ++    H N+V + + F        +  L               
Sbjct: 56  --DKRFKNRELQIMRKLD----HCNIVRLRYFFYSSGEKKDEVYL--------------- 94

Query: 309 YGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKS 368
              N+ L  + +      R+Y R +   L +    L   QL   + +++     HRD+K 
Sbjct: 95  ---NLVLDYVPETVYRVARHYSRAK-QTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKP 150

Query: 369 DNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGL 428
            N+LLD         L + DFGS+        +     ++    +    APE+       
Sbjct: 151 QNLLLDPD----TAVLKLCDFGSAK------QLVRGEPNVSYICSRYYRAPELIFGATD- 199

Query: 429 FSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSA----------------------RNTDYE 466
                 S  D W+AG V  E+      F   +                       N +Y 
Sbjct: 200 ----YTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYT 255

Query: 467 VNALPQLNT---------NVPEVMRRLVAKLLENDPSDRPSAE 500
               PQ+             P     L ++LLE  P+ R +  
Sbjct: 256 EFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPL 298

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.2 bits (176), Expect = 3e-14
 Identities = 55/337 (16%), Positives = 95/337 (28%), Gaps = 96/337 (28%)

Query: 199 QIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRL 256
           +  + +  G    V  A     G + A+K ++       S    K   +EL  L+    +
Sbjct: 21  RDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYR---PFQSELFAKRAYRELRLLK---HM 74

Query: 257 NEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLF 316
                         H NV+ +   FT                                 +
Sbjct: 75  R-------------HENVIGLLDVFTP----------------------DETLDDFTDFY 99

Query: 317 ILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCS 376
           ++M    TDL   ++    +L       L  Q+L+G+ +++     HRDLK  N+ ++  
Sbjct: 100 LVMPFMGTDLGKLMKHE--KLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNED 157

Query: 377 EDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSK 436
            +         DFG +    S ++                 APEV L             
Sbjct: 158 CELKI-----LDFGLARQADSEMTGYV--------VTRWYRAPEVILNWMRYTQ-----T 199

Query: 437 SDAWTAGTVAYEIFGHDNPFYQSARNT--------------------------------- 463
            D W+ G +  E+      F  S                                     
Sbjct: 200 VDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLP 259

Query: 464 DYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
           + E      + TN   +   L+ K+L  D   R +A 
Sbjct: 260 ELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAG 296

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.4 bits (166), Expect = 4e-13
 Identities = 53/341 (15%), Positives = 97/341 (28%), Gaps = 98/341 (28%)

Query: 196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKP 253
           +  Q    +  G    V  A     G+  A+K +                S+    +   
Sbjct: 18  ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKL----------------SRPFQSIIHA 61

Query: 254 LR-LNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRN 312
            R   E  L+  ++    H NV+ +   FT                              
Sbjct: 62  KRTYRELRLLKHMK----HENVIGLLDVFTP----------------------ARSLEEF 95

Query: 313 MSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNIL 372
             ++++      DL N ++ +  +L+      L  Q+L G+ +++     HRDLK  N+ 
Sbjct: 96  NDVYLVTHLMGADLNNIVKCQ--KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLA 153

Query: 373 LDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV 432
           ++             +         GL+                 APE+ L         
Sbjct: 154 VN-------------EDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMH----- 195

Query: 433 NYSKSDAWTAGTVAYEIFGHDNPFY----------------------------QSARNTD 464
                D W+ G +  E+      F                             +SARN  
Sbjct: 196 YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYI 255

Query: 465 YEVNALPQLN-----TNVPEVMRRLVAKLLENDPSDRPSAE 500
             +  +P++N          +   L+ K+L  D   R +A 
Sbjct: 256 QSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 296

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.1 bits (157), Expect = 5e-12
 Identities = 42/345 (12%), Positives = 105/345 (30%), Gaps = 50/345 (14%)

Query: 199 QIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRL 256
            + + +  G  + V+ A         A+K++             +A   E+  L++    
Sbjct: 16  ILVRKLGWGHFSTVWLAKDMVNNTHVAMKIV------RGDKVYTEAAEDEIKLLQRVNDA 69

Query: 257 NEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLF 316
           +     N+ E+     +++ +   F    P+     +++                     
Sbjct: 70  D-----NTKEDSMGANHILKLLDHFNHKGPNGVHVVMVF--------------------- 103

Query: 317 ILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHR-TAHRDLKSDNILLDC 375
                    L    +     + +     +  QLL G+ +++      H D+K +N+L++ 
Sbjct: 104 --EVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLME- 160

Query: 376 SEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS 435
             D+    + I           G +  Y              +PEV L  P         
Sbjct: 161 IVDSPENLIQIKIA------DLGNACWYDEHYTNSIQTREYRSPEVLLGAP------WGC 208

Query: 436 KSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSD 495
            +D W+   + +E+   D  F     ++  + +        +   +   + +  +   + 
Sbjct: 209 GADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTF 268

Query: 496 RPSAELAATVCQLYLWAPKHWLYGATPSHNEIMQWLLTLTTKVLC 540
             S  L   + +L  W  +  L        +  + +    + +L 
Sbjct: 269 FNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQ 313

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (140), Expect = 8e-10
 Identities = 63/349 (18%), Positives = 97/349 (27%), Gaps = 109/349 (31%)

Query: 199 QIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLR- 255
           Q  K I  G   +V  A         A+K +                S+         R 
Sbjct: 20  QNLKPIGSGAQGIVCAAYDAVLDRNVAIKKL----------------SRPFQNQTHAKRA 63

Query: 256 LNEDMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSL 315
             E +LM  V     H N++ +   FT                      P         +
Sbjct: 64  YRELVLMKCVN----HKNIISLLNVFT----------------------PQKTLEEFQDV 97

Query: 316 FILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDC 375
           +++M+  + +L   ++             L  Q+L G+ HL+     HRDLK  NI++  
Sbjct: 98  YLVMELMDANLCQVIQMEL---DHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKS 154

Query: 376 SEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYS 435
                       DFG + T  +   M                APEV L            
Sbjct: 155 DCTLKI-----LDFGLARTAGTSFMMTP------YVVTRYYRAPEVILGMG------YKE 197

Query: 436 KSDAWTAGTVAYEIFGHDNPF---------------------------YQSARN------ 462
             D W+ G +  E+  H   F                             + RN      
Sbjct: 198 NVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRP 257

Query: 463 -----------TDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE 500
                       D    A  + N       R L++K+L  DP+ R S +
Sbjct: 258 KYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVD 306

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 52.5 bits (125), Expect = 2e-08
 Identities = 27/213 (12%), Positives = 49/213 (23%), Gaps = 53/213 (24%)

Query: 200 IGKFIAKGTNAVVYEAT-FRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNE 258
           IGK + +G  + V+     +  E  +K       +       +              L  
Sbjct: 4   IGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHF-----SVLAI 58

Query: 259 DMLMNSVENL--PPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLF 316
               N    L       V  ++    +                                 
Sbjct: 59  RSARNEFRALQKLQGLAVPKVYAWEGNA-------------------------------- 86

Query: 317 ILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCS 376
           +LM+  +      +R             +   +LE V         H DL   N+L+   
Sbjct: 87  VLMELIDAKELYRVRVENPDE-------VLDMILEEVAKFYHRGIVHGDLSQYNVLVS-- 137

Query: 377 EDNTCPQLVITDFGSSYTNKSGLSMQYSSADIE 409
                  + I DF  S         +    D+ 
Sbjct: 138 ----EEGIWIIDFPQSVEVGEEGWREILERDVR 166

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	588
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	100.0
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	100.0
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	100.0
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	100.0
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	100.0
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	100.0
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	100.0
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	100.0
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	100.0
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	100.0
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	100.0
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	100.0
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	100.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	100.0
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	100.0
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	100.0
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	100.0
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	100.0
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	100.0
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	100.0
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	100.0
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	100.0
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	100.0
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	100.0
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	100.0
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	100.0
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	100.0
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	100.0
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	100.0
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	100.0
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	100.0
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	100.0
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	100.0
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	100.0
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	100.0
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	100.0
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	100.0
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	100.0
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	100.0
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	100.0
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	100.0
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	100.0
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	100.0
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	100.0
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	100.0
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	100.0
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	100.0
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	100.0
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	100.0
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.89
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	97.82
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	97.32
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	96.87
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	96.03
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	94.91
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	94.45
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	94.16
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	93.18
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	92.48
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	92.3
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	91.79
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	91.11

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-55  Score=444.42  Aligned_cols=252  Identities=24%  Similarity=0.386  Sum_probs=212.1

Q ss_pred             cccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCC
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPP  270 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~  270 (588)
                      +.+++|++++.||+|+||+||+|+++  ++.||||++.+..           ...   ....+.+.+|+.+++.+    +
T Consensus         3 ~~l~dy~i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~-----------~~~---~~~~~~~~~E~~il~~l----~   64 (263)
T d2j4za1           3 WALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQ-----------LEK---AGVEHQLRREVEIQSHL----R   64 (263)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHH-----------HHH---TTCHHHHHHHHHHHHTC----C
T ss_pred             cchhHeEEEEEEecCCCcEEEEEEECCCCcEEEEEEEchHH-----------ccC---hHHHHHHHHHHHHHHhc----C
Confidence            45689999999999999999999997  7899999985311           011   11344567899999987    9


Q ss_pred             CCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4039         271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQL  349 (588)
Q Consensus       271 HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql  349 (588)
                      |||||++++++.+..                            .+|+||||| +|+|.+++.... .+++.++..++.||
T Consensus        65 hpnIv~~~~~~~~~~----------------------------~~~ivmEy~~~g~L~~~l~~~~-~l~e~~~~~i~~qi  115 (263)
T d2j4za1          65 HPNILRLYGYFHDAT----------------------------RVYLILEYAPLGTVYRELQKLS-KFDEQRTATYITEL  115 (263)
T ss_dssp             CTTBCCEEEEEECSS----------------------------EEEEEEECCTTCBHHHHHHHHS-SCCHHHHHHHHHHH
T ss_pred             CCCCCeEEEEEEECC----------------------------EEEEEEeecCCCcHHHHHhhcC-CCCHHHHHHHHHHH
Confidence            999999999998732                            499999999 589999998765 89999999999999


Q ss_pred             HHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCc
Q psy4039         350 LEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF  429 (588)
Q Consensus       350 ~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~  429 (588)
                      ++||+|||++||+||||||+|||++.+     +.+||+|||+|+......       ....+||+.|||||++.+..   
T Consensus       116 ~~al~~lH~~~ivHrDiKp~Nill~~~-----~~~kl~DFG~a~~~~~~~-------~~~~~Gt~~Y~APE~~~~~~---  180 (263)
T d2j4za1         116 ANALSYCHSKRVIHRDIKPENLLLGSA-----GELKIADFGWSVHAPSSR-------RTTLCGTLDYLPPEMIEGRM---  180 (263)
T ss_dssp             HHHHHHHHHTTCCCCCCCGGGEEECTT-----SCEEECCCCSCSCCCCCC-------CEETTEEGGGCCHHHHTTCC---
T ss_pred             HHHHHHHHHCCeeeeeeccccceecCC-----CCEeecccceeeecCCCc-------ccccCCCCcccCHHHHcCCC---
Confidence            999999999999999999999999988     799999999997654422       12467999999999998765   


Q ss_pred             cCCCCCcCchhhHHHHHHHHhcCCCCCcccccccccc--ccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHh
Q psy4039         430 SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       430 ~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~--~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~  507 (588)
                         ++.++|||||||++|||++|+.||.+......+.  ....+.++..+|+++++||.+||+.||++|||++|+++   
T Consensus       181 ---~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~~dp~~R~t~~eil~---  254 (263)
T d2j4za1         181 ---HDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLE---  254 (263)
T ss_dssp             ---CCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTTCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT---
T ss_pred             ---CCchhhhhhHhHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCccCCHHHHHHHHHHccCCHhHCcCHHHHHc---
Confidence               4578999999999999999999998753332222  12334567789999999999999999999999999998   


Q ss_pred             hhhhcCCcccc
Q psy4039         508 LYLWAPKHWLY  518 (588)
Q Consensus       508 ~~~~~~h~w~~  518 (588)
                            |||++
T Consensus       255 ------hp~~~  259 (263)
T d2j4za1         255 ------HPWIT  259 (263)
T ss_dssp             ------CHHHH
T ss_pred             ------CcCcC
Confidence                  99986

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-55  Score=442.93  Aligned_cols=257  Identities=20%  Similarity=0.232  Sum_probs=207.5

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      +++|++.+.||+|+||+||+|+++  |+.||||++......                ...+.+.+|+.+|+.+    +||
T Consensus         4 ~~dy~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~----------------~~~~~~~~Ei~~l~~l----~Hp   63 (271)
T d1nvra_           4 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAV----------------DCPENIKKEICINKML----NHE   63 (271)
T ss_dssp             TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-----------------------CHHHHHHHHHTC----CCT
T ss_pred             CcceEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcc----------------hHHHHHHHHHHHHHhC----CCC
Confidence            378999999999999999999997  889999999542211                0224567899999987    999


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLE  351 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~  351 (588)
                      |||++++++.+..                            .+|+||||| +|+|.+++..+. .+++.++..++.||++
T Consensus        64 nIv~~~~~~~~~~----------------------------~~~ivmEy~~gg~L~~~l~~~~-~l~e~~~~~i~~qi~~  114 (271)
T d1nvra_          64 NVVKFYGHRREGN----------------------------IQYLFLEYCSGGELFDRIEPDI-GMPEPDAQRFFHQLMA  114 (271)
T ss_dssp             TBCCEEEEEEETT----------------------------EEEEEEECCTTEEGGGGSBTTT-BCCHHHHHHHHHHHHH
T ss_pred             CEeeEeeeeccCc----------------------------eeEEEEeccCCCcHHHHHhcCC-CCCHHHHHHHHHHHHH
Confidence            9999999998742                            499999999 579999997554 8999999999999999


Q ss_pred             HHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccC
Q psy4039         352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF  431 (588)
Q Consensus       352 gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~  431 (588)
                      ||.|||++||+||||||+|||++.+     +.+||+|||+|+.........   .....+||+.|||||++.+...    
T Consensus       115 al~ylH~~~IiHrDiKp~NILl~~~-----~~~KL~DFG~a~~~~~~~~~~---~~~~~~GT~~Y~APE~~~~~~~----  182 (271)
T d1nvra_         115 GVVYLHGIGITHRDIKPENLLLDER-----DNLKISDFGLATVFRYNNRER---LLNKMCGTLPYVAPELLKRREF----  182 (271)
T ss_dssp             HHHHHHHTTEECSCCCGGGEEECTT-----CCEEECCCTTCEECEETTEEC---CBCCCCSCGGGSCTHHHHCSSB----
T ss_pred             HHHHHHHcCCccCcccHHHEEECCC-----CCEEEccchhheeeccCCccc---cccceeeCcCccCHhHhcCCCC----
Confidence            9999999999999999999999987     799999999998764422211   1225689999999999987652    


Q ss_pred             CCCCcCchhhHHHHHHHHhcCCCCCccccccccc-----cccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHH
Q psy4039         432 VNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY-----EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVC  506 (588)
Q Consensus       432 ~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~-----~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L  506 (588)
                       ++.++||||+||++|||++|++||.........     ........+..+|+++++||.+||+.||++|||++|+++  
T Consensus       183 -~~~~~DiwSlGvilyeml~G~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~eil~--  259 (271)
T d1nvra_         183 -HAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPLALLHKILVENPSARITIPDIKK--  259 (271)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHSSCSCSSSSTTSHHHHHHHTTCTTSTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT--
T ss_pred             -CCCceeeeHhHHHHHHHHhCCCCCCCCChHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHcCCChhHCcCHHHHhc--
Confidence             235799999999999999999999764322111     111122233568999999999999999999999999988  


Q ss_pred             hhhhhcCCccccCCCC
Q psy4039         507 QLYLWAPKHWLYGATP  522 (588)
Q Consensus       507 ~~~~~~~h~w~~~~~~  522 (588)
                             |||++...+
T Consensus       260 -------hpwf~~~l~  268 (271)
T d1nvra_         260 -------DRWYNKPLK  268 (271)
T ss_dssp             -------CTTTTCCCC
T ss_pred             -------CHhhCcCCC
Confidence                   999985543

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-54  Score=439.63  Aligned_cols=252  Identities=24%  Similarity=0.303  Sum_probs=209.6

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||+||+|.+.  |+.||||++......                 ..+.+.+|+.+|+.+    +|||
T Consensus        20 ~~Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~-----------------~~~~~~~E~~il~~l----~Hpn   78 (293)
T d1yhwa1          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQP-----------------KKELIINEILVMREN----KNPN   78 (293)
T ss_dssp             TTBCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCS-----------------CHHHHHHHHHHHHHC----CCTT
T ss_pred             cccEEEEEEecCcCcEEEEEEECCCCCEEEEEEEecccCh-----------------HHHHHHHHHHHHHhC----CCCC
Confidence            57999999999999999999987  899999998542211                 234567899999998    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      ||+++++|.+..                            .+|+||||| +|+|.+++..+  .+++.++..++.||+.|
T Consensus        79 Iv~~~~~~~~~~----------------------------~~~ivmEy~~gg~L~~~~~~~--~l~~~~~~~i~~qi~~a  128 (293)
T d1yhwa1          79 IVNYLDSYLVGD----------------------------ELWVVMEYLAGGSLTDVVTET--CMDEGQIAAVCRECLQA  128 (293)
T ss_dssp             BCCEEEEEEETT----------------------------EEEEEEECCTTCBHHHHHHHS--CCCHHHHHHHHHHHHHH
T ss_pred             EeeEeEEEEECC----------------------------EEEEEEEecCCCcHHHHhhcc--CCCHHHHHHHHHHHHHH
Confidence            999999998742                            499999999 68999988765  79999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||++||+||||||+|||++.+     +.+||+|||+|+........     ....+||+.|||||++.+..      
T Consensus       129 L~yLH~~~iiHrDiKp~NILl~~~-----~~vkl~DFG~a~~~~~~~~~-----~~~~~gt~~Y~aPE~~~~~~------  192 (293)
T d1yhwa1         129 LEFLHSNQVIHRDIKSDNILLGMD-----GSVKLTDFGFCAQITPEQSK-----RSTMVGTPYWMAPEVVTRKA------  192 (293)
T ss_dssp             HHHHHHTTEECCCCSGGGEEECTT-----CCEEECCCTTCEECCSTTCC-----BCCCCSCGGGCCHHHHSSSC------
T ss_pred             HHHHHHCCCcccCCcHHHeEECCC-----CcEeeccchhheeecccccc-----ccccccCCCccChhhhcCCC------
Confidence            999999999999999999999987     79999999999876543221     12567999999999998765      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcccccccccc-----ccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHh
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE-----VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~-----~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~  507 (588)
                      ++.++||||+||++|||++|+.||.+........     .......+..+|+++++||.+||+.||.+|||++|+++   
T Consensus       193 ~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~---  269 (293)
T d1yhwa1         193 YGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKRGSAKELLQ---  269 (293)
T ss_dssp             BCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHHCSCCCSSGGGSCHHHHHHHHHHTCSSTTTSCCHHHHTT---
T ss_pred             CCchhceehHhHHHHHHhhCCCCCCCCCHHHHHHHHHhCCCCCCCCcccCCHHHHHHHHHHccCChhHCcCHHHHhc---
Confidence            4578999999999999999999997643221111     11122345678999999999999999999999999988   


Q ss_pred             hhhhcCCccccCCCCC
Q psy4039         508 LYLWAPKHWLYGATPS  523 (588)
Q Consensus       508 ~~~~~~h~w~~~~~~~  523 (588)
                            |||++...|.
T Consensus       270 ------Hp~~~~~~~~  279 (293)
T d1yhwa1         270 ------HQFLKIAKPL  279 (293)
T ss_dssp             ------CGGGGGCCCG
T ss_pred             ------CHhhCCCCCC
Confidence                  9999855443

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-54  Score=436.88  Aligned_cols=261  Identities=24%  Similarity=0.311  Sum_probs=207.4

Q ss_pred             CccccccCCeEEeeeecccCceeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCC
Q psy4039         189 DVDDVKVDDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENL  268 (588)
Q Consensus       189 ~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l  268 (588)
                      ++|+++.++|++++.||+|+||+||+|++++ .||||+++.......               ..+.+.+|+.+|+++   
T Consensus         1 ddwei~~~~~~~~~~lG~G~fg~Vy~~~~~~-~vAvK~~~~~~~~~~---------------~~~~~~~E~~~l~~l---   61 (276)
T d1uwha_           1 DDWEIPDGQITVGQRIGSGSFGTVYKGKWHG-DVAVKMLNVTAPTPQ---------------QLQAFKNEVGVLRKT---   61 (276)
T ss_dssp             CCCBCCTTCCCCCSEEEECSSCEEEEEESSS-EEEEEECCCSSCCTT---------------HHHHHHHHHHHHTTC---
T ss_pred             CCcccccccEEEEEEEeeCCCcEEEEEEECC-EEEEEEEEcccCCHH---------------HHHHHHHHHHHHHhC---
Confidence            4688899999999999999999999998865 599999864322211               234567799999987   


Q ss_pred             CCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHH
Q psy4039         269 PPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFT  347 (588)
Q Consensus       269 ~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~  347 (588)
                       +|||||++++++.+.                             .+++||||| +|+|.+++......+++.++..|+.
T Consensus        62 -~HpnIv~~~~~~~~~-----------------------------~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~i~~  111 (276)
T d1uwha_          62 -RHVNILLFMGYSTAP-----------------------------QLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIAR  111 (276)
T ss_dssp             -CCTTBCCEEEEECSS-----------------------------SCEEEEECCCEEEHHHHHHTSCCCCCHHHHHHHHH
T ss_pred             -CCCCEeeeeEEEecc-----------------------------EEEEEEecCCCCCHHHHHhhccCCCCHHHHHHHHH
Confidence             999999999987542                             279999999 5899999987766899999999999


Q ss_pred             HHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCC
Q psy4039         348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG  427 (588)
Q Consensus       348 ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~  427 (588)
                      ||++||+|||+++||||||||+|||++.+     +.+||+|||+|+........   .......||+.|||||++.+...
T Consensus       112 qi~~gl~yLH~~~ivHrDlKp~NiLl~~~-----~~~Kl~DFGla~~~~~~~~~---~~~~~~~gt~~y~APE~l~~~~~  183 (276)
T d1uwha_         112 QTAQGMDYLHAKSIIHRDLKSNNIFLHED-----LTVKIGDFGLATVKSRWSGS---HQFEQLSGSILWMAPEVIRMQDK  183 (276)
T ss_dssp             HHHHHHHHHHHTTCCCSCCCGGGEEEETT-----SSEEECCCCCSCC---------------CCCCGGGCCHHHHTTCSS
T ss_pred             HHHHHHHHHhcCCEeccccCHHHEEEcCC-----CCEEEccccceeeccccCCc---ccccccccCcccCCHHHHhcccC
Confidence            99999999999999999999999999988     89999999999876542211   11225679999999999975432


Q ss_pred             CccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccc--------ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCH
Q psy4039         428 LFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD--------YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSA  499 (588)
Q Consensus       428 ~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~--------~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~  499 (588)
                      .   .++.++|||||||++|||+||+.||.+......        .........+..+|+++++||.+||+.||++|||+
T Consensus       184 ~---~~~~~sDiwS~Gv~l~el~tg~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~li~~cl~~dp~~RPt~  260 (276)
T d1uwha_         184 N---PYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLF  260 (276)
T ss_dssp             C---CCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHHTSCCCCGGGSCTTCCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             C---CCCchhhhhhhHHHHHHHHHCCCCCCCCChHHHHHHHHhcCCCCCcchhccccchHHHHHHHHHHcCCCHhHCcCH
Confidence            1   145689999999999999999999976322111        11112234567899999999999999999999999


Q ss_pred             HHHHHHHhhh
Q psy4039         500 ELAATVCQLY  509 (588)
Q Consensus       500 ~e~l~~L~~~  509 (588)
                      +++++.|+..
T Consensus       261 ~~il~~Le~l  270 (276)
T d1uwha_         261 PQILASIELL  270 (276)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999987754

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-54  Score=435.48  Aligned_cols=252  Identities=21%  Similarity=0.285  Sum_probs=198.4

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||+||+|+++  |+.||||++........               ..+.+.+|+.+|+.+    +|||
T Consensus         4 edy~~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~---------------~~~~~~~E~~il~~l----~Hpn   64 (269)
T d2java1           4 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEA---------------EKQMLVSEVNLLREL----KHPN   64 (269)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSCHH---------------HHHHHHHHHHHTTSC----CCTT
T ss_pred             hhCEEeEEEecCCCeEEEEEEECCCCCEEEEEEEChhhCCHH---------------HHHHHHHHHHHHHHC----CCCC
Confidence            78999999999999999999997  88999999964322111               123466799999887    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh---cCCCCHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER---CAQLSMHERVLLFTQL  349 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~---~~~l~~~~~~~i~~ql  349 (588)
                      ||++++++.+..                          +..+|+||||| +|+|.+++...   ...+++..++.++.||
T Consensus        65 Iv~~~~~~~~~~--------------------------~~~~~ivmEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi  118 (269)
T d2java1          65 IVRYYDRIIDRT--------------------------NTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQL  118 (269)
T ss_dssp             BCCEEEEEEC------------------------------CEEEEEECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred             EeeEEEEEEeCC--------------------------CCEEEEEEecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHH
Confidence            999999987632                          12489999999 58999999753   3479999999999999


Q ss_pred             HHHHHHHHhCC-----ceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhc
Q psy4039         350 LEGVTHLNMHR-----TAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALA  424 (588)
Q Consensus       350 ~~gL~yLH~~~-----IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~  424 (588)
                      +.||.|||+++     |+||||||+|||++.+     +.+||+|||+|+........     ....+||+.|||||++.+
T Consensus       119 ~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~-----~~vkl~DFG~a~~~~~~~~~-----~~~~~gt~~Y~APE~l~~  188 (269)
T d2java1         119 TLALKECHRRSDGGHTVLHRDLKPANVFLDGK-----QNVKLGDFGLARILNHDTSF-----AKAFVGTPYYMSPEQMNR  188 (269)
T ss_dssp             HHHHHHHHHHCC---------CCGGGEEECTT-----SCEEECCHHHHHHC----------------CCCSCCCHHHHTT
T ss_pred             HHHHHHHHHhcCCCCCEEeCcCchhhcCcCCC-----CcEEEeeccceeecccCCCc-----cccCCCCcccCCHHHHcC
Confidence            99999999876     9999999999999988     89999999999886543221     125679999999999977


Q ss_pred             CCCCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHH
Q psy4039         425 TPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAEL  501 (588)
Q Consensus       425 ~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e  501 (588)
                      ..      ++.++|||||||++|||++|+.||.+......   +.....+.++..+|+++++||.+||+.||.+|||++|
T Consensus       189 ~~------~~~~~DIwSlGvilyel~tg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~s~~l~~li~~~L~~dp~~Rps~~e  262 (269)
T d2java1         189 MS------YNEKSDIWSLGCLLYELCALMPPFTAFSQKELAGKIREGKFRRIPYRYSDELNEIITRMLNLKDYHRPSVEE  262 (269)
T ss_dssp             CC------CCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             CC------CChHHHHHhhCHHHHHHhhCCCCCCCCCHHHHHHHHHcCCCCCCCcccCHHHHHHHHHHcCCChhHCcCHHH
Confidence            65      45789999999999999999999977432221   1223445667889999999999999999999999999


Q ss_pred             HHHHHhhhhhcCCccc
Q psy4039         502 AATVCQLYLWAPKHWL  517 (588)
Q Consensus       502 ~l~~L~~~~~~~h~w~  517 (588)
                      +++         |||+
T Consensus       263 ll~---------hp~i  269 (269)
T d2java1         263 ILE---------NPLI  269 (269)
T ss_dssp             HHT---------STTC
T ss_pred             HHh---------CCcC
Confidence            999         9996

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-54  Score=447.72  Aligned_cols=265  Identities=20%  Similarity=0.283  Sum_probs=212.2

Q ss_pred             cccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCC
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPP  270 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~  270 (588)
                      +..++|++.+.||+|+||+||+|++.  |+.||||+++.....                .....+.+|+.+|+.+    +
T Consensus         3 l~~d~y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~----------------~~~~~~~~Ei~il~~l----~   62 (322)
T d1s9ja_           3 LKDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKP----------------AIRNQIIRELQVLHEC----N   62 (322)
T ss_dssp             CCGGGEEEEEEEECCSSCCEEEEEETTTTEEEEEEEEECCCCT----------------THHHHHHHHGGGGGGC----C
T ss_pred             CCccCCEEEEEEecCCCeEEEEEEECCCCcEEEEEEEChhhCH----------------HHHHHHHHHHHHHHhC----C
Confidence            44589999999999999999999997  899999999642211                1223566799999987    9


Q ss_pred             CCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4039         271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQL  349 (588)
Q Consensus       271 HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql  349 (588)
                      |||||+++++|.+..                            .+|+||||+ +|+|.+++.+.+ .+++..+..++.|+
T Consensus        63 HpnIv~l~~~~~~~~----------------------------~~~iVmEy~~gg~L~~~l~~~~-~l~~~~~~~~~~qi  113 (322)
T d1s9ja_          63 SPYIVGFYGAFYSDG----------------------------EISICMEHMDGGSLDQVLKKAG-RIPEQILGKVSIAV  113 (322)
T ss_dssp             CTTBCCEEEEEECSS----------------------------EEEEEEECCTTEEHHHHHHHHS-SCCHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEEECC----------------------------EEEEEEEcCCCCcHHHHHhhcC-CCCHHHHHHHHHHH
Confidence            999999999998742                            499999999 579999998765 89999999999999


Q ss_pred             HHHHHHHHh-CCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCC
Q psy4039         350 LEGVTHLNM-HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGL  428 (588)
Q Consensus       350 ~~gL~yLH~-~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~  428 (588)
                      ++||.|||+ +||+||||||+|||++.+     +.+||+|||+|+......       ..+.+||+.|||||++.+..  
T Consensus       114 l~aL~yLH~~~~IiHRDiKP~NILl~~~-----~~vkl~DFGla~~~~~~~-------~~~~~GT~~Y~APEvl~~~~--  179 (322)
T d1s9ja_         114 IKGLTYLREKHKIMHRDVKPSNILVNSR-----GEIKLCDFGVSGQLIDSM-------ANSFVGTRSYMSPERLQGTH--  179 (322)
T ss_dssp             HHHHHHHHHHHCCCCSCCSGGGEEECTT-----CCEEECCCCCCHHHHHHT-------C---CCSSCCCCHHHHHCSC--
T ss_pred             HHHHHHHHHhCCEEccccCHHHeeECCC-----CCEEEeeCCCccccCCCc-------cccccCCccccCchHHcCCC--
Confidence            999999997 599999999999999988     899999999998653311       12568999999999998765  


Q ss_pred             ccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccc----------------------------c---------------
Q psy4039         429 FSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD----------------------------Y---------------  465 (588)
Q Consensus       429 ~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~----------------------------~---------------  465 (588)
                          ++.++||||+||++|||++|+.||.+......                            .               
T Consensus       180 ----y~~~~DiWSlGvil~ell~G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (322)
T d1s9ja_         180 ----YSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLSSYGMDSRPPMAIFELLD  255 (322)
T ss_dssp             ----CCTTHHHHHHHHHHHHHHHSSCCSSCCCTTHHHHHC------------------------------CCCCHHHHHH
T ss_pred             ----CCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhcCCcccCCcccccccccccccccccccchhHHHHHh
Confidence                56789999999999999999999965321100                            0               


Q ss_pred             --cccccCCCC-CCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccCCCCChhHHHHHHHh
Q psy4039         466 --EVNALPQLN-TNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGATPSHNEIMQWLLT  533 (588)
Q Consensus       466 --~~~~~~~~~-~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~~~~~~~~~~~l~~  533 (588)
                        .....+.++ ..++.++++||.+||+.||.+|||++|+++         |||++.......+..+|+.+
T Consensus       256 ~~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~L~---------Hpf~~~~~~~~~d~~~~~~~  317 (322)
T d1s9ja_         256 YIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMV---------HAFIKRSDAEEVDFAGWLCS  317 (322)
T ss_dssp             HHHTSCCCCCCBTTBCHHHHHHHHHHTCSSTTTSCCHHHHHT---------SHHHHHHHHSCCCHHHHHHH
T ss_pred             hhhccCCccCccccCCHHHHHHHHHHcCCChhHCcCHHHHhh---------CHhhCcCCcccccHHHHHHH
Confidence              000011111 246789999999999999999999999999         99998655555555666654

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-53  Score=430.85  Aligned_cols=250  Identities=17%  Similarity=0.253  Sum_probs=202.0

Q ss_pred             eEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceE
Q psy4039         198 IQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVV  275 (588)
Q Consensus       198 ~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV  275 (588)
                      |++.++||+|+||+||+|++.  ++.||||.+.......               ...+.+.+|+++|+.+    +|||||
T Consensus        11 ~~~~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~---------------~~~~~~~~E~~il~~l----~HpnIv   71 (270)
T d1t4ha_          11 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTK---------------SERQRFKEEAEMLKGL----QHPNIV   71 (270)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCH---------------HHHHHHHHHHHHHTTC----CCTTBC
T ss_pred             EEeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCH---------------HHHHHHHHHHHHHHhC----CCCCee
Confidence            477889999999999999997  7799999996432211               1224567899999987    899999


Q ss_pred             EEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy4039         276 VMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVT  354 (588)
Q Consensus       276 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~  354 (588)
                      +++++|.+..                        .....+|+||||+ +|+|.+++.... .+++.++..++.||++||+
T Consensus        72 ~~~~~~~~~~------------------------~~~~~~~ivmE~~~~g~L~~~l~~~~-~~~~~~~~~~~~qi~~gl~  126 (270)
T d1t4ha_          72 RFYDSWESTV------------------------KGKKCIVLVTELMTSGTLKTYLKRFK-VMKIKVLRSWCRQILKGLQ  126 (270)
T ss_dssp             CEEEEEEEES------------------------SSCEEEEEEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEeecc------------------------ccCCEEEEEEeCCCCCcHHHHHhccc-cccHHHHHHHHHHHHHHHH
Confidence            9999997632                        1233589999999 689999998765 8999999999999999999


Q ss_pred             HHHhCC--ceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         355 HLNMHR--TAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       355 yLH~~~--IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |||+++  |+||||||+|||++++.    +.+||+|||+|+......       ....+||+.|||||++.+.       
T Consensus       127 yLH~~~~~IiHrDiKp~NILl~~~~----~~~Kl~DFGla~~~~~~~-------~~~~~GT~~Y~aPE~~~~~-------  188 (270)
T d1t4ha_         127 FLHTRTPPIIHRDLKCDNIFITGPT----GSVKIGDLGLATLKRASF-------AKAVIGTPEFMAPEMYEEK-------  188 (270)
T ss_dssp             HHHTSSSCCCCSCCCGGGEEESSTT----SCEEECCTTGGGGCCTTS-------BEESCSSCCCCCGGGGGTC-------
T ss_pred             HHHHCCCCEEeCCcChhhceeeCCC----CCEEEeecCcceeccCCc-------cCCcccCccccCHHHhCCC-------
Confidence            999998  99999999999997431    689999999997643321       1256799999999998653       


