Psyllid ID: psy4576

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400
Protein Sequence
MRRNACAQTNEAGVMNIDVIAYGSVCRDVKLHDLPCSVSDEVVLFSNGLFLFVFSFRSENKQIIGDLKVENTVYRIKSKDLLASFSSDVWDEERCRSCGLLSGSITQTYIHYLECKNRGKLYECSLCNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTFDSKAKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGALTEHHQREHQGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPPKLR
Secondary Structure (PSIPRED)
cccHHHHcccccccEEEEEEEEcccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccHHHHcccccccccccccccccccccccHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEEEEEEEEEcccccccccccccEccccccEEcccccEEEEcEEccccccccccccccccEccccHHHEHccccccccccccccccccEcccccHHHcccEccccccccccccccccEccccHHHHHHHccccccccccccccccEcccccccEccccHHHHHHHHHcccccccccccccccEccccHHHHHHHHccccccccEEcccccccEccccHHHHHHHHcccccccccccccccEccccHHHHHHHHcccccccccEEcccccccccccccccEccccHHHHHHHHHcccccccccccccEEccHHHHHHHHHHHHccccEEccccccEEccHHHHHHHHHHHHccccEEccccccEEccHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
mrrnacaqtneagvMNIDVIAYGsvcrdvklhdlpcsvsdevvlfSNGLFLFVFSFRSENKQIIGDLKVENTVYRIKSKDLLASfssdvwdeercrscgllsgsiTQTYIHYLecknrgklyecslcnesFENKKVLFRHLRgkhgmkiklsrhktkcvchycnrtfdSKAKIQEHIISSHmheklyqcdfcgsqqrtkcrfyyhlrdkhlskpanlscefcsRIFTKKELLRSHLAVHkigknyqcyycrktychkpnltnhiqnvhlKSELEKRTAILKREFICDvcgksyvrkgaltehhqrehqgkkpvcticgkmLIDKrslanhmnthtglkphcceicgrsYSTAAYLKVHMschtgetshtchlcpqkfrqrssytlhykthhpgvippklr
Flexible Loop (DISEMBL)
mrrnacaqtneagvmniDVIAYGSVCRDVKLHDLPCSVSDEVVLFSNGLFLFVFSFRSENkqiigdlkventvyrIKSKDLLAsfssdvwdeERCRSCGLLSGSITQTYIHYLECKNRGKLYECSLCNESFENKKVLFRHLRGkhgmkiklsrhktkcVCHYCNRTFDSKAKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKhlskpanlSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGALtehhqrehqgkkpvctiCGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYtlhykthhpgvippklr
Low Complexity Region (SEG)
MRRNACAQTNEAGVMNIDVIAYGSVCRDVKLHDLPCSVSDEVVLFSNGLFLFVFSFRSENKQIIGDLKVENTVYRIKSKDLLASFSSDVWDEERCRSCGLLSGSITQTYIHYLECKNRGKLYECSLCNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTFDSKAKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGALTEHHQREHQGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPPKLR
Disordered region (IsUnstruct)
**********EAGVMNIDVIAYGSVCRDVKLHDLPCSVSDEVVLFSNGLFLFVFSFRSENKQIIGDLKVENTVYRIKSKDLLASFSSDVWDEERCRSCGLLSGSITQTYIHYLECKNRGKLYECSLCNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTFDSKAKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGALTEHH*****GKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH**********
Disordered Region (DISOPRED)
***************NIDVIAYGSVCRDVKLHDLPCSVSDEVVLFSNGLFLFVFSFRSENKQIIGDLKVENTVYRIKSKDLLASFSSDVWDEERCRSCGLLSGSITQTYIHYLECKNRGKLYECSLCNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTFDSKAKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGALTEHHQREHQGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPPKLR
Disordered Region (DISEMBL)
********TNEAGVMNIDVIAYGSVCRDVKLHDLPCSVSDEVVLFSNGLFLFVFSFRSENKQIIGDLKVENTVYRIKSKDLLASFSSDVWDEERCRSCGLLSGSITQTYIHYLECKNRGKLYECSLCNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTFDSKAKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGALT***********PVCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPPKLR
Disordered Region (DISPRO)
**********EAGVMNIDVIAYGSVCRDVKLHDLPCSVSDEVVLFSNGLFLFVFSFRSENKQIIGDLKVENTVYRIKSKDLLASFSSDVWDEERCRSCGLLSGSITQTYIHYLECKNRGKLYECSLCNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTFDSKAKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGALTEHHQREHQGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPPKLR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRRNACAQTNEAGVMNIDVIAYGSVCRDVKLHDLPCSVSDEVVLFSNGLFLFVFSFRSENKQIIGDLKVENTVYRIKSKDLLASFSSDVWDEERCRSCGLLSGSITQTYIHYLECKNRGKLYECSLCNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTFDSKAKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGALTEHHQREHQGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPPKLR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	400	2.2.26 [Sep-21-2011]
Q6ZMW2	699	Zinc finger protein 782 O	yes	N/A	0.625	0.357	0.341	4e-31
P51523	738	Zinc finger protein 84 OS	no	N/A	0.642	0.348	0.333	7e-31
Q06732	778	Zinc finger protein 33B O	no	N/A	0.62	0.318	0.349	2e-30
Q5R4K8	730	Zinc finger protein 615 O	no	N/A	0.78	0.427	0.306	2e-30
Q9Y6Q3	630	Zinc finger protein 37 ho	no	N/A	0.62	0.393	0.330	4e-30
P17030	456	Zinc finger protein 25 OS	no	N/A	0.7	0.614	0.334	6e-30
Q96RE9	604	Zinc finger protein 300 O	no	N/A	0.62	0.410	0.341	1e-29
P10076	861	Zinc finger protein 26 OS	no	N/A	0.62	0.288	0.330	1e-29
A2VDP4	647	Zinc finger protein 567 O	no	N/A	0.645	0.398	0.348	2e-29
Q96EQ9	843	Histone-lysine N-methyltr	no	N/A	0.675	0.320	0.331	2e-29

>sp|Q6ZMW2|ZN782_HUMAN Zinc finger protein 782 OS=Homo sapiens GN=ZNF782 PE=2 SV=1

 Score =  135 bits (341), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 94/275 (34%), Positives = 131/275 (47%), Gaps = 25/275 (9%)

Query: 120 KLYECSLCNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTFDSKAKIQEHIIS 179
           K +EC  C +SF  K +L  H R   G K           C+ C ++F   + ++ H   
Sbjct: 448 KPFECHECGKSFNYKSILIVHQRTHTGEK--------PFECNECGKSFSHMSGLRNHR-R 498

Query: 180 SHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHLAVH 239
           +H  E+ Y+CD CG   + K     H R     KP    C  C + F +K  LR H  +H
Sbjct: 499 THTGERPYKCDECGKAFKLKSGLRKHHRTHTGEKP--YKCNQCGKAFGQKSQLRGHHRIH 556

Query: 240 KIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGAL 299
              K Y+C +C + +  K NL  H            RT   ++ + C+ CGK++ +K  L
Sbjct: 557 TGEKPYKCNHCGEAFSQKSNLRVH-----------HRTHTGEKPYQCEECGKTFRQKSNL 605

Query: 300 TEHHQREHQGKKPV-CTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVH 358
              HQR H G+KP  C  CGK   +K  L  H  THTG KP+ C  CG ++S  + L+VH
Sbjct: 606 -RGHQRTHTGEKPYECNECGKAFSEKSVLRKHQRTHTGEKPYNCNQCGEAFSQKSNLRVH 664

Query: 359 MSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPG 393
              HTGE  + C  C + F Q+SS   H K  HPG
Sbjct: 665 QRTHTGEKPYKCDKCGRTFSQKSSLREHQKA-HPG 698

May be involved in transcriptional regulation.
Homo sapiens (taxid: 9606)

>sp|P51523|ZNF84_HUMAN Zinc finger protein 84 OS=Homo sapiens GN=ZNF84 PE=1 SV=2

 Score =  135 bits (339), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 97/291 (33%), Positives = 132/291 (45%), Gaps = 34/291 (11%)

Query: 120 KLYECSLCNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTFDSKAKIQEHIIS 179
           K YEC  C ++F  K  L  H R   G K           C+ C R F  K+ +  H   
Sbjct: 289 KPYECGECGKAFSRKSHLISHWRTHTGEK--------PYGCNECGRAFSEKSNLINHQ-R 339

Query: 180 SHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHLAVH 239
            H  EK ++C  CG     K +   H R    +KP    C  C + F +K  L  H  +H
Sbjct: 340 IHTGEKPFECRECGKAFSRKSQLVTHHRTHTGTKP--FGCSDCRKAFFEKSELIRHQTIH 397

Query: 240 KIGKNYQCYYCRKTYCHKPNLTNH-------------------IQNVHLKSELEKRTAIL 280
              K Y+C  CRK +  + +L NH                    Q  HL S   + T   
Sbjct: 398 TGEKPYECSECRKAFRERSSLINHQRTHTGEKPHGCIQCGKAFSQKSHLISH--QMTHTG 455

Query: 281 KREFICDVCGKSYVRKGALTEHHQREHQGKKPV-CTICGKMLIDKRSLANHMNTHTGLKP 339
           ++ FIC  CGK++ RK  L  H QR H G+KP  C+ CGK   +K SL NH   HTG KP
Sbjct: 456 EKPFICSKCGKAFSRKSQLVRH-QRTHTGEKPYECSECGKAFSEKLSLTNHQRIHTGEKP 514

Query: 340 HCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
           + C  CG+++   ++L  H   HTGE  + C  C + F ++SS   H +TH
Sbjct: 515 YVCSECGKAFCQKSHLISHQRTHTGEKPYECSECGKAFGEKSSLATHQRTH 565

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q06732|ZN33B_HUMAN Zinc finger protein 33B OS=Homo sapiens GN=ZNF33B PE=2 SV=2

 Score =  134 bits (336), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/272 (34%), Positives = 130/272 (47%), Gaps = 24/272 (8%)

Query: 120 KLYECSLCNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTFDSKAKIQEHIIS 179
           K +EC+ C ++F  K  L RH R   G K           C+ C +TF  K+ + +H   
Sbjct: 327 KHFECNECGKAFWEKSHLTRHQRVHTGEK--------HFQCNQCGKTFWEKSNLTKHQ-R 377

Query: 180 SHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHLAVH 239
           SH  EK ++C+ CG     K     H R     KP    C  C + F +K  L  H   H
Sbjct: 378 SHTGEKPFECNECGKAFSHKSALTLHQRTHTGEKP--YQCNACGKTFYQKSDLTKHQRTH 435

Query: 240 KIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGAL 299
              K Y+CY C K++C   +LT H           +RT   ++ F C  CGKS+ +K  L
Sbjct: 436 TGQKPYECYECGKSFCMNSHLTVH-----------QRTHTGEKPFECLECGKSFCQKSHL 484

Query: 300 TEHHQREHQGKKPV-CTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVH 358
           T+H QR H G KP  C  CGK    K  L  H   HTGLKP+ C  CG+++   + L +H
Sbjct: 485 TQH-QRTHIGDKPYECNACGKTFYHKSVLTRHQIIHTGLKPYECYECGKTFCLKSDLTIH 543

Query: 359 MSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
              HTGE    C  C + F  +S+ + HY+TH
Sbjct: 544 QRTHTGEKPFACPECGKFFSHKSTLSQHYRTH 575

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q5R4K8|ZN615_PONAB Zinc finger protein 615 OS=Pongo abelii GN=ZNF615 PE=2 SV=2

 Score =  134 bits (336), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 103/336 (30%), Positives = 151/336 (44%), Gaps = 24/336 (7%)

Query: 56  FRSENKQIIGDLKVENTVYRI-KSKDLLASFSSDVWDEERCRSCGLLSGSITQTYIHYLE 114
           F + +KQ   ++K   T   I KS+ +    + ++ +   C  CG     ++Q +I +  
Sbjct: 165 FHANHKQFYTEMKFPATAKPINKSQFIKQQRTHNIENAHVCSECGKAFLKLSQ-FIDHQR 223

Query: 115 CKNRGKLYECSLCNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTFDSKAKIQ 174
             N  K + CS+C ++F  K  L  H R       +L  ++    C  C++TF  K+++ 
Sbjct: 224 VHNGEKPHVCSMCGKAFSRKSRLMDHQR----THTELKHYE----CTECDKTFLKKSQLN 275

Query: 175 EHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRS 234
            H   +HM EK Y C  CG     KCR  YH R     KP    C  C + F+ K  L +
Sbjct: 276 IHQ-KTHMGEKPYTCSECGKAFIKKCRLIYHQRTHTGEKPHG--CSVCGKAFSTKFSLTT 332

Query: 235 HLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYV 294
           H   H   K Y C  C K +  K  L  H            RT   ++ FIC+ CGK + 
Sbjct: 333 HQKTHTGEKPYICSECGKGFIEKRRLIAH-----------HRTHTGEKPFICNKCGKGFT 381

Query: 295 RKGALTEHHQREHQGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAY 354
            K +L  H Q   + K   C+ CGK    K  L  H  THTG KP+ C  CG+ ++  + 
Sbjct: 382 LKNSLITHQQTHTEEKLYTCSECGKGFSMKHCLMVHQRTHTGEKPYKCNECGKGFALKSP 441

Query: 355 LKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
           L  H   HTGE  + C  C + F  +S   +H +TH
Sbjct: 442 LIRHQRTHTGEKPYVCTECRKGFTMKSDLIVHQRTH 477

May be involved in transcriptional regulation.

Pongo abelii (taxid: 9601)

>sp|Q9Y6Q3|ZFP37_HUMAN Zinc finger protein 37 homolog OS=Homo sapiens GN=ZFP37 PE=2 SV=3

 Score =  132 bits (333), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 90/272 (33%), Positives = 130/272 (47%), Gaps = 24/272 (8%)

Query: 120 KLYECSLCNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTFDSKAKIQEHIIS 179
           K YEC+ C ++F +   L +H+R   G K           C  C ++F   + + EH+  
Sbjct: 375 KPYECAECGKTFRHSSNLIQHVRSHTGEKP--------YECKECGKSFRYNSSLTEHV-R 425

Query: 180 SHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHLAVH 239
           +H  E  Y+C+ CG   +       H+R     KP    C  C + F+KK  L  H   H
Sbjct: 426 THTGEIPYECNECGKAFKYSSSLTKHMRIHTGEKP--FECNECGKAFSKKSHLIIHQRTH 483

Query: 240 KIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGAL 299
              K Y+C  C K + H  +LT H+           RT   +  F C+ CGK + +   L
Sbjct: 484 TKEKPYKCNECGKAFGHSSSLTYHM-----------RTHTGESPFECNQCGKGFKQIEGL 532

Query: 300 TEHHQREHQGKKPV-CTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVH 358
           T+H QR H G+KP  C  CGK    K  L  H  THTG KP+ C  C ++++  + L +H
Sbjct: 533 TQH-QRVHTGEKPYECNECGKAFSQKSHLIVHQRTHTGEKPYECNECEKAFNAKSQLVIH 591

Query: 359 MSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
              HTGE  + C+ C + F+Q +S T H KTH
Sbjct: 592 QRSHTGEKPYECNECGKTFKQNASLTKHVKTH 623

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|P17030|ZNF25_HUMAN Zinc finger protein 25 OS=Homo sapiens GN=ZNF25 PE=2 SV=2

 Score =  132 bits (331), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 106/317 (33%), Positives = 144/317 (45%), Gaps = 37/317 (11%)

Query: 95  CRSCGLLSGSITQTYIHYLECKNRGKLYECSLCNESFENKKVLFRHLRGKHG-------- 146
           C  CG  S S  +  I + +   R K YEC  C + F +   L RHLR   G        
Sbjct: 148 CDKCGK-SFSKNEDLIRHQKIHTRDKTYECKECKKIFYHLSSLSRHLRTHAGEKPYECNQ 206

Query: 147 ------MKIKLSRHKTKCV------CHYCNRTFDSKAKIQEHIISSHMHEKLYQCDFCGS 194
                  K  L+ H+          C  C + F  KA +  H   +H  EK Y+C  CG 
Sbjct: 207 CEKSFYQKPHLTEHQKTHTGEKPFECTECGKFFYVKAYLMVHQ-KTHTGEKPYECKECGK 265

Query: 195 QQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTY 254
               K     H R     KP    C+ C + F++   L++H   H   K Y+C  CRK +
Sbjct: 266 AFSQKSHLTVHQRMHTGEKP--YKCKECGKFFSRNSHLKTHQRSHTGEKPYECKECRKCF 323

Query: 255 CHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGALTEHHQREHQGKKPV- 313
             K  LT H           +RT   ++ F C+ CGK++  K  LT+H QR+H G+KP  
Sbjct: 324 YQKSALTVH-----------QRTHTGEKPFECNKCGKTFYYKSDLTKH-QRKHTGEKPYE 371

Query: 314 CTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC 373
           CT CGK       L  H  THTG KP+ C+ CG+S+S  ++  +H   HTGE  + C  C
Sbjct: 372 CTECGKSFAVNSVLRLHQRTHTGEKPYACKECGKSFSQKSHFIIHQRKHTGEKPYECQEC 431

Query: 374 PQKFRQRSSYTLHYKTH 390
            + F Q+S  T H KTH
Sbjct: 432 GETFIQKSQLTAHQKTH 448

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q96RE9|ZN300_HUMAN Zinc finger protein 300 OS=Homo sapiens GN=ZNF300 PE=2 SV=1

 Score =  131 bits (329), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/272 (34%), Positives = 127/272 (46%), Gaps = 24/272 (8%)

Query: 120 KLYECSLCNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTFDSKAKIQEHIIS 179
           K YECS C ++F  K  L  H R   G K           C  C + F  K+++  H   
Sbjct: 351 KPYECSECGKAFSQKSPLIIHQRIHTGEK--------PYECRECGKAFSQKSQLIIHH-R 401

Query: 180 SHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHLAVH 239
           +H  EK Y+C  CG     K     H R     KP    C  C   F++K  L +H  VH
Sbjct: 402 AHTGEKPYECTECGKAFCEKSHLIIHKRIHTGEKP--YKCAQCEEAFSRKTELITHQLVH 459

Query: 240 KIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGAL 299
              K Y+C  C KT+  K  L  H           +RT   ++ + C  CGK++ +K  L
Sbjct: 460 TGEKPYECTECGKTFSRKSQLIIH-----------QRTHTGEKPYKCSECGKAFCQKSHL 508

Query: 300 TEHHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVH 358
             H QR H G+KP +CT CGK    K  L  H   HTG KP+ C  CG+++S  + L +H
Sbjct: 509 IGH-QRIHTGEKPYICTECGKAFSQKSHLPGHQRIHTGEKPYICAECGKAFSQKSDLVLH 567

Query: 359 MSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
              HTGE  + C +C + F Q+S  T+H + H
Sbjct: 568 QRIHTGERPYQCAICGKAFIQKSQLTVHQRIH 599

Has a transcriptional repressor activity.

Homo sapiens (taxid: 9606)

>sp|P10076|ZFP26_MOUSE Zinc finger protein 26 OS=Mus musculus GN=Zfp26 PE=2 SV=2

 Score =  131 bits (329), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/272 (33%), Positives = 124/272 (45%), Gaps = 24/272 (8%)

Query: 120 KLYECSLCNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTFDSKAKIQEHIIS 179
           K YEC  C ++F  +  L +H+R   G +           C  C + F S A++  HI  
Sbjct: 580 KPYECKECGKTFPERSCLTKHIRTHTGERPY--------ECKECGKGFISFAQLTVHI-K 630

Query: 180 SHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHLAVH 239
           +H  E+ +QC  C    R       H R     KP    C +C + FT +  L  HL  H
Sbjct: 631 THSSERPFQCKVCTKSFRNSSSLETHFRIHTGVKP--YKCSYCGKAFTARSGLTIHLRNH 688

Query: 240 KIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGAL 299
              K+Y C  C K +     L  HI           R+   ++ F CD CGK++     L
Sbjct: 689 TGEKSYACQECGKAFSTSSGLIAHI-----------RSHKGEKPFECDHCGKAFASSSYL 737

Query: 300 TEHHQREHQGKKPV-CTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVH 358
             H  + H G+KP  CT+CGK       L  HM THTG KP  C ICG+S+  ++YL+VH
Sbjct: 738 NVH-LKIHTGEKPFQCTVCGKTFTCSSYLPVHMRTHTGEKPFQCIICGKSFLWSSYLRVH 796

Query: 359 MSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
           M  HTGE  + C  C + F + S    H + H
Sbjct: 797 MRIHTGEKPYVCQYCGKAFTEHSGLNKHLRKH 828

May be involved in transcriptional regulation.

Mus musculus (taxid: 10090)

>sp|A2VDP4|ZN567_BOVIN Zinc finger protein 567 OS=Bos taurus GN=ZNF567 PE=2 SV=1

 Score =  130 bits (327), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 101/290 (34%), Positives = 135/290 (46%), Gaps = 32/290 (11%)

Query: 120 KLYECSLCNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTFDSKAKIQEHIIS 179
           K Y+C  C  SF  K  L  H R   G K          VC+ C ++F  K  + +H   
Sbjct: 279 KPYQCHQCGNSFRRKSYLIDHQRTHTGEK--------PFVCNECGKSFRLKTALTDHQ-R 329

Query: 180 SHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHLAVH 239
           +H  EK Y+C  C +  R K     H R     KP    C  C + F +K  L  H  +H
Sbjct: 330 THTGEKSYECPQCRNAFRLKSHLIRHQRTHTGEKP--YECSDCGKSFRQKTTLSLHQRIH 387

Query: 240 KIGKNYQCYYCRKTYCHKPNLTNHIQNVHL-----------KSELEKRTAIL-------K 281
              K Y C  C K++  K NLT H Q  H            KS  +K T  L       +
Sbjct: 388 TGEKPYICKECGKSFHQKANLTVH-QRTHTGEKPYICNECGKSFSQKTTLALHEKTHNEE 446

Query: 282 REFICDVCGKSYVRKGALTEHHQREHQGKKPV-CTICGKMLIDKRSLANHMNTHTGLKPH 340
           + +IC+ CGKS+ +K  L   HQR H G+K   C  CGK    K  L +H  THTG KP+
Sbjct: 447 KPYICNECGKSFPQKTTLVA-HQRTHTGEKSYECPHCGKAFRMKSYLIDHHRTHTGEKPY 505

Query: 341 CCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
            C  CG+S+S    L +H   HTGE  + C+ C + FRQ+++ T+H K H
Sbjct: 506 ECNECGKSFSQKTNLNLHQRIHTGEKPYICNECGKSFRQKATLTVHQKIH 555

May be involved in transcriptional regulation.

Bos taurus (taxid: 9913)

>sp|Q96EQ9|PRDM9_MOUSE Histone-lysine N-methyltransferase PRDM9 OS=Mus musculus GN=Prdm9 PE=1 SV=2

 Score =  130 bits (327), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/299 (33%), Positives = 125/299 (41%), Gaps = 29/299 (9%)

Query: 95  CRSCGLLSGSITQ--TYIHYLECKNRGKLYECSLCNESFENKKVLFRHLRGKHGMKIKLS 152
           CR CG      TQ    I +       K Y C  C   F  K  L +H R   G K    
Sbjct: 567 CRECGR---GFTQKSDLIKHQRTHTGEKPYVCRECGRGFTQKSDLIKHQRTHTGEK---- 619

Query: 153 RHKTKCVCHYCNRTFDSKAKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLS 212
                 VC  C R F  K+ + +H   +H  EK Y C  CG     K     H R     
Sbjct: 620 ----PYVCRECGRGFTQKSVLIKHQ-RTHTGEKPYVCRECGRGFTQKSVLIKHQRTHTGE 674

Query: 213 KPANLSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSE 272
           KP    C  C R FT K +L  H   H   K Y C  C + +  K NL  H         
Sbjct: 675 KP--YVCRECGRGFTAKSVLIQHQRTHTGEKPYVCRECGRGFTAKSNLIQH--------- 723

Query: 273 LEKRTAILKREFICDVCGKSYVRKGALTEHHQREHQGKKP-VCTICGKMLIDKRSLANHM 331
             +RT   ++ ++C  CG+ +  K  L +H QR H G+KP VC  CG+    K  L  H 
Sbjct: 724 --QRTHTGEKPYVCRECGRGFTAKSVLIQH-QRTHTGEKPYVCRECGRGFTAKSVLIQHQ 780

Query: 332 NTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
            THTG KP+ C  CGR ++  + L  H   HTGE  + C  C   F Q+S    H +TH
Sbjct: 781 RTHTGEKPYVCRECGRGFTQKSNLIKHQRTHTGEKPYVCRECGWGFTQKSDLIQHQRTH 839

Histone methyltransferase that specifically trimethylates 'Lys-4' of histone H3 during meiotic prophase and is essential for proper meiotic progression. Does not have the ability to mono- and dimethylate 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. Plays a central role in the transcriptional activation of genes during early meiotic prophase.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	400
334327353	1783	PREDICTED: hypothetical protein LOC10001	0.68	0.152	0.309	4e-32
334324890	1109	PREDICTED: zinc finger protein 135-like	0.732	0.264	0.316	4e-32
193591726	536	PREDICTED: zinc finger protein 271-like	0.645	0.481	0.351	5e-32
405950372	592	Histone-lysine N-methyltransferase PRDM9	0.79	0.533	0.278	1e-31
432958426	264	PREDICTED: zinc finger protein 182-like,	0.62	0.939	0.338	2e-31
326673953	765	PREDICTED: zinc finger protein 850-like	0.697	0.364	0.331	3e-31
444725063	590	Zinc finger protein 717 [Tupaia chinensi	0.627	0.425	0.345	4e-31
296197083	1962	PREDICTED: uncharacterized protein LOC10	0.68	0.138	0.306	5e-31
326673951	810	PREDICTED: zinc finger protein 850-like	0.702	0.346	0.322	5e-31
338719509	909	PREDICTED: zinc finger protein 782-like	0.62	0.272	0.345	6e-31

>gi|334327353|ref|XP_001371662.2| PREDICTED: hypothetical protein LOC100018428 [Monodelphis domestica]

 Score =  145 bits (366), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 92/297 (30%), Positives = 136/297 (45%), Gaps = 25/297 (8%)

Query: 95   CRSCGLLSGSITQTYIHYLECKNRGKLYECSLCNESFENKKVLFRHLRGKHGMKIKLSRH 154
            CR CG    S +Q  +H+       K Y+C  C ++F  +  L  HLR   G K     H
Sbjct: 1478 CRQCGKTFTSNSQLAVHH-RIHTGEKPYDCKQCGKAFIRRDQLAVHLRIHTGEK----PH 1532

Query: 155  KTKCVCHYCNRTFDSKAKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKP 214
            +    C  C +TF+ K+ + EH   +H  EK Y+C  CG           H R     KP
Sbjct: 1533 E----CKQCEKTFNRKSSLAEHQ-KTHTGEKPYECKQCGKTFSHSSSLAAHQRIHTGEKP 1587

Query: 215  ANLSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELE 274
             +  C+ C + F+++    +H  +H   K Y C  C KT+     L+ H Q +H      
Sbjct: 1588 YD--CKQCGKTFSQRSHFAAHQRIHTGEKPYDCKQCGKTFSQSSTLSVH-QRIHTG---- 1640

Query: 275  KRTAILKREFICDVCGKSYVRKGALTEHHQREHQGKKPV-CTICGKMLIDKRSLANHMNT 333
                  ++ + C  CGK++     L  H QR H G+KP  C  C     +  SLA H   
Sbjct: 1641 ------EKPYKCKQCGKTFTNNSNLAVH-QRTHTGEKPYECKYCEMTFSESSSLAVHQRI 1693

Query: 334  HTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
            HTG KP+ C+ CG+++S ++ L  H   HTGE  + C  C + F Q S+  +H + H
Sbjct: 1694 HTGEKPYDCKQCGKTFSQSSSLAAHQRIHTGEKPYECKQCGKAFSQGSALAVHQRIH 1750

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|334324890|ref|XP_001374319.2| PREDICTED: zinc finger protein 135-like [Monodelphis domestica]

 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 104/329 (31%), Positives = 152/329 (46%), Gaps = 36/329 (10%)

Query: 75  RIKSKDLLA--SFSSDVWDEERCRSCGLLSGSITQ---------TYIHYLECKNRGKLYE 123
           R++ K++ A  S S D    +RC   G    +  +         + + +       K YE
Sbjct: 395 RLEMKEMTAELSLSGDETQRQRCIGDGACDSTWRENLDAFRSRMSMVKHQRVHTGEKPYE 454

Query: 124 CSLCNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTFDSKAKIQEHIISSHMH 183
           C  C ++F +++ +  H R   G K           C  C + F S+  I EH  S H  
Sbjct: 455 CGQCGKAFRSRRSIIEHQRVHTGEK--------PYECGQCGKAFRSRRSIIEHQ-SIHTG 505

Query: 184 EKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHLAVHKIGK 243
           EK Y+CD CG     K   + H R     KP    C  C + FT K +L  H  +H   K
Sbjct: 506 EKPYECDQCGKAFTQKSGLFIHQRIHTGEKP--YGCNQCGKAFTHKSVLTKHQRIHTGEK 563

Query: 244 NYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGALTEHH 303
            ++C  C K +  +  LT H Q +H            ++ F C++CGK++++KG LT  H
Sbjct: 564 PFECNLCGKAFIQRGELTVH-QRIHTG----------EKPFECNLCGKAFIQKGKLTV-H 611

Query: 304 QREHQGKKPV-CTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCH 362
           QR H G+KP  C  CGK  I + SL  H   HTG KP  C  CG+++   A L  H   H
Sbjct: 612 QRIHTGEKPYECNQCGKAFIQRASLTVHQKIHTGEKPFKCNQCGKAFIQKATLTAHQRIH 671

