Psyllid ID: psy4232

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130
Protein Sequence
MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQKKGQEEEATRKRTRRTHKFQRAIVGASINDILAKRNVKPEIRKAQREQAIKAAKEQKRAQKEAKKPPPPTK
Secondary Structure (PSIPRED)
ccEEEEEccccccccccccEEEEEcccEEEEEcHHHHHHHHcccccccccHHHHHHHHHcccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEccccccccccEEEEEccHHHEHEccHHHHHHHHHcccccHcHHHHHHHHHccccccEccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mklglcaysgykiypghgktlvkvdgksftfinskcessfkmrrnprkvTWTVLYRRKQKKGQEEEATRKRTRRTHKFQRAIVGASINDIlakrnvkpEIRKAQREQAIKAAKEQKRAQkeakkpppptk
Flexible Loop (DISEMBL)
mklglcaysgykiypghgktLVKVDGKSFTFInskcessfkmrrnprkvtwtvlyrrkqkkgqeeeatrkrtrrthkfqraivgasindilakrnvkpEIRKAQREQAIKAAKEqkraqkeakkpppptk
Low Complexity Region (SEG)
MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQKKGQeeeatrkrtrrtHKFQRAIVGASINDILAKRNVKPEIrkaqreqaikaakeqkraqkeakkppppTK
Disordered region (IsUnstruct)
**LGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYR**********************QRAIVGASINDILA**************************************
Disordered Region (DISOPRED)
MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQ******************FQRAIVGASINDIL***************************************
Disordered Region (DISEMBL)
MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYR******************THKFQRAIVGASINDILAKRNVKPEI******************************
Disordered Region (DISPRO)
*KLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQKKGQEEEATRKRTRRTHKFQRAIVGASINDILAKRNVKPEIRKAQREQAIKAAKEQKRAQ*E*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQKKGQEEEATRKRTRRTHKFQRAIVGASINDILAKRNVKPEIxxxxxxxxxxxxxxxxxxxxxxKKPPPPTK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	130	2.2.26 [Sep-21-2011]
Q962T5	155	60S ribosomal protein L24	N/A	N/A	0.884	0.741	0.834	1e-53
Q6F444	155	60S ribosomal protein L24	N/A	N/A	0.884	0.741	0.826	2e-52
Q9VJY6	155	60S ribosomal protein L24	yes	N/A	0.884	0.741	0.791	3e-51
Q9DFQ7	157	60S ribosomal protein L24	N/A	N/A	0.961	0.796	0.672	4e-46
Q8ISQ3	154	60S ribosomal protein L24	N/A	N/A	0.823	0.694	0.700	5e-42
Q8JGR4	157	60S ribosomal protein L24	yes	N/A	0.846	0.700	0.690	7e-42
Q90YU3	157	60S ribosomal protein L24	N/A	N/A	0.823	0.681	0.691	6e-41
P83732	157	60S ribosomal protein L24	yes	N/A	0.846	0.700	0.681	7e-41
Q8BP67	157	60S ribosomal protein L24	yes	N/A	0.846	0.700	0.681	7e-41
P61122	157	60S ribosomal protein L24	N/A	N/A	0.846	0.700	0.681	7e-41

>sp|Q962T5|RL24_SPOFR 60S ribosomal protein L24 OS=Spodoptera frugiperda GN=RpL24 PE=2 SV=1

 Score =  207 bits (528), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 96/115 (83%), Positives = 110/115 (95%)

Query: 1   MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQK 60
           MK+GLCAYSGYKIYPGHGKT+VKVDGK+FTF+NSKCE++  MRRNPRKVTWTVLYRRK K
Sbjct: 1   MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFK 60

Query: 61  KGQEEEATRKRTRRTHKFQRAIVGASINDILAKRNVKPEIRKAQREQAIKAAKEQ 115
           KGQEEE T+KRTRRT K+QRAIVGAS++DI+AKRN+KPE+RKAQR+QAIKAAKEQ
Sbjct: 61  KGQEEEQTKKRTRRTQKYQRAIVGASLSDIMAKRNMKPEVRKAQRDQAIKAAKEQ 115

Spodoptera frugiperda (taxid: 7108)

>sp|Q6F444|RL24_PLUXY 60S ribosomal protein L24 OS=Plutella xylostella GN=RpL24 PE=2 SV=1

 Score =  204 bits (518), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 95/115 (82%), Positives = 108/115 (93%)

Query: 1   MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQK 60
           MK+GLCAYSGYKIYPGHGKT+VKVDGK+FTF+NSKCE++  MRRNPRKVTWTVLYRRK K
Sbjct: 1   MKIGLCAYSGYKIYPGHGKTMVKVDGKNFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFK 60

Query: 61  KGQEEEATRKRTRRTHKFQRAIVGASINDILAKRNVKPEIRKAQREQAIKAAKEQ 115
           KGQEEE  +KRTRRT K+QRAIVGAS++DI+AKRN+KPE+RKAQREQAIK AKEQ
Sbjct: 61  KGQEEEQAKKRTRRTQKYQRAIVGASLSDIMAKRNMKPEVRKAQREQAIKQAKEQ 115

Plutella xylostella (taxid: 51655)

>sp|Q9VJY6|RL24_DROME 60S ribosomal protein L24 OS=Drosophila melanogaster GN=RpL24 PE=1 SV=1

 Score =  199 bits (507), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 91/115 (79%), Positives = 107/115 (93%)

Query: 1   MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQK 60
           MK+GLCA+SGYKIYPGHGKT+VK+DGKSFTF++ KCE S+ M+RNPRKVTWTVLYRRK +
Sbjct: 1   MKIGLCAFSGYKIYPGHGKTMVKIDGKSFTFLDKKCERSYLMKRNPRKVTWTVLYRRKHR 60

Query: 61  KGQEEEATRKRTRRTHKFQRAIVGASINDILAKRNVKPEIRKAQREQAIKAAKEQ 115
           KG EEEA++KRTRRT KFQRAIVGAS+ +ILAKRN+KPE+RKAQR+QAIK AKEQ
Sbjct: 61  KGIEEEASKKRTRRTQKFQRAIVGASLAEILAKRNMKPEVRKAQRDQAIKVAKEQ 115

Drosophila melanogaster (taxid: 7227)

>sp|Q9DFQ7|RL24_GILMI 60S ribosomal protein L24 OS=Gillichthys mirabilis GN=rpl24 PE=2 SV=2

 Score =  182 bits (463), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 84/125 (67%), Positives = 105/125 (84%)

Query: 1   MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQK 60
           MK+ LC++SGYKIYPGHG+   ++DGK F F+N+KCES+F  +RNPR++ WTVLYRRK K
Sbjct: 1   MKVELCSFSGYKIYPGHGRRYARIDGKVFQFLNAKCESAFLAKRNPRQINWTVLYRRKHK 60

Query: 61  KGQEEEATRKRTRRTHKFQRAIVGASINDILAKRNVKPEIRKAQREQAIKAAKEQKRAQK 120
           KGQ EE T+KRTRR  KFQRAI GAS+ +I+AKRN KPE+RKAQREQAI+AAKE K+A++
Sbjct: 61  KGQSEEVTKKRTRRAVKFQRAITGASLAEIMAKRNQKPEVRKAQREQAIRAAKESKKAKQ 120

Query: 121 EAKKP 125
             KKP
Sbjct: 121 ATKKP 125

Gillichthys mirabilis (taxid: 8222)

>sp|Q8ISQ3|RL24_BRABE 60S ribosomal protein L24 OS=Branchiostoma belcheri GN=RPL24 PE=2 SV=1

 Score =  169 bits (428), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 75/107 (70%), Positives = 92/107 (85%)

Query: 1   MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQK 60
           MK+ LC YSGYKIYPGHGK   + DG+ +TF+N+KCE+SF M+RNPR++TWTVLYRRK K
Sbjct: 1   MKIELCLYSGYKIYPGHGKRYARTDGRVYTFLNAKCEASFLMKRNPREITWTVLYRRKHK 60

Query: 61  KGQEEEATRKRTRRTHKFQRAIVGASINDILAKRNVKPEIRKAQREQ 107
           KGQ+EE  +KR+RRT KFQRAI GAS+ +I+AKRN KPE+RKAQREQ
Sbjct: 61  KGQQEEIQKKRSRRTAKFQRAITGASLTEIMAKRNQKPEVRKAQREQ 107

Branchiostoma belcheri (taxid: 7741)

>sp|Q8JGR4|RL24_DANRE 60S ribosomal protein L24 OS=Danio rerio GN=rpl24 PE=2 SV=1

 Score =  169 bits (427), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 76/110 (69%), Positives = 93/110 (84%)

Query: 1   MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQK 60
           MK+ LC++SGYKIYPGHG+   +VDGK F F+N+KCES+F  +RNPR++ WTVLYRRK K
Sbjct: 1   MKVELCSFSGYKIYPGHGRRYARVDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHK 60

Query: 61  KGQEEEATRKRTRRTHKFQRAIVGASINDILAKRNVKPEIRKAQREQAIK 110
           KGQ EE ++KRTRR  KFQRAI GAS+ +ILAKRN KPE+RKAQREQAI+
Sbjct: 61  KGQSEEVSKKRTRRAVKFQRAITGASLAEILAKRNQKPEVRKAQREQAIR 110

Plays an essential role in early embryonic development.

Danio rerio (taxid: 7955)

>sp|Q90YU3|RL24_ICTPU 60S ribosomal protein L24 OS=Ictalurus punctatus GN=rpl24 PE=2 SV=1

 Score =  165 bits (418), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 74/107 (69%), Positives = 89/107 (83%)

Query: 1   MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQK 60
           MK+ LC++SGYKIYPGHG    ++DGK F F+N+KCES+F  +RNPR++ WTVLYRRK K
Sbjct: 1   MKVELCSFSGYKIYPGHGPVYARIDGKVFQFLNAKCESAFLTKRNPRQINWTVLYRRKHK 60

Query: 61  KGQEEEATRKRTRRTHKFQRAIVGASINDILAKRNVKPEIRKAQREQ 107
           KGQ EE T+KRTRR  KFQRAI GAS+ +ILAKRN KPE+RKAQREQ
Sbjct: 61  KGQSEEVTKKRTRRAVKFQRAITGASLAEILAKRNQKPEVRKAQREQ 107

Ictalurus punctatus (taxid: 7998)

>sp|P83732|RL24_RAT 60S ribosomal protein L24 OS=Rattus norvegicus GN=Rpl24 PE=1 SV=1

 Score =  165 bits (418), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 75/110 (68%), Positives = 91/110 (82%)

Query: 1   MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQK 60
           MK+ LC++SGYKIYPGHG+   + DGK F F+N+KCES+F  +RNPR++ WTVLYRRK K
Sbjct: 1   MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHK 60

Query: 61  KGQEEEATRKRTRRTHKFQRAIVGASINDILAKRNVKPEIRKAQREQAIK 110
           KGQ EE  +KRTRR  KFQRAI GAS+ DI+AKRN KPE+RKAQREQAI+
Sbjct: 61  KGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIR 110

Rattus norvegicus (taxid: 10116)

>sp|Q8BP67|RL24_MOUSE 60S ribosomal protein L24 OS=Mus musculus GN=Rpl24 PE=2 SV=2

 Score =  165 bits (418), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 75/110 (68%), Positives = 91/110 (82%)

Query: 1   MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQK 60
           MK+ LC++SGYKIYPGHG+   + DGK F F+N+KCES+F  +RNPR++ WTVLYRRK K
Sbjct: 1   MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHK 60

Query: 61  KGQEEEATRKRTRRTHKFQRAIVGASINDILAKRNVKPEIRKAQREQAIK 110
           KGQ EE  +KRTRR  KFQRAI GAS+ DI+AKRN KPE+RKAQREQAI+
Sbjct: 61  KGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIR 110

Mus musculus (taxid: 10090)

>sp|P61122|RL24_MACFA 60S ribosomal protein L24 OS=Macaca fascicularis GN=RPL24 PE=2 SV=1

 Score =  165 bits (418), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 75/110 (68%), Positives = 91/110 (82%)

Query: 1   MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQK 60
           MK+ LC++SGYKIYPGHG+   + DGK F F+N+KCES+F  +RNPR++ WTVLYRRK K
Sbjct: 1   MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHK 60

Query: 61  KGQEEEATRKRTRRTHKFQRAIVGASINDILAKRNVKPEIRKAQREQAIK 110
           KGQ EE  +KRTRR  KFQRAI GAS+ DI+AKRN KPE+RKAQREQAI+
Sbjct: 61  KGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIR 110

