Psyllid ID: psy4063

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-----
Protein Sequence
MEYYEWKDHPSYQTTPSALKLCSDLYHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGEKKKGIIVGVKKHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTNTLNSINNISMNVAKLLKFSRCSPLHFSPSYSHSSFRLQHATGTSSNPQEADKFQVL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccEEEccccccccccccEEEEEEcccccccccccccccEEEEEEccccEEEcccEEEEEEcccEEEEEEEEEEEEcccccccccccEEEEEcccccccccEEEcccHHHHHcccccccccccccEEEEEEEHHHHHHHHHHHHccccccccccccccccccEEEEEccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEcccccccccHHHHHHHHccccccHHHHHHHHHcEEEEEEcccccccccccccccEEEEEEccccEEEEccEEEEEEEccEEEEEEEEEEccccccEEEcccccEEEEEccccccccEEEcccHHHHHHHcccHEEccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEccccccccccHHcccEcc
Coil and Loop (DISEMBL)
meyyewkdhpsyqttpsalklcsdlyhttpclhhiklltrlrvvdnceigrqamaegkpprVIAIYNQTHIGTIGDKVLVAIKGEKKKGIIVGVkkhqkphipktdtnnvvliddsgtplgtrihvpipsMLRTILKEKtlskgadytntLNSINNISMNVAKLLkfsrcsplhfspsyshssfrlqhatgtssnpqeadkfqvl
Flexible Loop (DISEMBL)
meyyewkdhpsyqTTPSALKLCSDLYHTTPCLHHIKLLTRLRVVDNCEIGRqamaegkpprVIAIYNQTHIGTIGDKVLVAIKGEKKKGIIVgvkkhqkphipktdtnnvvliDDSGtplgtrihvpipsMLRTILKEKTLSKGADYTNTLNSINNISMNVAKLLKFSRCSPLHFSPSYSHSSFRLQHAtgtssnpqeadkfqvl
Low Complexity Region (SEG)
MEYYEWKDHPSYQTTPSALKLCSDLYHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLvaikgekkkgiivgvkkHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTNTLNSINNISMNVAKLLKFSRCSPLHFSPSYSHSSFRLQHATGTSSNPQEADKFQVL
Disordered region (IsUnstruct)
*************TTPSALKLCSDLYHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGEKKKGIIVGVKKHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTNTLNSINNISMNVAKLLKFSRCSPLHF******************************
Disordered Region (DISOPRED)
*EYY*W*DHPSYQTTPSALKLCS***HTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGEKKKGIIVGVKKHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTNTLNSINNISMNVAKLLKFSRCSPLHFSPSYSHSSF*****************FQVL
Disordered Region (DISEMBL)
*************TTPSALKLCSDLYHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGEKKKGIIVGVKKHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTNTLNSINNISMNVAKLLKFSRCSPLHFSPSY**************************
Disordered Region (DISPRO)
*EYYEWKDHPSYQTTPSALKLCSDLYHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGEKKKGIIVGVKKHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTNTLNSINNISMNVAKLLKFSRCSPLHFSPSYSHSS**LQ******************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEYYEWKDHPSYQTTPSALKLCSDLYHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGEKKKGIIVGVKKHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTNTLNSINNISMNVAKLLKFSRCSPLHFSPSYSHSSFRLQHATGTSSNPQEADKFQVL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	205	2.2.26 [Sep-21-2011]
Q9D1I6	145	39S ribosomal protein L14	yes	N/A	0.517	0.731	0.462	8e-23
Q7M0E7	145	39S ribosomal protein L14	yes	N/A	0.517	0.731	0.472	9e-23
Q1JQ99	145	39S ribosomal protein L14	yes	N/A	0.556	0.786	0.466	1e-22
Q7ZUH5	141	39S ribosomal protein L14	yes	N/A	0.541	0.787	0.469	5e-22
Q6P1L8	145	39S ribosomal protein L14	yes	N/A	0.517	0.731	0.462	5e-20
B3CT15	122	50S ribosomal protein L14	yes	N/A	0.443	0.745	0.336	0.0001
Q4FLM8	122	50S ribosomal protein L14	yes	N/A	0.341	0.573	0.361	0.0005

>sp|Q9D1I6|RM14_MOUSE 39S ribosomal protein L14, mitochondrial OS=Mus musculus GN=Mrpl14 PE=2 SV=1

 Score =  106 bits (265), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 50/108 (46%), Positives = 77/108 (71%), Gaps = 2/108 (1%)

Query: 26  YHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGE 85
           + T+  L  ++ +TR+RVVDN  +G  +    +PPR I +YN++ +G +GD++L+AI+G+
Sbjct: 23  FSTSGSLSAVQKMTRVRVVDNSALG--STPYHRPPRCIHVYNKSGVGKVGDQILLAIRGQ 80

Query: 86  KKKGIIVGVKKHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLR 133
           KKK +IVG +       PK D+NNVVLI+D+G P+GTRI +PIP+ LR
Sbjct: 81  KKKALIVGHRMPGSRMTPKFDSNNVVLIEDNGNPVGTRIKIPIPTSLR 128

Mus musculus (taxid: 10090)

>sp|Q7M0E7|RM14_RAT 39S ribosomal protein L14, mitochondrial OS=Rattus norvegicus GN=Mrpl14 PE=1 SV=2

 Score =  106 bits (265), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 51/108 (47%), Positives = 76/108 (70%), Gaps = 2/108 (1%)

Query: 26  YHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGE 85
           + T+  L  I+ +TR+RVVDN  +G       +PPR I +YN++ +G +GD++L+AI+G+
Sbjct: 23  FSTSGSLSAIQKMTRVRVVDNSALGNTPYH--RPPRCIHVYNKSGVGKVGDQILLAIRGQ 80

Query: 86  KKKGIIVGVKKHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLR 133
           KKK +IVG +       PK D+NNVVLI+D+G P+GTRI +PIP+ LR
Sbjct: 81  KKKALIVGHRMPGSRMTPKFDSNNVVLIEDNGNPVGTRIKIPIPTSLR 128

Rattus norvegicus (taxid: 10116)

>sp|Q1JQ99|RM14_BOVIN 39S ribosomal protein L14, mitochondrial OS=Bos taurus GN=MRPL14 PE=2 SV=1

 Score =  106 bits (265), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 55/118 (46%), Positives = 78/118 (66%), Gaps = 4/118 (3%)

Query: 26  YHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGE 85
           + TT  L  I+ +TR+RVVDN  +G       +PPR I +YN+  +G +GD++L+AIKG+
Sbjct: 23  FSTTGSLGAIQKMTRVRVVDNSALGNTPYH--RPPRCIHVYNKNGVGKVGDRILLAIKGQ 80

Query: 86  KKKGIIVGVKKHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSK 143
           KKK +IVG +       P+ D+NNVVLI+D+G P+GTRI  PIP+ LR   +E   SK
Sbjct: 81  KKKALIVGHRMPGPTMTPRFDSNNVVLIEDNGNPVGTRIKTPIPTSLRQ--REGEFSK 136

Bos taurus (taxid: 9913)

>sp|Q7ZUH5|RM14_DANRE 39S ribosomal protein L14, mitochondrial OS=Danio rerio GN=mrpl14 PE=2 SV=1

 Score =  104 bits (259), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 53/113 (46%), Positives = 75/113 (66%), Gaps = 2/113 (1%)

Query: 26  YHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGE 85
           +  +  +  I+ LTR+RVVDN  +G       +PP+VI +YN+  +G +GD+VL+AIKG+
Sbjct: 19  FSVSSAVSAIQKLTRVRVVDNSTLGNAH--HHRPPKVIHVYNKNGVGKVGDRVLLAIKGQ 76

Query: 86  KKKGIIVGVKKHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKE 138
           KKK IIVG K       P+ D+NNVVLI+D+G P GTRI  P+P+ LR +  E
Sbjct: 77  KKKAIIVGHKMPGARMTPRFDSNNVVLIEDNGNPTGTRIKAPLPTHLRKLEGE 129

Danio rerio (taxid: 7955)

>sp|Q6P1L8|RM14_HUMAN 39S ribosomal protein L14, mitochondrial OS=Homo sapiens GN=MRPL14 PE=1 SV=1

 Score = 97.4 bits (241), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 50/108 (46%), Positives = 71/108 (65%), Gaps = 2/108 (1%)

Query: 26  YHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGE 85
           + TT  L  I+ +TR+RVVDN  +G       + PR I +Y +  +G +GD++L+AIKG+
Sbjct: 23  FSTTGSLSAIQKMTRVRVVDNSALGNSPYH--RAPRCIHVYKKNGVGKVGDQILLAIKGQ 80

Query: 86  KKKGIIVGVKKHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLR 133
           KKK +IVG         P+ D+NNVVLI+D+G P+GTRI  PIP+ LR
Sbjct: 81  KKKALIVGHCMPGPRMTPRFDSNNVVLIEDNGNPVGTRIKTPIPTSLR 128

Homo sapiens (taxid: 9606)

>sp|B3CT15|RL14_ORITI 50S ribosomal protein L14 OS=Orientia tsutsugamushi (strain Ikeda) GN=rplN PE=3 SV=1

 Score = 47.0 bits (110), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 56/116 (48%), Gaps = 25/116 (21%)

Query: 35  IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTH--IGTIGDKVLVAIK--------- 83
           I++ T L V DN        +  K    I +   TH  I  +GD ++V+IK         
Sbjct: 2   IQMQTILNVADN--------SGAKEVMCIKVLGGTHHMIAHLGDVIVVSIKSSIPKGKVK 53

Query: 84  -GEKKKGIIV----GVKKHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRT 134
            GE  K +I+    GV +H   +I K D+N+VVL++  G P GTRI   +P  LR 
Sbjct: 54  KGEVCKALIIRTKCGVTRHDGSNI-KFDSNDVVLLNKQGEPFGTRIFGSVPRELRV 108

Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.

Orientia tsutsugamushi (strain Ikeda) (taxid: 334380)

>sp|Q4FLM8|RL14_PELUB 50S ribosomal protein L14 OS=Pelagibacter ubique (strain HTCC1062) GN=rplN PE=3 SV=1

 Score = 44.3 bits (103), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 13/83 (15%)

Query: 73  TIGDKVLVAIK-----GEKKKG-----IIVGVKK---HQKPHIPKTDTNNVVLIDDSGTP 119
           +IGD +++A+K     G+ KKG     ++V VKK    +     + D N  VL+DD G P
Sbjct: 34  SIGDTIVIAVKEALPKGKVKKGSVHKAVVVRVKKGIHREDGSKVRFDNNAAVLVDDKGEP 93

Query: 120 LGTRIHVPIPSMLRTILKEKTLS 142
           +GTRI  P+   LR+  + K +S
Sbjct: 94  VGTRIFGPVTRELRSRGQMKIIS 116

Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.

Pelagibacter ubique (strain HTCC1062) (taxid: 335992)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
389610075	166	mitochondrial ribosomal protein L14 [Pap	0.643	0.795	0.669	3e-46
312375533	151	hypothetical protein AND_14049 [Anophele	0.609	0.827	0.696	3e-45
195477648	161	GE16952 [Drosophila yakuba] gi|194187791	0.629	0.801	0.674	3e-45
158287481	161	AGAP011146-PA [Anopheles gambiae str. PE	0.614	0.782	0.698	5e-45
194913216	161	GG12621 [Drosophila erecta] gi|190648324	0.629	0.801	0.674	7e-45
125983548	165	GA12726 [Drosophila pseudoobscura pseudo	0.692	0.860	0.634	7e-45
158287477	160	AGAP011148-PA [Anopheles gambiae str. PE	0.614	0.787	0.698	9e-45
17986013	161	mitochondrial ribosomal protein L14, iso	0.629	0.801	0.674	1e-44
242247599	142	39S ribosomal protein L14, mitochondrial	0.639	0.922	0.687	2e-44
195447876	162	GK25783 [Drosophila willistoni] gi|19416	0.629	0.796	0.658	3e-44

>gi|389610075|dbj|BAM18649.1| mitochondrial ribosomal protein L14 [Papilio xuthus]

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 91/136 (66%), Positives = 115/136 (84%), Gaps = 4/136 (2%)

Query: 20  KLC----SDLYHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIG 75
           KLC    S  +HT+  L+ ++LLTRLRVVDN EIG++AMAEGKPP+VI +YN+  IG IG
Sbjct: 24  KLCFNNLSCGFHTSASLNEVQLLTRLRVVDNSEIGKRAMAEGKPPKVICVYNKKRIGYIG 83

Query: 76  DKVLVAIKGEKKKGIIVGVKKHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTI 135
           D+V+VAIKG+KKKGI+VG+K+ QK  +PK D+NN+VLIDD+GTPLGTRIHVPIP++LRTI
Sbjct: 84  DRVMVAIKGQKKKGILVGLKQTQKVKVPKFDSNNIVLIDDNGTPLGTRIHVPIPTILRTI 143

Query: 136 LKEKTLSKGADYTNTL 151
           LKE+T +KGADYT  L
Sbjct: 144 LKERTHAKGADYTKLL 159

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312375533|gb|EFR22890.1| hypothetical protein AND_14049 [Anopheles darlingi]

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 87/125 (69%), Positives = 106/125 (84%)

Query: 27  HTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGEK 86
           HTT     I+ + RLRVVDN EIG++AMAEG+PP+ I +YN+  +G IGDKVLVAIKG+K
Sbjct: 20  HTTAACSEIRKMARLRVVDNSEIGKRAMAEGRPPKCIHVYNKRGVGMIGDKVLVAIKGQK 79