Query: 363 TGETSHTCHLCPQKFRQRSSY-TLHYKTH 390
           TGE    C+ C + F Q+++Y T+H + H
Sbjct: 672 TGEKPFKCNQCGKAFIQKATYLTVHQRIH 700

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|193591726|ref|XP_001944018.1| PREDICTED: zinc finger protein 271-like [Acyrthosiphon pisum]

 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 99/282 (35%), Positives = 133/282 (47%), Gaps = 24/282 (8%)

Query: 110 IHYLECKNRGKLYECSLCNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTFDS 169
           I +L+   R K Y C +C++SF     L  H R     K  L        C  C+R+F +
Sbjct: 9   IKHLQTHARQKPYTCDVCDKSFSQSGSLLVHQRTHAEEKPYL--------CDICDRSFSN 60

Query: 170 KAKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKK 229
           K ++  H   +H  EK YQCD C            H R     KP    C+ C + F+  
Sbjct: 61  KGELMAHY-RTHPGEKPYQCDVCDKSFSVSSSLTKHRRTHTGEKP--YQCDVCDKSFSNN 117

Query: 230 ELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVC 289
             L+ H   H   K YQC  C K++  K +LT H           +RT   ++ + CDVC
Sbjct: 118 GDLKRHQRTHTGEKPYQCDVCDKSFSVKSSLTIH-----------RRTHTGEKPYQCDVC 166

Query: 290 GKSYVRKGALTEHHQREHQGKKPV-CTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRS 348
            KS+   GAL  H +R H G+KP  C +C K      SL  H  THTG KP+ C++C +S
Sbjct: 167 DKSFSNNGALIIH-RRTHTGEKPYQCDVCDKSFSVSSSLTIHRRTHTGEKPYQCDVCDKS 225

Query: 349 YSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
           +S    LK H   HTGE SH C +C + F   SS T H +TH
Sbjct: 226 FSNNGDLKRHQRTHTGEKSHQCDVCDKSFSVSSSLTKHRRTH 267

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405950372|gb|EKC18365.1| Histone-lysine N-methyltransferase PRDM9 [Crassostrea gigas]

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 97/348 (27%), Positives = 160/348 (45%), Gaps = 32/348 (9%)

Query: 52  FVFSFRSENKQIIGDLKVENTVYRIKSKDLLASFSSDVW-DEERCRSCGLLSGSITQTYI 110
           +V   RSE++Q +   +    +Y    KD+L      VW   +  +  G+  G +     
Sbjct: 210 YVNCARSESEQNLVAFQHRGQIYYRSFKDILPGTELLVWYGHDYGKELGIFRGEVEII-- 267

Query: 111 HYLECKNRGKLYECSLCNESFENKKVLFRHLRGKHG-------MKIKLSRHKTKCVCHYC 163
              +  N  +++ C  C   F + + L +H + KHG         +K+SR K        
Sbjct: 268 --PKVLNGEEVFCCPFCRMGFSSYEWLSKHCKFKHGEILSKHVPDVKISRQK---AVESE 322

Query: 164 NRTFDSKAKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSCEFCS 223
           +++ +   K  E  ++  + EK Y+CD CG           H+R     KP    C  C 
Sbjct: 323 DKSSEMTEKAME--MNQKIGEKPYKCDLCGKSFNLSQHLQKHMRTHTGEKP--YKCNVCG 378

Query: 224 RIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKRE 283
           + F + + L++H+ +H   K Y+C  C K +    NL  H+           RT   ++ 
Sbjct: 379 KAFNQSQNLQTHMRIHTGEKPYKCNVCGKAFNQSQNLQAHM-----------RTHTGEKP 427

Query: 284 FICDVCGKSYVRKGALTEHHQREHQGKKPV-CTICGKMLIDKRSLANHMNTHTGLKPHCC 342
           + CDVCGK++   G+L + H R H G+KP  C +CGK       L  HM  HTG KP+ C
Sbjct: 428 YKCDVCGKAFTESGSL-QKHMRTHTGEKPYKCDVCGKAFNQSADLQKHMRIHTGEKPYKC 486

Query: 343 EICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
           ++CG++++   +L+ HM  HTGE  + C +C + F Q +    H + H
Sbjct: 487 DMCGKAFNQIPHLQTHMRTHTGEKPYKCDVCGKAFNQSADLQKHMRIH 534

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|432958426|ref|XP_004086026.1| PREDICTED: zinc finger protein 182-like, partial [Oryzias latipes]

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/272 (33%), Positives = 134/272 (49%), Gaps = 24/272 (8%)

Query: 120 KLYECSLCNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTFDSKAKIQEHIIS 179
           + + C +C +SF     L  H+R     K+          C  C +TF     +  H+  
Sbjct: 3   RPFTCEVCGKSFTTGSDLKVHIRIHTAKKLF--------PCDICEKTFIHVNSLTSHM-R 53

Query: 180 SHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHLAVH 239
           +H  +KL+ CD C     +     YH+R     +P   SC+ C + FT+   L  H+  H
Sbjct: 54  THTAKKLFSCDICKKVFVSSRNLTYHMRTHTDERP--YSCKVCKKCFTQHSCLNVHMRTH 111

Query: 240 KIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGAL 299
              + Y C  CRKT+ H  NLT H+           RT   +R F C++C K ++   AL
Sbjct: 112 TGERPYSCDICRKTFIHSNNLTLHM-----------RTHTGERPFTCELCQKGFMHSRAL 160

Query: 300 TEHHQREHQGKKPV-CTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVH 358
             H  R H G+KP  C +C K    K SL  HM  HTG +P  CE+CG+S++T + LK+H
Sbjct: 161 NVH-MRNHTGEKPYSCKVCEKHFTQKSSLNVHMRIHTGERPFTCEVCGKSFTTGSDLKIH 219

Query: 359 MSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
           M  HTGE  +TC +C + F Q+SS  +H + H
Sbjct: 220 MRNHTGERPYTCKVCKKHFTQKSSLNVHMRIH 251

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326673953|ref|XP_001921672.3| PREDICTED: zinc finger protein 850-like [Danio rerio]

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 101/305 (33%), Positives = 144/305 (47%), Gaps = 26/305 (8%)

Query: 89  VWDEERCRSCGLLSGSITQTYIH--YLECKNRGKLYECSLCNESFENKKVLFRHLRGKHG 146
           V   E+  +C L   S T    H  ++      K Y C  C +SF  K+ L +H++   G
Sbjct: 386 VHSGEKPYTCQLCGKSFTWKRYHTEHMRIHTGEKPYTCQQCGKSFICKQNLVKHMKVHSG 445

Query: 147 MKIKLSRHKTKCVCHYCNRTFDSKAKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFYYHL 206
            K           C  C ++F  K  +Q H+ + H    LY C  CG     + R   H 
Sbjct: 446 EKPH--------TCDQCGKSFTCKQNLQNHM-TFHTGGNLYTCQHCGKSFTREQRLTEHT 496

Query: 207 RDKHLSKPANLSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQN 266
           R     KP   +C+ C + FT ++ L++H+ +H   K Y C  C K++  K NLT H+  
Sbjct: 497 RIHTGEKP--YTCQQCGKSFTGEQNLKNHMKIHTGEKMYTCKQCGKSFTWKQNLTEHM-- 552

Query: 267 VHLKSELEKRTAILKREFICDVCGKSYVRKGALTEHHQREHQGKKP-VCTICGKMLIDKR 325
                    +    ++ + C  CGKS+  K  L EH  R H G+KP  C  CGK    K+
Sbjct: 553 ---------KIHTGEKPYTCQECGKSFFWKQTLIEH-TRIHTGEKPNTCCQCGKSFTWKQ 602

Query: 326 SLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTL 385
           +L +HM  HTG KPH C+ CG+S+     LK HM  HTGE  HTCH C + F  + + T 
Sbjct: 603 NLIDHMRIHTGEKPHSCQQCGKSFVCTQSLKRHMRVHTGEKPHTCHQCGKSFSWKKNLTE 662

Query: 386 HYKTH 390
           H + H
Sbjct: 663 HMRIH 667

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|444725063|gb|ELW65643.1| Zinc finger protein 717 [Tupaia chinensis]

 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 95/275 (34%), Positives = 133/275 (48%), Gaps = 24/275 (8%)

Query: 117 NRGKLYECSLCNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTFDSKAKIQEH 176
            + K YEC  C ++F  K  L  HLR   G K           C  C +TF  K+ + +H
Sbjct: 137 TKEKPYECEWCGKTFSWKSALTVHLRTHTGEKPY--------ECQQCRKTFSRKSALTKH 188

Query: 177 IISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHL 236
              +H  EK Y+C+ C  +   K     H       KP    CE C + F++K  L  H 
Sbjct: 189 W-RTHTGEKPYECEQCKKKFYQKSHLTIHQLTHKGEKP--YECEQCRKTFSQKAYLTVHQ 245

Query: 237 AVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRK 296
             H+  K Y+C  CRKT+C K  LT H           +RT   ++ + C  C K++ RK
Sbjct: 246 RTHQAEKPYECPLCRKTFCWKSALTVH-----------RRTHTGEKPYECQQCRKTFHRK 294

Query: 297 GALTEHHQREHQGKKPV-CTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYL 355
            ALT H  R H G+KP  C  C K    K  L  H  TH G KP+ CE CG+++S  +  
Sbjct: 295 SALTGH-WRTHTGEKPYECEQCKKKFYRKAQLTVHQITHKGEKPYECEWCGKTFSWKSAF 353

Query: 356 KVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
            VH+  HTGE  + C  C + F Q+++ T+H++TH
Sbjct: 354 TVHLRIHTGEKPYECQQCRKTFHQKAALTVHWRTH 388

Source: Tupaia chinensis

Species: Tupaia chinensis

Genus: Tupaia

Family: Tupaiidae

Order: Scandentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|296197083|ref|XP_002746124.1| PREDICTED: uncharacterized protein LOC100395428 [Callithrix jacchus]

 Score =  141 bits (356), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 91/297 (30%), Positives = 133/297 (44%), Gaps = 25/297 (8%)

Query: 95   CRSCGLLSGSITQTYIHYLECKNRGKLYECSLCNESFENKKVLFRHLRGKHGMKIKLSRH 154
            CR CG    +  +  +H L      K YEC+ C ++F+ K  L  H R   G K      
Sbjct: 1630 CRDCGKAFKTRNRLCMHQL-IHTGEKPYECNCCGKAFQFKYSLTIHSRIHTGEK------ 1682

Query: 155  KTKCVCHYCNRTFDSKAKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKP 214
                 C  C + F   + + +H+   H  E+ Y+C  CG           H R    ++ 
Sbjct: 1683 --PYECDKCGKAFSGSSDLTKHV-RIHTGERPYECSKCGRAFSRSSDLSKHKRTH--TRK 1737

Query: 215  ANLSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELE 274
             +  C  C + F+ K  L  H  VH   K Y+C  C K + H           + K    
Sbjct: 1738 KHYGCPQCGKDFSIKAELTKHRRVHAEEKRYRCEECGKAFRH-----------NCKRRAH 1786

Query: 275  KRTAILKREFICDVCGKSYVRKGALTEHHQREHQGKKPV-CTICGKMLIDKRSLANHMNT 333
            +R    ++ ++C  CGK++  +  LT H QR H G+KP  C +CGK    K +L NH   
Sbjct: 1787 ERAHTGEKPYLCGDCGKTFQDRHCLTIH-QRIHTGEKPYKCVVCGKAFSGKSNLTNHQRI 1845

Query: 334  HTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
            HTG KPH CE+CG ++  ++ L+ H   HTGE  + C  C   FRQ S+   H + H
Sbjct: 1846 HTGEKPHKCEVCGVAFHHSSVLRQHKRIHTGEKPYACSECGTSFRQGSALIGHKRVH 1902

Source: Callithrix jacchus

Species: Callithrix jacchus

Genus: Callithrix

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326673951|ref|XP_003200036.1| PREDICTED: zinc finger protein 850-like [Danio rerio]

 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 102/316 (32%), Positives = 147/316 (46%), Gaps = 35/316 (11%)

Query: 95  CRSCGLLSGSITQ--TYIHYLECKNRGKLYECSLCNESFENKKVLFRHLRGKHGMKIKLS 152
           C+ CG    S TQ    I ++   N+ K + C+ C + F  K  L  H+R   G K    
Sbjct: 169 CQQCGQ---SFTQRGNLIAHMRGHNKVKPFSCAECGQGFTQKGNLKAHMRAHSGEK---- 221

Query: 153 RHKTKCVCHYCNRTFDSKAKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLS 212
                  C  C ++F  K  +  H+   H  EK Y C  CG     K     H+R     
Sbjct: 222 ----PFDCSLCGQSFARKEILNAHL-RVHTGEKPYICTKCGQSFTQKGNLNSHMRRHSGE 276

Query: 213 KPANLSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHI-----QNV 267
           KP   +C  C + FT+KE+L SH+ +H   K Y C  C +++  K N   H+     +  
Sbjct: 277 KPH--TCSQCGQSFTRKEVLTSHMRIHTGEKPYTCTECGRSFAQKGNYNTHMRGHRGEKP 334

Query: 268 HLKSELEK---RTAIL---------KREFICDVCGKSYVRKGALTEHHQREHQGKKP-VC 314
           H  ++  +   R  +L         ++ F C  CG+S+ ++G L E H R H  +KP VC
Sbjct: 335 HTCTQCGRGFTRNEVLIAHMRVHTGEKPFTCQQCGQSFTQRGNL-EGHMRSHGAEKPFVC 393

Query: 315 TICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCP 374
           T CG+    K +L  HM  H G KP  C  CG++++    L  HM  HTGE  +TC  C 
Sbjct: 394 TQCGQSFTQKGNLNAHMRAHNGDKPFTCSECGQNFTRKEILASHMRIHTGEKPYTCAHCG 453

Query: 375 QKFRQRSSYTLHYKTH 390
           Q+FRQR + T H + H
Sbjct: 454 QRFRQRGNLTAHLRIH 469

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|338719509|ref|XP_001493807.3| PREDICTED: zinc finger protein 782-like [Equus caballus]

 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 94/272 (34%), Positives = 130/272 (47%), Gaps = 24/272 (8%)

Query: 120 KLYECSLCNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTFDSKAKIQEHIIS 179
           K +EC+ C +SF  K +L  H R   G K           C+ C ++F   + ++ H   
Sbjct: 658 KPFECNECGKSFNYKSILIVHQRTHTGEK--------PFECNECGKSFSHMSGLRNHW-R 708

Query: 180 SHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHLAVH 239
           +H  E+ Y+CD CG   + K     H R     KP    C  C + F +K  LR H  +H
Sbjct: 709 THTGERPYKCDECGKAFKLKSGLRKHHRTHTGEKP--YKCNQCGKAFGQKSQLRGHHRIH 766

Query: 240 KIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGAL 299
              K Y+C +C + +  K NL  H            RT   ++ + CD CGK++ +K  L
Sbjct: 767 TGEKPYKCSHCGEAFSQKSNLRVH-----------HRTHTGEKPYKCDECGKTFRQKSNL 815

Query: 300 TEHHQREHQGKKPV-CTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVH 358
              HQR H G+KP  C  CGK   +K  L  H  THTG KP+ C  CG ++S  + L+VH
Sbjct: 816 -RGHQRTHTGEKPYECNECGKAFSEKSVLRKHQRTHTGEKPYNCNHCGEAFSQKSNLRVH 874

Query: 359 MSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
              HTGE  H C  C + F Q+SS   H K H
Sbjct: 875 QRTHTGEKPHKCDKCGKTFSQKSSLREHQKAH 906

Source: Equus caballus

Species: Equus caballus

Genus: Equus

Family: Equidae

Order: Perissodactyla

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	400
UNIPROTKB|B1AKS7	420	ZNF25 "Zinc finger protein 25"	0.7	0.666	0.340	2.1e-38
UNIPROTKB|P17030	456	ZNF25 "Zinc finger protein 25"	0.7	0.614	0.340	2.1e-38
UNIPROTKB|F1MKQ4	741	F1MKQ4 "Uncharacterized protei	0.702	0.379	0.328	2.5e-38
ZFIN|ZDB-GENE-080220-13	381	zgc:171901 "zgc:171901" [Danio	0.582	0.611	0.350	7e-38
UNIPROTKB|I3LFP7	434	I3LFP7 "Uncharacterized protei	0.537	0.495	0.351	2.4e-37
UNIPROTKB|F1SN91	588	ZFP37 "Uncharacterized protein	0.7	0.476	0.315	3.1e-37
ZFIN|ZDB-GENE-050913-139	436	zgc:113381 "zgc:113381" [Danio	0.707	0.649	0.313	4.9e-37
ZFIN|ZDB-GENE-080219-52	456	zgc:174564 "zgc:174564" [Danio	0.615	0.539	0.344	6.3e-37
ZFIN|ZDB-GENE-050522-337	381	zgc:110238 "zgc:110238" [Danio	0.787	0.826	0.311	1.3e-36
UNIPROTKB|I3LSS6	977	I3LSS6 "Uncharacterized protei	0.64	0.262	0.356	1.5e-36

UNIPROTKB|B1AKS7 ZNF25 "Zinc finger protein 25" [Homo sapiens (taxid:9606)]

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 108/317 (34%), Positives = 145/317 (45%)

Query:    95 CRSCGLLSGSITQTYIHYLECKNRGKLYECSLCNESFENKKVLFRHLRGKHG-------- 146
             C  CG  S S  +  I + +   R K YEC  C + F +   L RHLR   G        
Sbjct:   112 CDKCGK-SFSKNEDLIRHQKIHTRDKTYECKECKKIFYHLSSLSRHLRTHAGEKPYECNQ 170

Query:   147 ------MKIKLSRH-KTKC-----VCHYCNRTFDSKAKIQEHIISSHMHEKLYQCDFCGS 194
                    K  L+ H KT        C  C + F  KA +  H   +H  EK Y+C  CG 
Sbjct:   171 CEKSFYQKPHLTEHQKTHTGEKPFECTECGKFFYVKAYLMVHQ-KTHTGEKPYECKECGK 229

Query:   195 QQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTY 254
                 K     H R     KP    C+ C + F++   L++H   H   K Y+C  CRK +
Sbjct:   230 AFSQKSHLTVHQRMHTGEKP--YKCKECGKFFSRNSHLKTHQRSHTGEKPYECKECRKCF 287

Query:   255 CHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGALTEHHQREHQGKKPV- 313
               K  LT H           +RT   ++ F C+ CGK++  K  LT+H QR+H G+KP  
Sbjct:   288 YQKSALTVH-----------QRTHTGEKPFECNKCGKTFYYKSDLTKH-QRKHTGEKPYE 335

Query:   314 CTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC 373
             CT CGK       L  H  THTG KP+ C+ CG+S+S  ++  +H   HTGE  + C  C
Sbjct:   336 CTECGKSFAVNSVLRLHQRTHTGEKPYACKECGKSFSQKSHFIIHQRKHTGEKPYECQEC 395

Query:   374 PQKFRQRSSYTLHYKTH 390
              + F Q+S  T H KTH
Sbjct:   396 GETFIQKSQLTAHQKTH 412

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|P17030 ZNF25 "Zinc finger protein 25" [Homo sapiens (taxid:9606)]

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 108/317 (34%), Positives = 145/317 (45%)

Query:    95 CRSCGLLSGSITQTYIHYLECKNRGKLYECSLCNESFENKKVLFRHLRGKHG-------- 146
             C  CG  S S  +  I + +   R K YEC  C + F +   L RHLR   G        
Sbjct:   148 CDKCGK-SFSKNEDLIRHQKIHTRDKTYECKECKKIFYHLSSLSRHLRTHAGEKPYECNQ 206

Query:   147 ------MKIKLSRH-KTKC-----VCHYCNRTFDSKAKIQEHIISSHMHEKLYQCDFCGS 194
                    K  L+ H KT        C  C + F  KA +  H   +H  EK Y+C  CG 
Sbjct:   207 CEKSFYQKPHLTEHQKTHTGEKPFECTECGKFFYVKAYLMVHQ-KTHTGEKPYECKECGK 265

Query:   195 QQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTY 254
                 K     H R     KP    C+ C + F++   L++H   H   K Y+C  CRK +
Sbjct:   266 AFSQKSHLTVHQRMHTGEKP--YKCKECGKFFSRNSHLKTHQRSHTGEKPYECKECRKCF 323

Query:   255 CHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGALTEHHQREHQGKKPV- 313
               K  LT H           +RT   ++ F C+ CGK++  K  LT+H QR+H G+KP  
Sbjct:   324 YQKSALTVH-----------QRTHTGEKPFECNKCGKTFYYKSDLTKH-QRKHTGEKPYE 371

Query:   314 CTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC 373
             CT CGK       L  H  THTG KP+ C+ CG+S+S  ++  +H   HTGE  + C  C
Sbjct:   372 CTECGKSFAVNSVLRLHQRTHTGEKPYACKECGKSFSQKSHFIIHQRKHTGEKPYECQEC 431

Query:   374 PQKFRQRSSYTLHYKTH 390
              + F Q+S  T H KTH
Sbjct:   432 GETFIQKSQLTAHQKTH 448

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1MKQ4 F1MKQ4 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 417 (151.9 bits), Expect = 2.5e-38, P = 2.5e-38
 Identities = 98/298 (32%), Positives = 136/298 (45%)

Query:    95 CRSCGLLSGSITQTYIHYLECKNRG-KLYECSLCNESFENKKVLFRHLRGKHGMKIKLSR 153
             C  CG     I + Y+   +  + G K YEC  C  +F     LF+    KH    ++ R
Sbjct:   402 CNECGRTFSHIHKAYLIAHQRLHTGEKPYECRECGRTF----FLFKSDLTKHQ---RIHR 454

Query:   154 HKTKCVCHYCNRTFDSKAKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSK 213
              +  C C  C + F SKAK+ +H   +H  E+ Y C  CG     K +   H R     +
Sbjct:   455 EEKPCECSDCKKAFRSKAKLIQHQ-RTHTRERPYGCSKCGKAFPWKSKLSLHQRTHSGER 513

Query:   214 PANLSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSEL 273
             P    C  C + F  K  L  H   H   K Y+C  C K +  K  L  H Q +H     
Sbjct:   514 P--FRCGVCDKAFMVKAHLTVHQRTHTGEKPYKCSDCEKAFSKKTQLLIH-QRIHTG--- 567

Query:   274 EKRTAILKREFICDVCGKSYVRKGALTEHHQREHQGKKPV-CTICGKMLIDKRSLANHMN 332
             E+     ++   C  CGK    K  L  H QR H G+KP  C+ C +    K  L  H+ 
Sbjct:   568 ERPYGCTEKSHECSECGKILSSKSTLIVH-QRTHTGEKPFKCSACDRAFTSKAHLVIHLR 626

Query:   333 THTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
              HTG +P+ C  C +++ST AYL +H   HTGE  + C  CPQ F Q+S+  +H +TH
Sbjct:   627 VHTGERPYECSNCEKAFSTKAYLMIHQRIHTGERPYGCSECPQAFIQKSTLIIHQRTH 684

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

ZFIN|ZDB-GENE-080220-13 zgc:171901 "zgc:171901" [Danio rerio (taxid:7955)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 88/251 (35%), Positives = 126/251 (50%)

Query:   143 GKHGMKIKLSRH--KTKCVCHYCNRTFDSKAKIQEHIISSHMHEKLYQCDFCGSQQRTKC 200
             GK  +++ +  H  +    C +C ++F  K  ++ H+I  H  EK Y C  CG +   K 
Sbjct:    97 GKRNLEVHMRIHTGEKPFTCQHCGKSFTQKGNLKSHMII-HSGEKPYACQICGKKFAQKR 155

Query:   201 RFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNL 260
                 H+R  H  + +  +C  C + FT+K  L+SHL +H   K Y C  C+ T+  K +L
Sbjct:   156 NRADHMR-LHTGEKS-FTCNLCGKSFTQKGNLKSHLIIHSGEKPYSCQQCQSTFTQKVHL 213

Query:   261 TNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGALTEHHQREHQGKKP-VCTICGK 319
               H++ VH   E         + F CD CGKS+  K +L  H  R H G+   +C  CGK
Sbjct:   214 EQHMK-VH-SGE---------KPFTCDQCGKSFTLKDSLGSH-MRAHTGESQFICHQCGK 261

Query:   320 MLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQ 379
                 K+S   H+  HTG +P+ C  CGRS+   A L VH+  HTGE  HTC LC + F Q
Sbjct:   262 SFNHKKSFNIHLRVHTGEEPYTCCWCGRSFRYKASLDVHIRVHTGENPHTCRLCGKSFTQ 321

Query:   380 RSSYTLHYKTH 390
             + S   H   H
Sbjct:   322 KGSLKAHMIIH 332

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|I3LFP7 I3LFP7 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 370 (135.3 bits), Expect = 2.4e-37, Sum P(2) = 2.4e-37
 Identities = 82/233 (35%), Positives = 113/233 (48%)

Query:   160 CHYCNRTFDSK-AKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLS 218
             CH C + F  + A I+ HII  H  EK Y+C  CG           H R     KP    
Sbjct:   196 CHECGKAFSHRSALIRHHII--HTGEKPYECSECGKAFNQSSYLTQHQRIHTGEKP--YE 251

Query:   219 CEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTA 278
             C  C + F++   L  H  +H   K Y+C  C K +  +  L  H           +RT 
Sbjct:   252 CNECGKAFSQSTFLTQHQVIHTGEKPYKCNECGKAFSDRSGLIQH-----------QRTH 300

Query:   279 ILKREFICDVCGKSYVRKGALTEHHQREHQGKKPV-CTICGKMLIDKRSLANHMNTHTGL 337
               +R + C+ CGK++    ALT+H QR H G+KP  C  C K   D+ +L  H  THTG 
Sbjct:   301 TGERPYECNECGKAFGYCSALTQH-QRTHTGEKPYKCNDCAKAFSDRSALIRHQRTHTGE 359

Query:   338 KPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
             KP+ C+ CG+++S ++ L  H   HTGE  + C  C + F Q SS + H KTH
Sbjct:   360 KPYKCKDCGKAFSQSSSLTKHQKTHTGEKPYKCKECGKAFSQSSSLSQHQKTH 412

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1SN91 ZFP37 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 401 (146.2 bits), Expect = 3.1e-37, P = 3.1e-37
 Identities = 100/317 (31%), Positives = 143/317 (45%)

Query:    95 CRSCGLLSGSITQTYIHYLECKNRGKLYECSLCNESFENKKVLFRHLRGKHGMKI----- 149
             C  CG+     +   +H        K YECS C ++  +K  L  HLR   G K      
Sbjct:   281 CNECGIAFSQKSHLVVHQ-RTHTGEKPYECSQCGKAHGHKHALTDHLRVHTGEKPYKCTE 339

Query:   150 --KLSRHKTKCV-------------CHYCNRTFDSKAKIQEHIISSHMHEKLYQCDFCGS 194
               K  RH +  +             C  C ++F   + + EH+  +H  E  Y+C+ CG 
Sbjct:   340 CGKTFRHSSNLIQHARSHTGEKPYECKECGKSFRYNSSLTEHV-RTHTGEIPYECNECGK 398

Query:   195 QQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTY 254
               +       H+R     KP    C  C + F+KK  L  H   H   K Y+C  C K +
Sbjct:   399 AFKYSSSLTKHMRIHTGEKP--FECGECKKAFSKKSHLTIHQRTHTKEKPYKCNECGKAF 456

Query:   255 CHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGALTEHHQREHQGKKPV- 313
              H  +LT H+           RT   +  F C+ CGK++ +   LT+H QR H G+KP  
Sbjct:   457 GHSSSLTYHM-----------RTHTGESPFECNQCGKAFKQIEGLTQH-QRVHTGEKPYE 504

Query:   314 CTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC 373
             C  CGK    K  L  H  THTG KP+ C  CG++++  + L +H   HTGE  + C+ C
Sbjct:   505 CNECGKAFSQKSHLIVHQRTHTGEKPYECNECGKAFNAKSQLIIHQRSHTGEKPYECNEC 564

Query:   374 PQKFRQRSSYTLHYKTH 390
              + F+Q +S T H KTH
Sbjct:   565 GKAFKQNASLTKHVKTH 581

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

ZFIN|ZDB-GENE-050913-139 zgc:113381 "zgc:113381" [Danio rerio (taxid:7955)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 98/313 (31%), Positives = 141/313 (45%)

Query:    95 CRSCGLLSGSITQTYIHYLECKNRGKLYECSLCNESFENKKVLFRHLRGKHGMKIKLSRH 154
             C  CG          +H +       L  C  C +SF  K    +H++   G K      
Sbjct:    80 CHQCGKHFSRKQSLKVH-MGIHTGENLSTCDQCGKSFNTKSGFDKHMKTHSGEK------ 132

Query:   155 KTKCVCHYCNRTFDSKAKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKP 214
                  C  C R+F  K  ++ H+ + H  EK + C+ C  + R       H R     KP
Sbjct:   133 --PFWCTECGRSFCKKYTLEMHM-AVHTGEKPFACEHCEKKFRQMGNLKAHYRVHTGEKP 189

Query:   215 ANLSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQ--------- 265
                +C+ C + FTKK  LRSH+  H   K + C  C K+Y  K +L  H++         
Sbjct:   190 --YTCQQCGKSFTKKTTLRSHIISHSGEKPFTCDQCGKSYACKDHLDRHMRIHTKDKYFI 247