Macaca fascicularis (taxid: 9541)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
70909781	154	ribosomal protein L24e [Hister sp. APV-2	1.0	0.844	0.776	9e-54
332376465	158	unknown [Dendroctonus ponderosae]	1.0	0.822	0.776	1e-53
242010172	153	60S ribosomal protein L24, putative [Ped	0.976	0.830	0.787	2e-53
307168156	154	60S ribosomal protein L24 [Camponotus fl	0.884	0.746	0.869	3e-53
70909779	154	ribosomal protein L24e [Biphyllus lunatu	0.884	0.746	0.843	2e-52
156547333	154	PREDICTED: 60S ribosomal protein L24-lik	0.876	0.740	0.859	2e-52
264667329	154	ribosomal protein L24 [Chrysomela tremul	0.884	0.746	0.843	2e-52
91078162	155	PREDICTED: similar to ribosomal protein	0.876	0.735	0.850	3e-52
70909777	154	ribosomal protein L24e [Agriotes lineatu	0.884	0.746	0.834	3e-52
70909787	154	ribosomal protein L24e [Timarcha baleari	0.907	0.766	0.822	3e-52

>gi|70909781|emb|CAJ17316.1| ribosomal protein L24e [Hister sp. APV-2005]

 Score =  214 bits (545), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 101/130 (77%), Positives = 115/130 (88%)

Query: 1   MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQK 60
           MK+GLCAYSGYKIYPGHGKT+VKVDGK FTF+NSKCE +  M+RNPRKVTWTVLYRRK K
Sbjct: 1   MKIGLCAYSGYKIYPGHGKTMVKVDGKQFTFLNSKCEHAHLMKRNPRKVTWTVLYRRKHK 60

Query: 61  KGQEEEATRKRTRRTHKFQRAIVGASINDILAKRNVKPEIRKAQREQAIKAAKEQKRAQK 120
           KGQ EEA+++RTRRT KFQRAIVGAS+NDILAKRN +PE+RKAQREQAI+AAKEQK++ K
Sbjct: 61  KGQGEEASKRRTRRTQKFQRAIVGASLNDILAKRNQRPEVRKAQREQAIRAAKEQKKSTK 120

Query: 121 EAKKPPPPTK 130
             KK   P K
Sbjct: 121 TVKKAAQPAK 130

Source: Hister sp. APV-2005

Species: Hister sp. APV-2005

Genus: Hister

Family: Histeridae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332376465|gb|AEE63372.1| unknown [Dendroctonus ponderosae]

 Score =  214 bits (544), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 101/130 (77%), Positives = 115/130 (88%)

Query: 1   MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQK 60
           MK+GLCAYSGYK YPGHGKTLVKVDGK+FTF+NSKCE +  MRRNPRKVTWTVLYRRK K
Sbjct: 1   MKIGLCAYSGYKTYPGHGKTLVKVDGKNFTFLNSKCERAHLMRRNPRKVTWTVLYRRKHK 60

Query: 61  KGQEEEATRKRTRRTHKFQRAIVGASINDILAKRNVKPEIRKAQREQAIKAAKEQKRAQK 120
           KGQEEE  +KRTR+T KFQRAIVGAS+NDI+AKRN +PEIR+AQREQAI+AAKE K++ +
Sbjct: 61  KGQEEETAKKRTRKTQKFQRAIVGASLNDIIAKRNQRPEIREAQREQAIRAAKEAKKSTR 120

Query: 121 EAKKPPPPTK 130
            AKK   PTK
Sbjct: 121 TAKKAAQPTK 130

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242010172|ref|XP_002425850.1| 60S ribosomal protein L24, putative [Pediculus humanus corporis] gi|212509783|gb|EEB13112.1| 60S ribosomal protein L24, putative [Pediculus humanus corporis]

 Score =  213 bits (542), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 100/127 (78%), Positives = 114/127 (89%)

Query: 1   MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQK 60
           MK+GLC+YSGYKIYPGHGKT+VK DGK FTF+N KCES+  +RRNPRKVTWTVLYRRK K
Sbjct: 1   MKIGLCSYSGYKIYPGHGKTMVKADGKVFTFLNKKCESAHLLRRNPRKVTWTVLYRRKHK 60

Query: 61  KGQEEEATRKRTRRTHKFQRAIVGASINDILAKRNVKPEIRKAQREQAIKAAKEQKRAQK 120
           KGQEEE T++RTRRT KFQRAIVGAS+ +ILAKRN+KPE+RKAQREQAI+AAKEQK+A K
Sbjct: 61  KGQEEEQTKRRTRRTQKFQRAIVGASLTEILAKRNMKPEVRKAQREQAIRAAKEQKKAIK 120

Query: 121 EAKKPPP 127
             KKP P
Sbjct: 121 ATKKPAP 127

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307168156|gb|EFN61435.1| 60S ribosomal protein L24 [Camponotus floridanus]

 Score =  213 bits (541), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 100/115 (86%), Positives = 108/115 (93%)

Query: 1   MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQK 60
           MK+GLCAYSGYKIYPGHGKT+VKVDGK+FTF+NSKCES+  MRRNPRKVTWTVLYRRK K
Sbjct: 1   MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCESAHLMRRNPRKVTWTVLYRRKHK 60

Query: 61  KGQEEEATRKRTRRTHKFQRAIVGASINDILAKRNVKPEIRKAQREQAIKAAKEQ 115
           KGQEEE T+KRTRR  KFQRAIVGAS+ DILAKRN+KPEIRKAQREQAIKAAKEQ
Sbjct: 61  KGQEEEQTKKRTRRAQKFQRAIVGASLTDILAKRNMKPEIRKAQREQAIKAAKEQ 115

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|70909779|emb|CAJ17315.1| ribosomal protein L24e [Biphyllus lunatus]

 Score =  210 bits (534), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 97/115 (84%), Positives = 109/115 (94%)

Query: 1   MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQK 60
           MK+GLCAYSGYKIYPGHGKT+VKVDGK+FTF+NSKCE +  M+RNPRKVTWTVLYRRK K
Sbjct: 1   MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCERAHLMKRNPRKVTWTVLYRRKHK 60

Query: 61  KGQEEEATRKRTRRTHKFQRAIVGASINDILAKRNVKPEIRKAQREQAIKAAKEQ 115
           KGQEEEAT+KRTRRT KFQR+IVGAS+NDILAKRN +PE+RKAQREQAI+AAKEQ
Sbjct: 61  KGQEEEATKKRTRRTQKFQRSIVGASLNDILAKRNQRPEVRKAQREQAIRAAKEQ 115

Source: Biphyllus lunatus

Species: Biphyllus lunatus

Genus: Biphyllus

Family: Biphyllidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156547333|ref|XP_001601399.1| PREDICTED: 60S ribosomal protein L24-like [Nasonia vitripennis]

 Score =  210 bits (534), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 98/114 (85%), Positives = 108/114 (94%)

Query: 1   MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQK 60
           MK+GLCAYSGYKIYPGHGKT+VKVDGK+FTF+NSKCES+  M+RNPRKVTWTVLYRRK K
Sbjct: 1   MKIGLCAYSGYKIYPGHGKTMVKVDGKNFTFLNSKCESAHLMKRNPRKVTWTVLYRRKHK 60

Query: 61  KGQEEEATRKRTRRTHKFQRAIVGASINDILAKRNVKPEIRKAQREQAIKAAKE 114
           KGQEEE T+KRTRRT KFQRAIVGAS+ DILAKRN+KPEIRKAQR+QAIKAAKE
Sbjct: 61  KGQEEEQTKKRTRRTQKFQRAIVGASLTDILAKRNMKPEIRKAQRDQAIKAAKE 114

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|264667329|gb|ACY71250.1| ribosomal protein L24 [Chrysomela tremula]

 Score =  209 bits (533), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 97/115 (84%), Positives = 108/115 (93%)

Query: 1   MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQK 60
           MK+GLCAYSGYKIYPGHGKTLVK+DGKSFTF+NSKCE +  M+RNPRKVTWTVLYRRK K
Sbjct: 1   MKIGLCAYSGYKIYPGHGKTLVKIDGKSFTFLNSKCERAHLMKRNPRKVTWTVLYRRKHK 60

Query: 61  KGQEEEATRKRTRRTHKFQRAIVGASINDILAKRNVKPEIRKAQREQAIKAAKEQ 115
           KGQEEE T+KRTRRT KFQRAIVGAS+NDI+AKRN +PE+RKAQREQAI+AAKEQ
Sbjct: 61  KGQEEETTKKRTRRTQKFQRAIVGASLNDIMAKRNQRPEVRKAQREQAIRAAKEQ 115

Source: Chrysomela tremula

Species: Chrysomela tremula

Genus: Chrysomela

Family: Chrysomelidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91078162|ref|XP_966448.1| PREDICTED: similar to ribosomal protein L24e [Tribolium castaneum] gi|270001366|gb|EEZ97813.1| hypothetical protein TcasGA2_TC000180 [Tribolium castaneum]

 Score =  209 bits (532), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 97/114 (85%), Positives = 108/114 (94%)

Query: 1   MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQK 60
           MK+GLCAYSGYKIYPGHGKT+VKVDGK+FTF+NSKCE +  M+RNPRKVTWTVLYRRK K
Sbjct: 1   MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCERAHLMKRNPRKVTWTVLYRRKHK 60

Query: 61  KGQEEEATRKRTRRTHKFQRAIVGASINDILAKRNVKPEIRKAQREQAIKAAKE 114
           KGQEEEAT+KRTRRT KFQRAIVGAS+NDILAKRN +PE+RKAQREQAI+AAKE
Sbjct: 61  KGQEEEATKKRTRRTQKFQRAIVGASLNDILAKRNQRPEVRKAQREQAIRAAKE 114

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|70909777|emb|CAJ17314.1| ribosomal protein L24e [Agriotes lineatus]

 Score =  209 bits (532), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 96/115 (83%), Positives = 108/115 (93%)

Query: 1   MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQK 60
           MK+GLC YSGYKIYPGHGKT+VKVDGK+FTF+NSKCE++  MRRNPRKVTWTVLYRRK K
Sbjct: 1   MKIGLCVYSGYKIYPGHGKTMVKVDGKNFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKHK 60

Query: 61  KGQEEEATRKRTRRTHKFQRAIVGASINDILAKRNVKPEIRKAQREQAIKAAKEQ 115
           KGQEEEA +KRTRRT KFQRAIVGAS+NDI+AKRN +PE+RKAQREQAI+AAKEQ
Sbjct: 61  KGQEEEAAKKRTRRTQKFQRAIVGASLNDIMAKRNQRPEVRKAQREQAIRAAKEQ 115

Source: Agriotes lineatus

Species: Agriotes lineatus

Genus: Agriotes

Family: Elateridae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|70909787|emb|CAJ17319.1| ribosomal protein L24e [Timarcha balearica]

 Score =  209 bits (532), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 97/118 (82%), Positives = 110/118 (93%)

Query: 1   MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQK 60
           MK+GLCAYSGYKIYPGHGKT+VKVDGK FTF+NSKCE +  M+RNPRKVTWTVLYRRK K
Sbjct: 1   MKIGLCAYSGYKIYPGHGKTMVKVDGKCFTFLNSKCEHAHLMKRNPRKVTWTVLYRRKHK 60

Query: 61  KGQEEEATRKRTRRTHKFQRAIVGASINDILAKRNVKPEIRKAQREQAIKAAKEQKRA 118
           KGQEEEAT+KRTRRT KFQRAIVGAS++DI+AKRN +PE+RKAQREQAI+AAKEQK+ 
Sbjct: 61  KGQEEEATKKRTRRTQKFQRAIVGASLSDIMAKRNQRPEVRKAQREQAIRAAKEQKKG 118

Source: Timarcha balearica

Species: Timarcha balearica

Genus: Timarcha

Family: Chrysomelidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
FB|FBgn0032518	155	RpL24 "Ribosomal protein L24"	0.769	0.645	0.68	1.1e-34
ZFIN|ZDB-GENE-020419-25	157	rpl24 "ribosomal protein L24"	0.769	0.636	0.6	7.9e-30
UNIPROTKB|Q862I1	157	RPL24 "60S ribosomal protein L	0.769	0.636	0.59	1.6e-29
UNIPROTKB|C9JNW5	150	RPL24 "60S ribosomal protein L	0.769	0.666	0.59	1.6e-29
UNIPROTKB|P83731	157	RPL24 "60S ribosomal protein L	0.769	0.636	0.59	1.6e-29
RGD|621191	157	Rpl24 "ribosomal protein L24"	0.769	0.636	0.59	1.6e-29
UNIPROTKB|E1C8F7	157	RPL24 "Uncharacterized protein	0.769	0.636	0.58	4.4e-29
UNIPROTKB|F1PGD7	156	RPL24 "Uncharacterized protein	0.761	0.634	0.575	1.2e-28
UNIPROTKB|F2Z5Q2	157	RPL24 "Uncharacterized protein	0.761	0.630	0.575	1.2e-28
POMBASE|SPAC6G9.09c	149	rpl2401 "60S ribosomal protein	0.769	0.671	0.47	4.9e-21

FB|FBgn0032518 RpL24 "Ribosomal protein L24" [Drosophila melanogaster (taxid:7227)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 68/100 (68%), Positives = 81/100 (81%)