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcccccccc----cc-ccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHh
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD----YE-VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~----~~-~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~  507 (588)
                      ++.++|||||||++|||++|+.||.+......    .. ....+.++..+++++++||.+||+.||++|||++|+++   
T Consensus       189 ~~~~~DIwSlGvilyel~~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~s~~ell~---  265 (270)
T d1t4ha_         189 YDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN---  265 (270)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTCCCGGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT---
T ss_pred             CCCcCchhhHHHHHHHHHHCCCCCCCcccHHHHHHHHHcCCCCcccCccCCHHHHHHHHHHccCCHhHCcCHHHHhC---
Confidence            45789999999999999999999975322111    11 11222345668899999999999999999999999999   


Q ss_pred             hhhhcCCcccc
Q psy4039         508 LYLWAPKHWLY  518 (588)
Q Consensus       508 ~~~~~~h~w~~  518 (588)
                            ||||+
T Consensus       266 ------Hp~fk  270 (270)
T d1t4ha_         266 ------HAFFQ  270 (270)
T ss_dssp             ------SGGGC
T ss_pred             ------CcccC
Confidence                  99985

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.8e-54  Score=437.43  Aligned_cols=262  Identities=23%  Similarity=0.333  Sum_probs=210.0

Q ss_pred             ccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCC
Q psy4039         194 KVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPH  271 (588)
Q Consensus       194 ~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~H  271 (588)
                      ..++|++++.||+|+||+||+|.++  ++.||||++.+..           ...   ....+.+.+|+.+|+.+    +|
T Consensus         6 ~p~dy~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~-----------~~~---~~~~~~~~~E~~il~~l----~H   67 (288)
T d1uu3a_           6 RPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRH-----------IIK---ENKVPYVTRERDVMSRL----DH   67 (288)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHH-----------HHH---TTCHHHHHHHHHHHHHC----CS
T ss_pred             CCCCCEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHH-----------ccC---HHHHHHHHHHHHHHHHc----CC
Confidence            3478999999999999999999997  8899999995311           111   11334577899999998    99


Q ss_pred             CceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy4039         272 PNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLL  350 (588)
Q Consensus       272 pNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~  350 (588)
                      ||||+++++|.+..                            .+|+||||| +|+|.+++...+ .+++..++.++.|++
T Consensus        68 pnIv~l~~~~~~~~----------------------------~~~ivmEy~~gg~L~~~~~~~~-~l~e~~~~~~~~qi~  118 (288)
T d1uu3a_          68 PFFVKLYFTFQDDE----------------------------KLYFGLSYAKNGELLKYIRKIG-SFDETCTRFYTAEIV  118 (288)
T ss_dssp             TTBCCEEEEEECSS----------------------------EEEEEECCCTTEEHHHHHHHHS-SCCHHHHHHHHHHHH
T ss_pred             CCeeEEEEEEEECC----------------------------EEEEEEEccCCCCHHHhhhccC-CCCHHHHHHHHHHHH
Confidence            99999999998732                            499999999 579999998765 899999999999999


Q ss_pred             HHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCcc
Q psy4039         351 EGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFS  430 (588)
Q Consensus       351 ~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~  430 (588)
                      .||+|||++||+||||||+|||++++     +.+||+|||+|+.........   .....+||+.|||||++.+..    
T Consensus       119 ~al~ylH~~~iiHrDiKp~NIll~~~-----~~vkl~DFG~a~~~~~~~~~~---~~~~~~GT~~Y~APE~~~~~~----  186 (288)
T d1uu3a_         119 SALEYLHGKGIIHRDLKPENILLNED-----MHIQITDFGTAKVLSPESKQA---RANSFVGTAQYVSPELLTEKS----  186 (288)
T ss_dssp             HHHHHHHHTTEECSCCSGGGEEECTT-----SCEEECCCTTCEECC-------------CCCCGGGCCHHHHHTCC----
T ss_pred             HHHHhhccccEEcCcCCccccccCCC-----ceEEecccccceecccCCccc---ccccccCCccccCceeeccCC----
Confidence            99999999999999999999999988     899999999998765432211   112467999999999998775    


Q ss_pred             CCCCCcCchhhHHHHHHHHhcCCCCCcccccccccc--ccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhh
Q psy4039         431 FVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQL  508 (588)
Q Consensus       431 ~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~--~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~  508 (588)
                        ++.++||||+||++|||++|+.||.+......+.  ....+.++..+++++++||.+||+.||.+|||++|+++....
T Consensus       187 --~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~~dP~~R~t~~e~~~~~~i  264 (288)
T d1uu3a_         187 --ACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPL  264 (288)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHTTCCCCCTTCCHHHHHHHHTTSCSSGGGSTTSGGGTCHHHH
T ss_pred             --CCcccceehhhHHHHHHhhCCCCCCCcCHHHHHHHHHcCCCCCCccCCHHHHHHHHHHccCCHhHCcCHHHHcCCHHH
Confidence              4578999999999999999999998753322221  122345677899999999999999999999999986543221


Q ss_pred             hhhcCCccccC
Q psy4039         509 YLWAPKHWLYG  519 (588)
Q Consensus       509 ~~~~~h~w~~~  519 (588)
                         ..||||+.
T Consensus       265 ---~~Hpff~~  272 (288)
T d1uu3a_         265 ---KAHPFFES  272 (288)
T ss_dssp             ---HTSGGGTT
T ss_pred             ---HcCCccCC
Confidence               12999864

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-53  Score=433.67  Aligned_cols=256  Identities=21%  Similarity=0.215  Sum_probs=208.3

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      +.|++.+.||+|+||+||+|.+.  +..||||++.....                 ...+.+.+|+.+|+.+    +|||
T Consensus        12 d~Y~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~-----------------~~~~~~~~E~~il~~l----~Hpn   70 (288)
T d2jfla1          12 DFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSE-----------------EELEDYMVEIDILASC----DHPN   70 (288)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSSS-----------------GGGGGTHHHHHHHHHC----CCTT
T ss_pred             cCeEEeEEEeeCCCcEEEEEEECCCCeEEEEEEECcCCH-----------------HHHHHHHHHHHHHHhC----CCCC
Confidence            56999999999999999999997  78999999964221                 1234577899999998    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      ||++++++.+..                            .+|+||||| +|+|.+++......+++.++..++.||++|
T Consensus        71 Iv~l~~~~~~~~----------------------------~~~lvmEy~~~g~L~~~~~~~~~~l~e~~~~~i~~qi~~g  122 (288)
T d2jfla1          71 IVKLLDAFYYEN----------------------------NLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDA  122 (288)
T ss_dssp             BCCEEEEEEETT----------------------------EEEEEEECCTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEeeCC----------------------------eEEEEEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence            999999998742                            499999999 689999988766579999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||++||+||||||+|||++.+     +.+||+|||+|+.......     .....+||+.|||||++...... ...
T Consensus       123 L~ylH~~~ivHrDiKp~NIll~~~-----~~~Kl~DFG~a~~~~~~~~-----~~~~~~Gt~~y~APE~l~~~~~~-~~~  191 (288)
T d2jfla1         123 LNYLHDNKIIHRDLKAGNILFTLD-----GDIKLADFGVSAKNTRTIQ-----RRDSFIGTPYWMAPEVVMCETSK-DRP  191 (288)
T ss_dssp             HHHHHHTTEECCCCSGGGEEECTT-----SCEEECCCTTCEECHHHHH-----HHTCCCSCCTTCCHHHHTTCSTT-TSS
T ss_pred             HHHHHHCCEEEeecChhheeECCC-----CCEEEEechhhhccCCCcc-----cccccccccccCCHHHHhhcccC-CCC
Confidence            999999999999999999999988     8999999999976432111     11246799999999999643321 112


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcccccccccc---ccc--cCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHh
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE---VNA--LPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~---~~~--~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~  507 (588)
                      ++.++|||||||++|||++|+.||.+........   ...  ....+..+|+++++||.+||+.||++|||++|+++   
T Consensus       192 y~~k~DiwSlGvilyemltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~ell~---  268 (288)
T d2jfla1         192 YDYKADVWSLGITLIEMAEIEPPHHELNPMRVLLKIAKSEPPTLAQPSRWSSNFKDFLKKCLEKNVDARWTTSQLLQ---  268 (288)
T ss_dssp             TTTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHHHHHHHSCCCCCSSGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT---
T ss_pred             CChhhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHccCChhHCcCHHHHhc---
Confidence            4578999999999999999999997743322211   111  12234578999999999999999999999999988   


Q ss_pred             hhhhcCCccccCC
Q psy4039         508 LYLWAPKHWLYGA  520 (588)
Q Consensus       508 ~~~~~~h~w~~~~  520 (588)
                            |||++..
T Consensus       269 ------hp~~~~~  275 (288)
T d2jfla1         269 ------HPFVTVD  275 (288)
T ss_dssp             ------SGGGCCC
T ss_pred             ------CcccCCC
Confidence                  9999743

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.3e-53  Score=435.73  Aligned_cols=255  Identities=23%  Similarity=0.366  Sum_probs=195.1

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      +.|++.+.||+|+||+||+|.++  ++.||||++.......                ....+.+|+.+|+.+    +|||
T Consensus         9 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~----------------~~~~~~~Ei~il~~l----~Hpn   68 (307)
T d1a06a_           9 DIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEG----------------KEGSMENEIAVLHKI----KHPN   68 (307)
T ss_dssp             GTEEEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC--------------------------CHHHHHHHTC----CCTT
T ss_pred             cceEEEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhh----------------HHHHHHHHHHHHHhC----CCCC
Confidence            67999999999999999999997  8899999996432111                224467899999987    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      ||++++++.+..                            .+|+||||| +|+|.++|..++ .+++.++..++.||+.|
T Consensus        69 Iv~l~~~~~~~~----------------------------~~~lvmE~~~gg~L~~~l~~~~-~l~e~~~~~~~~qi~~a  119 (307)
T d1a06a_          69 IVALDDIYESGG----------------------------HLYLIMQLVSGGELFDRIVEKG-FYTERDASRLIFQVLDA  119 (307)
T ss_dssp             BCCEEEEEECSS----------------------------EEEEEECCCCSCBHHHHHHTCS-CCCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEEECC----------------------------EEEEEEeccCCCcHHHhhhccc-CCCHHHHHHHHHHHHHH
Confidence            999999998732                            599999999 589999998754 89999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||++||+||||||+|||+.....+  +.+||+|||+|+....+..      ....+||+.|||||++.+..      
T Consensus       120 l~ylH~~~iiHrDiKp~Nil~~~~~~~--~~vkl~DFG~a~~~~~~~~------~~~~~GT~~y~APE~~~~~~------  185 (307)
T d1a06a_         120 VKYLHDLGIVHRDLKPENLLYYSLDED--SKIMISDFGLSKMEDPGSV------LSTACGTPGYVAPEVLAQKP------  185 (307)
T ss_dssp             HHHHHHTTCCCSCCCGGGEEESSSSTT--CCEEECCC------------------------CTTSCHHHHTTCC------
T ss_pred             HHhhhhceeeeEEecccceeecccCCC--ceEEEeccceeEEccCCCe------eeeeeeCccccCcHHHcCCC------
Confidence            999999999999999999999653111  6899999999987654321      12467999999999998765      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcccccccccc------ccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHH
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE------VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVC  506 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~------~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L  506 (588)
                      ++.++|||||||++|||++|++||.+........      .....+.+..+|+++++||.+||+.||++|||++|+++  
T Consensus       186 ~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~--  263 (307)
T d1a06a_         186 YSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILKAEYEFDSPYWDDISDSAKDFIRHLMEKDPEKRFTCEQALQ--  263 (307)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHTTCCCCCTTTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH--
T ss_pred             CCcHHHhhhhhHHHHHHHhCCCCCCCCCHHHHHHHHhccCCCCCCccccCCCHHHHHHHHHHccCCHhHCcCHHHHhc--
Confidence            5578999999999999999999998743221111      11222345678999999999999999999999999999  


Q ss_pred             hhhhhcCCccccCCCC
Q psy4039         507 QLYLWAPKHWLYGATP  522 (588)
Q Consensus       507 ~~~~~~~h~w~~~~~~  522 (588)
                             |||++....
T Consensus       264 -------hp~~~~~~~  272 (307)
T d1a06a_         264 -------HPWIAGDTA  272 (307)
T ss_dssp             -------STTTTSSCC
T ss_pred             -------CHhhCCCCc
Confidence                   999985433

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.9e-53  Score=434.65  Aligned_cols=262  Identities=20%  Similarity=0.297  Sum_probs=200.7

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEEC--C---eeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhh
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATFR--G---VEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSV  265 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g---~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l  265 (588)
                      .++..++|++.+.||+|+||+||+|.++  +   ..||||.+.....   .             ...+.+.+|+.+|+.+
T Consensus        21 ~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~---~-------------~~~~~~~~E~~~l~~l   84 (299)
T d1jpaa_          21 KEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYT---E-------------KQRRDFLSEASIMGQF   84 (299)
T ss_dssp             CBCCGGGEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCC---H-------------HHHHHHHHHHHHHTTC
T ss_pred             hhhChhhcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccC---H-------------HHHHHHHHHHHHHHhC
Confidence            4566689999999999999999999986  2   3689998843211   1             0223567899999987


Q ss_pred             cCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHH
Q psy4039         266 ENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVL  344 (588)
Q Consensus       266 ~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~  344 (588)
                          +|||||+++++|.+..                            .+++||||| +|+|.+++......+++.++..
T Consensus        85 ----~HpnIv~l~g~~~~~~----------------------------~~~iv~Ey~~~g~L~~~~~~~~~~l~~~~~~~  132 (299)
T d1jpaa_          85 ----DHPNVIHLEGVVTKST----------------------------PVMIITEFMENGSLDSFLRQNDGQFTVIQLVG  132 (299)
T ss_dssp             ----CCTTBCCEEEEECSSS----------------------------SCEEEEECCTTEEHHHHHHTTTTCSCHHHHHH
T ss_pred             ----CCCCCccEEEEEeeCC----------------------------EEEEEEEecCCCcceeeeccccCCCCHHHHHH
Confidence                9999999999997632                            389999999 6899999987666899999999


Q ss_pred             HHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhc
Q psy4039         345 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALA  424 (588)
Q Consensus       345 i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~  424 (588)
                      ++.||++||.|||+++|+||||||+|||++.+     +.+||+|||+|+..................||+.|||||++.+
T Consensus       133 i~~qia~gl~yLH~~~iiHrDlKp~NILl~~~-----~~~Kl~DFGla~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~  207 (299)
T d1jpaa_         133 MLRGIAAGMKYLADMNYVHRDLAARNILVNSN-----LVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQY  207 (299)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCCGGGEEECTT-----CCEEECCC-----------------------CGGGSCHHHHHS
T ss_pred             HHHHHHHHHHHHhhCCCccCccccceEEECCC-----CcEEECCcccceEccCCCCcceeeecccccCCccccCHHHHhc
Confidence            99999999999999999999999999999988     8999999999987655333222222234568999999999987


Q ss_pred             CCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHH
Q psy4039         425 TPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE  500 (588)
Q Consensus       425 ~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~  500 (588)
                      ..      ++.++|||||||++|||+| |+.||.+......   ......++.+..+|+++.+||.+||+.||++|||++
T Consensus       208 ~~------~~~~sDvwS~Gvvl~el~t~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPs~~  281 (299)
T d1jpaa_         208 RK------FTSASDVWSYGIVMWEVMSYGERPYWDMTNQDVINAIEQDYRLPPPMDCPSALHQLMLDCWQKDRNHRPKFG  281 (299)
T ss_dssp             CC------CCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHH
T ss_pred             CC------CCcccccccchHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCccchHHHHHHHHHHcCCCHhHCcCHH
Confidence            65      5578999999999999998 8999976432221   122344556778999999999999999999999999


Q ss_pred             HHHHHHhhhhh
Q psy4039         501 LAATVCQLYLW  511 (588)
Q Consensus       501 e~l~~L~~~~~  511 (588)
                      ++++.|+.++-
T Consensus       282 ei~~~L~~~l~  292 (299)
T d1jpaa_         282 QIVNTLDKMIR  292 (299)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            99998876654

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.7e-53  Score=425.75  Aligned_cols=259  Identities=22%  Similarity=0.272  Sum_probs=211.8

Q ss_pred             CCCccccccCCeEEeeeecccCceeEEEEEEC-CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhh
Q psy4039         187 LPDVDDVKVDDIQIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSV  265 (588)
Q Consensus       187 ~~~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l  265 (588)
                      ..+.|++..++|++.+.||+|+||+||+|.++ +..||||+++....                  ..+.+.+|+.+|+++
T Consensus         4 ~~~~wei~~~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~~~------------------~~~~~~~E~~~l~~l   65 (272)
T d1qpca_           4 WEDEWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSM------------------SPDAFLAEANLMKQL   65 (272)
T ss_dssp             TTCTTBCCGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSS------------------CHHHHHHHHHHHHHC
T ss_pred             CCCCeecCHHHeEEeEEEecCCCcEEEEEEECCCCEEEEEEEccCcC------------------CHHHHHHHHHHHHhC
Confidence            35678888899999999999999999999997 57899999953211                  234577899999998


Q ss_pred             cCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh-cCCCCHHHHH
Q psy4039         266 ENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER-CAQLSMHERV  343 (588)
Q Consensus       266 ~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~-~~~l~~~~~~  343 (588)
                          +|||||++++++.+.                             .+++||||+ +|+|.+++... ...+++.++.
T Consensus        66 ----~HpnIv~~~g~~~~~-----------------------------~~~iv~Ey~~~g~L~~~~~~~~~~~l~~~~~~  112 (272)
T d1qpca_          66 ----QHQRLVRLYAVVTQE-----------------------------PIYIITEYMENGSLVDFLKTPSGIKLTINKLL  112 (272)
T ss_dssp             ----CCTTBCCEEEEECSS-----------------------------SCEEEEECCTTCBHHHHTTSHHHHTCCHHHHH
T ss_pred             ----CCCCEeEEEeeeccC-----------------------------CeEEEEEeCCCCcHHHHHhhcCCCCCCHHHHH
Confidence                999999999987652                             278999999 68999987643 3369999999


Q ss_pred             HHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHh
Q psy4039         344 LLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVAL  423 (588)
Q Consensus       344 ~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~  423 (588)
                      .|+.||++||.|||+++|+||||||+|||++.+     +.+||+|||+|+.........    .....||+.|||||++.
T Consensus       113 ~i~~qi~~gl~~lH~~~ivHrDiKp~NIll~~~-----~~~Kl~DFGla~~~~~~~~~~----~~~~~gt~~y~APE~~~  183 (272)
T d1qpca_         113 DMAAQIAEGMAFIEERNYIHRDLRAANILVSDT-----LSCKIADFGLARLIEDNEYTA----REGAKFPIKWTAPEAIN  183 (272)
T ss_dssp             HHHHHHHHHHHHHHHTTEECSCCSGGGEEECTT-----SCEEECCCTTCEECSSSCEEC----CTTCCCCTTTSCHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCcccCccchhheeeecc-----cceeeccccceEEccCCcccc----ccccCCcccccChHHHh
Confidence            999999999999999999999999999999988     899999999999875532211    12457999999999998


Q ss_pred             cCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccc----ccccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCH
Q psy4039         424 ATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARN----TDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSA  499 (588)
Q Consensus       424 ~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~----~~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~  499 (588)
                      +..      ++.++|||||||++|||+||..|+......    ........+..+..+|+++.+|+.+||+.||++|||+
T Consensus       184 ~~~------~~~~sDvwS~Gvvl~ellt~~~~~~~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~~P~~Rpt~  257 (272)
T d1qpca_         184 YGT------FTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTF  257 (272)
T ss_dssp             HCE------ECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             CCC------CCchhhhhhhHHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCCCcccChHHHHHHHHHHcCCCHhHCcCH
Confidence            765      457899999999999999965554432111    1122234556678899999999999999999999999


Q ss_pred             HHHHHHHhhhhh
Q psy4039         500 ELAATVCQLYLW  511 (588)
Q Consensus       500 ~e~l~~L~~~~~  511 (588)
                      +++++.|+.++.
T Consensus       258 ~ei~~~L~~~ft  269 (272)
T d1qpca_         258 DYLRSVLEDFFT  269 (272)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhh
Confidence            999998886543

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-52  Score=436.28  Aligned_cols=255  Identities=22%  Similarity=0.316  Sum_probs=213.2

Q ss_pred             cccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCC
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPP  270 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~  270 (588)
                      +++++|++++.||+|+||.||+|+++  |+.||||++++..           ...   ....+.+.+|+.+|+.+    +
T Consensus         2 i~l~dy~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~-----------~~~---~~~~~~~~~E~~il~~l----~   63 (337)
T d1o6la_           2 VTMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEV-----------IIA---KDEVAHTVTESRVLQNT----R   63 (337)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHH-----------HHH---TTCHHHHHHHHHHHHSC----C
T ss_pred             CchHhcEEEEEEecCcCeEEEEEEECCCCCEEEEEEEchhh-----------ccC---HHHHHHHHHHHHHHHhC----C
Confidence            56799999999999999999999987  8999999995311           111   11234567899999987    8


Q ss_pred             CCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHH
Q psy4039         271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQL  349 (588)
Q Consensus       271 HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql  349 (588)
                      |||||+++++|.+..                            .+|+||||| +|+|.+++...+ .+++..++.++.||
T Consensus        64 hp~Iv~l~~~~~~~~----------------------------~~~iv~ey~~gg~L~~~~~~~~-~~~e~~~~~~~~qi  114 (337)
T d1o6la_          64 HPFLTALKYAFQTHD----------------------------RLCFVMEYANGGELFFHLSRER-VFTEERARFYGAEI  114 (337)
T ss_dssp             CTTBCCEEEEEECSS----------------------------EEEEEEECCTTCBHHHHHHHHS-CCCHHHHHHHHHHH
T ss_pred             CCCEEEEEeeecccc----------------------------ccccceeccCCCchhhhhhccc-CCcHHHHHHHHHHH
Confidence            999999999998742                            599999999 689999998775 89999999999999


Q ss_pred             HHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCc
Q psy4039         350 LEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF  429 (588)
Q Consensus       350 ~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~  429 (588)
                      +.||+|||++||+||||||+|||++.+     +.+||+|||+|+.......     .....+||+.|||||++.+..   
T Consensus       115 l~al~ylH~~~iiHRDlKP~NILl~~~-----g~vkl~DFG~a~~~~~~~~-----~~~~~~GT~~Y~aPE~~~~~~---  181 (337)
T d1o6la_         115 VSALEYLHSRDVVYRDIKLENLMLDKD-----GHIKITDFGLCKEGISDGA-----TMKTFCGTPEYLAPEVLEDND---  181 (337)
T ss_dssp             HHHHHHHHHTTCBCCCCCGGGEEECTT-----SCEEECCCTTCBCSCCTTC-----CBCCCEECGGGCCGGGGSSSC---
T ss_pred             hhhhhhhhhcCccccccCHHHeEecCC-----CCEEEeecccccccccCCc-----ccccceeCHHHhhhhhccCCC---
Confidence            999999999999999999999999988     8999999999987543221     122578999999999998765   


Q ss_pred             cCCCCCcCchhhHHHHHHHHhcCCCCCcccccccccc--ccccCCCCCCccHHHHHHHHHhhhhCCCCCCC-----HHHH
Q psy4039         430 SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVAKLLENDPSDRPS-----AELA  502 (588)
Q Consensus       430 ~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~--~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps-----~~e~  502 (588)
                         ++.++||||+||++|||++|++||.+......+.  ....+.+|..+|+++++||.+||++||.+||+     ++++
T Consensus       182 ---y~~~~DiwSlGvilyeml~G~~pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~dli~~~L~~dP~~R~~~~~~~~~ei  258 (337)
T d1o6la_         182 ---YGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEV  258 (337)
T ss_dssp             ---BCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHH
T ss_pred             ---CChhhcccchhhHHHHHHHCCCCCCCcCHHHHHHHHhcCCCCCCccCCHHHHHHHHhhccCCchhhcccccccHHHH
Confidence               5578999999999999999999998754332221  12334677889999999999999999999995     8898


Q ss_pred             HHHHhhhhhcCCccccC
Q psy4039         503 ATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       503 l~~L~~~~~~~h~w~~~  519 (588)
                      ++         |||++.
T Consensus       259 l~---------Hp~f~~  266 (337)
T d1o6la_         259 ME---------HRFFLS  266 (337)
T ss_dssp             HT---------SGGGTT
T ss_pred             Hc---------Cccccc
Confidence            88         999964

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.6e-52  Score=430.86  Aligned_cols=255  Identities=23%  Similarity=0.268  Sum_probs=205.0

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      +.|+..+.||+|+||+||+|++.  ++.||||++.........              ..+.+.+|+.+|+.+    +|||
T Consensus        15 ~~y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~--------------~~~~~~~Ei~il~~l----~Hpn   76 (309)
T d1u5ra_          15 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNE--------------KWQDIIKEVRFLQKL----RHPN   76 (309)
T ss_dssp             HHEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHH--------------HHHHHHHHHHHHTTC----CCTT
T ss_pred             HhcEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHH--------------HHHHHHHHHHHHHHC----CCCC
Confidence            45999999999999999999987  889999999653322111              123466799999987    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCC-CcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYN-TDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~-gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      ||+++++|.+..                            .+|+|||||. |+|..++..+ ..+++.+++.++.||+.|
T Consensus        77 Iv~~~~~~~~~~----------------------------~~~iv~E~~~~g~l~~~~~~~-~~l~e~~~~~i~~qi~~a  127 (309)
T d1u5ra_          77 TIQYRGCYLREH----------------------------TAWLVMEYCLGSASDLLEVHK-KPLQEVEIAAVTHGALQG  127 (309)
T ss_dssp             BCCEEEEEEETT----------------------------EEEEEEECCSEEHHHHHHHHT-SCCCHHHHHHHHHHHHHH
T ss_pred             EeeEEEEEEECC----------------------------EEEEEEEecCCCchHHHHHhC-CCCCHHHHHHHHHHHHHH
Confidence            999999998732                            4999999995 6676555544 489999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||++||+||||||+|||++.+     +.+||+|||+|+.....         ...+||+.|||||++.+....   .
T Consensus       128 L~yLH~~~iiHrDiKp~NILl~~~-----~~~Kl~DFG~a~~~~~~---------~~~~GT~~Y~APE~~~~~~~~---~  190 (309)
T d1u5ra_         128 LAYLHSHNMIHRDVKAGNILLSEP-----GLVKLGDFGSASIMAPA---------NSFVGTPYWMAPEVILAMDEG---Q  190 (309)
T ss_dssp             HHHHHHTTCBCCCCSGGGEEEETT-----TEEEECCCTTCBSSSSB---------CCCCSCGGGCCHHHHTTTTSC---C
T ss_pred             HHHHHhCCEeccCCCcceEEECCC-----CCEEEeecccccccCCC---------CccccCccccCHHHHhccCCC---C
Confidence            999999999999999999999988     89999999999764331         145799999999999754211   1


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcccccccccc---cccc-CCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhh
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE---VNAL-PQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQL  508 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~---~~~~-~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~  508 (588)
                      ++.++|||||||++|||++|..||.+........   .... ...+..+|+++++||.+||+.||.+|||++|+++    
T Consensus       191 y~~~~DiwSlGvilyel~~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~----  266 (309)
T d1u5ra_         191 YDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLK----  266 (309)
T ss_dssp             BCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHTT----
T ss_pred             cCchhhhhhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHCcCChhHCcCHHHHHh----
Confidence            4578999999999999999999997643222111   1112 2234568999999999999999999999999988    


Q ss_pred             hhhcCCccccCCCCC
Q psy4039         509 YLWAPKHWLYGATPS  523 (588)
Q Consensus       509 ~~~~~h~w~~~~~~~  523 (588)
                           |||+....+.
T Consensus       267 -----Hp~~~~~~~~  276 (309)
T d1u5ra_         267 -----HRFVLRERPP  276 (309)
T ss_dssp             -----CHHHHSCCCT
T ss_pred             -----CHHhcCCCCc
Confidence                 9999855443

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-52  Score=424.52  Aligned_cols=258  Identities=23%  Similarity=0.389  Sum_probs=211.4

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      +.|++++.||+|+||+||+|+++  |+.||||++.+.......           .....+.+.+|+.+|+.+    +|||
T Consensus        10 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~-----------~~~~~~~~~~E~~il~~l----~Hpn   74 (293)
T d1jksa_          10 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSR-----------RGVSREDIEREVSILKEI----QHPN   74 (293)
T ss_dssp             GTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCS-----------SSBCHHHHHHHHHHHHHC----CCTT
T ss_pred             cCEEEeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhh-----------hhHHHHHHHHHHHHHHhC----CCCC
Confidence            67999999999999999999997  889999999754332211           111345677899999998    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      ||+++++|.+..                            .+|+||||| +|+|.+++...+ .+++.+++.++.|++.|
T Consensus        75 Iv~~~~~~~~~~----------------------------~~~iv~E~~~gg~L~~~i~~~~-~l~~~~~~~~~~qi~~a  125 (293)
T d1jksa_          75 VITLHEVYENKT----------------------------DVILILELVAGGELFDFLAEKE-SLTEEEATEFLKQILNG  125 (293)
T ss_dssp             BCCEEEEEECSS----------------------------EEEEEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEEECC----------------------------EEEEEEEcCCCccccchhcccc-ccchhHHHHHHHHHHHH
Confidence            999999998742                            599999999 589999998765 89999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||+++|+||||||+|||++.++... ..+||+|||+|+....+...      ....||+.|||||++.+..      
T Consensus       126 l~yLH~~~ivHrDiKp~Nill~~~~~~~-~~vkl~DfG~a~~~~~~~~~------~~~~~t~~y~APE~~~~~~------  192 (293)
T d1jksa_         126 VYYLHSLQIAHFDLKPENIMLLDRNVPK-PRIKIIDFGLAHKIDFGNEF------KNIFGTPEFVAPEIVNYEP------  192 (293)
T ss_dssp             HHHHHHTTEECCCCSGGGEEESCSSSSS-CCEEECCCTTCEECTTSCBC------SCCCCCGGGCCHHHHTTCC------
T ss_pred             HHhhhhcceeecccccceEEEecCCCcc-cceEecchhhhhhcCCCccc------cccCCCCcccCHHHHcCCC------
Confidence            9999999999999999999998774322 47999999999876543221      2467999999999998764      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCccccccccccc------cccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHH
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV------NALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVC  506 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~------~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L  506 (588)
                      ++.++|||||||++|||++|+.||.+......+..      ...+..+..+|+++++||.+||+.||++|||++|+++  
T Consensus       193 ~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~--  270 (293)
T d1jksa_         193 LGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQ--  270 (293)
T ss_dssp             BCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHTTCCCCCHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH--
T ss_pred             CCCcccchhhhHHHHHHHcCCCCCCCCCHHHHHHHHHhcCCCCCchhcCCCCHHHHHHHHHHccCChhHCcCHHHHhc--
Confidence            45789999999999999999999987533222111      1111223578999999999999999999999999999  


Q ss_pred             hhhhhcCCccccC
Q psy4039         507 QLYLWAPKHWLYG  519 (588)
Q Consensus       507 ~~~~~~~h~w~~~  519 (588)
                             |||++.
T Consensus       271 -------hp~~~~  276 (293)
T d1jksa_         271 -------HPWIKP  276 (293)
T ss_dssp             -------STTTCC
T ss_pred             -------CcccCC
Confidence                   999974

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.7e-52  Score=424.97  Aligned_cols=255  Identities=23%  Similarity=0.262  Sum_probs=211.5

Q ss_pred             CccccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhc
Q psy4039         189 DVDDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVE  266 (588)
Q Consensus       189 ~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~  266 (588)
                      +.|+++.++|++.+.||+|+||+||+|+++  ++.||||+++...                  ...+.+.+|+.+|+.+ 
T Consensus        10 ~~wei~~~~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~------------------~~~~~~~~E~~il~~l-   70 (287)
T d1opja_          10 DKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT------------------MEVEEFLKEAAVMKEI-   70 (287)
T ss_dssp             CTTBCCGGGEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTTC------------------SCHHHHHHHHHHHHHC-
T ss_pred             cccEecHHHeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCcc------------------chHHHHHHHHHHHHhC-
Confidence            568899999999999999999999999997  8899999985321                  1234567899999998 


Q ss_pred             CCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh-cCCCCHHHHHH
Q psy4039         267 NLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER-CAQLSMHERVL  344 (588)
Q Consensus       267 ~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~-~~~l~~~~~~~  344 (588)
                         +|||||+++++|.+..                            .+++||||| +|+|.+++... ...+++..+..
T Consensus        71 ---~HpnIv~~~~~~~~~~----------------------------~~~iv~E~~~~g~l~~~l~~~~~~~~~~~~~~~  119 (287)
T d1opja_          71 ---KHPNLVQLLGVCTREP----------------------------PFYIITEFMTYGNLLDYLRECNRQEVSAVVLLY  119 (287)
T ss_dssp             ---CCTTBCCEEEEECSSS----------------------------SCEEEEECCTTCBHHHHHHHSCTTTSCHHHHHH
T ss_pred             ---CCCCEecCCccEeeCC----------------------------eeEEEeecccCcchHHHhhhccccchHHHHHHH
Confidence               9999999999997632                            389999999 68999999864 34799999999


Q ss_pred             HHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhc
Q psy4039         345 LFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALA  424 (588)
Q Consensus       345 i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~  424 (588)
                      |+.||++||.|||++||+||||||+|||++.+     +.+||+|||+|+.........    .....||+.|||||++.+
T Consensus       120 i~~qi~~gL~yLH~~~iiHrDlKp~NILl~~~-----~~~Kl~DFG~a~~~~~~~~~~----~~~~~g~~~y~aPE~~~~  190 (287)
T d1opja_         120 MATQISSAMEYLEKKNFIHRDLAARNCLVGEN-----HLVKVADFGLSRLMTGDTYTA----HAGAKFPIKWTAPESLAY  190 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCSGGGEEECGG-----GCEEECCCCCTTTCCSSSSEE----ETTEEECGGGCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCcccCccccCeEEECCC-----CcEEEccccceeecCCCCcee----eccccccccccChHHHcC
Confidence            99999999999999999999999999999988     899999999998765432211    123468999999999987