Query:   266 ------NVHLKSELEKRTAI-LKREFICDVCGKSYVRKGALTEHHQREHQGKKPV-CTIC 317
                   +  LK   ++      ++  IC+ CG+S+  + A  E H R H G+KP  CT C
Sbjct:   248 CDQCGSSFKLKENFDQHMKNHAEKSLICEQCGRSFFCE-ATYEKHMRVHTGEKPYSCTEC 306

Query:   318 GKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKF 377
             GK    K +L +HM  HTG KP  CE C + +S    LKVHM  HTGE  +TC  C + F
Sbjct:   307 GKSFSQKENLTSHMRIHTGEKPFACEYCEKRFSQLPALKVHMRVHTGEKPYTCAQCGKGF 366

Query:   378 RQRSSYTLHYKTH 390
              Q++   +H +TH
Sbjct:   367 AQKNGLKIHMRTH 379

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

ZFIN|ZDB-GENE-080219-52 zgc:174564 "zgc:174564" [Danio rerio (taxid:7955)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 93/270 (34%), Positives = 129/270 (47%)

Query:   122 YECSLCNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTFDSKAKIQEHIISSH 181
             + C  C +SF  ++    H++   G K           C  C++ F  K  + EH+   H
Sbjct:    58 FTCPQCGKSFSCEQSFNLHIKFHRGTK--------PYECDQCDKIFTLKTNLNEHM-KIH 108

Query:   182 MHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHLAVHKI 241
               E LY CD CG     K R   HL+   + KP   +C+ C + F  K  L  H+ +H  
Sbjct:   109 NVEMLYTCDQCGKSFLLKERLNKHLKIHTVEKP--FTCDQCGKNFLHKGYLTEHIKIHTG 166

Query:   242 GKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGALTE 301
              K + C  C K + +K NLT+H++ VH        T   +R + CD C K +  KG L E
Sbjct:   167 EKPHTCDQCGKRFAYKGNLTDHMK-VH--------TG--ERPYACDQCAKRFKHKGNLIE 215

Query:   302 HHQREHQGKKPV-CTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMS 360
             H  + H G++P  C  CGK    K  L +HM  HTG KP  CE CGRSY+    L  HM 
Sbjct:   216 H-VKIHTGERPYSCDQCGKKFKLKHILNDHMRIHTGEKPFTCEKCGRSYTRKRNLSDHMK 274

Query:   361 CHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
              HTG   HTC  C + F +   + +H +TH
Sbjct:   275 SHTGVKLHTCDQCGKSFVKTGVFKVHLRTH 304

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-050522-337 zgc:110238 "zgc:110238" [Danio rerio (taxid:7955)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 112/359 (31%), Positives = 158/359 (44%)

Query:    66 DLKVENTVYRIKSKD---------LLASFSS-DVWDEERCRSCGLLSGSITQTYIHYLEC 115
             DLK+E+T + +K +D         L   F   +  +E +C     L+     T    L  
Sbjct:    10 DLKIEDT-FSVKHEDPEEQTELMVLKEEFQDLNEMEESQCERHQDLTTDEKSTPKKSLPH 68

Query:   116 KNRGKL-YECSLCNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTFDSKAKIQ 174
             K   K  + C +C + F  +  L  H+R   G K+          C  C ++F  K+KI 
Sbjct:    69 KRVQKNNFTCCVCGKCFSQRHSLKVHMRIHTGDKL--------FTCDQCGKSFTQKSKID 120

Query:   175 EHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRS 234
              H+   H  E+ Y C  C    R K     H+R     KP    C  C + F + + L+S
Sbjct:   121 VHM-RVHTSERHYSCPQCAKGFRQKQHLKLHMRIHSGEKP--FPCNQCGKRFNQLQALQS 177

Query:   235 HLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHL----------------KSELEKRTA 278
             H  +H   + Y C  C K++  +P+L  H++ VH                 K  L+    
Sbjct:   178 HFTIHSGERPYACTQCEKSFRQRPSLEKHLK-VHSREKPFTCSQCGNGFTQKERLQNHMR 236

Query:   279 ILKRE--FICDVCGKSYVRKGALTEHHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHT 335
             I   E  F C  C K++  +  L   H R H G+KP VCT CGK    K SL  HM THT
Sbjct:   237 IHTGEKPFACPHCEKTFAHRSNLY-FHVRTHSGEKPFVCTHCGKSFRCKNSLVGHMRTHT 295

Query:   336 GLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGV 394
             G KP  C+ CG+S+S    LK HMS HTGE  +TC  C + F ++ S   H   H  G+
Sbjct:   296 GEKPFACDQCGKSFSREFNLKCHMSNHTGEKPYTCGQCGKSFVRKDSLNRHELIHSKGI 354

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|I3LSS6 I3LSS6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 404 (147.3 bits), Expect = 1.5e-36, P = 1.5e-36
 Identities = 104/292 (35%), Positives = 140/292 (47%)

Query:   120 KLYECSLCNESFENKKVLFRHLR-------------GKH-GMKIKLSRH-KTKC-----V 159
             K YEC  C ++F  K  L  H R             GK    K  LS+H +T        
Sbjct:   435 KPYECYECGKTFCLKSDLTVHQRTHTGEKPFACSECGKFFSHKSTLSQHYRTHTGEKPYE 494

Query:   160 CHYCNRTFDSKAKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSC 219
             CH C + F +K+ + +H   +H  EK Y+C  CG     K +   H R     KP    C
Sbjct:   495 CHECGKIFYNKSYLTKHN-RTHTGEKPYECSECGKTFCQKSQLTQHQRIHIGEKP--YEC 551

Query:   220 EFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAI 279
               C + F  K  L  H   H   K Y+C  C K++C K  LT H Q  H        T  
Sbjct:   552 SECGKAFCHKSALIVHQRTHTEEKPYKCNECGKSFCVKSGLTLH-QRKH--------TG- 601

Query:   280 LKREFICDVCGKSYVRKGALTEHHQREHQGKKPV-CTICGKMLIDKRSLANHMNTHTGLK 338
              ++ + C+ CGKS+  K +LT HH R H G+K   C  CGK+   K  LA H  +HTG K
Sbjct:   602 -EKPYECNECGKSFSHKSSLTVHH-RAHTGEKSCQCNECGKVFYRKSDLAKHQRSHTGEK 659

Query:   339 PHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
             P+ C +CG+++S  + L VH   HTGE  + CH C + F Q+SS+T H +TH
Sbjct:   660 PYECNVCGKTFSQKSNLIVHQRTHTGEEPYKCHKCGKTFNQKSSHTRHQRTH 711

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	400
KOG1074|consensus	958		99.97
KOG2462|consensus	279		99.96
KOG3608|consensus	467		99.95
KOG3608|consensus	467		99.94
KOG3623|consensus	1007		99.93
KOG2462|consensus	279		99.91
KOG1074|consensus	958		99.91
KOG3623|consensus	1007		99.84
KOG3576|consensus	267		99.75
KOG3576|consensus	267		99.65
PLN03086	567	PRLI-interacting factor K; Provisional	99.42
PHA00733	128	hypothetical protein	99.24
PLN03086	567	PRLI-interacting factor K; Provisional	99.14
PHA00733	128	hypothetical protein	99.04
PHA02768	55	hypothetical protein; Provisional	99.0
KOG3993|consensus	500		98.99
KOG3993|consensus	500		98.98
PHA02768	55	hypothetical protein; Provisional	98.84
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.72
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.67
PHA00616	44	hypothetical protein	98.52
PHA00732	79	hypothetical protein	98.44
PHA00616	44	hypothetical protein	98.34
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.26
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.25
PHA00732	79	hypothetical protein	98.12
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.92
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.91
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.87
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.78
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.74
KOG1146|consensus	1406		97.72
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.65
COG5236	493	Uncharacterized conserved protein, contains RING Z	97.55
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.54
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.5
KOG1146|consensus	1406		97.46
KOG2231|consensus	669		97.45
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	97.4
KOG2231|consensus	669		97.39
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.36
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.11
KOG2482|consensus	423		97.08
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.03
COG5236	493	Uncharacterized conserved protein, contains RING Z	97.03
smart00355	26	ZnF_C2H2 zinc finger.	96.87
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	96.82
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.77
smart00355	26	ZnF_C2H2 zinc finger.	96.76
KOG2482|consensus	423		96.69
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.63
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.61
PRK04860	160	hypothetical protein; Provisional	96.55
KOG2785|consensus	390		96.44
KOG2785|consensus	390		96.2
KOG4173|consensus	253		95.75
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	95.75
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	95.61
PRK04860	160	hypothetical protein; Provisional	95.36
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	94.73
KOG4173|consensus	253		94.66
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	93.97
COG4049	65	Uncharacterized protein containing archaeal-type C	93.44
COG5048	467	FOG: Zn-finger [General function prediction only]	93.25
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	93.2
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	92.94
COG5048	467	FOG: Zn-finger [General function prediction only]	92.92
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	92.78
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	91.45
KOG2893|consensus	341		91.37
COG4049	65	Uncharacterized protein containing archaeal-type C	91.31
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	90.68
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	89.75
KOG2893|consensus	341		89.66
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	88.4
cd00729	34	rubredoxin_SM Rubredoxin, Small Modular nonheme ir	86.99
PF02892	45	zf-BED: BED zinc finger; InterPro: IPR003656 Zinc	85.98
COG2879	65	Uncharacterized small protein [Function unknown]	84.4
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	84.04
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	83.82
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	83.56
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	82.75
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	82.32
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	81.51
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	80.01

>KOG1074|consensus

Probab=99.97  E-value=2.1e-32  Score=255.82  Aligned_cols=242  Identities=25%  Similarity=0.502  Sum_probs=179.8

Q ss_pred             CCccccccccccccCHHHHHHhHhhcCCCCCcccCCCCCCccCCHHHHHHHHHhhcCCCC--CCcccC---cCccccCCH
Q psy4576         155 KTKCVCHYCNRTFDSKAKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKP--ANLSCE---FCSRIFTKK  229 (400)
Q Consensus       155 ~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~--~~~~C~---~C~~~f~~~  229 (400)
                      ..+-.|-+|.++..-++.|+.|. +.|++++||+|.+||+.|.++.+|+.||..|-...+  ..+.|+   +|.+.|...
T Consensus       603 TdPNqCiiC~rVlSC~saLqmHy-rtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~kftn~  681 (958)
T KOG1074|consen  603 TDPNQCIICLRVLSCPSALQMHY-RTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKKFTNA  681 (958)
T ss_pred             CCccceeeeeecccchhhhhhhh-hcccCcCccccccccchhccccchhhcccccccCccccccccCCchhhhccccccc
Confidence            34568999999999999999998 899999999999999999999999999988765433  357999   999999999


Q ss_pred             HHHHHHHHHcCCCC-------------ceecccccccccChhHHhhhHhhhcchh-----hHHHHhhhcCC----ccccc
Q psy4576         230 ELLRSHLAVHKIGK-------------NYQCYYCRKTYCHKPNLTNHIQNVHLKS-----ELEKRTAILKR----EFICD  287 (400)
Q Consensus       230 ~~l~~H~~~h~~~~-------------~~~C~~C~~~f~~~~~l~~H~~~~h~~~-----~~~~~~~~~~~----~~~C~  287 (400)
                      -.|..|+++|.+..             .-+|..|.+.|.....+..++..+-+..     ....+..+.+.    +..+.
T Consensus       682 V~lpQhIriH~~~~~s~g~~a~e~~~~adq~~~~qk~~~~a~~f~~~~se~~~~~s~~~~~~~~~t~t~~~~~tp~~~e~  761 (958)
T KOG1074|consen  682 VTLPQHIRIHLGGQISNGGTAAEGILAADQCSSCQKTFSDARSFSQQISEQPSPESEPDEQMDERTETEELDVTPPPPEN  761 (958)
T ss_pred             ccccceEEeecCCCCCCCcccccccchhcccchhhhcccccccchhhhhccCCcccCCcccccccccccccccCCCcccc
Confidence            99999999987421             2479999999999999999886663222     11122333322    56788


Q ss_pred             cccccccChhhHHHHHhhh-----------------------cCCCCC-cccccccccCCHHHHHHHHH-----------
Q psy4576         288 VCGKSYVRKGALTEHHQRE-----------------------HQGKKP-VCTICGKMLIDKRSLANHMN-----------  332 (400)
Q Consensus       288 ~C~~~f~~~~~l~~H~~~~-----------------------h~~~~~-~C~~C~~~f~~~~~l~~H~~-----------  332 (400)
                      .|+..+.....+..+-...                       ..++.. .+.+++..-...-...--+.           
T Consensus       762 ~~~~~~~~e~~i~~~g~te~asa~~~~vg~~s~~~~~~~~~~T~~k~~~~~~~~~~~~~~~v~~~pvl~~~~~~~l~eg~  841 (958)
T KOG1074|consen  762 SCGRELEGEMAISVRGSTEEASANLDEVGTVSAAGEAGEEDDTSEKPTQASSFPGEILAPSVNMDPVLWNQETSMLNEGL  841 (958)
T ss_pred             ccccccCcccccccccchhhhhcChhhhcCccccchhhhhcccCCCCcccccCCCcCCccccccCchhhccccccccccc
Confidence            8988888776665542111                       011223 45555543322211100000           


Q ss_pred             -------HhcC------------------------CCCeecccccccccChhhHHHHHhhcCCCCcccCCCCccccCCch
Q psy4576         333 -------THTG------------------------LKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRS  381 (400)
Q Consensus       333 -------~h~~------------------------~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~  381 (400)
                             ++.+                        .....|..|++.|...++|..|+++|+++|||.|.+|++.|..+.
T Consensus       842 ~t~~n~~t~~~~~~sv~qs~~~p~l~p~l~~~~pvnn~h~C~vCgk~FsSSsALqiH~rTHtg~KPF~C~fC~~aFttrg  921 (958)
T KOG1074|consen  842 ATKTNEITPEGPADSVIQSGGVPTLEPSLGRPGPVNNAHVCNVCGKQFSSSAALEIHMRTHTGPKPFFCHFCEEAFTTRG  921 (958)
T ss_pred             ccccccccCCCcchhhhhhccccccCCCCCCCCcccchhhhccchhcccchHHHHHhhhcCCCCCCccchhhhhhhhhhh
Confidence                   0000                        012689999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhCCCCCCC
Q psy4576         382 SYTLHYKTHHPGVIPP  397 (400)
Q Consensus       382 ~l~~H~~~hh~~~~~~  397 (400)
                      +|+.||.+|+...++.
T Consensus       922 nLKvHMgtH~w~q~~s  937 (958)
T KOG1074|consen  922 NLKVHMGTHMWVQPPS  937 (958)
T ss_pred             hhhhhhccccccCCCc
Confidence            9999999999776653

>KOG2462|consensus

Probab=99.96  E-value=7.7e-30  Score=211.28  Aligned_cols=138  Identities=35%  Similarity=0.654  Sum_probs=124.5

Q ss_pred             CCceecccccccccChhHHhhhHhhhcchhhHHHHhhhcCCccccccccccccChhhHHHHHhhhcCCCCCccccccccc
Q psy4576         242 GKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGALTEHHQREHQGKKPVCTICGKML  321 (400)
Q Consensus       242 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~C~~C~~~f  321 (400)
                      ...|+|+.|++.+.+.++|.+|.+.|-.        ....+.+.|.+|++.|.+...|..|+ +.|. -+.+|.+||+.|
T Consensus       128 ~~r~~c~eCgk~ysT~snLsrHkQ~H~~--------~~s~ka~~C~~C~K~YvSmpALkMHi-rTH~-l~c~C~iCGKaF  197 (279)
T KOG2462|consen  128 HPRYKCPECGKSYSTSSNLSRHKQTHRS--------LDSKKAFSCKYCGKVYVSMPALKMHI-RTHT-LPCECGICGKAF  197 (279)
T ss_pred             CCceeccccccccccccccchhhccccc--------ccccccccCCCCCceeeehHHHhhHh-hccC-CCcccccccccc
Confidence            3458888888888888888888876643        33367799999999999999999998 6665 566999999999


Q ss_pred             CCHHHHHHHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCCccccCCchHHHHHHhh
Q psy4576         322 IDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKT  389 (400)
Q Consensus       322 ~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~  389 (400)
                      .....|+.|+|+|+|||||.|+.|+++|.++++|+.||++|.+.|+|+|..|+++|+..+.|.+|...
T Consensus       198 SRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~ES  265 (279)
T KOG2462|consen  198 SRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSES  265 (279)
T ss_pred             cchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999865

>KOG3608|consensus

Probab=99.95  E-value=3.3e-27  Score=200.37  Aligned_cols=192  Identities=30%  Similarity=0.574  Sum_probs=98.6

Q ss_pred             cccccccCHHHHHHhHhhcCCCCCcccCCCCCCccCCHHHHHHHHHhhcCCCCCCcccCcCccccCCHHHHHHHHHHcCC
Q psy4576         162 YCNRTFDSKAKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHLAVHKI  241 (400)
Q Consensus       162 ~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  241 (400)
                      .|.+.|.+++.|++|+ +.|++++...|+.||..|+++..|..|++.........|.|..|.+.|.+...|..|+..|. 
T Consensus       184 ~Ct~~~~~k~~LreH~-r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHv-  261 (467)
T KOG3608|consen  184 MCTKHMGNKYRLREHI-RTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHV-  261 (467)
T ss_pred             hhhhhhccHHHHHHHH-HhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhh-
Confidence            4555555555555555 45555555555555555555555555555544444444555555555555555555555443 


Q ss_pred             CCceecccccccccChhHHhhhHhhhcchhhHHHHhhhcCCccccccccccccChhhHHHHHhhhcCCCCC-cccccccc
Q psy4576         242 GKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGALTEHHQREHQGKKP-VCTICGKM  320 (400)
Q Consensus       242 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~-~C~~C~~~  320 (400)
                       .-|+|+.|+.+....++|..|+                                       +..|...++ +|+.|++.
T Consensus       262 -n~ykCplCdmtc~~~ssL~~H~---------------------------------------r~rHs~dkpfKCd~Cd~~  301 (467)
T KOG3608|consen  262 -NCYKCPLCDMTCSSASSLTTHI---------------------------------------RYRHSKDKPFKCDECDTR  301 (467)
T ss_pred             -hcccccccccCCCChHHHHHHH---------------------------------------HhhhccCCCccccchhhh
Confidence             2345555555555555555554                                       444433322 55555555


Q ss_pred             cCCHHHHHHHHHHhcCCCCeeccc--ccccccChhhHHHHHhhcC-C--CCcccCCCCccccCCchHHHHHHhhhCCCCC
Q psy4576         321 LIDKRSLANHMNTHTGLKPHCCEI--CGRSYSTAAYLKVHMSCHT-G--ETSHTCHLCPQKFRQRSSYTLHYKTHHPGVI  395 (400)
Q Consensus       321 f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~L~~H~~~h~-~--~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~  395 (400)
                      |...+.|.+|+..|. +..|+|..  |.++|.+..+|.+|++.++ |  ..+|.|..|.+.|++..+|.+|++..|+-+.
T Consensus       302 c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~Cdr~ft~G~~L~~HL~kkH~f~~  380 (467)
T KOG3608|consen  302 CVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPILYACHCCDRFFTSGKSLSAHLMKKHGFRL  380 (467)
T ss_pred             hccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCceeeecchhhhccchhHHHHHHHhhcccC
Confidence            555555555555444 34455555  5555555555555554433 2  2235555555555555555555555554443


Q ss_pred             C
Q psy4576         396 P  396 (400)
Q Consensus       396 ~  396 (400)
                      |
T Consensus       381 P  381 (467)
T KOG3608|consen  381 P  381 (467)
T ss_pred             C
Confidence            3

>KOG3608|consensus

Probab=99.94  E-value=6.1e-26  Score=192.74  Aligned_cols=198  Identities=23%  Similarity=0.457  Sum_probs=169.2

Q ss_pred             ccCCC--CCCccCCHHHHHHHHHhhcC-----------CCCCCccc--CcCccccCCHHHHHHHHHHcCCCCceeccccc
Q psy4576         187 YQCDF--CGSQQRTKCRFYYHLRDKHL-----------SKPANLSC--EFCSRIFTKKELLRSHLAVHKIGKNYQCYYCR  251 (400)
Q Consensus       187 ~~C~~--C~~~f~~~~~l~~H~~~~~~-----------~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~  251 (400)
                      |.|.+  |+..|.+...+..|+..|..           .+...+.|  ..|.+.+.++..|++|++.|++++...|+.|+
T Consensus       135 f~C~WedCe~~F~s~~ef~dHV~~H~l~ceyd~~~~~~D~~pv~~C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg  214 (467)
T KOG3608|consen  135 FRCGWEDCEREFVSIVEFQDHVVKHALFCEYDIQKTPEDERPVTMCNWAMCTKHMGNKYRLREHIRTHSNEKVVACPHCG  214 (467)
T ss_pred             hccChhhcCCcccCHHHHHHHHHHhhhhhhhhhhhCCCCCCceeeccchhhhhhhccHHHHHHHHHhcCCCeEEecchHH
Confidence            55543  77788888888777766542           11123455  45999999999999999999999999999999


Q ss_pred             ccccChhHHhhhHhhhcchhhHHHHhhhcCCccccccccccccChhhHHHHHhhhcCCCCCcccccccccCCHHHHHHHH
Q psy4576         252 KTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGALTEHHQREHQGKKPVCTICGKMLIDKRSLANHM  331 (400)
Q Consensus       252 ~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~C~~C~~~f~~~~~l~~H~  331 (400)
                      ..|++...|..|++.         ++.....+|.|..|.+.|.+...|..|+ ..| ..-|+|+.|+.+....++|..|+
T Consensus       215 ~~F~~~tkl~DH~rR---------qt~l~~n~fqC~~C~KrFaTeklL~~Hv-~rH-vn~ykCplCdmtc~~~ssL~~H~  283 (467)
T KOG3608|consen  215 ELFRTKTKLFDHLRR---------QTELNTNSFQCAQCFKRFATEKLLKSHV-VRH-VNCYKCPLCDMTCSSASSLTTHI  283 (467)
T ss_pred             HHhccccHHHHHHHh---------hhhhcCCchHHHHHHHHHhHHHHHHHHH-HHh-hhcccccccccCCCChHHHHHHH
Confidence            999999999999965         4455567899999999999999999998 444 24679999999999999999999


Q ss_pred             HH-hcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCC--CccccCCchHHHHHHhhhCCC-CCC
Q psy4576         332 NT-HTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHL--CPQKFRQRSSYTLHYKTHHPG-VIP  396 (400)
Q Consensus       332 ~~-h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~hh~~-~~~  396 (400)
                      +. |...+||+|..|++.|...+.|.+|+.+|+ +..|+|..  |.++|.+..+|.+|++.+|.+ .|+
T Consensus       284 r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~  351 (467)
T KOG3608|consen  284 RYRHSKDKPFKCDECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPI  351 (467)
T ss_pred             HhhhccCCCccccchhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHHHHHHHhccCCCCC
Confidence            85 888999999999999999999999999998 66799998  999999999999999999944 444

>KOG3623|consensus

Probab=99.93  E-value=3.1e-26  Score=211.16  Aligned_cols=116  Identities=22%  Similarity=0.361  Sum_probs=100.8

Q ss_pred             ccccCcccccccChhHHHHHHhhhcCC-CCcccccccccccCChHHHHHHhhhhcCCccc-----ccCCCCccccccccc
Q psy4576          92 EERCRSCGLLSGSITQTYIHYLECKNR-GKLYECSLCNESFENKKVLFRHLRGKHGMKIK-----LSRHKTKCVCHYCNR  165 (400)
Q Consensus        92 ~~~C~~C~~~f~~~~~l~~H~~~~h~~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~-----~~~~~~~~~C~~C~~  165 (400)
                      ...|++|...+.....|..|.+-.|.. +..|.|.+|.++|..+..|.+||..|......     ......+|+|..|++
T Consensus       210 lltcpycdrgykrltslkeHikyrhekne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKCtECgK  289 (1007)
T KOG3623|consen  210 LLTCPYCDRGYKRLTSLKEHIKYRHEKNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKCTECGK  289 (1007)
T ss_pred             hhcchhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhccccccccch
Confidence            468999999999999999997666643 56699999999999999999999998764432     112256899999999


Q ss_pred             cccCHHHHHHhHhhcCCCCCcccCCCCCCccCCHHHHHHHHHh
Q psy4576         166 TFDSKAKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRD  208 (400)
Q Consensus       166 ~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~  208 (400)
                      .|..+..|+.|+ ++|.|++||.|+.|++.|.....+..||..
T Consensus       290 AFKfKHHLKEHl-RIHSGEKPfeCpnCkKRFSHSGSySSHmSS  331 (1007)
T KOG3623|consen  290 AFKFKHHLKEHL-RIHSGEKPFECPNCKKRFSHSGSYSSHMSS  331 (1007)
T ss_pred             hhhhHHHHHhhh-eeecCCCCcCCcccccccccCCcccccccc
Confidence            999999999999 999999999999999999999998888764

>KOG2462|consensus

Probab=99.91  E-value=6.3e-25  Score=182.20  Aligned_cols=138  Identities=28%  Similarity=0.573  Sum_probs=99.1

Q ss_pred             CCCcccccccccccCChHHHHHHhhhhcCCcccccCCCCccccccccccccCHHHHHHhHhhcCCCCCcccCCCCCCccC
Q psy4576         118 RGKLYECSLCNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTFDSKAKIQEHIISSHMHEKLYQCDFCGSQQR  197 (400)
Q Consensus       118 ~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~  197 (400)
                      ....|+|+.|++.+.+.+.|.+|.+.|-....     ...+.|++|+++|.+...|+.|+ +.|+  -++.|.+||+.|.
T Consensus       127 ~~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s-----~ka~~C~~C~K~YvSmpALkMHi-rTH~--l~c~C~iCGKaFS  198 (279)
T KOG2462|consen  127 KHPRYKCPECGKSYSTSSNLSRHKQTHRSLDS-----KKAFSCKYCGKVYVSMPALKMHI-RTHT--LPCECGICGKAFS  198 (279)
T ss_pred             cCCceeccccccccccccccchhhcccccccc-----cccccCCCCCceeeehHHHhhHh-hccC--CCccccccccccc
Confidence            34567888888888888888888777765432     33446777777777777777777 5564  5677777777777


Q ss_pred             CHHHHHHHHHhhcCCCCCCcccCcCccccCCHHHHHHHHHHcCCCCceecccccccccChhHHhhhHh
Q psy4576         198 TKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQ  265 (400)
Q Consensus       198 ~~~~l~~H~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~  265 (400)
                      ..+.|.-|+|+|.+++|+  .|+.|++.|.+++.|+.|+++|.+.++|.|..|+++|...+-|.+|..
T Consensus       199 RPWLLQGHiRTHTGEKPF--~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~E  264 (279)
T KOG2462|consen  199 RPWLLQGHIRTHTGEKPF--SCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSE  264 (279)
T ss_pred             chHHhhcccccccCCCCc--cCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhh
Confidence            777777777777777764  777777777777777777777777777777777777777777777753

>KOG1074|consensus

Probab=99.91  E-value=2.2e-25  Score=209.08  Aligned_cols=134  Identities=24%  Similarity=0.505  Sum_probs=104.7

Q ss_pred             cccCcCccccCCHHHHHHHHHHcCCCCceecccccccccChhHHhhhHhhhcchhhHHHHhhhcCCccccc---cccccc
Q psy4576         217 LSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICD---VCGKSY  293 (400)
Q Consensus       217 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~~~~C~---~C~~~f  293 (400)
                      -.|-+|.++..-.+.|+-|++.|+|++||+|.+|++.|.++.+|+.|+-.|-       ......-.|.|+   +|.+.|
T Consensus       606 NqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHk-------a~p~~R~q~ScP~~~ic~~kf  678 (958)
T KOG1074|consen  606 NQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHK-------AKPPARVQFSCPSTFICQKKF  678 (958)
T ss_pred             cceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccc-------cCccccccccCCchhhhcccc
Confidence            5799999999999999999999999999999999999999999999985443       223334568999   999999


Q ss_pred             cChhhHHHHHhhhcCC-CC-------------CcccccccccCCHHHHHHHHHHhcC----------------CC----C
Q psy4576         294 VRKGALTEHHQREHQG-KK-------------PVCTICGKMLIDKRSLANHMNTHTG----------------LK----P  339 (400)
Q Consensus       294 ~~~~~l~~H~~~~h~~-~~-------------~~C~~C~~~f~~~~~l~~H~~~h~~----------------~~----~  339 (400)
                      .+...|..|+ +.|.+ ..             -+|..|.+.|.....+..++-.|.+                +.    +
T Consensus       679 tn~V~lpQhI-riH~~~~~s~g~~a~e~~~~adq~~~~qk~~~~a~~f~~~~se~~~~~s~~~~~~~~~t~t~~~~~tp~  757 (958)
T KOG1074|consen  679 TNAVTLPQHI-RIHLGGQISNGGTAAEGILAADQCSSCQKTFSDARSFSQQISEQPSPESEPDEQMDERTETEELDVTPP  757 (958)
T ss_pred             cccccccceE-EeecCCCCCCCcccccccchhcccchhhhcccccccchhhhhccCCcccCCcccccccccccccccCCC
Confidence            9999999998 66542 11             1799999999888888888766621                12    4


Q ss_pred             eecccccccccChhhHHHH
Q psy4576         340 HCCEICGRSYSTAAYLKVH  358 (400)
Q Consensus       340 ~~C~~C~~~f~~~~~L~~H  358 (400)
                      ..+..|+..+.....+..+
T Consensus       758 ~~e~~~~~~~~~e~~i~~~  776 (958)
T KOG1074|consen  758 PPENSCGRELEGEMAISVR  776 (958)
T ss_pred             ccccccccccCcccccccc
Confidence            5677777766555554444