Query:     1 MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQK 60
             MK+GLCA+SGYKIYPGHGKT+VK+DGKSFTF++ KCE S+ M+RNPRKVTWTVLYRRK +
Sbjct:     1 MKIGLCAFSGYKIYPGHGKTMVKIDGKSFTFLDKKCERSYLMKRNPRKVTWTVLYRRKHR 60

Query:    61 KGQXXXXXXXXXXXXHKFQRAIVGASINDILAKRNVKPEI 100
             KG              KFQRAIVGAS+ +ILAKRN+KPE+
Sbjct:    61 KGIEEEASKKRTRRTQKFQRAIVGASLAEILAKRNMKPEV 100

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS;IDA

GO:0005840 "ribosome" evidence=IDA

GO:0005811 "lipid particle" evidence=IDA

GO:0000022 "mitotic spindle elongation" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0051298 "centrosome duplication" evidence=IMP

ZFIN|ZDB-GENE-020419-25 rpl24 "ribosomal protein L24" [Danio rerio (taxid:7955)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 60/100 (60%), Positives = 74/100 (74%)

Query:     1 MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQK 60
             MK+ LC++SGYKIYPGHG+   +VDGK F F+N+KCES+F  +RNPR++ WTVLYRRK K
Sbjct:     1 MKVELCSFSGYKIYPGHGRRYARVDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHK 60

Query:    61 KGQXXXXXXXXXXXXHKFQRAIVGASINDILAKRNVKPEI 100
             KGQ             KFQRAI GAS+ +ILAKRN KPE+
Sbjct:    61 KGQSEEVSKKRTRRAVKFQRAITGASLAEILAKRNQKPEV 100

GO:0009790 "embryo development" evidence=IMP

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

UNIPROTKB|Q862I1 RPL24 "60S ribosomal protein L24" [Bos taurus (taxid:9913)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 59/100 (59%), Positives = 73/100 (73%)

Query:     1 MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQK 60
             MK+ LC++SGYKIYPGHG+   + DGK F F+N+KCES+F  +RNPR++ WTVLYRRK K
Sbjct:     1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHK 60

Query:    61 KGQXXXXXXXXXXXXHKFQRAIVGASINDILAKRNVKPEI 100
             KGQ             KFQRAI GAS+ DI+AKRN KPE+
Sbjct:    61 KGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEV 100

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

UNIPROTKB|C9JNW5 RPL24 "60S ribosomal protein L24" [Homo sapiens (taxid:9606)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 59/100 (59%), Positives = 73/100 (73%)

Query:     1 MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQK 60
             MK+ LC++SGYKIYPGHG+   + DGK F F+N+KCES+F  +RNPR++ WTVLYRRK K
Sbjct:     1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHK 60

Query:    61 KGQXXXXXXXXXXXXHKFQRAIVGASINDILAKRNVKPEI 100
             KGQ             KFQRAI GAS+ DI+AKRN KPE+
Sbjct:    61 KGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEV 100

GO:0005840 "ribosome" evidence=IEA

UNIPROTKB|P83731 RPL24 "60S ribosomal protein L24" [Homo sapiens (taxid:9606)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 59/100 (59%), Positives = 73/100 (73%)

Query:     1 MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQK 60
             MK+ LC++SGYKIYPGHG+   + DGK F F+N+KCES+F  +RNPR++ WTVLYRRK K
Sbjct:     1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHK 60

Query:    61 KGQXXXXXXXXXXXXHKFQRAIVGASINDILAKRNVKPEI 100
             KGQ             KFQRAI GAS+ DI+AKRN KPE+
Sbjct:    61 KGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEV 100

GO:0006412 "translation" evidence=NAS;TAS

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0003723 "RNA binding" evidence=TAS

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

RGD|621191 Rpl24 "ribosomal protein L24" [Rattus norvegicus (taxid:10116)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 59/100 (59%), Positives = 73/100 (73%)

Query:     1 MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQK 60
             MK+ LC++SGYKIYPGHG+   + DGK F F+N+KCES+F  +RNPR++ WTVLYRRK K
Sbjct:     1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHK 60

Query:    61 KGQXXXXXXXXXXXXHKFQRAIVGASINDILAKRNVKPEI 100
             KGQ             KFQRAI GAS+ DI+AKRN KPE+
Sbjct:    61 KGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEV 100

GO:0000027 "ribosomal large subunit assembly" evidence=ISO

GO:0003735 "structural constituent of ribosome" evidence=IDA

GO:0006412 "translation" evidence=IC;ISO

GO:0007093 "mitotic cell cycle checkpoint" evidence=ISO

GO:0010458 "exit from mitosis" evidence=ISO

GO:0021554 "optic nerve development" evidence=ISO

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO;IDA

GO:0031290 "retinal ganglion cell axon guidance" evidence=ISO

GO:0060041 "retina development in camera-type eye" evidence=ISO

UNIPROTKB|E1C8F7 RPL24 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 58/100 (58%), Positives = 73/100 (73%)

Query:     1 MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQK 60
             MK+ LC++SGYKIYPGHG+   + DGK F F+N+KCES+F  +RNPR++ WTVLYRRK K
Sbjct:     1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHK 60

Query:    61 KGQXXXXXXXXXXXXHKFQRAIVGASINDILAKRNVKPEI 100
             KGQ             KFQRAI GAS+ +I+AKRN KPE+
Sbjct:    61 KGQSEEIQKKRTRRAVKFQRAITGASLAEIMAKRNQKPEV 100

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

UNIPROTKB|F1PGD7 RPL24 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 57/99 (57%), Positives = 72/99 (72%)

Query:     2 KLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQKK 61
             ++ LC++SGYKIYPGHG+   + DGK F F+N+KCES+F  +RNPR++ WTVLYRRK KK
Sbjct:     1 RVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKK 60

Query:    62 GQXXXXXXXXXXXXHKFQRAIVGASINDILAKRNVKPEI 100
             GQ             KFQRAI GAS+ DI+AKRN KPE+
Sbjct:    61 GQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEV 99

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

UNIPROTKB|F2Z5Q2 RPL24 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 57/99 (57%), Positives = 72/99 (72%)

Query:     2 KLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQKK 61
             ++ LC++SGYKIYPGHG+   + DGK F F+N+KCES+F  +RNPR++ WTVLYRRK KK
Sbjct:     2 RVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKK 61

Query:    62 GQXXXXXXXXXXXXHKFQRAIVGASINDILAKRNVKPEI 100
             GQ             KFQRAI GAS+ DI+AKRN KPE+
Sbjct:    62 GQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEV 100

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

POMBASE|SPAC6G9.09c rpl2401 "60S ribosomal protein L24 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 47/100 (47%), Positives = 64/100 (64%)

Query:     1 MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQK 60
             MK+ +C++SG K+YPG G+  V+ D K F F+N K ES F  R+NPR+++WTVLYRR  K
Sbjct:     1 MKVEVCSFSGSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHK 60

Query:    61 KGQXXXXXXXXXXXXHKFQRAIVGASINDILAKRNVKPEI 100
             KG              K QR IVGA+++ I  KRN +PE+
Sbjct:    61 KGISEEHAKKRTRRTVKHQRGIVGANLDVIKEKRNQRPEV 100

GO:0002181 "cytoplasmic translation" evidence=ISO

GO:0003723 "RNA binding" evidence=ISO

GO:0003735 "structural constituent of ribosome" evidence=ISO

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8ISQ3	RL24_BRABE	No assigned EC number	0.7009	0.8230	0.6948	N/A	N/A
O01868	RL24_CAEEL	No assigned EC number	0.5213	0.8769	0.7169	yes	N/A
Q6FXY9	RL24_CANGA	No assigned EC number	0.5714	0.8076	0.6774	yes	N/A
P04449	RL24A_YEAST	No assigned EC number	0.5238	0.8076	0.6774	yes	N/A
O74884	RL24B_SCHPO	No assigned EC number	0.5327	0.9307	0.8120	yes	N/A
Q8BP67	RL24_MOUSE	No assigned EC number	0.6818	0.8461	0.7006	yes	N/A
Q962T5	RL24_SPOFR	No assigned EC number	0.8347	0.8846	0.7419	N/A	N/A
P24000	RL24B_YEAST	No assigned EC number	0.5225	0.8538	0.7161	yes	N/A
Q9VJY6	RL24_DROME	No assigned EC number	0.7913	0.8846	0.7419	yes	N/A
Q92354	RL24A_SCHPO	No assigned EC number	0.5338	0.9076	0.7919	yes	N/A
P83731	RL24_HUMAN	No assigned EC number	0.6818	0.8461	0.7006	yes	N/A
P83732	RL24_RAT	No assigned EC number	0.6818	0.8461	0.7006	yes	N/A
Q54VN6	RL24_DICDI	No assigned EC number	0.4629	0.8307	0.8503	yes	N/A
Q6F444	RL24_PLUXY	No assigned EC number	0.8260	0.8846	0.7419	N/A	N/A
Q6BNC2	RL24_DEBHA	No assigned EC number	0.5377	0.8153	0.6794	yes	N/A
Q6C4U6	RL24_YARLI	No assigned EC number	0.5428	0.8076	0.6774	yes	N/A
Q8JGR4	RL24_DANRE	No assigned EC number	0.6909	0.8461	0.7006	yes	N/A
Q862I1	RL24_BOVIN	No assigned EC number	0.6818	0.8461	0.7006	yes	N/A
P38665	RL24_KLULA	No assigned EC number	0.5523	0.8076	0.6774	yes	N/A
P38666	RL242_ARATH	No assigned EC number	0.4434	0.8769	0.6993	yes	N/A
Q752U6	RL24_ASHGO	No assigned EC number	0.5428	0.8076	0.6774	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	130
pfam01246	71	pfam01246, Ribosomal_L24e, Ribosomal protein L24e	4e-25
cd00472	54	cd00472, Ribosomal_L24e_L24, Ribosomal protein L24	9e-25
COG2075	66	COG2075, RPL24A, Ribosomal protein L24E [Translati	8e-20
PTZ00033	125	PTZ00033, PTZ00033, 60S ribosomal protein L24; Pro	2e-16
PRK00807	52	PRK00807, PRK00807, 50S ribosomal protein L24e; Va	1e-13
PRK14891	131	PRK14891, PRK14891, 50S ribosomal protein L24e/unk	3e-10
smart00746	39	smart00746, TRASH, metallochaperone-like domain	5e-08

>gnl|CDD|110260 pfam01246, Ribosomal_L24e, Ribosomal protein L24e

 Score = 90.3 bits (224), Expect = 4e-25
 Identities = 43/71 (60%), Positives = 55/71 (77%)

Query: 1  MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQK 60
          MK+ LC++SGYKIYPGHG   V+ D K F F +SKCE +F M+RNPRK+ WT LYR++ K
Sbjct: 1  MKVELCSFSGYKIYPGHGIMFVRKDSKVFRFCSSKCEKNFHMKRNPRKLAWTKLYRKQHK 60

Query: 61 KGQEEEATRKR 71
          KG+ EEA +KR
Sbjct: 61 KGEAEEAAKKR 71

Length = 71

>gnl|CDD|100103 cd00472, Ribosomal_L24e_L24, Ribosomal protein L24e/L24 is a ribosomal protein found in eukaryotes (L24) and in archaea (L24e, distinct from archaeal L24)

 Score = 88.8 bits (221), Expect = 9e-25
 Identities = 32/54 (59%), Positives = 39/54 (72%)

Query: 1  MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVL 54
          MK   C++ GYKIYPGHGK  V+ DGK F F +SKCE +F  +RNPRK+ WTV 
Sbjct: 1  MKTEKCSFCGYKIYPGHGKMYVRNDGKVFRFCSSKCEKNFLRKRNPRKLKWTVA 54

L24e/L24 is located on the surface of the large subunit, adjacent to proteins L14 and L3, and near the translation factor binding site. L24e/L24 appears to play a role in the kinetics of peptide synthesis, and may be involved in interactions between the large and small subunits, either directly or through other factors. In mouse, a deletion mutation in L24 has been identified as the cause for the belly spot and tail (Bst) mutation that results in disrupted pigmentation, somitogenesis and retinal cell fate determination. L24 may be an important protein in eukaryotic reproduction: in shrimp, L24 expression is elevated in the ovary, suggesting a role in oogenesis, and in Arabidopsis, L24 has been proposed to have a specific function in gynoecium development. No protein with sequence or structural homology to L24e/L24 has been identified in bacteria, but a functionally equivalent protein may exist. Bacterial L19 forms an interprotein beta sheet with L14 that is similar to the L24e/L14 interprotein beta sheet observed in the archaeal L24e structures. Some eukaryotic L24 proteins were initially identified as L30, and this alignment model contains several sequences called L30. Length = 54

>gnl|CDD|224986 COG2075, RPL24A, Ribosomal protein L24E [Translation, ribosomal structure and biogenesis]

 Score = 76.6 bits (189), Expect = 8e-20
 Identities = 33/66 (50%), Positives = 43/66 (65%)