Query: 87  KKGIIVGVKKHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGAD 146
           KKGI+VG+++ QKP +PK DTNN+VLIDD+GTPLGTRIHVPIP+MLRTILKEKT +KGAD
Sbjct: 80  KKGILVGLRQFQKPKVPKFDTNNLVLIDDNGTPLGTRIHVPIPTMLRTILKEKTQAKGAD 139

Query: 147 YTNTL 151
           YT  L
Sbjct: 140 YTKLL 144

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195477648|ref|XP_002100267.1| GE16952 [Drosophila yakuba] gi|194187791|gb|EDX01375.1| GE16952 [Drosophila yakuba]

 Score =  186 bits (473), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 87/129 (67%), Positives = 109/129 (84%)

Query: 23  SDLYHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAI 82
            +L HTTP    I+ L RLRVVDN ++G++AMAEG+PPR I +YN+  +G IGDKVLVAI
Sbjct: 26  QELIHTTPACWEIRKLARLRVVDNSDLGKKAMAEGRPPRCIHVYNKRGVGLIGDKVLVAI 85

Query: 83  KGEKKKGIIVGVKKHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLS 142
           KG+ KKGI+VG+K++QKP  PK D+NN+VLIDD+G+PLGTRIHVPIP++LRTILKEKTL+
Sbjct: 86  KGQMKKGILVGLKQNQKPKQPKFDSNNLVLIDDNGSPLGTRIHVPIPTILRTILKEKTLA 145

Query: 143 KGADYTNTL 151
           KGADYT  L
Sbjct: 146 KGADYTKVL 154

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158287481|ref|XP_309502.3| AGAP011146-PA [Anopheles gambiae str. PEST] gi|157019671|gb|EAA05152.3| AGAP011146-PA [Anopheles gambiae str. PEST]

 Score =  186 bits (472), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 88/126 (69%), Positives = 105/126 (83%)

Query: 27  HTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGEK 86
           HTT     I+ + RLRVVDN EIG++AMAEGKPP+ I +YN+  +G IGDKVLVAIKG+K
Sbjct: 30  HTTAVCSEIRKMARLRVVDNSEIGKRAMAEGKPPKCIHVYNKQSVGMIGDKVLVAIKGQK 89

Query: 87  KKGIIVGVKKHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGAD 146
           KKGI+VG K+ QKP IPK D+NN+VLIDD+GTPLGTRIHVPIP++LRTILKEKT +KGAD
Sbjct: 90  KKGILVGCKQFQKPKIPKFDSNNLVLIDDNGTPLGTRIHVPIPTILRTILKEKTQAKGAD 149

Query: 147 YTNTLN 152
           YT  L 
Sbjct: 150 YTKLLG 155

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194913216|ref|XP_001982648.1| GG12621 [Drosophila erecta] gi|190648324|gb|EDV45617.1| GG12621 [Drosophila erecta]

 Score =  186 bits (471), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 87/129 (67%), Positives = 109/129 (84%)

Query: 23  SDLYHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAI 82
            +L HTTP    I+ L RLRVVDN ++G++AMAEG+PPR I +YN+  +G IGDKVLVAI
Sbjct: 26  QELIHTTPACCEIRKLARLRVVDNSDLGKKAMAEGRPPRCIHVYNKRGVGFIGDKVLVAI 85

Query: 83  KGEKKKGIIVGVKKHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLS 142
           KG+ KKGI+VG+K++QKP  PK D+NN+VLIDD+G+PLGTRIHVPIP++LRTILKEKTL+
Sbjct: 86  KGQMKKGILVGLKQNQKPKQPKFDSNNLVLIDDNGSPLGTRIHVPIPTILRTILKEKTLA 145

Query: 143 KGADYTNTL 151
           KGADYT  L
Sbjct: 146 KGADYTKVL 154

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125983548|ref|XP_001355539.1| GA12726 [Drosophila pseudoobscura pseudoobscura] gi|54643855|gb|EAL32598.1| GA12726 [Drosophila pseudoobscura pseudoobscura]

 Score =  185 bits (470), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 92/145 (63%), Positives = 114/145 (78%), Gaps = 3/145 (2%)

Query: 10  PSYQTTPSALKLCS---DLYHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIY 66
           P    T SA  + S    L HTTP    I+ L RLRVVDN ++G++AMAEG+PPR I +Y
Sbjct: 14  PVATITASARAVTSRQQQLLHTTPACCEIRKLARLRVVDNSDLGKRAMAEGRPPRCIHVY 73

Query: 67  NQTHIGTIGDKVLVAIKGEKKKGIIVGVKKHQKPHIPKTDTNNVVLIDDSGTPLGTRIHV 126
           N+  +G IGDKVLVAIKG+ KKGI+VG+K++QKP  PK D+NN+VLIDD+G+PLGTRIHV
Sbjct: 74  NKRGVGYIGDKVLVAIKGQMKKGILVGLKQNQKPKQPKFDSNNLVLIDDNGSPLGTRIHV 133

Query: 127 PIPSMLRTILKEKTLSKGADYTNTL 151
           PIP++LRTILKEKTL+KGADYT  L
Sbjct: 134 PIPTVLRTILKEKTLAKGADYTKVL 158

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158287477|ref|XP_564374.3| AGAP011148-PA [Anopheles gambiae str. PEST] gi|157019669|gb|EAL41596.3| AGAP011148-PA [Anopheles gambiae str. PEST]

 Score =  185 bits (470), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 88/126 (69%), Positives = 105/126 (83%)

Query: 27  HTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGEK 86
           HTT     I+ + RLRVVDN EIG++AMAEGKPP+ I +YN+  +G IGDKVLVAIKG+K
Sbjct: 29  HTTAVCSEIRKMARLRVVDNSEIGKRAMAEGKPPKCIHVYNKQSVGMIGDKVLVAIKGQK 88

Query: 87  KKGIIVGVKKHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGAD 146
           KKGI+VG K+ QKP IPK D+NN+VLIDD+GTPLGTRIHVPIP++LRTILKEKT +KGAD
Sbjct: 89  KKGILVGCKQFQKPKIPKFDSNNLVLIDDNGTPLGTRIHVPIPTILRTILKEKTQAKGAD 148

Query: 147 YTNTLN 152
           YT  L 
Sbjct: 149 YTKLLG 154

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|17986013|ref|NP_525048.1| mitochondrial ribosomal protein L14, isoform A [Drosophila melanogaster] gi|442614934|ref|NP_001259186.1| mitochondrial ribosomal protein L14, isoform B [Drosophila melanogaster] gi|6594140|emb|CAB63504.1| EG:BACH48C10.6 [Drosophila melanogaster] gi|7290314|gb|AAF45775.1| mitochondrial ribosomal protein L14, isoform A [Drosophila melanogaster] gi|17946504|gb|AAL49284.1| RE74864p [Drosophila melanogaster] gi|18447570|gb|AAL68346.1| RH18819p [Drosophila melanogaster] gi|220949240|gb|ACL87163.1| mRpL14-PA [synthetic construct] gi|220958382|gb|ACL91734.1| mRpL14-PA [synthetic construct] gi|440216370|gb|AGB95032.1| mitochondrial ribosomal protein L14, isoform B [Drosophila melanogaster]

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 87/129 (67%), Positives = 108/129 (83%)

Query: 23  SDLYHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAI 82
             L HTTP    I+ L RLRVVDN ++G++AMAEG+PPR I +YN+  +G IGDKVLVAI
Sbjct: 26  QQLIHTTPACCEIRKLARLRVVDNSDLGKKAMAEGRPPRCIHVYNKRGVGFIGDKVLVAI 85

Query: 83  KGEKKKGIIVGVKKHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLS 142
           KG+ KKGI+VG+K++QKP  PK D+NN+VLIDD+G+PLGTRIHVPIP++LRTILKEKTL+
Sbjct: 86  KGQMKKGILVGLKQNQKPKQPKFDSNNLVLIDDNGSPLGTRIHVPIPTILRTILKEKTLA 145

Query: 143 KGADYTNTL 151
           KGADYT  L
Sbjct: 146 KGADYTKVL 154

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242247599|ref|NP_001156141.1| 39S ribosomal protein L14, mitochondrial-like [Acyrthosiphon pisum] gi|239788165|dbj|BAH70774.1| ACYPI003461 [Acyrthosiphon pisum]

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 90/131 (68%), Positives = 106/131 (80%)

Query: 26  YHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGE 85
           + T+   +HI  LTRLRVVDN  IG+QAMAEGKPPR I +YN+  IGTIGDK++VAIKGE
Sbjct: 10  FSTSAVSNHIMKLTRLRVVDNSTIGKQAMAEGKPPRCIHVYNKKGIGTIGDKIMVAIKGE 69

Query: 86  KKKGIIVGVKKHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGA 145
           K K IIVG  K QKP+IP+ D+NN+VLIDD+GTPLGTRI+VPIP +LRTILKEKT SKGA
Sbjct: 70  KVKAIIVGCVKEQKPNIPRFDSNNIVLIDDNGTPLGTRINVPIPIVLRTILKEKTFSKGA 129

Query: 146 DYTNTLNSINN 156
           DYT  L   +N
Sbjct: 130 DYTKLLAIASN 140

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195447876|ref|XP_002071410.1| GK25783 [Drosophila willistoni] gi|194167495|gb|EDW82396.1| GK25783 [Drosophila willistoni]

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 85/129 (65%), Positives = 108/129 (83%)

Query: 23  SDLYHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAI 82
           + L+HT+P    I+ L RLRVVDN ++G++AMAEG+PPR I +YN+  +G IGDKVLVAI
Sbjct: 27  TQLFHTSPACMEIRKLARLRVVDNSDLGKRAMAEGRPPRCIHVYNKRGVGLIGDKVLVAI 86

Query: 83  KGEKKKGIIVGVKKHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLS 142
           KG+ KKGI+VG+K++Q    PK D+NN+VLIDD+G+PLGTRIHVPIPS+LRTILKEKTL+
Sbjct: 87  KGQMKKGILVGLKQNQPSKQPKFDSNNLVLIDDNGSPLGTRIHVPIPSILRTILKEKTLA 146

Query: 143 KGADYTNTL 151
           KGADYT  L
Sbjct: 147 KGADYTKVL 155

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
FB|FBgn0040389	161	mRpL14 "mitochondrial ribosoma	0.619	0.788	0.590	3.1e-35
UNIPROTKB|F1RQV7	145	MRPL14 "Uncharacterized protei	0.556	0.786	0.389	2.9e-16
UNIPROTKB|E1C7I2	146	MRPL14 "Uncharacterized protei	0.507	0.712	0.427	3.7e-16
RGD|1306240	145	Mrpl14 "mitochondrial ribosoma	0.517	0.731	0.388	6e-16
MGI|MGI:1333864	145	Mrpl14 "mitochondrial ribosoma	0.517	0.731	0.379	7.7e-16
UNIPROTKB|Q1JQ99	145	MRPL14 "39S ribosomal protein	0.556	0.786	0.381	9.8e-16
UNIPROTKB|J9NW30	145	MRPL14 "Uncharacterized protei	0.556	0.786	0.372	1.6e-15
ZFIN|ZDB-GENE-040426-1066	141	mrpl14 "mitochondrial ribosoma	0.482	0.702	0.396	1.1e-14
UNIPROTKB|Q6P1L8	145	MRPL14 "39S ribosomal protein	0.517	0.731	0.370	4.9e-14

FB|FBgn0040389 mRpL14 "mitochondrial ribosomal protein L14" [Drosophila melanogaster (taxid:7227)]

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 75/127 (59%), Positives = 92/127 (72%)

Query:    25 LYHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLXXXXX 84
             L HTTP    I+ L RLRVVDN ++G++AMAEG+PPR I +YN+  +G IGDKVL     
Sbjct:    28 LIHTTPACCEIRKLARLRVVDNSDLGKKAMAEGRPPRCIHVYNKRGVGFIGDKVLVAIKG 87

Query:    85 XXXXXXXXXXXXHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKG 144
                         +QKP  PK D+NN+VLIDD+G+PLGTRIHVPIP++LRTILKEKTL+KG
Sbjct:    88 QMKKGILVGLKQNQKPKQPKFDSNNLVLIDDNGSPLGTRIHVPIPTILRTILKEKTLAKG 147

Query:   145 ADYTNTL 151
             ADYT  L
Sbjct:   148 ADYTKVL 154

GO:0006412 "translation" evidence=ISS

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

UNIPROTKB|F1RQV7 MRPL14 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 46/118 (38%), Positives = 65/118 (55%)

Query:    26 YHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLXXXXXX 85
             + TT  L  I+ +TR+RVVDN  +G       +PPR I +YN+T +G +GD++L      
Sbjct:    23 FSTTGSLSAIQKMTRVRVVDNSALGTTPYH--RPPRCIHVYNKTGVGKVGDRILLAIRGQ 80

Query:    86 XXXXXXXXXXXHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSK 143
                              P+ D+NNVVL++D+G P+GTRI  PIPS LR   +E   SK
Sbjct:    81 KKKALIVGHRMPGPRMTPRFDSNNVVLLEDNGNPVGTRIKTPIPSSLRQ--REGEFSK 136

GO:0005739 "mitochondrion" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|E1C7I2 MRPL14 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 47/110 (42%), Positives = 64/110 (58%)

Query:    35 IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLXXXXXXXXXXXXXXX 94
             I+ LTR+RVVDN  +G       +PP+ I +YN+T +G +GDK+L               
Sbjct:    33 IQKLTRVRVVDNSALGNAPYH--RPPKCIHVYNKTGVGKVGDKILLAIKGEKKKALIVGH 90