>KOG3623|consensus

Probab=99.84  E-value=1.6e-21  Score=180.25  Aligned_cols=76  Identities=32%  Similarity=0.682  Sum_probs=74.0

Q ss_pred             cccccccccCCHHHHHHHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCCccccCCchHHHHHHh
Q psy4576         313 VCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYK  388 (400)
Q Consensus       313 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~  388 (400)
                      .|+.|+++|...++|.+|.--|+|.+||+|.+|.|+|..+-.|..|+|.|.|+|||+|+.|+++|+....+..||.
T Consensus       896 aCDqCDK~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKClKRFSHSGSYSQHMN  971 (1007)
T KOG3623|consen  896 ACDQCDKAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCLKRFSHSGSYSQHMN  971 (1007)
T ss_pred             hHHHHHHHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcchhhhhhhhcccccchHhhhc
Confidence            3999999999999999999999999999999999999999999999999999999999999999999999999985

>KOG3576|consensus

Probab=99.75  E-value=2e-19  Score=141.72  Aligned_cols=117  Identities=31%  Similarity=0.590  Sum_probs=104.2

Q ss_pred             cCCccccccccccccChhhHHHHHhhhcCCCCCcccccccccCCHHHHHHHHHHhcCCCCeecccccccccChhhHHHHH
Q psy4576         280 LKREFICDVCGKSYVRKGALTEHHQREHQGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHM  359 (400)
Q Consensus       280 ~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~  359 (400)
                      +...|.|.+|++.|.-...|.+|+.-+...+++-|..||+.|.+...|++|+++|+|.+||+|..|+++|++.-+|..|+
T Consensus       114 d~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl  193 (267)
T KOG3576|consen  114 DQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHL  193 (267)
T ss_pred             CCCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHH
Confidence            35668999999999999999999844445566799999999999999999999999999999999999999999999999


Q ss_pred             hhcCC-----------CCcccCCCCccccCCchHHHHHHhhhCCCCCC
Q psy4576         360 SCHTG-----------ETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIP  396 (400)
Q Consensus       360 ~~h~~-----------~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~  396 (400)
                      +..+|           .+.|.|..||++-.....+..|++.||+..|+
T Consensus       194 ~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~Spa  241 (267)
T KOG3576|consen  194 KKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPFSPA  241 (267)
T ss_pred             HHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCCCHH
Confidence            76554           36799999999999999999999999998654

>KOG3576|consensus

Probab=99.65  E-value=6.1e-17  Score=127.76  Aligned_cols=124  Identities=22%  Similarity=0.419  Sum_probs=89.2

Q ss_pred             CcccCCCCCCccCCHHHHHHHHHhhcCCCCCCcccCcCccccCCHHHHHHHHHHcCCCCceecccccccccChhHHhhhH
Q psy4576         185 KLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHI  264 (400)
Q Consensus       185 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~  264 (400)
                      ..|.|.+|++.|.-...|.+|++-|...+  .+.|..||+.|.+.-+|++|++.|++.+||+|..|++.|...-+|..|+
T Consensus       116 d~ftCrvCgK~F~lQRmlnrh~kch~~vk--r~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl  193 (267)
T KOG3576|consen  116 DSFTCRVCGKKFGLQRMLNRHLKCHSDVK--RHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHL  193 (267)
T ss_pred             CeeeeehhhhhhhHHHHHHHHhhhccHHH--HHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHH
Confidence            34555555555555555555555544322  2478888888888888888888888888899999999998888899998


Q ss_pred             hhhcchhhHHHHhhhcCCccccccccccccChhhHHHHHhhhcCCC
Q psy4576         265 QNVHLKSELEKRTAILKREFICDVCGKSYVRKGALTEHHQREHQGK  310 (400)
Q Consensus       265 ~~~h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  310 (400)
                      +..|+....-.-.....+.|.|..||..-.....+..|+..+|...
T Consensus       194 ~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~S  239 (267)
T KOG3576|consen  194 KKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPFS  239 (267)
T ss_pred             HHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCCC
Confidence            8888775443334445567888888888888888888876666543

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.42  E-value=6.7e-13  Score=124.78  Aligned_cols=147  Identities=22%  Similarity=0.479  Sum_probs=116.6

Q ss_pred             cccCcCccccCCHHHHHHHHHHcCCCCceeccc--ccccccChhHHhhhHhhhcchhhHHHHhhhcCCcccccccccccc
Q psy4576         217 LSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYY--CRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYV  294 (400)
Q Consensus       217 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~~~~C~~C~~~f~  294 (400)
                      ..|+.|....... .|..|..... .....|+.  |+..|. ...+..|                    +.|+.|++.|.
T Consensus       408 V~C~NC~~~i~l~-~l~lHe~~C~-r~~V~Cp~~~Cg~v~~-r~el~~H--------------------~~C~~Cgk~f~  464 (567)
T PLN03086        408 VECRNCKHYIPSR-SIALHEAYCS-RHNVVCPHDGCGIVLR-VEEAKNH--------------------VHCEKCGQAFQ  464 (567)
T ss_pred             EECCCCCCccchh-HHHHHHhhCC-CcceeCCcccccceee-ccccccC--------------------ccCCCCCCccc
Confidence            3788888876654 4667875443 35567885  999884 4445555                    57999999996


Q ss_pred             ChhhHHHHHhhhcCCCCCcccccccccCCHHHHHHHHHHhcCCCCeeccccccccc----------ChhhHHHHHhhcCC
Q psy4576         295 RKGALTEHHQREHQGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYS----------TAAYLKVHMSCHTG  364 (400)
Q Consensus       295 ~~~~l~~H~~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~----------~~~~L~~H~~~h~~  364 (400)
                       ...|..|+...|  .++.|+ |++.+ .+..|..|+.+|.+.+++.|..|++.|.          ..+.|..|.... |
T Consensus       465 -~s~LekH~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~C-G  538 (567)
T PLN03086        465 -QGEMEKHMKVFH--EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESIC-G  538 (567)
T ss_pred             -hHHHHHHHHhcC--CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhc-C
Confidence             678999986655  678999 99755 6789999999999999999999999995          245899999885 8


Q ss_pred             CCcccCCCCccccCCchHHHHHHhhhCCC
Q psy4576         365 ETSHTCHLCPQKFRQRSSYTLHYKTHHPG  393 (400)
Q Consensus       365 ~~~~~C~~C~~~f~~~~~l~~H~~~hh~~  393 (400)
                      .+++.|..||+.+..+ .|..|+...|..
T Consensus       539 ~rt~~C~~Cgk~Vrlr-dm~~H~~~~h~~  566 (567)
T PLN03086        539 SRTAPCDSCGRSVMLK-EMDIHQIAVHQK  566 (567)
T ss_pred             CcceEccccCCeeeeh-hHHHHHHHhhcC
Confidence            9999999999998766 489999887753

>PHA00733 hypothetical protein

Probab=99.24  E-value=7.2e-12  Score=96.20  Aligned_cols=79  Identities=22%  Similarity=0.439  Sum_probs=61.8

Q ss_pred             CcccccccccCCHHHHHH------HHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCCccccCCchHHHH
Q psy4576         312 PVCTICGKMLIDKRSLAN------HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTL  385 (400)
Q Consensus       312 ~~C~~C~~~f~~~~~l~~------H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~  385 (400)
                      +.|.+|...|.....|..      |+. +.+.+||.|+.|++.|.....|..|++.|  +.+|.|+.|++.|.....|..
T Consensus        41 ~~~~~~~~~~~~~~~l~~~~~l~~~~~-~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C~~CgK~F~~~~sL~~  117 (128)
T PHA00733         41 LIRAVVKTLIYNPQLLDESSYLYKLLT-SKAVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVCPVCGKEFRNTDSTLD  117 (128)
T ss_pred             HHHHHHhhhccChhhhcchHHHHhhcc-cCCCCCccCCCCCCcCCCHHHHHHHHhcC--CcCccCCCCCCccCCHHHHHH
Confidence            355566555555544444      333 34578999999999999999999999876  357999999999999999999


Q ss_pred             HHhhhCCC
Q psy4576         386 HYKTHHPG  393 (400)
Q Consensus       386 H~~~hh~~  393 (400)
                      |+...|+-
T Consensus       118 H~~~~h~~  125 (128)
T PHA00733        118 HVCKKHNI  125 (128)
T ss_pred             HHHHhcCc
Confidence            99998863

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.14  E-value=1.5e-10  Score=109.24  Aligned_cols=147  Identities=22%  Similarity=0.419  Sum_probs=100.2

Q ss_pred             cccccccccccCChHHHHHHhhhhcCCcccccCCCCcccccc--ccccccCHHHHHHhHhhcCCCCCcccCCCCCCccCC
Q psy4576         121 LYECSLCNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHY--CNRTFDSKAKIQEHIISSHMHEKLYQCDFCGSQQRT  198 (400)
Q Consensus       121 ~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~  198 (400)
                      .-.|+.|.+.... ..|..|....--.. .        .|+.  |+..|. +..+..|          +.|+.|++.|. 
T Consensus       407 ~V~C~NC~~~i~l-~~l~lHe~~C~r~~-V--------~Cp~~~Cg~v~~-r~el~~H----------~~C~~Cgk~f~-  464 (567)
T PLN03086        407 TVECRNCKHYIPS-RSIALHEAYCSRHN-V--------VCPHDGCGIVLR-VEEAKNH----------VHCEKCGQAFQ-  464 (567)
T ss_pred             eEECCCCCCccch-hHHHHHHhhCCCcc-e--------eCCcccccceee-ccccccC----------ccCCCCCCccc-
Confidence            4568888776654 34556764432211 1        5774  888873 3444444          47888888885 


Q ss_pred             HHHHHHHHHhhcCCCCCCcccCcCccccCCHHHHHHHHHHcCCCCceecccccccccC----------hhHHhhhHhhhc
Q psy4576         199 KCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCH----------KPNLTNHIQNVH  268 (400)
Q Consensus       199 ~~~l~~H~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~----------~~~l~~H~~~~h  268 (400)
                      ...|..|+..+|  .  .+.|+ |+..+ ....|..|+..|.+.+++.|.+|++.|..          ...|..|.    
T Consensus       465 ~s~LekH~~~~H--k--pv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE----  534 (567)
T PLN03086        465 QGEMEKHMKVFH--E--PLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHE----  534 (567)
T ss_pred             hHHHHHHHHhcC--C--CccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHH----
Confidence            577888888875  2  35888 88655 55788888888888888888888888741          34677775    


Q ss_pred             chhhHHHHhhhcCCccccccccccccChhhHHHHHhhhcC
Q psy4576         269 LKSELEKRTAILKREFICDVCGKSYVRKGALTEHHQREHQ  308 (400)
Q Consensus       269 ~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  308 (400)
                             .. .+.+++.|..||+.+..+ .|..|+...|.
T Consensus       535 -------~~-CG~rt~~C~~Cgk~Vrlr-dm~~H~~~~h~  565 (567)
T PLN03086        535 -------SI-CGSRTAPCDSCGRSVMLK-EMDIHQIAVHQ  565 (567)
T ss_pred             -------Hh-cCCcceEccccCCeeeeh-hHHHHHHHhhc
Confidence                   22 467788888888887655 57778777665

>PHA00733 hypothetical protein

Probab=99.04  E-value=2.3e-10  Score=87.96  Aligned_cols=82  Identities=17%  Similarity=0.292  Sum_probs=62.3

Q ss_pred             CCccccccccccccChhhHHHH-----HhhhcCCCCCcccccccccCCHHHHHHHHHHhcCCCCeecccccccccChhhH
Q psy4576         281 KREFICDVCGKSYVRKGALTEH-----HQREHQGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYL  355 (400)
Q Consensus       281 ~~~~~C~~C~~~f~~~~~l~~H-----~~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L  355 (400)
                      ++++.|.+|+..|.+...|..+     ....++..+|.|+.|++.|.+...|..|++.|  ..+|.|..|+++|.....|
T Consensus        38 ~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C~~CgK~F~~~~sL  115 (128)
T PHA00733         38 QKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVCPVCGKEFRNTDST  115 (128)
T ss_pred             hhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcC--CcCccCCCCCCccCCHHHH
Confidence            4556677777666665555443     12455667779999999999999999998876  3579999999999999999


Q ss_pred             HHHHhhcCC
Q psy4576         356 KVHMSCHTG  364 (400)
Q Consensus       356 ~~H~~~h~~  364 (400)
                      ..|+...++
T Consensus       116 ~~H~~~~h~  124 (128)
T PHA00733        116 LDHVCKKHN  124 (128)
T ss_pred             HHHHHHhcC
Confidence            999877654

>PHA02768 hypothetical protein; Provisional

Probab=99.00  E-value=1.4e-10  Score=72.70  Aligned_cols=44  Identities=23%  Similarity=0.398  Sum_probs=33.0

Q ss_pred             CeecccccccccChhhHHHHHhhcCCCCcccCCCCccccCCchHHH
Q psy4576         339 PHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYT  384 (400)
Q Consensus       339 ~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~  384 (400)
                      .|+|+.||+.|+..++|..|+++|+  ++|+|..|++.|...+.|+
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceecccceeE
Confidence            3677788888888888888887777  5777888887777766654

>KOG3993|consensus

Probab=98.99  E-value=4.9e-11  Score=105.07  Aligned_cols=177  Identities=19%  Similarity=0.314  Sum_probs=105.2

Q ss_pred             cccCcCccccCCHHHHHHHHHHcCCCCceecccccccccChhHHhhhHhhhcchhhHH--------H-------------
Q psy4576         217 LSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELE--------K-------------  275 (400)
Q Consensus       217 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~--------~-------------  275 (400)
                      |.|..|...|.+.-.|.+|.-.-....-|+|+.|++.|.-..+|..|.++|.+.....        +             
T Consensus       268 yiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~r  347 (500)
T KOG3993|consen  268 YICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAER  347 (500)
T ss_pred             HHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhccc
Confidence            5566666666666556555432222234666666666666666666655554432111        0             


Q ss_pred             -HhhhcCCccccccccccccChhhHHHHHhhhcCCCCC-----------------cccccccccCCHHHHHHHHHHhcC-
Q psy4576         276 -RTAILKREFICDVCGKSYVRKGALTEHHQREHQGKKP-----------------VCTICGKMLIDKRSLANHMNTHTG-  336 (400)
Q Consensus       276 -~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~-----------------~C~~C~~~f~~~~~l~~H~~~h~~-  336 (400)
                       -.......|.|..|++.|.....|+.|+..+|.....                 -|..|.-.+.....-..+...+.+ 
T Consensus       348 sg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~~~~g~~vl~~a~s  427 (500)
T KOG3993|consen  348 SGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSASDSHGDEVLYVAGS  427 (500)
T ss_pred             cCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccchhcccCcchhhcccccccccccccccccccccccceeeeecc
Confidence             0012234689999999999999999997565543221                 233333333322221112111111 


Q ss_pred             CCCeecccccccccChhhHHHHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCC
Q psy4576         337 LKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPG  393 (400)
Q Consensus       337 ~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~  393 (400)
                      ..-..|+.|+-.+..+..--.+.+.-..+..|.|.+|.-.|.+...|.+|+..-|+.
T Consensus       428 ael~~pp~~~~ppsss~~sgg~~rlg~~~q~f~~ky~~atfyss~~ltrhin~~Hps  484 (500)
T KOG3993|consen  428 AELELPPYDGSPPSSSGSSGGYGRLGIAEQGFTCKYCPATFYSSPGLTRHINKCHPS  484 (500)
T ss_pred             ccccCCCCCCCCcccCCCCCccccccchhhccccccchHhhhcCcchHhHhhhcChH
Confidence            122457778877777766666666666677799999999999999999999998874

>KOG3993|consensus

Probab=98.98  E-value=5e-11  Score=105.00  Aligned_cols=55  Identities=18%  Similarity=0.196  Sum_probs=47.4

Q ss_pred             cccccCcccccccChhHHHHHHhhhcCCCCcccccccccccCChHHHHHHhhhhcC
Q psy4576          91 DEERCRSCGLLSGSITQTYIHYLECKNRGKLYECSLCNESFENKKVLFRHLRGKHG  146 (400)
Q Consensus        91 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  146 (400)
                      ..|.|.+|...|.+...|.+| .-.......|+|+.|++.|+-..+|..|.+.|-.
T Consensus       266 GdyiCqLCK~kYeD~F~LAQH-rC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKP  320 (500)
T KOG3993|consen  266 GDYICQLCKEKYEDAFALAQH-RCPRIVHVEYRCPECDKVFSCPANLASHRRWHKP  320 (500)
T ss_pred             HHHHHHHHHHhhhhHHHHhhc-cCCeeEEeeecCCcccccccCchhhhhhhcccCC
Confidence            349999999999999999999 4444444569999999999999999999998864

>PHA02768 hypothetical protein; Provisional

Probab=98.84  E-value=1.4e-09  Score=68.14  Aligned_cols=44  Identities=23%  Similarity=0.436  Sum_probs=37.9

Q ss_pred             CCcccccccccCCHHHHHHHHHHhcCCCCeecccccccccChhhHH
Q psy4576         311 KPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLK  356 (400)
Q Consensus       311 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~  356 (400)
                      .|+|+.||+.|...+.|..|+++|+  ++|+|..|++.|...+.|.
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceecccceeE
Confidence            3689999999999999999999988  6899999999998777664

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.72  E-value=6.2e-09  Score=55.74  Aligned_cols=24  Identities=42%  Similarity=0.834  Sum_probs=12.2

Q ss_pred             HHHHHhhcCCCCcccCCCCccccC
Q psy4576         355 LKVHMSCHTGETSHTCHLCPQKFR  378 (400)
Q Consensus       355 L~~H~~~h~~~~~~~C~~C~~~f~  378 (400)
                      |.+|+++|++++||.|++|+++|.
T Consensus         2 l~~H~~~H~~~k~~~C~~C~k~F~   25 (26)
T PF13465_consen    2 LRRHMRTHTGEKPYKCPYCGKSFS   25 (26)
T ss_dssp             HHHHHHHHSSSSSEEESSSSEEES
T ss_pred             HHHHhhhcCCCCCCCCCCCcCeeC
Confidence            445555555555555555555543

...

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.67  E-value=1.6e-08  Score=54.11  Aligned_cols=26  Identities=54%  Similarity=0.985  Sum_probs=23.9

Q ss_pred             HHHHHHHHhcCCCCeecccccccccC
Q psy4576         326 SLANHMNTHTGLKPHCCEICGRSYST  351 (400)
Q Consensus       326 ~l~~H~~~h~~~~~~~C~~C~~~f~~  351 (400)
                      +|.+|+++|++++||.|+.|+++|.+
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            48899999999999999999999964

...

>PHA00616 hypothetical protein

Probab=98.52  E-value=3.3e-08  Score=58.87  Aligned_cols=33  Identities=15%  Similarity=0.195  Sum_probs=20.5

Q ss_pred             CeecccccccccChhhHHHHHhhcCCCCcccCC
Q psy4576         339 PHCCEICGRSYSTAAYLKVHMSCHTGETSHTCH  371 (400)
Q Consensus       339 ~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~  371 (400)
                      ||+|+.||+.|...+.|..|++.|+|++++.|+
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~   33 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLE   33 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCcccee
Confidence            456666666666666666666666666666554

>PHA00732 hypothetical protein

Probab=98.44  E-value=1.3e-07  Score=65.60  Aligned_cols=45  Identities=31%  Similarity=0.606  Sum_probs=22.9

Q ss_pred             CcccccccccCCHHHHHHHHHH-hcCCCCeecccccccccChhhHHHHHhhc
Q psy4576         312 PVCTICGKMLIDKRSLANHMNT-HTGLKPHCCEICGRSYSTAAYLKVHMSCH  362 (400)
Q Consensus       312 ~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~C~~~f~~~~~L~~H~~~h  362 (400)
                      |.|+.|++.|.+...|..|++. |.   ++.|+.|+++|.   .|..|++++
T Consensus         2 y~C~~Cgk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~---~l~~H~~~~   47 (79)
T PHA00732          2 FKCPICGFTTVTLFALKQHARRNHT---LTKCPVCNKSYR---RLNQHFYSQ   47 (79)
T ss_pred             ccCCCCCCccCCHHHHHHHhhcccC---CCccCCCCCEeC---Chhhhhccc
Confidence            3455555555555555555553 32   235555555554   355555433

>PHA00616 hypothetical protein

Probab=98.34  E-value=2.4e-07  Score=55.23  Aligned_cols=31  Identities=19%  Similarity=0.255  Sum_probs=29.1

Q ss_pred             cccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         367 SHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       367 ~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      ||+|+.||+.|..+++|.+|+++||+.+++.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~   31 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLT   31 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCccc
Confidence            6999999999999999999999999998764

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.26  E-value=1.5e-06  Score=55.95  Aligned_cols=52  Identities=25%  Similarity=0.411  Sum_probs=36.5

Q ss_pred             ccccCcccccccChhHHHHHHhhhcCCC-CcccccccccccCChHHHHHHhhhhcC
Q psy4576          92 EERCRSCGLLSGSITQTYIHYLECKNRG-KLYECSLCNESFENKKVLFRHLRGKHG  146 (400)
Q Consensus        92 ~~~C~~C~~~f~~~~~l~~H~~~~h~~~-~~~~C~~C~~~f~~~~~l~~H~~~~h~  146 (400)
                      .|.||+|++ ..+..+|..|+...|..+ +.+.|++|...+.  .+|..|+...|+
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H~   54 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQHR   54 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhcC
Confidence            367888888 455677888877777664 4678888877544  377777776663

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.25  E-value=2.2e-06  Score=55.26  Aligned_cols=50  Identities=30%  Similarity=0.538  Sum_probs=22.8

Q ss_pred             cccccccccccCHHHHHHhHhhcCCCC-CcccCCCCCCccCCHHHHHHHHHhhc
Q psy4576         158 CVCHYCNRTFDSKAKIQEHIISSHMHE-KLYQCDFCGSQQRTKCRFYYHLRDKH  210 (400)
Q Consensus       158 ~~C~~C~~~f~~~~~l~~H~~~~H~~~-~~~~C~~C~~~f~~~~~l~~H~~~~~  210 (400)
                      |.|++|++ ..+...|..|+...|..+ +.+.|++|...+.  .+|..|+...|
T Consensus         3 f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    3 FTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             cCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence            44555555 333445555554445433 2345555544322  24444444433

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PHA00732 hypothetical protein

Probab=98.12  E-value=2.1e-06  Score=59.65  Aligned_cols=45  Identities=31%  Similarity=0.580  Sum_probs=26.2

Q ss_pred             CeecccccccccChhhHHHHHhh-cCCCCcccCCCCccccCCchHHHHHHhh
Q psy4576         339 PHCCEICGRSYSTAAYLKVHMSC-HTGETSHTCHLCPQKFRQRSSYTLHYKT  389 (400)
Q Consensus       339 ~~~C~~C~~~f~~~~~L~~H~~~-h~~~~~~~C~~C~~~f~~~~~l~~H~~~  389 (400)
                      ||.|..|++.|.+.+.|..|++. |.   ++.|+.|++.|.   .|..|+++
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~---~l~~H~~~   46 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT---LTKCPVCNKSYR---RLNQHFYS   46 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC---CCccCCCCCEeC---Chhhhhcc
Confidence            45666666666666666666653 33   245666666665   35566544

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.92  E-value=5.5e-06  Score=42.98  Aligned_cols=22  Identities=23%  Similarity=0.631  Sum_probs=12.4

Q ss_pred             ccCCCCccccCCchHHHHHHhh
Q psy4576         368 HTCHLCPQKFRQRSSYTLHYKT  389 (400)
Q Consensus       368 ~~C~~C~~~f~~~~~l~~H~~~  389 (400)
                      |+|++|++.|.+...|..|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            4555555555555555555554

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.91  E-value=7.1e-06  Score=43.05  Aligned_cols=24  Identities=38%  Similarity=0.872  Sum_probs=16.3

Q ss_pred             ccCCCCccccCCchHHHHHHhhhC
Q psy4576         368 HTCHLCPQKFRQRSSYTLHYKTHH  391 (400)
Q Consensus       368 ~~C~~C~~~f~~~~~l~~H~~~hh  391 (400)
                      |.|++|++.|.+...|..|++++|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            567777777777777777777765

...

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.87  E-value=8.4e-06  Score=42.28  Aligned_cols=23  Identities=48%  Similarity=0.872  Sum_probs=16.4

Q ss_pred             eecccccccccChhhHHHHHhhc
Q psy4576         340 HCCEICGRSYSTAAYLKVHMSCH  362 (400)
Q Consensus       340 ~~C~~C~~~f~~~~~L~~H~~~h  362 (400)
                      |+|+.|++.|.+...|..|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            56777777777777777777653

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.78  E-value=1.2e-05  Score=43.58  Aligned_cols=26  Identities=23%  Similarity=0.502  Sum_probs=16.2

Q ss_pred             cccCCCCccccCCchHHHHHHhhhCC
Q psy4576         367 SHTCHLCPQKFRQRSSYTLHYKTHHP  392 (400)
Q Consensus       367 ~~~C~~C~~~f~~~~~l~~H~~~hh~  392 (400)
                      ||+|..|++.|.+...|..|++.|++
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~~   26 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHCS   26 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhcC
Confidence            45666666666666666666666554

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.74  E-value=1.7e-05  Score=58.90  Aligned_cols=22  Identities=27%  Similarity=0.718  Sum_probs=10.7

Q ss_pred             ccCCCCccccCCchHHHHHHhh
Q psy4576         368 HTCHLCPQKFRQRSSYTLHYKT  389 (400)
Q Consensus       368 ~~C~~C~~~f~~~~~l~~H~~~  389 (400)
                      +.|.+|++.|.+...|..|++.
T Consensus        51 ~~C~~C~~~f~s~~~l~~Hm~~   72 (100)
T PF12756_consen   51 FRCPYCNKTFRSREALQEHMRS   72 (100)
T ss_dssp             EEBSSSS-EESSHHHHHHHHHH
T ss_pred             CCCCccCCCCcCHHHHHHHHcC
Confidence            4555555555555555555543

>KOG1146|consensus

Probab=97.72  E-value=4.9e-06  Score=84.46  Aligned_cols=226  Identities=20%  Similarity=0.272  Sum_probs=143.6

Q ss_pred             ccccccccccCHHHHHHhHhhcCCCCCcccCCCCCCccCCHHHHHHHHHhhcCCCCCCcccCcCccccCCHHHHHHHHHH
Q psy4576         159 VCHYCNRTFDSKAKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHLAV  238 (400)
Q Consensus       159 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~  238 (400)
                      .|..|+..+.+...+..|+...|...+.|.|+.|+..|.....|..|||..|.+-..    .+|.. +.....+.+-...
T Consensus       438 e~~~~e~~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~----~~c~~-gq~~~~~arg~~~  512 (1406)
T KOG1146|consen  438 ELTKAEPLLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQS----AYCKA-GQNHPRLARGEVY  512 (1406)
T ss_pred             cccchhhhhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccch----hHhHh-ccccccccccccc
Confidence            466677778888888888878888889999999999999999999999998865432    22211 1111111111112


Q ss_pred             cCCCCceecccccccccChhHHhhhHhhhcchhhHHHHh--------------------------------hhcCCcccc
Q psy4576         239 HKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRT--------------------------------AILKREFIC  286 (400)
Q Consensus       239 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~--------------------------------~~~~~~~~C  286 (400)
                      -.+.++|.|..|...+....+|..|++..-....++...                                ......+.|
T Consensus       513 ~~~~~p~~C~~C~~stttng~LsihlqS~~h~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag~~~~ags~~pktkP~~~C  592 (1406)
T KOG1146|consen  513 RCPGKPYPCRACNYSTTTNGNLSIHLQSDLHRNELEEAEENAGEQVRLLPASVTSAVPEEAGLGPSAGSSGPKTKPSWRC  592 (1406)
T ss_pred             cCCCCcccceeeeeeeecchHHHHHHHHHhhHHHHHHHHhccccchhhhhhhhcccCcccccCCCCCCCCCCCCCCCcch
Confidence            234578999999999999999999986543222111100                                111234889


Q ss_pred             ccccccccChhhHHHHHhhhcCCCCC-cccccccccCCHHHHHHHHHHh-c-----------------------------
Q psy4576         287 DVCGKSYVRKGALTEHHQREHQGKKP-VCTICGKMLIDKRSLANHMNTH-T-----------------------------  335 (400)
Q Consensus       287 ~~C~~~f~~~~~l~~H~~~~h~~~~~-~C~~C~~~f~~~~~l~~H~~~h-~-----------------------------  335 (400)
                      ..|++...-..+|..|+...+....+ .+..++-.+.....+..+-+.+ +                             
T Consensus       593 ~vc~yetniarnlrihmtss~~s~~p~~~Lq~~it~~l~~~~~~~~~lp~tps~~~~s~~~l~qkl~l~~~~~e~~a~~a  672 (1406)
T KOG1146|consen  593 EVCSYETNIARNLRIHMTASPSSSPPSLVLQQNITSSLASLLGGQGRLPFTPSSPPSSDYELSQKLELPDLSLEVAAKPA  672 (1406)
T ss_pred             hhhcchhhhhhccccccccCCCCCChHHHhhhcchhhccccccCcCCCCCCCCCCccccchhhhhhcccccccccccccc
Confidence            99999999999999997655543332 3333333333333222222222 0                             