Query: 1  MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQK 60
          MK+ +C++ G KI PG G   V+ DGK   F +SKCE  FK+ RNPRK+ WT  YR+  K
Sbjct: 1  MKVRVCSFCGKKIEPGTGIMYVRNDGKVLRFCSSKCEKLFKLGRNPRKLKWTKKYRKMHK 60

Query: 61 KGQEEE 66
          K  +EE
Sbjct: 61 KEIKEE 66

Length = 66

>gnl|CDD|140068 PTZ00033, PTZ00033, 60S ribosomal protein L24; Provisional

 Score = 69.3 bits (169), Expect = 2e-16
 Identities = 44/128 (34%), Positives = 68/128 (53%), Gaps = 7/128 (5%)

Query: 1   MKLGLCAYSGYKIYPGHGKTLVKV----DGKSFTFINSKCESSFKMRRNPRKVTWTVLYR 56
           M+   C +S + ++PGHG+  V           TF+  KC + +  ++NPR + WT  YR
Sbjct: 1   MRTIACEFSHFAVHPGHGRRYVPFAFLSTKPVLTFLRPKCFALYMRKKNPRFLPWTRTYR 60

Query: 57  RKQKKGQEEEATRKRTRRTHKFQRAIVGASINDILAKRNVKPEIRKAQREQAIKAAKEQK 116
           R  +K   +   R+R  RT K QRAIVGA ++ I   + V+  ++K  R    KA + +K
Sbjct: 61  RINRKTTTDRVQRRRAARTVKVQRAIVGADLSYI---QEVRAYVQKVDRSAKAKAVRAEK 117

Query: 117 RAQKEAKK 124
             +K AKK
Sbjct: 118 AERKAAKK 125

Length = 125

>gnl|CDD|179131 PRK00807, PRK00807, 50S ribosomal protein L24e; Validated

 Score = 60.8 bits (148), Expect = 1e-13
 Identities = 23/47 (48%), Positives = 31/47 (65%)

Query: 6  CAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWT 52
          C++ G +I PG GK  VK DG    F +SKCE ++K+ R PRK+ WT
Sbjct: 4  CSFCGKEIEPGTGKMYVKKDGTILYFCSSKCEKNYKLGRVPRKLKWT 50

Length = 52

>gnl|CDD|184885 PRK14891, PRK14891, 50S ribosomal protein L24e/unknown domain fusion protein; Provisional

 Score = 53.8 bits (129), Expect = 3e-10
 Identities = 21/63 (33%), Positives = 32/63 (50%)

Query: 6  CAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQKKGQEE 65
          C Y+G +I PG G   V+ DG    F++SKCE ++ + R  R + WT   R ++      
Sbjct: 7  CDYTGEEIEPGTGTMFVRKDGTVLHFVDSKCEKNYDLGREARDLEWTEAGRAEKGPAAAA 66

Query: 66 EAT 68
           A 
Sbjct: 67 TAA 69

Length = 131

>gnl|CDD|214799 smart00746, TRASH, metallochaperone-like domain

 Score = 45.8 bits (109), Expect = 5e-08
 Identities = 16/39 (41%), Positives = 22/39 (56%)

Query: 6  CAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRR 44
          C++ G  IY      +V  DGK + F +SKC S FK +R
Sbjct: 1  CSFCGKDIYNPGTGIMVVNDGKVYYFCSSKCLSKFKKKR 39

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	130
PTZ00033	125	60S ribosomal protein L24; Provisional	100.0
KOG1722|consensus	155		100.0
PF01246	71	Ribosomal_L24e: Ribosomal protein L24e; InterPro:	100.0
PRK14891	131	50S ribosomal protein L24e/unknown domain fusion p	100.0
COG2075	66	RPL24A Ribosomal protein L24E [Translation, riboso	100.0
cd00472	54	Ribosomal_L24e_L24 Ribosomal protein L24e/L24 is a	100.0
PRK00807	52	50S ribosomal protein L24e; Validated	99.96
KOG1723|consensus	162		99.95
smart00746	39	TRASH metallochaperone-like domain.	98.66
PF04945	47	YHS: YHS domain; InterPro: IPR007029 This short pr	97.27
PF08394	37	Arc_trans_TRASH: Archaeal TRASH domain; InterPro:	97.21
PF06467	43	zf-FCS: MYM-type Zinc finger with FCS sequence mot	96.38
PF05573	149	NosL: NosL; InterPro: IPR008719 NosL is one of the	95.23
PF09889	59	DUF2116: Uncharacterized protein containing a Zn-r	94.92
COG3350	53	Uncharacterized conserved protein [Function unknow	94.52
PF09943	101	DUF2175: Uncharacterized protein conserved in arch	90.84
cd01057	465	AAMH_A Aromatic and Alkene Monooxygenase Hydroxyla	87.17
COG4314	176	NosL Predicted lipoprotein involved in nitrous oxi	86.81
PF04570	58	DUF581: Protein of unknown function (DUF581); Inte	80.34

>PTZ00033 60S ribosomal protein L24; Provisional

Probab=100.00  E-value=5.9e-58  Score=341.90  Aligned_cols=119  Identities=33%  Similarity=0.618  Sum_probs=117.1

Q ss_pred             CceeecccCCCCccCCCcceEEe----ecCceEEEechhHHhhhhcccCCccchhhHHHHHHhcccchHHHHHHhhcccc
Q psy4232           1 MKLGLCAYSGYKIYPGHGKTLVK----VDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQKKGQEEEATRKRTRRTH   76 (130)
Q Consensus         1 mk~~~C~Fsg~~IyPG~G~~~Vr----~Dgkv~~F~ssKc~~~~~~krnPrki~WT~~yRr~~KK~~~~~~~kkr~rr~~   76 (130)
                      |++++|+|||++||||||++||+    +||+||+|||+||+++|++++|||+|.||++||++|+||+++++.++|+++|+
T Consensus         1 Mk~~~C~Fsg~~IyPG~G~~~Vr~~~~~Dgkv~~F~~sKc~~~~~~krnPRkl~WT~~yRr~~kK~~~e~~~kkR~~rtv   80 (125)
T PTZ00033          1 MRTIACEFSHFAVHPGHGRRYVPFAFLSTKPVLTFLRPKCFALYMRKKNPRFLPWTRTYRRINRKTTTDRVQRRRAARTV   80 (125)
T ss_pred             CceeEecCcCCcccCCCCcEeeecccCCCCCEEEEecHHHHHHHHCcCCCccchHHHHHHHHhCCcchhHHHHHHhcCCc
Confidence            89999999999999999999999    99999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhHHHhhHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Q psy4232          77 KFQRAIVGASINDILAKRNVKPEIRKAQREQAIKAAKEQKRAQ  119 (130)
Q Consensus        77 K~~Raivg~sle~I~~kR~qk~e~r~a~r~~a~~~~Ke~kk~~  119 (130)
                      +|||+|||+||++|+++|||+|||+.|++++||+++||+++++
T Consensus        81 K~qRaivg~sLe~I~~kR~~k~evr~aar~~a~r~~Ke~~~~~  123 (125)
T PTZ00033         81 KVQRAIVGADLSYIQEVRAYVQKVDRSAKAKAVRAEKAERKAA  123 (125)
T ss_pred             cchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999998865

>KOG1722|consensus

Probab=100.00  E-value=3e-58  Score=350.59  Aligned_cols=127  Identities=67%  Similarity=1.068  Sum_probs=121.6

Q ss_pred             CceeecccCCCCccCCCcceEEeecCceEEEechhHHhhhhcccCCccchhhHHHHHHhcccchHHHHHHhhccccc-hh
Q psy4232           1 MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQKKGQEEEATRKRTRRTHK-FQ   79 (130)
Q Consensus         1 mk~~~C~Fsg~~IyPG~G~~~Vr~Dgkv~~F~ssKc~~~~~~krnPrki~WT~~yRr~~KK~~~~~~~kkr~rr~~K-~~   79 (130)
                      |++|+|+||||+||||||++|||.||+||.|+|+||+++|++++|||+|.||++||+.|+||.++|.+++|++++++ ||
T Consensus         1 MKvElCsFSG~KIyPG~G~r~vR~D~Kvf~Fln~Kc~~~f~~rrnPr~l~WTvLyR~khkKg~~ee~~kkrtrrt~k~~q   80 (155)
T KOG1722|consen    1 MKVELCSFSGYKIYPGHGRRFVRGDGKVFRFLNSKCESLFLQRRNPRRLAWTVLYRKKHKKGIQEEAAKKRTRRTVKKFQ   80 (155)
T ss_pred             CceeEeeccCceecCCCceeEEecCCeeeeehhhhhHHHHHhccChhhhhHHHHHHHHhhcchhHHHHHHHhhhhhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999776 99


Q ss_pred             hhHHHhhHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q psy4232          80 RAIVGASINDILAKRNVKPEIRKAQREQAIKAAKEQKRAQKEAKKPPP  127 (130)
Q Consensus        80 Raivg~sle~I~~kR~qk~e~r~a~r~~a~~~~Ke~kk~~~~~kk~~~  127 (130)
                      |+|||+||++|+++|||+||||+||||||++++||+.++.++++++.+
T Consensus        81 RaI~GasL~~I~~KRn~kpevR~a~Re~alK~aKe~~ka~k~ak~A~K  128 (155)
T KOG1722|consen   81 RAIVGASLDVILEKRNQKPEVRKAAREAALKKAKEKKKATKAAKKAKK  128 (155)
T ss_pred             hhhccccHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            999999999999999999999999999999999999988877765443

>PF01246 Ribosomal_L24e: Ribosomal protein L24e; InterPro: IPR000988 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=2.6e-40  Score=226.53  Aligned_cols=71  Identities=65%  Similarity=1.158  Sum_probs=56.9

Q ss_pred             CceeecccCCCCccCCCcceEEeecCceEEEechhHHhhhhcccCCccchhhHHHHHHhcccchHHHHHHh
Q psy4232           1 MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQKKGQEEEATRKR   71 (130)
Q Consensus         1 mk~~~C~Fsg~~IyPG~G~~~Vr~Dgkv~~F~ssKc~~~~~~krnPrki~WT~~yRr~~KK~~~~~~~kkr   71 (130)
                      |++++|+|||++||||||.|||++||++|+|||+||++||++++|||+|.||++||++|||+++++++++|
T Consensus         1 mk~~~C~Fsg~~I~PG~G~~~Vr~DG~v~~F~s~Kc~~~~~~krnPrkl~WT~~~Rr~~kK~~~~~~~kkr   71 (71)
T PF01246_consen    1 MKTEKCSFSGYKIYPGHGKMYVRNDGKVFYFCSSKCEKLFKLKRNPRKLKWTVAYRRQHKKGQSEEAAKKR   71 (71)
T ss_dssp             SSSEE-TTT-SEE-SSSSEEEE-TTS-EEEESSHHHHHHHHTT--GGGSTTSTTTCHHH-----SSSSSSS
T ss_pred             CceEEecccCCccCCCCCeEEEecCCCeEEEeCHHHHHHHHccCCcccchhHHHHHHHhCchhhhhHhhcC
Confidence            89999999999999999999999999999999999999999999999999999999999999999988654

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaeabacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families [] consists of mammalian ribosomal protein L24; yeast ribosomal protein L30A/B (Rp29) (YL21); Kluyveromyces lactis ribosomal protein L30; Arabidopsis thaliana ribosomal protein L24 homolog; Haloarcula marismortui ribosomal protein HL21/HL22; and Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ1201. These proteins have 60 to 160 amino-acid residues. This entry represents proteins related to the L24e ribosomal proteins.; PDB: 2ZKR_u 1VQ9_U 1VQL_U 1KD1_V 1VQP_U 3CCM_U 3CD6_U 3CCL_U 3CCR_U 1Q86_V ....