Q ss_pred             CCCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccc----cccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHH
Q psy4039         425 TPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNT----DYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE  500 (588)
Q Consensus       425 ~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~----~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~  500 (588)
                      ..      ++.++|||||||++|||++|..||.......    .......++.+..+|+++++||.+||+.||++|||++
T Consensus       191 ~~------~~~k~DiwS~Gv~l~ell~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~  264 (287)
T d1opja_         191 NK------FSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFA  264 (287)
T ss_dssp             CC------CSHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             CC------CCchhhhhhHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCCCCCCCccchHHHHHHHHHHcCCCHhHCcCHH
Confidence            75      4578999999999999999777665432211    1222345567788999999999999999999999999


Q ss_pred             HHHHHHhh
Q psy4039         501 LAATVCQL  508 (588)
Q Consensus       501 e~l~~L~~  508 (588)
                      ++++.|+.
T Consensus       265 ei~~~L~~  272 (287)
T d1opja_         265 EIHQAFET  272 (287)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99886653

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3e-52  Score=430.29  Aligned_cols=252  Identities=26%  Similarity=0.368  Sum_probs=210.3

Q ss_pred             ccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCC
Q psy4039         194 KVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPH  271 (588)
Q Consensus       194 ~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~H  271 (588)
                      ++++|++++.||+|+||+||+|+++  |+.||||++.+..           ...   ....+.+.+|+.+|+.+    +|
T Consensus         2 sl~dy~i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~-----------~~~---~~~~~~~~~E~~il~~l----~H   63 (316)
T d1fota_           2 SLQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEI-----------VVR---LKQVEHTNDERLMLSIV----TH   63 (316)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHH-----------HHH---TTCHHHHHHHHHHHHSC----CB
T ss_pred             chhHeEEEEEEecCcCcEEEEEEECCCCCEEEEEEEchHH-----------ccC---HHHHHHHHHHHHHHHhc----cC
Confidence            4689999999999999999999987  8999999995311           011   11334577899999987    99


Q ss_pred             CceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy4039         272 PNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLL  350 (588)
Q Consensus       272 pNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~  350 (588)
                      ||||++++++.+..                            .+|+||||| +|+|..++.... .+++..+..++.||+
T Consensus        64 pnIv~~~~~~~~~~----------------------------~~~ivmE~~~gg~l~~~~~~~~-~~~~~~~~~~~~qi~  114 (316)
T d1fota_          64 PFIIRMWGTFQDAQ----------------------------QIFMIMDYIEGGELFSLLRKSQ-RFPNPVAKFYAAEVC  114 (316)
T ss_dssp             TTBCCEEEEEECSS----------------------------EEEEEECCCCSCBHHHHHHHTS-SCCHHHHHHHHHHHH
T ss_pred             cChhheeeeEeeCC----------------------------eeeeEeeecCCccccccccccc-cccccHHHHHHHHHH
Confidence            99999999998732                            599999999 678998887764 889999999999999


Q ss_pred             HHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCcc
Q psy4039         351 EGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFS  430 (588)
Q Consensus       351 ~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~  430 (588)
                      .||.|||++||+||||||+|||++.+     +.+||+|||+|+......        ...+||+.|||||++.+..    
T Consensus       115 ~al~~lH~~~iiHrDiKp~NILl~~~-----g~vkL~DFG~a~~~~~~~--------~~~~Gt~~Y~APE~l~~~~----  177 (316)
T d1fota_         115 LALEYLHSKDIIYRDLKPENILLDKN-----GHIKITDFGFAKYVPDVT--------YTLCGTPDYIAPEVVSTKP----  177 (316)
T ss_dssp             HHHHHHHTTTEECCCCCGGGEEECTT-----SCEEECCCSSCEECSSCB--------CCCCSCTTTCCHHHHTTCC----
T ss_pred             HhhhhhccCcEEccccCchheeEcCC-----CCEEEecCccceEecccc--------ccccCcccccCHHHHcCCC----
Confidence            99999999999999999999999987     899999999998765421        2468999999999998765    


Q ss_pred             CCCCCcCchhhHHHHHHHHhcCCCCCccccccccccc--cccCCCCCCccHHHHHHHHHhhhhCCCCCC-----CHHHHH
Q psy4039         431 FVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV--NALPQLNTNVPEVMRRLVAKLLENDPSDRP-----SAELAA  503 (588)
Q Consensus       431 ~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~--~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rp-----s~~e~l  503 (588)
                        ++.++||||+||++|||++|+.||.+.........  .....++..+|+++++++.+||+.||.+|+     |+++++
T Consensus       178 --y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~~dp~~R~~~~r~t~~~il  255 (316)
T d1fota_         178 --YNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKILNAELRFPPFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVK  255 (316)
T ss_dssp             --BCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHH
T ss_pred             --CCchhhccccchhHHHHHhCCCCCCCcCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhhhCHHhccccchhhHHHHH
Confidence              45789999999999999999999987533222211  223356678999999999999999999996     899998


Q ss_pred             HHHhhhhhcCCccccCC
Q psy4039         504 TVCQLYLWAPKHWLYGA  520 (588)
Q Consensus       504 ~~L~~~~~~~h~w~~~~  520 (588)
                      +         |||+++.
T Consensus       256 ~---------Hp~f~~i  263 (316)
T d1fota_         256 N---------HPWFKEV  263 (316)
T ss_dssp             T---------SGGGSSC
T ss_pred             c---------CcccccC
Confidence            8         9999753

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=100.00  E-value=1.9e-52  Score=437.66  Aligned_cols=253  Identities=25%  Similarity=0.346  Sum_probs=208.4

Q ss_pred             ccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCC
Q psy4039         194 KVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPH  271 (588)
Q Consensus       194 ~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~H  271 (588)
                      .+++|++++.||+|+||+||+|+++  |+.||||++.....   .              ..+.+.+|+.+|+.+    +|
T Consensus        24 il~~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~~---~--------------~~~~~~~E~~il~~l----~H   82 (350)
T d1koaa2          24 VLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHE---S--------------DKETVRKEIQTMSVL----RH   82 (350)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCSH---H--------------HHHHHHHHHHHHHHT----CC
T ss_pred             CccCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEcccch---h--------------hHHHHHHHHHHHHhC----CC
Confidence            4589999999999999999999997  89999999953210   0              123466799999998    89


Q ss_pred             CceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy4039         272 PNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLL  350 (588)
Q Consensus       272 pNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~  350 (588)
                      ||||+++++|.+..                            .+|+||||| +|+|.+++......+++.++..|+.||+
T Consensus        83 pnIv~~~~~~~~~~----------------------------~~~ivmE~~~gg~L~~~l~~~~~~l~e~~~~~i~~qi~  134 (350)
T d1koaa2          83 PTLVNLHDAFEDDN----------------------------EMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVC  134 (350)
T ss_dssp             TTBCCEEEEEEETT----------------------------EEEEEECCCCSCBHHHHHTCTTSCBCHHHHHHHHHHHH
T ss_pred             CCCCcEEEEEEECC----------------------------EEEEEEEcCCCCCHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence            99999999998742                            499999999 6899999976655799999999999999


Q ss_pred             HHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCcc
Q psy4039         351 EGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFS  430 (588)
Q Consensus       351 ~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~  430 (588)
                      .||.|||++|||||||||+|||++.+..   +.+||+|||+|+.......      ....+||+.|||||++.+..    
T Consensus       135 ~aL~ylH~~~iiHrDiKp~NIll~~~~~---~~vkL~DFG~a~~~~~~~~------~~~~~gT~~Y~aPEv~~~~~----  201 (350)
T d1koaa2         135 KGLCHMHENNYVHLDLKPENIMFTTKRS---NELKLIDFGLTAHLDPKQS------VKVTTGTAEFAAPEVAEGKP----  201 (350)
T ss_dssp             HHHHHHHHTTEECCCCCGGGEEESSTTS---CCEEECCCTTCEECCTTSC------EEEECSCTTTCCHHHHHTCC----
T ss_pred             HHHHHHHhcCCeeeeechhHeeeccCCC---CeEEEeecchheecccccc------cceecCcccccCHHHHcCCC----
Confidence            9999999999999999999999975422   6899999999987654322      12567999999999998765    


Q ss_pred             CCCCCcCchhhHHHHHHHHhcCCCCCccccccccccc------cccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHH
Q psy4039         431 FVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEV------NALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAAT  504 (588)
Q Consensus       431 ~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~------~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~  504 (588)
                        ++.++||||+||++|||++|+.||.+......+..      ......+..+|+++++||.+||+.||++|||++|+++
T Consensus       202 --~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~eil~  279 (350)
T d1koaa2         202 --VGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDWNMDDSAFSGISEDGKDFIRKLLLADPNTRMTIHQALE  279 (350)
T ss_dssp             --BCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCSCCGGGGGCCHHHHHHHHHHCCSSGGGSCCHHHHHH
T ss_pred             --CChhHhhhhhhHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence              45689999999999999999999976432221111      1111223468899999999999999999999999999


Q ss_pred             HHhhhhhcCCccccC
Q psy4039         505 VCQLYLWAPKHWLYG  519 (588)
Q Consensus       505 ~L~~~~~~~h~w~~~  519 (588)
                               |||++.
T Consensus       280 ---------hp~~~~  285 (350)
T d1koaa2         280 ---------HPWLTP  285 (350)
T ss_dssp             ---------STTTSC
T ss_pred             ---------CcccCC
Confidence                     999983

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.6e-51  Score=432.86  Aligned_cols=254  Identities=23%  Similarity=0.320  Sum_probs=204.6

Q ss_pred             cccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhH---HHHHhhhcC
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNE---DMLMNSVEN  267 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~E---i~il~~l~~  267 (588)
                      +++++|++.+.||+|+||.||+|++.  |+.||||++.+..           +..+   .....+.+|   +.+++.+  
T Consensus         1 lslddy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~-----------~~~~---~~~~~~~~e~~~~~~l~~~--   64 (364)
T d1omwa3           1 LTMNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKR-----------IKMK---QGETLALNERIMLSLVSTG--   64 (364)
T ss_dssp             CCSTTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHH-----------HHHH---TCHHHHHHHHHHHHHHSSS--
T ss_pred             CCHHhCeeeeEEecCCCeEEEEEEECCCCCEEEEEEEchHH-----------cchh---hHHHHHHHHHHHHHHHhcC--
Confidence            35689999999999999999999997  8899999995311           1110   011223334   4445444  


Q ss_pred             CCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHH
Q psy4039         268 LPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLF  346 (588)
Q Consensus       268 l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~  346 (588)
                        +|||||+++++|.+..                            .+|+||||| +|+|.++|.... .+++.+++.++
T Consensus        65 --~hpnIv~l~~~~~~~~----------------------------~~~ivmE~~~gg~L~~~l~~~~-~~~e~~~~~~~  113 (364)
T d1omwa3          65 --DCPFIVCMSYAFHTPD----------------------------KLSFILDLMNGGDLHYHLSQHG-VFSEADMRFYA  113 (364)
T ss_dssp             --CCTTBCCEEEEEECSS----------------------------EEEEEECCCCSCBHHHHHHHHC-SCCHHHHHHHH
T ss_pred             --CCCcEEEEEEEEEECC----------------------------EEEEEEEecCCCcHHHHHHhcc-cccHHHHHHHH
Confidence              8999999999998732                            499999999 689999998765 89999999999


Q ss_pred             HHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCC
Q psy4039         347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP  426 (588)
Q Consensus       347 ~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~  426 (588)
                      .||+.||.|||++|||||||||+|||++.+     +.+||+|||+|+.......       ...+||+.|||||++....
T Consensus       114 ~qi~~aL~ylH~~~iiHrDlKP~NILl~~~-----g~iKl~DFGla~~~~~~~~-------~~~~GT~~y~APE~~~~~~  181 (364)
T d1omwa3         114 AEIILGLEHMHNRFVVYRDLKPANILLDEH-----GHVRISDLGLACDFSKKKP-------HASVGTHGYMAPEVLQKGV  181 (364)
T ss_dssp             HHHHHHHHHHHHTTEECCCCSGGGEEECSS-----SCEEECCCTTCEECSSSCC-------CSCCSCGGGCCHHHHSTTC
T ss_pred             HHHHHHHHHHHHCCccceeeccceeEEcCC-----CcEEEeeeceeeecCCCcc-------cccccccccchhHHhhcCC
Confidence            999999999999999999999999999988     8999999999987654321       2467999999999996543


Q ss_pred             CCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccc-----ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCC---
Q psy4039         427 GLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD-----YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPS---  498 (588)
Q Consensus       427 ~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~-----~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps---  498 (588)
                      .     ++.++|||||||++|||++|+.||.+......     ......+.++..+|+++++||.+||+.||.+|||   
T Consensus       182 ~-----~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~~  256 (364)
T d1omwa3         182 A-----YDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELPDSFSPELRSLLEGLLQRDVNRRLGCLG  256 (364)
T ss_dssp             C-----CCTHHHHHHHHHHHHHHHHSSCSSCSSCSSCHHHHHHHSSSCCCCCCSSSCHHHHHHHHHHTCSSTTTSTTTSS
T ss_pred             C-----CCcccchhHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcccCCCCCCCCCCHHHHHHHHHHcccCHHHhCCCcc
Confidence            1     45789999999999999999999976432211     1122334566789999999999999999999999   


Q ss_pred             --HHHHHHHHhhhhhcCCccccC
Q psy4039         499 --AELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       499 --~~e~l~~L~~~~~~~h~w~~~  519 (588)
                        ++++++         ||||+.
T Consensus       257 ~~a~eil~---------Hp~f~~  270 (364)
T d1omwa3         257 RGAQEVKE---------SPFFRS  270 (364)
T ss_dssp             STHHHHHT---------SGGGTT
T ss_pred             cCHHHHHc---------CccccC
Confidence              799888         999973

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7e-52  Score=416.62  Aligned_cols=252  Identities=17%  Similarity=0.222  Sum_probs=198.1

Q ss_pred             cccCCeEEeeeecccCceeEEEEEEC-CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCC
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPH  271 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~-g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~H  271 (588)
                      ++.++|++.+.||+|+||+||+|.+. +..||||+++....                  ..+.+.+|+.+++.+    +|
T Consensus         2 idp~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~------------------~~~~~~~E~~~l~~l----~H   59 (263)
T d1sm2a_           2 IDPSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM------------------SEEDFIEEAEVMMKL----SH   59 (263)
T ss_dssp             BCCSCEEEEEEEECCSSCCEEEEEETTTEEEEEEECCSSSS------------------CHHHHHHHHHHHHHC----CC
T ss_pred             CChHHcEEEEEEeeCCCeEEEEEEECCCCEEEEEEECCCcC------------------cHHHHHHHHHHHHhc----CC
Confidence            34588999999999999999999997 67899999854211                  234567899999998    99


Q ss_pred             CceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy4039         272 PNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLL  350 (588)
Q Consensus       272 pNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~  350 (588)
                      ||||+++++|.+..                            .+++||||+ +|+|.+++......+++..+..++.|++
T Consensus        60 pnIv~~~g~~~~~~----------------------------~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~i~~qia  111 (263)
T d1sm2a_          60 PKLVQLYGVCLEQA----------------------------PICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVC  111 (263)
T ss_dssp             TTBCCEEEEECSSS----------------------------SCEEEEECCTTCBHHHHHHTTTTCCCHHHHHHHHHHHH
T ss_pred             CCcccccceeccCC----------------------------ceEEEEEecCCCcHHHHhhccccCCCHHHHHHHHHHHH
Confidence            99999999997632                            389999999 6899999987766899999999999999


Q ss_pred             HHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCcc
Q psy4039         351 EGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFS  430 (588)
Q Consensus       351 ~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~  430 (588)
                      +||.|||+++|+||||||+|||++.+     +.+||+|||+|+........    ......||+.|||||++.+..    
T Consensus       112 ~gl~~lH~~~iiHrDlKp~Nill~~~-----~~~Kl~DFGla~~~~~~~~~----~~~~~~gt~~y~aPE~l~~~~----  178 (263)
T d1sm2a_         112 EGMAYLEEACVIHRDLAARNCLVGEN-----QVIKVSDFGMTRFVLDDQYT----SSTGTKFPVKWASPEVFSFSR----  178 (263)
T ss_dssp             HHHHHHHHTTCCCTTCSGGGEEECGG-----GCEEECSCC----------------------CTTSCCHHHHTTCC----
T ss_pred             HHHHhhhccceeecccchhheeecCC-----CCeEecccchheeccCCCce----eecceecCcccCChHHhcCCC----
Confidence            99999999999999999999999988     89999999999876543221    112456999999999998765    


Q ss_pred             CCCCCcCchhhHHHHHHHHhcC-CCCCccccccc---cccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHH
Q psy4039         431 FVNYSKSDAWTAGTVAYEIFGH-DNPFYQSARNT---DYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVC  506 (588)
Q Consensus       431 ~~~~~ksDVwS~Gvil~ElltG-~~Pf~~~~~~~---~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L  506 (588)
                        ++.++|||||||++|||+|+ .+||.......   .......+..|..+|+++.+|+.+||+.||++|||++++++.|
T Consensus       179 --~~~k~DVwS~Gvil~el~t~~~~~~~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~~p~~Rps~~~il~~L  256 (263)
T d1sm2a_         179 --YSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRLASTHVYQIMNHCWKERPEDRPAFSRLLRQL  256 (263)
T ss_dssp             --CCHHHHHHHHHHHHHHHHTTSCCTTCSCCHHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             --CCchhhhcchHHHHHHHHHCCCCCCCCCCHHHHHHHHHhcCCCCCccccCHHHHHHHHHHccCCHhHCcCHHHHHHHH
Confidence              55789999999999999995 55554432211   1222344556778999999999999999999999999999987


Q ss_pred             hhh
Q psy4039         507 QLY  509 (588)
Q Consensus       507 ~~~  509 (588)
                      +..
T Consensus       257 ~~i  259 (263)
T d1sm2a_         257 AEI  259 (263)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            743

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=1.7e-51  Score=416.81  Aligned_cols=264  Identities=23%  Similarity=0.357  Sum_probs=213.5

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||+||+|++.  ++.||||+++............+.        ..+.+.+|+.+++++   ..|||
T Consensus         3 ~~y~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~--------~~~~~~~E~~~l~~l---~~hpn   71 (277)
T d1phka_           3 ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQE--------LREATLKEVDILRKV---SGHPN   71 (277)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHH--------HHHHHHHHHHHHHHH---TTCTT
T ss_pred             ccCEEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHH--------HHHHHHHHHHHHHHh---cCCCC
Confidence            78999999999999999999986  899999999765433322211111        234567799999998   34999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      ||++++++.+.                            ..+|+||||| +|+|.++|..++ .+++.++..++.||++|
T Consensus        72 Iv~~~~~~~~~----------------------------~~~~ivmE~~~~g~L~~~l~~~~-~l~e~~~~~~~~qi~~a  122 (277)
T d1phka_          72 IIQLKDTYETN----------------------------TFFFLVFDLMKKGELFDYLTEKV-TLSEKETRKIMRALLEV  122 (277)
T ss_dssp             BCCEEEEEECS----------------------------SEEEEEEECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHH
T ss_pred             eEEEEeecccC----------------------------cceEEEEEcCCCchHHHHHHhcC-CCCHHHHHHHHHHHHHH
Confidence            99999999873                            2599999999 579999998765 89999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |+|||++||+||||||+|||++.+     +.+||+|||+|+....+...      ...+||+.|+|||++.+........
T Consensus       123 l~~lH~~~ivHrDlkp~Nill~~~-----~~~kl~DFG~a~~~~~~~~~------~~~~gt~~y~~PE~~~~~~~~~~~~  191 (277)
T d1phka_         123 ICALHKLNIVHRDLKPENILLDDD-----MNIKLTDFGFSCQLDPGEKL------REVCGTPSYLAPEIIECSMNDNHPG  191 (277)
T ss_dssp             HHHHHHTTEECSCCSGGGEEECTT-----CCEEECCCTTCEECCTTCCB------CCCCSCGGGCCHHHHHHHHCTTSCC
T ss_pred             HHHHHHcCCcccccccceEEEcCC-----CCeEEccchheeEccCCCce------eeeeccCCCCCHHHhhccccccCCC
Confidence            999999999999999999999988     89999999999887553221      2467999999999997543222223


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcccccccccc----c--cccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHH
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE----V--NALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVC  506 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~----~--~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L  506 (588)
                      ++.++||||+||++|||++|+.||.+........    .  ....+....+|+++++||.+||+.||++|||++|+++  
T Consensus       192 ~~~~~DiwslGvilyeml~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~~p~~R~s~~eil~--  269 (277)
T d1phka_         192 YGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMSGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALA--  269 (277)
T ss_dssp             BCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTT--
T ss_pred             CCchheEcccchhhhhhccCCCCCCCCCHHHHHHHHHhCCCCCCCcccccCCHHHHHHHHHHccCChhHCcCHHHHHc--
Confidence            5678999999999999999999998753322111    1  1111233478999999999999999999999999988  


Q ss_pred             hhhhhcCCccccC
Q psy4039         507 QLYLWAPKHWLYG  519 (588)
Q Consensus       507 ~~~~~~~h~w~~~  519 (588)
                             ||||++
T Consensus       270 -------h~~~~~  275 (277)
T d1phka_         270 -------HPFFQQ  275 (277)
T ss_dssp             -------SGGGCT
T ss_pred             -------CHHHHH
Confidence                   999975

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=100.00  E-value=5.9e-52  Score=434.18  Aligned_cols=252  Identities=21%  Similarity=0.306  Sum_probs=208.6

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      .++|++.+.||+|+||+||+|++.  |+.||||++......                 ....+.+|+.+|+.+    +||
T Consensus        28 ~d~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~-----------------~~~~~~~Ei~il~~l----~Hp   86 (352)
T d1koba_          28 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPL-----------------DKYTVKNEISIMNQL----HHP   86 (352)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHH-----------------HHHHHHHHHHHHTTC----CST
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcchh-----------------HHHHHHHHHHHHHhC----CCC
Confidence            478999999999999999999986  899999999642100                 123456799999987    999


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLE  351 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~  351 (588)
                      |||+++++|.+..                            .+|+||||| +|+|.+++......+++.+++.|+.||+.
T Consensus        87 nIv~~~~~~~~~~----------------------------~~~ivmE~~~gg~L~~~~~~~~~~l~e~~~~~i~~qi~~  138 (352)
T d1koba_          87 KLINLHDAFEDKY----------------------------EMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACE  138 (352)
T ss_dssp             TBCCEEEEEECSS----------------------------EEEEEEECCCCCBHHHHTTCTTCCBCHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEEECC----------------------------EEEEEEEcCCCChHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence            9999999998732                            599999999 68999988776657999999999999999


Q ss_pred             HHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccC
Q psy4039         352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF  431 (588)
Q Consensus       352 gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~  431 (588)
                      ||.|||++||+||||||+|||++....   +.+||+|||+|+....+..      .....||+.|||||++.+..     
T Consensus       139 aL~ylH~~~iiHRDiKp~NILl~~~~~---~~vkL~DFGla~~~~~~~~------~~~~~gt~~y~aPE~~~~~~-----  204 (352)
T d1koba_         139 GLKHMHEHSIVHLDIKPENIMCETKKA---SSVKIIDFGLATKLNPDEI------VKVTTATAEFAAPEIVDREP-----  204 (352)
T ss_dssp             HHHHHHHTTEECCCCCGGGEEESSTTC---CCEEECCCTTCEECCTTSC------EEEECSSGGGCCHHHHTTCC-----
T ss_pred             HHHHHHHCCeeecccccccccccccCC---CeEEEeecccceecCCCCc------eeeccCcccccCHHHHcCCC-----
Confidence            999999999999999999999985322   7899999999988755322      12467999999999998765     


Q ss_pred             CCCCcCchhhHHHHHHHHhcCCCCCcccccccccc------ccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHH
Q psy4039         432 VNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE------VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATV  505 (588)
Q Consensus       432 ~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~------~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~  505 (588)
                       ++.++||||+||++|||+||+.||.+........      .......+..+|+++++||.+||+.||.+|||++|+++ 
T Consensus       205 -~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~eil~-  282 (352)
T d1koba_         205 -VGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDWEFDEDAFSSVSPEAKDFIKNLLQKEPRKRLTVHDALE-  282 (352)
T ss_dssp             -BCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHHCCCCCCSSTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHT-
T ss_pred             -CCCccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHccCChhHCcCHHHHhc-
Confidence             4578999999999999999999998743222111      11122345678999999999999999999999999998 


Q ss_pred             HhhhhhcCCccccC
Q psy4039         506 CQLYLWAPKHWLYG  519 (588)
Q Consensus       506 L~~~~~~~h~w~~~  519 (588)
                              |||++.
T Consensus       283 --------Hp~~~~  288 (352)
T d1koba_         283 --------HPWLKG  288 (352)
T ss_dssp             --------STTTSS
T ss_pred             --------CHhhCC
Confidence                    999983

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-52  Score=422.66  Aligned_cols=253  Identities=20%  Similarity=0.246  Sum_probs=207.9

Q ss_pred             cccCCeEEeee-ecccCceeEEEEEEC----CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcC
Q psy4039         193 VKVDDIQIGKF-IAKGTNAVVYEATFR----GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVEN  267 (588)
Q Consensus       193 i~~~~~~~~~~-IG~G~fG~Vy~a~~~----g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~  267 (588)
                      +.-++|.+.+. ||+|+||+||+|.++    +..||||+++...   +.             ...+.+.+|+.+|+.+  
T Consensus         5 l~~~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~---~~-------------~~~~~~~~E~~il~~l--   66 (285)
T d1u59a_           5 LKRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGT---EK-------------ADTEEMMREAQIMHQL--   66 (285)
T ss_dssp             CCGGGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSC---CH-------------HHHHHHHHHHHHHHHC--
T ss_pred             ecccCeEECCcEEecccCeEEEEEEEecCCCcEEEEEEEEChhc---CH-------------HHHHHHHHHHHHHHhC--
Confidence            34477888884 999999999999875    4579999995321   11             0224567899999998  


Q ss_pred             CCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHH
Q psy4039         268 LPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLF  346 (588)
Q Consensus       268 l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~  346 (588)
                        +|||||++++++.+.                             .+|+||||| +|+|.+++......+++.++..++
T Consensus        67 --~HpnIv~l~g~~~~~-----------------------------~~~lvmE~~~~g~L~~~l~~~~~~l~~~~~~~i~  115 (285)
T d1u59a_          67 --DNPYIVRLIGVCQAE-----------------------------ALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELL  115 (285)
T ss_dssp             --CCTTBCCEEEEEESS-----------------------------SEEEEEECCTTEEHHHHHTTCTTTSCHHHHHHHH
T ss_pred             --CCCCEeeEeeeeccC-----------------------------eEEEEEEeCCCCcHHHHhhccccCCCHHHHHHHH
Confidence              999999999998752                             289999999 579999987665589999999999


Q ss_pred             HHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCC
Q psy4039         347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP  426 (588)
Q Consensus       347 ~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~  426 (588)
                      .||++||.|||+++|+||||||+|||++.+     +.+||+|||+|+.........  ......+||+.|||||++.+..
T Consensus       116 ~qi~~gL~ylH~~~iiHrDlKp~Nill~~~-----~~~Kl~DFGla~~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~  188 (285)
T d1u59a_         116 HQVSMGMKYLEEKNFVHRDLAARNVLLVNR-----HYAKISDFGLSKALGADDSYY--TARSAGKWPLKWYAPECINFRK  188 (285)
T ss_dssp             HHHHHHHHHHHHTTEECCCCSGGGEEEEET-----TEEEECCCTTCEECTTCSCEE--CCCCSSCCCGGGCCHHHHHHCE
T ss_pred             HHHHHHHHHHHhCCeecCcCchhheeeccC-----Cceeeccchhhhccccccccc--ccccccccCccccChHHHhCCC
Confidence            999999999999999999999999999988     899999999999875532211  1122457999999999998765


Q ss_pred             CCccCCCCCcCchhhHHHHHHHHhc-CCCCCccccccc---cccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHH
Q psy4039         427 GLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNT---DYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELA  502 (588)
Q Consensus       427 ~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~---~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~  502 (588)
                            ++.++|||||||++|||+| |+.||.+.....   .+.....++.+..+|+++.+||.+||+.||++|||+.++
T Consensus       189 ------~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~~p~~RPs~~~i  262 (285)
T d1u59a_         189 ------FSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKRMECPPECPPELYALMSDCWIYKWEDRPDFLTV  262 (285)
T ss_dssp             ------ECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHH
T ss_pred             ------CCccchhhcchHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHcCCCHhHCcCHHHH
Confidence                  4578999999999999998 899997643221   123344567788999999999999999999999999999


Q ss_pred             HHHHh
Q psy4039         503 ATVCQ  507 (588)
Q Consensus       503 l~~L~  507 (588)
                      ++.|+
T Consensus       263 ~~~L~  267 (285)
T d1u59a_         263 EQRMR  267 (285)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99888

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.4e-52  Score=429.14  Aligned_cols=259  Identities=22%  Similarity=0.281  Sum_probs=209.6

Q ss_pred             CCccccccCCeEEeeeecccCceeEEEEEECC-------eeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHH
Q psy4039         188 PDVDDVKVDDIQIGKFIAKGTNAVVYEATFRG-------VEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDM  260 (588)
Q Consensus       188 ~~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~g-------~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~  260 (588)
                      ...|+++.++|++++.||+|+||+||+|++.+       ..||||++.....                ......+.+|+.
T Consensus        29 ~~kwei~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~----------------~~~~~~~~~E~~   92 (325)
T d1rjba_          29 DLKWEFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKAD----------------SSEREALMSELK   92 (325)
T ss_dssp             CGGGBCCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC----------------------CHHHHHHHH
T ss_pred             CccccCCHHHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccC----------------HHHHHHHHHHHH
Confidence            45578888999999999999999999999862       3699999853211                113345677999


Q ss_pred             HHhhhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc-----
Q psy4039         261 LMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC-----  334 (588)
Q Consensus       261 il~~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~-----  334 (588)
                      +|.++   .+|||||+++++|.+..                            .+|+||||| +|+|.++|+.+.     
T Consensus        93 ~l~~l---~~HpnIv~l~~~~~~~~----------------------------~~~lv~Ey~~~g~L~~~l~~~~~~~~~  141 (325)
T d1rjba_          93 MMTQL---GSHENIVNLLGACTLSG----------------------------PIYLIFEYCCYGDLLNYLRSKREKFSE  141 (325)
T ss_dssp             HHHHH---CCCTTBCCEEEEECSSS----------------------------SCEEEEECCTTCBHHHHHHTTTTCC--
T ss_pred             HHHHh---cCCCcEeEEEEEEeeCC----------------------------eEEEEEEcCCCCcHHHHHHhccCCCcc
Confidence            99887   58999999999998742                            389999999 689999997642     


Q ss_pred             -----------------CCCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCC
Q psy4039         335 -----------------AQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKS  397 (588)
Q Consensus       335 -----------------~~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~  397 (588)
                                       ..+++.+++.++.||++||.|||+++||||||||+|||++.+     +.+||+|||+|+....
T Consensus       142 ~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~~~IiHRDlKp~Nill~~~-----~~~Kl~DFGla~~~~~  216 (325)
T d1rjba_         142 DEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAARNVLVTHG-----KVVKICDFGLARDIMS  216 (325)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHHHHHHHTTEEETTCSGGGEEEETT-----TEEEECCCGGGSCGGG
T ss_pred             hhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCchhccccccC-----CeEEEeeccccccccC
Confidence                             248999999999999999999999999999999999999988     8999999999987544


Q ss_pred             CCccccccccccccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc----ccccccCC
Q psy4039         398 GLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD----YEVNALPQ  472 (588)
Q Consensus       398 ~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~----~~~~~~~~  472 (588)
                      ....   .......||+.|||||++.+..      ++.++|||||||++|||+| |++||.+......    ......++
T Consensus       217 ~~~~---~~~~~~~gt~~y~aPE~l~~~~------~~~~~DiwS~Gvil~emlt~g~~Pf~~~~~~~~~~~~~~~~~~~~  287 (325)
T d1rjba_         217 DSNY---VVRGNARLPVKWMAPESLFEGI------YTIKSDVWSYGILLWEIFSLGVNPYPGIPVDANFYKLIQNGFKMD  287 (325)
T ss_dssp             CTTS---EEETTEEECGGGCCHHHHHHCC------CCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHHTTCCCC
T ss_pred             CCce---eeeccccCCCccCChHHHcCCC------CCcceeccchhHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCCC
Confidence            2221   1112456899999999998765      4578999999999999997 8999976432221    22334456


Q ss_pred             CCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHh
Q psy4039         473 LNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       473 ~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~  507 (588)
                      .+..+|+++++||.+||+.||++|||++|+++.|.
T Consensus       288 ~p~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~  322 (325)
T d1rjba_         288 QPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFLG  322 (325)
T ss_dssp             CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHh
Confidence            77889999999999999999999999999999775

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.2e-51  Score=428.31  Aligned_cols=253  Identities=23%  Similarity=0.353  Sum_probs=211.4

Q ss_pred             ccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCC
Q psy4039         192 DVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLP  269 (588)
Q Consensus       192 ~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~  269 (588)
                      ...+++|++.+.||+|+||+||+|+++  |+.||||++.+..           ...   ....+.+.+|+.+|+.+    
T Consensus        37 ~~~ld~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~-----------~~~---~~~~~~~~~E~~il~~l----   98 (350)
T d1rdqe_          37 TAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQK-----------VVK---LKQIEHTLNEKRILQAV----   98 (350)
T ss_dssp             CCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHH-----------HHH---TTCHHHHHHHHHHHTTC----
T ss_pred             CCCccCeEEEEEeecCcCcEEEEEEECCCCCEEEEEEEchHH-----------ccC---HHHHHHHHHHHHHHHHc----
Confidence            345689999999999999999999997  8999999995311           011   11234567899999987    


Q ss_pred             CCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHH
Q psy4039         270 PHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQ  348 (588)
Q Consensus       270 ~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~q  348 (588)
                      +|||||++++++.+..                            .+++||||+ +|+|.+++...+ .+++.++..++.|
T Consensus        99 ~hpnIv~~~~~~~~~~----------------------------~~~~v~e~~~~g~l~~~l~~~~-~l~e~~~~~i~~q  149 (350)
T d1rdqe_          99 NFPFLVKLEFSFKDNS----------------------------NLYMVMEYVAGGEMFSHLRRIG-RFSEPHARFYAAQ  149 (350)
T ss_dssp             CCTTBCCEEEEEECSS----------------------------EEEEEEECCTTCBHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred             CCCcEeeccccccccc----------------------------ccccccccccccchhhhHhhcC-CCCHHHHHHHHHH
Confidence            9999999999998732                            489999999 689999998765 8999999999999