Query:    95 XXHQKPHI-PKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSK 143
                  PH+ P+ D+NNVVLI+D+G PLGTRI  PIP +LR   +E   SK
Sbjct:    91 KM-PGPHMTPRFDSNNVVLIEDNGNPLGTRIKTPIPYILRR--REGEFSK 137

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

RGD|1306240 Mrpl14 "mitochondrial ribosomal protein L14" [Rattus norvegicus (taxid:10116)]

 Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 42/108 (38%), Positives = 62/108 (57%)

Query:    26 YHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLXXXXXX 85
             + T+  L  I+ +TR+RVVDN  +G       +PPR I +YN++ +G +GD++L      
Sbjct:    23 FSTSGSLSAIQKMTRVRVVDNSALGNTPYH--RPPRCIHVYNKSGVGKVGDQILLAIRGQ 80

Query:    86 XXXXXXXXXXXHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLR 133
                              PK D+NNVVLI+D+G P+GTRI +PIP+ LR
Sbjct:    81 KKKALIVGHRMPGSRMTPKFDSNNVVLIEDNGNPVGTRIKIPIPTSLR 128

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

MGI|MGI:1333864 Mrpl14 "mitochondrial ribosomal protein L14" [Mus musculus (taxid:10090)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 41/108 (37%), Positives = 63/108 (58%)

Query:    26 YHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLXXXXXX 85
             + T+  L  ++ +TR+RVVDN  +G  +    +PPR I +YN++ +G +GD++L      
Sbjct:    23 FSTSGSLSAVQKMTRVRVVDNSALG--STPYHRPPRCIHVYNKSGVGKVGDQILLAIRGQ 80

Query:    86 XXXXXXXXXXXHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLR 133
                              PK D+NNVVLI+D+G P+GTRI +PIP+ LR
Sbjct:    81 KKKALIVGHRMPGSRMTPKFDSNNVVLIEDNGNPVGTRIKIPIPTSLR 128

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|Q1JQ99 MRPL14 "39S ribosomal protein L14, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 45/118 (38%), Positives = 64/118 (54%)

Query:    26 YHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLXXXXXX 85
             + TT  L  I+ +TR+RVVDN  +G       +PPR I +YN+  +G +GD++L      
Sbjct:    23 FSTTGSLGAIQKMTRVRVVDNSALGNTPYH--RPPRCIHVYNKNGVGKVGDRILLAIKGQ 80

Query:    86 XXXXXXXXXXXHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSK 143
                              P+ D+NNVVLI+D+G P+GTRI  PIP+ LR   +E   SK
Sbjct:    81 KKKALIVGHRMPGPTMTPRFDSNNVVLIEDNGNPVGTRIKTPIPTSLRQ--REGEFSK 136

GO:0005739 "mitochondrion" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|J9NW30 MRPL14 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 44/118 (37%), Positives = 64/118 (54%)

Query:    26 YHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLXXXXXX 85
             + TT     I+ +TR+RVVDN  +G       +PPR I +YN++ +G +GD++L      
Sbjct:    23 FSTTGSFSAIQKMTRVRVVDNSALGNTPYH--RPPRCIHVYNKSGVGKVGDRILLAIKGQ 80

Query:    86 XXXXXXXXXXXHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSK 143
                              P+ D+NNVVLI+D+G P+GTRI  PIP+ LR   +E   SK
Sbjct:    81 KKKALIVGHRMPGPQMTPRFDSNNVVLIEDNGNPVGTRIKTPIPTSLRQ--REGEFSK 136

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

ZFIN|ZDB-GENE-040426-1066 mrpl14 "mitochondrial ribosomal protein L14" [Danio rerio (taxid:7955)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 40/101 (39%), Positives = 57/101 (56%)

Query:    35 IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLXXXXXXXXXXXXXXX 94
             I+ LTR+RVVDN  +G       +PP+VI +YN+  +G +GD+VL               
Sbjct:    28 IQKLTRVRVVDNSTLGNAH--HHRPPKVIHVYNKNGVGKVGDRVLLAIKGQKKKAIIVGH 85

Query:    95 XXHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTI 135
                     P+ D+NNVVLI+D+G P GTRI  P+P+ LR +
Sbjct:    86 KMPGARMTPRFDSNNVVLIEDNGNPTGTRIKAPLPTHLRKL 126

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|Q6P1L8 MRPL14 "39S ribosomal protein L14, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 40/108 (37%), Positives = 58/108 (53%)

Query:    26 YHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLXXXXXX 85
             + TT  L  I+ +TR+RVVDN  +G       + PR I +Y +  +G +GD++L      
Sbjct:    23 FSTTGSLSAIQKMTRVRVVDNSALGNSPYH--RAPRCIHVYKKNGVGKVGDQILLAIKGQ 80

Query:    86 XXXXXXXXXXXHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLR 133
                              P+ D+NNVVLI+D+G P+GTRI  PIP+ LR
Sbjct:    81 KKKALIVGHCMPGPRMTPRFDSNNVVLIEDNGNPVGTRIKTPIPTSLR 128


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.132   0.399    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      205       188   0.00087  110 3  11 22  0.46    32
                                                     31  0.42    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  599 (64 KB)
  Total size of DFA:  173 KB (2101 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.00u 0.10s 18.10t   Elapsed:  00:00:02
  Total cpu time:  18.00u 0.10s 18.10t   Elapsed:  00:00:02
  Start:  Thu Aug 15 16:20:03 2013   End:  Thu Aug 15 16:20:05 2013

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	205
pfam00238	122	pfam00238, Ribosomal_L14, Ribosomal protein L14p/L	2e-18
PRK05483	122	PRK05483, rplN, 50S ribosomal protein L14; Validat	7e-10
TIGR01067	122	TIGR01067, rplN_bact, ribosomal protein L14, bacte	2e-08
COG0093	122	COG0093, RplN, Ribosomal protein L14 [Translation,	2e-08
CHL00057	122	CHL00057, rpl14, ribosomal protein L14	1e-06
TIGR03673	131	TIGR03673, rpl14p_arch, 50S ribosomal protein L14P	0.004

>gnl|CDD|201105 pfam00238, Ribosomal_L14, Ribosomal protein L14p/L23e

 Score = 77.1 bits (191), Expect = 2e-18
 Identities = 37/123 (30%), Positives = 54/123 (43%), Gaps = 23/123 (18%)

Query: 35  IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHI--GTIGDKVLVAI---------- 82
           I++ TRL V DN           K  + I +   +      +GD ++V++          
Sbjct: 2   IQVGTRLNVADNSGA--------KKVKCIKVLGGSRKKYAKVGDIIVVSVKKAIPKGKVK 53

Query: 83  KGEKKKGIIVGVKKHQK---PHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEK 139
           KG+  K +IV  KK  +       + D N VVLI++ G P GTRI  P+   LR     K
Sbjct: 54  KGDVVKAVIVRTKKEVRRKDGSYIRFDDNAVVLINNKGEPKGTRIFGPVARELRAKKFPK 113

Query: 140 TLS 142
            LS
Sbjct: 114 ILS 116

Length = 122

>gnl|CDD|180117 PRK05483, rplN, 50S ribosomal protein L14; Validated

 Score = 54.4 bits (132), Expect = 7e-10
 Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 27/116 (23%)

Query: 35  IKLLTRLRVVDNCEIG-RQAMAEGKPPRVIAIYNQTH--IGTIGDKVLVAIK-----GEK 86
           I+  TRL V DN   G ++ M        I +   +     +IGD ++V++K     G+ 
Sbjct: 2   IQQETRLNVADNS--GAKEVM-------CIKVLGGSKRRYASIGDVIVVSVKEAIPRGKV 52

Query: 87  KKG-----IIVGVKKHQK----PHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLR 133
           KKG     ++V  KK  +     +I + D N  VL+++ G P GTRI  P+   LR
Sbjct: 53  KKGDVVKAVVVRTKKGVRRPDGSYI-RFDDNAAVLLNNDGEPRGTRIFGPVARELR 107

Length = 122

>gnl|CDD|130139 TIGR01067, rplN_bact, ribosomal protein L14, bacterial/organelle

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 36/116 (31%), Positives = 52/116 (44%), Gaps = 27/116 (23%)

Query: 35  IKLLTRLRVVDNCEIGRQAM---AEGKPPRVIAIYNQTHIGTIGDKVLVAIK-----GEK 86
           I+  +RL V DN    ++       G   R  A        T+GD ++V +K     G+ 
Sbjct: 2   IQQQSRLNVADNSG-AKKVQCIKVLGGSRRRYA--------TVGDVIVVVVKDAIPNGKV 52

Query: 87  KKG-----IIVGVKKHQK----PHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLR 133
           KKG     +IV  KK  +     +I + D N  VLI+ +  P GTRI  P+   LR
Sbjct: 53  KKGDVVKAVIVRTKKGVRRKDGSYI-RFDDNACVLINKNKEPRGTRIFGPVARELR 107

This model distinguishes bacterial and most organellar examples of ribosomal protein L14 from all archaeal and eukaryotic forms [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 122

>gnl|CDD|223171 COG0093, RplN, Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]

 Score = 50.3 bits (121), Expect = 2e-08
 Identities = 37/117 (31%), Positives = 53/117 (45%), Gaps = 27/117 (23%)

Query: 35  IKLLTRLRVVDNCEIGRQAM---AEGKPPRVIAIYNQTHIGTIGDKVLVAIK-----GEK 86
           I++ TRL V DN    ++ M     G   R  A         +GD ++V++K     G  
Sbjct: 2   IQVQTRLNVADNSG-AKEVMCIKVLGGSRRRYA--------GVGDIIVVSVKKAIPRGMV 52

Query: 87  KKG-----IIVGVKKHQK----PHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRT 134
           KKG     ++V  KK  +     +I K D N  V+I+  G P GTRI  P+   LR 
Sbjct: 53  KKGDVVKAVVVRTKKEVRRPDGSYI-KFDDNAAVIINPDGEPRGTRIFGPVARELRE 108

Length = 122

>gnl|CDD|176997 CHL00057, rpl14, ribosomal protein L14

 Score = 45.6 bits (109), Expect = 1e-06
 Identities = 36/113 (31%), Positives = 50/113 (44%), Gaps = 21/113 (18%)

Query: 35  IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAI-----------K 83
           I+  T L V DN    R+ M      RV+   N+ +   IGD V++A+           +
Sbjct: 2   IQPQTYLNVADNSG-ARKLMC----IRVLGASNRKY-AHIGD-VIIAVVKEAVPNMPLKR 54

Query: 84  GEKKKGIIVGVKKHQKPH---IPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLR 133
            E  + +IV   K  K     I + D N  V+ID  G P GTR+  PI   LR
Sbjct: 55  SEVVRAVIVRTCKELKRDNGMIIRFDDNAAVVIDQEGNPKGTRVFGPIARELR 107

Length = 122

>gnl|CDD|132712 TIGR03673, rpl14p_arch, 50S ribosomal protein L14P

 Score = 35.8 bits (83), Expect = 0.004
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 10/66 (15%)

Query: 74  IGDKVLVAIKG---EKKKGIIVGVKKHQKPHIPKTD-------TNNVVLIDDSGTPLGTR 123
           +GD V+V++K    E +K +   V   Q+    + D        N VV++   G P GT 
Sbjct: 48  VGDMVVVSVKKGTPEMRKQVFKAVVVRQRKEYRRPDGTRVKFEDNAVVIVTPDGEPKGTE 107

Query: 124 IHVPIP 129
           I  P+ 
Sbjct: 108 IKGPVA 113

Part of the 50S ribosomal subunit. Forms a cluster with proteins L3 and L24e, part of which may contact the 16S rRNA in 2 intersubunit bridges. Length = 131

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	205
COG0093	122	RplN Ribosomal protein L14 [Translation, ribosomal	100.0
CHL00057	122	rpl14 ribosomal protein L14	100.0
PRK05483	122	rplN 50S ribosomal protein L14; Validated	100.0
TIGR01067	122	rplN_bact ribosomal protein L14, bacterial/organel	100.0
TIGR03673	131	rpl14p_arch 50S ribosomal protein L14P. Part of th	100.0
PTZ00054	139	60S ribosomal protein L23; Provisional	100.0
PRK08571	132	rpl14p 50S ribosomal protein L14P; Reviewed	100.0
PF00238	122	Ribosomal_L14: Ribosomal protein L14p/L23e; InterP	100.0
PTZ00320	188	ribosomal protein L14; Provisional	100.0
KOG3441|consensus	149		100.0
KOG0901|consensus	145		99.94

>COG0093 RplN Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.9e-42  Score=276.17  Aligned_cols=107  Identities=30%  Similarity=0.462  Sum_probs=101.6

Q ss_pred             cccccCeEEEEeCChhcccccccCCCcEEEEEcc--CCcccccCCEEEEEEc----------CeeeeEEEEeEEec---c
Q psy4063          34 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN--QTHIGTIGDKVLVAIK----------GEKKKGIIVGVKKH---Q   98 (205)
Q Consensus        34 MIqk~T~L~VaDNSGagk~~~~~~K~v~CI~V~~--k~r~A~IGD~IvVSVK----------GeV~kAVIVRtKk~---~   98 (205)
                      |||.+|+|+|+|||||        |.++||+|++  ++++|++||+|++|||          |++++|||||||++   .
T Consensus         1 miq~~t~l~vADNSGA--------k~v~~I~V~gg~~r~~A~vGD~ivvsVKka~P~~~vKkg~V~~AViVRtkk~~rR~   72 (122)
T COG0093           1 MIQVQTRLNVADNSGA--------KEVMCIKVLGGSRRRYAGVGDIIVVSVKKAIPRGMVKKGDVVKAVVVRTKKEVRRP   72 (122)
T ss_pred             CcccccEEEEccCCCC--------cEEEEEEEeccccccccCCCCEEEEEEeeccCCcceeccceEEEEEEEeCCceEcC
Confidence            8999999999999998        7889999998  5669999999999998          78999999999998   4