Q ss_pred             ----------------------------------------------------------CCCCeeccccccc-ccChhhHH
Q psy4576         336 ----------------------------------------------------------GLKPHCCEICGRS-YSTAAYLK  356 (400)
Q Consensus       336 ----------------------------------------------------------~~~~~~C~~C~~~-f~~~~~L~  356 (400)
                                                                                ..|.|.|-.|+.- ..+...|.
T Consensus       673 s~~~~~~~~~~~~~~~aPt~s~~g~~~~~~~~~~~~~~~~~~~aa~~l~~a~~~~~sps~k~~~civcd~~st~~l~~l~  752 (1406)
T KOG1146|consen  673 SGLDGQLQLIRADPFLAPTGSEVGGGESLSPRDKLLRLTILPEAAMILGRAYMQDNSPSLKVFDCIVCDVFSTDRLDQLW  752 (1406)
T ss_pred             ccccchhhhccCCcccCCCCCCCCCCCCCCcccccCcccccHHHHhhhhhcccCCCCHHHHHHHHhhhhhhhhhhHHHHh
Confidence                                                                      0144889999854 34455666


Q ss_pred             HHHhhc------CCCCcccCCCCccccCCchHHHHHHhh
Q psy4576         357 VHMSCH------TGETSHTCHLCPQKFRQRSSYTLHYKT  389 (400)
Q Consensus       357 ~H~~~h------~~~~~~~C~~C~~~f~~~~~l~~H~~~  389 (400)
                      .|..+-      .....|.|.+|.+....+.++..|.++
T Consensus       753 ~h~~~~rs~ke~v~g~~~~c~l~~y~t~~kanfqlh~Kt  791 (1406)
T KOG1146|consen  753 FHNTRERSRKEQVPGDVPSCKLKPYATNTKANFQLHNKT  791 (1406)
T ss_pred             hcchhhhhhhhcccCCCCcceecccccccchhhhhhccc
Confidence            675322      122459999999999999999998765

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.65  E-value=2.9e-05  Score=57.60  Aligned_cols=72  Identities=24%  Similarity=0.491  Sum_probs=16.1

Q ss_pred             cccccccccChhhHHHHHhhhcCCCCCcccccccccCCHHHHHHHHHHhcCCCCeecccccccccChhhHHHHHhhc
Q psy4576         286 CDVCGKSYVRKGALTEHHQREHQGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCH  362 (400)
Q Consensus       286 C~~C~~~f~~~~~l~~H~~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h  362 (400)
                      |..|+..|.+...|..|+...|.-...    ....+.....+..+++.-.. ..+.|.+|++.|.+...|..|++.+
T Consensus         2 C~~C~~~f~~~~~l~~H~~~~H~~~~~----~~~~l~~~~~~~~~~~~~~~-~~~~C~~C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen    2 CLFCDESFSSVDDLLQHMKKKHGFDIP----DQKYLVDPNRLLNYLRKKVK-ESFRCPYCNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             ----------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHT
T ss_pred             ccccccccccccccccccccccccccc----cccccccccccccccccccC-CCCCCCccCCCCcCHHHHHHHHcCc
Confidence            555555565555566665555543222    11111123333333332211 2567777777777777777777653

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.55  E-value=0.00013  Score=63.52  Aligned_cols=131  Identities=24%  Similarity=0.493  Sum_probs=93.6

Q ss_pred             cccccc--cccccCChHHHHHHhhhhcCCcccccCCCCcccccccc---ccc------cCHHHHHHhHhhcCCCC---Cc
Q psy4576         121 LYECSL--CNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCN---RTF------DSKAKIQEHIISSHMHE---KL  186 (400)
Q Consensus       121 ~~~C~~--C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~---~~f------~~~~~l~~H~~~~H~~~---~~  186 (400)
                      .|.|+.  |.........|..|++..|+..          .|.+|-   +.|      -+...|+.|....-.++   .-
T Consensus       151 ~F~CP~skc~~~C~~~k~lk~H~K~~H~~~----------~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGH  220 (493)
T COG5236         151 SFKCPKSKCHRRCGSLKELKKHYKAQHGFV----------LCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGH  220 (493)
T ss_pred             HhcCCchhhhhhhhhHHHHHHHHHhhcCcE----------EhHhhhcCcccCccceeeeecccccccccCCccccCcCCC
Confidence            377875  7777777888888988877643          566663   333      34567788863222221   12


Q ss_pred             ccCCCCCCccCCHHHHHHHHHhhcCCCCCCcccCcCcc-------ccCCHHHHHHHHHHcCCCCceeccc--cc----cc
Q psy4576         187 YQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSCEFCSR-------IFTKKELLRSHLAVHKIGKNYQCYY--CR----KT  253 (400)
Q Consensus       187 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~C~~C~~-------~f~~~~~l~~H~~~h~~~~~~~C~~--C~----~~  253 (400)
                      =.|.+|...|.+...|..|++..|.      .|.+|++       -|.+..+|..|.+..+    |.|..  |-    ..
T Consensus       221 P~C~FC~~~FYdDDEL~~HcR~~HE------~ChICD~v~p~~~QYFK~Y~~Le~HF~~~h----y~ct~qtc~~~k~~v  290 (493)
T COG5236         221 PLCIFCKIYFYDDDELRRHCRLRHE------ACHICDMVGPIRYQYFKSYEDLEAHFRNAH----YCCTFQTCRVGKCYV  290 (493)
T ss_pred             chhhhccceecChHHHHHHHHhhhh------hhhhhhccCccchhhhhCHHHHHHHhhcCc----eEEEEEEEecCcEEE
Confidence            3699999999999999999998885      7888875       4888888999987544    55544  32    47


Q ss_pred             ccChhHHhhhHhhhcchh
Q psy4576         254 YCHKPNLTNHIQNVHLKS  271 (400)
Q Consensus       254 f~~~~~l~~H~~~~h~~~  271 (400)
                      |.....|..|+...|+..
T Consensus       291 f~~~~el~~h~~~~h~~~  308 (493)
T COG5236         291 FPYHTELLEHLTRFHKVN  308 (493)
T ss_pred             eccHHHHHHHHHHHhhcc
Confidence            889999999998888653

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.54  E-value=6.1e-05  Score=40.73  Aligned_cols=26  Identities=31%  Similarity=0.769  Sum_probs=21.8

Q ss_pred             CeecccccccccChhhHHHHHhhcCC
Q psy4576         339 PHCCEICGRSYSTAAYLKVHMSCHTG  364 (400)
Q Consensus       339 ~~~C~~C~~~f~~~~~L~~H~~~h~~  364 (400)
                      ||+|..|++.|.+...|..|++.|.+
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~~   26 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHCS   26 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhcC
Confidence            58889999999999999999887753

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.50  E-value=7e-05  Score=39.12  Aligned_cols=23  Identities=35%  Similarity=0.895  Sum_probs=10.0

Q ss_pred             ccccccccccCChHHHHHHhhhh
Q psy4576         122 YECSLCNESFENKKVLFRHLRGK  144 (400)
Q Consensus       122 ~~C~~C~~~f~~~~~l~~H~~~~  144 (400)
                      |.|++|++.|.+...|..|+..+
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            34444555555544444444443

...

>KOG1146|consensus

Probab=97.46  E-value=3.7e-05  Score=78.33  Aligned_cols=84  Identities=18%  Similarity=0.202  Sum_probs=63.2

Q ss_pred             ccCcccccccChhHHHHHHhhhcCCCCcccccccccccCChHHHHHHhhhhcCCccc-----------------ccCCCC
Q psy4576          94 RCRSCGLLSGSITQTYIHYLECKNRGKLYECSLCNESFENKKVLFRHLRGKHGMKIK-----------------LSRHKT  156 (400)
Q Consensus        94 ~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~-----------------~~~~~~  156 (400)
                      .|.-|.-.+.+...+.-|+...+...+.|+|+.|++.|+....|..||+..|.+...                 ......
T Consensus       438 e~~~~e~~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~  517 (1406)
T KOG1146|consen  438 ELTKAEPLLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGK  517 (1406)
T ss_pred             cccchhhhhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCC
Confidence            566677777777777777777777788899999999999999999999986654311                 122256


Q ss_pred             ccccccccccccCHHHHHHhH
Q psy4576         157 KCVCHYCNRTFDSKAKIQEHI  177 (400)
Q Consensus       157 ~~~C~~C~~~f~~~~~l~~H~  177 (400)
                      +|.|..|...+.....|.+|+
T Consensus       518 p~~C~~C~~stttng~Lsihl  538 (1406)
T KOG1146|consen  518 PYPCRACNYSTTTNGNLSIHL  538 (1406)
T ss_pred             cccceeeeeeeecchHHHHHH
Confidence            677888888888888888877

>KOG2231|consensus

Probab=97.45  E-value=0.00042  Score=67.09  Aligned_cols=47  Identities=28%  Similarity=0.596  Sum_probs=25.8

Q ss_pred             cCCCCCCccCCHHHHHHHHHhhcCCCCCCcccCcCc------cccCCHHHHHHHHHHcC
Q psy4576         188 QCDFCGSQQRTKCRFYYHLRDKHLSKPANLSCEFCS------RIFTKKELLRSHLAVHK  240 (400)
Q Consensus       188 ~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~C~~C~------~~f~~~~~l~~H~~~h~  240 (400)
                      .|..|...|-....|.+|++..|      |.|..|.      ..|.....|..|.+..|
T Consensus       184 ~C~~C~~~fld~~el~rH~~~~h------~~chfC~~~~~~neyy~~~~dLe~HfR~~H  236 (669)
T KOG2231|consen  184 LCKFCHERFLDDDELYRHLRFDH------EFCHFCDYKTGQNEYYNDYDDLEEHFRKGH  236 (669)
T ss_pred             cchhhhhhhccHHHHHHhhccce------eheeecCcccccchhcccchHHHHHhhhcC
Confidence            45566666666666666665555      2444442      34555555666655544

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=97.40  E-value=8e-05  Score=38.96  Aligned_cols=24  Identities=33%  Similarity=0.647  Sum_probs=16.7

Q ss_pred             ccCCCCccccCCchHHHHHHhhhCC
Q psy4576         368 HTCHLCPQKFRQRSSYTLHYKTHHP  392 (400)
Q Consensus       368 ~~C~~C~~~f~~~~~l~~H~~~hh~  392 (400)
                      |+|+.|++... ...|.+|++.+||
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H~   24 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHHP   24 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHHS
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhCc
Confidence            67788887777 7778888877765

>KOG2231|consensus

Probab=97.39  E-value=0.0004  Score=67.21  Aligned_cols=125  Identities=19%  Similarity=0.356  Sum_probs=70.4

Q ss_pred             ccCCCCCCccCCHHHHHHHHHhhcCCCCCCcccCcCccccCCHHHHHHHHHHcCCCCceeccccc---------ccccCh
Q psy4576         187 YQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCR---------KTYCHK  257 (400)
Q Consensus       187 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~---------~~f~~~  257 (400)
                      +.|.+|+..|.-..              ..-.|..| ..|.+...|+.|+..-+  +.+.|.+|-         ....+.
T Consensus       100 ~~C~~C~~~~~~~~--------------~~~~~~~c-~~~~s~~~Lk~H~~~~H--~~~~c~lC~~~~kif~~e~k~Yt~  162 (669)
T KOG2231|consen  100 HSCHICDRRFRALY--------------NKKECLHC-TEFKSVENLKNHMRDQH--KLHLCSLCLQNLKIFINERKLYTR  162 (669)
T ss_pred             hhcCccccchhhhc--------------ccCCCccc-cchhHHHHHHHHHHHhh--hhhccccccccceeeeeeeehehH
Confidence            68888887764210              11278888 88888899999985433  234455542         233345


Q ss_pred             hHHhhhHhhhcchhhHHHHhhhcCCccccccccccccChhhHHHHHhhhcCCCCCcc---cccccccCCHHHHHHHHHHh
Q psy4576         258 PNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGALTEHHQREHQGKKPVC---TICGKMLIDKRSLANHMNTH  334 (400)
Q Consensus       258 ~~l~~H~~~~h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~C---~~C~~~f~~~~~l~~H~~~h  334 (400)
                      ..|..|++.--...    ....+  --.|..|...|.....|.+|+...|.-..+ |   +.++.-|.....|..|.+.+
T Consensus       163 ~el~~h~~~gd~d~----~s~rG--hp~C~~C~~~fld~~el~rH~~~~h~~chf-C~~~~~~neyy~~~~dLe~HfR~~  235 (669)
T KOG2231|consen  163 AELNLHLMFGDPDD----ESCRG--HPLCKFCHERFLDDDELYRHLRFDHEFCHF-CDYKTGQNEYYNDYDDLEEHFRKG  235 (669)
T ss_pred             HHHHHHHhcCCCcc----ccccC--CccchhhhhhhccHHHHHHhhccceeheee-cCcccccchhcccchHHHHHhhhc
Confidence            56667764332211    11111  235777777777777777776554432221 2   22344566666777776654


Q ss_pred             c
Q psy4576         335 T  335 (400)
Q Consensus       335 ~  335 (400)
                      +
T Consensus       236 H  236 (669)
T KOG2231|consen  236 H  236 (669)
T ss_pred             C
Confidence            4

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.36  E-value=5e-05  Score=65.26  Aligned_cols=23  Identities=13%  Similarity=0.475  Sum_probs=15.7

Q ss_pred             CCccccccccccccCHHHHHHhH
Q psy4576         155 KTKCVCHYCNRTFDSKAKIQEHI  177 (400)
Q Consensus       155 ~~~~~C~~C~~~f~~~~~l~~H~  177 (400)
                      .++|+|++|++.|.+...|+-|.
T Consensus       396 ~KPYrCevC~KRYKNlNGLKYHr  418 (423)
T COG5189         396 DKPYRCEVCDKRYKNLNGLKYHR  418 (423)
T ss_pred             CCceeccccchhhccCccceecc
Confidence            45667777777777777777664

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.11  E-value=0.00012  Score=63.00  Aligned_cols=62  Identities=29%  Similarity=0.600  Sum_probs=46.3

Q ss_pred             CCceeccc--ccccccChhHHhhhHhhhcchhhHH--------HHhhhcCCccccccccccccChhhHHHHH
Q psy4576         242 GKNYQCYY--CRKTYCHKPNLTNHIQNVHLKSELE--------KRTAILKREFICDVCGKSYVRKGALTEHH  303 (400)
Q Consensus       242 ~~~~~C~~--C~~~f~~~~~l~~H~~~~h~~~~~~--------~~~~~~~~~~~C~~C~~~f~~~~~l~~H~  303 (400)
                      ++||+|+.  |.+.|.+...|+.|+..-|......        .......+||+|++|++.+.+...|+.|+
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr  418 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHR  418 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceecc
Confidence            58999998  9999999999999997766332111        11123457888888888888888888874

>KOG2482|consensus

Probab=97.08  E-value=0.0017  Score=56.76  Aligned_cols=61  Identities=28%  Similarity=0.573  Sum_probs=43.1

Q ss_pred             CCccccccccccc-CChHHHHHHhhhhcCCcccccCC--------------CCccccccccccccCHHHHHHhHhh
Q psy4576         119 GKLYECSLCNESF-ENKKVLFRHLRGKHGMKIKLSRH--------------KTKCVCHYCNRTFDSKAKIQEHIIS  179 (400)
Q Consensus       119 ~~~~~C~~C~~~f-~~~~~l~~H~~~~h~~~~~~~~~--------------~~~~~C~~C~~~f~~~~~l~~H~~~  179 (400)
                      ....+|-+|...+ .+++.+..|+...|+....+...              -..+.|-+|.+.|.++..|+.||+.
T Consensus       142 ~fslqClFCn~e~lgnRs~~l~Hlf~~H~lniGlpDniVyvnelLehLkekL~r~~CLyCekifrdkntLkeHMrk  217 (423)
T KOG2482|consen  142 IFSLQCLFCNNEGLGNRSEILEHLFHVHGLNIGLPDNIVYVNELLEHLKEKLERLRCLYCEKIFRDKNTLKEHMRK  217 (423)
T ss_pred             eeeeEEEEecchhcccHHHHHHHHHHHhhhccCCCcceeeHHHHHHHHHHHHhhheeeeeccccCCcHHHHHHHHh
Confidence            3456788887655 67778888888888755433222              3345788888888888888888843

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.03  E-value=0.00063  Score=41.57  Aligned_cols=32  Identities=25%  Similarity=0.395  Sum_probs=18.9

Q ss_pred             CCCcccCCCCccccCCchHHHHHHhhhCCCCC
Q psy4576         364 GETSHTCHLCPQKFRQRSSYTLHYKTHHPGVI  395 (400)
Q Consensus       364 ~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~  395 (400)
                      .+.|-.|++|+..+.+..+|.+|+...|..+|
T Consensus        21 S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   21 SEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             TS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             cCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            34567777777777777777777777777665

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.03  E-value=0.00066  Score=59.21  Aligned_cols=72  Identities=21%  Similarity=0.477  Sum_probs=39.3

Q ss_pred             cccccccccCCHHHHHHHHHHhcCCCCeecccccc-------cccChhhHHHHHhhcCCCCcccCCC--Cc----cccCC
Q psy4576         313 VCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGR-------SYSTAAYLKVHMSCHTGETSHTCHL--CP----QKFRQ  379 (400)
Q Consensus       313 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~-------~f~~~~~L~~H~~~h~~~~~~~C~~--C~----~~f~~  379 (400)
                      .|..|...|.+...|..|++..+.    +|.+|++       -|.+..+|..|.+.-+    |.|.+  |-    +.|..
T Consensus       222 ~C~FC~~~FYdDDEL~~HcR~~HE----~ChICD~v~p~~~QYFK~Y~~Le~HF~~~h----y~ct~qtc~~~k~~vf~~  293 (493)
T COG5236         222 LCIFCKIYFYDDDELRRHCRLRHE----ACHICDMVGPIRYQYFKSYEDLEAHFRNAH----YCCTFQTCRVGKCYVFPY  293 (493)
T ss_pred             hhhhccceecChHHHHHHHHhhhh----hhhhhhccCccchhhhhCHHHHHHHhhcCc----eEEEEEEEecCcEEEecc
Confidence            566666666666666666654332    3555543       3555556666654322    44432  32    45666


Q ss_pred             chHHHHHHhhhCC
Q psy4576         380 RSSYTLHYKTHHP  392 (400)
Q Consensus       380 ~~~l~~H~~~hh~  392 (400)
                      ...|..|+...|+
T Consensus       294 ~~el~~h~~~~h~  306 (493)
T COG5236         294 HTELLEHLTRFHK  306 (493)
T ss_pred             HHHHHHHHHHHhh
Confidence            6666666666554

>smart00355 ZnF_C2H2 zinc finger

Probab=96.87  E-value=0.00078  Score=35.69  Aligned_cols=23  Identities=30%  Similarity=0.654  Sum_probs=17.6

Q ss_pred             ccCCCCccccCCchHHHHHHhhh
Q psy4576         368 HTCHLCPQKFRQRSSYTLHYKTH  390 (400)
Q Consensus       368 ~~C~~C~~~f~~~~~l~~H~~~h  390 (400)
                      |.|+.|++.|.....|..|++.|
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHh
Confidence            56788888888888888887754

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=96.82  E-value=0.0008  Score=35.07  Aligned_cols=23  Identities=43%  Similarity=0.778  Sum_probs=13.2

Q ss_pred             ccccccccccCChHHHHHHhhhhc
Q psy4576         122 YECSLCNESFENKKVLFRHLRGKH  145 (400)
Q Consensus       122 ~~C~~C~~~f~~~~~l~~H~~~~h  145 (400)
                      |+|+.|++... ...|..|++.+|
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            45666666665 666666666655

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.77  E-value=0.0013  Score=40.27  Aligned_cols=30  Identities=23%  Similarity=0.486  Sum_probs=13.0

Q ss_pred             CCCeecccccccccChhhHHHHHhhcCCCC
Q psy4576         337 LKPHCCEICGRSYSTAAYLKVHMSCHTGET  366 (400)
Q Consensus       337 ~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~  366 (400)
                      +.|-.|++|+..+.+..+|.+|+.++++.+
T Consensus        22 ~~PatCP~C~a~~~~srnLrRHle~~H~~k   51 (54)
T PF09237_consen   22 EQPATCPICGAVIRQSRNLRRHLEIRHFKK   51 (54)
T ss_dssp             S--EE-TTT--EESSHHHHHHHHHHHTTTS
T ss_pred             CCCCCCCcchhhccchhhHHHHHHHHhccc
Confidence            344555555555555555555555544443

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>smart00355 ZnF_C2H2 zinc finger

Probab=96.76  E-value=0.0011  Score=35.12  Aligned_cols=23  Identities=35%  Similarity=0.722  Sum_probs=14.5

Q ss_pred             eecccccccccChhhHHHHHhhc
Q psy4576         340 HCCEICGRSYSTAAYLKVHMSCH  362 (400)
Q Consensus       340 ~~C~~C~~~f~~~~~L~~H~~~h  362 (400)
                      |.|+.|++.|.....|..|++.|
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHh
Confidence            45666666666666666666654

>KOG2482|consensus

Probab=96.69  E-value=0.0076  Score=52.79  Aligned_cols=50  Identities=28%  Similarity=0.433  Sum_probs=36.8

Q ss_pred             cccccccccccChhhHHHHHhhhcC---------------------------CCCCcccccccccCCHHHHHHHHHH
Q psy4576         284 FICDVCGKSYVRKGALTEHHQREHQ---------------------------GKKPVCTICGKMLIDKRSLANHMNT  333 (400)
Q Consensus       284 ~~C~~C~~~f~~~~~l~~H~~~~h~---------------------------~~~~~C~~C~~~f~~~~~l~~H~~~  333 (400)
                      ..|-.|.....+...|..|+...|.                           .....|-.|...|.....|..||.-
T Consensus       280 v~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm~e  356 (423)
T KOG2482|consen  280 VVCLFCTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHMVE  356 (423)
T ss_pred             eEEEeeccchhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchhhhhccc
Confidence            4777777777777777777766662                           1223788899999999999999864

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.63  E-value=0.0011  Score=34.95  Aligned_cols=22  Identities=23%  Similarity=0.664  Sum_probs=11.7

Q ss_pred             ccCCCCccccCCchHHHHHHhh
Q psy4576         368 HTCHLCPQKFRQRSSYTLHYKT  389 (400)
Q Consensus       368 ~~C~~C~~~f~~~~~l~~H~~~  389 (400)
                      |.|.+|++.|.+...|..|++.
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTT
T ss_pred             CCCCCCCCCcCCHHHHHHHHCc
Confidence            3455555555555555555543

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.61  E-value=0.0014  Score=34.53  Aligned_cols=23  Identities=30%  Similarity=0.804  Sum_probs=18.4

Q ss_pred             eecccccccccChhhHHHHHhhc
Q psy4576         340 HCCEICGRSYSTAAYLKVHMSCH  362 (400)
Q Consensus       340 ~~C~~C~~~f~~~~~L~~H~~~h  362 (400)
                      |.|.+|++.|.+...|..|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            67888888888888888888653

>PRK04860 hypothetical protein; Provisional

Probab=96.55  E-value=0.0011  Score=53.05  Aligned_cols=38  Identities=21%  Similarity=0.494  Sum_probs=27.7

Q ss_pred             CeecccccccccChhhHHHHHhhcCCCCcccCCCCccccCCc
Q psy4576         339 PHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQR  380 (400)
Q Consensus       339 ~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~  380 (400)
                      +|.|. |+.   ....+.+|.++|.++++|.|..|+..|...
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~  156 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFK  156 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEe
Confidence            57777 776   556677788888877778888887776543

>KOG2785|consensus

Probab=96.44  E-value=0.0084  Score=53.61  Aligned_cols=166  Identities=18%  Similarity=0.278  Sum_probs=98.8

Q ss_pred             CcccCcCccccCCHHHHHHHHHHcCCCCceecccccccccChhHHhhhHhhhcchh-------------hHHHHhhhcCC
Q psy4576         216 NLSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKS-------------ELEKRTAILKR  282 (400)
Q Consensus       216 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~-------------~~~~~~~~~~~  282 (400)
                      .|+|.-|...|.+....+.|+++--               ...+|++-+....+..             ...........
T Consensus         3 ~ftC~tC~v~F~~ad~Qr~HyKSdW---------------HRYNLKRkVA~lPPItaE~F~~k~~s~~~~~~~~~e~~~~   67 (390)
T KOG2785|consen    3 GFTCNTCNVEFDDADEQRAHYKSDW---------------HRYNLKRKVASLPPITAEEFNEKVLSDDSEKEENLEEAES   67 (390)
T ss_pred             cceeeceeeeeccHHHHHHHhhhhH---------------HHhhHHhHhhcCCCcCHHHHhHHHhhhhhhhhhhhhhccc
Confidence            3688888888888888888876421               0112222222211111             01111244566


Q ss_pred             ccccccccccccChhhHHHHHhhhcCC-----------------CCCc-------------ccccccccCCHHHHHHHHH
Q psy4576         283 EFICDVCGKSYVRKGALTEHHQREHQG-----------------KKPV-------------CTICGKMLIDKRSLANHMN  332 (400)
Q Consensus       283 ~~~C~~C~~~f~~~~~l~~H~~~~h~~-----------------~~~~-------------C~~C~~~f~~~~~l~~H~~  332 (400)
                      ++.|..|.+.|.+......|+...-..                 ....             +..+............+..
T Consensus        68 ~~~c~~c~k~~~s~~a~~~hl~Sk~h~~~~~~~~r~~e~d~a~~~q~~~~~p~~l~~~~e~e~~~~E~~~~~d~~~e~~~  147 (390)
T KOG2785|consen   68 VVYCEACNKSFASPKAHENHLKSKKHVENLSNHQRSEEGDSAKISQLPSRRPSNLQNKGESELKWYEVDSDEDSSEEEEE  147 (390)
T ss_pred             ceehHHhhccccChhhHHHHHHHhhcchhhhhhhccccccchhhhhccccCccccccCCCcccchhhcccccccchhhcc
Confidence            788999999999888888886432110                 0011             2333333333222222211


Q ss_pred             H------------hcCCCCeecccccccccChhhHHHHHhhcCCC-----------------------CcccCCCCc---
Q psy4576         333 T------------HTGLKPHCCEICGRSYSTAAYLKVHMSCHTGE-----------------------TSHTCHLCP---  374 (400)
Q Consensus       333 ~------------h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~-----------------------~~~~C~~C~---  374 (400)
                      .            -...-|-.|-.|++.+.+...-..||..+||-                       .-|.|-.|+   
T Consensus       148 dd~~Edi~~d~~~e~e~~Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~  227 (390)
T KOG2785|consen  148 DDEEEDIEEDGDDEDELIPTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELG  227 (390)
T ss_pred             CcchhhhhhccchhcccCCcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEecccc
Confidence            1            11124578999999999999999999988762                       247899999   


Q ss_pred             cccCCchHHHHHHhh-hCCCCCC
Q psy4576         375 QKFRQRSSYTLHYKT-HHPGVIP  396 (400)
Q Consensus       375 ~~f~~~~~l~~H~~~-hh~~~~~  396 (400)
                      +.|.+....+.||.. -|-..++
T Consensus       228 ~~f~sleavr~HM~~K~HCkl~y  250 (390)
T KOG2785|consen  228 RPFSSLEAVRAHMRDKGHCKLPY  250 (390)
T ss_pred             CcccccHHHHHHHhhccCcccCC
Confidence            999999999999965 3444443

>KOG2785|consensus

Probab=96.20  E-value=0.028  Score=50.38  Aligned_cols=49  Identities=24%  Similarity=0.462  Sum_probs=40.6

Q ss_pred             cccccccccCCHHHHHHHHHHhcCC-----------------------CCeeccccc---ccccChhhHHHHHhh
Q psy4576         313 VCTICGKMLIDKRSLANHMNTHTGL-----------------------KPHCCEICG---RSYSTAAYLKVHMSC  361 (400)
Q Consensus       313 ~C~~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~C~---~~f~~~~~L~~H~~~  361 (400)
                      .|-.|++.+.+...-..||..++|-                       .-|.|-.|+   +.|.+..+.+.||..
T Consensus       168 ~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~  242 (390)
T KOG2785|consen  168 DCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRD  242 (390)
T ss_pred             ceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHhh
Confidence            6888888888888888888877652                       337899999   999999999999954

>KOG4173|consensus

Probab=95.75  E-value=0.0042  Score=50.24  Aligned_cols=49  Identities=22%  Similarity=0.472  Sum_probs=24.4

Q ss_pred             cccCc--ccccccChhHHHHHHhhhcCCCCcccccccccccCChHHHHHHhhhhc
Q psy4576          93 ERCRS--CGLLSGSITQTYIHYLECKNRGKLYECSLCNESFENKKVLFRHLRGKH  145 (400)
Q Consensus        93 ~~C~~--C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h  145 (400)
                      |.|+.  |..+|.+...+..|+...|..    .|.+|.+.|.+...|..|+..-|
T Consensus        80 ~~cqvagc~~~~d~lD~~E~hY~~~h~~----sCs~C~r~~Pt~hLLd~HI~E~H  130 (253)
T KOG4173|consen   80 FACQVAGCCQVFDALDDYEHHYHTLHGN----SCSFCKRAFPTGHLLDAHILEWH  130 (253)
T ss_pred             ccccccchHHHHhhhhhHHHhhhhcccc----hhHHHHHhCCchhhhhHHHHHHH
Confidence            34544  555555555555554444432    45555555555555555544433

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=95.75  E-value=0.0042  Score=33.35  Aligned_cols=22  Identities=32%  Similarity=0.730  Sum_probs=14.1

Q ss_pred             eecccccccccChhhHHHHHhh
Q psy4576         340 HCCEICGRSYSTAAYLKVHMSC  361 (400)
Q Consensus       340 ~~C~~C~~~f~~~~~L~~H~~~  361 (400)
                      |.|..|++.|.+...|..|++.
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            5566666666666666666643

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=95.61  E-value=0.0058  Score=32.82  Aligned_cols=21  Identities=24%  Similarity=0.770  Sum_probs=11.4