Q ss_pred             HHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCC
Q psy4039         349 LLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGL  428 (588)
Q Consensus       349 l~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~  428 (588)
                      |+.||.|||++|||||||||+|||++.+     +.+||+|||+|+......        ...+||+.|||||++.+..  
T Consensus       150 i~~aL~yLH~~~iiHRDIKP~NILl~~~-----g~ikL~DFG~a~~~~~~~--------~~~~Gt~~Y~APE~~~~~~--  214 (350)
T d1rdqe_         150 IVLTFEYLHSLDLIYRDLKPENLLIDQQ-----GYIQVTDFGFAKRVKGRT--------WTLCGTPEALAPEIILSKG--  214 (350)
T ss_dssp             HHHHHHHHHHTTEECCCCSGGGEEECTT-----SCEEECCCTTCEECSSCB--------CCCEECGGGCCHHHHTTCC--
T ss_pred             HHHHHHHHHhCCEecCcCCHHHcccCCC-----CCEEeeeceeeeeccccc--------ccccCccccCCHHHHcCCC--
Confidence            9999999999999999999999999987     899999999998765421        2467999999999998765  


Q ss_pred             ccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccccc--ccccCCCCCCccHHHHHHHHHhhhhCCCCCC-----CHHH
Q psy4039         429 FSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVAKLLENDPSDRP-----SAEL  501 (588)
Q Consensus       429 ~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~--~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rp-----s~~e  501 (588)
                          ++.++|||||||++|||++|+.||.+......+.  ....+..+..+|+++.+||++||+.||.+|+     |+++
T Consensus       215 ----~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~~dP~kR~~~~r~t~~e  290 (350)
T d1rdqe_         215 ----YNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVND  290 (350)
T ss_dssp             ----BCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHH
T ss_pred             ----CCccccccchhHHHHHHHhCCCCCCCcCHHHHHHHHhcCCCCCCccCCHHHHHHHHHHhhhCHHhccccccccHHH
Confidence                4578999999999999999999998753322221  1233456778999999999999999999995     8999


Q ss_pred             HHHHHhhhhhcCCccccC
Q psy4039         502 AATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       502 ~l~~L~~~~~~~h~w~~~  519 (588)
                      +++         ||||+.
T Consensus       291 ll~---------Hp~f~~  299 (350)
T d1rdqe_         291 IKN---------HKWFAT  299 (350)
T ss_dssp             HHT---------SGGGTT
T ss_pred             HHc---------CccccC
Confidence            988         999974

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-51  Score=416.71  Aligned_cols=262  Identities=20%  Similarity=0.268  Sum_probs=204.4

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEECC------eeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhh
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATFRG------VEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNS  264 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~~g------~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~  264 (588)
                      .++..+.|++.++||+|+||.||+|.+++      ..||||++....   ..             .....+.+|+.+++.
T Consensus         2 ~ei~~~~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~---~~-------------~~~~~~~~E~~il~~   65 (283)
T d1mqba_           2 TEIHPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGY---TE-------------KQRVDFLGEAGIMGQ   65 (283)
T ss_dssp             CBCCTTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTC---CH-------------HHHHHHHHHHHHHHT
T ss_pred             CcCCHHHeEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECccc---Ch-------------HHHHHHHHHHHHHHh
Confidence            46677899999999999999999999862      479999985321   11             022346789999999


Q ss_pred             hcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHH
Q psy4039         265 VENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERV  343 (588)
Q Consensus       265 l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~  343 (588)
                      +    +|||||++++++.+..                            .+++||||+ +|++.+++......+++.++.
T Consensus        66 l----~H~nIv~~~g~~~~~~----------------------------~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~  113 (283)
T d1mqba_          66 F----SHHNIIRLEGVISKYK----------------------------PMMIITEYMENGALDKFLREKDGEFSVLQLV  113 (283)
T ss_dssp             C----CCTTBCCEEEEECSSS----------------------------SEEEEEECCTTEEHHHHHHHTTTCSCHHHHH
T ss_pred             c----CCCCEeeeeEEEecCC----------------------------ceEEEEEecccCcchhhhhcccccccHHHHH
Confidence            7    9999999999997632                            389999999 678999888776689999999


Q ss_pred             HHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHh
Q psy4039         344 LLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVAL  423 (588)
Q Consensus       344 ~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~  423 (588)
                      .++.||+.||.|||+++|+||||||+||||+.+     +.+||+|||+|+.........  .......||+.|||||++.
T Consensus       114 ~i~~~i~~gl~~lH~~~iiHrDlKp~NILl~~~-----~~~Kl~DFGla~~~~~~~~~~--~~~~~~~gt~~Y~APE~l~  186 (283)
T d1mqba_         114 GMLRGIAAGMKYLANMNYVHRDLAARNILVNSN-----LVCKVSDFGLSRVLEDDPEAT--YTTSGGKIPIRWTAPEAIS  186 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTT-----CCEEECCCCC-------------------CCCGGGSCHHHHH
T ss_pred             HHHHHHHHhhhhccccccccCccccceEEECCC-----CeEEEcccchhhcccCCCccc--eEeccCCCCccccCHHHHc
Confidence            999999999999999999999999999999988     899999999998765432211  1122456899999999998


Q ss_pred             cCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccc----cccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCH
Q psy4039         424 ATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNT----DYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSA  499 (588)
Q Consensus       424 ~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~----~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~  499 (588)
                      +..      ++.++|||||||++|||++|..|+.......    .......++.+..+|+++.+||.+||+.||++|||+
T Consensus       187 ~~~------~~~~sDI~S~Gvil~el~t~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~~p~~RPt~  260 (283)
T d1mqba_         187 YRK------FTSASDVWSFGIVMWEVMTYGERPYWELSNHEVMKAINDGFRLPTPMDCPSAIYQLMMQCWQQERARRPKF  260 (283)
T ss_dssp             SCC------CCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCCCCCTTCBHHHHHHHHHHTCSSTTTSCCH
T ss_pred             cCC------CCCcccccccHHHHHHHHhCCCCccccCCHHHHHHHHhccCCCCCchhhHHHHHHHHHHHCcCCHhHCcCH
Confidence            765      5578999999999999999766654432111    122334556778899999999999999999999999


Q ss_pred             HHHHHHHhhhhhcC
Q psy4039         500 ELAATVCQLYLWAP  513 (588)
Q Consensus       500 ~e~l~~L~~~~~~~  513 (588)
                      +++++.|+.+...|
T Consensus       261 ~eil~~L~~l~~~p  274 (283)
T d1mqba_         261 ADIVSILDKLIRAP  274 (283)
T ss_dssp             HHHHHHHHHHHHSG
T ss_pred             HHHHHHHHHHhhCc
Confidence            99999887665543

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-51  Score=417.00  Aligned_cols=249  Identities=22%  Similarity=0.243  Sum_probs=200.0

Q ss_pred             eEEe-eeecccCceeEEEEEEC----CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         198 IQIG-KFIAKGTNAVVYEATFR----GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       198 ~~~~-~~IG~G~fG~Vy~a~~~----g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      +.+. ++||+|+||+||+|.++    ++.||||+++.....               ....+.+.+|+.+|+++    +||
T Consensus         8 ~~le~k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~---------------~~~~~~~~~E~~il~~l----~Hp   68 (277)
T d1xbba_           8 LTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEAND---------------PALKDELLAEANVMQQL----DNP   68 (277)
T ss_dssp             EEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC--------------------CHHHHHHHHHHHHHHTC----CCT
T ss_pred             CeecCCCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCC---------------HHHHHHHHHHHHHHHhC----CCC
Confidence            3443 57999999999999875    468999999532111               11234577899999987    999


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLE  351 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~  351 (588)
                      |||+++++|.+.                             ..++||||+ +|+|.+++.... .+++.++..++.||+.
T Consensus        69 nIv~~~g~~~~~-----------------------------~~~lvmE~~~~g~L~~~l~~~~-~l~~~~~~~i~~qi~~  118 (277)
T d1xbba_          69 YIVRMIGICEAE-----------------------------SWMLVMEMAELGPLNKYLQQNR-HVKDKNIIELVHQVSM  118 (277)
T ss_dssp             TBCCEEEEEESS-----------------------------SEEEEEECCTTEEHHHHHHHCT-TCCHHHHHHHHHHHHH
T ss_pred             CCceEEEEeccC-----------------------------CEEEEEEcCCCCcHHHHHhhcc-CCCHHHHHHHHHHHHH
Confidence            999999998652                             278999999 689999998754 7999999999999999


Q ss_pred             HHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccC
Q psy4039         352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF  431 (588)
Q Consensus       352 gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~  431 (588)
                      ||.|||+++|+||||||+|||++.+     +.+||+|||+|+.........  .......||+.|||||++.+..     
T Consensus       119 gl~ylH~~~iiHrDlKp~Nill~~~-----~~~kl~DFGla~~~~~~~~~~--~~~~~~~gt~~y~APE~l~~~~-----  186 (277)
T d1xbba_         119 GMKYLEESNFVHRDLAARNVLLVTQ-----HYAKISDFGLSKALRADENYY--KAQTHGKWPVKWYAPECINYYK-----  186 (277)
T ss_dssp             HHHHHHHTTEECSCCSGGGEEEEET-----TEEEECCCTTCEECCTTCSEE--EC----CCCGGGCCHHHHHHCE-----
T ss_pred             HHhhHHhCCcccCCCcchhhccccc-----Ccccccchhhhhhcccccccc--ccccccCCCceecCchhhcCCC-----
Confidence            9999999999999999999999988     899999999998765432221  1122467999999999998765     


Q ss_pred             CCCCcCchhhHHHHHHHHhc-CCCCCccccccc---cccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHh
Q psy4039         432 VNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNT---DYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       432 ~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~---~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~  507 (588)
                       ++.++|||||||++|||+| |+.||.+.....   .+.....++.+..+|+++.+||.+||+.||++|||++++++.|+
T Consensus       187 -~~~~sDiwS~Gv~l~ellt~g~~Pf~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~li~~cl~~dp~~RPs~~~i~~~L~  265 (277)
T d1xbba_         187 -FSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLR  265 (277)
T ss_dssp             -EEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHH
T ss_pred             -CCchhhhccchhhhhHHhhCCCCCCCCCCHHHHHHHHHcCCCCCCCcccCHHHHHHHHHHcCCCHhHCcCHHHHHHHhh
Confidence             4578999999999999998 899998643221   12234456778899999999999999999999999999988887


Q ss_pred             h
Q psy4039         508 L  508 (588)
Q Consensus       508 ~  508 (588)
                      .
T Consensus       266 ~  266 (277)
T d1xbba_         266 N  266 (277)
T ss_dssp             H
T ss_pred             C
Confidence            3

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.8e-51  Score=409.36  Aligned_cols=249  Identities=21%  Similarity=0.251  Sum_probs=208.9

Q ss_pred             ccCCeEEeeeecccCceeEEEEEEC-CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         194 KVDDIQIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       194 ~~~~~~~~~~IG~G~fG~Vy~a~~~-g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      +.++|+++++||+|+||+||+|+++ ++.||||++++...                  ..+.+.+|+.+++.+    +||
T Consensus         2 ~~~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~~~------------------~~~~~~~Ev~~~~~l----~Hp   59 (258)
T d1k2pa_           2 DPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM------------------SEDEFIEEAKVMMNL----SHE   59 (258)
T ss_dssp             CCCCCCCCCCCCEETTEEEEEEEETTTEEEEEEEEESSSS------------------CHHHHHHHHHHHHTC----CCT
T ss_pred             ChHHCEEeEEEecCCCeEEEEEEECCCCEEEEEEECcCcC------------------CHHHHHHHHHHHHhc----CCC
Confidence            4589999999999999999999997 66899999964321                  224567899999988    999


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLE  351 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~  351 (588)
                      |||+++++|.+..                            .+++||||+ +|+|.+++......+++..++.++.|+++
T Consensus        60 nIv~~~g~~~~~~----------------------------~~~iv~Ey~~~g~l~~~~~~~~~~~~~~~~~~i~~qi~~  111 (258)
T d1k2pa_          60 KLVQLYGVCTKQR----------------------------PIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCE  111 (258)
T ss_dssp             TBCCEEEEECCSS----------------------------SEEEEEECCTTEEHHHHHHSGGGCCCHHHHHHHHHHHHH
T ss_pred             ceeeEEEEEeeCC----------------------------ceEEEEEccCCCcHHHhhhccccCCcHHHHHHHHHHHHH
Confidence            9999999998642                            399999999 68999998877668999999999999999


Q ss_pred             HHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccC
Q psy4039         352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF  431 (588)
Q Consensus       352 gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~  431 (588)
                      ||.|||++||+||||||+|||++.+     +.+||+|||+|+........    ......||+.|||||++.+..     
T Consensus       112 gl~~LH~~~iiH~dlk~~Nill~~~-----~~~kl~DfG~a~~~~~~~~~----~~~~~~~t~~y~aPE~~~~~~-----  177 (258)
T d1k2pa_         112 AMEYLESKQFLHRDLAARNCLVNDQ-----GVVKVSDFGLSRYVLDDEYT----SSVGSKFPVRWSPPEVLMYSK-----  177 (258)
T ss_dssp             HHHHHHHTTBCCSCCSGGGEEECTT-----CCEEECCCSSCCBCSSSSCC----CCCCSCCCGGGCCHHHHHHCC-----
T ss_pred             HHHHHhhcCcccccccceeEEEcCC-----CcEEECcchhheeccCCCce----eecccCCCCCcCCcHHhcCCC-----
Confidence            9999999999999999999999987     89999999999876543221    122467999999999998776     


Q ss_pred             CCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHh
Q psy4039         432 VNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQ  507 (588)
Q Consensus       432 ~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~  507 (588)
                       ++.++|||||||++|||+| |+.||.+......   +.....+..|..+|+++++||.+||+.||++|||++++++.|.
T Consensus       178 -~~~ksDiwS~G~~l~el~t~g~~Pf~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~  256 (258)
T d1k2pa_         178 -FSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRPHLASEKVYTIMYSCWHEKADERPTFKILLSNIL  256 (258)
T ss_dssp             -CCHHHHHHHHHHHHHHHHTTSCCTTTTSCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHH
T ss_pred             -CCcceeecccchhhHhHHhcCCCCCCCCCHHHHHHHHHhCCCCCCcccccHHHHHHHHHHccCCHhHCcCHHHHHHHhh
Confidence             4578999999999999998 8999976432211   2223445677889999999999999999999999999999664

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-51  Score=413.47  Aligned_cols=256  Identities=23%  Similarity=0.304  Sum_probs=200.8

Q ss_pred             ccccccCCeEEeeeecccCceeEEEEEEC-----CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhh
Q psy4039         190 VDDVKVDDIQIGKFIAKGTNAVVYEATFR-----GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNS  264 (588)
Q Consensus       190 ~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-----g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~  264 (588)
                      +|++..++|++++.||+|+||.||+|++.     +..||||.++...   ..             ...+.+.+|+.+|+.
T Consensus         1 ~~ei~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~---~~-------------~~~~~~~~E~~~l~~   64 (273)
T d1mp8a_           1 DYEIQRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCT---SD-------------SVREKFLQEALTMRQ   64 (273)
T ss_dssp             CCBCCGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTT---SH-------------HHHHHHHHHHHHHHT
T ss_pred             CCCcCHHHeEEEEEEeeCCCcEEEEEEEecCCceeEEEEEEEecccc---CH-------------HHHHHHHHHHHHHHh
Confidence            47788899999999999999999999986     3568999884311   11             123456789999998


Q ss_pred             hcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHH
Q psy4039         265 VENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERV  343 (588)
Q Consensus       265 l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~  343 (588)
                      +    +|||||++++++.+.                             .+|+||||+ +|+|.+++......+++..++
T Consensus        65 l----~HpnIv~l~~~~~~~-----------------------------~~~iv~E~~~~g~l~~~~~~~~~~l~~~~~~  111 (273)
T d1mp8a_          65 F----DHPHIVKLIGVITEN-----------------------------PVWIIMELCTLGELRSFLQVRKYSLDLASLI  111 (273)
T ss_dssp             C----CCTTBCCEEEEECSS-----------------------------SCEEEEECCTTEEHHHHHHHTTTTSCHHHHH
T ss_pred             C----CCCCEeeEEEEEecC-----------------------------eEEEEEEeccCCcHHhhhhccCCCCCHHHHH
Confidence            7    999999999998652                             289999999 689999988776689999999


Q ss_pred             HHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHh
Q psy4039         344 LLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVAL  423 (588)
Q Consensus       344 ~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~  423 (588)
                      .++.||++||.|||+++|+||||||+|||++.+     +.+||+|||+|+........    ......||+.|+|||++.
T Consensus       112 ~~~~qi~~gl~ylH~~~iiHrDlKp~NIll~~~-----~~~Kl~DfG~a~~~~~~~~~----~~~~~~gt~~y~apE~l~  182 (273)
T d1mp8a_         112 LYAYQLSTALAYLESKRFVHRDIAARNVLVSSN-----DCVKLGDFGLSRYMEDSTYY----KASKGKLPIKWMAPESIN  182 (273)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEET-----TEEEECC-----------------------CCGGGCCHHHHH
T ss_pred             HHHHHHHHHhhhhcccCeeccccchhheeecCC-----CcEEEccchhheeccCCcce----eccceecCcccchhhHhc
Confidence            999999999999999999999999999999988     89999999999876542221    112456899999999998


Q ss_pred             cCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCccccccccc---cccccCCCCCCccHHHHHHHHHhhhhCCCCCCCH
Q psy4039         424 ATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTDY---EVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSA  499 (588)
Q Consensus       424 ~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~~---~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~  499 (588)
                      +..      ++.++|||||||++|||++ |.+||.+.......   .....++.+..+|+++++||.+||+.||++|||+
T Consensus       183 ~~~------~~~~~DiwSlGvil~e~lt~g~~P~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~  256 (273)
T d1mp8a_         183 FRR------FTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRF  256 (273)
T ss_dssp             HCC------CSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             cCC------CCCccccccchHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCHhHCcCH
Confidence            776      4578999999999999998 89999765333222   2334456788999999999999999999999999


Q ss_pred             HHHHHHHhhh
Q psy4039         500 ELAATVCQLY  509 (588)
Q Consensus       500 ~e~l~~L~~~  509 (588)
                      +++++.|+.+
T Consensus       257 ~ei~~~L~~i  266 (273)
T d1mp8a_         257 TELKAQLSTI  266 (273)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999977644

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-51  Score=413.44  Aligned_cols=255  Identities=22%  Similarity=0.293  Sum_probs=207.3

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++++.||+|+||+||+|++.  |+.||||++.+......           ........+.+|+.+|+.+.  ..|||
T Consensus         4 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~-----------~~~~~~~~~~~E~~il~~l~--~~h~n   70 (273)
T d1xwsa_           4 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDW-----------GELPNGTRVPMEVVLLKKVS--SGFSG   70 (273)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCE-----------EECTTCCEEEHHHHHHHHHC--SSSCS
T ss_pred             CeEEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccch-----------hhhhHHHHHHHHHHHHHHhc--cCCCC
Confidence            67999999999999999999997  88999999964322211           01112345678999999882  14999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCC--CcHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYN--TDLRNYLRERCAQLSMHERVLLFTQLLE  351 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~--gsL~~~L~~~~~~l~~~~~~~i~~ql~~  351 (588)
                      ||++++++.+..                            ..|+||||+.  +++.+++.... .+++.+++.++.||++
T Consensus        71 Iv~~~~~~~~~~----------------------------~~~lv~e~~~~~~~l~~~~~~~~-~l~e~~~~~~~~qi~~  121 (273)
T d1xwsa_          71 VIRLLDWFERPD----------------------------SFVLILERPEPVQDLFDFITERG-ALQEELARSFFWQVLE  121 (273)
T ss_dssp             BCCEEEEEECSS----------------------------EEEEEEECCSSEEEHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred             ccEEEEEEeeCC----------------------------eEEEEEEeccCcchHHHHHhccC-CCCHHHHHHHHHHHHH
Confidence            999999998732                            5899999994  58888887764 8999999999999999


Q ss_pred             HHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccC
Q psy4039         352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF  431 (588)
Q Consensus       352 gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~  431 (588)
                      ||.|||++||+||||||+|||++.+.    +.+||+|||+|+......       ..+.+||+.|||||++.+...    
T Consensus       122 al~~lH~~~iiHrDiKp~NIll~~~~----~~vkl~DFG~a~~~~~~~-------~~~~~GT~~y~aPE~~~~~~~----  186 (273)
T d1xwsa_         122 AVRHCHNCGVLHRDIKDENILIDLNR----GELKLIDFGSGALLKDTV-------YTDFDGTRVYSPPEWIRYHRY----  186 (273)
T ss_dssp             HHHHHHHTTEECSCCSGGGEEEETTT----TEEEECCCTTCEECCSSC-------BCCCCSCGGGSCHHHHHHSCB----
T ss_pred             HHHHHHHCCCccccCcccceEEecCC----CeEEECccccceeccccc-------ccccccCCCcCCHHHHcCCCC----
Confidence            99999999999999999999998552    689999999998754321       124679999999999987652    


Q ss_pred             CCCCcCchhhHHHHHHHHhcCCCCCccccccccccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhh
Q psy4039         432 VNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLW  511 (588)
Q Consensus       432 ~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~  511 (588)
                       ++.++||||+||++|||++|+.||.+.....    .....++..+|+++++||.+||+.||++|||++|+++       
T Consensus       187 -~~~~~DiwSlGvilyell~g~~Pf~~~~~i~----~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~eil~-------  254 (273)
T d1xwsa_         187 -HGRSAAVWSLGILLYDMVCGDIPFEHDEEII----RGQVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQN-------  254 (273)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHSSCSCCSHHHHH----HCCCCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHT-------
T ss_pred             -CCcccccccceeeehhHhhCCCCCCCchHHh----hcccCCCCCCCHHHHHHHHHHccCCHhHCcCHHHHhc-------
Confidence             2356899999999999999999997643211    1223456789999999999999999999999999998       


Q ss_pred             cCCccccCCC
Q psy4039         512 APKHWLYGAT  521 (588)
Q Consensus       512 ~~h~w~~~~~  521 (588)
                        |||++...
T Consensus       255 --hp~~~~~~  262 (273)
T d1xwsa_         255 --HPWMQDVL  262 (273)
T ss_dssp             --SGGGSSCC
T ss_pred             --CHhhCCCC
Confidence              99998543

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-51  Score=423.76  Aligned_cols=254  Identities=22%  Similarity=0.322  Sum_probs=207.4

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      +++|++++.||+|+||+||+|+++  ++.||||++++..           ...+   ...+.+..|+.++...   ++||
T Consensus         1 iddy~i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~-----------~~~~---~~~~~~~~e~~~l~~~---~~hp   63 (320)
T d1xjda_           1 IEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDV-----------VLMD---DDVECTMVEKRVLSLA---WEHP   63 (320)
T ss_dssp             CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHH-----------HHHT---TCHHHHHHHHHHHHHH---TTCT
T ss_pred             CCCeEEeeEEecCCCcEEEEEEECCCCCEEEEEEEchhh-----------ccCh---HHHHHHHHHHHHHHHh---CCCC
Confidence            478999999999999999999996  8999999995311           0010   1223345566666543   4999


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLE  351 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~  351 (588)
                      |||++++++.+..                            .+|+||||+ +|+|.+++.... .+++.++..++.||+.
T Consensus        64 ~Iv~~~~~~~~~~----------------------------~~yivmEy~~~g~L~~~i~~~~-~~~e~~~~~~~~qi~~  114 (320)
T d1xjda_          64 FLTHMFCTFQTKE----------------------------NLFFVMEYLNGGDLMYHIQSCH-KFDLSRATFYAAEIIL  114 (320)
T ss_dssp             TBCCEEEEEECSS----------------------------EEEEEEECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHH
T ss_pred             cEEEEEEEEccCC----------------------------ceeEEEeecCCCcHHHHhhccC-CCCHHHHHHHHHHHHH
Confidence            9999999998742                            499999999 689999998765 8999999999999999


Q ss_pred             HHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccC
Q psy4039         352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF  431 (588)
Q Consensus       352 gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~  431 (588)
                      ||.|||+++|+||||||+|||++.+     +.+||+|||+|+.......     .....+||+.|||||++.+..     
T Consensus       115 al~ylH~~~iiHrDikp~NiL~~~~-----~~~kl~DFG~a~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~-----  179 (320)
T d1xjda_         115 GLQFLHSKGIVYRDLKLDNILLDKD-----GHIKIADFGMCKENMLGDA-----KTNTFCGTPDYIAPEILLGQK-----  179 (320)
T ss_dssp             HHHHHHHTTCBCCCCCGGGEEECTT-----SCEEECCCTTCBCCCCTTC-----CBCCCCSCGGGCCHHHHTTCC-----
T ss_pred             HHHHHHhCCeeeccCcccceeecCC-----Cceeccccchhhhcccccc-----cccccCCCCCcCCHHHHcCCC-----
Confidence            9999999999999999999999987     8999999999986543221     112467999999999998765     


Q ss_pred             CCCCcCchhhHHHHHHHHhcCCCCCcccccccccc--ccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHH-HHHHHHhh
Q psy4039         432 VNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE--VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE-LAATVCQL  508 (588)
Q Consensus       432 ~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~--~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~-e~l~~L~~  508 (588)
                       ++.++||||+||++|||++|+.||.+......+.  ....+.++..+|+++++||.+||+.||.+|||+. ++++    
T Consensus       180 -~~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~~~~~p~~~s~~~~dli~~~L~~dP~~R~s~~~~l~~----  254 (320)
T d1xjda_         180 -YNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSIRMDNPFYPRWLEKEAKDLLVKLFVREPEKRLGVRGDIRQ----  254 (320)
T ss_dssp             -BCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHSCSSGGGSBTTBSCGGG----
T ss_pred             -CCchhhhhhhhHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCccCCHHHHHHHHHhcccCCCCCcCHHHHHHh----
Confidence             5578999999999999999999998753322221  2234567788999999999999999999999995 7777    


Q ss_pred             hhhcCCccccC
Q psy4039         509 YLWAPKHWLYG  519 (588)
Q Consensus       509 ~~~~~h~w~~~  519 (588)
                           |||++.
T Consensus       255 -----hpff~~  260 (320)
T d1xjda_         255 -----HPLFRE  260 (320)
T ss_dssp             -----SGGGTT
T ss_pred             -----Cchhcc
Confidence                 999964

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.7e-51  Score=413.64  Aligned_cols=259  Identities=20%  Similarity=0.262  Sum_probs=206.4

Q ss_pred             CCCccccccCCeEEeeeecccCceeEEEEEEC-CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhh
Q psy4039         187 LPDVDDVKVDDIQIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSV  265 (588)
Q Consensus       187 ~~~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l  265 (588)
                      ..+.|+++.++|++++.||+|+||.||+|+++ +..||||++.....                  ..+.+.+|+.+|+.+
T Consensus         8 ~~~~~~i~~~~~~i~~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~~~------------------~~~~~~~E~~~l~~l   69 (285)
T d1fmka3           8 AKDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM------------------SPEAFLQEAQVMKKL   69 (285)
T ss_dssp             STTCSBCCGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSS------------------CHHHHHHHHHHHHHC
T ss_pred             CCcceEcCHHHEEEeeEEeeCCCeEEEEEEECCCCEEEEEEECcccC------------------CHHHHHHHHHHHHhc
Confidence            46788999999999999999999999999997 56899999953221                  224567899999998


Q ss_pred             cCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh-cCCCCHHHHH
Q psy4039         266 ENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER-CAQLSMHERV  343 (588)
Q Consensus       266 ~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~-~~~l~~~~~~  343 (588)
                          +|||||+++++|.+.                             .+++||||+ +|+|..++... ...+++.++.
T Consensus        70 ----~h~nIv~~~g~~~~~-----------------------------~~~lv~Ey~~~g~l~~~~~~~~~~~l~~~~~~  116 (285)
T d1fmka3          70 ----RHEKLVQLYAVVSEE-----------------------------PIYIVTEYMSKGSLLDFLKGETGKYLRLPQLV  116 (285)
T ss_dssp             ----CCTTBCCEEEEECSS-----------------------------SCEEEECCCTTCBHHHHHSHHHHTTCCHHHHH
T ss_pred             ----ccCCEeEEEEEEecC-----------------------------CeEEEEEecCCCchhhhhhhcccccchHHHHH
Confidence                999999999998642                             278999999 68999988754 3479999999


Q ss_pred             HHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHh
Q psy4039         344 LLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVAL  423 (588)
Q Consensus       344 ~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~  423 (588)
                      .++.||+.||.|||+++|+||||||+||||+.+     +.+||+|||+|+........    ......||+.|+|||++.
T Consensus       117 ~i~~~i~~gl~~LH~~~ivH~DlKp~NIll~~~-----~~~kl~DfGla~~~~~~~~~----~~~~~~gt~~y~aPE~~~  187 (285)
T d1fmka3         117 DMAAQIASGMAYVERMNYVHRDLRAANILVGEN-----LVCKVADFGLARLIEDNEYT----ARQGAKFPIKWTAPEAAL  187 (285)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGG-----GCEEECCCCTTC------------------CCGGGSCHHHHH
T ss_pred             HHHHHHHHHHHHHhhhheecccccceEEEECCC-----CcEEEcccchhhhccCCCce----eeccccccccccChHHHh
Confidence            999999999999999999999999999999988     89999999999876543221    112457999999999998


Q ss_pred             cCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccc----cccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCH
Q psy4039         424 ATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNT----DYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSA  499 (588)
Q Consensus       424 ~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~----~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~  499 (588)
                      ...      ++.++|||||||++|||++|..||.......    .+.....++.+..+|++++++|.+||+.||++|||+
T Consensus       188 ~~~------~~~ksDI~S~Giil~el~t~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~  261 (285)
T d1fmka3         188 YGR------FTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTF  261 (285)
T ss_dssp             HCC------CCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             CCC------CCcHHhhhcchHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCCCCcccCHHHHHHHHHHcccCHhHCcCH
Confidence            765      4578999999999999999766654422111    112233456778899999999999999999999999


Q ss_pred             HHHHHHHhhhhh
Q psy4039         500 ELAATVCQLYLW  511 (588)
Q Consensus       500 ~e~l~~L~~~~~  511 (588)
                      +++++.|+.++.
T Consensus       262 ~~i~~~L~~~~~  273 (285)
T d1fmka3         262 EYLQAFLEDYFT  273 (285)
T ss_dssp             HHHHHHHHTTTS
T ss_pred             HHHHHHHhhhhc
Confidence            999887765443

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-51  Score=427.58  Aligned_cols=253  Identities=22%  Similarity=0.327  Sum_probs=202.9

Q ss_pred             cCCeEEee-eecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCC
Q psy4039         195 VDDIQIGK-FIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPH  271 (588)
Q Consensus       195 ~~~~~~~~-~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~H  271 (588)
                      +++|.+.+ .||+|+||+||+|++.  ++.||||++++                      ...+.+|+.++.++   .+|
T Consensus        10 ~~~y~i~~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~----------------------~~~~~~E~~~~~~~---~~h   64 (335)
T d2ozaa1          10 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD----------------------CPKARREVELHWRA---SQC   64 (335)
T ss_dssp             GGTEEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEC----------------------SHHHHHHHHHHHHH---TTS
T ss_pred             ccCEEEeeEEeeeccCeEEEEEEECCCCCEEEEEEECC----------------------cHHHHHHHHHHHHh---cCC
Confidence            58899865 6999999999999986  78999999852                      22345688887665   589


Q ss_pred             CceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc-CCCCHHHHHHHHHHH
Q psy4039         272 PNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC-AQLSMHERVLLFTQL  349 (588)
Q Consensus       272 pNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~-~~l~~~~~~~i~~ql  349 (588)
                      ||||+++++|++..                        .....+|+||||| +|+|.++|..++ ..+++.+++.|+.||
T Consensus        65 pnIv~l~~~~~~~~------------------------~~~~~~~ivmEy~~gg~L~~~i~~~~~~~l~e~~~~~i~~qi  120 (335)
T d2ozaa1          65 PHIVRIVDVYENLY------------------------AGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSI  120 (335)
T ss_dssp             TTBCCEEEEEEEEE------------------------TTEEEEEEEEECCCSEEHHHHHHSCSCCCEEHHHHHHHHHHH
T ss_pred             CCCCeEEEEEeecc------------------------cCCCEEEEEEECCCCCcHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence            99999999997621                        2234699999999 579999998753 469999999999999


Q ss_pred             HHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCc
Q psy4039         350 LEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLF  429 (588)
Q Consensus       350 ~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~  429 (588)
                      +.||.|||++||+||||||+|||++.+...  +.+||+|||+|+........      ...+||+.|||||++.+..   
T Consensus       121 ~~al~ylH~~~iiHRDiKp~NIll~~~~~~--~~~Kl~DFG~a~~~~~~~~~------~~~~gt~~y~aPE~~~~~~---  189 (335)
T d2ozaa1         121 GEAIQYLHSINIAHRDVKPENLLYTSKRPN--AILKLTDFGFAKETTSHNSL------TTPCYTPYYVAPEVLGPEK---  189 (335)
T ss_dssp             HHHHHHHHHTTEECCCCSGGGEEESCSSTT--CCEEECCCTTCEECCCCCCC------CCCSCCCSSCCCCCCCGGG---
T ss_pred             HHHHHHHHHcCCcccccccccccccccccc--ccccccccceeeeccCCCcc------ccccCCcccCCcHHHcCCC---
Confidence            999999999999999999999999865221  68999999999876543221      2467999999999987654   


Q ss_pred             cCCCCCcCchhhHHHHHHHHhcCCCCCccccccccc----cc--cccCCCC----CCccHHHHHHHHHhhhhCCCCCCCH
Q psy4039         430 SFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY----EV--NALPQLN----TNVPEVMRRLVAKLLENDPSDRPSA  499 (588)
Q Consensus       430 ~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~----~~--~~~~~~~----~~~~~~l~~Li~~~L~~dP~~Rps~  499 (588)
                         ++.++|||||||++|||+||++||.+.......    ..  .....++    ..+|+++++||.+||+.||++|||+
T Consensus       190 ---y~~~~DiwSlGvily~lltg~~Pf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~  266 (335)
T d2ozaa1         190 ---YDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTI  266 (335)
T ss_dssp             ---GSHHHHHHHHHHHHHHHTTSSCSCEETTCC--------CCCSCSSSCCTTHHHHSCHHHHHHHHHHSCSSTTTSCCH
T ss_pred             ---CCHHHHHHhhchhHHHHhhCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHHHccCChhHCcCH
Confidence               457899999999999999999999774322111    00  1111122    3578999999999999999999999


Q ss_pred             HHHHHHHhhhhhcCCccccC
Q psy4039         500 ELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       500 ~e~l~~L~~~~~~~h~w~~~  519 (588)
                      +|+++         |||+..
T Consensus       267 ~eil~---------hp~~~~  277 (335)
T d2ozaa1         267 TEFMN---------HPWIMQ  277 (335)
T ss_dssp             HHHHH---------SHHHHT
T ss_pred             HHHHc---------CHHhhC
Confidence            99999         999974

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-51  Score=421.69  Aligned_cols=251  Identities=21%  Similarity=0.280  Sum_probs=207.2