Q ss_pred             CCCeeeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchhhhhhhHHHH
Q psy4063          99 KPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTNTLNSINNIS  158 (205)
Q Consensus        99 dG~~ikFddNavVLLn~kg~PlGTRI~GPVp~ELR~k~~~~~~~~~~~~~KIlSlA~~ii  158 (205)
                      ||++++|||||+||+|++|+|+||||||||++|+|++          +|+||+|||+.++
T Consensus        73 DGs~i~FddNA~Viin~~g~P~GtrI~GPVaRElr~~----------~~~kI~SlA~eVv  122 (122)
T COG0093          73 DGSYIKFDDNAAVIINPDGEPRGTRIFGPVARELRER----------GFMKIASLAPEVV  122 (122)
T ss_pred             CCCEEEeCCceEEEECCCCCcccceEecchhHHHHhc----------CCceeeecceecC
Confidence            8999999999999999999999999999999999999          9999999999764

>CHL00057 rpl14 ribosomal protein L14

Probab=100.00  E-value=2.6e-42  Score=275.27  Aligned_cols=107  Identities=29%  Similarity=0.433  Sum_probs=101.2

Q ss_pred             cccccCeEEEEeCChhcccccccCCCcEEEEEcc--CCcccccCCEEEEEEc----------CeeeeEEEEeEEec---c
Q psy4063          34 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN--QTHIGTIGDKVLVAIK----------GEKKKGIIVGVKKH---Q   98 (205)
Q Consensus        34 MIqk~T~L~VaDNSGagk~~~~~~K~v~CI~V~~--k~r~A~IGD~IvVSVK----------GeV~kAVIVRtKk~---~   98 (205)
                      |||.+|+|+|+|||||        |.++||++|+  ++++|++||+|+|+||          |++++|||||||++   .
T Consensus         1 MIq~~t~l~v~DNSGa--------k~v~cI~v~~~~~~~~a~vGD~IvvsVk~~~~~~k~kkg~v~kAvIVrtk~~~~r~   72 (122)
T CHL00057          1 MIQPQTYLNVADNSGA--------RKLMCIRVLGASNRKYAHIGDVIIAVVKEAVPNMPLKRSEVVRAVIVRTCKELKRD   72 (122)
T ss_pred             CCCcCCEEEEeECCCC--------cEEEEEEEeCCCCCccccCCCEEEEEEEeccCCCceecCCEEEEEEEEeccccCcC
Confidence            9999999999999998        8899999997  5678999999999997          69999999999997   4


Q ss_pred             CCCeeeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchhhhhhhHHHH
Q psy4063          99 KPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTNTLNSINNIS  158 (205)
Q Consensus        99 dG~~ikFddNavVLLn~kg~PlGTRI~GPVp~ELR~k~~~~~~~~~~~~~KIlSlA~~ii  158 (205)
                      ||++++|||||+||+|++++|+||||+||||+|||++          +|+||+|||+.++
T Consensus        73 dG~~i~F~~Na~VLin~~~~p~GTrI~Gpv~~elr~k----------~~~Ki~sla~~vi  122 (122)
T CHL00057         73 NGMIIRFDDNAAVVIDQEGNPKGTRVFGPIARELREK----------NFTKIVSLAPEVL  122 (122)
T ss_pred             CCcEEEcCCceEEEECCCCCEeEeEEEccchHHHhhc----------CCeEEEecccccC
Confidence            8999999999999999999999999999999999998          9999999999764

>PRK05483 rplN 50S ribosomal protein L14; Validated

Probab=100.00  E-value=3.2e-42  Score=274.64  Aligned_cols=107  Identities=30%  Similarity=0.470  Sum_probs=101.3

Q ss_pred             cccccCeEEEEeCChhcccccccCCCcEEEEEcc--CCcccccCCEEEEEEc----------CeeeeEEEEeEEec---c
Q psy4063          34 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN--QTHIGTIGDKVLVAIK----------GEKKKGIIVGVKKH---Q   98 (205)
Q Consensus        34 MIqk~T~L~VaDNSGagk~~~~~~K~v~CI~V~~--k~r~A~IGD~IvVSVK----------GeV~kAVIVRtKk~---~   98 (205)
                      |||.+|+|+|+|||||        +.++||++|+  ++++|++||+|+|+||          |++++|||||||++   .
T Consensus         1 MIq~~t~l~v~DNSGa--------k~v~cI~v~g~~~~~~a~iGD~I~vsVkk~~~~~~~kkg~v~~AvIVrtkk~~~r~   72 (122)
T PRK05483          1 MIQQETRLNVADNSGA--------KEVMCIKVLGGSKRRYASIGDVIVVSVKEAIPRGKVKKGDVVKAVVVRTKKGVRRP   72 (122)
T ss_pred             CCCCCCEEEEeECCCC--------CEEEEEEEeCCCCCCccccCCEEEEEEEEcCCCCcccCCCEeeEEEEEeccceecC
Confidence            9999999999999998        8899999997  5678999999999997          89999999999998   5


Q ss_pred             CCCeeeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchhhhhhhHHHH
Q psy4063          99 KPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTNTLNSINNIS  158 (205)
Q Consensus        99 dG~~ikFddNavVLLn~kg~PlGTRI~GPVp~ELR~k~~~~~~~~~~~~~KIlSlA~~ii  158 (205)
                      ||++++|||||+||||++++|+||||+||||+|||++          +|+||+|||+.++
T Consensus        73 dG~~i~F~dNavVLin~~~~p~GTrI~Gpv~~elr~~----------~~~Ki~sla~~v~  122 (122)
T PRK05483         73 DGSYIRFDDNAAVLLNNDGEPRGTRIFGPVARELRDK----------KFMKIVSLAPEVL  122 (122)
T ss_pred             CCCEEEcCCCEEEEECCCCCEeEeEEeccchHHHhhc----------CCcEEEecccccC
Confidence            8999999999999999999999999999999999987          8999999999764

>TIGR01067 rplN_bact ribosomal protein L14, bacterial/organelle

Probab=100.00  E-value=5.3e-42  Score=273.22  Aligned_cols=107  Identities=30%  Similarity=0.461  Sum_probs=101.4

Q ss_pred             cccccCeEEEEeCChhcccccccCCCcEEEEEcc--CCcccccCCEEEEEEc----------CeeeeEEEEeEEec---c
Q psy4063          34 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN--QTHIGTIGDKVLVAIK----------GEKKKGIIVGVKKH---Q   98 (205)
Q Consensus        34 MIqk~T~L~VaDNSGagk~~~~~~K~v~CI~V~~--k~r~A~IGD~IvVSVK----------GeV~kAVIVRtKk~---~   98 (205)
                      |||.+|+|+|+|||||        +.++||++|+  ++++|.+||+|+|+||          ||+++|||||||++   .
T Consensus         1 MIq~~t~l~v~DNSGa--------k~v~cI~v~~~~~~~~a~iGD~I~vsVk~~~~~~~~kkg~v~~AvIVrtkk~~~r~   72 (122)
T TIGR01067         1 MIQQQSRLNVADNSGA--------KKVQCIKVLGGSRRRYATVGDVIVVVVKDAIPNGKVKKGDVVKAVIVRTKKGVRRK   72 (122)
T ss_pred             CCCcCCEEEEeECCCC--------cEEEEEEEeCCCCCCccccCCEEEEEEEEcCCCCccccccEEEEEEEEeecceEeC
Confidence            9999999999999998        8899999997  4578999999999998          89999999999998   4


Q ss_pred             CCCeeeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchhhhhhhHHHH
Q psy4063          99 KPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTNTLNSINNIS  158 (205)
Q Consensus        99 dG~~ikFddNavVLLn~kg~PlGTRI~GPVp~ELR~k~~~~~~~~~~~~~KIlSlA~~ii  158 (205)
                      ||++++|||||+||+|++++|+||||+||||+|||++          +|+||+|||+.|+
T Consensus        73 dG~~i~F~~Na~VLin~~~~p~GTrI~Gpv~~elr~~----------~~~Ki~sla~~i~  122 (122)
T TIGR01067        73 DGSYIRFDDNACVLINKNKEPRGTRIFGPVARELRDK----------GFMKIVSLAPEVI  122 (122)
T ss_pred             CCCEEECCCceEEEECCCCCEeeeEEEccchHHHhhc----------CCceeeeccchhC
Confidence            8999999999999999999999999999999999998          8999999999864

This model distinguishes bacterial and most organellar examples of ribosomal protein L14 from all archaeal and eukaryotic forms.

>TIGR03673 rpl14p_arch 50S ribosomal protein L14P

Probab=100.00  E-value=1.8e-41  Score=273.71  Aligned_cols=110  Identities=23%  Similarity=0.302  Sum_probs=100.7

Q ss_pred             cccccccccCeEEEEeCChhcccccccCCCcEEEEEcc-----CC-cccccCCEEEEEEc-------CeeeeEEEEeEEe
Q psy4063          30 PCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN-----QT-HIGTIGDKVLVAIK-------GEKKKGIIVGVKK   96 (205)
Q Consensus        30 ~~~~MIqk~T~L~VaDNSGagk~~~~~~K~v~CI~V~~-----k~-r~A~IGD~IvVSVK-------GeV~kAVIVRtKk   96 (205)
                      ....|||.+|+|+|+|||||        |.++||+|++     ++ ++|++||+|+|+||       ||+++|||||||+
T Consensus         6 ~~~~mIq~~t~L~VaDNSGa--------k~v~cI~vl~~~g~~~r~~~a~iGD~IvvsVK~~~p~~kg~v~kAVIVRtkk   77 (131)
T TIGR03673         6 GITRALPVGSLLVCADNTGA--------KEVEVISVKGYKGVKRRLPCAGVGDMVVVSVKKGTPEMRKQVFKAVVVRQRK   77 (131)
T ss_pred             ccceeeccCCEEEEeeCCCC--------ceEEEEEEeeeCCCcccCCccccCCEEEEEEEECCccccCCEeEEEEEEeCc
Confidence            35679999999999999998        8899999993     23 56999999999998       8999999999999


Q ss_pred             c---cCCCeeeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchhhhhhhHHHH
Q psy4063          97 H---QKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTNTLNSINNIS  158 (205)
Q Consensus        97 ~---~dG~~ikFddNavVLLn~kg~PlGTRI~GPVp~ELR~k~~~~~~~~~~~~~KIlSlA~~ii  158 (205)
                      +   .||++++|||||+||||++++|+||||+||||+|| ++          +|+||+|||+.++
T Consensus        78 ~~~R~dGs~i~FddNa~VLin~~~~P~GTRI~GpV~rEl-~~----------~~~Ki~SlA~~vi  131 (131)
T TIGR03673        78 EYRRPDGTRVKFEDNAVVIVTPDGEPKGTEIKGPVAREA-AE----------RWPKIASIASIIV  131 (131)
T ss_pred             ceecCCCcEEEeCCcEEEEECCCCCEeeeEEEccchHHH-Hh----------CccHheeccchhC
Confidence            8   48999999999999999999999999999999999 45          6999999999874

Part of the 50S ribosomal subunit. Forms a cluster with proteins L3 and L24e, part of which may contact the 16S rRNA in 2 intersubunit bridges.

>PTZ00054 60S ribosomal protein L23; Provisional

Probab=100.00  E-value=3.6e-41  Score=274.39  Aligned_cols=110  Identities=17%  Similarity=0.209  Sum_probs=100.8

Q ss_pred             cccccccccCeEEEEeCChhcccccccCCCcEEEEEcc----CC--cccccCCEEEEEEc-------CeeeeEEEEeEEe
Q psy4063          30 PCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN----QT--HIGTIGDKVLVAIK-------GEKKKGIIVGVKK   96 (205)
Q Consensus        30 ~~~~MIqk~T~L~VaDNSGagk~~~~~~K~v~CI~V~~----k~--r~A~IGD~IvVSVK-------GeV~kAVIVRtKk   96 (205)
                      ....|||.+|+|+|+|||||        |.++||+|++    ++  ++|++||+|+||||       |++++|||||||+
T Consensus        14 ~~~~mIq~~t~L~vaDNSGA--------k~v~cI~vlg~~g~~~r~~~a~iGD~IvvsVKk~~p~~kg~V~kAVIVRtKk   85 (139)
T PTZ00054         14 RVTLGLPVGAVVNCADNSGA--------KNLYIIAVKGIHGRLNRLPSASLGDMVLATVKKGKPELRKKVLNAVIIRQRK   85 (139)
T ss_pred             ccceeecCCCEEEEeeCCCc--------cEEEEEEEeccCcCCccCcccccCCEEEEEEEECCCcccCCEeeEEEEEECc
Confidence            34669999999999999998        8899999996    23  46999999999997       8999999999999


Q ss_pred             c---cCCCeeeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchhhhhhhHHHH
Q psy4063          97 H---QKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTNTLNSINNIS  158 (205)
Q Consensus        97 ~---~dG~~ikFddNavVLLn~kg~PlGTRI~GPVp~ELR~k~~~~~~~~~~~~~KIlSlA~~ii  158 (205)
                      +   .||++++|||||+||||++++|+||||+||||+|| ++          +|+||+|||+.++
T Consensus        86 ~~rR~dGs~i~F~dNA~VLin~~~~p~GTRI~GpV~rEl-~~----------~~~KI~SLA~~vi  139 (139)
T PTZ00054         86 AWRRKDGVFIYFEDNAGVIVNPKGEMKGSAITGPVAKEC-AD----------LWPKISSAAPAIV  139 (139)
T ss_pred             ceEcCCCcEEEeCCcEEEEECCCCCEeeeEEeCchhHHH-Hh----------CccHhhccccccC
Confidence            8   58999999999999999999999999999999999 44          5999999999864