Q ss_pred             ccccccccccCChHHHHHHhh
Q psy4576         122 YECSLCNESFENKKVLFRHLR  142 (400)
Q Consensus       122 ~~C~~C~~~f~~~~~l~~H~~  142 (400)
                      |.|..|++.|.+...|..|++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~   22 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMK   22 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTT
T ss_pred             CCcccCCCCcCCHHHHHHHHc
Confidence            445555555555555555554

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PRK04860 hypothetical protein; Provisional

Probab=95.36  E-value=0.0071  Score=48.42  Aligned_cols=38  Identities=18%  Similarity=0.398  Sum_probs=31.4

Q ss_pred             CCcccccccccCCHHHHHHHHHHhcCCCCeecccccccccCh
Q psy4576         311 KPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTA  352 (400)
Q Consensus       311 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~  352 (400)
                      +|.|. |+.   ....+.+|.++|+++++|.|..|+..|...
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~  156 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFK  156 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEe
Confidence            45887 887   666788999999999999999999888654

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=94.73  E-value=0.025  Score=29.64  Aligned_cols=19  Identities=32%  Similarity=0.690  Sum_probs=11.1

Q ss_pred             cCCCCccccCCchHHHHHHh
Q psy4576         369 TCHLCPQKFRQRSSYTLHYK  388 (400)
Q Consensus       369 ~C~~C~~~f~~~~~l~~H~~  388 (400)
                      .|++||+.| ..+.|.+|++
T Consensus         4 ~C~~CgR~F-~~~~l~~H~~   22 (25)
T PF13913_consen    4 PCPICGRKF-NPDRLEKHEK   22 (25)
T ss_pred             cCCCCCCEE-CHHHHHHHHH
Confidence            466666666 4555666654

>KOG4173|consensus

Probab=94.66  E-value=0.013  Score=47.47  Aligned_cols=81  Identities=25%  Similarity=0.542  Sum_probs=70.1

Q ss_pred             Ccccccc--cccccCChHHHHHHhhhhcCCcccccCCCCccccccccccccCHHHHHHhHhhcC---------CCCCccc
Q psy4576         120 KLYECSL--CNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTFDSKAKIQEHIISSH---------MHEKLYQ  188 (400)
Q Consensus       120 ~~~~C~~--C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H---------~~~~~~~  188 (400)
                      ..|.|.+  |-..|.+......|+..-|+.           .|..|.+.|.+...|..|+...|         .|...|+
T Consensus        78 ~~~~cqvagc~~~~d~lD~~E~hY~~~h~~-----------sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~  146 (253)
T KOG4173|consen   78 PAFACQVAGCCQVFDALDDYEHHYHTLHGN-----------SCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQ  146 (253)
T ss_pred             ccccccccchHHHHhhhhhHHHhhhhcccc-----------hhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHH
Confidence            4578876  889999999999999988876           59999999999999999998777         3567899


Q ss_pred             CCC--CCCccCCHHHHHHHHHhhcC
Q psy4576         189 CDF--CGSQQRTKCRFYYHLRDKHL  211 (400)
Q Consensus       189 C~~--C~~~f~~~~~l~~H~~~~~~  211 (400)
                      |-.  |+..|.+...-..|+-..|.
T Consensus       147 ClvEgCt~KFkT~r~RkdH~I~~Hk  171 (253)
T KOG4173|consen  147 CLVEGCTEKFKTSRDRKDHMIRMHK  171 (253)
T ss_pred             HHHHhhhhhhhhhhhhhhHHHHhcc
Confidence            965  99999999999999888774

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=93.97  E-value=0.042  Score=28.79  Aligned_cols=19  Identities=37%  Similarity=0.810  Sum_probs=11.6

Q ss_pred             ecccccccccChhhHHHHHh
Q psy4576         341 CCEICGRSYSTAAYLKVHMS  360 (400)
Q Consensus       341 ~C~~C~~~f~~~~~L~~H~~  360 (400)
                      .|+.||+.| ..+.|..|+.
T Consensus         4 ~C~~CgR~F-~~~~l~~H~~   22 (25)
T PF13913_consen    4 PCPICGRKF-NPDRLEKHEK   22 (25)
T ss_pred             cCCCCCCEE-CHHHHHHHHH
Confidence            566666666 4556666654

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=93.44  E-value=0.039  Score=34.37  Aligned_cols=30  Identities=20%  Similarity=0.281  Sum_probs=21.9

Q ss_pred             CcccccccCcccccccChhHHHHHHhhhcC
Q psy4576          88 DVWDEERCRSCGLLSGSITQTYIHYLECKN  117 (400)
Q Consensus        88 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  117 (400)
                      +++..+.||-|+..|....+..+|+.+.|.
T Consensus        13 DGE~~lrCPRC~~~FR~~K~Y~RHVNKaH~   42 (65)
T COG4049          13 DGEEFLRCPRCGMVFRRRKDYIRHVNKAHG   42 (65)
T ss_pred             CCceeeeCCchhHHHHHhHHHHHHhhHHhh
Confidence            456667788888888887777777666663

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=93.25  E-value=0.022  Score=54.48  Aligned_cols=149  Identities=18%  Similarity=0.257  Sum_probs=93.7

Q ss_pred             cccCcCccccCCHHHHHHHHH--HcCCC--Cceecc--cccccccChhHHhhhHhhhcchhhHHHHhhhcCCcccccc--
Q psy4576         217 LSCEFCSRIFTKKELLRSHLA--VHKIG--KNYQCY--YCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDV--  288 (400)
Q Consensus       217 ~~C~~C~~~f~~~~~l~~H~~--~h~~~--~~~~C~--~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~~~~C~~--  288 (400)
                      +.|..|...|.....|..|..  .|.++  +++.|+  .|++.|.....+..|...+..           ..++.+..  
T Consensus       290 ~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~  358 (467)
T COG5048         290 IKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTS-----------ISPAKEKLLN  358 (467)
T ss_pred             CCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccC-----------CCcccccccc
Confidence            678888888888888888888  78888  788888  688888888888888744332           22233222  


Q ss_pred             ccccccChhh-----HHHHHhhhcCCCCCccc--ccccccCCHHHHHHHHHHhcCCC--CeecccccccccChhhHHHHH
Q psy4576         289 CGKSYVRKGA-----LTEHHQREHQGKKPVCT--ICGKMLIDKRSLANHMNTHTGLK--PHCCEICGRSYSTAAYLKVHM  359 (400)
Q Consensus       289 C~~~f~~~~~-----l~~H~~~~h~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~--~~~C~~C~~~f~~~~~L~~H~  359 (400)
                      +...+.....     ........+......+.  .|...+.....+..|...|....  .+.+..|.+.|.....+..|+
T Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (467)
T COG5048         359 SSSKFSPLLNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHK  438 (467)
T ss_pred             CccccccccCCCCccchhhccCccCCccccccccchhhhhccccccccccccccccCCcCCCCCcchhhccCcccccccc
Confidence            2222222111     11111122222223332  36666666667777766666554  577788999999888899998


Q ss_pred             hhcCCCCcccCCCCccc
Q psy4576         360 SCHTGETSHTCHLCPQK  376 (400)
Q Consensus       360 ~~h~~~~~~~C~~C~~~  376 (400)
                      +.|....++.|..++..
T Consensus       439 ~~~~~~~~~~~~~~~~~  455 (467)
T COG5048         439 KIHTNHAPLLCSILKSF  455 (467)
T ss_pred             cccccCCceeecccccc
Confidence            88887777666555443

>smart00451 ZnF_U1 U1-like zinc finger

Probab=93.20  E-value=0.075  Score=30.39  Aligned_cols=22  Identities=14%  Similarity=0.616  Sum_probs=13.9

Q ss_pred             CeecccccccccChhhHHHHHh
Q psy4576         339 PHCCEICGRSYSTAAYLKVHMS  360 (400)
Q Consensus       339 ~~~C~~C~~~f~~~~~L~~H~~  360 (400)
                      +|.|.+|++.|.+...+..|++
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~   24 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLK   24 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHC
Confidence            4666666666666666666653

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>smart00451 ZnF_U1 U1-like zinc finger

Probab=92.94  E-value=0.068  Score=30.57  Aligned_cols=23  Identities=30%  Similarity=0.550  Sum_probs=21.0

Q ss_pred             cccCCCCccccCCchHHHHHHhh
Q psy4576         367 SHTCHLCPQKFRQRSSYTLHYKT  389 (400)
Q Consensus       367 ~~~C~~C~~~f~~~~~l~~H~~~  389 (400)
                      +|.|.+|+..|.+...+..|++.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            58899999999999999999865

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=92.92  E-value=0.026  Score=53.97  Aligned_cols=155  Identities=15%  Similarity=0.196  Sum_probs=93.8

Q ss_pred             cccccCcccccccChhHHHHHHhh-hcCCC--Cccccc--ccccccCChHHHHHHhhhhcCCcccccCCCCccccccccc
Q psy4576          91 DEERCRSCGLLSGSITQTYIHYLE-CKNRG--KLYECS--LCNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNR  165 (400)
Q Consensus        91 ~~~~C~~C~~~f~~~~~l~~H~~~-~h~~~--~~~~C~--~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~  165 (400)
                      .++.|..|...|.....+..|... .|..+  +++.|+  .|++.|.....+..|...+.+......      .=..+..
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~  361 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKE------KLLNSSS  361 (467)
T ss_pred             cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCcccc------ccccCcc
Confidence            467888888888888888888332 78888  888888  788888888888888888877654411      0112232


Q ss_pred             cccCHHHH----HHhHhhcCCCCCcccCCC--CCCccCCHHHHHHHHHhhcCCCCCCcccCcCccccCCHHHHHHHHHHc
Q psy4576         166 TFDSKAKI----QEHIISSHMHEKLYQCDF--CGSQQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHLAVH  239 (400)
Q Consensus       166 ~f~~~~~l----~~H~~~~H~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h  239 (400)
                      .+.....-    .......-.....+.+..  |...+.....+..|...+-...+..+.+..|...+.....+..|++.+
T Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (467)
T COG5048         362 KFSPLLNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIH  441 (467)
T ss_pred             ccccccCCCCccchhhccCccCCccccccccchhhhhccccccccccccccccCCcCCCCCcchhhccCccccccccccc
Confidence            22222110    111101111222333322  445555555566665555555555667777888888777777777777


Q ss_pred             CCCCceeccccc
Q psy4576         240 KIGKNYQCYYCR  251 (400)
Q Consensus       240 ~~~~~~~C~~C~  251 (400)
                      ....++.|..+.
T Consensus       442 ~~~~~~~~~~~~  453 (467)
T COG5048         442 TNHAPLLCSILK  453 (467)
T ss_pred             ccCCceeecccc
Confidence            766655554433

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=92.78  E-value=0.063  Score=30.31  Aligned_cols=24  Identities=25%  Similarity=0.773  Sum_probs=14.7

Q ss_pred             eecccccccccChhhHHHHHhhcCCCCcccCCCCcc
Q psy4576         340 HCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQ  375 (400)
Q Consensus       340 ~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~  375 (400)
                      |.|..||..+....            .++.|++||.
T Consensus         2 ~~C~~CGy~y~~~~------------~~~~CP~Cg~   25 (33)
T cd00350           2 YVCPVCGYIYDGEE------------APWVCPVCGA   25 (33)
T ss_pred             EECCCCCCEECCCc------------CCCcCcCCCC
Confidence            56777776654322            5567777764

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=91.45  E-value=0.28  Score=36.79  Aligned_cols=26  Identities=19%  Similarity=0.447  Sum_probs=24.1

Q ss_pred             cccC----CCCccccCCchHHHHHHhhhCC
Q psy4576         367 SHTC----HLCPQKFRQRSSYTLHYKTHHP  392 (400)
Q Consensus       367 ~~~C----~~C~~~f~~~~~l~~H~~~hh~  392 (400)
                      -|.|    +.|++.+.+...|.+|++.+|+
T Consensus        80 G~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   80 GYRCQCDPPHCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             CeeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence            3899    9999999999999999999986

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>KOG2893|consensus

Probab=91.37  E-value=0.054  Score=45.07  Aligned_cols=47  Identities=32%  Similarity=0.706  Sum_probs=30.2

Q ss_pred             ccCcCccccCCHHHHHHHHHHcCCCCceecccccccccChhHHhhhHhhhc
Q psy4576         218 SCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVH  268 (400)
Q Consensus       218 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h  268 (400)
                      .|-+|++.|.+...|..|++.    +-|+|-+|-+...+-..|..|-..+|
T Consensus        12 wcwycnrefddekiliqhqka----khfkchichkkl~sgpglsihcmqvh   58 (341)
T KOG2893|consen   12 WCWYCNREFDDEKILIQHQKA----KHFKCHICHKKLFSGPGLSIHCMQVH   58 (341)
T ss_pred             eeeecccccchhhhhhhhhhh----ccceeeeehhhhccCCCceeehhhhh
Confidence            566677777777767666654    33777777666666666666655544

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=91.31  E-value=0.092  Score=32.78  Aligned_cols=30  Identities=33%  Similarity=0.595  Sum_probs=18.1

Q ss_pred             CCCCcccCCCCccccCCchHHHHHHhhhCC
Q psy4576         363 TGETSHTCHLCPQKFRQRSSYTLHYKTHHP  392 (400)
Q Consensus       363 ~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~  392 (400)
                      .|+..++||-|+..|....++.+|+..-|+
T Consensus        13 DGE~~lrCPRC~~~FR~~K~Y~RHVNKaH~   42 (65)
T COG4049          13 DGEEFLRCPRCGMVFRRRKDYIRHVNKAHG   42 (65)
T ss_pred             CCceeeeCCchhHHHHHhHHHHHHhhHHhh
Confidence            345556666666666666666666655553

>TIGR00622 ssl1 transcription factor ssl1

Probab=90.68  E-value=0.59  Score=34.65  Aligned_cols=86  Identities=16%  Similarity=0.261  Sum_probs=39.0

Q ss_pred             CcccccccccccCChHHHHHHhhhhcCCccccc----CCCCccccccccccccCHHHHHHhHhhcCCCCCcccCCCCCCc
Q psy4576         120 KLYECSLCNESFENKKVLFRHLRGKHGMKIKLS----RHKTKCVCHYCNRTFDSKAKIQEHIISSHMHEKLYQCDFCGSQ  195 (400)
Q Consensus       120 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~----~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~  195 (400)
                      -|..|++|+.+.-+...|.+-..---+..++..    .....-.|--|...|........   ..-.....|+|+.|...
T Consensus        14 LP~~CpiCgLtLVss~HLARSyHHLfPl~~f~ev~~~~~~~~~~C~~C~~~f~~~~~~~~---~~~~~~~~y~C~~C~~~   90 (112)
T TIGR00622        14 LPVECPICGLTLILSTHLARSYHHLFPLKAFQEIPLEEYNGSRFCFGCQGPFPKPPVSPF---DELKDSHRYVCAVCKNV   90 (112)
T ss_pred             CCCcCCcCCCEEeccchHHHhhhccCCCcccccccccccCCCCcccCcCCCCCCcccccc---cccccccceeCCCCCCc
Confidence            356666666666555555443211111111100    01111247777777765421110   00122345667777666


Q ss_pred             cCCHHHHHHHHHh
Q psy4576         196 QRTKCRFYYHLRD  208 (400)
Q Consensus       196 f~~~~~l~~H~~~  208 (400)
                      |--.-++..|-..
T Consensus        91 FC~dCD~fiHe~L  103 (112)
T TIGR00622        91 FCVDCDVFVHESL  103 (112)
T ss_pred             cccccchhhhhhc
Confidence            6666666666433

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=89.75  E-value=0.66  Score=34.73  Aligned_cols=23  Identities=17%  Similarity=0.641  Sum_probs=14.8

Q ss_pred             ccccccccccCHHHHHHhHhhcCC
Q psy4576         159 VCHYCNRTFDSKAKIQEHIISSHM  182 (400)
Q Consensus       159 ~C~~C~~~f~~~~~l~~H~~~~H~  182 (400)
                      .|..|...... +.+..|+...|.
T Consensus        13 IC~~C~~av~~-~~v~~HL~~~H~   35 (109)
T PF12013_consen   13 ICRQCQYAVQP-SEVESHLRKRHH   35 (109)
T ss_pred             EeCCCCcccCc-hHHHHHHHHhcc
Confidence            67777766554 677777754553

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>KOG2893|consensus

Probab=89.66  E-value=0.14  Score=42.78  Aligned_cols=42  Identities=21%  Similarity=0.474  Sum_probs=32.7

Q ss_pred             cCCCCCCccCCHHHHHHHHHhhcCCCCCCcccCcCccccCCHHHHHHH
Q psy4576         188 QCDFCGSQQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSH  235 (400)
Q Consensus       188 ~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H  235 (400)
                      .|-+|++.|.....|.+|++..|      |+|.+|.+..-+--.|..|
T Consensus        12 wcwycnrefddekiliqhqkakh------fkchichkkl~sgpglsih   53 (341)
T KOG2893|consen   12 WCWYCNREFDDEKILIQHQKAKH------FKCHICHKKLFSGPGLSIH   53 (341)
T ss_pred             eeeecccccchhhhhhhhhhhcc------ceeeeehhhhccCCCceee
Confidence            58888888888888888877666      6888888777666666666

>TIGR00622 ssl1 transcription factor ssl1

Probab=88.40  E-value=0.75  Score=34.12  Aligned_cols=77  Identities=18%  Similarity=0.291  Sum_probs=36.5

Q ss_pred             CccccccccccccChhhHHHHHhhhcC--CCCC------------cccccccccCCHHHHHHHHHHhcCCCCeecccccc
Q psy4576         282 REFICDVCGKSYVRKGALTEHHQREHQ--GKKP------------VCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGR  347 (400)
Q Consensus       282 ~~~~C~~C~~~f~~~~~l~~H~~~~h~--~~~~------------~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~  347 (400)
                      -|-.|+.||....+...|.+..  +|-  -..|            .|-.|...|........  ..-.....|+|+.|..
T Consensus        14 LP~~CpiCgLtLVss~HLARSy--HHLfPl~~f~ev~~~~~~~~~~C~~C~~~f~~~~~~~~--~~~~~~~~y~C~~C~~   89 (112)
T TIGR00622        14 LPVECPICGLTLILSTHLARSY--HHLFPLKAFQEIPLEEYNGSRFCFGCQGPFPKPPVSPF--DELKDSHRYVCAVCKN   89 (112)
T ss_pred             CCCcCCcCCCEEeccchHHHhh--hccCCCcccccccccccCCCCcccCcCCCCCCcccccc--cccccccceeCCCCCC
Confidence            3556777777766666666542  221  0101            25556665554321100  0011123466666666


Q ss_pred             cccChhhHHHHHhhc
Q psy4576         348 SYSTAAYLKVHMSCH  362 (400)
Q Consensus       348 ~f~~~~~L~~H~~~h  362 (400)
                      .|-..-.+-.|...|
T Consensus        90 ~FC~dCD~fiHe~Lh  104 (112)
T TIGR00622        90 VFCVDCDVFVHESLH  104 (112)
T ss_pred             ccccccchhhhhhcc
Confidence            665555555555444

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase

Probab=86.99  E-value=0.37  Score=27.38  Aligned_cols=25  Identities=24%  Similarity=0.679  Sum_probs=15.3

Q ss_pred             CeecccccccccChhhHHHHHhhcCCCCcccCCCCcc
Q psy4576         339 PHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQ  375 (400)
Q Consensus       339 ~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~  375 (400)
                      .|.|..||..+...            +.|-.|++||.
T Consensus         2 ~~~C~~CG~i~~g~------------~~p~~CP~Cg~   26 (34)
T cd00729           2 VWVCPVCGYIHEGE------------EAPEKCPICGA   26 (34)
T ss_pred             eEECCCCCCEeECC------------cCCCcCcCCCC
Confidence            36777777665432            14567777775

In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=85.98  E-value=0.46  Score=28.94  Aligned_cols=27  Identities=22%  Similarity=0.509  Sum_probs=14.7

Q ss_pred             CCcccCCCCccccCC----chHHHHHHhhhC
Q psy4576         365 ETSHTCHLCPQKFRQ----RSSYTLHYKTHH  391 (400)
Q Consensus       365 ~~~~~C~~C~~~f~~----~~~l~~H~~~hh  391 (400)
                      ....+|.+|++.+..    .+.|.+|++..|
T Consensus        14 ~~~a~C~~C~~~~~~~~~~ts~l~~HL~~~h   44 (45)
T PF02892_consen   14 KKKAKCKYCGKVIKYSSGGTSNLKRHLKKKH   44 (45)
T ss_dssp             SS-EEETTTTEE-----SSTHHHHHHHHHTT
T ss_pred             cCeEEeCCCCeEEeeCCCcHHHHHHhhhhhC
Confidence            344567777766555    366777776555

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.

>COG2879 Uncharacterized small protein [Function unknown]

Probab=84.40  E-value=0.92  Score=29.32  Aligned_cols=20  Identities=25%  Similarity=0.474  Sum_probs=17.6

Q ss_pred             CCchHHHHHHhhhCCCCCCC
Q psy4576         378 RQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       378 ~~~~~l~~H~~~hh~~~~~~  397 (400)
                      ...++...||+.+||++|++
T Consensus        23 pdYdnYVehmr~~hPd~p~m   42 (65)
T COG2879          23 PDYDNYVEHMRKKHPDKPPM   42 (65)
T ss_pred             CcHHHHHHHHHHhCcCCCcc
Confidence            46788999999999999986

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=84.04  E-value=0.5  Score=35.06  Aligned_cols=12  Identities=33%  Similarity=1.052  Sum_probs=5.1

Q ss_pred             Ceeccccccccc
Q psy4576         339 PHCCEICGRSYS  350 (400)
Q Consensus       339 ~~~C~~C~~~f~  350 (400)
                      |..|+.||..|.
T Consensus        26 PivCP~CG~~~~   37 (108)
T PF09538_consen   26 PIVCPKCGTEFP   37 (108)
T ss_pred             CccCCCCCCccC
Confidence            444444444443

The function of members of this family is unknown.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=83.82  E-value=0.27  Score=41.82  Aligned_cols=43  Identities=19%  Similarity=0.419  Sum_probs=28.0

Q ss_pred             CCeecccccccccChhhHHHHHhhc----------CCCCc-----ccCCCCccccCCc
Q psy4576         338 KPHCCEICGRSYSTAAYLKVHMSCH----------TGETS-----HTCHLCPQKFRQR  380 (400)
Q Consensus       338 ~~~~C~~C~~~f~~~~~L~~H~~~h----------~~~~~-----~~C~~C~~~f~~~  380 (400)
                      +.+.||+|+..|.....+....+.-          .+..|     ..||.||++|...
T Consensus         4 k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~   61 (214)
T PF09986_consen    4 KKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEE   61 (214)
T ss_pred             CceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccccc
Confidence            5677888888887766555554431          12233     4799999987754

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=83.56  E-value=0.82  Score=26.54  Aligned_cols=32  Identities=19%  Similarity=0.450  Sum_probs=17.9

Q ss_pred             ccCcccccccChhHHHHHHhhhcCCCCccccccccccc
Q psy4576          94 RCRSCGLLSGSITQTYIHYLECKNRGKLYECSLCNESF  131 (400)
Q Consensus        94 ~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f  131 (400)
                      .||.|+..|.-..+-      .-......+|+.|+..|
T Consensus         4 ~CP~C~~~f~v~~~~------l~~~~~~vrC~~C~~~f   35 (37)
T PF13719_consen    4 TCPNCQTRFRVPDDK------LPAGGRKVRCPKCGHVF   35 (37)
T ss_pred             ECCCCCceEEcCHHH------cccCCcEEECCCCCcEe
Confidence            577777766554421      11234556677776655

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=82.75  E-value=0.97  Score=26.04  Aligned_cols=32  Identities=22%  Similarity=0.506  Sum_probs=16.2

Q ss_pred             ccCcccccccChhHHHHHHhhhcCCCCccccccccccc
Q psy4576          94 RCRSCGLLSGSITQTYIHYLECKNRGKLYECSLCNESF  131 (400)
Q Consensus        94 ~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f  131 (400)
                      .|+.|+..|.-....      +-......+|+.|+..|
T Consensus         4 ~Cp~C~~~y~i~d~~------ip~~g~~v~C~~C~~~f   35 (36)
T PF13717_consen    4 TCPNCQAKYEIDDEK------IPPKGRKVRCSKCGHVF   35 (36)
T ss_pred             ECCCCCCEEeCCHHH------CCCCCcEEECCCCCCEe
Confidence            466666666544321      22234456666666554

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=82.32  E-value=0.79  Score=24.19  Aligned_cols=10  Identities=30%  Similarity=0.710  Sum_probs=5.8

Q ss_pred             ccCcCccccC
Q psy4576         218 SCEFCSRIFT  227 (400)
Q Consensus       218 ~C~~C~~~f~  227 (400)
                      .|+.||..|.
T Consensus        16 ~Cp~CG~~F~   25 (26)
T PF10571_consen   16 FCPHCGYDFE   25 (26)
T ss_pred             cCCCCCCCCc
Confidence            5666666553

Several members are annotated as putative helicases.

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=81.51  E-value=0.66  Score=27.04  Aligned_cols=32  Identities=16%  Similarity=0.432  Sum_probs=16.0

Q ss_pred             ccCcccccccChhHHHHHHhhhcCCCCccccccccccc
Q psy4576          94 RCRSCGLLSGSITQTYIHYLECKNRGKLYECSLCNESF  131 (400)
Q Consensus        94 ~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f  131 (400)
                      .|+.|+..|.-..+...      .......|+.|+..|
T Consensus         4 ~CP~C~~~~~v~~~~~~------~~~~~v~C~~C~~~~   35 (38)
T TIGR02098         4 QCPNCKTSFRVVDSQLG------ANGGKVRCGKCGHVW   35 (38)
T ss_pred             ECCCCCCEEEeCHHHcC------CCCCEEECCCCCCEE
Confidence            56666666654433211      122345666666554

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=80.01  E-value=1.1  Score=28.69  Aligned_cols=32  Identities=25%  Similarity=0.634  Sum_probs=17.9

Q ss_pred             ccccCcccccccChhHHHHHHhhhcCCCCccccccccc
Q psy4576          92 EERCRSCGLLSGSITQTYIHYLECKNRGKLYECSLCNE  129 (400)
Q Consensus        92 ~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~  129 (400)
                      .|.||.||..-...-.      +......+|.|+.||.
T Consensus        27 ~F~CPnCGe~~I~Rc~------~CRk~g~~Y~Cp~CGF   58 (61)
T COG2888          27 KFPCPNCGEVEIYRCA------KCRKLGNPYRCPKCGF   58 (61)
T ss_pred             EeeCCCCCceeeehhh------hHHHcCCceECCCcCc
Confidence            4678888755443322      1222356777777764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	400
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		2e-21
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		1e-10
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		2e-09
2kmk_A	82	Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length =		2e-09
2jp9_A	119	Structure Of The Wilms Tumor Suppressor Protein Zin		4e-09
1a1f_A	90	Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc		1e-08
1g2f_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		1e-08
1a1h_A	90	Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		2e-08
1a1h_A	90	Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		6e-08
2dmd_A	96	Solution Structure Of The N-Terminal C2h2 Type Zinc		2e-08
1jk1_A	90	Zif268 D20a Mutant Bound To Wt Dna Site Length = 90		4e-08
1jk1_A	90	Zif268 D20a Mutant Bound To Wt Dna Site Length = 90		2e-07
1a1i_A	90	Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		5e-08
1a1i_A	90	Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		1e-07
1aay_A	90	Zif268 Zinc Finger-Dna Complex Length = 90		5e-08
1aay_A	90	Zif268 Zinc Finger-Dna Complex Length = 90		1e-07
2csh_A	110	Solution Structure Of Tandem Repeat Of The Zf-C2h2		1e-07
1p47_A	87	Crystal Structure Of Tandem Zif268 Molecules Comple		1e-07
1p47_A	87	Crystal Structure Of Tandem Zif268 Molecules Comple		2e-07
1zaa_C	87	Zinc Finger-Dna Recognition: Crystal Structure Of A		1e-07
1zaa_C	87	Zinc Finger-Dna Recognition: Crystal Structure Of A		2e-07
1ubd_C	124	Co-Crystal Structure Of Human Yy1 Zinc Finger Domai		5e-07
1g2d_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		6e-07
1g2d_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		9e-07
2ee8_A	106	Solution Structure Of Three Zf-C2h2 Domains From Mo		1e-06
2dlq_A	124	Solution Structure Of The Tandem Four Zf-C2h2 Domai		2e-06
2cot_A	77	Solution Structure Of The First And Second Zf-C2h2		1e-05
2rpc_A	155	Solution Structure Of The Tandem Zf-C2h2 Domains Fr		2e-05
2rpc_A	155	Solution Structure Of The Tandem Zf-C2h2 Domains Fr		4e-05
2wbs_A	89	Crystal Structure Of The Zinc Finger Domain Of Klf4		2e-05
2wbs_A	89	Crystal Structure Of The Zinc Finger Domain Of Klf4		3e-04
2wbu_A	90	Crystal Structure Of The Zinc Finger Domain Of Klf4		4e-05
2wbu_A	90	Crystal Structure Of The Zinc Finger Domain Of Klf4		3e-04
2ebt_A	100	Solution Structure Of Three Tandem Repeats Of Zf-C2		4e-05
2gli_A	155	Five-Finger GliDNA COMPLEX Length = 155		7e-05
2gli_A	155	Five-Finger GliDNA COMPLEX Length = 155		2e-04
2yt9_A	95	Solution Structure Of C2h2 Type Zinc Finger Domain		1e-04
2lce_A	74	Chemical Shift Assignment Of Hr4436b From Homo Sapi		1e-04
1llm_C	88	Crystal Structure Of A Zif23-Gcn4 Chimera Bound To		2e-04