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      .++|++++.||+|+||+||+|.+.  ++.||||+++...   .               ....+.+|+.+|+.+    +||
T Consensus         4 ~~rY~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~---~---------------~~~~~~~Ei~il~~l----~Hp   61 (321)
T d1tkia_           4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG---T---------------DQVLVKKEISILNIA----RHR   61 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT---H---------------HHHHHHHHHHHHHHS----CCT
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEcCCc---c---------------cHHHHHHHHHHHHhC----CCC
Confidence            388999999999999999999997  8899999995421   0               112356799999987    999


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLE  351 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~  351 (588)
                      |||+++++|.+..                            .+|+||||| +|+|.+++...+..+++.+++.++.||++
T Consensus        62 nIv~~~~~~~~~~----------------------------~~~lvmE~~~gg~L~~~i~~~~~~l~e~~~~~i~~qi~~  113 (321)
T d1tkia_          62 NILHLHESFESME----------------------------ELVMIFEFISGLDIFERINTSAFELNEREIVSYVHQVCE  113 (321)
T ss_dssp             TBCCEEEEEEETT----------------------------EEEEEECCCCCCBHHHHHTSSSCCCCHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEEECC----------------------------EEEEEEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence            9999999998742                            599999999 57999999876657999999999999999


Q ss_pred             HHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccC
Q psy4039         352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF  431 (588)
Q Consensus       352 gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~  431 (588)
                      ||.|||++||+||||||+|||++.+..   ..+||+|||+++.......      ....+||+.|+|||.+.+..     
T Consensus       114 al~yLH~~~iiHrDlKp~NIll~~~~~---~~ikl~DFG~~~~~~~~~~------~~~~~~t~~y~ape~~~~~~-----  179 (321)
T d1tkia_         114 ALQFLHSHNIGHFDIRPENIIYQTRRS---STIKIIEFGQARQLKPGDN------FRLLFTAPEYYAPEVHQHDV-----  179 (321)
T ss_dssp             HHHHHHHTTEECCCCCGGGEEESSSSC---CCEEECCCTTCEECCTTCE------EEEEESCGGGSCHHHHTTCE-----
T ss_pred             HHHHHHHcCCCcccccccceeecCCCc---eEEEEcccchhhccccCCc------ccccccccccccchhccCCC-----
Confidence            999999999999999999999986532   6899999999987654321      12467999999999997664     


Q ss_pred             CCCCcCchhhHHHHHHHHhcCCCCCcccccccccccc--ccC----CCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHH
Q psy4039         432 VNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYEVN--ALP----QLNTNVPEVMRRLVAKLLENDPSDRPSAELAATV  505 (588)
Q Consensus       432 ~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~~~--~~~----~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~  505 (588)
                       ++.++||||+||++|||++|..||.+......+...  ...    ..+..+|+++++||.+||+.||.+|||++|+++ 
T Consensus       180 -~~~~~DiWSlGvily~ll~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~eil~-  257 (321)
T d1tkia_         180 -VSTATDMWSLGTLVYVLLSGINPFLAETNQQIIENIMNAEYTFDEEAFKEISIEAMDFVDRLLVKERKSRMTASEALQ-  257 (321)
T ss_dssp             -ECHHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH-
T ss_pred             -CCchhhcccHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCChhhccCCCHHHHHHHHHHccCChhHCcCHHHHhc-
Confidence             457899999999999999999999875433222111  111    122468999999999999999999999999999 


Q ss_pred             HhhhhhcCCccccC
Q psy4039         506 CQLYLWAPKHWLYG  519 (588)
Q Consensus       506 L~~~~~~~h~w~~~  519 (588)
                              |||++.
T Consensus       258 --------hp~~~~  263 (321)
T d1tkia_         258 --------HPWLKQ  263 (321)
T ss_dssp             --------SHHHHS
T ss_pred             --------CHhhcc
Confidence                    999973

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-50  Score=411.28  Aligned_cols=254  Identities=22%  Similarity=0.313  Sum_probs=203.3

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      +++|++.+.||+|+||+||+|++.  |+.||||+++.....               ......+.+|+.+|+.+    +||
T Consensus         1 ~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~---------------~~~~~~~~~Ei~il~~l----~Hp   61 (298)
T d1gz8a_           1 MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTET---------------EGVPSTAIREISLLKEL----NHP   61 (298)
T ss_dssp             CTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEC----------------------CCHHHHHHHHHHTTC----CCT
T ss_pred             CCCCEeccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcC---------------hHHHHHHHHHHHHHHhC----CCC
Confidence            479999999999999999999997  889999999532111               01235677899999987    999


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHh-cCCCCHHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRER-CAQLSMHERVLLFTQLLE  351 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~-~~~l~~~~~~~i~~ql~~  351 (588)
                      |||++++++.+..                            .+|+||||+++++.+++... ...+++.++..++.||+.
T Consensus        62 ~Iv~~~~~~~~~~----------------------------~~~iv~e~~~~~~~~~~~~~~~~~l~e~~~~~~~~qil~  113 (298)
T d1gz8a_          62 NIVKLLDVIHTEN----------------------------KLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQ  113 (298)
T ss_dssp             TBCCEEEEEEETT----------------------------EEEEEEECCSEEHHHHHHHTTTTCCCHHHHHHHHHHHHH
T ss_pred             cEEEecccccccc----------------------------ceeEEEeecCCchhhhhhhhcccCCCHHHHHHHHHHHHH
Confidence            9999999998732                            59999999988877777654 457999999999999999


Q ss_pred             HHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccC
Q psy4039         352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF  431 (588)
Q Consensus       352 gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~  431 (588)
                      ||.|||++|||||||||+|||++.+     +.+||+|||+|+........     .....||+.|+|||++.....    
T Consensus       114 ~L~yLH~~~IiHrDiKpeNIl~~~~-----~~~kl~DFG~a~~~~~~~~~-----~~~~~gt~~y~apE~~~~~~~----  179 (298)
T d1gz8a_         114 GLAFCHSHRVLHRDLKPQNLLINTE-----GAIKLADFGLARAFGVPVRT-----YTHEVVTLWYRAPEILLGCKY----  179 (298)
T ss_dssp             HHHHHHHTTCCCSCCCGGGEEECTT-----SCEEECSTTHHHHHCCCSBC-----TTCCBCCCTTCCHHHHTTCSS----
T ss_pred             HHHHhhcCCEEccccCchheeeccc-----CcceeccCCcceeccCCccc-----ceeecccceeeehhhhccccC----
Confidence            9999999999999999999999987     79999999999876543221     124579999999999876542    


Q ss_pred             CCCCcCchhhHHHHHHHHhcCCCCCcccccccc---------------ccc-----cccC-----------CCCCCccHH
Q psy4039         432 VNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD---------------YEV-----NALP-----------QLNTNVPEV  480 (588)
Q Consensus       432 ~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~---------------~~~-----~~~~-----------~~~~~~~~~  480 (588)
                       ++.++||||+||++|||++|+.||.+......               ...     ....           .....++++
T Consensus       180 -~~~~~DiwSlGvily~m~~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  258 (298)
T d1gz8a_         180 -YSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDED  258 (298)
T ss_dssp             -CCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTSCCCCCCCHHHHSTTCCHH
T ss_pred             -CCccccccccchhhhHHhhCCCCCCCCCHHHHHHHHHHhcCCCchhhccccccccccccccccccccchhhhccCCCHH
Confidence             45789999999999999999999965311000               000     0000           012356789


Q ss_pred             HHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccC
Q psy4039         481 MRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       481 l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~  519 (588)
                      +++|+++||+.||.+|||++|+++         ||||+.
T Consensus       259 ~~dll~~mL~~dP~~R~t~~ell~---------H~ff~~  288 (298)
T d1gz8a_         259 GRSLLSQMLHYDPNKRISAKAALA---------HPFFQD  288 (298)
T ss_dssp             HHHHHHHHTCSSTTTSCCHHHHHT---------SGGGTT
T ss_pred             HHHHHHHHccCChhHCcCHHHHhC---------CHhhcc
Confidence            999999999999999999999998         999984

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-50  Score=405.66  Aligned_cols=250  Identities=21%  Similarity=0.236  Sum_probs=204.5

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCC
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPP  270 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~  270 (588)
                      |+++.++|++++.||+|+||.||+|.++|..||||++++..                   ..+.+.+|+++++++    +
T Consensus         2 w~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~vAvK~i~~~~-------------------~~~~~~~E~~~l~~l----~   58 (262)
T d1byga_           2 WALNMKELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIKNDA-------------------TAQAFLAEASVMTQL----R   58 (262)
T ss_dssp             CBCCGGGEEEEEEEEECSSCEEEEEEETTEEEEEEECCCCC---------------------HHHHHTHHHHTTC----C
T ss_pred             CccCHHHeEEeEEEecCCCeEEEEEEECCeEEEEEEECcHH-------------------HHHHHHHHHHHHHhC----C
Confidence            78899999999999999999999999999999999995321                   224567899999887    9


Q ss_pred             CCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc-CCCCHHHHHHHHHH
Q psy4039         271 HPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC-AQLSMHERVLLFTQ  348 (588)
Q Consensus       271 HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~-~~l~~~~~~~i~~q  348 (588)
                      |||||+++++|.+..                           ..+++||||+ +|+|.++|..+. ..+++..++.|+.|
T Consensus        59 HpnIv~~~g~~~~~~---------------------------~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~  111 (262)
T d1byga_          59 HSNLVQLLGVIVEEK---------------------------GGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLD  111 (262)
T ss_dssp             CTTBCCEEEEECCC-----------------------------CCEEEECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             CCCEeeEEEEEEecC---------------------------CcEEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHH
Confidence            999999999886521                           1379999999 689999997652 35999999999999


Q ss_pred             HHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCC
Q psy4039         349 LLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGL  428 (588)
Q Consensus       349 l~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~  428 (588)
                      |+.||.|||+++|+||||||+|||++.+     +.+||+|||+++......        ....+|+.|+|||++.+..  
T Consensus       112 i~~al~ylH~~~ivH~dlkp~Nil~~~~-----~~~kl~dfg~s~~~~~~~--------~~~~~~~~y~aPE~l~~~~--  176 (262)
T d1byga_         112 VCEAMEYLEGNNFVHRDLAARNVLVSED-----NVAKVSDFGLTKEASSTQ--------DTGKLPVKWTAPEALREKK--  176 (262)
T ss_dssp             HHHHHHHHHHTTCCCSCCSGGGEEECTT-----SCEEECCCCC--------------------CCTTTSCHHHHHHCC--
T ss_pred             HHhhccccccCceeccccchHhheecCC-----CCEeecccccceecCCCC--------ccccccccCCChHHHhCCC--
Confidence            9999999999999999999999999988     899999999998654321        1346899999999998765  


Q ss_pred             ccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHH
Q psy4039         429 FSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAAT  504 (588)
Q Consensus       429 ~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~  504 (588)
                          ++.++|||||||++|||+| |++||........   +.....++++..+|+++++||.+||+.||.+|||+.++++
T Consensus       177 ----~t~~sDIwSfG~il~el~t~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~cl~~dP~~Rps~~~l~~  252 (262)
T d1byga_         177 ----FSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLRE  252 (262)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGGHHHHHTTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             ----CChHHHHHhHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHcccCHhHCcCHHHHHH
Confidence                5578999999999999998 6888876432221   2234567788899999999999999999999999999999


Q ss_pred             HHhhh
Q psy4039         505 VCQLY  509 (588)
Q Consensus       505 ~L~~~  509 (588)
                      .|+..
T Consensus       253 ~L~~i  257 (262)
T d1byga_         253 QLEHI  257 (262)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87743

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.3e-50  Score=410.21  Aligned_cols=259  Identities=25%  Similarity=0.305  Sum_probs=203.1

Q ss_pred             CCeEEeeeecccCceeEEEEEEC---CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR---GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~---g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      ++|++.+.||+|+||+||+|++.   ++.||||+++......               .....+.+|+.+|+.+.. .+||
T Consensus         7 ~~Y~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~---------------~~~~~~~~E~~~l~~l~~-~~Hp   70 (305)
T d1blxa_           7 QQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEE---------------GMPLSTIREVAVLRHLET-FEHP   70 (305)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTT---------------SCBCTHHHHHHHHHHHHH-TCCT
T ss_pred             CCEEEEEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccc---------------hHHHHHHHHHHHHHHHhh-cCCC
Confidence            78999999999999999999985   5679999996432211               123345578888876632 2799


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHH-HhcCCCCHHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLR-ERCAQLSMHERVLLFTQLLE  351 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~-~~~~~l~~~~~~~i~~ql~~  351 (588)
                      |||+++++|....                       ......++++||++++.+..+.. .....+++..++.++.|++.
T Consensus        71 nIv~~~~~~~~~~-----------------------~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~  127 (305)
T d1blxa_          71 NVVRLFDVCTVSR-----------------------TDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLR  127 (305)
T ss_dssp             TBCCEEEEEEEEE-----------------------CSSEEEEEEEEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHH
T ss_pred             Ccceeeeeecccc-----------------------cccCceEEEEEEeccCCchhhhhhccCCCCCHHHHHHHHHHHHH
Confidence            9999999987531                       12234699999999765554444 33457999999999999999


Q ss_pred             HHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccC
Q psy4039         352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF  431 (588)
Q Consensus       352 gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~  431 (588)
                      ||+|||+++|+||||||+|||++.+     +.+||+|||+++......      .....+||+.|||||++.+.+     
T Consensus       128 aL~yLH~~~ivHrDiKp~NILi~~~-----~~~kl~dfg~~~~~~~~~------~~~~~~gT~~Y~APE~~~~~~-----  191 (305)
T d1blxa_         128 GLDFLHSHRVVHRDLKPQNILVTSS-----GQIKLADFGLARIYSFQM------ALTSVVVTLWYRAPEVLLQSS-----  191 (305)
T ss_dssp             HHHHHHHTTCCCCCCCGGGEEECTT-----CCEEECSCCSCCCCCGGG------GGCCCCCCCTTCCHHHHTTCC-----
T ss_pred             HHHHHHhCCEEecCCCccEEEEcCC-----CCeeecchhhhhhhcccc------cCCCcccChhhcCcchhcCCC-----
Confidence            9999999999999999999999988     899999999987654321      122567999999999998765     


Q ss_pred             CCCCcCchhhHHHHHHHHhcCCCCCccccccc---------------c--------------ccccccCCCCCCccHHHH
Q psy4039         432 VNYSKSDAWTAGTVAYEIFGHDNPFYQSARNT---------------D--------------YEVNALPQLNTNVPEVMR  482 (588)
Q Consensus       432 ~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~---------------~--------------~~~~~~~~~~~~~~~~l~  482 (588)
                       ++.++||||+||++|||++|++||.+.....               .              ......+.++..++++++
T Consensus       192 -y~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  270 (305)
T d1blxa_         192 -YATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGK  270 (305)
T ss_dssp             -CCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHH
T ss_pred             -CChhehhhchHHHHHHHHHCCCCCCCCCHHHHHHHHHHhhCCCchhcccccccchhhhhccccccchhhccccCCHHHH
Confidence             5678999999999999999999997631100               0              000111234467889999


Q ss_pred             HHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccC
Q psy4039         483 RLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       483 ~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~  519 (588)
                      +||.+||+.||++|||++|+++         ||||++
T Consensus       271 dli~~mL~~dP~~R~sa~e~L~---------Hpff~~  298 (305)
T d1blxa_         271 DLLLKCLTFNPAKRISAYSALS---------HPYFQD  298 (305)
T ss_dssp             HHHHHHSCSSTTTSCCHHHHHT---------SGGGTT
T ss_pred             HHHHHHCcCChhHCcCHHHHhc---------ChhhcC
Confidence            9999999999999999999999         999974

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-50  Score=412.51  Aligned_cols=252  Identities=21%  Similarity=0.228  Sum_probs=195.9

Q ss_pred             EeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceEEE
Q psy4039         200 IGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVVVM  277 (588)
Q Consensus       200 ~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV~l  277 (588)
                      ..++||+|+||+||+|+++  |+.||||+++.......            .....+.+.+|+.+|+.+    +|||||++
T Consensus         2 ~l~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~------------~~~~~~~~~~Ei~il~~l----~hpnIv~~   65 (299)
T d1ua2a_           2 KLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEA------------KDGINRTALREIKLLQEL----SHPNIIGL   65 (299)
T ss_dssp             EEEEEEEETTEEEEEEECSSCCSEEEEEEC------------------------CTHHHHHHHHHHHC----CCTTBCCE
T ss_pred             cceEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhh------------hHHHHHHHHHHHHHHHhC----CCCCEeEE
Confidence            4678999999999999986  88999999854221111            111234577899999998    99999999


Q ss_pred             eeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q psy4039         278 HFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTHLN  357 (588)
Q Consensus       278 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~yLH  357 (588)
                      ++++.+..                            .+|+||||+.|.+...+......+++.++..++.||+.||.|||
T Consensus        66 ~~~~~~~~----------------------------~~~ivmE~~~~~~~~~~~~~~~~l~~~~~~~~~~qil~aL~~lH  117 (299)
T d1ua2a_          66 LDAFGHKS----------------------------NISLVFDFMETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLH  117 (299)
T ss_dssp             EEEECCTT----------------------------CCEEEEECCSEEHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHH
T ss_pred             EeeeccCC----------------------------ceeehhhhhcchHHhhhhhcccCCCHHHHHHHHHHHHHHHHHhh
Confidence            99998742                            38999999977666666555558999999999999999999999


Q ss_pred             hCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCCCCcC
Q psy4039         358 MHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKS  437 (588)
Q Consensus       358 ~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ks  437 (588)
                      ++||+||||||+|||++.+     +.+||+|||+|+........     ....+||+.|||||++.+...     ++.++
T Consensus       118 ~~~iiHrDiKp~NIli~~~-----~~~KL~DFG~a~~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~-----~~~~~  182 (299)
T d1ua2a_         118 QHWILHRDLKPNNLLLDEN-----GVLKLADFGLAKSFGSPNRA-----YTHQVVTRWYRAPELLFGARM-----YGVGV  182 (299)
T ss_dssp             HTTCCCCCCCGGGEEECTT-----CCEEECCCGGGSTTTSCCCC-----CCCSCCCCTTCCHHHHTTCSC-----CCHHH
T ss_pred             ccceecccCCcceEEecCC-----CccccccCccccccCCCccc-----ccceecChhhccHHHHccCCC-----CChhh
Confidence            9999999999999999988     89999999999876543221     124679999999999875432     45689


Q ss_pred             chhhHHHHHHHHhcCCCCCccccccccc---------------c----------ccccC-----CCCCCccHHHHHHHHH
Q psy4039         438 DAWTAGTVAYEIFGHDNPFYQSARNTDY---------------E----------VNALP-----QLNTNVPEVMRRLVAK  487 (588)
Q Consensus       438 DVwS~Gvil~ElltG~~Pf~~~~~~~~~---------------~----------~~~~~-----~~~~~~~~~l~~Li~~  487 (588)
                      ||||+||++|||++|.+||.+.......               .          ....+     .....+++++++||.+
T Consensus       183 DiwSlGvil~el~~g~~pf~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~  262 (299)
T d1ua2a_         183 DMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQG  262 (299)
T ss_dssp             HHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHH
T ss_pred             hhhhcchHHHHHHhCcCCCCCCCHHHHHHHHHHhcCCCChhhccchhccchhhhhccCCCCChHHhcccCCHHHHHHHHH
Confidence            9999999999999999999763211100               0          00000     0123568899999999


Q ss_pred             hhhhCCCCCCCHHHHHHHHhhhhhcCCccccC
Q psy4039         488 LLENDPSDRPSAELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       488 ~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~  519 (588)
                      ||+.||++|||++|+++         ||||+.
T Consensus       263 ~L~~dP~~R~sa~e~L~---------Hp~f~~  285 (299)
T d1ua2a_         263 LFLFNPCARITATQALK---------MKYFSN  285 (299)
T ss_dssp             HHCSSTTTSCCHHHHHT---------SGGGTS
T ss_pred             HccCChhhCcCHHHHhC---------CHhhCC
Confidence            99999999999999998         999983

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-50  Score=411.38  Aligned_cols=262  Identities=21%  Similarity=0.238  Sum_probs=201.6

Q ss_pred             CccccccCCeEEeeeecccCceeEEEEEEC-------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHH
Q psy4039         189 DVDDVKVDDIQIGKFIAKGTNAVVYEATFR-------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDML  261 (588)
Q Consensus       189 ~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~i  261 (588)
                      ..|++..++|++++.||+|+||.||+|++.       ++.||||++......                ...+.+.+|+.+
T Consensus         6 ~~wei~~~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~----------------~~~~~~~~e~~~   69 (299)
T d1ywna1           6 SKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATH----------------SEHRALMSELKI   69 (299)
T ss_dssp             HHHBCCGGGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CH----------------HHHHHHHHHHHH
T ss_pred             ccccccHHHEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCc----------------HHHHHHHHHHHH
Confidence            346777799999999999999999999975       468999998531110                012334567777


Q ss_pred             HhhhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc------
Q psy4039         262 MNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC------  334 (588)
Q Consensus       262 l~~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~------  334 (588)
                      +.++   ..|||||.+++++.+..                           ..+++||||| +|+|.++|+...      
T Consensus        70 l~~~---~~h~~iv~~~~~~~~~~---------------------------~~~~iv~E~~~~g~L~~~l~~~~~~~~~~  119 (299)
T d1ywna1          70 LIHI---GHHLNVVNLLGACTKPG---------------------------GPLMVIVEFCKFGNLSTYLRSKRNEFVPY  119 (299)
T ss_dssp             HHHH---CCCTTBCCEEEEECSTT---------------------------SCCEEEEECCTTCBHHHHHHHTGGGBCC-
T ss_pred             HHhh---cCCCeEEEeeeeeccCC---------------------------CeEEEEEEecCCCcHHHHHHhcccccccc
Confidence            7776   57999999999876532                           2389999999 689999997642      


Q ss_pred             ---------CCCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCcccccc
Q psy4039         335 ---------AQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSS  405 (588)
Q Consensus       335 ---------~~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~  405 (588)
                               ..+++.++..++.||++||.|||+++||||||||+|||++.+     +.+||+|||+|+.........   
T Consensus       120 ~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~ivHrDlKp~NILl~~~-----~~~Kl~DFGla~~~~~~~~~~---  191 (299)
T d1ywna1         120 KVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEK-----NVVKICDFGLARDIYKDPDYV---  191 (299)
T ss_dssp             ----------CBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECGG-----GCEEECC------CCSCTTSC---
T ss_pred             ccchhhhhcccCCHHHHHHHHHHHHHHHHHHHhCCCcCCcCCccceeECCC-----CcEEEccCcchhhcccccccc---
Confidence                     248999999999999999999999999999999999999988     899999999998755432211   


Q ss_pred             ccccccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhcC-CCCCccccccc----cccccccCCCCCCccHH
Q psy4039         406 ADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGH-DNPFYQSARNT----DYEVNALPQLNTNVPEV  480 (588)
Q Consensus       406 ~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG-~~Pf~~~~~~~----~~~~~~~~~~~~~~~~~  480 (588)
                      .....+||+.|||||++.+..      ++.++|||||||++|||++| .+||.+.....    .......+..+..+|++
T Consensus       192 ~~~~~~gt~~y~APE~l~~~~------~~~~sDiwS~Gvil~ellt~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (299)
T d1ywna1         192 RKGDARLPLKWMAPETIFDRV------YTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPE  265 (299)
T ss_dssp             CTTSCCCGGGGCCHHHHHHCC------CCHHHHHHHHHHHHHHHHTTSCCSSTTCCCSHHHHHHHHHTCCCCCCTTCCHH
T ss_pred             ccCceeeCccccchhHhhcCC------CCcccceeehHHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCCCCCccCCHH
Confidence            122567999999999998775      45789999999999999987 46776532221    12234456677889999


Q ss_pred             HHHHHHHhhhhCCCCCCCHHHHHHHHhhhh
Q psy4039         481 MRRLVAKLLENDPSDRPSAELAATVCQLYL  510 (588)
Q Consensus       481 l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~  510 (588)
                      ++++|.+||+.||++|||++|+++.|+..+
T Consensus       266 l~~li~~cl~~dP~~Rpt~~eil~~L~~il  295 (299)
T d1ywna1         266 MYQTMLDCWHGEPSQRPTFSELVEHLGNLL  295 (299)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCChhHCcCHHHHHHHHHHHH
Confidence            999999999999999999999999887543

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.3e-50  Score=412.64  Aligned_cols=253  Identities=19%  Similarity=0.206  Sum_probs=203.9

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC--C----eeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR--G----VEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENL  268 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~--g----~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l  268 (588)
                      .++|++.+.||+|+||+||+|.+.  |    ..||||.+.....                ....+.+.+|+.+++.+   
T Consensus         8 ~~dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~----------------~~~~~~~~~E~~~l~~l---   68 (317)
T d1xkka_           8 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATS----------------PKANKEILDEAYVMASV---   68 (317)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC--------------------CTHHHHHHHHHHHHHC---
T ss_pred             HHHCEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccC----------------HHHHHHHHHHHHHHHhC---
Confidence            367999999999999999999986  3    3689998853211                11234577899999998   


Q ss_pred             CCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHH
Q psy4039         269 PPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFT  347 (588)
Q Consensus       269 ~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~  347 (588)
                       +|||||+++++|.+..                             .+++||++ +|+|.+++......+++..+..++.
T Consensus        69 -~HpnIv~l~g~~~~~~-----------------------------~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~  118 (317)
T d1xkka_          69 -DNPHVCRLLGICLTST-----------------------------VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCV  118 (317)
T ss_dssp             -CCTTBCCEEEEEESSS-----------------------------EEEEEECCTTCBHHHHHHHTSSSCCHHHHHHHHH
T ss_pred             -CCCCEeeEEEEEecCC-----------------------------eeEEEEeccCCcccccccccccCCCHHHHHHHHH
Confidence             9999999999998632                             67788887 7899999988777899999999999


Q ss_pred             HHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCC
Q psy4039         348 QLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPG  427 (588)
Q Consensus       348 ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~  427 (588)
                      ||++||.|||+++|+||||||+|||++.+     +.+||+|||+|+..........   .....||+.|||||++.+.. 
T Consensus       119 qi~~gl~yLH~~~iiHrDlKp~NIll~~~-----~~~kl~DFGla~~~~~~~~~~~---~~~~~gt~~y~APE~l~~~~-  189 (317)
T d1xkka_         119 QIAKGMNYLEDRRLVHRDLAARNVLVKTP-----QHVKITDFGLAKLLGAEEKEYH---AEGGKVPIKWMALESILHRI-  189 (317)
T ss_dssp             HHHHHHHHHHHTTCCCSCCCGGGEEEEET-----TEEEECCCSHHHHTTTTCC-----------CCTTTSCHHHHHHCC-
T ss_pred             HHHHHHHHHHHcCcccCcchhhcceeCCC-----CCeEeeccccceeccccccccc---ccccccCccccChHHHhcCC-
Confidence            99999999999999999999999999988     8999999999998655322211   12456899999999998775 


Q ss_pred             CccCCCCCcCchhhHHHHHHHHhc-CCCCCccccccc---cccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHH
Q psy4039         428 LFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNT---DYEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAA  503 (588)
Q Consensus       428 ~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~---~~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l  503 (588)
                           ++.++|||||||++|||+| |.+||.+.....   .......++.+..+|+++.+|+.+||+.||.+|||+.+++
T Consensus       190 -----~~~~sDvwS~Gvil~el~t~g~~p~~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~eil  264 (317)
T d1xkka_         190 -----YTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELI  264 (317)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHTTSCCTTTTSCGGGHHHHHHHTCCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred             -----CChhhhhhhHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCCCCCcccCHHHHHHHHHhCCCChhhCcCHHHHH
Confidence                 4578999999999999998 788887643222   1223445567788999999999999999999999999999


Q ss_pred             HHHhhhh
Q psy4039         504 TVCQLYL  510 (588)
Q Consensus       504 ~~L~~~~  510 (588)
                      +.|+.+.
T Consensus       265 ~~l~~~~  271 (317)
T d1xkka_         265 IEFSKMA  271 (317)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8776554

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=3e-49  Score=401.77  Aligned_cols=254  Identities=22%  Similarity=0.274  Sum_probs=202.7

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC-CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~-g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      +++|++.+.||+|+||+||+|+++ |+.||||++......               ....+.+.+|+.+|+.+    +|||
T Consensus         1 ~~~Y~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~---------------~~~~~~~~~E~~il~~l----~hpn   61 (286)
T d1ob3a_           1 MEKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKED---------------EGIPSTTIREISILKEL----KHSN   61 (286)
T ss_dssp             CCSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGG---------------GCCCHHHHHHHHGGGGC----CCTT
T ss_pred             CCCceeccEEecCCCcEEEEEEeCCCCEEEEEEEehhhcC---------------hHHHHHHHHHHHHHHhC----CCCc
Confidence            479999999999999999999987 789999999542211               11345677899999987    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      ||+++++|.+..                            ..+++||++.+++...+......+++..+..++.||+.||
T Consensus        62 Iv~~~~~~~~~~----------------------------~~~i~~e~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~L  113 (286)
T d1ob3a_          62 IVKLYDVIHTKK----------------------------RLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGI  113 (286)
T ss_dssp             BCCEEEEEECSS----------------------------CEEEEEECCSEEHHHHHHTSTTCCCHHHHHHHHHHHHHHH
T ss_pred             EEeeeeecccCC----------------------------ceeEEEEeehhhhHHHHHhhcCCcchhhhHHHHHHHHHHH
Confidence            999999998742                            3899999998777777766556899999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN  433 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~  433 (588)
                      +|||+++||||||||+|||++.+     +.+||+|||+|.........     .....||+.|+|||.+.+...     +
T Consensus       114 ~~LH~~~IvHrDiKp~NIll~~~-----~~~kl~DfG~a~~~~~~~~~-----~~~~~~~~~y~~pE~~~~~~~-----~  178 (286)
T d1ob3a_         114 AYCHDRRVLHRDLKPQNLLINRE-----GELKIADFGLARAFGIPVRK-----YTHEIVTLWYRAPDVLMGSKK-----Y  178 (286)
T ss_dssp             HHHHHTTCCCSCCCGGGEEECTT-----SCEEECCTTHHHHHCC--------------CCCTTCCHHHHTTCCS-----C
T ss_pred             HHhccCcEEecCCCCceeeEcCC-----CCEEecccccceecccCccc-----cceecccchhhhHHHHhCCCC-----C
Confidence            99999999999999999999988     89999999999876542211     124568999999999976542     4


Q ss_pred             CCcCchhhHHHHHHHHhcCCCCCcccccccc-------------------------------ccccccCCCCCCccHHHH
Q psy4039         434 YSKSDAWTAGTVAYEIFGHDNPFYQSARNTD-------------------------------YEVNALPQLNTNVPEVMR  482 (588)
Q Consensus       434 ~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~l~  482 (588)
                      +.++||||+||++|||++|+.||.+......                               ............++++++
T Consensus       179 ~~~~DiwslGv~l~el~~G~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  258 (286)
T d1ob3a_         179 STTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGI  258 (286)
T ss_dssp             CTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCGGGTCCSCCHHHH
T ss_pred             CcceeehhcCcHHHHHHHCCCCCCCCCHHHHHHHHHHhhCCCChhhccchhhhhhcccccccccCcchhhhcccCCHHHH
Confidence            5789999999999999999999965211000                               000111223456789999


Q ss_pred             HHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccC
Q psy4039         483 RLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       483 ~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~  519 (588)
                      +||.+||+.||++|||++|+++         ||||++
T Consensus       259 dli~~~L~~dP~~R~s~~ell~---------Hp~f~~  286 (286)
T d1ob3a_         259 DLLSKMLKLDPNQRITAKQALE---------HAYFKE  286 (286)
T ss_dssp             HHHHHHTCSSTTTSCCHHHHHT---------SGGGGC
T ss_pred             HHHHHHccCChhHCcCHHHHhc---------CcccCc
Confidence            9999999999999999999998         999963

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-50  Score=405.60  Aligned_cols=255  Identities=18%  Similarity=0.186  Sum_probs=198.6

Q ss_pred             cccCCeEEeeeecccCceeEEEEEEC-----CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcC
Q psy4039         193 VKVDDIQIGKFIAKGTNAVVYEATFR-----GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVEN  267 (588)
Q Consensus       193 i~~~~~~~~~~IG~G~fG~Vy~a~~~-----g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~  267 (588)
                      +..++|++.+.||+|+||.||+|++.     ...||||++.+......              ...+.+.+|+.+|+.+  
T Consensus         5 i~~~d~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~--------------~~~~~~~~Ei~~l~~l--   68 (273)
T d1u46a_           5 IGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQP--------------EAMDDFIREVNAMHSL--   68 (273)
T ss_dssp             CCGGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------C--------------HHHHHHHHHHHHHHHC--
T ss_pred             EchHHeEEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCH--------------HHHHHHHHHHHHHHhC--
Confidence            45588999999999999999999875     24799999854221111              1224577899999998  


Q ss_pred             CCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHH
Q psy4039         268 LPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLF  346 (588)
Q Consensus       268 l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~  346 (588)
                        +|||||+++++|.+.                             .+++||||| +|+|.+++..+...+++..+..++
T Consensus        69 --~H~nIv~~~g~~~~~-----------------------------~~~lv~e~~~~~~l~~~~~~~~~~l~~~~~~~~~  117 (273)
T d1u46a_          69 --DHRNLIRLYGVVLTP-----------------------------PMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYA  117 (273)
T ss_dssp             --CCTTBCCEEEEECSS-----------------------------SCEEEEECCTTCBHHHHHHHHGGGSCHHHHHHHH
T ss_pred             --CCCCEEEEEEEEeec-----------------------------chheeeeeecCcchhhhhhcccCCCCHHHHHHHH
Confidence              999999999999752                             278999999 689999988776689999999999


Q ss_pred             HHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCC
Q psy4039         347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP  426 (588)
Q Consensus       347 ~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~  426 (588)
                      .|++.||.|||+++|+||||||+|||++.+     +.+||+|||+++.........  ......+||+.|+|||++.+..
T Consensus       118 ~qi~~gl~ylH~~~iiHrDikp~NIll~~~-----~~vkl~DfGl~~~~~~~~~~~--~~~~~~~~~~~~~aPE~~~~~~  190 (273)
T d1u46a_         118 VQVAEGMGYLESKRFIHRDLAARNLLLATR-----DLVKIGDFGLMRALPQNDDHY--VMQEHRKVPFAWCAPESLKTRT  190 (273)
T ss_dssp             HHHHHHHHHHHHTTEECSCCCGGGEEEEET-----TEEEECCCTTCEECCC-CCEE--EC-----CCGGGCCHHHHHHCE
T ss_pred             HHHHHHHHHhhhCCEeeeeecHHHhccccc-----cceeeccchhhhhcccCCCcc--eecCccccCcccCCHHHHhCCC
Confidence            999999999999999999999999999988     899999999999865532211  1122456899999999998765