>PRK08571 rpl14p 50S ribosomal protein L14P; Reviewed

Probab=100.00  E-value=4.4e-41  Score=271.75  Aligned_cols=109  Identities=22%  Similarity=0.324  Sum_probs=99.9

Q ss_pred             ccccccccCeEEEEeCChhcccccccCCCcEEEEEcc----CC--cccccCCEEEEEEc-------CeeeeEEEEeEEec
Q psy4063          31 CLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN----QT--HIGTIGDKVLVAIK-------GEKKKGIIVGVKKH   97 (205)
Q Consensus        31 ~~~MIqk~T~L~VaDNSGagk~~~~~~K~v~CI~V~~----k~--r~A~IGD~IvVSVK-------GeV~kAVIVRtKk~   97 (205)
                      ...|||.+|+|+|+|||||        |.++||+|++    .+  ++|.+||+|+|+||       |++++|||||||++
T Consensus         8 ~~~mIq~~T~L~VaDNSGA--------k~v~cI~vlg~~g~~~r~~~a~iGD~IvvsVK~~~p~~kg~v~kAVIVRtkk~   79 (132)
T PRK08571          8 VTRGLPVGARLVCADNTGA--------KEVEIISVKGYKGVKRRLPKAGVGDMVVVSVKKGTPEMRKQVLRAVVVRQRKE   79 (132)
T ss_pred             ccceecCCCEEEEeeCCCC--------CeEEEEEEeccCCCCccCCccccCCEEEEEEEECCCcccCCEeEEEEEEeccc
Confidence            4569999999999999998        8899999985    23  45999999999998       79999999999998


Q ss_pred             ---cCCCeeeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchhhhhhhHHHH
Q psy4063          98 ---QKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTNTLNSINNIS  158 (205)
Q Consensus        98 ---~dG~~ikFddNavVLLn~kg~PlGTRI~GPVp~ELR~k~~~~~~~~~~~~~KIlSlA~~ii  158 (205)
                         .||++++|||||+||||++++|+||||+||||+|| ++          +|+||+|||+.++
T Consensus        80 ~~R~dGs~i~F~dNa~VLin~~~~p~GTRI~GpV~~El-~~----------~~~Ki~sLA~~vi  132 (132)
T PRK08571         80 YRRPDGTRVKFEDNAAVIVTPEGTPKGTEIKGPVAREA-AE----------RWPKIASIASIIV  132 (132)
T ss_pred             eEcCCCcEEEeCCcEEEEECCCCCEeeeEEeccchHHH-hh----------CCchheeccchhC
Confidence               58999999999999999999999999999999999 44          5999999999864

>PF00238 Ribosomal_L14: Ribosomal protein L14p/L23e; InterPro: IPR000218 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=4.7e-41  Score=266.76  Aligned_cols=106  Identities=35%  Similarity=0.545  Sum_probs=98.7

Q ss_pred             cccccCeEEEEeCChhcccccccCCCcEEEEEcc--CCcccccCCEEEEEEc----------CeeeeEEEEeEEec---c
Q psy4063          34 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN--QTHIGTIGDKVLVAIK----------GEKKKGIIVGVKKH---Q   98 (205)
Q Consensus        34 MIqk~T~L~VaDNSGagk~~~~~~K~v~CI~V~~--k~r~A~IGD~IvVSVK----------GeV~kAVIVRtKk~---~   98 (205)
                      |||.+|+|+|+|||||        +.++||++|+  ++++|++||+|+||||          |++++|||||||++   .
T Consensus         1 MIq~~t~L~v~DNSGa--------k~v~cI~v~~~~~~~~a~vGD~I~vsVkk~~~~~~vkkg~v~~avIVrtk~~~~r~   72 (122)
T PF00238_consen    1 MIQKGTILKVADNSGA--------KKVKCIKVLGGKRRKYASVGDIIVVSVKKGRPKSKVKKGQVYKAVIVRTKKPIRRK   72 (122)
T ss_dssp             -BETTEEEEESBSSSE--------EEEEEEEETSSTTTSEE-TTSEEEEEEEEE-SSSSSTTTEEEEEEEEECSSEEETT
T ss_pred             CCCCCCEEEEeeCCCC--------cEEEEEEEeCCcCccccccceEEEEEEeecccCccccccceEEEEEEEEeEEEEEe
Confidence            9999999999999998        7889999997  5678999999999993          89999999999998   6


Q ss_pred             CCCeeeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchhhhhhhHHH
Q psy4063          99 KPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTNTLNSINNI  157 (205)
Q Consensus        99 dG~~ikFddNavVLLn~kg~PlGTRI~GPVp~ELR~k~~~~~~~~~~~~~KIlSlA~~i  157 (205)
                      ||++++|||||+||+|++++|+||||+||||+|+|++          +|+||+|||+.|
T Consensus        73 dg~~i~F~~Na~VLln~~~~p~GtrI~Gpv~~elr~~----------~~~ki~sla~~i  121 (122)
T PF00238_consen   73 DGSFIKFDDNAVVLLNKKGNPLGTRIFGPVPRELRKK----------KFPKILSLASRI  121 (122)
T ss_dssp             TSEEEEESSEEEEEEETTSSBSSSSBCSEEEHHHHHT----------TSHHHHHHSSCE
T ss_pred             CCcEEEeCCccEEEEcCCCCEeeeEEEeeehHHhhHc----------CCchHHhhcccc
Confidence            9999999999999999999999999999999999988          899999999865

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L14 is one of the proteins from the large ribosomal subunit. In eubacteria, L14 is known to bind directly to the 23S rRNA. It belongs to a family of ribosomal proteins, which have been grouped on the basis of sequence similarities []. Based on amino-acid sequence homology, it is predicted that ribosomal protein L14 is a member of a recently identified family of structurally related RNA-binding proteins []. L14 is a protein of 119 to 137 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3IZR_M 4A1C_J 4A1E_J 4A1A_J 4A17_J 1VSP_I 3D5D_O 1VSA_I 3MRZ_K 3F1F_O ....

>PTZ00320 ribosomal protein L14; Provisional

Probab=100.00  E-value=1.6e-37  Score=262.50  Aligned_cols=104  Identities=18%  Similarity=0.164  Sum_probs=98.4

Q ss_pred             cccCeEEEEeCChhcccccccCCCcEEEEEccCCcccccCCE----EEEEEc----------------CeeeeEEEEeEE
Q psy4063          36 KLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDK----VLVAIK----------------GEKKKGIIVGVK   95 (205)
Q Consensus        36 qk~T~L~VaDNSGagk~~~~~~K~v~CI~V~~k~r~A~IGD~----IvVSVK----------------GeV~kAVIVRtK   95 (205)
                      .-+|+|+|+|||||        |.++||+|+.++++|.+||+    |+||||                |+|++|||||||
T Consensus        61 ~~qT~L~VaDNSGA--------K~V~CIkVl~~rr~A~IGDi~~~~IvVsVKka~P~~~~~~~~kVKKG~V~kAVIVRTK  132 (188)
T PTZ00320         61 SDQVKLHCVDNTNC--------KHVRLISKATAERFAHCRVFPAVAHRVSVQRFKSGRGEVSRHRVKPGNIYWVCLLSRR  132 (188)
T ss_pred             CCCcEEEEEeCCCC--------cEEEEEEEecCCCceeeccccCceEEEEEeecccCccccccCceecCCEEEEEEEEEC
Confidence            36899999999998        88999999988899999999    999997                699999999999


Q ss_pred             ec---cCCCeeeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchhhhhhhHHH
Q psy4063          96 KH---QKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTNTLNSINNI  157 (205)
Q Consensus        96 k~---~dG~~ikFddNavVLLn~kg~PlGTRI~GPVp~ELR~k~~~~~~~~~~~~~KIlSlA~~i  157 (205)
                      ++   .||++++|||||+||||++++|+||||+|||++|||++          +|+||+|||+-+
T Consensus       133 K~irR~DGs~IrFDdNAaVLIN~qgePlGTRIfGPVaRELR~k----------~f~KIvSLAp~~  187 (188)
T PTZ00320        133 QTNTRMSGLQTNFDRNTCILMNDQRVPLGTRVMYCAGRHVNHK----------YHLKAVVLANFF  187 (188)
T ss_pred             cccCCCCCCEEEeCCcEEEEECCCCCEeeeEEecchhHHHhhc----------CCceeeeccccc
Confidence            98   48999999999999999999999999999999999999          999999999864

>KOG3441|consensus

Probab=100.00  E-value=3e-36  Score=244.34  Aligned_cols=143  Identities=42%  Similarity=0.664  Sum_probs=133.4

Q ss_pred             CCcccCcchhc-ccccccccccccccccccCeEEEEeCChhcccccccCCCcEEEEEccCCcccccCCEEEEEEcCeeee
Q psy4063          10 PSYQTTPSALK-LCSDLYHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGEKKK   88 (205)
Q Consensus        10 ~~~~~~~~~~~-~~~~~~st~~~~~MIqk~T~L~VaDNSGagk~~~~~~K~v~CI~V~~k~r~A~IGD~IvVSVKGeV~k   88 (205)
                      ++++||--.+. +...++.|+..+..|++.|+|+|+|||..|++++.+++.++||+||+++..+.+||.|+|+||||+.+
T Consensus         6 ~l~~p~t~~~~~~s~~~lhtt~s~~~I~k~tRlrVVDNSaLGk~a~~~gr~PrCIHVYkkrgvg~~GDkiLvAIkGQmkK   85 (149)
T KOG3441|consen    6 GLWGPFTCVSRVLSHHCLHTTGSLMGIHKRTRLRVVDNSALGKEADTTGRLPRCIHVYKKRGVGELGDKILVAIKGQMKK   85 (149)
T ss_pred             hcccceeeehhhhhhhHhhcchHHHhhhhhheEEEecchhhcccccccCCCCceEEEEecccccccccEEEEEEecceee
Confidence            56777765555 67778999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeEEeccCCCeeeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchhhhhhhHHHH
Q psy4063          89 GIIVGVKKHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTNTLNSINNIS  158 (205)
Q Consensus        89 AVIVRtKk~~dG~~ikFddNavVLLn~kg~PlGTRI~GPVp~ELR~k~~~~~~~~~~~~~KIlSlA~~ii  158 (205)
                      |+||+.......+.++||+|++||||++|+|+||||..|||..||..      +++++|+|++++|++++
T Consensus        86 a~vVGh~~~~k~~~P~fDsNniVLiddnGnPlGtRI~~PIPT~Lr~~------~~~~~ysKVLAiA~~fv  149 (149)
T KOG3441|consen   86 AYVVGHVHYRKHGVPVFDSNNIVLIDDNGNPLGTRITAPIPTKLRAN------RGNVQYSKVLAIANKFV  149 (149)
T ss_pred             eEEEEeeccCCCCCcccCCCcEEEECCCCCcccceEeccCcHHHHhc------cCCcchhhHHHHHhhcC
Confidence            99999998888999999999999999999999999999999999976      78999999999999864

>KOG0901|consensus

Probab=99.94  E-value=6.9e-27  Score=191.90  Aligned_cols=112  Identities=20%  Similarity=0.278  Sum_probs=101.4

Q ss_pred             ccccccccccccCeEEEEeCChhcccccccCCCcEEEEEccC-C-----cccccCCEEEEEEc------------Ceeee
Q psy4063          27 HTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQ-T-----HIGTIGDKVLVAIK------------GEKKK   88 (205)
Q Consensus        27 st~~~~~MIqk~T~L~VaDNSGagk~~~~~~K~v~CI~V~~k-~-----r~A~IGD~IvVSVK------------GeV~k   88 (205)
                      ...+.+.||+.||.++|+|||||        |.++||+|.+. +     ..|.+||+|+++||            |+++.
T Consensus        12 ~k~r~s~~~~~g~~incaDNSgA--------knL~~isv~g~~Grlnrl~~A~~GD~vva~vKka~~~Pe~r~k~g~~~~   83 (145)
T KOG0901|consen   12 VKFRISLGLPVGAVINCADNSGA--------KNLYCISVKGIKGRLNRLPAAGVGDMVVATVKKAHGKPELRKKVGEVLP   83 (145)
T ss_pred             hhhhhhhccccceEEEecCCCCc--------ceEEEEEEeccccccccccCCCcCCEEEEEEecccCCCccCcEecccce
Confidence            34456899999999999999998        77899999983 2     37999999999998            46799


Q ss_pred             EEEEeEEecc---CCCeeeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchhhhhhhHHH
Q psy4063          89 GIIVGVKKHQ---KPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTNTLNSINNI  157 (205)
Q Consensus        89 AVIVRtKk~~---dG~~ikFddNavVLLn~kg~PlGTRI~GPVp~ELR~k~~~~~~~~~~~~~KIlSlA~~i  157 (205)
                      |+|||+++..   ||++++|+|||+|++|++++|.||||+|||++|++..           |+||+|+|..+
T Consensus        84 avvVr~~k~~~r~dgs~~~f~dnA~v~~~~~~e~~gs~i~G~v~~e~~~~-----------~~kias~A~~i  144 (145)
T KOG0901|consen   84 AVVVRQKKSKRRKDGSIAYFEDNAGVIVNNKGEPKGSAITGPVGKELADL-----------WPKIASLAGLV  144 (145)
T ss_pred             eeEEeeccccccCCCcEEEEcCceEEEEcccCccccceeccccChhHhhh-----------hHHHHhhcccc
Confidence            9999999984   7999999999999999999999999999999999998           99999999865