>PRK14891 50S ribosomal protein L24e/unknown domain fusion protein; Provisional

Probab=100.00  E-value=6.6e-37  Score=229.90  Aligned_cols=63  Identities=32%  Similarity=0.707  Sum_probs=61.5

Q ss_pred             CceeecccCCCCccCCCcceEEeecCceEEEechhHHhhhhcccCCccchhhHHHHHHhcccc
Q psy4232           1 MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQKKGQ   63 (130)
Q Consensus         1 mk~~~C~Fsg~~IyPG~G~~~Vr~Dgkv~~F~ssKc~~~~~~krnPrki~WT~~yRr~~KK~~   63 (130)
                      |++++|+|||++||||||+||||+||+||+||||||++||+++||||+|+||++||+.++|..
T Consensus         2 m~~e~CsFcG~kIyPG~G~~fVR~DGkvf~FcssKC~k~f~~kRnPRKlkWT~~yRk~~g~~~   64 (131)
T PRK14891          2 VETRTCDYTGEEIEPGTGTMFVRKDGTVLHFVDSKCEKNYDLGREARDLEWTEAGRAEKGPAA   64 (131)
T ss_pred             CceeeecCcCCcccCCCCcEEEecCCCEEEEecHHHHHHHHccCCCccchhHHHHHHHcCchh
Confidence            799999999999999999999999999999999999999999999999999999999999974

>COG2075 RPL24A Ribosomal protein L24E [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.1e-35  Score=201.05  Aligned_cols=65  Identities=49%  Similarity=0.889  Sum_probs=63.0

Q ss_pred             CceeecccCCCCccCCCcceEEeecCceEEEechhHHhhhhcccCCccchhhHHHHHHhcccchH
Q psy4232           1 MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQKKGQEE   65 (130)
Q Consensus         1 mk~~~C~Fsg~~IyPG~G~~~Vr~Dgkv~~F~ssKc~~~~~~krnPrki~WT~~yRr~~KK~~~~   65 (130)
                      |+++.|+|||.+||||+|+|||++||++|+|||+||+++|.+++|||+|+||..||++++++..+
T Consensus         1 m~~~~CsFcG~~I~PGtG~m~Vr~Dg~v~~FcssKc~k~~~~~rnPRk~~WT~~~~~~~~k~~~~   65 (66)
T COG2075           1 MKVRVCSFCGKKIEPGTGIMYVRNDGKVLRFCSSKCEKLFKLGRNPRKLKWTKKYRKMHKKEIKE   65 (66)
T ss_pred             CceeEecCcCCccCCCceEEEEecCCeEEEEechhHHHHHHccCCCccchhHHHHHHHHHhhhcc
Confidence            78999999999999999999999999999999999999999999999999999999999998764

>cd00472 Ribosomal_L24e_L24 Ribosomal protein L24e/L24 is a ribosomal protein found in eukaryotes (L24) and in archaea (L24e, distinct from archaeal L24)

Probab=100.00  E-value=2.5e-34  Score=188.03  Aligned_cols=54  Identities=59%  Similarity=1.129  Sum_probs=52.7

Q ss_pred             CceeecccCCCCccCCCcceEEeecCceEEEechhHHhhhhcccCCccchhhHH
Q psy4232           1 MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVL   54 (130)
Q Consensus         1 mk~~~C~Fsg~~IyPG~G~~~Vr~Dgkv~~F~ssKc~~~~~~krnPrki~WT~~   54 (130)
                      |++++|+|||++||||||+|||++||++|+|||+||+++|++++|||+|+||++
T Consensus         1 m~~~~C~f~g~~I~PG~G~~~Vr~Dgkv~~F~s~Kc~~~~~~krnPRkv~WT~~   54 (54)
T cd00472           1 MKTEKCSFCGYKIYPGHGKMYVRNDGKVFRFCSSKCEKNFLRKRNPRKLKWTVA   54 (54)
T ss_pred             CcEEEecCcCCeecCCCccEEEecCCCEEEEECHHHHHHHHCcCCCCcceeecC
Confidence            899999999999999999999999999999999999999999999999999973

L24e/L24 is located on the surface of the large subunit, adjacent to proteins L14 and L3, and near the translation factor binding site. L24e/L24 appears to play a role in the kinetics of peptide synthesis, and may be involved in interactions between the large and small subunits, either directly or through other factors. In mouse, a deletion mutation in L24 has been identified as the cause for the belly spot and tail (Bst) mutation that results in disrupted pigmentation, somitogenesis and retinal cell fate determination. L24 may be an important protein in eukaryotic reproduction: in shrimp, L24 expression is elevated in the ovary, suggesting a role in oogenesis, and in Arabidopsis, L24 has been proposed to have a specific function in gynoecium development. No protein with sequence or structural homology to L24e/L24 has been identifi

>PRK00807 50S ribosomal protein L24e; Validated

Probab=99.96  E-value=4.9e-30  Score=166.18  Aligned_cols=51  Identities=45%  Similarity=0.864  Sum_probs=49.5

Q ss_pred             eeecccCCCCccCCCcceEEeecCceEEEechhHHhhhhcccCCccchhhH
Q psy4232           3 LGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTV   53 (130)
Q Consensus         3 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkv~~F~ssKc~~~~~~krnPrki~WT~   53 (130)
                      +++|+|||++||||||++||++||++|+|||+||+++|++++|||+|+||.
T Consensus         1 ~~~C~fcG~~I~pg~G~~~vr~Dgkv~~Fcs~KC~~~f~~~~nprk~~WT~   51 (52)
T PRK00807          1 TRTCSFCGKEIEPGTGKMYVKKDGTILYFCSSKCEKNYKLGRVPRKLKWTK   51 (52)
T ss_pred             CcccCCCCCeEcCCCCeEEEEeCCcEEEEeCHHHHHHHHccCCCCcccccc
Confidence            468999999999999999999999999999999999999999999999996

>KOG1723|consensus

Probab=99.95  E-value=2.2e-28  Score=189.66  Aligned_cols=91  Identities=35%  Similarity=0.725  Sum_probs=85.6

Q ss_pred             CceeecccCCCCccCCCcceEEeecCceEEEechhHHhhhhcccCCccchhhHHHHHHhcccchHHHH---HHhhccccc
Q psy4232           1 MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQKKGQEEEAT---RKRTRRTHK   77 (130)
Q Consensus         1 mk~~~C~Fsg~~IyPG~G~~~Vr~Dgkv~~F~ssKc~~~~~~krnPrki~WT~~yRr~~KK~~~~~~~---kkr~rr~~K   77 (130)
                      |+++.|+||+.+||||||.|||+||.++|.||.++|+++|.+++||+++.||.++|++++++...+.+   .++++.+++
T Consensus         1 Mri~kc~fcss~IyPgHgi~Fv~Nd~k~f~Fc~skc~k~f~~k~nPrk~~~tka~rKaagre~~~d~~~e~~~rrn~~~~   80 (162)
T KOG1723|consen    1 MRIEKCYFCSSPIYPGHGIMFVRNDCKVFRFCKSKCHKNFKQKKNPRKVGWTKAFRKAAGRELVTDSTFEFEKRRNVPRK   80 (162)
T ss_pred             CceeeeeeecCcccCCCceEEEecCcchhHHHHhhhhhhhhhhcCCCccchHHHHHHHhhhhHhhhhhHHHHHhcCcchh
Confidence            89999999999999999999999999999999999999999999999999999999999999988877   557788999


Q ss_pred             hhhhHHHhhHHHHH
Q psy4232          78 FQRAIVGASINDIL   91 (130)
Q Consensus        78 ~~Raivg~sle~I~   91 (130)
                      |+|+.++.|++.++
T Consensus        81 y~r~~~~~Ti~a~k   94 (162)
T KOG1723|consen   81 YDRELINKTIDAMK   94 (162)
T ss_pred             hcccchhhHHHHHH
Confidence            99999999986554

>smart00746 TRASH metallochaperone-like domain

Probab=98.66  E-value=4.1e-08  Score=53.79  Aligned_cols=37  Identities=51%  Similarity=0.978  Sum_probs=33.7

Q ss_pred             cccCCCCcc-CCCcceEEeecCceEEEechhHHhhhhcc
Q psy4232           6 CAYSGYKIY-PGHGKTLVKVDGKSFTFINSKCESSFKMR   43 (130)
Q Consensus         6 C~Fsg~~Iy-PG~G~~~Vr~Dgkv~~F~ssKc~~~~~~k   43 (130)
                      |.+||..|+ |+.+..++ .||++++|||..|...|...
T Consensus         1 c~~C~~~~~~~~~~~~~~-~~g~~~~FCs~~c~~~~~~~   38 (39)
T smart00746        1 CSFCGKDIYNPGTGIMVV-NDGKVFYFCSSKCLSKFKKK   38 (39)
T ss_pred             CCCCCCCccCCCCceEEE-ECCEEEEEeCHHHHHHHHhc
Confidence            899999999 88899888 99999999999999988753

>PF04945 YHS: YHS domain; InterPro: IPR007029 This short presumed domain is about 50 amino acid residues long

Probab=97.27  E-value=0.0003  Score=43.63  Aligned_cols=36  Identities=25%  Similarity=0.615  Sum_probs=26.8

Q ss_pred             cccCCCCccCCCcceEEeecCceEEEechhHHhhhhc
Q psy4232           6 CAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKM   42 (130)
Q Consensus         6 C~Fsg~~IyPG~G~~~Vr~Dgkv~~F~ssKc~~~~~~   42 (130)
                      +..||-.| ||.....+.-+|++++|||.-|...|..
T Consensus         3 DPvcg~~v-~~~~~~~~~y~G~~Y~FCS~~C~~~F~~   38 (47)
T PF04945_consen    3 DPVCGMKV-PGNAAYSVEYNGRTYYFCSEGCKEKFEA   38 (47)
T ss_dssp             B-GGG-BE------EEEEETTEEEEESSHHHHHHHHC
T ss_pred             CCCCCCEE-ccCccEEEEECCEEEEEcCHHHHHHHHH
Confidence            56799999 9999999999999999999999999864

It often contains two cysteines that may be functionally important. This domain is found in copper transporting ATPases, some phenol hydroxylases and in a set of uncharacterised membrane proteins including Q9CNI0 from SWISSPROT. This domain is named after three of the most conserved amino acids it contains. The domain may be metal binding, possibly copper ions. This domain is duplicated in some copper transporting ATPases.; PDB: 3U52_B 2INN_A 2INP_B 1T0Q_A 2RDB_A 1T0R_A 2IND_A 1T0S_A 2INC_A 3DHI_A ....

>PF08394 Arc_trans_TRASH: Archaeal TRASH domain; InterPro: IPR013603 This region is found in the C terminus of a number of archaeal transcriptional regulators

Probab=97.21  E-value=0.00055  Score=41.91  Aligned_cols=36  Identities=33%  Similarity=0.644  Sum_probs=30.8

Q ss_pred             cccCCCCccCCCcceEEeecCceEEEechhHHhhhhcc
Q psy4232           6 CAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMR   43 (130)
Q Consensus         6 C~Fsg~~IyPG~G~~~Vr~Dgkv~~F~ssKc~~~~~~k   43 (130)
                      |.+||..|. |.+..| +.+|++++||..-|.+-|..+
T Consensus         1 Cd~CG~~I~-~eP~~~-k~~~~~y~fCC~tC~~~fk~k   36 (37)
T PF08394_consen    1 CDYCGGEIT-GEPIVV-KIGNKVYYFCCPTCLSQFKKK   36 (37)
T ss_pred             CCccCCccc-CCEEEE-EECCeEEEEECHHHHHHHHhh
Confidence            899999998 777654 559999999999999998765

It is thought to function as a metal-sensing regulatory module [].

>PF06467 zf-FCS: MYM-type Zinc finger with FCS sequence motif; InterPro: IPR010507 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.38  E-value=0.0011  Score=39.79  Aligned_cols=37  Identities=30%  Similarity=0.410  Sum_probs=26.6

Q ss_pred             eeecccCCCCccCCC-cceEEeecCceEEEechhHHhhh
Q psy4232           3 LGLCAYSGYKIYPGH-GKTLVKVDGKSFTFINSKCESSF   40 (130)
Q Consensus         3 ~~~C~Fsg~~IyPG~-G~~~Vr~Dgkv~~F~ssKc~~~~   40 (130)
                      ...|++|+..|+.+. + .-+..||.+..|||.-|...|
T Consensus         6 ~~~C~~C~~~~~~~~~~-~~~~~~g~~~~FCS~~C~~~y   43 (43)
T PF06467_consen    6 MKTCSYCKKYIPNKPTM-IEVQYDGKMKQFCSQSCLSSY   43 (43)
T ss_dssp             CEE-TTT--EEECCC-----EE-TTTTSCCSSHHHHHHH
T ss_pred             CCcCcccCCcccCCCcc-ccccccCcccChhCHHHHhhC
Confidence            457999999999888 5 888999999999999998765

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. MYM-type zinc fingers were identified in MYM family proteins []. Human protein Q14202 from SWISSPROT is involved in a chromosomal translocation and may be responsible for X-linked retardation in XQ13.1 []. Q9UBW7 from SWISSPROT is also involved in disease. In myeloproliferative disorders it is fused to FGF receptor 1 []; in atypical myeloproliferative disorders it is rearranged []. Members of the family generally are involved in development. This Zn-finger domain functions as a transcriptional trans-activator of late vaccinia viral genes, and orthologues are also found in all nucleocytoplasmic large DNA viruses, NCLDV. This domain is also found fused to the C termini of recombinases from certain prokaryotic transposons []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2L8E_A 2DAS_A.