Q ss_pred             CCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc----ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHH
Q psy4039         427 GLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD----YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAEL  501 (588)
Q Consensus       427 ~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~----~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e  501 (588)
                            ++.++|||||||++|||+| |+.||.+......    ......++.+..+|+++++||.+||+.||++|||+++
T Consensus       191 ------~~~~~Di~S~Gvil~emlt~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~e  264 (273)
T d1u46a_         191 ------FSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVA  264 (273)
T ss_dssp             ------EEHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTSCCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             ------CCcchhhhhhHHHHHHHHhCCCCCCCCcCHHHHHHHHHhCCCCCCCcccccHHHHHHHHHHcCCChhHCcCHHH
Confidence                  4467999999999999998 8999976432221    1233445667889999999999999999999999999


Q ss_pred             HHHHHh
Q psy4039         502 AATVCQ  507 (588)
Q Consensus       502 ~l~~L~  507 (588)
                      +.+.|.
T Consensus       265 i~~~L~  270 (273)
T d1u46a_         265 LRDFLL  270 (273)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988765

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=3e-49  Score=400.15  Aligned_cols=255  Identities=17%  Similarity=0.208  Sum_probs=196.0

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||+||+|.+.  |+.||||+++........              ....+.+|+.+++.+    +|||
T Consensus         7 drY~i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~--------------~~~~~~~E~~~l~~~----~hpn   68 (277)
T d1o6ya_           7 DRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPS--------------FYLRFRREAQNAAAL----NHPA   68 (277)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTCHH--------------HHHHHHHHHHHHHTC----CCTT
T ss_pred             ceeEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccCHH--------------HHHHHHHHHHHHHhc----CCCC
Confidence            67999999999999999999987  899999999643221110              223467799999887    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      ||++++++.+..                        ..+..+|+||||+ +++|.+++...+ .+++.+++.++.||++|
T Consensus        69 iv~~~~~~~~~~------------------------~~~~~~~lvmE~~~g~~L~~~~~~~~-~l~~~~~~~i~~qi~~a  123 (277)
T d1o6ya_          69 IVAVYDTGEAET------------------------PAGPLPYIVMEYVDGVTLRDIVHTEG-PMTPKRAIEVIADACQA  123 (277)
T ss_dssp             BCCEEEEEEEEC------------------------SSSEEEEEEEECCCEEEHHHHHHHHC-SCCHHHHHHHHHHHHHH
T ss_pred             CCcccceeeecc------------------------CCCceEEEEEECCCCCEehhhhcccC-CCCHHHHHHHHHHHHHH
Confidence            999999998743                        1223589999999 579999988765 89999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||++||+||||||+|||++.+     +..+|+|||.++........  .......+||+.|||||++.+..      
T Consensus       124 l~~lH~~~iiHrDiKP~NIll~~~-----~~~~l~d~~~~~~~~~~~~~--~~~~~~~~Gt~~Y~aPE~~~~~~------  190 (277)
T d1o6ya_         124 LNFSHQNGIIHRDVKPANIMISAT-----NAVKVMDFGIARAIADSGNS--VTQTAAVIGTAQYLSPEQARGDS------  190 (277)
T ss_dssp             HHHHHHTTEECCCCSGGGEEEETT-----SCEEECCCTTCEECC------------------TTCCHHHHTTCC------
T ss_pred             HHHHHhCCccCccccCcccccCcc-----ccceeehhhhhhhhcccccc--ccccccccCcccccCHHHHcCCC------
Confidence            999999999999999999999988     78999999998765442221  11223568999999999997765      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCccccccccc----ccc--ccCCCCCCccHHHHHHHHHhhhhCCCCCC-CHHHHHHH
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY----EVN--ALPQLNTNVPEVMRRLVAKLLENDPSDRP-SAELAATV  505 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~----~~~--~~~~~~~~~~~~l~~Li~~~L~~dP~~Rp-s~~e~l~~  505 (588)
                      ++.++|||||||++|||+||++||.+.......    ...  .....+..+|++++++|.+||+.||.+|| |+++++..
T Consensus       191 ~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~li~~~L~~dp~~R~~sa~~l~~~  270 (277)
T d1o6ya_         191 VDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRAD  270 (277)
T ss_dssp             CCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHCCCCCGGGTSSSCCHHHHHHHHHHTCSSGGGSCSSHHHHHHH
T ss_pred             CCcceecccchHHHHHHHhCCCCCCCcCHHHHHHHHHhcCCCCCchhccCCCHHHHHHHHHHccCCHhHCHhHHHHHHHH
Confidence            457899999999999999999999864322111    111  11133467899999999999999999999 77776654


Q ss_pred             H
Q psy4039         506 C  506 (588)
Q Consensus       506 L  506 (588)
                      |
T Consensus       271 l  271 (277)
T d1o6ya_         271 L  271 (277)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-49  Score=411.56  Aligned_cols=263  Identities=21%  Similarity=0.246  Sum_probs=204.8

Q ss_pred             CCccccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhh
Q psy4039         188 PDVDDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSV  265 (588)
Q Consensus       188 ~~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l  265 (588)
                      ...|++. ++|++.+.||+|+||+||+|++.  |+.||||+++.....  . .            ..+.+.+|+.+|+.+
T Consensus        11 ~~~~~~~-~~Y~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~--~-~------------~~~~~~~Ei~il~~l   74 (346)
T d1cm8a_          11 KTAWEVR-AVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQS--E-L------------FAKRAYRELRLLKHM   74 (346)
T ss_dssp             SSEECCB-SSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSS--H-H------------HHHHHHHHHHHHHHC
T ss_pred             CceeecC-CcEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEchhhcC--h-H------------HHHHHHHHHHHHHhc
Confidence            3345664 89999999999999999999987  899999999542211  1 0            123456799999997


Q ss_pred             cCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHH
Q psy4039         266 ENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLL  345 (588)
Q Consensus       266 ~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i  345 (588)
                          +|||||+++++|.+...                      ......+|+||||++++|..+++..  .+++..++.+
T Consensus        75 ----~hpniv~l~~~~~~~~~----------------------~~~~~~~~lv~e~~~~~l~~~~~~~--~l~~~~~~~~  126 (346)
T d1cm8a_          75 ----RHENVIGLLDVFTPDET----------------------LDDFTDFYLVMPFMGTDLGKLMKHE--KLGEDRIQFL  126 (346)
T ss_dssp             ----CBTTBCCCSEEECSCSS----------------------TTTCCCCEEEEECCSEEHHHHHHHC--CCCHHHHHHH
T ss_pred             ----CCCCeeEEEEEeccCcc----------------------ccccceEEEEEecccccHHHHHHhc--cccHHHHHHH
Confidence                99999999999987431                      1123358999999988898887655  8999999999


Q ss_pred             HHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcC
Q psy4039         346 FTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALAT  425 (588)
Q Consensus       346 ~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~  425 (588)
                      +.||+.||.|||++||+||||||+|||++.+     +.+||+|||+|+......        ....||+.|+|||++.+.
T Consensus       127 ~~qi~~aL~~LH~~~IiHrDiKp~NIL~~~~-----~~~kl~Dfg~a~~~~~~~--------~~~~~t~~y~aPE~~~~~  193 (346)
T d1cm8a_         127 VYQMLKGLRYIHAAGIIHRDLKPGNLAVNED-----CELKILDFGLARQADSEM--------TGYVVTRWYRAPEVILNW  193 (346)
T ss_dssp             HHHHHHHHHHHHHTTEECCCCCGGGEEECTT-----CCEEECCCTTCEECCSSC--------CSSCSCGGGCCTHHHHTT
T ss_pred             HHHHHHHHHHHHhCCCcccccCcchhhcccc-----cccccccccceeccCCcc--------ccccccccccCHHHHcCC
Confidence            9999999999999999999999999999988     899999999998765422        246799999999999765


Q ss_pred             CCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccc---------------------------------cccccccCC
Q psy4039         426 PGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNT---------------------------------DYEVNALPQ  472 (588)
Q Consensus       426 ~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~---------------------------------~~~~~~~~~  472 (588)
                      ..     ++.++||||+||++|||++|++||.+.....                                 .........
T Consensus       194 ~~-----~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (346)
T d1cm8a_         194 MR-----YTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFAS  268 (346)
T ss_dssp             TC-----CCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTCSCHHHHHHHHHSCCCCCCCGGG
T ss_pred             CC-----CCccchhhcchHHHHHHHHCcCCCCCCChHHHHHHHHhccCCCcHHHHhhhcchhhhhhhccCCcccccchHH
Confidence            42     4578999999999999999999997631110                                 001111223


Q ss_pred             CCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccCCC
Q psy4039         473 LNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGAT  521 (588)
Q Consensus       473 ~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~~  521 (588)
                      ....+++++.+||.+||+.||.+|||++|+++         ||||+...
T Consensus       269 ~~~~~s~~~~dli~~mL~~dP~~R~ta~eiL~---------Hp~f~~~~  308 (346)
T d1cm8a_         269 ILTNASPLAVNLLEKMLVLDAEQRVTAGEALA---------HPYFESLH  308 (346)
T ss_dssp             TCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHH---------SGGGTTTC
T ss_pred             hccCCCHHHHHHHHHHCcCChhHCcCHHHHhc---------ChhhCcCC
Confidence            34567899999999999999999999999999         99998543

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.6e-49  Score=405.50  Aligned_cols=257  Identities=24%  Similarity=0.275  Sum_probs=207.1

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEEC-------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHh
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATFR-------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMN  263 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~  263 (588)
                      +++..++|++.+.||+|+||+||+|+++       ++.||||++....   +. .            ..+.+.+|+.+|+
T Consensus         8 ~e~p~~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~---~~-~------------~~~~~~~E~~il~   71 (301)
T d1lufa_           8 LEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEA---SA-D------------MQADFQREAALMA   71 (301)
T ss_dssp             TBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTC---CH-H------------HHHHHHHHHHHHH
T ss_pred             ccCCHHHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhc---Ch-H------------HHHHHHHHHHHHH
Confidence            4555689999999999999999999986       3689999985321   11 0            2345678999999


Q ss_pred             hhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc--------
Q psy4039         264 SVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC--------  334 (588)
Q Consensus       264 ~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~--------  334 (588)
                      .+    +||||++++++|.+..                            .++++|||+ +|+|.+++....        
T Consensus        72 ~l----~h~niv~~~~~~~~~~----------------------------~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~  119 (301)
T d1lufa_          72 EF----DNPNIVKLLGVCAVGK----------------------------PMCLLFEYMAYGDLNEFLRSMSPHTVCSLS  119 (301)
T ss_dssp             TC----CCTTBCCEEEEECSSS----------------------------SCEEEEECCTTCBHHHHHHHTCC-------
T ss_pred             hc----CCCCcccceeeeccCC----------------------------ceEEEEEecCCCcHHHHHHhcCcccccccc
Confidence            87    9999999999997632                            389999999 689999997532        


Q ss_pred             ---------------CCCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCC
Q psy4039         335 ---------------AQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGL  399 (588)
Q Consensus       335 ---------------~~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~  399 (588)
                                     ..+++.++..|+.|++.||+|||+++||||||||+|||++.+     +.+||+|||+|+......
T Consensus       120 ~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~~~ivHrDlKp~NILld~~-----~~~Kl~DFGls~~~~~~~  194 (301)
T d1lufa_         120 HSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLATRNCLVGEN-----MVVKIADFGLSRNIYSAD  194 (301)
T ss_dssp             ---------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGG-----GCEEECCCSCHHHHTGGG
T ss_pred             ccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhcccCCeEeeEEcccceEECCC-----CcEEEccchhheeccCCc
Confidence                           248999999999999999999999999999999999999988     899999999998754422


Q ss_pred             ccccccccccccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhcCC-CCCccccccc---cccccccCCCCC
Q psy4039         400 SMQYSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHD-NPFYQSARNT---DYEVNALPQLNT  475 (588)
Q Consensus       400 ~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~-~Pf~~~~~~~---~~~~~~~~~~~~  475 (588)
                      ..   ......+||+.|||||++.+..      ++.++|||||||++|||++|. +||.+.....   .......++.+.
T Consensus       195 ~~---~~~~~~~~~~~y~aPE~~~~~~------~t~ksDVwS~Gvvl~ell~~~~~p~~~~~~~e~~~~v~~~~~~~~p~  265 (301)
T d1lufa_         195 YY---KADGNDAIPIRWMPPESIFYNR------YTTESDVWAYGVVLWEIFSYGLQPYYGMAHEEVIYYVRDGNILACPE  265 (301)
T ss_dssp             CB---C----CCBCGGGCCHHHHHHCC------CCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCCCCCT
T ss_pred             cc---cccCCCCcCcCcCCHHHHccCC------CChhhhhccchhhHHHHHccCCCCCCCCCHHHHHHHHHcCCCCCCCc
Confidence            11   1122567999999999998765      557899999999999999985 6776542221   122334566778


Q ss_pred             CccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhh
Q psy4039         476 NVPEVMRRLVAKLLENDPSDRPSAELAATVCQLY  509 (588)
Q Consensus       476 ~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~  509 (588)
                      .+|+++.+||.+||+.||++|||+.|+++.|+.+
T Consensus       266 ~~~~~~~~li~~cl~~~P~~RPt~~ev~~~L~~i  299 (301)
T d1lufa_         266 NCPLELYNLMRLCWSKLPADRPSFCSIHRILQRM  299 (301)
T ss_dssp             TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHT
T ss_pred             cchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHh
Confidence            8999999999999999999999999999988754

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-49  Score=403.08  Aligned_cols=261  Identities=21%  Similarity=0.241  Sum_probs=207.5

Q ss_pred             CCccccccCCeEEeeeecccCceeEEEEEEC---------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhH
Q psy4039         188 PDVDDVKVDDIQIGKFIAKGTNAVVYEATFR---------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNE  258 (588)
Q Consensus       188 ~~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~---------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~E  258 (588)
                      ...|++..++|++++.||+|+||.||+|++.         +..||||++.....   ..             ....+.+|
T Consensus         5 ~~~~~i~~~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~---~~-------------~~~~~~~e   68 (299)
T d1fgka_           5 DPRWELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDAT---EK-------------DLSDLISE   68 (299)
T ss_dssp             CTTTBCCGGGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCC---HH-------------HHHHHHHH
T ss_pred             CCcCcccHHHeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccC---hH-------------HHHHHHHH
Confidence            3458888899999999999999999999875         24799999853221   10             12345567


Q ss_pred             HHHHhhhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc---
Q psy4039         259 DMLMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC---  334 (588)
Q Consensus       259 i~il~~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~---  334 (588)
                      ...+.++   .+|||||+++++|.+..                            .+++||||+ +|+|.++|..+.   
T Consensus        69 ~~~l~~~---~~HpnIv~~~~~~~~~~----------------------------~~~~v~e~~~~g~l~~~i~~~~~~~  117 (299)
T d1fgka_          69 MEMMKMI---GKHKNIINLLGACTQDG----------------------------PLYVIVEYASKGNLREYLQARRPPG  117 (299)
T ss_dssp             HHHHHHH---CCCTTBCCEEEEECSSS----------------------------SCEEEECCCTTCBHHHHHHTTSCC-
T ss_pred             HHHHHHh---cCCCeEEecccccccCC----------------------------eEEEEEEccCCCcHHHHHHhhcCCc
Confidence            7777776   58999999999998632                            389999999 689999997542   


Q ss_pred             ------------CCCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccc
Q psy4039         335 ------------AQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQ  402 (588)
Q Consensus       335 ------------~~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~  402 (588)
                                  ..+++.++..++.||+.||+|||+++||||||||+|||++.+     +.+||+|||+++.........
T Consensus       118 ~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~~~ivHrDiKp~NiLl~~~-----~~~kl~dfg~~~~~~~~~~~~  192 (299)
T d1fgka_         118 LEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTED-----NVMKIADFGLARDIHHIDYYK  192 (299)
T ss_dssp             -----------CCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTT-----CCEEECSTTCCCCGGGCCTTC
T ss_pred             cccccccccCccccCCHHHHHHHHHHHHHHHHHhhhCCEEeeeecccceeecCC-----CCeEeccchhhcccccccccc
Confidence                        358999999999999999999999999999999999999988     899999999998765533221


Q ss_pred             cccccccccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCcccccccc---ccccccCCCCCCcc
Q psy4039         403 YSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNTD---YEVNALPQLNTNVP  478 (588)
Q Consensus       403 ~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~~---~~~~~~~~~~~~~~  478 (588)
                         .....+||+.|+|||++.+..      ++.++|||||||++|||++ |.+||.+......   +.....++.+..+|
T Consensus       193 ---~~~~~~~~~~y~aPE~l~~~~------y~~k~DiwS~Gvvl~ell~~g~~p~~~~~~~~~~~~i~~~~~~~~p~~~~  263 (299)
T d1fgka_         193 ---KTTNGRLPVKWMAPEALFDRI------YTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCT  263 (299)
T ss_dssp             ---CCTTSCCGGGGSCHHHHHHCC------CCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCCCCCCSSCC
T ss_pred             ---ccccCCCChhhhhhhHhcCCC------CCchhhhHHhHHHHHHhccCCCCCCCCCCHHHHHHHHHcCCCCCCCccch
Confidence               223567999999999998765      5678999999999999998 6888876432222   22345566778899


Q ss_pred             HHHHHHHHHhhhhCCCCCCCHHHHHHHHhhh
Q psy4039         479 EVMRRLVAKLLENDPSDRPSAELAATVCQLY  509 (588)
Q Consensus       479 ~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~  509 (588)
                      +++++||.+||+.||.+|||++|+++.|+..
T Consensus       264 ~~l~~li~~cl~~dP~~Rps~~eil~~L~~i  294 (299)
T d1fgka_         264 NELYMMMRDCWHAVPSQRPTFKQLVEDLDRI  294 (299)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCHhHCcCHHHHHHHHHHH
Confidence            9999999999999999999999999988754

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-48  Score=406.80  Aligned_cols=253  Identities=23%  Similarity=0.278  Sum_probs=200.2

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      -+|+..++||+|+||+||+|++.  |+.||||++...                     .....+|+.+|+++    +|||
T Consensus        20 ~~Y~~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~---------------------~~~~~~Ei~il~~l----~h~n   74 (350)
T d1q5ka_          20 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQD---------------------KRFKNRELQIMRKL----DHCN   74 (350)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC---------------------SSSCCHHHHHHHHC----CCTT
T ss_pred             CCcEeeeEEeeCcCeEEEEEEECCCCCEEEEEEECcc---------------------chHHHHHHHHHHhc----CCCC
Confidence            36999999999999999999997  889999999532                     22345799999997    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHH---hcCCCCHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRE---RCAQLSMHERVLLFTQLL  350 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~---~~~~l~~~~~~~i~~ql~  350 (588)
                      ||+++++|....                      ......++++|||||++++.+.+..   ....+++.++..++.||+
T Consensus        75 iv~~~~~~~~~~----------------------~~~~~~~~~lv~Ey~~~~~~~~l~~~~~~~~~l~~~~~~~i~~qil  132 (350)
T d1q5ka_          75 IVRLRYFFYSSG----------------------EKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLF  132 (350)
T ss_dssp             BCCEEEEEEEC------------------------CCSCCEEEEEEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             CCcEEEEEEecC----------------------ccCCceEEEEEEeccCCccHHHHHhhhhccCCCCHHHHHHHHHHHH
Confidence            999999997632                      1122346899999998776666543   234799999999999999


Q ss_pred             HHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCcc
Q psy4039         351 EGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFS  430 (588)
Q Consensus       351 ~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~  430 (588)
                      .||+|||++||+||||||+|||++.+.    ..+||+|||+|+........      ...+||+.|+|||.+.+...   
T Consensus       133 ~aL~yLH~~~IiHrDiKp~NILl~~~~----~~~kl~DFG~a~~~~~~~~~------~~~~gt~~y~aPE~~~~~~~---  199 (350)
T d1q5ka_         133 RSLAYIHSFGICHRDIKPQNLLLDPDT----AVLKLCDFGSAKQLVRGEPN------VSYICSRYYRAPELIFGATD---  199 (350)
T ss_dssp             HHHHHHHTTTEECCCCCGGGEEECTTT----CCEEECCCTTCEECCTTSCC------CSCCSCTTSCCHHHHTTCSS---
T ss_pred             HHHHHHHhcCCcccCCCcceEEEecCC----CceeEecccchhhccCCccc------ccccccccccChHHhhcccC---
Confidence            999999999999999999999998762    47999999999876543221      24679999999999876432   


Q ss_pred             CCCCCcCchhhHHHHHHHHhcCCCCCcccccccc----------------------cccccc---------CCCCCCccH
Q psy4039         431 FVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD----------------------YEVNAL---------PQLNTNVPE  479 (588)
Q Consensus       431 ~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~----------------------~~~~~~---------~~~~~~~~~  479 (588)
                        ++.++||||+||++|||++|++||........                      +.....         ......+++
T Consensus       200 --~~~~~DIwSlG~il~el~~g~~pf~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  277 (350)
T d1q5ka_         200 --YTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPP  277 (350)
T ss_dssp             --CCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCC---CCCCCCCCCCCGGGTSCTTSCH
T ss_pred             --CCcceeecccceEEEehhhCCCCCCCCCHHHHHHHHHHHhCCChHHhhhhhccchhhccccccccCchhhhcccCCCH
Confidence              56789999999999999999999965321100                      000000         012345789


Q ss_pred             HHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccC
Q psy4039         480 VMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       480 ~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~  519 (588)
                      ++.+||.+||+.||++|||++|+++         ||||++
T Consensus       278 ~~~dLl~~mL~~dP~~R~ta~e~L~---------Hp~f~~  308 (350)
T d1q5ka_         278 EAIALCSRLLEYTPTARLTPLEACA---------HSFFDE  308 (350)
T ss_dssp             HHHHHHHHHSCSSGGGSCCHHHHHT---------SGGGGG
T ss_pred             HHHHHHHHHccCChhHCcCHHHHhc---------CHhhcc
Confidence            9999999999999999999999998         999973

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.7e-49  Score=402.60  Aligned_cols=266  Identities=21%  Similarity=0.246  Sum_probs=215.1

Q ss_pred             CCccccccCCeEEeeeecccCceeEEEEEEC-------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHH
Q psy4039         188 PDVDDVKVDDIQIGKFIAKGTNAVVYEATFR-------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDM  260 (588)
Q Consensus       188 ~~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~  260 (588)
                      ++.|+++.++|++++.||+|+||+||+|.+.       +..||||+++...   ...             ....+.+|+.
T Consensus        12 ~~~~ei~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~---~~~-------------~~~~~~~E~~   75 (308)
T d1p4oa_          12 PDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAA---SMR-------------ERIEFLNEAS   75 (308)
T ss_dssp             CCTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTS---CHH-------------HHHHHHHHHH
T ss_pred             ccceeecHHHeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECccc---ChH-------------HHHHHHHHHH
Confidence            5779999999999999999999999999985       4689999985321   110             1234667999


Q ss_pred             HHhhhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc-----
Q psy4039         261 LMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC-----  334 (588)
Q Consensus       261 il~~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~-----  334 (588)
                      +++++    +|||||+++++|....                            ..++||||+ +|+|.+++....     
T Consensus        76 il~~l----~h~nIv~~~~~~~~~~----------------------------~~~lv~e~~~~g~l~~~~~~~~~~~~~  123 (308)
T d1p4oa_          76 VMKEF----NCHHVVRLLGVVSQGQ----------------------------PTLVIMELMTRGDLKSYLRSLRPAMAN  123 (308)
T ss_dssp             HGGGC----CCTTBCCEEEEECSSS----------------------------SCEEEEECCTTCBHHHHHHHHHHHHHH
T ss_pred             HHHHc----CCCCEeeeeeEEecCC----------------------------ceeEEEeecCCCCHHHHHHhccccccc
Confidence            99997    9999999999997632                            389999999 699999997531     


Q ss_pred             ----CCCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccc
Q psy4039         335 ----AQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIEL  410 (588)
Q Consensus       335 ----~~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~  410 (588)
                          ..+++..+..++.|+++||.|||+++|+||||||+|||++.+     +++||+|||+|+........   ......
T Consensus       124 ~~~~~~~~~~~~~~i~~~ia~gl~~LH~~~ivHrDlk~~NiLld~~-----~~~Kl~DFGla~~~~~~~~~---~~~~~~  195 (308)
T d1p4oa_         124 NPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAED-----FTVKIGDFGMTRDIYETDYY---RKGGKG  195 (308)
T ss_dssp             CTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCSGGGEEECTT-----CCEEECCTTCCCGGGGGGCE---EGGGSS
T ss_pred             ccccCCCCHHHHHHHHHHHHHHHHHHhhCCeeeceEcCCceeecCC-----ceEEEeecccceeccCCcce---eeccce
Confidence                247999999999999999999999999999999999999988     89999999999876442221   112245


Q ss_pred             cCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhcCC-CCCcccccccc---ccccccCCCCCCccHHHHHHHH
Q psy4039         411 GGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHD-NPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVA  486 (588)
Q Consensus       411 ~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~-~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~  486 (588)
                      .||+.|+|||.+.+..      ++.++|||||||++|||+||. +||.+......   ......++.+..+|+.+.++|.
T Consensus       196 ~~t~~y~aPe~l~~~~------~~~~~Dv~S~G~il~El~t~~~~p~~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~  269 (308)
T d1p4oa_         196 LLPVRWMSPESLKDGV------FTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMR  269 (308)
T ss_dssp             EECGGGCCHHHHHHCC------CCHHHHHHHHHHHHHHHHHTSCCTTTTSCHHHHHHHHHTTCCCCCCTTCCHHHHHHHH
T ss_pred             ecccccCCHHHHccCC------CCcccccccHHHHHHHHHhCCCCCCCCCCHHHHHHHHHhCCCCCCcccchHHHHHHHH
Confidence            6899999999998775      457899999999999999985 67765322221   1223455667889999999999


Q ss_pred             HhhhhCCCCCCCHHHHHHHHhhhhhcCCcccc
Q psy4039         487 KLLENDPSDRPSAELAATVCQLYLWAPKHWLY  518 (588)
Q Consensus       487 ~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~  518 (588)
                      +||+.||++|||++++++.|+..+   +|+++
T Consensus       270 ~cl~~~P~~RPs~~~il~~L~~~~---~~~~~  298 (308)
T d1p4oa_         270 MCWQYNPKMRPSFLEIISSIKEEM---EPGFR  298 (308)
T ss_dssp             HHTCSSGGGSCCHHHHHHHHGGGS---CTTHH
T ss_pred             HHcCCChhHCcCHHHHHHHHHHhc---CCCCc
Confidence            999999999999999999887654   55553

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-48  Score=400.50  Aligned_cols=262  Identities=21%  Similarity=0.253  Sum_probs=212.1

Q ss_pred             CCccccccCCeEEeeeecccCceeEEEEEEC-------CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHH
Q psy4039         188 PDVDDVKVDDIQIGKFIAKGTNAVVYEATFR-------GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDM  260 (588)
Q Consensus       188 ~~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-------g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~  260 (588)
                      ...|++..++|++++.||+|+||.||+|++.       ++.||||++......                .....+.+|+.
T Consensus        15 ~~~~~~~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~----------------~~~~~~~~E~~   78 (311)
T d1t46a_          15 DHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHL----------------TEREALMSELK   78 (311)
T ss_dssp             CGGGBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCH----------------HHHHHHHHHHH
T ss_pred             cccccCCHHHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCH----------------HHHHHHHHHHH
Confidence            4568888899999999999999999999874       568999999542211                12234667999


Q ss_pred             HHhhhcCCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhc-----
Q psy4039         261 LMNSVENLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERC-----  334 (588)
Q Consensus       261 il~~l~~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~-----  334 (588)
                      +++.+   .+|||||+++++|.+..                            .++++|||| +|+|.+++....     
T Consensus        79 ~~~~l---~~HpnIv~~~g~~~~~~----------------------------~~~lvmE~~~~g~l~~~l~~~~~~~~~  127 (311)
T d1t46a_          79 VLSYL---GNHMNIVNLLGACTIGG----------------------------PTLVITEYCCYGDLLNFLRRKRDSFIC  127 (311)
T ss_dssp             HHHHH---CCCTTBCCEEEEECSSS----------------------------SCEEEEECCTTEEHHHHHHHTTTTC--
T ss_pred             HHHhc---cCCCCEEEEEEEEeeCC----------------------------EEEEEEEcCCCCCHHHHHHhccccccc
Confidence            99887   57999999999998632                            389999999 689999997642     


Q ss_pred             ------------CCCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccc
Q psy4039         335 ------------AQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQ  402 (588)
Q Consensus       335 ------------~~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~  402 (588)
                                  ..+++..+..++.||++||.|||+++|+||||||+|||++.+     +.+||+|||+++.........
T Consensus       128 ~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~~~ivHrDLKp~NIl~~~~-----~~~ki~DfG~~~~~~~~~~~~  202 (311)
T d1t46a_         128 SKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHG-----RITKICDFGLARDIKNDSNYV  202 (311)
T ss_dssp             ------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEETT-----TEEEECCCGGGSCTTSCTTSE
T ss_pred             cccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCeeeccccccccccccc-----CcccccccchheeccCCCcce
Confidence                        258999999999999999999999999999999999999988     899999999998765532211


Q ss_pred             cccccccccCCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhc-CCCCCccccccc----cccccccCCCCCCc
Q psy4039         403 YSSADIELGGNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFG-HDNPFYQSARNT----DYEVNALPQLNTNV  477 (588)
Q Consensus       403 ~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~Ellt-G~~Pf~~~~~~~----~~~~~~~~~~~~~~  477 (588)
                         .....+||+.|+|||++.+..      ++.++|||||||++|||+| |.+||.......    .......+..+..+
T Consensus       203 ---~~~~~~gt~~y~aPE~~~~~~------~~~~~DIwS~G~~l~ellt~g~p~~~~~~~~~~~~~~i~~~~~~~~~~~~  273 (311)
T d1t46a_         203 ---VKGNARLPVKWMAPESIFNCV------YTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHA  273 (311)
T ss_dssp             ---ECSSSEECGGGCCHHHHHHCC------CCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHHHHHHHHHTCCCCCCTTS
T ss_pred             ---EeeecccChHHcCHHHhcCCC------CCCcccccchHHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCCCCcccc
Confidence               122467999999999998765      5578999999999999999 555555433222    12234455667789


Q ss_pred             cHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhh
Q psy4039         478 PEVMRRLVAKLLENDPSDRPSAELAATVCQLYL  510 (588)
Q Consensus       478 ~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~  510 (588)
                      |+++.+||.+||+.||.+|||++++++.|+..+
T Consensus       274 ~~~l~~Li~~cl~~dP~~RPs~~~il~~L~~~i  306 (311)
T d1t46a_         274 PAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQI  306 (311)
T ss_dssp             CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhh
Confidence            999999999999999999999999999887543

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-48  Score=399.60  Aligned_cols=262  Identities=21%  Similarity=0.250  Sum_probs=208.2

Q ss_pred             ccccCCeEEeeeecccCceeEEEEEEC--C--eeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcC
Q psy4039         192 DVKVDDIQIGKFIAKGTNAVVYEATFR--G--VEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVEN  267 (588)
Q Consensus       192 ~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g--~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~  267 (588)
                      .++.++|++++.||+|+||+||+|+++  +  ..||||++......                ...+.+.+|+.+|.++  
T Consensus         6 ~i~~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~----------------~~~~~~~~E~~~l~~l--   67 (309)
T d1fvra_           6 VLDWNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASK----------------DDHRDFAGELEVLCKL--   67 (309)
T ss_dssp             BCCGGGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC----------------------CHHHHHHHHHTTC--
T ss_pred             ccCHHHcEEEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccCh----------------HHHHHHHHHHHHHHhc--
Confidence            356799999999999999999999997  3  36888888532211                1234577899999886  


Q ss_pred             CCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHh-------------
Q psy4039         268 LPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRER-------------  333 (588)
Q Consensus       268 l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~-------------  333 (588)
                       .+|||||+++++|.+..                            .+++||||+ +|+|.++|...             
T Consensus        68 -~~HpnIv~~~~~~~~~~----------------------------~~~iV~ey~~~g~L~~~l~~~~~~~~~~~~~~~~  118 (309)
T d1fvra_          68 -GHHPNIINLLGACEHRG----------------------------YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIAN  118 (309)
T ss_dssp             -CCCTTBCCEEEEEEETT----------------------------EEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHT
T ss_pred             -cCCCCEeeEEEEEecCC----------------------------eeEEEEEecCCCcHHHHHhhccccccchhhhccc
Confidence             47999999999998732                            499999999 68999999743             


Q ss_pred             --cCCCCHHHHHHHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCcccccccccccc
Q psy4039         334 --CAQLSMHERVLLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELG  411 (588)
Q Consensus       334 --~~~l~~~~~~~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~  411 (588)
                        ...+++.++..++.||+.||.|||+++|+||||||+|||++.+     +.+||+|||+|+.......      .....
T Consensus       119 ~~~~~l~~~~~~~~~~qia~gl~~lH~~~iiHrDlkp~NIL~~~~-----~~~kl~DfG~a~~~~~~~~------~~~~~  187 (309)
T d1fvra_         119 STASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGEN-----YVAKIADFGLSRGQEVYVK------KTMGR  187 (309)
T ss_dssp             TBSCSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECGG-----GCEEECCTTCEESSCEECC------C----
T ss_pred             cccCCCCHHHHHHHHHHHHHHHHhhhcCCccccccccceEEEcCC-----CceEEcccccccccccccc------cccee
Confidence              2479999999999999999999999999999999999999988     8999999999986543211      12456


Q ss_pred             CCccccchhHHhcCCCCccCCCCCcCchhhHHHHHHHHhcCC-CCCcccccccc---ccccccCCCCCCccHHHHHHHHH
Q psy4039         412 GNVALMAPEVALATPGLFSFVNYSKSDAWTAGTVAYEIFGHD-NPFYQSARNTD---YEVNALPQLNTNVPEVMRRLVAK  487 (588)
Q Consensus       412 GT~~Y~APE~l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~-~Pf~~~~~~~~---~~~~~~~~~~~~~~~~l~~Li~~  487 (588)
                      ||+.|+|||.+.+..      ++.++|||||||++|||++|. +||.+......   ......++.+..+|+++++||.+
T Consensus       188 gt~~y~aPE~l~~~~------~~~~sDvwSfGvil~ell~~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~  261 (309)
T d1fvra_         188 LPVRWMAIESLNYSV------YTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRLEKPLNCDDEVYDLMRQ  261 (309)
T ss_dssp             CCTTTCCHHHHHHCE------ECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHGGGTCCCCCCTTBCHHHHHHHHH
T ss_pred             cCCcccchHHhccCC------CCccceeehhHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCccCCHHHHHHHHH
Confidence            999999999998765      457899999999999999975 56655322211   22334566778899999999999