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	205
1whi_A	122	Ribosomal protein L14; rRNA-binding; 1.50A {Geobac	8e-12
3v2d_O	122	50S ribosomal protein L14; ribosome associated inh	6e-11
3bbo_M	121	Ribosomal protein L14; large ribosomal subunit, sp	3e-10
3r8s_K	122	50S ribosomal protein L14; protein biosynthesis, R	5e-10
1vq8_K	132	50S ribosomal protein L14P; ribosome 50S, protein-	1e-09
3u5e_V	137	L17A, YL32, 60S ribosomal protein L23-A; translati	2e-09

>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus stearothermophilus} SCOP: b.39.1.1 PDB: 1giy_N 1ml5_n* 1c04_D 1yl3_N 2b66_O 2b9n_O 2b9p_O 487d_M Length = 122

 Score = 59.3 bits (143), Expect = 8e-12
 Identities = 27/114 (23%), Positives = 43/114 (37%), Gaps = 23/114 (20%)

Query: 35  IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTH--IGTIGDKVLVAIKGEKKKGIIV 92
           I+  +RL+V DN           +   VI +   +      IGD V+  +K     G++ 
Sbjct: 2   IQQESRLKVADNSG--------AREVLVIKVLGGSGRRYANIGDVVVATVKDATPGGVVK 53

Query: 93  GVK-------------KHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLR 133
             +             +       + D N  V+I D  +P GTRI  P+   LR
Sbjct: 54  KGQVVKAVVVRTKRGVRRPDGSYIRFDENACVIIRDDKSPRGTRIFGPVARELR 107

>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ... Length = 122

 Score = 56.6 bits (136), Expect = 6e-11
 Identities = 23/114 (20%), Positives = 42/114 (36%), Gaps = 23/114 (20%)

Query: 35  IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAI--YNQTHIGTIGDKVLVAIKGEKKKGIIV 92
           I+  T L V DN           +    I +   +     T+GD ++ ++K    +G + 
Sbjct: 2   IQPQTYLEVADNTGA--------RKIMCIRVLKGSNAKYATVGDVIVASVKEAIPRGAVK 53

Query: 93  GVKKHQKPHIP-------------KTDTNNVVLIDDSGTPLGTRIHVPIPSMLR 133
                +   +              + D N  V+I++   P GTR+  P+   LR
Sbjct: 54  EGDVVKAVVVRTKKEIKRPDGSAIRFDDNAAVIINNQLEPRGTRVFGPVARELR 107

>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 121

 Score = 54.7 bits (131), Expect = 3e-10
 Identities = 29/114 (25%), Positives = 38/114 (33%), Gaps = 23/114 (20%)

Query: 35  IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTH--IGTIGDKVLVAIKGEKKKGIIV 92
           I+  T L V DN           +    I I   ++     IGD ++  IK       + 
Sbjct: 2   IQPQTHLNVADNSGA--------RELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLE 53

Query: 93  G-------------VKKHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLR 133
                           K     I + D N  V+ID  G P GTRI   I   LR
Sbjct: 54  RSEVIRAVVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELR 107

>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* 2qao_K* ... Length = 122

 Score = 54.3 bits (130), Expect = 5e-10
 Identities = 25/115 (21%), Positives = 43/115 (37%), Gaps = 24/115 (20%)

Query: 35  IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTH--IGTIGDKVLVAIKGEKKKGIIV 92
           I+  T L V DN           +    I +   +H     +GD + + IK    +G + 
Sbjct: 2   IQEQTMLNVADNSGA--------RRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVK 53

Query: 93  GVK-------------KHQKPHIPKTDTNNVVLIDDSG-TPLGTRIHVPIPSMLR 133
                           +     + + D N  VL++++   P+GTRI  P+   LR
Sbjct: 54  KGDVLKAVVVRTKKGVRRPDGSVIRFDGNACVLLNNNSEQPIGTRIFGPVTRELR 108

>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ... Length = 132

 Score = 53.2 bits (127), Expect = 1e-09
 Identities = 22/115 (19%), Positives = 48/115 (41%), Gaps = 24/115 (20%)

Query: 35  IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIY------NQTHIGTIGDKVLVAIKG---E 85
           ++  + +   DN           +  +VI+++      N+     +GDK+ V++     E
Sbjct: 12  LEKGSLITCADNTG--------ARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTPE 63

Query: 86  KKKGIIVGVKKHQKPHIP-------KTDTNNVVLIDDSGTPLGTRIHVPIPSMLR 133
            ++ ++  V   Q+  I        K + N  V++D++  P GT +  PI   + 
Sbjct: 64  MRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREVA 118

>3u5e_V L17A, YL32, 60S ribosomal protein L23-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_M 1s1i_R 3izs_M* 3j16_I 3o5h_U 3o58_U 3u5i_V 2x7n_C 3jyw_R 2zkr_k 3iz5_M 3izr_M 4a17_J 4a1a_J 4a1c_J 4a1e_J Length = 137

 Score = 53.2 bits (127), Expect = 2e-09
 Identities = 18/115 (15%), Positives = 37/115 (32%), Gaps = 24/115 (20%)

Query: 35  IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIY------NQTHIGTIGDKVLVAIK----- 83
           + +   +   DN           +   +IA+       N+    ++GD V+  +K     
Sbjct: 17  LPVGAIMNCADNSG--------ARNLYIIAVKGSGSRLNRLPAASLGDMVMATVKKGKPE 68

Query: 84  --GEKKKGIIVGVKKHQKP---HIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLR 133
              +    I+V   K  +         + N  V+ +  G   G+ I  P+     
Sbjct: 69  LRKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGKECA 123

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	205
3v2d_O	122	50S ribosomal protein L14; ribosome associated inh	100.0
1whi_A	122	Ribosomal protein L14; rRNA-binding; 1.50A {Geobac	100.0
3r8s_K	122	50S ribosomal protein L14; protein biosynthesis, R	100.0
3bbo_M	121	Ribosomal protein L14; large ribosomal subunit, sp	100.0
1vq8_K	132	50S ribosomal protein L14P; ribosome 50S, protein-	100.0
3j21_J	141	50S ribosomal protein L14P; archaea, archaeal, KIN	100.0
3u5e_V	137	L17A, YL32, 60S ribosomal protein L23-A; translati	100.0

>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ...

Probab=100.00  E-value=1.9e-44  Score=286.86  Aligned_cols=106  Identities=25%  Similarity=0.412  Sum_probs=101.1

Q ss_pred             cccccCeEEEEeCChhcccccccCCCcEEEEEcc--CCcccccCCEEEEEEc----------CeeeeEEEEeEEec---c
Q psy4063          34 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN--QTHIGTIGDKVLVAIK----------GEKKKGIIVGVKKH---Q   98 (205)
Q Consensus        34 MIqk~T~L~VaDNSGagk~~~~~~K~v~CI~V~~--k~r~A~IGD~IvVSVK----------GeV~kAVIVRtKk~---~   98 (205)
                      |||.+|+|+|+|||||        |.++||+||+  ++++|++||+|+++||          ||+++|||||||++   .
T Consensus         1 MIq~~t~L~vaDNSGA--------k~v~cI~Vlg~~~rr~a~iGD~IvvsVK~~~p~~~vKkg~v~~AVIVRtkk~~rR~   72 (122)
T 3v2d_O            1 MIQPQTYLEVADNTGA--------RKIMCIRVLKGSNAKYATVGDVIVASVKEAIPRGAVKEGDVVKAVVVRTKKEIKRP   72 (122)
T ss_dssp             CBCTTCEEEECBSSSE--------EEEEEEEEESTTTCCCBCTTCEEEEEEEEECSSSSSCTTCEEEEEEEECSSCEECT
T ss_pred             CCCCCCEEEEeeCCCC--------cEEEEEEEeCCCCCcccCCCCEEEEEEEEcCCCCccccCCEEEEEEEEeCCccCCC
Confidence            9999999999999998        7789999998  5779999999999998          89999999999998   4


Q ss_pred             CCCeeeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchhhhhhhHHH
Q psy4063          99 KPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTNTLNSINNI  157 (205)
Q Consensus        99 dG~~ikFddNavVLLn~kg~PlGTRI~GPVp~ELR~k~~~~~~~~~~~~~KIlSlA~~i  157 (205)
                      ||++++|||||+||+|++++|+|||||||||+|||++          +|+||+|||+++
T Consensus        73 dG~~i~FddNa~Vlin~~~~p~GTrI~GpVarElr~~----------~~~KI~SlA~~v  121 (122)
T 3v2d_O           73 DGSAIRFDDNAAVIINNQLEPRGTRVFGPVARELREK----------GFMKIVSLAPEV  121 (122)
T ss_dssp             TSCEEEESSCEEEEECTTSCBSSSCBCSCBCTHHHHT----------TCHHHHHHSSCB
T ss_pred             CCcEEEcCCcEEEEECCCCCEeeeEEEccchHHHhhC----------CCchhhcccccc
Confidence            8999999999999999999999999999999999999          999999999864

>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus stearothermophilus} SCOP: b.39.1.1 PDB: 1giy_N 1ml5_n* 1c04_D 1yl3_N 2b66_O 2b9n_O 2b9p_O 487d_M

Probab=100.00  E-value=4.8e-44  Score=284.49  Aligned_cols=106  Identities=29%  Similarity=0.463  Sum_probs=101.1

Q ss_pred             cccccCeEEEEeCChhcccccccCCCcEEEEEcc--CCcccccCCEEEEEEc----------CeeeeEEEEeEEec---c
Q psy4063          34 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN--QTHIGTIGDKVLVAIK----------GEKKKGIIVGVKKH---Q   98 (205)
Q Consensus        34 MIqk~T~L~VaDNSGagk~~~~~~K~v~CI~V~~--k~r~A~IGD~IvVSVK----------GeV~kAVIVRtKk~---~   98 (205)
                      |||.+|+|+|+|||||        |.++||+|++  ++++|++||+|+|+||          |++++|||||||++   .
T Consensus         1 MIq~~t~l~vaDNSGA--------k~v~cI~vlgg~~~r~a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk~~rR~   72 (122)
T 1whi_A            1 MIQQESRLKVADNSGA--------REVLVIKVLGGSGRRYANIGDVVVATVKDATPGGVVKKGQVVKAVVVRTKRGVRRP   72 (122)
T ss_dssp             CBCTTCEEEECBSSSE--------EEEEEEEECSSTTCCCBCTTCEEEEEEEEECTTSSSCTTCEEEEEEEECSSCEECT
T ss_pred             CCCccCEEEEeECCCC--------cEEEEEEEcCCCcccccccCeEEEEEEEEecCCCccccccEEEEEEEEecCceecC
Confidence            9999999999999998        7789999998  4789999999999998          89999999999998   4


Q ss_pred             CCCeeeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchhhhhhhHHH
Q psy4063          99 KPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTNTLNSINNI  157 (205)
Q Consensus        99 dG~~ikFddNavVLLn~kg~PlGTRI~GPVp~ELR~k~~~~~~~~~~~~~KIlSlA~~i  157 (205)
                      ||++++|||||+||+|++|+|+|||||||||+|||++          +|+||+|||+++
T Consensus        73 dG~~i~FddNa~Vlin~~g~p~GTrI~GPVarElr~k----------~~~KI~SlA~~v  121 (122)
T 1whi_A           73 DGSYIRFDENACVIIRDDKSPRGTRIFGPVARELRDK----------DFMKIISLAPEV  121 (122)
T ss_dssp             TSCEECCSSCEEEEECTTSCBSSSCBCSCBCTHHHHT----------TCHHHHHHCSCB
T ss_pred             CCCEEEeCCceEEEECCCCCEeeeEEEccchHHHhhc----------CCcchhhccccc
Confidence            8999999999999999999999999999999999998          899999999865

>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_K 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* ...