>PF05573 NosL: NosL; InterPro: IPR008719 NosL is one of the accessory proteins of the nos (nitrous oxide reductase) gene cluster

Probab=95.23  E-value=0.014  Score=43.99  Aligned_cols=39  Identities=26%  Similarity=0.514  Sum_probs=17.3

Q ss_pred             eecccCCCCc--cCCC-cceEEeecCceEEEechhHHhhhhc
Q psy4232           4 GLCAYSGYKI--YPGH-GKTLVKVDGKSFTFINSKCESSFKM   42 (130)
Q Consensus         4 ~~C~Fsg~~I--yPG~-G~~~Vr~Dgkv~~F~ssKc~~~~~~   42 (130)
                      ..|.+||-.|  |||. |.++..+.+++++|||-.|.-.|.+
T Consensus        26 ~~C~~CgM~i~d~p~~~aqi~~~~g~~~~~Fdsi~c~~~~~~   67 (149)
T PF05573_consen   26 DRCPVCGMVISDYPGFAAQIIYKDGEKVYKFDSIGCMFAYLK   67 (149)
T ss_dssp             -----------------EEEEETT-SSEEEES-HHHHHHHHT
T ss_pred             CccCCCCCEeccCCCccEEEEECCCCEEEEECCHHHHHHHHh
Confidence            5799999999  6885 5555554449999999999877764

NosL is a monomeric protein of 18,540 MW that specifically and stoichiometrically binds Cu(I). The copper ion in NosL is ligated by a Cys residue, and one Met and one His are thought to serve as the other ligands. It is possible that NosL is a copper chaperone involved in metallocentre assembly []. This entry also contains HTH-type transcriptional repressors, including YcnK. YcnK may act as a negative transcriptional regulator of YcnJ in the presence of copper and may use copper as a corepressor. The gene, ycnK, is significantly induced under copper-limiting conditions.; PDB: 2HQ3_A 2HPU_A.

>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown

Probab=94.92  E-value=0.0055  Score=40.84  Aligned_cols=26  Identities=27%  Similarity=0.621  Sum_probs=22.5

Q ss_pred             eecccCCCCccCCCcceEEeecCceEEEechhHHhhhh
Q psy4232           4 GLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFK   41 (130)
Q Consensus         4 ~~C~Fsg~~IyPG~G~~~Vr~Dgkv~~F~ssKc~~~~~   41 (130)
                      ..|-+||.+|+|.            -.|||.+|+..|.
T Consensus         4 kHC~~CG~~Ip~~------------~~fCS~~C~~~~~   29 (59)
T PF09889_consen    4 KHCPVCGKPIPPD------------ESFCSPKCREEYR   29 (59)
T ss_pred             CcCCcCCCcCCcc------------hhhhCHHHHHHHH
Confidence            4699999999994            5799999998876

They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.

>COG3350 Uncharacterized conserved protein [Function unknown]

Probab=94.52  E-value=0.061  Score=35.38  Aligned_cols=39  Identities=26%  Similarity=0.499  Sum_probs=31.5

Q ss_pred             cccCCCCccCCCcceEEeecCceEEEechhHHhhhhcccCC
Q psy4232           6 CAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNP   46 (130)
Q Consensus         6 C~Fsg~~IyPG~G~~~Vr~Dgkv~~F~ssKc~~~~~~krnP   46 (130)
                      -..||..|.+-.-..=.--+|++++|||..|...|.  .||
T Consensus         5 DPVcgm~v~~~~a~~k~~Y~GktYYFcse~~~~~F~--~~P   43 (53)
T COG3350           5 DPVCGMKVDNENAEYKSSYGGKTYYFCSEECKEKFK--DNP   43 (53)
T ss_pred             cCCcCccccccccceeEEeCCEEEEEeCHHHHHHHH--HCH
Confidence            356888888777777777899999999999988875  455

>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function

Probab=90.84  E-value=0.077  Score=38.93  Aligned_cols=29  Identities=28%  Similarity=0.229  Sum_probs=22.8

Q ss_pred             eeecccCCCCccCCCcceEEeecCceEEEe
Q psy4232           3 LGLCAYSGYKIYPGHGKTLVKVDGKSFTFI   32 (130)
Q Consensus         3 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkv~~F~   32 (130)
                      ...|++||.+||-|-...|..+ |-|.|-|
T Consensus         2 kWkC~iCg~~I~~gqlFTF~~k-G~VH~~C   30 (101)
T PF09943_consen    2 KWKCYICGKPIYEGQLFTFTKK-GPVHYEC   30 (101)
T ss_pred             ceEEEecCCeeeecceEEEecC-CcEeHHH
Confidence            3579999999998888777777 7766544

>cd01057 AAMH_A Aromatic and Alkene Monooxygenase Hydroxylase, subunit A, ferritin-like diiron-binding domain

Probab=87.17  E-value=0.66  Score=41.50  Aligned_cols=51  Identities=20%  Similarity=0.452  Sum_probs=39.1

Q ss_pred             ecccCCCCccC----CCcc-eEEeecCceEEEechhHHhhhhcccCCccc--hhhHHHHH
Q psy4232           5 LCAYSGYKIYP----GHGK-TLVKVDGKSFTFINSKCESSFKMRRNPRKV--TWTVLYRR   57 (130)
Q Consensus         5 ~C~Fsg~~IyP----G~G~-~~Vr~Dgkv~~F~ssKc~~~~~~krnPrki--~WT~~yRr   57 (130)
                      +|..||-+|-|    +... .-.--||+.++|||--|+..|.+  +|-+-  .|+..-|-
T Consensus       382 ~c~vC~~p~~~~~~~~~~~~~~~ey~G~~y~FCS~~C~~~F~~--ePerY~~~~~~~~~~  439 (465)
T cd01057         382 LCNVCQVPCVFTEDLTAEAPRVLEYNGRKYHFCSEGCEWIFEQ--EPERYAGHWNPVDRF  439 (465)
T ss_pred             CCCCCCCeeccccCcccccceEEEECCEEEEecCHHHHHHHHH--CHHHHhcCCCHHHHH
Confidence            79999999985    4443 44566999999999999999986  78766  45554443

Aromatic and Alkene Monooxygenase Hydroxylases, subunit A (AAMH_A). Subunit A of the soluble hydroxylase of multicomponent, aromatic and alkene monooxygenases are members of a superfamily of ferritin-like iron-storage proteins. AAMH exists as a hexamer (an alpha2-beta2-gamma2 homodimer) with each alpha-subunit housing one nonheme diiron center embedded in a four-helix bundle. The N-terminal domain of the alpha- and noncatalytic beta-subunits possess nearly identical folds, however, the beta-subunit lacks critical diiron ligands and a C-terminal domain found in the alpha-subunit. Methane monooxygenase is a multicomponent enzyme found in methanotrophic bacteria that catalyzes the hydroxylation of methane and higher alkenes (as large as octane). Phenol monooxygenase, found in a diverse group of bacteria, catalyses the hydroxylation of phenol, chloro- and methyl-phenol and naphtho

>COG4314 NosL Predicted lipoprotein involved in nitrous oxide reduction [Energy production and conversion]

Probab=86.81  E-value=0.74  Score=36.63  Aligned_cols=46  Identities=17%  Similarity=0.455  Sum_probs=37.2

Q ss_pred             eecccCCCCc--cCCC-cceEEeecCceEEEechhHHhhhh-cccCCccc
Q psy4232           4 GLCAYSGYKI--YPGH-GKTLVKVDGKSFTFINSKCESSFK-MRRNPRKV   49 (130)
Q Consensus         4 ~~C~Fsg~~I--yPG~-G~~~Vr~Dgkv~~F~ssKc~~~~~-~krnPrki   49 (130)
                      ..|.|||-.|  |||- |.+|..-+-...||||.+--=.|. +=-+|+.|
T Consensus        36 s~g~ycgMnl~ehpGPKgQi~l~g~~qP~wfsst~e~f~~tllPEepk~i   85 (176)
T COG4314          36 SMGHYCGMNLLEHPGPKGQIILNGKPQPIWFSSTREMFGFTLLPEEPKGI   85 (176)
T ss_pred             ccccccceeeecCCCCcceEeeCCCCCceeeecHHHHhhHhcCCcCcCce
Confidence            3699999877  7997 999999888899999999766554 66667655

>PF04570 DUF581: Protein of unknown function (DUF581); InterPro: IPR007650 This is a family of uncharacterised proteins

Probab=80.34  E-value=1.7  Score=28.89  Aligned_cols=35  Identities=23%  Similarity=0.437  Sum_probs=28.2

Q ss_pred             eecccCCCCccCCCcceEEeecCceEEEechhHHhhhh
Q psy4232           4 GLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFK   41 (130)
Q Consensus         4 ~~C~Fsg~~IyPG~G~~~Vr~Dgkv~~F~ssKc~~~~~   41 (130)
                      ..|++|..+|-||..+-.-|-|.   -|||.-|+...+
T Consensus        17 ~~C~~C~k~L~~~~DiymYrGd~---aFCS~ECR~~qi   51 (58)
T PF04570_consen   17 SFCYLCKKKLDPGKDIYMYRGDK---AFCSEECRSQQI   51 (58)
T ss_pred             HHHHccCCCCCCCCCeeeecccc---ccccHHHHHHHH
Confidence            46999999999999876666664   499999987643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	130
2zkr_u	157	Structure Of A Mammalian Ribosomal 60s Subunit With		4e-32
3izs_Z	155	Localization Of The Large Subunit Ribosomal Protein		1e-19
3izr_Z	162	Localization Of The Large Subunit Ribosomal Protein		1e-16
1s1i_S	56	Structure Of The Ribosomal 80s-Eef2-Sordarin Comple		2e-12
4a17_T	158	T.Thermophila 60s Ribosomal Subunit In Complex With		2e-09
3jyw_S	45	Structure Of The 60s Proteins For Eukaryotic Riboso		5e-09
3j21_V	66	Promiscuous Behavior Of Proteins In Archaeal Riboso		7e-08
3zf7_Y	125	High-resolution Cryo-electron Microscopy Structure		4e-06
2qa4_U	67	A More Complete Structure Of The The L7L12 STALK OF		6e-06
1ffk_R	66	Crystal Structure Of The Large Ribosomal Subunit Fr		7e-06
3g4s_U	53	Co-Crystal Structure Of Tiamulin Bound To The Large		1e-05

>pdb|2ZKR|UU Chain u, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 157

Iteration: 1
 Score =  132 bits (333), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 59/100 (59%), Positives = 73/100 (73%)
Query: 1   MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQK 60
           MK+ LC++SGYKIYPGHG+   + DGK F F+N+KCES+F  +RNPR++ WTVLYRRK K
Sbjct: 1   MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHK 60
Query: 61  KGQXXXXXXXXXXXXHKFQRAIVGASINDILAKRNVKPEI 100
           KGQ             KFQRAI GAS+ DI+AKRN KPE+
Sbjct: 61  KGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEV 100

>pdb|3IZS|Z Chain Z, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 155

Iteration: 1
 Score = 91.7 bits (226), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 45/100 (45%), Positives = 61/100 (61%)
Query: 1   MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQK 60
           MK+ + ++SG KIYPG G   V+ D K F F NSK  S FK R+NPR++ WTVL+R+  K
Sbjct: 1   MKVEIDSFSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRIAWTVLFRKHHK 60
Query: 61  KGQXXXXXXXXXXXXHKFQRAIVGASINDILAKRNVKPEI 100
           KG              K QR I GAS++ I  +R++KPE+
Sbjct: 61  KGITEEVAKKRSRKTVKAQRPITGASLDLIKERRSLKPEV 100

>pdb|3IZR|Z Chain Z, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 162

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Query: 1   MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQK 60
           +K  LC +SG KIYPG G   ++ D + F F NSKC+  F  R  P K+TWT +YR++ K
Sbjct: 3   LKTELCRFSGQKIYPGKGIRFIRADSQVFLFANSKCKRYFHNRLKPAKLTWTAMYRKQHK 62
Query: 61  KGQXXXXXXXXXXXXHK-FQRAIVGASINDILAKRNVKPEI 100
           K               K + R+IVGA++  I  KR+ KPE+
Sbjct: 63  KDIHAEAVKKRRRTTKKPYSRSIVGATLEVIQKKRSEKPEV 103

>pdb|1S1I|S Chain S, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h. Length = 56

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 39/56 (69%)
Query: 1  MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYR 56
          MK+ + ++SG KIYPG G   V+ D K F F NSK  S FK R+NPR++ WTVL+R
Sbjct: 1  MKVEIDSFSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRIAWTVLFR 56

>pdb|4A17|T Chain T, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 158

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 1  MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFIN--SKCESSFKMRRNPRKVTWTVLYRRK 58
          ++ G C++  Y+IYPG G+  +  DG+ F F+   +KC S  K++   +K+TWT+  RR 
Sbjct: 3  VRTGTCSFCEYRIYPGRGQRFIAKDGRGFFFLTKKAKCLSLRKVK--AQKITWTIARRRL 60
Query: 59 QKKGQXXXXXXXXXXXXHKFQRAIVGASINDILAKRNV 96
           KK +                RAIVG S+ +I  ++N+
Sbjct: 61 WKKVKATDIAQKKKKRNVTVARAIVGISLEEINRRKNL 98