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score =  100 bits (248), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 86/174 (49%), Gaps = 13/174 (7%)
Query: 218 SCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRT 277
           +C  C + F++ + L  H   H   K Y+C  C K++  K +LT H           +RT
Sbjct: 23  ACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRH-----------QRT 71
Query: 278 AILKREFICDVCGKSYVRKGALTEHHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTG 336
              ++ + C  CGKS+ ++  L  H QR H G+KP  C  CGK       L  H  THTG
Sbjct: 72  HTGEKPYKCPECGKSFSQRANLRAH-QRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTG 130
Query: 337 LKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
            KP+ C  CG+S+S    L  H   HTGE  + C  C + F +R +  +H +TH
Sbjct: 131 EKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 280 LKREFICDVCGKSYVRKGALTEHHQREHQGKKPV-CTICGKMLIDKRSLANHMNTHTGLK 338
           +++ + C  CGKS+ +   L + HQR H G+KP  C  CGK       L  H  THTG K
Sbjct: 1   MEKPYKCPECGKSFSQSSNL-QKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEK 59
Query: 339 PHCCEICGRSYSTAAYLKVHMSCH 362
           P+ C  CG+S+S + +L  H   H
Sbjct: 60  PYKCPECGKSFSRSDHLSRHQRTH 83

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 41/77 (53%)
Query: 314 CTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC 373
           C  CGK      +L  H  THTG KP+ C  CG+S+S ++ L+ H   HTGE  + C  C
Sbjct: 7   CPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPEC 66
Query: 374 PQKFRQRSSYTLHYKTH 390
            + F +    + H +TH
Sbjct: 67  GKSFSRSDHLSRHQRTH 83

>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length = 82

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 42/82 (51%)
Query: 283 EFICDVCGKSYVRKGALTEHHQREHQGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
            F C +CGKS+ R   L+ H       +   C  CGK    K  +  H   HTG KPH C
Sbjct: 1   SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 343 EICGRSYSTAAYLKVHMSCHTG 364
           ++CG+++S ++ L  H   HTG
Sbjct: 61  QVCGKAFSQSSNLITHSRKHTG 82

>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc Finger Domain Bound To Dna Length = 119

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 56/120 (46%), Gaps = 8/120 (6%)
Query: 278 AILKREFICDV--CGKSYVRKGALTEHHQREHQGKKPV-CTI--CGKMLIDKRSLANHMN 332
           A  KR F+C    C K Y +   L + H R+H G+KP  C    C +       L  H  
Sbjct: 1   ASEKRPFMCAYPGCNKRYFKLSHL-QMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQR 59
Query: 333 THTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHL--CPQKFRQRSSYTLHYKTH 390
            HTG+KP  C+ C R +S + +LK H   HTGE   +C    C +KF +      H+  H
Sbjct: 60  RHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119

>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site) Length = 90

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 38/74 (51%)
Query: 317 CGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQK 376
           C +   D  +L  H+  HTG KP  C IC R++S + +L  H+  HTGE    C +C +K
Sbjct: 12  CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 377 FRQRSSYTLHYKTH 390
           F +      H K H
Sbjct: 72  FARSDERKRHTKIH 85

>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (Tatazf;clone #6) Length = 90

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 38/74 (51%)
Query: 317 CGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQK 376
           C +    K +L  H+  HTG KP  C IC R++S  A L  H+  HTGE    C +C +K
Sbjct: 12  CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRK 71
Query: 377 FRQRSSYTLHYKTH 390
           F    + T H K H
Sbjct: 72  FATLHTRTRHTKIH 85

>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 280 LKREFICDV--CGKSYVRKGALTEHHQREHQGKKPV-CTICGKMLIDKRSLANHMNTHTG 336
           ++R + C V  C + + + G+LT H  R H G+KP  C IC +       L  H+ THTG
Sbjct: 1   MERPYACPVESCDRRFSQSGSLTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 337 LKPHCCEICGRSYSTAAYLKVHMSCH 362
            KP  C+ICGR ++ +   K H   H
Sbjct: 60  EKPFACDICGRKFARSDERKRHTKIH 85

>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 37/74 (50%)
Query: 317 CGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQK 376
           C +      SL  H+  HTG KP  C IC R++S + +L  H+  HTGE    C +C +K
Sbjct: 12  CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 377 FRQRSSYTLHYKTH 390
           F +      H K H
Sbjct: 72  FARSDERKRHTKIH 85

>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type Zinc-Binding Domain Of The Zinc Finger Protein 64, Isoforms 1 And 2 Length = 96

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 41/77 (53%)
Query: 314 CTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC 373
           C +CGK    K  L  HM  HTG+KP+ C+ C  + + ++ L  H+  H+ E    C +C
Sbjct: 11  CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Query: 374 PQKFRQRSSYTLHYKTH 390
           P   R  S  T+H ++H
Sbjct: 71  PYASRNSSQLTVHLRSH 87

>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site Length = 90

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 280 LKREFICDV--CGKSYVRKGALTEHHQREHQGKKPV-CTICGKMLIDKRSLANHMNTHTG 336
           ++R + C V  C + + R   LT H  R H G+KP  C IC +       L  H+ THTG
Sbjct: 1   MERPYACPVESCDRRFSRSAELTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 337 LKPHCCEICGRSYSTAAYLKVHMSCH 362
            KP  C+ICGR ++ +   K H   H
Sbjct: 60  EKPFACDICGRKFARSDERKRHTKIH 85

>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site Length = 90

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 36/74 (48%)
Query: 317 CGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQK 376
           C +       L  H+  HTG KP  C IC R++S + +L  H+  HTGE    C +C +K
Sbjct: 12  CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 377 FRQRSSYTLHYKTH 390
           F +      H K H
Sbjct: 72  FARSDERKRHTKIH 85

>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 280 LKREFICDV--CGKSYVRKGALTEHHQREHQGKKPV-CTICGKMLIDKRSLANHMNTHTG 336
           ++R + C V  C + + R   LT H  R H G+KP  C IC +       L  H+ THTG
Sbjct: 1   MERPYACPVESCDRRFSRSADLTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 337 LKPHCCEICGRSYSTAAYLKVHMSCH 362
            KP  C+ICGR ++ +   K H   H
Sbjct: 60  EKPFACDICGRKFARSDERKRHTKIH 85

>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 36/74 (48%)
Query: 317 CGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQK 376
           C +       L  H+  HTG KP  C IC R++S + +L  H+  HTGE    C +C +K
Sbjct: 12  CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 377 FRQRSSYTLHYKTH 390
           F +      H K H
Sbjct: 72  FARSDERKRHTKIH 85

>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex Length = 90

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 280 LKREFICDV--CGKSYVRKGALTEHHQREHQGKKPV-CTICGKMLIDKRSLANHMNTHTG 336
           ++R + C V  C + + R   LT H  R H G+KP  C IC +       L  H+ THTG
Sbjct: 1   MERPYACPVESCDRRFSRSDELTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 337 LKPHCCEICGRSYSTAAYLKVHMSCH 362
            KP  C+ICGR ++ +   K H   H
Sbjct: 60  EKPFACDICGRKFARSDERKRHTKIH 85

>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex Length = 90

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 36/74 (48%)
Query: 317 CGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQK 376
           C +       L  H+  HTG KP  C IC R++S + +L  H+  HTGE    C +C +K
Sbjct: 12  CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 377 FRQRSSYTLHYKTH 390
           F +      H K H
Sbjct: 72  FARSDERKRHTKIH 85

>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains Of Human Zinc Finger Protein 297b Length = 110

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%)
Query: 317 CGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQK 376
           CGK    K     HM+ H GL+P+ C +CG+ +    +L  HM  HTG   + C++C ++
Sbjct: 15  CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 377 FRQRSSYTLH 386
           F  R S+  H
Sbjct: 75  FMWRDSFHRH 84

>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To Dna Length = 87

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 281 KREFICDV--CGKSYVRKGALTEHHQREHQGKKPV-CTICGKMLIDKRSLANHMNTHTGL 337
           +R + C V  C + + R   LT H  R H G+KP  C IC +       L  H+ THTG 
Sbjct: 1   ERPYACPVESCDRRFSRSDELTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 59
Query: 338 KPHCCEICGRSYSTAAYLKVHMSCH 362
           KP  C+ICGR ++ +   K H   H
Sbjct: 60  KPFACDICGRKFARSDERKRHTKIH 84

>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To Dna Length = 87

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 36/74 (48%)
Query: 317 CGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQK 376
           C +       L  H+  HTG KP  C IC R++S + +L  H+  HTGE    C +C +K
Sbjct: 11  CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 70
Query: 377 FRQRSSYTLHYKTH 390
           F +      H K H
Sbjct: 71  FARSDERKRHTKIH 84

>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A Zif268- Dna Complex At 2.1 Angstroms Length = 87

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 281 KREFICDV--CGKSYVRKGALTEHHQREHQGKKPV-CTICGKMLIDKRSLANHMNTHTGL 337
           +R + C V  C + + R   LT H  R H G+KP  C IC +       L  H+ THTG 
Sbjct: 2   ERPYACPVESCDRRFSRSDELTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 338 KPHCCEICGRSYSTAAYLKVHMSCH 362
           KP  C+ICGR ++ +   K H   H
Sbjct: 61  KPFACDICGRKFARSDERKRHTKIH 85

>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A Zif268- Dna Complex At 2.1 Angstroms Length = 87

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 36/74 (48%)
Query: 317 CGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQK 376
           C +       L  H+  HTG KP  C IC R++S + +L  H+  HTGE    C +C +K
Sbjct: 12  CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 377 FRQRSSYTLHYKTH 390
           F +      H K H
Sbjct: 72  FARSDERKRHTKIH 85

>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound To The Adeno-Associated Virus P5 Initiator Element Length = 124

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 295 RKGALTEHHQREHQGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCC--EICGRSYSTA 352
           R  +    H   H  +  VC  CGK  ++   L  H   HTG KP  C  E CG+ +S  
Sbjct: 18  RDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLD 77
Query: 353 AYLKVHMSCHTGETSHTCHL--CPQKFRQRSSYTLHYKTH 390
             L+ H+  HTG+  + C    C +KF Q ++   H  TH
Sbjct: 78  FNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117

>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE #2) Length = 90

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 280 LKREFICDV--CGKSYVRKGALTEHHQREHQGKKPV-CTICGKMLIDKRSLANHMNTHTG 336
           ++R + C V  C + + +K  L + H R H G+KP  C IC +       L  H+ THTG
Sbjct: 1   MERPYACPVESCDRRFSQKTNL-DTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTG 59
Query: 337 LKPHCCEICGRSYSTAAYLKVHMSCH 362
            KP  C+ICGR ++T      H   H
Sbjct: 60  EKPFACDICGRKFATLHTRDRHTKIH 85

>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE #2) Length = 90

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 36/74 (48%)
Query: 317 CGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQK 376
           C +    K +L  H+  HTG KP  C IC R++S    L  H+  HTGE    C +C +K
Sbjct: 12  CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRK 71
Query: 377 FRQRSSYTLHYKTH 390
           F    +   H K H
Sbjct: 72  FATLHTRDRHTKIH 85

>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse Protein Odd-Skipped-Related 2 Splicing Isoform 2 Length = 106

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 281 KREFICDVCGKSYVRKGALTEHHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKP 339
           K+EFIC  CG+ + +   L   H+R H  ++P  C IC K    +  L +H   H+  KP
Sbjct: 15  KKEFICKFCGRHFTKSYNLLI-HERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKP 73
Query: 340 HCCEICGRSYSTAAYLKVHMSCHTGETSHT 369
             C+ CG+ +  +  L VH + H   +S T
Sbjct: 74  FKCQECGKGFCQSRTLAVHKTLHMQTSSPT 103

>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain Repeats Of Murine Gli-Kruppel Family Member Hkr3 Length = 124

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 52/114 (45%), Gaps = 9/114 (7%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKPV-CTICGKMLIDKRSLANH-----MNTHTGLKP 339
           C  C K ++ K  L  H+ R+H G+KP  C  CGK    K +L  H     MN    +  
Sbjct: 10  CPTCHKKFLSKYYLKVHN-RKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV-- 66
Query: 340 HCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPG 393
             C +C  ++     L++HM  HTGE  + C  C Q+F Q+     H    H G
Sbjct: 67  FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120

>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain Of Zinc Finger Protein 435 Length = 77

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 281 KREFICDVCGKSYVRKGALTEHHQREHQGKKPV-CTICGKMLIDKRSLANHMNTHTGLKP 339
           +R + CD CGKS+     L++ H+R H G+KP  C  CGK  I +  L  H   HTG  P
Sbjct: 16  RRRYKCDECGKSFSHSSDLSK-HRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74

>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The Human Zinc Finger Protein Zic 3 Length = 155

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 55/123 (44%), Gaps = 8/123 (6%)
Query: 250 CRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGALTEHHQREHQG 309
           C +T+     L  H+   H+    +        E  C   GKS+  K  L  +H R H G
Sbjct: 31  CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEE--CPREGKSFKAKYKLV-NHIRVHTG 87
Query: 310 KKPV-CTI--CGKMLIDKRSLANHMNTHTGLKPHCCEI--CGRSYSTAAYLKVHMSCHTG 364
           +KP  C    CGK+     +L  H  THTG KP  CE   C R ++ ++  K HM  HT 
Sbjct: 88  EKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTS 147
Query: 365 ETS 367
           + S
Sbjct: 148 DKS 150

>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The Human Zinc Finger Protein Zic 3 Length = 155

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 314 CTICGKMLIDKRSLANHMNTHTGLKPHCCEI--CGRSYSTAAYLKVHMSCHTGETSHTCH 371
           C   GK    K  L NH+  HTG KP  C    CG+ ++ +  LK+H   HTGE    C 
Sbjct: 65  CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCE 124
Query: 372 L--CPQKFRQRSSYTLHYKTH 390
              C ++F   S    H   H
Sbjct: 125 FEGCDRRFANSSDRKKHMHVH 145

>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 89

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
Query: 275 KRTAILKREFICDV--CGKSYVRKGALTEHHQREHQGKKPV---CTICGKMLIDKRSLAN 329
           KRTA       CD   CGK+Y +   L  H  R H G+KP       CG        L  
Sbjct: 1   KRTAT----HTCDYAGCGKTYTKSSHLKAH-LRTHTGEKPYHCDWDGCGWKFARSDELTR 55
Query: 330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCH 362
           H   HTG +P  C+ C R++S + +L +HM  H
Sbjct: 56  HYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88

>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 89

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 317 CGKMLIDKRSLANHMNTHTGLKPHCCEI--CGRSYSTAAYLKVHMSCHTGETSHTCHLCP 374
           CGK       L  H+ THTG KP+ C+   CG  ++ +  L  H   HTG     C  C 
Sbjct: 13  CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 375 QKFRQRSSYTLHYKTH 390
           + F +     LH K H
Sbjct: 73  RAFSRSDHLALHMKRH 88

>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 90

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 285 ICDV--CGKSYVRKGALTEHHQREHQGKKPV---CTICGKMLIDKRSLANHMNTHTGLKP 339
            CD   CGK+Y +   L  H  R H G+KP       CG        L  H   HTG +P
Sbjct: 8   TCDYAGCGKTYTKSSHLKAH-LRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 66
Query: 340 HCCEICGRSYSTAAYLKVHMSCH 362
             C+ C R++S + +L +HM  H
Sbjct: 67  FQCQKCDRAFSRSDHLALHMKRH 89

>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 90

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 317 CGKMLIDKRSLANHMNTHTGLKPHCCEI--CGRSYSTAAYLKVHMSCHTGETSHTCHLCP 374
           CGK       L  H+ THTG KP+ C+   CG  ++ +  L  H   HTG     C  C 
Sbjct: 14  CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 375 QKFRQRSSYTLHYKTH 390
           + F +     LH K H
Sbjct: 74  RAFSRSDHLALHMKRH 89

>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2 Domains From Human Kruppel-Like Factor 5 Length = 100

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 44/96 (45%), Gaps = 11/96 (11%)
Query: 272 ELEKRTAILKREFICDV--CGKSYVRKGALTEHHQREHQGKKPV-CTI--CGKMLIDKRS 326
           +LEKR     R   CD   C K Y +   L  H  R H G+KP  CT   C         
Sbjct: 9   DLEKR-----RIHYCDYPGCTKVYTKSSHLKAH-LRTHTGEKPYKCTWEGCDWRFARSDE 62
Query: 327 LANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCH 362
           L  H   HTG KP  C +C RS+S + +L +HM  H
Sbjct: 63  LTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98

>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX Length = 155

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 21/159 (13%)
Query: 155 KTKCVCHYCNRTFDSKAKIQEHIISSHMH--EKLYQCDFCGSQQ-----RTKCRFYYHLR 207
           +T C    C++ FDS+ ++  HI S H+H   K + C + G  +     + +     H+R
Sbjct: 1   ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60
Query: 208 DKHLSKPANLSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYY--CRKTYCHKPNLTNHIQ 265
                KP   + E C + +++ E L++HL  H   K Y C +  C K +           
Sbjct: 61  RHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAF----------S 110
Query: 266 NVHLKSELEKRTAILKREFICDV--CGKSYVRKGALTEH 302
           N   +++ + RT   ++ ++C +  C K Y    +L +H
Sbjct: 111 NASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKH 149

>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX Length = 155

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 50/122 (40%), Gaps = 12/122 (9%)
Query: 287 DVCGKSYVRKGALTEHHQREH---QGKKPVCTICG-----KMLIDKRSLANHMNTHTGLK 338
           D C + +  +  L  H   EH   + K+ VC   G     +    +  L  HM  HTG K
Sbjct: 7   DGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEK 66
Query: 339 PHCC--EICGRSYSTAAYLKVHMSCHTGETSHTC--HLCPQKFRQRSSYTLHYKTHHPGV 394
           PH C  E C +SYS    LK H+  HTGE  + C    C + F   S    H    H   
Sbjct: 67  PHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNE 126
Query: 395 IP 396
            P
Sbjct: 127 KP 128

>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In Zinc Finger Protein 278 Length = 95

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKPV-CTICGKMLIDKRSLANHMNTHTGL--KPHCC 342
           C++CGK + R       H+  H G+KP  C +CG     K  ++ H+ +H G   KP+ C
Sbjct: 10  CEICGKIF-RDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 68
Query: 343 EICGRSYSTAAYLKVHM-SCHTGETS 367
           + CG+ +S   +L  H+   H+G +S
Sbjct: 69  QSCGKGFSRPDHLNGHIKQVHSGPSS 94

>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens, Northeast Structural Genomics Consortium Length = 74

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 28/52 (53%)
Query: 314 CTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGE 365
           C  C      K +LA+H   HTG KP+ C ICG  ++  A LK H   H+GE
Sbjct: 20  CDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGE 71

>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna Length = 88

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 337 LKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIP 396
           +KP  C IC R++S + +L  H+  HTGE    C +C +KF +      H    H  ++P
Sbjct: 1   MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH--ILP 58

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	400
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	1e-27
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	2e-22
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	2e-17
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	2e-15
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	6e-21
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	2e-20
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	4e-08
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	3e-07
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	1e-19
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	1e-17
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	4e-15
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	3e-19
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	2e-15
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	9e-11
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	4e-19
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	7e-19
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	8e-15
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	4e-05
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	4e-18
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	1e-16
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	3e-11
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	8e-07
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	5e-18
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	5e-14
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	6e-08
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	1e-05
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	1e-17
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	4e-14
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	4e-12
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	8e-08
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	1e-17
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	5e-16
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	7e-09
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	2e-05
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	2e-17
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	3e-17
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	5e-05
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	2e-16
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	4e-15
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	1e-08
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	1e-15
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	7e-13
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	2e-09
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	8e-08
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	2e-05
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	7e-05
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	3e-15
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	4e-13
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	1e-07
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	4e-07
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	8e-06
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	2e-05
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	4e-15
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	2e-13
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	1e-04
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	8e-14
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	4e-12
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	4e-09
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	4e-06
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	2e-13
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	1e-12
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	5e-13
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	6e-12
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	1e-11
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	2e-04
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	1e-12
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	1e-09
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	9e-07
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	7e-06
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	1e-12
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	1e-06
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	3e-12
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	2e-10
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	3e-08
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	5e-05
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	3e-12
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	1e-10
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	5e-04
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	6e-12
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	8e-09
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	2e-11
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	2e-10
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	6e-09
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	5e-05
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	2e-11
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	7e-11
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	3e-08
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	9e-05
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	2e-11
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	3e-09
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	7e-06
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	3e-04
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	3e-09
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	5e-06
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	3e-09
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	1e-07
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	3e-07
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	3e-05
2epa_A	72	Krueppel-like factor 10; transforming growth facto	1e-08
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	2e-08
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	1e-05
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	1e-04
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	3e-08
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	5e-05
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	3e-08
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	4e-08
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	1e-06
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	2e-04
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	4e-08
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	1e-04
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	2e-04
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	1e-07
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	2e-07
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	2e-07
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	4e-07
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	2e-07
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	2e-05
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	4e-07
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	1e-05
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	4e-07
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	2e-06
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	5e-07
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	6e-06
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	5e-07
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	8e-05
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	6e-07
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-06
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	6e-07
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	1e-04
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	7e-07
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	8e-06
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	8e-07
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	8e-05
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-06
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-05
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	1e-06
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	7e-06
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-06
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-06
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	2e-06
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	2e-06
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	2e-06
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	1e-05
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	2e-06
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	2e-05
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-06
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-06
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	2e-06
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	2e-06
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	6e-06
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-06
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-05
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	2e-06
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	4e-05
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	3e-06
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	5e-06
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-06
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	7e-04
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	8e-04
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-06
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-05
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1} Len	3e-06
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	3e-06
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	4e-06
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-06
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-05
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	3e-06
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	2e-04
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-06
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-06
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-06
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-05
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	4e-06
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	6e-06
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	4e-06
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	5e-06
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	4e-06
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	9e-05
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	5e-06
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	5e-06
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-06
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-04
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	5e-06
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	4e-05
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-06
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	8e-06
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	5e-06
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	6e-06
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	5e-06
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	6e-06
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	5e-06
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	3e-05
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	5e-06
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	8e-06
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	5e-06
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	5e-06
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	6e-06
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-06
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-05
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	6e-06
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	7e-06
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	6e-06
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	2e-05
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	6e-06
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	6e-06
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	6e-05
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	7e-06
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	4e-05
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	7e-06
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	9e-06
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	7e-06
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	9e-06
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	7e-06
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	3e-05
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	7e-06
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-05
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	7e-06
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-05
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	8e-06
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	8e-05
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	8e-06
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-05
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	8e-06
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-05
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	8e-06
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	1e-04
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	8e-06
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-05
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	9e-06
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-05
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	9e-06
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-05
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-05
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-05
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-05
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-05
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	1e-05
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-05
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-05
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-05
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	4e-05
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-05
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-05
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	1e-05
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	3e-05
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	1e-05
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	2e-05
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	1e-05
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	1e-05
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	1e-05
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	2e-05
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	1e-05
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	5e-05
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-05
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	6e-05
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-05
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	6e-05
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	1e-05
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	1e-04
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	2e-05
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	1e-04
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	2e-05
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	7e-05
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	2e-05
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	4e-05
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	2e-05
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	2e-05
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-05
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-04
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-05
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	4e-05
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	2e-05
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	3e-04
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-05
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	5e-05
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	2e-05
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	3e-05
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	3e-05
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	5e-05
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-05
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	5e-05
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	4e-05
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	4e-05
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	4e-05
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	6e-05
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	4e-05
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	5e-05
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	6e-05
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	6e-05
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-04
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	7e-05
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	7e-05
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	9e-05
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	7e-05
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	8e-05
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	7e-05
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	8e-05
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	6e-04

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score =  107 bits (269), Expect = 1e-27
 Identities = 62/173 (35%), Positives = 84/173 (48%), Gaps = 13/173 (7%)

Query: 219 CEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTA 278
           C  C + F++ + L  H   H   K Y+C  C K++  K +LT H Q  H     EK   
Sbjct: 24  CPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRH-QRTHTG---EK--- 76

Query: 279 ILKREFICDVCGKSYVRKGALTEHHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGL 337
                + C  CGKS+ ++  L  H QR H G+KP  C  CGK       L  H  THTG 
Sbjct: 77  ----PYKCPECGKSFSQRANLRAH-QRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGE 131

Query: 338 KPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
           KP+ C  CG+S+S    L  H   HTGE  + C  C + F +R +  +H +TH
Sbjct: 132 KPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 92.9 bits (232), Expect = 2e-22
 Identities = 55/148 (37%), Positives = 72/148 (48%), Gaps = 13/148 (8%)

Query: 219 CEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTA 278
           C  C + F+ K+ L  H   H   K Y+C  C K++  + NL  H Q  H     EK   
Sbjct: 52  CPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAH-QRTHTG---EK--- 104

Query: 279 ILKREFICDVCGKSYVRKGALTEHHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGL 337
                + C  CGKS+ +   L  H QR H G+KP  C  CGK    + +L  H  THTG 
Sbjct: 105 ----PYACPECGKSFSQLAHLRAH-QRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGE 159

Query: 338 KPHCCEICGRSYSTAAYLKVHMSCHTGE 365
           KP+ C  CG+S+S    L VH   HTG+
Sbjct: 160 KPYKCPECGKSFSRRDALNVHQRTHTGK 187

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 79.0 bits (196), Expect = 2e-17
 Identities = 36/100 (36%), Positives = 46/100 (46%), Gaps = 2/100 (2%)

Query: 292 SYVRKGALTEHHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYS 350
           S     +          G+KP  C  CGK       LA H  THTG KP+ C  CG+S+S
Sbjct: 2   SEFGSSSSVAQ-AALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFS 60

Query: 351 TAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
               L  H   HTGE  + C  C + F QR++   H +TH
Sbjct: 61  DKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTH 100

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 72.9 bits (180), Expect = 2e-15
 Identities = 60/183 (32%), Positives = 78/183 (42%), Gaps = 20/183 (10%)

Query: 160 CHYCNRTFDSKAKIQEH--IISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANL 217
           C  C ++F     + EH      H  EK Y+C  CG     K     H R     KP   
Sbjct: 24  CPECGKSFSRSDHLAEHQRT---HTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYK- 79

Query: 218 SCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRT 277
            C  C + F+++  LR+H   H   K Y C  C K++    +L  H Q  H     EK  
Sbjct: 80  -CPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAH-QRTHTG---EK-- 132

Query: 278 AILKREFICDVCGKSYVRKGALTEHHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTG 336
                 + C  CGKS+ R+  L  H QR H G+KP  C  CGK    + +L  H  THTG
Sbjct: 133 -----PYKCPECGKSFSREDNLHTH-QRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTG 186

Query: 337 LKP 339
            K 
Sbjct: 187 KKT 189

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 86.4 bits (215), Expect = 6e-21
 Identities = 36/107 (33%), Positives = 49/107 (45%), Gaps = 6/107 (5%)

Query: 289 CGKSYVRKGALTEHHQREHQGKKP-VCTI--CGKMLIDKRSLANHMNTHTGLKPHCCEIC 345
           C K Y +   L  H  R+H G+KP  C    C +       L  H   HTG+KP  C+ C
Sbjct: 14  CNKRYFKLSHLQMH-SRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTC 72

Query: 346 GRSYSTAAYLKVHMSCHTGETSHTCHL--CPQKFRQRSSYTLHYKTH 390
            R +S + +LK H   HTGE   +C    C +KF +      H+  H
Sbjct: 73  QRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 84.9 bits (211), Expect = 2e-20
 Identities = 35/110 (31%), Positives = 50/110 (45%), Gaps = 6/110 (5%)

Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP-VCTICGKMLIDKRSLANHM---NTHTGLKPHC 341
           C  C K ++ K  L   H R+H G+KP  C  CGK    K +L  H      +   +   
Sbjct: 10  CPTCHKKFLSKYYLK-VHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68

Query: 342 CEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLH-YKTH 390
           C +C  ++     L++HM  HTGE  + C  C Q+F Q+     H  K H
Sbjct: 69  CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 50.6 bits (122), Expect = 4e-08
 Identities = 15/53 (28%), Positives = 24/53 (45%)

Query: 334 HTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLH 386
            +G     C  C + + +  YLKVH   HTGE    C  C + + ++ +   H
Sbjct: 2   SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH 54

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 47.9 bits (115), Expect = 3e-07
 Identities = 28/134 (20%), Positives = 48/134 (35%), Gaps = 16/134 (11%)

Query: 181 HMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHLAVHK 240
                  +C  C  +  +K     H R     KP    C  C + + +KE L  H A + 
Sbjct: 2   SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKP--FECPKCGKCYFRKENLLEHEARNC 59

Query: 241 I--G-KNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKG 297
           +    + + C  C++T+  +  L  H    H     E         + C  C + +++K 
Sbjct: 60  MNRSEQVFTCSVCQETFRRRMELRLH-MVSHTG---EM-------PYKCSSCSQQFMQKK 108

Query: 298 ALTEHHQREHQGKK 311
            L  H  + H G  
Sbjct: 109 DLQSHMIKLHSGPS 122

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 84.2 bits (209), Expect = 1e-19
 Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 22/162 (13%)

Query: 243 KNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCG-----KSYVRKG 297
            + +   C + +  +  L +HI + H+  E        ++EF+C   G     + +  + 
Sbjct: 2   TDCRWDGCSQEFDSQEQLVHHINSEHIHGE--------RKEFVCHWGGCSRELRPFKAQY 53

Query: 298 ALTEHHQREHQGKKP-VCTI--CGKMLIDKRSLANHMNTHTGLKPHCCE--ICGRSYSTA 352
            L   H R H G+KP  CT   C K      +L  H+ +HTG KP+ CE   C +++S A
Sbjct: 54  MLV-VHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNA 112