Probab=100.00  E-value=9.5e-44  Score=282.88  Aligned_cols=105  Identities=27%  Similarity=0.434  Sum_probs=100.2

Q ss_pred             cccccCeEEEEeCChhcccccccCCCcEEEEEcc--CCcccccCCEEEEEEc----------CeeeeEEEEeEEec---c
Q psy4063          34 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN--QTHIGTIGDKVLVAIK----------GEKKKGIIVGVKKH---Q   98 (205)
Q Consensus        34 MIqk~T~L~VaDNSGagk~~~~~~K~v~CI~V~~--k~r~A~IGD~IvVSVK----------GeV~kAVIVRtKk~---~   98 (205)
                      |||.+|+|+|+|||||        |.++||+||+  ++++|++||+|+++||          |++++|||||||++   .
T Consensus         1 MIq~~t~L~vaDNSGA--------k~v~cI~Vlgg~~r~~a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk~~rR~   72 (122)
T 3r8s_K            1 MIQEQTMLNVADNSGA--------RRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKAVVVRTKKGVRRP   72 (122)
T ss_dssp             CBCTTCEEEECBTTSE--------EEEEEEEECSSSSCCCBCTTCEEEEEEEEECTTSSSCTTCEEEEEEEECSSCEECT
T ss_pred             CCCCCCEEEEccCCCC--------ceEEEEEEeCCCCCCcccCCCEEEEEEEEcCCCCccccCCEEEEEEEEeCCcCCCC
Confidence            9999999999999998        7789999998  5779999999999998          89999999999998   4


Q ss_pred             CCCeeeeCCceEEEECCC-CCccceEEecchhHHHHhhhhhhcccCCCCchhhhhhhHH
Q psy4063          99 KPHIPKTDTNNVVLIDDS-GTPLGTRIHVPIPSMLRTILKEKTLSKGADYTNTLNSINN  156 (205)
Q Consensus        99 dG~~ikFddNavVLLn~k-g~PlGTRI~GPVp~ELR~k~~~~~~~~~~~~~KIlSlA~~  156 (205)
                      ||++++|||||+||||++ |+|+|||||||||+|||++          +|+||+|||++
T Consensus        73 dG~~i~FddNa~Vlin~~~g~p~GTrI~GpVarElR~~----------~~~KI~SlA~~  121 (122)
T 3r8s_K           73 DGSVIRFDGNACVLLNNNSEQPIGTRIFGPVTRELRSE----------KFMKIISLAPE  121 (122)
T ss_dssp             TSCEEEESSCEEEEEETTTEEESCSCBCSCCCGGGGSG----------GGHHHHHSSSC
T ss_pred             CCcEEEcCCceEEEEeCCCCCEeeeEEEccccHHHhHc----------CCchhhccccC
Confidence            899999999999999999 9999999999999999998          89999999975

>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=100.00  E-value=1.5e-43  Score=281.35  Aligned_cols=105  Identities=30%  Similarity=0.423  Sum_probs=100.0

Q ss_pred             cccccCeEEEEeCChhcccccccCCCcEEEEEcc--CCcccccCCEEEEEEc----------CeeeeEEEEeEEec---c
Q psy4063          34 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN--QTHIGTIGDKVLVAIK----------GEKKKGIIVGVKKH---Q   98 (205)
Q Consensus        34 MIqk~T~L~VaDNSGagk~~~~~~K~v~CI~V~~--k~r~A~IGD~IvVSVK----------GeV~kAVIVRtKk~---~   98 (205)
                      |||.+|+|+|+|||||        |.++||+|++  ++++|++||+|+++||          ||+++|||||||++   .
T Consensus         1 MIq~~t~l~vaDNSGA--------k~v~cI~Vlgg~~~r~a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk~~rR~   72 (121)
T 3bbo_M            1 MIQPQTHLNVADNSGA--------RELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRAVVVRTCKELKRD   72 (121)
T ss_dssp             CCCSSCEEEECSSSSE--------EEEEEEEECSSSCCCCCCTTCEEEEEEEEECSSSSSCSSCEEEEEEEECSSCEECT
T ss_pred             CCCccCEEEEeeCCCC--------cEEEEEEEcCCCCccccccCcEEEEEEEEccCCCccccCcEEEEEEEEecCccccC
Confidence            9999999999999998        7789999998  5789999999999998          89999999999998   4


Q ss_pred             CCCeeeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchhhhhhhHHH
Q psy4063          99 KPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTNTLNSINNI  157 (205)
Q Consensus        99 dG~~ikFddNavVLLn~kg~PlGTRI~GPVp~ELR~k~~~~~~~~~~~~~KIlSlA~~i  157 (205)
                      ||++++|||||+||+|++|+|+|||||||||+|||++           |+||+|||+++
T Consensus        73 dG~~i~FddNa~Vlin~~g~p~GTrI~GPVarElr~~-----------~~KI~SlA~~v  120 (121)
T 3bbo_M           73 NGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQK-----------FAKIVSLAPEV  120 (121)
T ss_dssp             TSCEECCSSCEEEECCTTSSCSSSCCCSCCCGGGTTT-----------CHHHHHHSSCC
T ss_pred             CCCEEEeCCceEEEECCCCCEeEeEEEcCcCHHHHhc-----------chHhhhccchh
Confidence            8999999999999999999999999999999999987           99999999865

>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ...

Probab=100.00  E-value=1.5e-42  Score=279.15  Aligned_cols=109  Identities=18%  Similarity=0.337  Sum_probs=101.7

Q ss_pred             cccccccccCeEEEEeCChhcccccccCCCcEEEEEcc----CCcc--cccCCEEEEEE-------cCeeeeEEEEeEEe
Q psy4063          30 PCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN----QTHI--GTIGDKVLVAI-------KGEKKKGIIVGVKK   96 (205)
Q Consensus        30 ~~~~MIqk~T~L~VaDNSGagk~~~~~~K~v~CI~V~~----k~r~--A~IGD~IvVSV-------KGeV~kAVIVRtKk   96 (205)
                      ..+.|||.+|+|+|+|||||        |.++||+|++    ++++  |++||+|+|+|       |||+++|||||||+
T Consensus         7 ~~~~mIq~~t~l~vaDNSGA--------k~v~cI~V~g~~g~~~r~p~a~iGD~IvvsVKk~~p~~kg~v~~AVIVRtkk   78 (132)
T 1vq8_K            7 DVTQGLEKGSLITCADNTGA--------RELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTPEMRRQVLEAVVVRQRK   78 (132)
T ss_dssp             EECCCEETTCEEEECBSSSE--------EEEEEEEETTCCCCTTCCCEECTTCEEEEEEEEECTTTTTCEEEEEEEECSS
T ss_pred             ccccccccCCEEEEeeCCCC--------cEEEEEEEeCccCcccccCCCccCcEEEEEEEecCCCCCCcEEEEEEEEcCC
Confidence            45889999999999999998        7789999998    3567  99999999999       49999999999999


Q ss_pred             c---cCCCeeeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchhhhhhhHHH
Q psy4063          97 H---QKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTNTLNSINNI  157 (205)
Q Consensus        97 ~---~dG~~ikFddNavVLLn~kg~PlGTRI~GPVp~ELR~k~~~~~~~~~~~~~KIlSlA~~i  157 (205)
                      +   .||++++|||||+||||++|+|+||||+||||+|||++           |+||+|||+++
T Consensus        79 ~~rR~dG~~i~FddNA~Vlin~~g~p~GTrI~GPVarElr~~-----------~~KI~SlA~~v  131 (132)
T 1vq8_K           79 PIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREVAQR-----------FGSVASAATMI  131 (132)
T ss_dssp             CEECTTSCEEEESSCEEEEECTTSCBSSSCBCSEECHHHHHH-----------SHHHHTTCSEE
T ss_pred             CcCcCCCcEEEeCCceEEEECCCCCEeEEEEEcCcCHHHHhc-----------ccHhhhccccc
Confidence            8   48999999999999999999999999999999999998           99999999865

>3j21_J 50S ribosomal protein L14P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=1.5e-42  Score=281.85  Aligned_cols=112  Identities=20%  Similarity=0.266  Sum_probs=103.1

Q ss_pred             ccccccccccccCeEEEEeCChhcccccccCCCcEEEEEccC----Cc--ccccCCEEEEEEc-------CeeeeEEEEe
Q psy4063          27 HTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQ----TH--IGTIGDKVLVAIK-------GEKKKGIIVG   93 (205)
Q Consensus        27 st~~~~~MIqk~T~L~VaDNSGagk~~~~~~K~v~CI~V~~k----~r--~A~IGD~IvVSVK-------GeV~kAVIVR   93 (205)
                      +....+.|||.+|+|+|+|||||        |.++||+|++.    ++  +|++||+|+|+||       ||+++|||||
T Consensus        13 ~~~~~~~mIq~~t~L~VaDNSGA--------k~v~cI~Vlg~kg~~~r~~~A~iGD~IvvsVKk~~p~~kg~V~kAVIVR   84 (141)
T 3j21_J           13 SAVRPTRALPVGAYLTVADNSGA--------KVIQIIGVVEYHGTRRRLASAGVGDMVVATVKKGRPDMRHQVVRAVIIR   84 (141)
T ss_dssp             CCSBCCCCBCTTCEEEECSSSSE--------EEEEEEEETTCCCCTTCCCCBCSSCEEEEEEEEECTTTTTCEEEEEEEE
T ss_pred             ccccccceeccCCEEEEccCCCC--------cEEEEEEEcCCCCcccccccCCcCCEEEEEEEecCCCCcCceEEEEEEE
Confidence            34556899999999999999998        77899999982    34  4999999999998       8999999999


Q ss_pred             EEec---cCCCeeeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchhhhhhhHHH
Q psy4063          94 VKKH---QKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTNTLNSINNI  157 (205)
Q Consensus        94 tKk~---~dG~~ikFddNavVLLn~kg~PlGTRI~GPVp~ELR~k~~~~~~~~~~~~~KIlSlA~~i  157 (205)
                      ||++   .||++++|||||+||||++++|+|||||||||+|||++           |+||+|||+.|
T Consensus        85 tkk~~rR~dGs~i~FddNA~VLin~~g~p~GTRI~GPVarElr~~-----------~~KI~SlA~~i  140 (141)
T 3j21_J           85 QRKEYRRLDGMRVKFEDNAAVIVTPEGVPRGTEIRGPVAREAAER-----------WVRIGSIASII  140 (141)
T ss_dssp             CSSCEECTTSCEECCSSCEEEEBCTTSCBCSSCCCSEECHHHHHH-----------CHHHHHHCSEE
T ss_pred             eCCccCCCCCcEEEcCCcEEEEECCCCCEeeeEEEccccHHHHhh-----------chHHhhccccc
Confidence            9998   48999999999999999999999999999999999987           99999999865

>3u5e_V L17A, YL32, 60S ribosomal protein L23-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_M 1s1i_R 3izs_M* 3j16_I 3o5h_U 3o58_U 3u5i_V 4b6a_V 2x7n_C 3jyw_R 2zkr_k 3iz5_M 3izr_M 4a17_J 4a1a_J 4a1c_J 4a1e_J

Probab=100.00  E-value=1.3e-41  Score=275.32  Aligned_cols=109  Identities=16%  Similarity=0.211  Sum_probs=101.5

Q ss_pred             cccccccccCeEEEEeCChhcccccccCCCcEEEEEcc-CC-----cccccCCEEEEEEc-------CeeeeEEEEeEEe
Q psy4063          30 PCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN-QT-----HIGTIGDKVLVAIK-------GEKKKGIIVGVKK   96 (205)
Q Consensus        30 ~~~~MIqk~T~L~VaDNSGagk~~~~~~K~v~CI~V~~-k~-----r~A~IGD~IvVSVK-------GeV~kAVIVRtKk   96 (205)
                      ..+.+||++|+|+|+|||||        |.++||+|++ ++     ++|++||+|+|+||       ||+++|||||||+
T Consensus        12 ~~~~gl~~~t~L~VaDNSGA--------k~v~cI~Vlg~~~r~~r~~~A~iGD~IvvsVK~~~p~~k~~V~~AVIVRtkk   83 (137)
T 3u5e_V           12 RISLGLPVGAIMNCADNSGA--------RNLYIIAVKGSGSRLNRLPAASLGDMVMATVKKGKPELRKKVMPAIVVRQAK   83 (137)
T ss_dssp             CCCCCEETTCEEEECBSSSB--------CEEEEEEETTCCCCTTCCCEECTTCEEEEECSSBCTTTTTSCEEEEEEECCS
T ss_pred             eecccccCCCEEEEeeCCCC--------cEEEEEEEeCCCCcccccccCCcCCEEEEEEEECCCCCCCcEEEEEEEEecc
Confidence            35789999999999999998        7889999998 22     37999999999998       8999999999999


Q ss_pred             c---cCCCeeeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchhhhhhhHHH
Q psy4063          97 H---QKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTNTLNSINNI  157 (205)
Q Consensus        97 ~---~dG~~ikFddNavVLLn~kg~PlGTRI~GPVp~ELR~k~~~~~~~~~~~~~KIlSlA~~i  157 (205)
                      +   .||++++|||||+||||++++|+|||||||||+|||++           |+||+|||+++
T Consensus        84 ~~rR~dG~~i~FddNA~Vlin~~g~p~GTrI~GPVarElr~~-----------~~KI~SlA~~v  136 (137)
T 3u5e_V           84 SWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGKECADL-----------WPRVASNSGVV  136 (137)
T ss_dssp             CEECTTSCEEEESSCEEEEBCTTCCBSSSCBCSCBCHHHHTT-----------CHHHHHTCSSB
T ss_pred             ccCcCCCeEEEcCCceEEEECCCCCEeeeEEEcchhHHHHHH-----------hhHHHhccccc
Confidence            8   48999999999999999999999999999999999987           99999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	205
d1whia_	122	b.39.1.1 (A:) Ribosomal protein L14 {Bacillus stea	5e-17
d2j01o1	122	b.39.1.1 (O:1-122) Ribosomal protein L14 {Thermus	8e-16
d1vqok1	132	b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon	6e-14
d2gyci1	121	b.39.1.1 (I:2-122) Ribosomal protein L14 {Escheric	2e-10

>d1whia_ b.39.1.1 (A:) Ribosomal protein L14 {Bacillus stearothermophilus [TaxId: 1422]} Length = 122

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 71.7 bits (176), Expect = 5e-17
 Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 23/114 (20%)

Query: 35  IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHI--GTIGDKVLVAI-----KGEKK 87
           I+  +RL+V DN   G       +   VI +   +      IGD V+  +      G  K
Sbjct: 2   IQQESRLKVADNS--G------AREVLVIKVLGGSGRRYANIGDVVVATVKDATPGGVVK 53

Query: 88  KGIIVGV--------KKHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLR 133
           KG +V           +       + D N  V+I D  +P GTRI  P+   LR
Sbjct: 54  KGQVVKAVVVRTKRGVRRPDGSYIRFDENACVIIRDDKSPRGTRIFGPVARELR 107

>d2j01o1 b.39.1.1 (O:1-122) Ribosomal protein L14 {Thermus thermophilus [TaxId: 274]} Length = 122

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Thermus thermophilus [TaxId: 274]

 Score = 68.6 bits (168), Expect = 8e-16
 Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 23/114 (20%)