>pdb|3JYW|S Chain S, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 45

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 25/45 (55%), Positives = 30/45 (66%)
Query: 8  YSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWT 52
          +SG KIYPG G   V+ D K F F NSK  S FK R+NPR++ WT
Sbjct: 1  FSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRIAWT 45

>pdb|3J21|V Chain V, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 66

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 2  KLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYR--RKQ 59
          +  +C+Y G    PG GK  V+ DG+   F + KCE  + M RNPRK+ WT  Y+  R Q
Sbjct: 3  RWNVCSYCGKPFEPGTGKMYVRNDGRVLFFCSRKCERYYFMGRNPRKLKWTKAYQEARLQ 62
Query: 60 KKGQ 63
          + G+
Sbjct: 63 RGGE 66

>pdb|3ZF7|Y Chain Y, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 125

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 1  MKLGLCAYSGYKIYPGHGKTLVKVDGKS----FTFINSKCESSFKMRRNPRKVTWTVLYR 56
          M+   C +S + ++PGHG+  V     S     TF   KC + +  ++NPR + WT  YR
Sbjct: 1  MRTIDCEFSHFAVHPGHGRRYVPFAFLSTKPVLTFARPKCFAMYMRKKNPRFIAWTRTYR 60
Query: 57 RKQKKGQXXXXXXXXXXXXHKFQRAIVGASINDI 90
          R  +K               + +RAIVGA ++ I
Sbjct: 61 RIHRKTTTDRVGRRRAARTVRAERAIVGAELSYI 94

>pdb|2QA4|U Chain U, A More Complete Structure Of The The L7L12 STALK OF THE Haloarcula Marismortui 50s Large Ribosomal Subunit Length = 67

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 29/58 (50%)
Query: 6  CAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQKKGQ 63
          C Y G  I PG G   V  DG +  F +SKCE++  + R  R + WT   R +  + +
Sbjct: 7  CDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTDTARGEAGEAE 64

>pdb|1FFK|R Chain R, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 66

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 29/58 (50%)
Query: 6  CAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQKKGQ 63
          C Y G  I PG G   V  DG +  F +SKCE++  + R  R + WT   R +  + +
Sbjct: 6  CDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTDTARGEAGEAE 63

>pdb|3G4S|U Chain U, Co-Crystal Structure Of Tiamulin Bound To The Large Ribosomal Subunit Length = 53

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 26/51 (50%)
Query: 6  CAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYR 56
          C Y G  I PG G   V  DG +  F +SKCE++  + R  R + WT   R
Sbjct: 3  CDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTDTAR 53
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	130
2zkr_u	157	60S ribosomal protein L24; protein-RNA complex, 60	4e-32
4a17_T	158	RPL24, 60S ribosomal protein L21; eukaryotic ribos	2e-29
3izc_Z	155	60S ribosomal protein RPL24 (L24E); eukaryotic rib	3e-29
3iz5_Z	162	60S ribosomal protein L24 (L24E); eukaryotic ribos	5e-28
1vq8_U	66	50S ribosomal protein L24E; ribosome 50S, protein-	1e-25
3jyw_S	45	60S ribosomal protein L24(A); eukaryotic ribosome,	9e-21

>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 157

 Score =  110 bits (275), Expect = 4e-32
 Identities = 83/128 (64%), Positives = 103/128 (80%)

Query: 1   MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQK 60
           MK+ LC++SGYKIYPGHG+   + DGK F F+N+KCES+F  +RNPR++ WTVLYRRK K
Sbjct: 1   MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHK 60

Query: 61  KGQEEEATRKRTRRTHKFQRAIVGASINDILAKRNVKPEIRKAQREQAIKAAKEQKRAQK 120
           KGQ EE  +KRTRR  KFQRAI GAS+ DI+AKRN KPE+RKAQREQAI+AAKE K+A++
Sbjct: 61  KGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQ 120

Query: 121 EAKKPPPP 128
            +KK    
Sbjct: 121 ASKKTAMA 128

>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_T 4a1c_T 4a1e_T Length = 158

 Score =  103 bits (258), Expect = 2e-29
 Identities = 39/130 (30%), Positives = 72/130 (55%)

Query: 1   MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQK 60
           ++ G C++  Y+IYPG G+  +  DG+ F F+  K +     +   +K+TWT+  RR  K
Sbjct: 3   VRTGTCSFCEYRIYPGRGQRFIAKDGRGFFFLTKKAKCLSLRKVKAQKITWTIARRRLWK 62

Query: 61  KGQEEEATRKRTRRTHKFQRAIVGASINDILAKRNVKPEIRKAQREQAIKAAKEQKRAQK 120
           K +  +  +K+ +R     RAIVG S+ +I  ++N+    +KA+ E+A++  K++K    
Sbjct: 63  KVKATDIAQKKKKRNVTVARAIVGISLEEINRRKNLDASHKKAEAEKAVRELKQKKANDI 122

Query: 121 EAKKPPPPTK 130
           E K+     +
Sbjct: 123 EKKRADRKLQ 132

>1vq8_U 50S ribosomal protein L24E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.39.1.6 PDB: 1giy_R 1jj2_T 1k73_V* 1k8a_V* 1k9m_V* 1kc8_V* 1kd1_V* 1kqs_T* 1m1k_V* 1m90_V* 1ml5_r* 1n8r_V* 1nji_V* 1q7y_V* 1q81_V* 1q82_V* 1q86_V* 1qvf_T 1qvg_T 1s72_U* ... Length = 66

 Score = 91.0 bits (226), Expect = 1e-25
 Identities = 21/64 (32%), Positives = 32/64 (50%)

Query: 2  KLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQKK 61
          +   C Y G  I PG G   V  DG +  F +SKCE++  + R  R + WT   R +  +
Sbjct: 2  RTRECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTDTARGEAGE 61

Query: 62 GQEE 65
           ++E
Sbjct: 62 AEDE 65

>3jyw_S 60S ribosomal protein L24(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} Length = 45

 Score = 77.8 bits (192), Expect = 9e-21
 Identities = 25/45 (55%), Positives = 30/45 (66%)

Query: 8  YSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWT 52
          +SG KIYPG G   V+ D K F F NSK  S FK R+NPR++ WT
Sbjct: 1  FSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRIAWT 45

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	130
4a17_T	158	RPL24, 60S ribosomal protein L21; eukaryotic ribos	100.0
2zkr_u	157	60S ribosomal protein L24; protein-RNA complex, 60	100.0
3iz5_Z	162	60S ribosomal protein L24 (L24E); eukaryotic ribos	100.0
3izc_Z	155	60S ribosomal protein RPL24 (L24E); eukaryotic rib	100.0
1vq8_U	66	50S ribosomal protein L24E; ribosome 50S, protein-	100.0
3j21_V	66	50S ribosomal protein L24E; archaea, archaeal, KIN	100.0
3jyw_S	45	60S ribosomal protein L24(A); eukaryotic ribosome,	99.96
2hpu_A	175	NOSL protein; alpha beta topology, metal transport	95.54
1mty_D	512	Methane monooxygenase hydroxylase; dinuclear iron	93.85
3u52_A	511	Phenol hydroxylase component PHN; 4-helix bundle,	90.19
2l8e_A	49	Polyhomeotic-like protein 1; DNA binding protein;	86.02
3ge3_A	500	Toluene-4-monooxygenase system protein A; DIIRON h	85.01

>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_T 4a1c_T 4a1e_T

Probab=100.00  E-value=6e-62  Score=374.40  Aligned_cols=128  Identities=30%  Similarity=0.595  Sum_probs=59.7

Q ss_pred             CceeecccCCCCccCCCcceEEeecCceEEEechhHHhhhhcccCCccchhhHHHHHHhcccchHHHHHHhhccccchhh
Q psy4232           1 MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQKKGQEEEATRKRTRRTHKFQR   80 (130)
Q Consensus         1 mk~~~C~Fsg~~IyPG~G~~~Vr~Dgkv~~F~ssKc~~~~~~krnPrki~WT~~yRr~~KK~~~~~~~kkr~rr~~K~~R   80 (130)
                      |++++|+|||++||||||+|||++||+||+||||||++||++++|||+|.||++||++|+||+++|++++|++++++|||
T Consensus         3 mk~~~CsFcg~~IyPG~G~~fVr~Dgkvf~FcssKC~k~f~~krnPRkl~WT~~yRr~~kK~~~~e~~kkr~~r~vK~~R   82 (158)
T 4a17_T            3 VRTGTCSFCEYRIYPGRGQRFIAKDGRGFFFLTKKAKCLSLRKVKAQKITWTIARRRLWKKVKATDIAQKKKKRNVTVAR   82 (158)
T ss_dssp             CCCEECTTTCCEECTTCCEEEECTTSCEEEESCHHHHHHHHHTCCGGGSTTSHHHHHHHC--------------------
T ss_pred             eEEEEecCcCCcccCCCCeEEEeeCCceEEEEcHHHHHHHHcccCcccchhHHHHHHHhCCcchHHHHHHHhcCCcccch
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHhhHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q psy4232          81 AIVGASINDILAKRNVKPEIRKAQREQAIKAAKEQKRAQKEAKKPPPP  128 (130)
Q Consensus        81 aivg~sle~I~~kR~qk~e~r~a~r~~a~~~~Ke~kk~~~~~kk~~~~  128 (130)
                      +|||+||++|+++|||+||||+|||||||+++||++++++++++++++
T Consensus        83 ~ivg~sl~~I~~kR~qkpe~r~a~re~ai~~~Kekkka~~~~kka~~a  130 (158)
T 4a17_T           83 AIVGISLEEINRRKNLDASHKKAEAEKAVRELKQKKANDIEKKRADRK  130 (158)
T ss_dssp             ------------------------------------------------
T ss_pred             hhhhhhHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999988877654

>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=100.00  E-value=1.6e-61  Score=371.89  Aligned_cols=126  Identities=66%  Similarity=1.096  Sum_probs=53.0

Q ss_pred             CceeecccCCCCccCCCcceEEeecCceEEEechhHHhhhhcccCCccchhhHHHHHHhcccchHHHHHHhhccccchhh
Q psy4232           1 MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQKKGQEEEATRKRTRRTHKFQR   80 (130)
Q Consensus         1 mk~~~C~Fsg~~IyPG~G~~~Vr~Dgkv~~F~ssKc~~~~~~krnPrki~WT~~yRr~~KK~~~~~~~kkr~rr~~K~~R   80 (130)
                      |++++|+|||++||||||+|||++||+||+||||||++||++++|||+|.||++||++|+||+++|+.++|++++++|||
T Consensus         1 Mk~~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~FcssKC~k~f~~krnPRKl~WT~~yRr~~kK~~~~e~~KkR~r~~vK~~R   80 (157)
T 2zkr_u            1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVKFQR   80 (157)
T ss_dssp             ---CBCTTTCCBCCTTCCEEEECTTSCEEEESSHHHHHHHHTTCCTTTCTTCSTTC------------------------
T ss_pred             CCeeeecCcCCcccCCCceEEEeeCCcEEEEecHHHHHHHHccCCcccchhHHHHHHHhcchHHHHHHHHHhcCccceeH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHhhHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy4232          81 AIVGASINDILAKRNVKPEIRKAQREQAIKAAKEQKRAQKEAKKPP  126 (130)
Q Consensus        81 aivg~sle~I~~kR~qk~e~r~a~r~~a~~~~Ke~kk~~~~~kk~~  126 (130)
                      +|||+||++|+++|||+||||+|||||||+++||++++++++++++
T Consensus        81 ~ivg~sl~~I~~kR~qkpevr~a~r~~ai~~~Ke~kk~~~~~kk~~  126 (157)
T 2zkr_u           81 AITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTA  126 (157)
T ss_dssp             ----------------------------------------------
T ss_pred             HHHHhhHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            9999999999999999999999999999999999999988887765

>1vq8_U 50S ribosomal protein L24E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.39.1.6 PDB: 1giy_R 1jj2_T 1k73_V* 1k8a_V* 1k9m_V* 1kc8_V* 1kd1_V* 1kqs_T* 1m1k_V* 1m90_V* 1ml5_r* 1n8r_V* 1nji_V* 1q7y_V* 1q81_V* 1q82_V* 1q86_V* 1qvf_T 1qvg_T 1s72_U* ...