Q ss_pred             hhhhCCCCCCCHHHHHHHHhhhhhcCCccc
Q psy4039         488 LLENDPSDRPSAELAATVCQLYLWAPKHWL  517 (588)
Q Consensus       488 ~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~  517 (588)
                      ||+.||++|||++++++.|+.++-....++
T Consensus       262 cl~~dP~~RPs~~eil~~L~~i~~~~~~~~  291 (309)
T d1fvra_         262 CWREKPYERPSFAQILVSLNRMLEERKTYV  291 (309)
T ss_dssp             HTCSSGGGSCCHHHHHHHHHHHHHSSSCSB
T ss_pred             HcCCChhHCcCHHHHHHHHHHHHhcCcCCC
Confidence            999999999999999998887654444443

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-48  Score=405.34  Aligned_cols=259  Identities=20%  Similarity=0.258  Sum_probs=200.5

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.+.||+|+||+||+|+++  |+.||||++.+..   .. .            ..+.+.+|+.+|+.+    +|||
T Consensus         8 ~rY~~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~---~~-~------------~~~~~~~Ei~il~~l----~hp~   67 (345)
T d1pmea_           8 PRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFE---HQ-T------------YCQRTLREIKILLRF----RHEN   67 (345)
T ss_dssp             TTEEEEEECC---CCCEEEEEETTTCSEEEEEEECCTT---CH-H------------HHHHHHHHHHHHHHC----CCTT
T ss_pred             CCeEEEEEEeeccCeEEEEEEECCCCcEEEEEEEehhc---Ch-H------------HHHHHHHHHHHHHHc----CCCC
Confidence            67999999999999999999987  8999999995422   11 0            123456799999998    9999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      ||++++++....                       .......+++|++++|+|.+++...  .+++..++.++.||+.||
T Consensus        68 iv~~~~~~~~~~-----------------------~~~~~~~~l~~~~~~g~L~~~l~~~--~l~~~~i~~i~~qil~al  122 (345)
T d1pmea_          68 IIGINDIIRAPT-----------------------IEQMKDVYLVTHLMGADLYKLLKTQ--HLSNDHICYFLYQILRGL  122 (345)
T ss_dssp             BCCCCEEECCSS-----------------------TTTCCCEEEEEECCCEEHHHHHHHC--CCCHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEeecc-----------------------ccccceEEEEEeecCCchhhhhhcC--CCCHHHHHHHHHHHHHHH
Confidence            999999987632                       1122247777777789999999765  899999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCCC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFVN  433 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~  433 (588)
                      +|||++|||||||||+|||++.+     +.+||+|||+|+.........  ......+||+.|+|||++.....     +
T Consensus       123 ~yLH~~~iiHRDIKp~NILl~~~-----~~~kl~DfG~a~~~~~~~~~~--~~~~~~~gt~~y~aPE~l~~~~~-----~  190 (345)
T d1pmea_         123 KYIHSANVLHRDLKPSNLLLNTT-----CDLKICDFGLARVADPDHDHT--GFLTEYVATRWYRAPEIMLNSKG-----Y  190 (345)
T ss_dssp             HHHHHTTEECCCCCGGGEEECTT-----CCEEECCCTTCEECCGGGCBC--CTTCCCCSCGGGCCGGGTTTBCS-----C
T ss_pred             HHHHHCCCcCCCCCcceEEECCC-----CCEEEcccCceeeccCCCccc--eeeccccccceechHHHhhcCCC-----C
Confidence            99999999999999999999987     899999999998754422211  11235679999999999855431     4


Q ss_pred             CCcCchhhHHHHHHHHhcCCCCCccccccccc---------------------------------cccccCCCCCCccHH
Q psy4039         434 YSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY---------------------------------EVNALPQLNTNVPEV  480 (588)
Q Consensus       434 ~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~  480 (588)
                      +.++||||+||++|||++|+.||.+.......                                 ...........++++
T Consensus       191 ~~~~DiwSlG~il~eml~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  270 (345)
T d1pmea_         191 TKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSK  270 (345)
T ss_dssp             STHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHH
T ss_pred             CchhhhhccCceehHHhhCCCCCCCCCHHHHHHHHhhhccCCChhhhhhhhhhhhhcccccCCccCCCCHHHhCCCCCHH
Confidence            57899999999999999999999753110000                                 000001123467889


Q ss_pred             HHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccCC
Q psy4039         481 MRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGA  520 (588)
Q Consensus       481 l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~  520 (588)
                      +++|+.+||+.||.+|||++|+++         |||++..
T Consensus       271 ~~~li~~~L~~dP~~R~ta~e~L~---------hpf~~~~  301 (345)
T d1pmea_         271 ALDLLDKMLTFNPHKRIEVEQALA---------HPYLEQY  301 (345)
T ss_dssp             HHHHHHHHSCSSTTTSCCHHHHHT---------SGGGTTT
T ss_pred             HHHHHHHHccCChhHCcCHHHHhc---------CHhhccC
Confidence            999999999999999999999998         9999844

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-47  Score=395.83  Aligned_cols=266  Identities=20%  Similarity=0.227  Sum_probs=199.4

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      +++|++.+.||+|+||+||+|++.  |+.||||++......               ......+.+|+.+|+.+    +||
T Consensus         9 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~---------------~~~~~~~~~E~~il~~l----~h~   69 (318)
T d3blha1           9 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEK---------------EGFPITALREIKILQLL----KHE   69 (318)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----CT---------------TSSCHHHHHHHHHHHHC----CCT
T ss_pred             cCCEEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcc---------------hHHHHHHHHHHHHHHHh----cCC
Confidence            489999999999999999999986  889999998532211               11334567899999998    999


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      ||+++++++......+                    ......++++||++.+.+..........+++..++.++.|+++|
T Consensus        70 nii~~~~~~~~~~~~~--------------------~~~~~~~~iv~e~~~~~~~~~~~~~~~~~~~~~~~~i~~qil~~  129 (318)
T d3blha1          70 NVVNLIEICRTKASPY--------------------NRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNG  129 (318)
T ss_dssp             TBCCEEEEEEC------------------------------CEEEEEECCCEEHHHHHTCTTCCCCHHHHHHHHHHHHHH
T ss_pred             CccceEeeeecccccc--------------------cccCceEEEEEeccCCCccchhhhcccccccHHHHHHHHHHHHH
Confidence            9999999987643110                    11123599999999766666665555589999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||++||+||||||+|||++.+     +.+||+|||+|+.......... ......+||+.|+|||++.+...     
T Consensus       130 l~~lH~~~ivHrDlKp~NILl~~~-----~~~kl~dfg~~~~~~~~~~~~~-~~~~~~~gT~~Y~aPE~~~~~~~-----  198 (318)
T d3blha1         130 LYYIHRNKILHRDMKAANVLITRD-----GVLKLADFGLARAFSLAKNSQP-NRYTNRVVTLWYRPPELLLGERD-----  198 (318)
T ss_dssp             HHHHHHTTEECCCCCGGGEEECTT-----SCEEECCCTTCEECCC-----C-CCCCSCCSCGGGCCHHHHTTCSS-----
T ss_pred             HHHhccCCEEecCcCchheeecCC-----CcEEeeecceeeeccccccccc-ccccceecCHHHhhHHHHcCCCC-----
Confidence            999999999999999999999988     8999999999987654322111 11224679999999999976532     


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCccccccccc----------cc---------------cccCCCCC---------Ccc
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY----------EV---------------NALPQLNT---------NVP  478 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~----------~~---------------~~~~~~~~---------~~~  478 (588)
                      ++.++||||+||++|||++|+.||.+.......          ..               ........         ..+
T Consensus       199 ~~~k~DiwSlGvil~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (318)
T d3blha1         199 YGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRD  278 (318)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTCCCC-------CCSSCCBCHHHHHHHHHCC
T ss_pred             CCcHHHcccCCceeeeHhhCCCCCCCCCHHHHHHHHHHhcCCCChhhccccchhhhhhhhcccccccccchhhhccccCC
Confidence            557899999999999999999999753111000          00               00000000         125


Q ss_pred             HHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccC
Q psy4039         479 EVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       479 ~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~  519 (588)
                      +++.+||.+||+.||++|||++|+++         ||||+.
T Consensus       279 ~~~~dLl~~mL~~dP~~R~sa~elL~---------Hpff~~  310 (318)
T d3blha1         279 PYALDLIDKLLVLDPAQRIDSDDALN---------HDFFWS  310 (318)
T ss_dssp             HHHHHHHHHHSCSSTTTSCCHHHHHH---------SGGGSS
T ss_pred             HHHHHHHHHHCcCChhHCcCHHHHHc---------Chhhcc
Confidence            67889999999999999999999999         999984

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.4e-48  Score=398.35  Aligned_cols=261  Identities=21%  Similarity=0.374  Sum_probs=211.1

Q ss_pred             cccccCCeEEeeeecccCceeEEEEEEC-----CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhh
Q psy4039         191 DDVKVDDIQIGKFIAKGTNAVVYEATFR-----GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSV  265 (588)
Q Consensus       191 ~~i~~~~~~~~~~IG~G~fG~Vy~a~~~-----g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l  265 (588)
                      ..+.+++|++++.||+|+||+||+|.+.     |+.||||+++......+             ....+.+.+|+.+++++
T Consensus        19 ~~~~l~~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~-------------~~~~~~~~~E~~il~~l   85 (322)
T d1vzoa_          19 EKVGIENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQK-------------AKTTEHTRTERQVLEHI   85 (322)
T ss_dssp             CCCCGGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEE-------------ESSGGGCCCHHHHHHHH
T ss_pred             cccchhceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccc-------------hHHHHHHHHHHHHHHhc
Confidence            3456799999999999999999999873     78999999854221111             11345677899999998


Q ss_pred             cCCCCC-CceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHH
Q psy4039         266 ENLPPH-PNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERV  343 (588)
Q Consensus       266 ~~l~~H-pNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~  343 (588)
                          +| |||+++++++.+..                            .++++|||+ +|+|.+++...+ .+++..+.
T Consensus        86 ----~h~pnIv~~~~~~~~~~----------------------------~~~~v~e~~~~~~L~~~i~~~~-~~~e~~~~  132 (322)
T d1vzoa_          86 ----RQSPFLVTLHYAFQTET----------------------------KLHLILDYINGGELFTHLSQRE-RFTEHEVQ  132 (322)
T ss_dssp             ----HTCTTBCCEEEEEEETT----------------------------EEEEEECCCCSCBHHHHHHHHS-CCCHHHHH
T ss_pred             ----cCCCeEEEeeeeeccCC----------------------------ceeeeeecccccHHHHHHHhcc-cccHHHHH
Confidence                55 89999999998742                            599999999 689999998775 78999999


Q ss_pred             HHHHHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHh
Q psy4039         344 LLFTQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVAL  423 (588)
Q Consensus       344 ~i~~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~  423 (588)
                      .++.||+.||.|||+++|+||||||+|||++.+     +.+||+|||+|+........    ......||+.|+|||.+.
T Consensus       133 ~~~~Qi~~al~~lH~~~ivHrDiKp~Nill~~~-----~~vkL~DFG~a~~~~~~~~~----~~~~~~g~~~~~~pe~~~  203 (322)
T d1vzoa_         133 IYVGEIVLALEHLHKLGIIYRDIKLENILLDSN-----GHVVLTDFGLSKEFVADETE----RAYDFCGTIEYMAPDIVR  203 (322)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTT-----SCEEESCSSEEEECCGGGGG----GGCGGGSCCTTCCHHHHT
T ss_pred             HHHHHHHHHHHHhhcCCEEeccCCccceeecCC-----CCEEEeeccchhhhcccccc----cccccccccccchhHHhh
Confidence            999999999999999999999999999999988     89999999999876442211    122567999999999998


Q ss_pred             cCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccc------cccccCCCCCCccHHHHHHHHHhhhhCCCCCC
Q psy4039         424 ATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY------EVNALPQLNTNVPEVMRRLVAKLLENDPSDRP  497 (588)
Q Consensus       424 ~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~------~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rp  497 (588)
                      +....    ++.++||||+||++|||++|+.||.+.......      .....++++..+|+++.+||.+||+.||++||
T Consensus       204 ~~~~~----~~~ksDIWSlG~iLyelltG~~PF~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~l~~dP~~R~  279 (322)
T d1vzoa_         204 GGDSG----HDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEPPYPQEMSALAKDLIQRLLMKDPKKRL  279 (322)
T ss_dssp             TCC-------CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSGGGST
T ss_pred             cCCcC----CCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcccCCCCCcccCCHHHHHHHHHHcccCHHHcC
Confidence            65532    456899999999999999999999775322211      11234456778999999999999999999999


Q ss_pred             -----CHHHHHHHHhhhhhcCCccccC
Q psy4039         498 -----SAELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       498 -----s~~e~l~~L~~~~~~~h~w~~~  519 (588)
                           |++|+++         ||||++
T Consensus       280 s~~~~t~~eil~---------Hpff~~  297 (322)
T d1vzoa_         280 GCGPRDADEIKE---------HLFFQK  297 (322)
T ss_dssp             TSSTTTHHHHHT---------SGGGTT
T ss_pred             CCCcccHHHHHc---------CHhhcC
Confidence                 4899888         999964

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-47  Score=384.75  Aligned_cols=256  Identities=21%  Similarity=0.254  Sum_probs=202.7

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      +++|++.+.||+|+||+||+|++.  ++.||||+++.......               ....+.+|+.+|+.+    +||
T Consensus         1 ~~ry~~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~---------------~~~~~~~E~~il~~l----~h~   61 (292)
T d1unla_           1 MQKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEG---------------VPSSALREICLLKEL----KHK   61 (292)
T ss_dssp             CCSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTT---------------HHHHHHHHHHHHTTC----CCT
T ss_pred             CCCCEeeeEEecCcCeEEEEEEECCCCcEEEEEEEehhhCChH---------------HHHHHHHHHHHHHhc----CcC
Confidence            378999999999999999999997  78999999964322111               224466799999987    999


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCC-CcHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYN-TDLRNYLRERCAQLSMHERVLLFTQLLE  351 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~-gsL~~~L~~~~~~l~~~~~~~i~~ql~~  351 (588)
                      |||+++++|.+..                            ..+++|+++. ++|..++. ....+++..++.++.|+++
T Consensus        62 niv~~~~~~~~~~----------------------------~~~iv~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~q~~~  112 (292)
T d1unla_          62 NIVRLHDVLHSDK----------------------------KLTLVFEFCDQDLKKYFDS-CNGDLDPEIVKSFLFQLLK  112 (292)
T ss_dssp             TBCCEEEEEECSS----------------------------EEEEEEECCSEEHHHHHHH-TTTCCCHHHHHHHHHHHHH
T ss_pred             CEEeecccccccc----------------------------ceeEEeeeccccccccccc-cccccchhHHHHHHHHHHH
Confidence            9999999998742                            4899999995 45655554 4448999999999999999


Q ss_pred             HHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccC
Q psy4039         352 GVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSF  431 (588)
Q Consensus       352 gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~  431 (588)
                      ||+|||++||+||||||+|||++.+     +.+||+|||.|+.........     ....+++.|+|||++.....    
T Consensus       113 aL~~lH~~~IvHrDiKP~NIli~~~-----~~~kl~DFG~a~~~~~~~~~~-----~~~~~~~~~~~pe~~~~~~~----  178 (292)
T d1unla_         113 GLGFCHSRNVLHRDLKPQNLLINRN-----GELKLANFGLARAFGIPVRCY-----SAEVVTLWYRPPDVLFGAKL----  178 (292)
T ss_dssp             HHHHHHHTTEECCCCSGGGEEECTT-----CCEEECCCTTCEECCSCCSCC-----CSCCSCGGGCCHHHHTTCSC----
T ss_pred             HHHHhhcCCEeeecccCcccccccC-----CceeeeecchhhcccCCCccc-----eeeccccchhhhhHhccCCC----
Confidence            9999999999999999999999987     789999999998865432211     13567899999999876542    


Q ss_pred             CCCCcCchhhHHHHHHHHhcCCCCCccccccc----------------c---------c-------cccccCCCCCCccH
Q psy4039         432 VNYSKSDAWTAGTVAYEIFGHDNPFYQSARNT----------------D---------Y-------EVNALPQLNTNVPE  479 (588)
Q Consensus       432 ~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~----------------~---------~-------~~~~~~~~~~~~~~  479 (588)
                       ++.++||||+||++|||++|+.||.......                .         .       ...........+++
T Consensus       179 -~~~~~DiwSlG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  257 (292)
T d1unla_         179 -YSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNA  257 (292)
T ss_dssp             -CCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCCCTTCCCTTTSTTCCH
T ss_pred             -CCchhhccccchHHHHHhhCCCCCCCCCCHHHHHHHHHhhcCCCChhhhhhhhhcccccccccccccchhhhccccCCH
Confidence             4578999999999999999999975421000                0         0       00111223456788


Q ss_pred             HHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccCCCC
Q psy4039         480 VMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGATP  522 (588)
Q Consensus       480 ~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~~~  522 (588)
                      ++.+||.+||+.||.+|||++|+++         ||||++..|
T Consensus       258 ~~~dll~~mL~~dP~~R~sa~e~L~---------Hp~f~~~~~  291 (292)
T d1unla_         258 TGRDLLQNLLKCNPVQRISAEEALQ---------HPYFSDFCP  291 (292)
T ss_dssp             HHHHHHHHHSCSSGGGSCCHHHHTT---------SGGGSSCSC
T ss_pred             HHHHHHHHHccCChhHCcCHHHHhc---------ChhhcCCCC
Confidence            9999999999999999999999988         999986544

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-47  Score=391.41  Aligned_cols=253  Identities=20%  Similarity=0.259  Sum_probs=202.9

Q ss_pred             EEeeeecccCceeEEEEEEC-----CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         199 QIGKFIAKGTNAVVYEATFR-----GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       199 ~~~~~IG~G~fG~Vy~a~~~-----g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      .+.++||+|+||+||+|++.     ...||||++....   +. .            ..+.+.+|+++|+++    +|||
T Consensus        30 ~~~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~---~~-~------------~~~~~~~E~~~l~~l----~Hpn   89 (311)
T d1r0pa_          30 HFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRIT---DI-G------------EVSQFLTEGIIMKDF----SHPN   89 (311)
T ss_dssp             EEEEEEEEETTEEEEEEEECC----CEEEEEEEECCCC---CH-H------------HHHHHHHHHHHHHTC----CCTT
T ss_pred             ccceEEeecCCeEEEEEEEECCCCEEEEEEEEEECccc---CH-H------------HHHHHHHHHHHHHhC----CCCC
Confidence            34688999999999999985     2369999985321   11 0            224567899999987    8999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      ||++++++.+..                           ...++||||| +|+|.+++......+++..+..++.|+++|
T Consensus        90 Iv~~~g~~~~~~---------------------------~~~~lv~E~~~~g~l~~~~~~~~~~~~~~~~~~i~~qia~g  142 (311)
T d1r0pa_          90 VLSLLGICLRSE---------------------------GSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKG  142 (311)
T ss_dssp             BCCCCEEEEETT---------------------------TEEEEEEECCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHH
T ss_pred             EeEEeEEEEecC---------------------------CceEEEEEEeecCchhhhhccccccchHHHHHHHHHHHHHh
Confidence            999999987531                           1489999999 589999998776678999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||+.+|+||||||+|||++++     +.+||+|||+++......... ........||+.|+|||++....      
T Consensus       143 L~~lH~~~iiHrDLK~~NILl~~~-----~~~kL~DFG~~~~~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~------  210 (311)
T d1r0pa_         143 MKFLASKKFVHRDLAARNCMLDEK-----FTVKVADFGLARDMYDKEFDS-VHNKTGAKLPVKWMALESLQTQK------  210 (311)
T ss_dssp             HHHHHHTTCCCSCCSGGGEEECTT-----CCEEECSSGGGCCTTTTTCCC-TTCTTCSSCCGGGSCHHHHHHCC------
T ss_pred             hhhhcccCcccCCccHHhEeECCC-----CCEEEecccchhhcccccccc-ceecccccccccccChHHHhcCC------
Confidence            999999999999999999999987     899999999998765532221 11222467999999999998765      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCcccccccc----ccccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhh
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD----YEVNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQL  508 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~----~~~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~  508 (588)
                      ++.++||||||+++|||+||..||........    ......+..+..+|+++.+||.+||+.||++|||+.|+++.|+.
T Consensus       211 ~~~ksDI~SfGivl~El~t~~~p~~~~~~~~~~~~~i~~g~~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~L~~  290 (311)
T d1r0pa_         211 FTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISA  290 (311)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTSCCSCC------CHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred             CCChhHhhhhHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCCCCcccCcHHHHHHHHHHcCCCHhHCcCHHHHHHHHHH
Confidence            45789999999999999998888766432221    12234556678899999999999999999999999999998886


Q ss_pred             hh
Q psy4039         509 YL  510 (588)
Q Consensus       509 ~~  510 (588)
                      .+
T Consensus       291 i~  292 (311)
T d1r0pa_         291 IF  292 (311)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=100.00  E-value=6.1e-47  Score=392.10  Aligned_cols=247  Identities=19%  Similarity=0.267  Sum_probs=197.8

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++.++||+|+||+||+|++.  ++.||||+++..                    ..+.+.+|+.+|+.+   ..|||
T Consensus        35 d~y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~--------------------~~~~~~~Ei~il~~l---~~hpn   91 (328)
T d3bqca1          35 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV--------------------KKKKIKREIKILENL---RGGPN   91 (328)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSS--------------------CHHHHHHHHHHHHHH---TTSTT
T ss_pred             cCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEECHH--------------------HHHHHHHHHHHHHhc---cCCCC
Confidence            78999999999999999999997  899999998431                    123456799999988   45999


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCC-CcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYN-TDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~-gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |++++++|....                          ...+++|||||. ++|..+.    ..+++.++..++.||+.|
T Consensus        92 Iv~~~~~~~~~~--------------------------~~~~~~v~e~~~~~~L~~~~----~~l~e~~i~~i~~qil~a  141 (328)
T d3bqca1          92 IITLADIVKDPV--------------------------SRTPALVFEHVNNTDFKQLY----QTLTDYDIRFYMYEILKA  141 (328)
T ss_dssp             BCCEEEEEECTT--------------------------TCSEEEEEECCCSCBGGGTT----TSCCHHHHHHHHHHHHHH
T ss_pred             CcEEEEEEEecC--------------------------CCceeEEEeecCCCcHHHHh----cCCCHHHHHHHHHHHHHH
Confidence            999999987532                          224899999994 6776542    279999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||++||+||||||+|||++.+.    ..+||+|||+|+....+..      ....+||+.|+|||++.+...     
T Consensus       142 L~~LH~~gIvHrDiKp~NILi~~~~----~~vkl~DFG~a~~~~~~~~------~~~~~~t~~y~aPE~~~~~~~-----  206 (328)
T d3bqca1         142 LDYCHSMGIMHRDVKPHNVMIDHEH----RKLRLIDWGLAEFYHPGQE------YNVRVASRYFKGPELLVDYQM-----  206 (328)
T ss_dssp             HHHHHHTTEECCCCSGGGEEEETTT----TEEEECCGGGCEECCTTCC------CCSCCSCGGGCCHHHHTTCCC-----
T ss_pred             HHHHhhcccccccccccceEEcCCC----CeeeecccccceeccCCCc------ccccccCccccCcccccCCCC-----
Confidence            9999999999999999999998652    4689999999987654322      124679999999999876542     


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCccccccc----------------------------cc------------cccccCC
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNT----------------------------DY------------EVNALPQ  472 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~----------------------------~~------------~~~~~~~  472 (588)
                      ++.++||||+||++|||++|+.||.......                            .+            .......
T Consensus       207 ~~~~~DiwslG~~l~e~~~g~~pf~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (328)
T d3bqca1         207 YDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSE  286 (328)
T ss_dssp             CCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCCCGGGGGTCCCCCCCCGGGGCCTT
T ss_pred             CCcccchhhhhhhhHHhccCCCCCCCCchhHHHHHHHHHHHCCchhhhhhhhcccccCcccchhcccccccchhhccccc
Confidence            4578999999999999999999996521100                            00            0001111


Q ss_pred             CCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccC
Q psy4039         473 LNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       473 ~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~  519 (588)
                      ....+++++++||++||+.||.+|||++|+++         ||||+.
T Consensus       287 ~~~~~s~~~~dli~~mL~~dP~~R~ta~e~L~---------Hp~F~~  324 (328)
T d3bqca1         287 NQHLVSPEALDFLDKLLRYDHQSRLTAREAME---------HPYFYT  324 (328)
T ss_dssp             TGGGCCHHHHHHHHHHSCSSGGGSCCHHHHHT---------SGGGTT
T ss_pred             ccccCCHHHHHHHHHHccCChhHCcCHHHHhc---------CcccCC
Confidence            22347889999999999999999999999999         999974

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-47  Score=390.16  Aligned_cols=260  Identities=22%  Similarity=0.243  Sum_probs=193.9

Q ss_pred             CCeEEeeeecccCceeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceE
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVV  275 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV  275 (588)
                      .+|.+.+.||+|+||.||+|++.|+.||||++....    .    +.          .....|+..+..+    +|||||
T Consensus         3 ~~~~l~~~iG~G~fg~Vy~~~~~g~~vAvK~~~~~~----~----~~----------~~~e~ei~~~~~~----~HpnIv   60 (303)
T d1vjya_           3 RTIVLQESIGKGRFGEVWRGKWRGEEVAVKIFSSRE----E----RS----------WFREAEIYQTVML----RHENIL   60 (303)
T ss_dssp             GGEEEEEEEECCSSSEEEEEEETTEEEEEEEECGGG----H----HH----------HHHHHHHHTSTTC----CCTTBC
T ss_pred             cEEEEEEEEeeCCCeEEEEEEECCEEEEEEEECccc----h----hH----------HHHHHHHHHHhhC----CCCcCc
Confidence            678999999999999999999999999999984211    0    00          1112244444444    899999


Q ss_pred             EEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC-CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy4039         276 VMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY-NTDLRNYLRERCAQLSMHERVLLFTQLLEGVT  354 (588)
Q Consensus       276 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~-~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~  354 (588)
                      ++++++.+..                        .....+|+||||+ +|+|.++|+..  .+++.+++.++.|++.||+
T Consensus        61 ~~~~~~~~~~------------------------~~~~~~~lv~Ey~~~g~L~~~l~~~--~l~~~~~~~~~~~ia~gl~  114 (303)
T d1vjya_          61 GFIAADNKDN------------------------GTWTQLWLVSDYHEHGSLFDYLNRY--TVTVEGMIKLALSTASGLA  114 (303)
T ss_dssp             CEEEEEEEEC------------------------SSSEEEEEEEECCTTCBHHHHHHHC--CBCHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEeCC------------------------CcceEEEEEEecccCCCHHHHHhcC--CCCHHHHHHHHHHHHHHHH
Confidence            9999998742                        1123589999999 68999999876  7999999999999999999


Q ss_pred             HHHh--------CCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCC
Q psy4039         355 HLNM--------HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP  426 (588)
Q Consensus       355 yLH~--------~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~  426 (588)
                      |||+        +|||||||||+|||++.+     +.+||+|||+++......... ........||+.|||||++.+..
T Consensus       115 ~lH~~~~~~~~~~~IvHrDlKp~NILl~~~-----~~~Kl~DFGl~~~~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~  188 (303)
T d1vjya_         115 HLHMEIVGTQGKPAIAHRDLKSKNILVKKN-----GTCCIADLGLAVRHDSATDTI-DIAPNHRVGTKRYMAPEVLDDSI  188 (303)
T ss_dssp             HHHCCBCSTTCBCEEECSCCCGGGEEECTT-----SCEEECCCTTCEEEETTTTEE-CC----CCSCGGGCCHHHHTTCS
T ss_pred             HHHHhhhhhccCCCeeccccCccceEEcCC-----CCeEEEecCccccccCCCcce-eccccceecccCcCChhhccccc
Confidence            9996        599999999999999988     899999999998765432211 11223568999999999987653


Q ss_pred             CCccCCCCCcCchhhHHHHHHHHhcCCCCCcccccccc-------------------ccccccCCCCC-----CccHHHH
Q psy4039         427 GLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD-------------------YEVNALPQLNT-----NVPEVMR  482 (588)
Q Consensus       427 ~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~-------------------~~~~~~~~~~~-----~~~~~l~  482 (588)
                      ......++.++|||||||++|||+||..||........                   ......|.++.     ..+..+.
T Consensus       189 ~~~~~~~~~k~Di~S~Gvvl~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~  268 (303)
T d1vjya_         189 NMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMA  268 (303)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGGGGGCHHHHHHH
T ss_pred             cccCCCcCcchhhhhhHHHHHHHhhCCCCCCcccccccchhhcccccchHHHHHHHHhccccCCCCCcccCChHHHHHHH
Confidence            22111134679999999999999999988754211000                   00111222222     2335689


Q ss_pred             HHHHHhhhhCCCCCCCHHHHHHHHhhh
Q psy4039         483 RLVAKLLENDPSDRPSAELAATVCQLY  509 (588)
Q Consensus       483 ~Li~~~L~~dP~~Rps~~e~l~~L~~~  509 (588)
                      +|+.+||+.||.+|||+.|+++.|+.+
T Consensus       269 ~li~~cl~~dp~~Rps~~ei~~~L~~i  295 (303)
T d1vjya_         269 KIMRECWYANGAARLTALRIKKTLSQL  295 (303)
T ss_dssp             HHHHTTCCSSGGGSCCHHHHHHHHHHH
T ss_pred             HHHHHHcccCHhHCcCHHHHHHHHHHH
Confidence            999999999999999999999877643

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.4e-46  Score=384.42  Aligned_cols=253  Identities=16%  Similarity=0.192  Sum_probs=198.1

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++++.||+|+||+||+|++.  |+.||||++....                   ....+.+|+++++.+    +|+|
T Consensus         7 ~rY~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~-------------------~~~~~~~E~~i~~~l----~~~~   63 (299)
T d1ckia_           7 NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT-------------------KHPQLHIESKIYKMM----QGGV   63 (299)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEESCT-------------------TSCCHHHHHHHHHHS----TTST
T ss_pred             CEEEEeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhc-------------------cCHHHHHHHHHHHHc----cCCC
Confidence            46999999999999999999987  8899999985321                   223466799999887    6666


Q ss_pred             eE-EEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         274 VV-VMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       274 IV-~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      +| .+.+++.+.                            ...++||||++++|.+.+......+++..+..++.|++.|
T Consensus        64 ~i~~~~~~~~~~----------------------------~~~~ivme~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~  115 (299)
T d1ckia_          64 GIPTIRWCGAEG----------------------------DYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMISR  115 (299)
T ss_dssp             TCCCEEEEEEET----------------------------TEEEEEEECCCCBHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred             cccEEEEEEecC----------------------------CEEEEEEEEcCCchhhhhhhccCCCcHHHHHHHHHHHHHH
Confidence            55 444444432                            2489999999999998888766689999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccc--cccccccccCCccccchhHHhcCCCCcc
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQ--YSSADIELGGNVALMAPEVALATPGLFS  430 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~--~~~~~~~~~GT~~Y~APE~l~~~~~~~~  430 (588)
                      |+|||++||+||||||+|||++..+.+  ..+||+|||+|+.........  .........||+.|||||++.+.+    
T Consensus       116 l~~lH~~~iiHrDiKp~NIl~~~~~~~--~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~----  189 (299)
T d1ckia_         116 IEYIHSKNFIHRDVKPDNFLMGLGKKG--NLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIE----  189 (299)
T ss_dssp             HHHHHHTTEECSCCCGGGEEECCGGGT--TCEEECCCSSCEECBCTTTCCBCCCCBCCSCCCCSSSCCHHHHTTBC----
T ss_pred             HHHHHHCCeeeccCCHhhccccccCCC--ceeeeeccCcceeccccccccceeccccCCcCCCccccCHHHHhCCC----
Confidence            999999999999999999998754211  579999999999876532211  112233568999999999998765    


Q ss_pred             CCCCCcCchhhHHHHHHHHhcCCCCCcccccccccc----------ccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHH
Q psy4039         431 FVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDYE----------VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAE  500 (588)
Q Consensus       431 ~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~~----------~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~  500 (588)
                        ++.++|||||||++|||++|+.||..........          ....+.....+|+++.++|..||+.||++||+++
T Consensus       190 --~~~~~DiwSlG~~l~el~tg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~li~~cl~~~p~~RP~~~  267 (299)
T d1ckia_         190 --QSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYS  267 (299)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHSSCTTCCCC-------HHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHHSCTTCCCCHH
T ss_pred             --CCChhhEEecCHHHHHHHhCCCcccccchHHHHHHHHHhhcccCCCChhHhccCCCHHHHHHHHHHccCChhHCcCHH
Confidence              4578999999999999999999997632221111          0111224567999999999999999999999999


Q ss_pred             HHHHHHh
Q psy4039         501 LAATVCQ  507 (588)
Q Consensus       501 e~l~~L~  507 (588)
                      ++.+.|+
T Consensus       268 ~i~~~l~  274 (299)
T d1ckia_         268 YLRQLFR  274 (299)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988887

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.7e-47  Score=395.29  Aligned_cols=261  Identities=20%  Similarity=0.231  Sum_probs=199.4

Q ss_pred             CccccccCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhc
Q psy4039         189 DVDDVKVDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVE  266 (588)
Q Consensus       189 ~~~~i~~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~  266 (588)
                      ..|++. ++|++.+.||+|+||+||+|++.  |+.||||++........               ..+.+.+|+.+|+.+ 
T Consensus        12 ~~~~~~-~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~---------------~~~~~~~Ei~il~~l-   74 (348)
T d2gfsa1          12 TIWEVP-ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSII---------------HAKRTYRELRLLKHM-   74 (348)
T ss_dssp             SEEEEE-TTEEEEEECGGGTTSSEEEEEETTTTEEEEEEECSCTTSSHH---------------HHHHHHHHHHHHHHC-
T ss_pred             ccccCC-CCeEEEEEEecCCCeEEEEEEECCCCCEEEEEEECchhcChH---------------HHHHHHHHHHHHHhc-
Confidence            345554 88999999999999999999986  89999999954221100               123456799999998 


Q ss_pred             CCCCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHH
Q psy4039         267 NLPPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLF  346 (588)
Q Consensus       267 ~l~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~  346 (588)
                         +|||||++++++.....                      .......++++++++|+|.+++..+  .+++.++..++
T Consensus        75 ---~h~~iv~~~~~~~~~~~----------------------~~~~~~~~i~~~~~gg~L~~~~~~~--~l~e~~~~~i~  127 (348)
T d2gfsa1          75 ---KHENVIGLLDVFTPARS----------------------LEEFNDVYLVTHLMGADLNNIVKCQ--KLTDDHVQFLI  127 (348)
T ss_dssp             ---CCTTBCCCSEEECSCSS----------------------TTTCCCCEEEEECCSEEHHHHHTTC--CCCHHHHHHHH
T ss_pred             ---CCCCeeeEEEEEeeccc----------------------cccCceEEEEEeecCCchhhhcccc--cccHHHHHHHH
Confidence               99999999999875321                      1112235555555589999999654  89999999999