Query: 35  IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIY--NQTHIGTIGDKVLVAI---------- 82
           I+  T L V DN           +    I +   +     T+GD ++ ++          
Sbjct: 2   IQPQTYLEVADNTG--------ARKIMCIRVLKGSNAKYATVGDVIVASVKEAIPRGAVK 53

Query: 83  KGEKKKGIIVGVKKHQKPH---IPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLR 133
           +G+  K ++V  KK  K       + D N  V+I++   P GTR+  P+   LR
Sbjct: 54  EGDVVKAVVVRTKKEIKRPDGSAIRFDDNAAVIINNQLEPRGTRVFGPVARELR 107

>d1vqok1 b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 132

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 63.6 bits (155), Expect = 6e-14
 Identities = 20/115 (17%), Positives = 47/115 (40%), Gaps = 24/115 (20%)

Query: 35  IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIY------NQTHIGTIGDKVLVAIK----- 83
           ++  + +   DN           +  +VI+++      N+     +GDK+ V++      
Sbjct: 12  LEKGSLITCADNTG--------ARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTPE 63

Query: 84  --GEKKKGIIVGVKKHQKPH---IPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLR 133
              +  + ++V  +K  +       K + N  V++D++  P GT +  PI   + 
Sbjct: 64  MRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREVA 118

>d2gyci1 b.39.1.1 (I:2-122) Ribosomal protein L14 {Escherichia coli [TaxId: 562]} Length = 121

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Escherichia coli [TaxId: 562]

 Score = 54.0 bits (130), Expect = 2e-10
 Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 24/115 (20%)

Query: 35  IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHI--GTIGDKVLVAI---------- 82
           I+  T L V DN   G       +    I +   +H     +GD + + I          
Sbjct: 1   IQEQTMLNVADNS--G------ARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVK 52

Query: 83  KGEKKKGIIVGVKKHQKPH---IPKTDTNNVVLIDDSG-TPLGTRIHVPIPSMLR 133
           KG+  K ++V  KK  +     + + D N  VL++++   P+GTRI  P+   LR
Sbjct: 53  KGDVLKAVVVRTKKGVRRPDGSVIRFDGNACVLLNNNSEQPIGTRIFGPVTRELR 107

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	205
d1whia_	122	Ribosomal protein L14 {Bacillus stearothermophilus	100.0
d2j01o1	122	Ribosomal protein L14 {Thermus thermophilus [TaxId	100.0
d1vqok1	132	Ribosomal protein L14 {Archaeon Haloarcula marismo	100.0
d2gyci1	121	Ribosomal protein L14 {Escherichia coli [TaxId: 56	100.0

>d1whia_ b.39.1.1 (A:) Ribosomal protein L14 {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=2.6e-43  Score=277.86  Aligned_cols=107  Identities=29%  Similarity=0.453  Sum_probs=101.3

Q ss_pred             cccccCeEEEEeCChhcccccccCCCcEEEEEcc--CCcccccCCEEEEEEc----------CeeeeEEEEeEEec---c
Q psy4063          34 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN--QTHIGTIGDKVLVAIK----------GEKKKGIIVGVKKH---Q   98 (205)
Q Consensus        34 MIqk~T~L~VaDNSGagk~~~~~~K~v~CI~V~~--k~r~A~IGD~IvVSVK----------GeV~kAVIVRtKk~---~   98 (205)
                      |||.+|+|+|+|||||        |.++||+|++  ++++|.+||+|+|+||          |++++|||||||++   .
T Consensus         1 MIq~~t~l~v~DNSGa--------k~v~cI~v~~~~~~~~a~vGD~I~vsVk~~~~~~~vkkg~v~~AvIVrtkk~~~R~   72 (122)
T d1whia_           1 MIQQESRLKVADNSGA--------REVLVIKVLGGSGRRYANIGDVVVATVKDATPGGVVKKGQVVKAVVVRTKRGVRRP   72 (122)
T ss_dssp             CBCTTCEEEECBSSSE--------EEEEEEEECSSTTCCCBCTTCEEEEEEEEECTTSSSCTTCEEEEEEEECSSCEECT
T ss_pred             CCccCcEEEEeeCCCC--------CEEEEEEEECCCCccccccCCEEEEEEeecccCCeeEcccceeeEEEEEeeeeecc
Confidence            9999999999999998        7789999997  5678999999999997          79999999999998   5


Q ss_pred             CCCeeeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchhhhhhhHHHH
Q psy4063          99 KPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTNTLNSINNIS  158 (205)
Q Consensus        99 dG~~ikFddNavVLLn~kg~PlGTRI~GPVp~ELR~k~~~~~~~~~~~~~KIlSlA~~ii  158 (205)
                      ||++++|||||+||+|++++|+||||+||||+|||++          +|+||+|||+.|+
T Consensus        73 dG~~i~F~~Na~VLl~~~~~P~GTrI~Gpv~~elr~~----------~~~Ki~sLA~~vi  122 (122)
T d1whia_          73 DGSYIRFDENACVIIRDDKSPRGTRIFGPVARELRDK----------DFMKIISLAPEVI  122 (122)
T ss_dssp             TSCEECCSSCEEEEECTTSCBSSSCBCSCBCTHHHHT----------TCHHHHHHCSCBC
T ss_pred             CCceEEeCCCEEEEECCCCCEeeeeEeccchHHHhhc----------CCchhhcccchhC
Confidence            8999999999999999999999999999999999999          9999999998753

>d2j01o1 b.39.1.1 (O:1-122) Ribosomal protein L14 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=5.3e-43  Score=275.90  Aligned_cols=107  Identities=25%  Similarity=0.402  Sum_probs=101.5

Q ss_pred             cccccCeEEEEeCChhcccccccCCCcEEEEEcc--CCcccccCCEEEEEEc----------CeeeeEEEEeEEec---c
Q psy4063          34 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN--QTHIGTIGDKVLVAIK----------GEKKKGIIVGVKKH---Q   98 (205)
Q Consensus        34 MIqk~T~L~VaDNSGagk~~~~~~K~v~CI~V~~--k~r~A~IGD~IvVSVK----------GeV~kAVIVRtKk~---~   98 (205)
                      |||++|+|+|+|||||        |.++||++|+  ++++|.+||+|+||||          |++++|||||||++   .
T Consensus         1 MIq~~t~l~v~DNSGa--------k~v~cI~v~~~~~~~~a~vGD~I~vsVkk~~~~~~vkkg~v~~AvIVrtkk~~~r~   72 (122)
T d2j01o1           1 MIQPQTYLEVADNTGA--------RKIMCIRVLKGSNAKYATVGDVIVASVKEAIPRGAVKEGDVVKAVVVRTKKEIKRP   72 (122)
T ss_dssp             CCCTTCEEEECSSSSC--------CEEEEEEECSSTTCCCCCTTCEEEEEEEECCTTCSSCSSCEEEEEEEECSSCEECT
T ss_pred             CCccCcEEEEeeCCCC--------cEEEEEEEeCCCCCcccccCcEEEEEEeecccCCccccCcCcceeEEeeecceEcC
Confidence            9999999999999998        7889999997  5678999999999997          78999999999998   5


Q ss_pred             CCCeeeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchhhhhhhHHHH
Q psy4063          99 KPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTNTLNSINNIS  158 (205)
Q Consensus        99 dG~~ikFddNavVLLn~kg~PlGTRI~GPVp~ELR~k~~~~~~~~~~~~~KIlSlA~~ii  158 (205)
                      ||++++|||||+||+|++++|+||||+||||+|||++          +|+||+|||+.|+
T Consensus        73 dG~~i~F~~Na~VLl~~~~~p~GTrI~Gpv~~elr~~----------~~~Ki~slA~~vi  122 (122)
T d2j01o1          73 DGSAIRFDDNAAVIINNQLEPRGTRVFGPVARELREK----------GFMKIVSLAPEVL  122 (122)
T ss_dssp             TSCEEECSSCEEEEECTTSCCSSSCCCSCCCTHHHHH----------CCHHHHHHCSCCC
T ss_pred             CCCEEEcCCCEEEEECCCCCEeeeEEeccchHHHhhc----------CCchhhccccccC
Confidence            8999999999999999999999999999999999999          9999999998753

>d1vqok1 b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=2e-41  Score=270.52  Aligned_cols=111  Identities=18%  Similarity=0.302  Sum_probs=101.5

Q ss_pred             ccccccccccCeEEEEeCChhcccccccCCCcEEEEEcc----CC--cccccCCEEEEEEc-------CeeeeEEEEeEE
Q psy4063          29 TPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN----QT--HIGTIGDKVLVAIK-------GEKKKGIIVGVK   95 (205)
Q Consensus        29 ~~~~~MIqk~T~L~VaDNSGagk~~~~~~K~v~CI~V~~----k~--r~A~IGD~IvVSVK-------GeV~kAVIVRtK   95 (205)
                      ....+|||.+|.|+|+|||||        |.++||+|++    ++  .+|++||+|+|+||       |++++|||||||
T Consensus         6 ~~~~~~Iq~~s~L~v~DNSGa--------k~v~cI~V~~~~~~k~r~~~a~vGD~IvvsVk~~~~~~k~~v~~AvIVrtk   77 (132)
T d1vqok1           6 ADVTQGLEKGSLITCADNTGA--------RELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTPEMRRQVLEAVVVRQR   77 (132)
T ss_dssp             SEECCCEETTCEEEECBSSSE--------EEEEEEEETTCCCCTTCCCEECTTCEEEEEEEEECTTTTTCEEEEEEEECS
T ss_pred             ccccccccccCEEEEeeCCCC--------ceEEEEEEeccccccccccccccceEEEEEEeecCCCcccceEEEEEEEec
Confidence            346899999999999999998        7789999996    12  25999999999996       899999999999


Q ss_pred             ec---cCCCeeeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchhhhhhhHHHH
Q psy4063          96 KH---QKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTNTLNSINNIS  158 (205)
Q Consensus        96 k~---~dG~~ikFddNavVLLn~kg~PlGTRI~GPVp~ELR~k~~~~~~~~~~~~~KIlSlA~~ii  158 (205)
                      ++   .||++++|||||+||+|++++|+||||+||||+|||++           |+||+|||+.||
T Consensus        78 k~~~R~dG~~i~FddNa~VLi~~~~~p~GTRI~GpV~~Elr~k-----------~~Ki~sLA~~iv  132 (132)
T d1vqok1          78 KPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREVAQR-----------FGSVASAATMIV  132 (132)
T ss_dssp             SCEECTTSCEEEESSCEEEEECTTSCBSSSCBCSCBCHHHHHH-----------SHHHHTTCSCBC
T ss_pred             CcEECCCCCEEEcCCCEEEEECCCCCEeeeEEeccHhHHHHhh-----------hhHHHhcccccC
Confidence            97   59999999999999999999999999999999999987           999999998753

>d2gyci1 b.39.1.1 (I:2-122) Ribosomal protein L14 {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.7e-41  Score=265.93  Aligned_cols=105  Identities=27%  Similarity=0.451  Sum_probs=98.3

Q ss_pred             ccccCeEEEEeCChhcccccccCCCcEEEEEcc--CCcccccCCEEEEEEc----------CeeeeEEEEeEEec---cC
Q psy4063          35 IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN--QTHIGTIGDKVLVAIK----------GEKKKGIIVGVKKH---QK   99 (205)
Q Consensus        35 Iqk~T~L~VaDNSGagk~~~~~~K~v~CI~V~~--k~r~A~IGD~IvVSVK----------GeV~kAVIVRtKk~---~d   99 (205)
                      ||.+|+|+|+|||||        |.++||++|+  ++++|++||+|+||||          |++++|||||||++   .|
T Consensus         1 IQ~~S~l~v~DNSGa--------k~v~cI~vl~~~~~~~a~vGD~I~vsVk~~~~~~~vkkg~v~~AvIVrtkk~~~R~d   72 (121)
T d2gyci1           1 IQEQTMLNVADNSGA--------RRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKAVVVRTKKGVRRPD   72 (121)
T ss_dssp             CCTTCEEEECSCSSB--------CEEEEEEETTCCSSSCCCTTCEEEECCCSBCSSSSCCTTCCEEEEEEECSSCEECTT
T ss_pred             CCcCCeEEEeeCCCc--------cEEEEEEEeCCCCCccCccCcEEEEEEEEccCCCccccccEEEEEEEEEeeeEeccC
Confidence            799999999999998        7889999997  5678999999999997          79999999999998   58


Q ss_pred             CCeeeeCCceEEEECCCC-CccceEEecchhHHHHhhhhhhcccCCCCchhhhhhhHHH
Q psy4063         100 PHIPKTDTNNVVLIDDSG-TPLGTRIHVPIPSMLRTILKEKTLSKGADYTNTLNSINNI  157 (205)
Q Consensus       100 G~~ikFddNavVLLn~kg-~PlGTRI~GPVp~ELR~k~~~~~~~~~~~~~KIlSlA~~i  157 (205)
                      |++++|||||+||||+++ +|+||||+||||+|||++          +|+||+|||++|
T Consensus        73 G~~i~F~~Na~VLi~~~~~~p~GTrI~Gpv~~elr~~----------~~~Ki~slA~~v  121 (121)
T d2gyci1          73 GSVIRFDGNACVLLNNNSEQPIGTRIFGPVTRELRSE----------KFMKIISLAPEV  121 (121)
T ss_dssp             SCEECCSSCEEEEECSSSSCBSSSCCCSCBCSTTSSS----------SCSHHHHTCSCB
T ss_pred             CeEEEeCCCEEEEEcCCCCCcccCeEEccchHHHhHc----------CCchhhcccccC
Confidence            999999999999999998 699999999999999988          899999999753