Probab=100.00  E-value=2.2e-40  Score=223.35  Aligned_cols=65  Identities=32%  Similarity=0.620  Sum_probs=52.9

Q ss_pred             CceeecccCCCCccCCCcceEEeecCceEEEechhHHhhhhcccCCccchhhHHHHHHhcccchH
Q psy4232           1 MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQKKGQEE   65 (130)
Q Consensus         1 mk~~~C~Fsg~~IyPG~G~~~Vr~Dgkv~~F~ssKc~~~~~~krnPrki~WT~~yRr~~KK~~~~   65 (130)
                      |++++|+|||++||||||+|||++||+||+|||+||+++|++++|||+|+||++||++|+|+++|
T Consensus         1 mk~~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~FcssKc~k~f~~krnPRkl~WT~~yRr~~kK~~~~   65 (66)
T 1vq8_U            1 PRTRECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTDTARGEAGEAEDE   65 (66)
T ss_dssp             ---CBCTTTCCBCCSSCCEEEECTTSCEEEESCHHHHHHHHTTCCGGGCTTSTTTC---------
T ss_pred             CCeeEecCcCCcccCCCceEEEeeCCcEEEEECHHHHHHHHcccCcccchhHHHHHHHhcccccc
Confidence            89999999999999999999999999999999999999999999999999999999999999876

>3j21_V 50S ribosomal protein L24E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=1.8e-36  Score=204.28  Aligned_cols=59  Identities=39%  Similarity=0.816  Sum_probs=57.4

Q ss_pred             CceeecccCCCCccCCCcceEEeecCceEEEechhHHhhhhcccCCccchhhHHHHHHh
Q psy4232           1 MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQ   59 (130)
Q Consensus         1 mk~~~C~Fsg~~IyPG~G~~~Vr~Dgkv~~F~ssKc~~~~~~krnPrki~WT~~yRr~~   59 (130)
                      |++++|+|||++||||||+|||++||+||+|||+||++||++++|||+|+||++||+..
T Consensus         2 ~~~~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~FcssKC~k~f~~krnPRkl~WT~~yRk~~   60 (66)
T 3j21_V            2 ARWNVCSYCGKPFEPGTGKMYVRNDGRVLFFCSRKCERYYFMGRNPRKLKWTKAYQEAR   60 (66)
T ss_dssp             CCCCBCTTTCSBCCTTCCEEEECSSSCEEEESSHHHHHHHHTTCCTTTCSSSHHHHHHH
T ss_pred             CceeEecCcCCcccCCCCeEEEecCCcEEEEECHHHHHHHHcCCCcccchHHHHHHHHh
Confidence            69999999999999999999999999999999999999999999999999999999864

>3jyw_S 60S ribosomal protein L24(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}

Probab=99.96  E-value=1e-30  Score=164.69  Aligned_cols=45  Identities=56%  Similarity=1.001  Sum_probs=44.7

Q ss_pred             cCCCCccCCCcceEEeecCceEEEechhHHhhhhcccCCccchhh
Q psy4232           8 YSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWT   52 (130)
Q Consensus         8 Fsg~~IyPG~G~~~Vr~Dgkv~~F~ssKc~~~~~~krnPrki~WT   52 (130)
                      |||++||||||+|||++||++|+|||+||+++|++++|||+|+||
T Consensus         1 F~g~~IyPG~G~~~Vr~Dgkvf~FcssKc~k~~~~krnPrkl~WT   45 (45)
T 3jyw_S            1 FSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRIAWT   45 (45)
T ss_dssp             CCCCCCCTTCCCEECTTTSCCCCCCSHHHHGGGTSCCCTTTCCCC
T ss_pred             CCCCcccCCCCeEEEecCCCEEEEECHHHHHHHHcCCCCccCccC
Confidence            899999999999999999999999999999999999999999998

>2hpu_A NOSL protein; alpha beta topology, metal transport; NMR {Achromobacter cycloclastes} SCOP: d.357.1.1 PDB: 2hq3_A

Probab=95.54  E-value=0.0053  Score=46.93  Aligned_cols=41  Identities=12%  Similarity=0.213  Sum_probs=20.5

Q ss_pred             eeecccCCCCc--cCCC-cceEEeecCceEEEechhHHhhhhcc
Q psy4232           3 LGLCAYSGYKI--YPGH-GKTLVKVDGKSFTFINSKCESSFKMR   43 (130)
Q Consensus         3 ~~~C~Fsg~~I--yPG~-G~~~Vr~Dgkv~~F~ssKc~~~~~~k   43 (130)
                      ...|.|||-.|  |||. |.++..+.|++++||+-.|.-.|...
T Consensus        18 ~~~C~~CgM~i~~~p~~~aqI~~~~~g~~~~F~s~~cm~~~~~~   61 (175)
T 2hpu_A           18 ETLGHYCQMNLLEHPGPKAQIFLEGSPAPLFFSQVRDAIAYARG   61 (175)
T ss_dssp             -----------------CEEEEETTCSSEEEESCHHHHHHHHTT
T ss_pred             CceeCCCCcCcccCCCccEEEEECCCCcEEEECCHHHHHHHHhc
Confidence            46899999998  4676 66666655999999999998887643

>1mty_D Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} SCOP: a.25.1.2 PDB: 1mmo_D 1xvb_A 1fyz_A 1fz0_A 1fz2_A 1fz3_A 1fz4_A 1fz5_A 1fz6_A 1fz7_A 1fz8_A 1fz9_A 1fzh_A 1fzi_A 1xmf_A 1xmg_A 1xmh_A 1xu3_A 1xu5_A 1fz1_A ...

Probab=93.85  E-value=0.039  Score=48.50  Aligned_cols=57  Identities=16%  Similarity=0.175  Sum_probs=43.3

Q ss_pred             eecccCCCCc----cCCCcceEE-eecCceEEEechhHHhhhhcccCCccc----hhhHHHHHHhcccchHH
Q psy4232           4 GLCAYSGYKI----YPGHGKTLV-KVDGKSFTFINSKCESSFKMRRNPRKV----TWTVLYRRKQKKGQEEE   66 (130)
Q Consensus         4 ~~C~Fsg~~I----yPG~G~~~V-r~Dgkv~~F~ssKc~~~~~~krnPrki----~WT~~yRr~~KK~~~~~   66 (130)
                      .+|..||-++    .||....++ --+|+.|+|||.-|+..|.  .||-+.    .|+   | .++-++.+-
T Consensus       402 ~~c~vC~~p~~~~~~~~~~~~~~~~y~G~~y~FCs~~Ck~~F~--~~PerY~~~~~~~---~-~~G~~l~~~  467 (512)
T 1mty_D          402 YIDRVSQVPFCPSLAKGASTLRVHEYNGEMHTFSDQWGERMWL--AEPERYECQNIFE---Q-YEGRELSEV  467 (512)
T ss_dssp             EECTTTCCEECTTTCSSCCCCEEEEETTEEEEESSHHHHHHHH--HCGGGCCCCCHHH---H-STTCBHHHH
T ss_pred             eeCCCCCCcccccCCCCCCceeEEEECCEEEEecCHHHHHHHH--hChHHhhhcchHH---H-hcCCCHHHH
Confidence            4799999984    457766665 6799999999999999998  688886    555   3 666444333

>3u52_A Phenol hydroxylase component PHN; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_A 2inp_A

Probab=90.19  E-value=0.16  Score=44.51  Aligned_cols=56  Identities=20%  Similarity=0.396  Sum_probs=42.2

Q ss_pred             eecccCCCCc---cCCCcc----eEEeecCceEEEechhHHhhhhcccCCccc--hhhHHHHHHhcc
Q psy4232           4 GLCAYSGYKI---YPGHGK----TLVKVDGKSFTFINSKCESSFKMRRNPRKV--TWTVLYRRKQKK   61 (130)
Q Consensus         4 ~~C~Fsg~~I---yPG~G~----~~Vr~Dgkv~~F~ssKc~~~~~~krnPrki--~WT~~yRr~~KK   61 (130)
                      -+|..|..+|   .||...    ..+--+|+.++|||.-|+..|.  .||-+.  .|+..-|-+.+-
T Consensus       397 ~~C~~Cq~P~~~~~~~~~~~~~~~~~~~~G~~y~fCs~~C~~~f~--~~Pe~y~~~~~~~~~~~~g~  461 (511)
T 3u52_A          397 QLCQVCQIPTIFTEKDAPTMLSHRQIEHEGERYHFCSDGCCDIFK--HEPEKYIQAWLPVHQIYQGN  461 (511)
T ss_dssp             CBCTTTCSBSCCEETTEEEEECCEEEEETTEEEEESSHHHHHHHH--HCHHHHTTCCCHHHHHHTTC
T ss_pred             CccCCCCCcccccCCCCCCcccceeEEECCEEEEecChHHHHHHH--HCHHHHhcccChHHHHHccC
Confidence            3799999999   456433    3344699999999999999998  677765  577766666554

>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}

Probab=86.02  E-value=0.14  Score=31.93  Aligned_cols=30  Identities=20%  Similarity=0.285  Sum_probs=23.4

Q ss_pred             eecccCCCCccCCCcceEEeecCceEEEechhHHhhh
Q psy4232           4 GLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSF   40 (130)
Q Consensus         4 ~~C~Fsg~~IyPG~G~~~Vr~Dgkv~~F~ssKc~~~~   40 (130)
                      ..|.+||..|+|..+       |+.=.|||..|+..|
T Consensus        19 ~~C~~CG~~i~~~~~-------~r~krFCS~sCR~~y   48 (49)
T 2l8e_A           19 LKCEYCGKYAPAEQF-------RGSKRFCSMTCAKRY   48 (49)
T ss_dssp             EECTTTCCEEEGGGC-------TTTSSSCSHHHHHHH
T ss_pred             CcChhccCccccccC-------CCCCccCCHHHHhhh
Confidence            469999999999763       233459999998866

>3ge3_A Toluene-4-monooxygenase system protein A; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: a.25.1.2 PDB: 3ge8_A 3dhi_A* 3dhh_A* 3dhg_A* 3i5j_A 3i63_A 3q14_A 3q2a_A* 3q3m_A* 3q3n_A* 3q3o_A* 3rmk_A* 3ri7_A

Probab=85.01  E-value=0.73  Score=40.45  Aligned_cols=54  Identities=17%  Similarity=0.316  Sum_probs=38.3

Q ss_pred             ecccCCCCcc--CCCc----ceEEeecCceEEEechhHHhhhhcccCCccch--hhHHHHHHhc
Q psy4232           5 LCAYSGYKIY--PGHG----KTLVKVDGKSFTFINSKCESSFKMRRNPRKVT--WTVLYRRKQK   60 (130)
Q Consensus         5 ~C~Fsg~~Iy--PG~G----~~~Vr~Dgkv~~F~ssKc~~~~~~krnPrki~--WT~~yRr~~K   60 (130)
                      +|..|..++-  ||+.    ...+--+|+.++|||.-|+..|.  .||-+..  |+..-|-..+
T Consensus       396 ~C~~CqvP~~~~~~~~~~~~~~~~~y~G~~y~fCs~~C~~~f~--~~Pe~y~~~~~~~~~~~~g  457 (500)
T 3ge3_A          396 VCNMSQIPLVGVPGDDWNIEVFSLEHNGRLYHFGSEVDRWVFQ--QDPVQYQNHMNIVDRFLAG  457 (500)
T ss_dssp             BCTTTCSBCBCBCGGGCBCCCEEEEETTEEEEESSHHHHHHHH--HCHHHHTTCCCHHHHHHTT
T ss_pred             cccccCCccccCCCCcccccceeeEECCEEEEecCHHHHHHHH--hChHHHhCCCCHHHHHHcc
Confidence            7999988875  4431    33344699999999999999998  6777663  6555444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	130
d1vqou1	53	g.39.1.6 (U:4-56) Ribosomal protein L24e {Archaeon	5e-22

>d1vqou1 g.39.1.6 (U:4-56) Ribosomal protein L24e {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 53

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Ribosomal protein L24e
domain: Ribosomal protein L24e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 80.1 bits (198), Expect = 5e-22
 Identities = 20/51 (39%), Positives = 26/51 (50%)

Query: 6  CAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYR 56
          C Y G  I PG G   V  DG +  F +SKCE++  + R  R + WT   R
Sbjct: 3  CDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTDTAR 53

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	130
d1vqou1	53	Ribosomal protein L24e {Archaeon Haloarcula marism	99.98

>d1vqou1 g.39.1.6 (U:4-56) Ribosomal protein L24e {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Ribosomal protein L24e
domain: Ribosomal protein L24e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.98  E-value=1.6e-34  Score=186.00  Aligned_cols=52  Identities=38%  Similarity=0.732  Sum_probs=51.1

Q ss_pred             ecccCCCCccCCCcceEEeecCceEEEechhHHhhhhcccCCccchhhHHHH
Q psy4232           5 LCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYR   56 (130)
Q Consensus         5 ~C~Fsg~~IyPG~G~~~Vr~Dgkv~~F~ssKc~~~~~~krnPrki~WT~~yR   56 (130)
                      .|+|||++||||||+|||++||++|+|||+||+++|++++|||+|+||++||
T Consensus         2 ~CsF~g~~I~PG~G~~~Vr~Dg~v~~F~ssKc~~~~~~krnPrk~~WT~~yR   53 (53)
T d1vqou1           2 ECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTDTAR   53 (53)
T ss_dssp             BCTTTCCBCCTTCCEEEECTTSCEEEESCHHHHHHHHTTCCGGGCTTSTTTC
T ss_pred             cccccCCeecCCCCEEEEecCCCEEEEeCHHHHHHHHcCCCcccceeeeccC
Confidence            6999999999999999999999999999999999999999999999999986