Q ss_pred             HHHHHHHHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCC
Q psy4039         347 TQLLEGVTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATP  426 (588)
Q Consensus       347 ~ql~~gL~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~  426 (588)
                      .||+.||.|||++||+||||||+|||++.+     +.+|++|||+|......        .....||+.|+|||++.+..
T Consensus       128 ~qil~aL~~LH~~giiHrDiKp~NILi~~~-----~~~kl~dfg~a~~~~~~--------~~~~~g~~~y~apE~~~~~~  194 (348)
T d2gfsa1         128 YQILRGLKYIHSADIIHRDLKPSNLAVNED-----CELKILDFGLARHTDDE--------MTGYVATRWYRAPEIMLNWM  194 (348)
T ss_dssp             HHHHHHHHHHHHTTCCCCCCCGGGEEECTT-----CCEEECCC----CCTGG--------GSSSCHHHHTSCHHHHTTCS
T ss_pred             HHHHHHHHHHHhCCCcccccCCcccccccc-----ccccccccchhcccCcc--------cccccccccccCchhhcCCc
Confidence            999999999999999999999999999988     89999999999764331        12467999999999987654


Q ss_pred             CCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccc----------------------------cccccC-----CC
Q psy4039         427 GLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY----------------------------EVNALP-----QL  473 (588)
Q Consensus       427 ~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~----------------------------~~~~~~-----~~  473 (588)
                      .     ++.++||||+||++|||++|++||.+.......                            .....+     ..
T Consensus       195 ~-----~~~~~DiwSlGv~l~~ll~g~~pF~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (348)
T d2gfsa1         195 H-----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANV  269 (348)
T ss_dssp             C-----CCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHTTCCCHHHHHHHTTSCCCCCCCHHHH
T ss_pred             c-----CCcccchhhhhHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChHHhhhccchhhhhhhhhcccCCCcchhhh
Confidence            2     457899999999999999999999753110000                            000000     11


Q ss_pred             CCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccCC
Q psy4039         474 NTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGA  520 (588)
Q Consensus       474 ~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~  520 (588)
                      ...+++++++||.+||+.||.+|||++|+++         ||||++.
T Consensus       270 ~~~~s~~~~dli~~mL~~dP~~R~ta~elL~---------Hp~f~~~  307 (348)
T d2gfsa1         270 FIGANPLAVDLLEKMLVLDSDKRITAAQALA---------HAYFAQY  307 (348)
T ss_dssp             STTCCHHHHHHHHHHSCSSGGGSCCHHHHHT---------SGGGTTT
T ss_pred             cCCCCHHHHHHHHHHCcCChhhCcCHHHHhc---------CHhhCCC
Confidence            2467899999999999999999999999999         9999843

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-46  Score=393.87  Aligned_cols=255  Identities=24%  Similarity=0.281  Sum_probs=191.8

Q ss_pred             cCCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCC
Q psy4039         195 VDDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHP  272 (588)
Q Consensus       195 ~~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~Hp  272 (588)
                      +++|++.++||+|+||+||+|.+.  |+.||||++.+......               ....+.+|+.+++.+    +||
T Consensus        16 ~~~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~---------------~~~~~~~Ei~il~~l----~hp   76 (355)
T d2b1pa1          16 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQT---------------HAKRAYRELVLMKCV----NHK   76 (355)
T ss_dssp             ETTEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHH---------------HHHHHHHHHHHHHHC----CCT
T ss_pred             cCCeEEEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhcCHH---------------HHHHHHHHHHHHHhc----CCC
Confidence            378999999999999999999997  89999999964322110               123456799999987    899


Q ss_pred             ceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy4039         273 NVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEG  352 (588)
Q Consensus       273 NIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~g  352 (588)
                      |||+++++|....                      .......+|+|||||.|++.+.+.   ..+++..++.++.||+.|
T Consensus        77 nIv~~~~~f~~~~----------------------~~~~~~~~~iv~Ey~~~~l~~~~~---~~~~~~~i~~~~~qil~g  131 (355)
T d2b1pa1          77 NIISLLNVFTPQK----------------------TLEEFQDVYLVMELMDANLCQVIQ---MELDHERMSYLLYQMLCG  131 (355)
T ss_dssp             TBCCCSEEECSCC----------------------STTTCCEEEEEEECCSEEHHHHHT---SCCCHHHHHHHHHHHHHH
T ss_pred             CeeEEEEEEeccc----------------------ccccCceeEEEEeccchHHHHhhh---cCCCHHHHHHHHHHHHHH
Confidence            9999999997642                      112334699999999888777663   279999999999999999


Q ss_pred             HHHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccccccccccccCCccccchhHHhcCCCCccCC
Q psy4039         353 VTHLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEVALATPGLFSFV  432 (588)
Q Consensus       353 L~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~  432 (588)
                      |.|||++||+||||||+|||++.+     +.+|++|||+++.......      ....+||+.|+|||++.+..      
T Consensus       132 l~~LH~~giiHrDlKP~Nil~~~~-----~~~kl~df~~~~~~~~~~~------~~~~~~t~~y~aPE~l~~~~------  194 (355)
T d2b1pa1         132 IKHLHSAGIIHRDLKPSNIVVKSD-----CTLKILDFGLARTAGTSFM------MTPYVVTRYYRAPEVILGMG------  194 (355)
T ss_dssp             HHHHHHTTCCCSCCCGGGEEECTT-----CCEEECCCCC---------------------CCTTCCHHHHTTCC------
T ss_pred             HHHhhhcccccccCCccccccccc-----cceeeechhhhhccccccc------cccccccccccChhhhcCCC------
Confidence            999999999999999999999988     7899999999887654322      12467999999999998764      


Q ss_pred             CCCcCchhhHHHHHHHHhcCCCCCccccccccc-------------------------cc----------------cccC
Q psy4039         433 NYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY-------------------------EV----------------NALP  471 (588)
Q Consensus       433 ~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~-------------------------~~----------------~~~~  471 (588)
                      ++.++||||+||++|||++|++||.+.......                         ..                ...+
T Consensus       195 ~~~~~DiwSlG~~l~ell~g~~pF~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (355)
T d2b1pa1         195 YKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFP  274 (355)
T ss_dssp             CCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHTTSCHHHHHHHHTSCCCCCCCHHHHSCGGGSC
T ss_pred             CCCCcccccccchHHHHhhCCCCCCCCCHHHHHHHHHHhccCCCHHHHHHhhhhHHHHhhcCcccccccccccccccccc
Confidence            567899999999999999999999652100000                         00                0000


Q ss_pred             C---CCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccC
Q psy4039         472 Q---LNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYG  519 (588)
Q Consensus       472 ~---~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~  519 (588)
                      .   .+...++++.+||++||+.||++|||++|+++         |||++.
T Consensus       275 ~~~~~~~~~s~~~~dll~~mL~~dP~~R~ta~elL~---------Hpw~~~  316 (355)
T d2b1pa1         275 ADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQ---------HPYINV  316 (355)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHT---------STTTGG
T ss_pred             ccccccccCCHHHHHHHHHHCcCChhHCcCHHHHhc---------CcccCC
Confidence            0   01124678999999999999999999999999         999985

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=2.8e-45  Score=374.03  Aligned_cols=259  Identities=17%  Similarity=0.206  Sum_probs=206.3

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCc
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPN  273 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpN  273 (588)
                      ++|++++.||+|+||+||+|++.  |+.||||++....                   ....+.+|+++++.+   ..|+|
T Consensus         5 ~~Y~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~-------------------~~~~~~~e~~~~~~l---~~~~~   62 (293)
T d1csna_           5 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS-------------------DAPQLRDEYRTYKLL---AGCTG   62 (293)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT-------------------TSCCHHHHHHHHHHT---TTCTT
T ss_pred             CceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEcccc-------------------CcHHHHHHHHHHHHh---cCCCC
Confidence            68999999999999999999987  8899999985321                   223456788888877   35689


Q ss_pred             eEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy4039         274 VVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGV  353 (588)
Q Consensus       274 IV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL  353 (588)
                      |+.+++++.+..                            ..++||||++++|.+++......+++.++..++.|++.||
T Consensus        63 i~~~~~~~~~~~----------------------------~~~~vme~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~~l  114 (293)
T d1csna_          63 IPNVYYFGQEGL----------------------------HNVLVIDLLGPSLEDLLDLCGRKFSVKTVAMAAKQMLARV  114 (293)
T ss_dssp             CCCEEEEEEETT----------------------------EEEEEEECCCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEeecCC----------------------------ccEEEEEecCCCHHHHHHhhccchhhHHHHHHHHHHHHHH
Confidence            999998887632                            4899999999999999988766899999999999999999


Q ss_pred             HHHHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCCCCccc--cccccccccCCccccchhHHhcCCCCccC
Q psy4039         354 THLNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKSGLSMQ--YSSADIELGGNVALMAPEVALATPGLFSF  431 (588)
Q Consensus       354 ~yLH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~~~~~~--~~~~~~~~~GT~~Y~APE~l~~~~~~~~~  431 (588)
                      +|||++||+||||||+|||++.+.....+.+||+|||+|+.........  ........+||+.|||||++.+..     
T Consensus       115 ~~lH~~giiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~GT~~y~aPE~~~~~~-----  189 (293)
T d1csna_         115 QSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGRE-----  189 (293)
T ss_dssp             HHHHTTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCC-----
T ss_pred             HHHHHCCceeccCCccceeecCcccccCCceEEcccceeEEcccCccccceeecccCceEEchhhcCHHHhcCCC-----
Confidence            9999999999999999999986543333789999999999865432211  112223568999999999998765     


Q ss_pred             CCCCcCchhhHHHHHHHHhcCCCCCcccccccc---cc-------ccccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHH
Q psy4039         432 VNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTD---YE-------VNALPQLNTNVPEVMRRLVAKLLENDPSDRPSAEL  501 (588)
Q Consensus       432 ~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~---~~-------~~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e  501 (588)
                       ++.++|||||||++|||++|..||.+......   +.       ....+.+...+|+++.+++..|+..+|++||+.+.
T Consensus       190 -~~~~~DiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~p~~l~~ii~~~~~~~~~~rP~y~~  268 (293)
T d1csna_         190 -QSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPLRELCAGFPEEFYKYMHYARNLAFDATPDYDY  268 (293)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHHCCTTCCCCHHH
T ss_pred             -CChHHHHHHhhHHHHHHHhCCCcCCCccchhHHHHHHHHHhccCCCChHHhcCCCCHHHHHHHHHHhcCCcccCcCHHH
Confidence             45789999999999999999999975322111   00       01112344678999999999999999999999999


Q ss_pred             HHHHHhhhh
Q psy4039         502 AATVCQLYL  510 (588)
Q Consensus       502 ~l~~L~~~~  510 (588)
                      +.+.++..+
T Consensus       269 l~~~l~~~~  277 (293)
T d1csna_         269 LQGLFSKVL  277 (293)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888776543

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.1e-41  Score=352.11  Aligned_cols=258  Identities=16%  Similarity=0.218  Sum_probs=187.3

Q ss_pred             CCeEEeeeecccCceeEEEEEEC--CeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCC-----
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR--GVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENL-----  268 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~--g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l-----  268 (588)
                      ++|+++++||+|+||+||+|++.  |+.||||++++...                  ..+...+|+.+++.+...     
T Consensus        13 ~rY~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~~------------------~~~~~~~Ei~~l~~l~~~~~~~~   74 (362)
T d1q8ya_          13 ARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKV------------------YTEAAEDEIKLLQRVNDADNTKE   74 (362)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHH------------------HHHHHHHHHHHHHHHHHTCCSHH
T ss_pred             CcEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEecccc------------------chHHHHHHHHHHHHhcchhhhhh
Confidence            45999999999999999999986  89999999953210                  112334567666665211     


Q ss_pred             --CCCCceEEEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecC--CCcHHHHHHHh-cCCCCHHHHH
Q psy4039         269 --PPHPNVVVMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKY--NTDLRNYLRER-CAQLSMHERV  343 (588)
Q Consensus       269 --~~HpNIV~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~--~gsL~~~L~~~-~~~l~~~~~~  343 (588)
                        ..|+|||++++++....+                          ...+++|+++  .++........ ...+++..+.
T Consensus        75 ~~~~~~~iv~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  128 (362)
T d1q8ya_          75 DSMGANHILKLLDHFNHKGP--------------------------NGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVK  128 (362)
T ss_dssp             HHHHHTTBCCCCEEEEEEET--------------------------TEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHH
T ss_pred             hhcCcCceEEEEEEeeeccc--------------------------cceeeeeeecccccccccccccccccCCcHHHHH
Confidence              147899999999876421                          1255555554  44554444433 4578999999


Q ss_pred             HHHHHHHHHHHHHHh-CCceeccCCCCcEEEcCCCC-CCCCceeeeccccccccCCCCccccccccccccCCccccchhH
Q psy4039         344 LLFTQLLEGVTHLNM-HRTAHRDLKSDNILLDCSED-NTCPQLVITDFGSSYTNKSGLSMQYSSADIELGGNVALMAPEV  421 (588)
Q Consensus       344 ~i~~ql~~gL~yLH~-~~IvHrDLKp~NILld~~~~-~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y~APE~  421 (588)
                      .++.||+.||.|||+ .||+||||||+|||++.++. .....++++|||.|.......        ...+||+.|+|||+
T Consensus       129 ~i~~qil~al~~lh~~~~IvHrDlKp~NIll~~~~~~~~~~~~kl~dfg~s~~~~~~~--------~~~~gt~~y~aPE~  200 (362)
T d1q8ya_         129 QISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHY--------TNSIQTREYRSPEV  200 (362)
T ss_dssp             HHHHHHHHHHHHHHHTTCEECSCCSGGGEEEEEEETTTTEEEEEECCCTTCEETTBCC--------CSCCSCGGGCCHHH
T ss_pred             HHHHHHHHHHHHHhhhcCcccccCChhHeeeeccCcccccceeeEeeccccccccccc--------ccccccccccChhh
Confidence            999999999999998 89999999999999986522 111248999999997643311        24679999999999


Q ss_pred             HhcCCCCccCCCCCcCchhhHHHHHHHHhcCCCCCccccccccc------------------------------------
Q psy4039         422 ALATPGLFSFVNYSKSDAWTAGTVAYEIFGHDNPFYQSARNTDY------------------------------------  465 (588)
Q Consensus       422 l~~~~~~~~~~~~~ksDVwS~Gvil~ElltG~~Pf~~~~~~~~~------------------------------------  465 (588)
                      +.+..      ++.++||||+||+++||++|+.||.........                                    
T Consensus       201 ~~~~~------~~~~~DiwSlG~il~el~~g~~pF~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~  274 (362)
T d1q8ya_         201 LLGAP------WGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGL  274 (362)
T ss_dssp             HHTCC------CCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--C
T ss_pred             ccccC------CCccccccchHHHHHHHHHCCCCCCCCccccccchhHHHHHHHHHhCCCCHHHhhcccccccccccchh
Confidence            98765      557899999999999999999999642110000                                    


Q ss_pred             ----cc----------cccCCCCCCccHHHHHHHHHhhhhCCCCCCCHHHHHHHHhhhhhcCCccccCC
Q psy4039         466 ----EV----------NALPQLNTNVPEVMRRLVAKLLENDPSDRPSAELAATVCQLYLWAPKHWLYGA  520 (588)
Q Consensus       466 ----~~----------~~~~~~~~~~~~~l~~Li~~~L~~dP~~Rps~~e~l~~L~~~~~~~h~w~~~~  520 (588)
                          ..          ......+...++++++||.+||+.||.+|||++|+++         ||||++.
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~Rpta~e~L~---------Hp~f~~~  334 (362)
T d1q8ya_         275 LRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVN---------HPWLKDT  334 (362)
T ss_dssp             BSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHT---------CGGGTTC
T ss_pred             hhccccccCCchhhhcccccccCcccCHHHHHHHHHHCCCChhHCcCHHHHhc---------CcccCCC
Confidence                00          0011122345678999999999999999999999988         9999844

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.89  E-value=2.8e-24  Score=203.71  Aligned_cols=151  Identities=17%  Similarity=0.094  Sum_probs=104.1

Q ss_pred             eEEeeeecccCceeEEEEEEC-CeeEEEEEEecCCCCcch-HHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceE
Q psy4039         198 IQIGKFIAKGTNAVVYEATFR-GVEYALKMMFNYSAASNS-HAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVV  275 (588)
Q Consensus       198 ~~~~~~IG~G~fG~Vy~a~~~-g~~vAVK~i~~~~~~~~~-~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV  275 (588)
                      +.++++||+|+||+||+|++. |+.||||+++........ ....................+|...+..+    .|+|++
T Consensus         2 ~~vg~~IG~G~~g~Vy~a~~~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l----~~~~v~   77 (191)
T d1zara2           2 DAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKL----QGLAVP   77 (191)
T ss_dssp             SEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHT----TTSSSC
T ss_pred             chhCCEeeeCcceEEEEEECCCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHc----cCCCcc
Confidence            367899999999999999975 899999998642211000 00000000000011122334577888776    899998


Q ss_pred             EEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q psy4039         276 VMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNTDLRNYLRERCAQLSMHERVLLFTQLLEGVTH  355 (588)
Q Consensus       276 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~gsL~~~L~~~~~~l~~~~~~~i~~ql~~gL~y  355 (588)
                      ..+++..                                .+++||++++...       ..+++..+..++.|+++||.|
T Consensus        78 ~~~~~~~--------------------------------~~lvme~~~~~~~-------~~l~~~~~~~i~~ql~~~l~~  118 (191)
T d1zara2          78 KVYAWEG--------------------------------NAVLMELIDAKEL-------YRVRVENPDEVLDMILEEVAK  118 (191)
T ss_dssp             CEEEEET--------------------------------TEEEEECCCCEEG-------GGCCCSCHHHHHHHHHHHHHH
T ss_pred             eEEEecC--------------------------------CEEEEEeeccccc-------cchhhHHHHHHHHHHHHHHHH
Confidence            8775421                                3689999965311       146666778899999999999


Q ss_pred             HHhCCceeccCCCCcEEEcCCCCCCCCceeeeccccccccCC
Q psy4039         356 LNMHRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSYTNKS  397 (588)
Q Consensus       356 LH~~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~~~~~  397 (588)
                      ||++||+||||||+|||++++      .++|+|||+|....+
T Consensus       119 lH~~giiHrDiKP~NILv~~~------~~~liDFG~a~~~~~  154 (191)
T d1zara2         119 FYHRGIVHGDLSQYNVLVSEE------GIWIIDFPQSVEVGE  154 (191)
T ss_dssp             HHHTTEECSCCSTTSEEEETT------EEEECCCTTCEETTS
T ss_pred             HhhCCEEEccCChhheeeeCC------CEEEEECCCcccCCC
Confidence            999999999999999999854      588999999976543

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.82  E-value=7.3e-05  Score=71.19  Aligned_cols=139  Identities=17%  Similarity=0.021  Sum_probs=83.0

Q ss_pred             CCeEEeeeecccCceeEEEEEECCeeEEEEEEecCCCCcchHHHHHHHhhhhcccccchhhhHHHHHhhhcCCCCCCceE
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFRGVEYALKMMFNYSAASNSHAILKAMSKELLPLRKPLRLNEDMLMNSVENLPPHPNVV  275 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~g~~vAVK~i~~~~~~~~~~~~~k~~~~e~~~~~~~~~~~Ei~il~~l~~l~~HpNIV  275 (588)
                      +.|...+..+-++.+.||+....+..+.||+......                 .....+.+|..+++.+.....-|-+ 
T Consensus        14 ~~~~~~~~~~G~s~~~v~rv~~~~~~~vlk~~~~~~~-----------------~~~~~~~~E~~~l~~l~~~vpvP~v-   75 (263)
T d1j7la_          14 EKYRCVKDTEGMSPAKVYKLVGENENLYLKMTDSRYK-----------------GTTYDVEREKDMMLWLEGKLPVPKV-   75 (263)
T ss_dssp             TTSEEEECSCCCSSSEEEEEECSSCEEEEEEECGGGT-----------------TSTTCHHHHHHHHHHHTTTSCCCCE-
T ss_pred             hceEEEEcCCCCCCCcEEEEEeCCCeEEEEEcCCCcc-----------------cchhhHHHHHHHHHHHhccCCCCcE-
Confidence            4566666555455578999988888899998742111                 1223456788888777322233444 


Q ss_pred             EEeeeeeccCCCCCCCCCcCCCCCCCccCCCCCCCCCceEEEEEecCCC-cHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy4039         276 VMHFAFTDFVPSIPDSSLIYPSALPARLNPTGGYGRNMSLFILMKKYNT-DLRNYLRERCAQLSMHERVLLFTQLLEGVT  354 (588)
Q Consensus       276 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gg~~~~~~l~lvme~~~g-sL~~~L~~~~~~l~~~~~~~i~~ql~~gL~  354 (588)
                        +.++.+.                            +..++||++..| ++.+...      +......++.++++.+.
T Consensus        76 --l~~~~~~----------------------------~~~~lv~~~l~G~~~~~~~~------~~~~~~~~~~~l~~~l~  119 (263)
T d1j7la_          76 --LHFERHD----------------------------GWSNLLMSEADGVLCSEEYE------DEQSPEKIIELYAECIR  119 (263)
T ss_dssp             --EEEEEET----------------------------TEEEEEEECCSSEEHHHHTT------TCSCHHHHHHHHHHHHH
T ss_pred             --EEEEecC----------------------------CceEEEEEeccccccccccc------ccccHHHHHHHHHHHHH
Confidence              4444431                            247899999965 5543221      11112223334444444


Q ss_pred             HHHh-----------------------------------------------------------CCceeccCCCCcEEEcC
Q psy4039         355 HLNM-----------------------------------------------------------HRTAHRDLKSDNILLDC  375 (588)
Q Consensus       355 yLH~-----------------------------------------------------------~~IvHrDLKp~NILld~  375 (588)
                      .||+                                                           ..++|+|+.|.|||+++
T Consensus       120 ~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~HgD~~~~Nil~~~  199 (263)
T d1j7la_         120 LFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKD  199 (263)
T ss_dssp             HHHTSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCCGGGGSTTCSCSSHHHHHHHHHHSCCCCCEEEECSCCCTTSEEEET
T ss_pred             HHhccCccccccCcchhhhhhhHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHhcCCcCCcEEEEeeccCcceeecC
Confidence            4442                                                           12789999999999986


Q ss_pred             CCCCCCCceeeecccccc
Q psy4039         376 SEDNTCPQLVITDFGSSY  393 (588)
Q Consensus       376 ~~~~~~~~vkL~DFGla~  393 (588)
                      +     ..+-|+||+.+.
T Consensus       200 ~-----~~~~lIDwe~a~  212 (263)
T d1j7la_         200 G-----KVSGFIDLGRSG  212 (263)
T ss_dssp             T-----EEEEECCCTTCE
T ss_pred             C-----ceEEEeechhcc
Confidence            5     455699999874

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=97.32  E-value=0.00041  Score=70.63  Aligned_cols=28  Identities=18%  Similarity=0.255  Sum_probs=24.4

Q ss_pred             CceeccCCCCcEEEcCCCCCCCCceeeecccccc
Q psy4039         360 RTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSY  393 (588)
Q Consensus       360 ~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~  393 (588)
                      .++|+|+.|.|||++.+      .++|+||.+|.
T Consensus       224 ~LiHGDl~~gNIlv~~~------~~~vID~E~a~  251 (392)
T d2pula1         224 TLIHGDLHTGSIFASEH------ETKVIDPEFAF  251 (392)
T ss_dssp             EEECSCCCGGGEEECSS------CEEECCCTTCE
T ss_pred             ceeccCCcCCceeEcCC------ceEEechhhcc
Confidence            68999999999999865      57899999873

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=96.87  E-value=0.003  Score=59.08  Aligned_cols=29  Identities=21%  Similarity=0.128  Sum_probs=24.1

Q ss_pred             CceeccCCCCcEEEcCCCCCCCCceeeecccccc
Q psy4039         360 RTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSY  393 (588)
Q Consensus       360 ~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~  393 (588)
                      .++|+|+.|.|||++.+     ..+-|+||+.+.
T Consensus       176 ~liHgD~~~~Nvl~~~~-----~~~~iID~~~~~  204 (255)
T d1nd4a_         176 VVTHGDACLPNIMVENG-----RFSGFIDCGRLG  204 (255)
T ss_dssp             EEECSSCCGGGEEEETT-----EEEEECCCTTCE
T ss_pred             eEEeCCCCCcceEEeCC-----ceEEEEEchhcc
Confidence            37999999999999876     456699999773

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.03  E-value=0.0011  Score=65.87  Aligned_cols=59  Identities=17%  Similarity=0.156  Sum_probs=48.1

Q ss_pred             hHHHHHHHHhhhhhhcCC--chhHHHhHHH------HHHhhhcCCCCcccccccccccCcccccccccc
Q psy4039          59 QNARKLFVNSLLNRVTNS--MASDLRRKTI------QQLLYKDNSKPFLAFVGVSLASGTGILTNRVTN  119 (588)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~------~~l~~~~~~~pf~~~~~~~~~~~~~~~~~~~~~  119 (588)
                      .-++++|.+||.+|++++  +++||++|+|      ++|..+++.|||+|-+.  ...++..|+.+++.
T Consensus       234 dli~~~L~~dP~~R~~~~~~~~~eil~Hp~f~~i~~~~l~~~~~~~p~~P~~~--~~~~~~~f~~~~~~  300 (337)
T d1o6la_         234 SLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINWQDVVQKKLLPPFKPQVT--SEVDTRYFDDEFTA  300 (337)
T ss_dssp             HHHHHHTCSSTTTSTTCSTTTHHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCS--STTCCTTSCHHHHT
T ss_pred             HHHHhhccCCchhhcccccccHHHHHcCcccccCCHHHHHhCCCCCCCCCCCC--ChhhhhhcCchhhh
Confidence            458899999999999765  7999999998      78999999999999774  44466667776653

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=94.91  E-value=0.023  Score=55.47  Aligned_cols=28  Identities=21%  Similarity=0.232  Sum_probs=22.8

Q ss_pred             CCceeccCCCCcEEEcCCCCCCCCceeeecccccc
Q psy4039         359 HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSSY  393 (588)
Q Consensus       359 ~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla~  393 (588)
                      .++||+|+.+.|||++++       ..+.||+-|.
T Consensus       192 ~~liHgDlh~~NvL~~~~-------~~~IDFdd~~  219 (325)
T d1zyla1         192 VLRLHGDCHAGNILWRDG-------PMFVDLDDAR  219 (325)
T ss_dssp             CEECCSSCSGGGEEESSS-------EEECCCTTCC
T ss_pred             ceeecCCCCcccEEEeCC-------ceEEechhcc
Confidence            378999999999999743       2478999874

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.45  E-value=0.044  Score=54.80  Aligned_cols=31  Identities=13%  Similarity=0.307  Sum_probs=21.5

Q ss_pred             CCeEEeeeecccCceeEEEEEEC---------CeeEEEEEE
Q psy4039         196 DDIQIGKFIAKGTNAVVYEATFR---------GVEYALKMM  227 (588)
Q Consensus       196 ~~~~~~~~IG~G~fG~Vy~a~~~---------g~~vAVK~i  227 (588)
                      +++++ +.|+.|-.-.+|+....         ...|.+++.
T Consensus        43 ~~l~v-~~l~GGltN~~y~v~~~~~~~~~~~~~~~vllRi~   82 (395)
T d1nw1a_          43 EHLRI-SRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVY   82 (395)
T ss_dssp             GGEEE-EEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEE
T ss_pred             cceEE-EEcCCccccceEEEEeCCCCccccCCCCcEEEEec
Confidence            55555 46787888899999875         245666665

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.16  E-value=0.0083  Score=58.79  Aligned_cols=45  Identities=16%  Similarity=0.285  Sum_probs=39.4

Q ss_pred             hHHHHHHHHhhhhhhcCC--chhHHHhHHH------HHHhhhcCCCCcccccc
Q psy4039          59 QNARKLFVNSLLNRVTNS--MASDLRRKTI------QQLLYKDNSKPFLAFVG  103 (588)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~------~~l~~~~~~~pf~~~~~  103 (588)
                      .-++++|..||.+|+|.+  .++||++|+|      ++|..+++.|||+|-+.
T Consensus       265 ~li~~~l~~dP~~R~s~~~~t~~eil~Hpff~~i~~~~l~~~~~~~p~~p~~~  317 (322)
T d1vzoa_         265 DLIQRLLMKDPKKRLGCGPRDADEIKEHLFFQKINWDDLAAKKVPAPFKPVIR  317 (322)
T ss_dssp             HHHHHHTCSSGGGSTTSSTTTHHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCC
T ss_pred             HHHHHHcccCHHHcCCCCcccHHHHHcCHhhcCCCHHHHHhCCCCcCCCCCCC
Confidence            447788888999999876  6999999999      69999999999999763

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.18  E-value=0.014  Score=56.99  Aligned_cols=46  Identities=17%  Similarity=0.271  Sum_probs=40.8

Q ss_pred             HHhHHHHHHHHhhhhhhcCC--chhHHHhHHH------HHHhhhcCCCCccccc
Q psy4039          57 YFQNARKLFVNSLLNRVTNS--MASDLRRKTI------QQLLYKDNSKPFLAFV  102 (588)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~------~~l~~~~~~~pf~~~~  102 (588)
                      +-.-++++|.+||.+|+++.  .++||++|+|      ++|..|+++|||.+-+
T Consensus       228 ~~~li~~~L~~dp~~R~~~~r~t~~~il~Hp~f~~i~~~~l~~~~~~~p~~p~~  281 (316)
T d1fota_         228 VKDLLSRLITRDLSQRLGNLQNGTEDVKNHPWFKEVVWEKLLSRNIETPYEPPI  281 (316)
T ss_dssp             HHHHHHHHTCSCTTTCTTSSTTTTHHHHTSGGGSSCCHHHHHTTCSCCSCCCCC
T ss_pred             HHHHHHHHhhhCHHhccccchhhHHHHHcCcccccCCHHHHHhCCCCcCCCCCc
Confidence            44568999999999999776  8999999999      7899999999999865

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.48  E-value=0.029  Score=55.42  Aligned_cols=55  Identities=16%  Similarity=0.179  Sum_probs=43.8

Q ss_pred             HHhHHHHHHHHhhhhhhcCC--chhHHHhHHH------HHHhhhcCCCCcccccccccccCcccc
Q psy4039          57 YFQNARKLFVNSLLNRVTNS--MASDLRRKTI------QQLLYKDNSKPFLAFVGVSLASGTGIL  113 (588)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~------~~l~~~~~~~pf~~~~~~~~~~~~~~~  113 (588)
                      +-.-++++|..||.+|.++-  .++||++|+|      .+|..+++.|||.|-+-  +.++++.|
T Consensus       265 ~~~li~~~L~~dP~kR~~~~r~t~~ell~Hp~f~~~~~~~~~~~~~~~p~~p~~~--~~~d~s~~  327 (350)
T d1rdqe_         265 LKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFK--GPGDTSNF  327 (350)
T ss_dssp             HHHHHHHHSCSCTTTCTTSSTTTTHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCC--STTCCTTS
T ss_pred             HHHHHHHHhhhCHHhccccccccHHHHHcCccccCCCHHHHHhcCCCcCccCCCC--Ccchhhhc
Confidence            45668999999999999654  8999999998      78999999999998653  33344444

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.30  E-value=0.021  Score=56.73  Aligned_cols=50  Identities=12%  Similarity=0.131  Sum_probs=40.5

Q ss_pred             HHhHHHHHHHHhhhhhhcCC--chhHHHhHHH------HHHhhhcCCCCccccccccc
Q psy4039          57 YFQNARKLFVNSLLNRVTNS--MASDLRRKTI------QQLLYKDNSKPFLAFVGVSL  106 (588)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~------~~l~~~~~~~pf~~~~~~~~  106 (588)
                      +-.-++++|..||.+|+|..  +|+||++|+|      ++|..|++.|||.|-.....
T Consensus       236 ~~~li~~~L~~dP~~R~t~~~~~a~eil~Hp~f~~i~~~~~~~~~~~~p~~p~~~~~~  293 (364)
T d1omwa3         236 LRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFFRSLDWQMVFLQKYPPPLIPPRGEVN  293 (364)
T ss_dssp             HHHHHHHHTCSSTTTSTTTSSSTHHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCC---
T ss_pred             HHHHHHHHcccCHHHhCCCcccCHHHHHcCccccCCCHHHHhcCCCCcCcCCCCCCCC
Confidence            44558899999999999864  6999999999      78999999999998665444

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.79  E-value=0.016  Score=56.67  Aligned_cols=60  Identities=22%  Similarity=0.220  Sum_probs=30.7

Q ss_pred             HHhHHHHHHHHhhhhhhcCCchhHHHhHHH------HHHhhhcCCCCcccccccccccCccccccccccc
Q psy4039          57 YFQNARKLFVNSLLNRVTNSMASDLRRKTI------QQLLYKDNSKPFLAFVGVSLASGTGILTNRVTNS  120 (588)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~~~~~pf~~~~~~~~~~~~~~~~~~~~~~  120 (588)
                      +-.-++++|.+||.+|.|.  .+||++|+|      ++|..+++.||++|.+.  +.++.+.|+.+++..
T Consensus       230 ~~dli~~~L~~dP~~R~s~--~~~l~~hpff~~~~~~~l~~~~~~pp~~p~~~--~~~d~~~f~~~~~~~  295 (320)
T d1xjda_         230 AKDLLVKLFVREPEKRLGV--RGDIRQHPLFREINWEELERKEIDPPFRPKVK--SPFDCSNFDKEFLNE  295 (320)
T ss_dssp             HHHHHHHHSCSSGGGSBTT--BSCGGGSGGGTTCCHHHHHTTCSCC------------------------
T ss_pred             HHHHHHHhcccCCCCCcCH--HHHHHhCchhccCCHHHHHhcCCCCCCCCCCC--CccchhhcChHhhhC
Confidence            3345889999999999952  247999998      57889999999999763  334666677666543

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=91.11  E-value=0.054  Score=52.04  Aligned_cols=29  Identities=24%  Similarity=0.222  Sum_probs=25.2

Q ss_pred             CCceeccCCCCcEEEcCCCCCCCCceeeeccccc
Q psy4039         359 HRTAHRDLKSDNILLDCSEDNTCPQLVITDFGSS  392 (588)
Q Consensus       359 ~~IvHrDLKp~NILld~~~~~~~~~vkL~DFGla  392 (588)
                      .|+||+|+.++||+++.+     ...-|.||+.|
T Consensus       183 ~giIHgDl~~dNvl~~~~-----~v~gvIDF~~~  211 (316)
T d2ppqa1         183 AGVIHADLFQDNVFFLGD-----ELSGLIDFYFA  211 (316)
T ss_dssp             EEEECSCCCGGGEEEETT-----EEEEECCCTTC
T ss_pred             cccccCCcchhhhhcccc-----cceeEeccccc
Confidence            489999999999999976     45579999987