Query: 353 AYLKVHMSC-HTGETSHTCHL--CPQKFRQRSSYTLHYKTHH 391
           +    H +  H+ E  + C L  C +++   SS   H KT H
Sbjct: 113 SDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 78.8 bits (195), Expect = 1e-17
 Identities = 42/162 (25%), Positives = 66/162 (40%), Gaps = 28/162 (17%)

Query: 219 CEFCSRIFTKKELLRSHLAVHKIG---KNYQCYYCRKTYCHKP-----NLTNHIQNVHLK 270
            + CS+ F  +E L  H+    I    K + C++   +   +P      L  H+      
Sbjct: 6   WDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHM------ 59

Query: 271 SELEKRTAILKREFICDV--CGKSYVRKGALTEHHQREHQGKKP-VCT--ICGKMLIDKR 325
                R    ++   C    C KSY R   L  H  R H G+KP +C    C K   +  
Sbjct: 60  -----RRHTGEKPHKCTFEGCRKSYSRLENLKTH-LRSHTGEKPYMCEHEGCSKAFSNAS 113

Query: 326 SLANHMN-THTGLKPHCCEI--CGRSYSTAAYLKVHMSCHTG 364
             A H N TH+  KP+ C++  C + Y+  + L+ H+    G
Sbjct: 114 DRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 71.1 bits (175), Expect = 4e-15
 Identities = 47/188 (25%), Positives = 74/188 (39%), Gaps = 45/188 (23%)

Query: 158 CVCHYCNRTFDSKAKIQEHIISSHMH--EKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPA 215
           C    C++ FDS+ ++  HI S H+H   K + C + G                      
Sbjct: 4   CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGG---------------------- 41

Query: 216 NLSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYY--CRKTYCHKPNLTNHIQNVHLKSEL 273
              C    R F  + +L  H+  H   K ++C +  CRK+Y    NL  H          
Sbjct: 42  ---CSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTH---------- 88

Query: 274 EKRTAILKREFIC--DVCGKSYVRKGALTEHHQREHQGKKP-VCTI--CGKMLIDKRSLA 328
             R+   ++ ++C  + C K++       +H  R H  +KP VC +  C K   D  SL 
Sbjct: 89  -LRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLR 147

Query: 329 NHMNTHTG 336
            H+ T  G
Sbjct: 148 KHVKTVHG 155

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 81.8 bits (203), Expect = 3e-19
 Identities = 35/107 (32%), Positives = 50/107 (46%), Gaps = 7/107 (6%)

Query: 289 CGKSYVRKGALTEHHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCEI--C 345
           C K +    A+ +H    H G +  VC  CGK  ++   L  H   HTG KP  C    C
Sbjct: 13  CTKMFRDNSAMRKH-LHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGC 70

Query: 346 GRSYSTAAYLKVHMSCHTGETSHTCHL--CPQKFRQRSSYTLHYKTH 390
           G+ +S    L+ H+  HTG+  + C    C +KF Q ++   H  TH
Sbjct: 71  GKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 71.4 bits (176), Expect = 2e-15
 Identities = 34/130 (26%), Positives = 53/130 (40%), Gaps = 20/130 (15%)

Query: 243 KNYQCYY--CRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGALT 300
           +   C +  C K +     +  H  + H      +         +C  CGK++V    L 
Sbjct: 4   RTIACPHKGCTKMFRDNSAMRKH-LHTHG----PRV-------HVCAECGKAFVESSKLK 51

Query: 301 EHHQREHQGKKP-VCTI--CGKMLIDKRSLANHMNTHTGLKPHCCEI--CGRSYSTAAYL 355
            H Q  H G+KP  CT   CGK      +L  H+  HTG +P+ C    C + ++ +  L
Sbjct: 52  RH-QLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNL 110

Query: 356 KVHMSCHTGE 365
           K H+  H   
Sbjct: 111 KSHILTHAKA 120

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 57.9 bits (141), Expect = 9e-11
 Identities = 37/134 (27%), Positives = 52/134 (38%), Gaps = 20/134 (14%)

Query: 213 KPANLSCEFCSRIFTKKELLRSHLAVHKIG-KNYQCYYCRKTYCHKPNLTNHIQNVHLKS 271
           +      + C+++F     +R HL  H  G + + C  C K +     L  H Q VH   
Sbjct: 4   RTIACPHKGCTKMFRDNSAMRKHLHTH--GPRVHVCAECGKAFVESSKLKRH-QLVHTG- 59

Query: 272 ELEKRTAILKREFICDV--CGKSYVRKGALTEHHQREHQGKKP-VCTI--CGKMLIDKRS 326
             EK        F C    CGK +     L   H R H G +P VC    C K      +
Sbjct: 60  --EK-------PFQCTFEGCGKRFSLDFNLR-THVRIHTGDRPYVCPFDGCNKKFAQSTN 109

Query: 327 LANHMNTHTGLKPH 340
           L +H+ TH   K +
Sbjct: 110 LKSHILTHAKAKNN 123

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 82.7 bits (205), Expect = 4e-19
 Identities = 40/154 (25%), Positives = 60/154 (38%), Gaps = 8/154 (5%)

Query: 222 CSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILK 281
                   +   S   + +   +     C +T+     L  H+   H      ++   + 
Sbjct: 3   SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEH--VGGPEQNNHVC 60

Query: 282 REFICDVCGKSYVRKGALTEHHQREHQGKKP-VCTI--CGKMLIDKRSLANHMNTHTGLK 338
               C   GKS+  K  L  +H R H G+KP  C    CGK+     +L  H  THTG K
Sbjct: 61  YWEECPREGKSFKAKYKLV-NHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEK 119

Query: 339 PHCCEI--CGRSYSTAAYLKVHMSCHTGETSHTC 370
           P  CE   C R ++ ++  K HM  HT + S   
Sbjct: 120 PFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPS 153

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 81.9 bits (203), Expect = 7e-19
 Identities = 36/138 (26%), Positives = 49/138 (35%), Gaps = 16/138 (11%)

Query: 268 HLKSELE-KRTAILKREFICDVCGKSYVRKGALTEHHQREHQGKKP----------VCTI 316
            +K EL  K     +       C +++     L   H        P           C  
Sbjct: 9   PIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELV-THVTMEHVGGPEQNNHVCYWEECPR 67

Query: 317 CGKMLIDKRSLANHMNTHTGLKPHCCEI--CGRSYSTAAYLKVHMSCHTGETSHTCHL-- 372
            GK    K  L NH+  HTG KP  C    CG+ ++ +  LK+H   HTGE    C    
Sbjct: 68  EGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEG 127

Query: 373 CPQKFRQRSSYTLHYKTH 390
           C ++F   S    H   H
Sbjct: 128 CDRRFANSSDRKKHMHVH 145

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 70.4 bits (173), Expect = 8e-15
 Identities = 21/115 (18%), Positives = 36/115 (31%), Gaps = 14/115 (12%)

Query: 290 GKSYVRKGALTEH--HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHC----- 341
           G S      + +    +   + +       C +       L  H+       P       
Sbjct: 1   GSSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC 60

Query: 342 ----CEICGRSYSTAAYLKVHMSCHTGETSHTCHL--CPQKFRQRSSYTLHYKTH 390
               C   G+S+     L  H+  HTGE    C    C + F +  +  +H +TH
Sbjct: 61  YWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTH 115

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 31/152 (20%), Positives = 53/152 (34%), Gaps = 33/152 (21%)

Query: 120 KLYECSLCNESFENKKVLFRHLRGKHGMKIKLSRHKTKCV-CHYCNRTFDSKAKIQEHII 178
                  C+ +F     L  H+  +H    + + H      C    ++F +K K+  H I
Sbjct: 24  LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNH-I 82

Query: 179 SSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHLAV 238
             H  EK + C F G                            C +IF + E L+ H   
Sbjct: 83  RVHTGEKPFPCPFPG----------------------------CGKIFARSENLKIHKRT 114

Query: 239 HKIGKNYQCYY--CRKTYCHKPNLTNHIQNVH 268
           H   K ++C +  C + + +  +   H  +VH
Sbjct: 115 HTGEKPFKCEFEGCDRRFANSSDRKKH-MHVH 145

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 77.8 bits (193), Expect = 4e-18
 Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 2/86 (2%)

Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCEI 344
           C+VCGK + RK  L  H  R H G KP  C  C     D  SL  H+  H+  +P  C+I
Sbjct: 11  CEVCGKCFSRKDKLKTH-MRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69

Query: 345 CGRSYSTAAYLKVHMSCHTGETSHTC 370
           C  +   ++ L VH+  HTG++  + 
Sbjct: 70  CPYASRNSSQLTVHLRSHTGDSGPSS 95

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 73.6 bits (182), Expect = 1e-16
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 307 HQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGE 365
                P  C +CGK    K  L  HM  HTG+KP+ C+ C  + + ++ L  H+  H+ E
Sbjct: 3   SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE 62

Query: 366 TSHTCHLCPQKFRQRSSYTLHYKTH 390
               C +CP   R  S  T+H ++H
Sbjct: 63  RPFKCQICPYASRNSSQLTVHLRSH 87

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 58.6 bits (143), Expect = 3e-11
 Identities = 21/58 (36%), Positives = 27/58 (46%)

Query: 333 THTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
           +     PH CE+CG+ +S    LK HM CHTG   + C  C       SS   H + H
Sbjct: 2   SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIH 59

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 45.9 bits (110), Expect = 8e-07
 Identities = 25/125 (20%), Positives = 39/125 (31%), Gaps = 41/125 (32%)

Query: 219 CEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTA 278
           CE C + F++K+ L++H+  H   K Y+C  C        +L                  
Sbjct: 11  CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNK---------------- 54

Query: 279 ILKREFICDVCGKSYVRKGALTEHHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGL 337
                                   H R H  ++P  C IC     +   L  H+ +HTG 
Sbjct: 55  ------------------------HLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGD 90

Query: 338 KPHCC 342
                
Sbjct: 91  SGPSS 95

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 80.7 bits (200), Expect = 5e-18
 Identities = 44/181 (24%), Positives = 62/181 (34%), Gaps = 23/181 (12%)

Query: 222 CSRIFTKKELLRSHLAVHKIGKNYQC--YYCRKTYCHKPNLTNHIQNVHLKSELEKRTAI 279
           C   + K   L++HL  H   K + C    C K +    +LT H             T  
Sbjct: 20  CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRH-----------SLTHT 68

Query: 280 LKREFICD--VCGKSYVRKGALTEHHQREHQGKKP---VCTI--CGKMLIDKRSLANHMN 332
            ++ F CD   C   +  K  + +H        K    VC    CGK       L  H  
Sbjct: 69  GEKNFTCDSDGCDLRFTTKANMKKH-FNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQF 127

Query: 333 THTGLKPHCC--EICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
           +HT   P+ C  E C + +S  + LK H   H G        C    +  + Y  H    
Sbjct: 128 SHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAEC 187

Query: 391 H 391
           H
Sbjct: 188 H 188

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 69.2 bits (170), Expect = 5e-14
 Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 7/96 (7%)

Query: 303 HQREHQGKKP-VCTI--CGKMLIDKRSLANHMNTHTGLKPHCCE--ICGRSYSTAAYLKV 357
            +      K  +C+   CG        L  H+  HTG KP  C+   C + +++  +L  
Sbjct: 3   EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTR 62

Query: 358 HMSCHTGETSHTC--HLCPQKFRQRSSYTLHYKTHH 391
           H   HTGE + TC    C  +F  +++   H+   H
Sbjct: 63  HSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFH 98

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 51.4 bits (124), Expect = 6e-08
 Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 4/66 (6%)

Query: 329 NHMNTHTGLKPHCCEI--CGRSYSTAAYLKVHMSCHTGETSHTCH--LCPQKFRQRSSYT 384
                    K + C    CG +Y+    L+ H+  HTGE    C    C + F      T
Sbjct: 2   GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLT 61

Query: 385 LHYKTH 390
            H  TH
Sbjct: 62  RHSLTH 67

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 49/202 (24%), Positives = 64/202 (31%), Gaps = 36/202 (17%)

Query: 120 KLYECSL--CNESFENKKVLFRHLRGKHGMKIKLSRHKT-----KCVCHYCNRTFDSKAK 172
           K Y CS   C  ++     L  HL  KH          T      C    C + F S   
Sbjct: 11  KRYICSFADCGAAYNKNWKLQAHLC-KH----------TGEKPFPCKEEGCEKGFTSLHH 59

Query: 173 IQEHIISSHMHEKLYQCD--FCGSQQRTKCRFYYHLRDKHLSKPANLSCEF--CSRIFTK 228
           +  H ++ H  EK + CD   C  +  TK     H    H  K     C F  C + F K
Sbjct: 60  LTRHSLT-HTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKK 118

Query: 229 KELLRSHLAVHKIGKNYQC--YYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFIC 286
              L+ H   H     Y+C    C K +     L  H + VH     +K           
Sbjct: 119 HNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH-EKVHAGYPCKK----------D 167

Query: 287 DVCGKSYVRKGALTEHHQREHQ 308
           D C           +H    HQ
Sbjct: 168 DSCSFVGKTWTLYLKHVAECHQ 189

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 77.1 bits (191), Expect = 1e-17
 Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 4/97 (4%)

Query: 289 CGKSYVRKGALTEHHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGR 347
           CGKS+  K     H    H G +P  C +CGK    K  L  HM  HTG+KP+ C IC +
Sbjct: 15  CGKSFTHKSQRDRH-MSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAK 73

Query: 348 SYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYT 384
            +        H    +   S+      Q   + S  +
Sbjct: 74  RFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEASGPS 108

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 67.1 bits (165), Expect = 4e-14
 Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 2/86 (2%)

Query: 305 REHQGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTG 364
               G K     CGK    K     HM+ H GL+P+ C +CG+ +    +L  HM  HTG
Sbjct: 3   SGSSGDKLYPCQCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTG 62

Query: 365 ETSHTCHLCPQKFRQRSSYTLHYKTH 390
              + C++C ++F  R S   H    
Sbjct: 63  IKPYECNICAKRFMWRDS--FHRHVT 86

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 61.7 bits (151), Expect = 4e-12
 Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 16/114 (14%)

Query: 243 KNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGALTEH 302
           K Y C  C K++ HK     H  ++HL     +        + C VCGK +  K  L   
Sbjct: 9   KLYPCQ-CGKSFTHKSQRDRH-MSMHLG---LR-------PYGCGVCGKKFKMKHHLV-G 55

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYL 355
           H + H G KP  C IC K  + + S   H +  +  K +      ++ + A+  
Sbjct: 56  HMKIHTGIKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEASGP 107

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 49.4 bits (119), Expect = 8e-08
 Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 16/112 (14%)

Query: 219 CEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTA 278
           C+ C + FT K     H+++H   + Y C  C K +  K +L  H   +H      K   
Sbjct: 13  CQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGH-MKIHTG---IK--- 64

Query: 279 ILKREFICDVCGKSYVRKGALTEHHQREHQGKKP-VCTICGKMLIDKRSLAN 329
                + C++C K ++ + +    H+      K        +   +    ++
Sbjct: 65  ----PYECNICAKRFMWRDSF---HRHVTSCTKSYEAAKAEQNTTEASGPSS 109

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 76.4 bits (189), Expect = 1e-17
 Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 289 CGKSYVRKGALTEHHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGR 347
           C + + + G+LT  H R H G+KP  C IC +       L  H+ THTG KP  C+ICGR
Sbjct: 12  CDRRFSQSGSLT-RHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70

Query: 348 SYSTAAYLKVHMSCHTGE 365
            ++ +   K H   H  +
Sbjct: 71  KFARSDERKRHTKIHLRQ 88

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 71.7 bits (177), Expect = 5e-16
 Identities = 27/74 (36%), Positives = 37/74 (50%)

Query: 317 CGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQK 376
           C +      SL  H+  HTG KP  C IC R++S + +L  H+  HTGE    C +C +K
Sbjct: 12  CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71

Query: 377 FRQRSSYTLHYKTH 390
           F +      H K H
Sbjct: 72  FARSDERKRHTKIH 85

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 51.7 bits (125), Expect = 7e-09
 Identities = 26/99 (26%), Positives = 38/99 (38%), Gaps = 15/99 (15%)

Query: 243 KNYQCYY--CRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGALT 300
           + Y C    C + +    +LT H            R    ++ F C +C +++ R   LT
Sbjct: 3   RPYACPVESCDRRFSQSGSLTRH-----------IRIHTGQKPFQCRICMRNFSRSDHLT 51

Query: 301 EHHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLK 338
            H  R H G+KP  C ICG+          H   H   K
Sbjct: 52  TH-IRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 41.7 bits (99), Expect = 2e-05
 Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 12/99 (12%)

Query: 213 KPANLSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSE 272
           +P     E C R F++   L  H+ +H   K +QC  C + +    +LT H         
Sbjct: 3   RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH--------- 53

Query: 273 LEKRTAILKREFICDVCGKSYVRKGALTEHHQREHQGKK 311
              RT   ++ F CD+CG+ + R       H + H  +K
Sbjct: 54  --IRTHTGEKPFACDICGRKFARSDERKR-HTKIHLRQK 89

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 76.3 bits (189), Expect = 2e-17
 Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 2/88 (2%)

Query: 284 FICDVCGKSYVRKGALTEHHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
           FIC  CG+ + +   L   H+R H  ++P  C IC K    +  L +H   H+  KP  C
Sbjct: 18  FICKFCGRHFTKSYNLL-IHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKC 76

Query: 343 EICGRSYSTAAYLKVHMSCHTGETSHTC 370
           + CG+ +  +  L VH + H   +S T 
Sbjct: 77  QECGKGFCQSRTLAVHKTLHMQTSSPTA 104

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 75.9 bits (188), Expect = 3e-17
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 1/89 (1%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSC 361
            +   + KK  +C  CG+      +L  H  THT  +P+ C+IC +++    +L+ H   
Sbjct: 8   GRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYI 67

Query: 362 HTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
           H+ E    C  C + F Q  +  +H   H
Sbjct: 68  HSKEKPFKCQECGKGFCQSRTLAVHKTLH 96

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 40.9 bits (97), Expect = 5e-05
 Identities = 30/132 (22%), Positives = 42/132 (31%), Gaps = 42/132 (31%)

Query: 181 HMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHLAVHK 240
              +K + C FCG                              R FTK   L  H   H 
Sbjct: 12  SKTKKEFICKFCG------------------------------RHFTKSYNLLIHERTHT 41

Query: 241 IGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGALT 300
             + Y C  C K +  + +L +H + +H K   EK        F C  CGK + +   L 
Sbjct: 42  DERPYTCDICHKAFRRQDHLRDH-RYIHSK---EK-------PFKCQECGKGFCQSRTLA 90

Query: 301 EHHQREHQGKKP 312
             H+  H     
Sbjct: 91  V-HKTLHMQTSS 101

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 72.9 bits (180), Expect = 2e-16
 Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 3/90 (3%)

Query: 307 HQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGE 365
             G     C ICGK+  D   L  H  +H+G KP+ C +CG  +     +  H+  H G 
Sbjct: 2   SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61

Query: 366 TS--HTCHLCPQKFRQRSSYTLHYKTHHPG 393
               + C  C + F +      H K  H G
Sbjct: 62  VGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 69.4 bits (171), Expect = 4e-15
 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 5/88 (5%)

Query: 284 FICDVCGKSYVRKGALTEHHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTG--LKPH 340
             C++CGK +     L   H+  H G+KP  C +CG     K  ++ H+ +H G   KP+
Sbjct: 8   VACEICGKIFRDVYHLN-RHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPY 66

Query: 341 CCEICGRSYSTAAYLKVHM-SCHTGETS 367
            C+ CG+ +S   +L  H+   H+G +S
Sbjct: 67  ICQSCGKGFSRPDHLNGHIKQVHSGPSS 94

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 51.0 bits (123), Expect = 1e-08
 Identities = 25/93 (26%), Positives = 35/93 (37%), Gaps = 9/93 (9%)

Query: 219 CEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTA 278
           CE C +IF     L  H   H   K Y C  C   +  K  ++ H    H          
Sbjct: 10  CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYH-VRSH--------DG 60

Query: 279 ILKREFICDVCGKSYVRKGALTEHHQREHQGKK 311
            + + +IC  CGK + R   L  H ++ H G  
Sbjct: 61  SVGKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 70.1 bits (172), Expect = 1e-15
 Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 3/67 (4%)

Query: 334 HTGLKPHCCEICGRSYSTAAYLKVHMSCHT---GETSHTCHLCPQKFRQRSSYTLHYKTH 390
            +G     CEICG +    A L  H   H          C  C ++F +  S   H    
Sbjct: 2   SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61

Query: 391 HPGVIPP 397
           HP ++  
Sbjct: 62  HPALLLA 68

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 62.4 bits (152), Expect = 7e-13
 Identities = 16/74 (21%), Positives = 19/74 (25%), Gaps = 4/74 (5%)

Query: 307 HQGKKP-VCTICGKMLIDKRSLANHMNTHT---GLKPHCCEICGRSYSTAAYLKVHMSCH 362
             G     C ICG     K SL  H   H          CE CG+ +     +  H S  
Sbjct: 2   SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61

Query: 363 TGETSHTCHLCPQK 376
                         
Sbjct: 62  HPALLLAPQESSGP 75

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 53.2 bits (128), Expect = 2e-09
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 6/70 (8%)

Query: 284 FICDVCGKSYVRKGALTEHHQREH---QGKKP-VCTICGKMLIDKRSLANHMNT-HTGLK 338
             C++CG +  +K +L  H QR+H          C  CGK      S+A H +  H  L 
Sbjct: 8   LQCEICGFTCRQKASLNWH-QRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALL 66

Query: 339 PHCCEICGRS 348
               E  G S
Sbjct: 67  LAPQESSGPS 76

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 48.6 bits (116), Expect = 8e-08
 Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 8/72 (11%)

Query: 243 KNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGALTEH 302
              QC  C  T   K +L  H Q  H ++    R       F C+ CGK + +  ++  H
Sbjct: 6   SGLQCEICGFTCRQKASLNWH-QRKHAETVAALR-------FPCEFCGKRFEKPDSVAAH 57

Query: 303 HQREHQGKKPVC 314
             + H       
Sbjct: 58  RSKSHPALLLAP 69

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 3/66 (4%)

Query: 184 EKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANL--SCEFCSRIFTKKELLRSHLAVHKI 241
               QC+ CG   R K    +H R KH    A L   CEFC + F K + + +H +    
Sbjct: 5   SSGLQCEICGFTCRQKASLNWHQR-KHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHP 63

Query: 242 GKNYQC 247
                 
Sbjct: 64  ALLLAP 69

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 40.1 bits (94), Expect = 7e-05
 Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 5/59 (8%)

Query: 213 KPANLSCEFCSRIFTKKELLRSHLAVHKIG---KNYQCYYCRKTYCHKPNLTNHIQNVH 268
               L CE C     +K  L  H   H        + C +C K +    ++  H    H
Sbjct: 6   SG--LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 69.1 bits (170), Expect = 3e-15
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 326 SLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETS--HTCHLCPQKFRQRSSY 383
           S  +   TH+G KP+ C IC   ++ +  +K+H+     E      C  C     ++S  
Sbjct: 2   SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61

Query: 384 TLHYKTHHPG 393
            +H +  H  
Sbjct: 62  GVHLRKQHSY 71

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 63.3 bits (155), Expect = 4e-13
 Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 4/67 (5%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTG--LKPHCCEICGRSYSTAAYLKVHM 359
             R H G+KP  C IC        ++  H+       +    C  C    +  + L VH+
Sbjct: 6   SGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHL 65

Query: 360 -SCHTGE 365
              H+  
Sbjct: 66  RKQHSYS 72

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 47.9 bits (115), Expect = 1e-07
 Identities = 18/81 (22%), Positives = 25/81 (30%), Gaps = 9/81 (11%)

Query: 232 LRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGK 291
             S    H   K Y+CY C   +     +  HI                  +F C  C  
Sbjct: 3   SGSSGRTHSGEKPYECYICHARFTQSGTMKMHIL-QK--------HTENVAKFHCPHCDT 53

Query: 292 SYVRKGALTEHHQREHQGKKP 312
              RK  L  H +++H    P
Sbjct: 54  VIARKSDLGVHLRKQHSYSGP 74

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 46.4 bits (111), Expect = 4e-07
 Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 5/62 (8%)

Query: 284 FICDVCGKSYVRKGALTEHHQREHQG--KKP-VCTICGKMLIDKRSLANHM-NTHTGLKP 339
           + C +C   + + G +  H   +          C  C  ++  K  L  H+   H+   P
Sbjct: 16  YECYICHARFTQSGTMKMH-ILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGP 74

Query: 340 HC 341
             
Sbjct: 75  SS 76

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 42.5 bits (101), Expect = 8e-06
 Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 218 SCEFCSRIFTKKELLRSHLAVH--KIGKNYQCYYCRKTYCHKPNLTNHIQNVH 268
            C  C   FT+   ++ H+     +    + C +C      K +L  H++  H
Sbjct: 17  ECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 41.4 bits (98), Expect = 2e-05
 Identities = 9/43 (20%), Positives = 17/43 (39%)

Query: 355 LKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP 397
                  H+GE  + C++C  +F Q  +  +H    H   +  
Sbjct: 3   SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAK 45

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 69.4 bits (171), Expect = 4e-15
 Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 2/80 (2%)

Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCEI 344
           C +CGKS+ R   L+  H   H   +P  C  CGK    K  +  H   HTG KPH C++
Sbjct: 4   CKICGKSFKRSSTLS-THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQV 62

Query: 345 CGRSYSTAAYLKVHMSCHTG 364
           CG+++S ++ L  H   HTG
Sbjct: 63  CGKAFSQSSNLITHSRKHTG 82

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 64.4 bits (158), Expect = 2e-13
 Identities = 26/77 (33%), Positives = 41/77 (53%)

Query: 314 CTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC 373
           C ICGK      +L+ H+  H+  +P+ C+ CG+ +   + +K H   HTGE  H C +C
Sbjct: 4   CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63

Query: 374 PQKFRQRSSYTLHYKTH 390
            + F Q S+   H + H
Sbjct: 64  GKAFSQSSNLITHSRKH 80

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 39.3 bits (93), Expect = 1e-04
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 12/91 (13%)

Query: 219 CEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTA 278
           C+ C + F +   L +HL +H   + Y C YC K +  K ++  H   +H     EK   
Sbjct: 4   CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH-TFIHTG---EK--- 56

Query: 279 ILKREFICDVCGKSYVRKGALTEHHQREHQG 309
                  C VCGK++ +   L   H R+H G
Sbjct: 57  ----PHKCQVCGKAFSQSSNLIT-HSRKHTG 82

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 65.2 bits (160), Expect = 8e-14
 Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 302 HHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMS 360
           HH       KP  C  C      K +LA+H   HTG KP+ C ICG  ++  A LK H  
Sbjct: 7   HHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR 66

Query: 361 CHTGE 365
            H+GE
Sbjct: 67  IHSGE 71

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 60.2 bits (147), Expect = 4e-12
 Identities = 17/65 (26%), Positives = 31/65 (47%)

Query: 326 SLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTL 385
              +H +     KP+ C+ C  S+     L  H + HTGE  + C++C  +F + ++   
Sbjct: 4   HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKT 63

Query: 386 HYKTH 390
           H + H
Sbjct: 64  HTRIH 68

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 51.7 bits (125), Expect = 4e-09
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPH 340
           CD C  S+  KG L  H +  H G+KP  C ICG       +L  H   H+G KP+
Sbjct: 20  CDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY 74

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 43.2 bits (103), Expect = 4e-06
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 16/85 (18%)

Query: 232 LRSHLAVHKI----GKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICD 287
           +  H   H       K Y+C  C+ ++ +K NL +H           K     ++ + C+
Sbjct: 1   MGHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASH-----------KTVHTGEKPYRCN 49

Query: 288 VCGKSYVRKGALTEHHQREHQGKKP 312
           +CG  + R   L   H R H G+KP
Sbjct: 50  ICGAQFNRPANLKT-HTRIHSGEKP 73

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 65.0 bits (159), Expect = 2e-13
 Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 5/90 (5%)

Query: 303 HQREHQGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCC--EICGRSYSTAAYLKVHMS 360
            +R H    P C    K+      L  H+ THTG KP+ C  E C   ++ +  L  H  
Sbjct: 12  KRRIHYCDYPGC---TKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYR 68

Query: 361 CHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
            HTG     C +C + F +     LH K H
Sbjct: 69  KHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 62.6 bits (153), Expect = 1e-12
 Identities = 32/88 (36%), Positives = 40/88 (45%), Gaps = 6/88 (6%)

Query: 281 KREFICDV--CGKSYVRKGALTEHHQREHQGKKP-VCTI--CGKMLIDKRSLANHMNTHT 335
           +R   CD   C K Y +   L  H  R H G+KP  CT   C         L  H   HT
Sbjct: 13  RRIHYCDYPGCTKVYTKSSHLKAH-LRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHT 71

Query: 336 GLKPHCCEICGRSYSTAAYLKVHMSCHT 363
           G KP  C +C RS+S + +L +HM  H 
Sbjct: 72  GAKPFQCGVCNRSFSRSDHLALHMKRHQ 99

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 63.3 bits (155), Expect = 5e-13
 Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 5/76 (6%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTG----LKPHCCEICGRSYSTAAYLKV 357
             R H G+KP  C+ C K    K+ L  H   +           C  CG++++    +  
Sbjct: 6   SGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMAR 65

Query: 358 HMSCHTGETSHTCHLC 373
           H     G         
Sbjct: 66  HADNCAGPDGVEGENS 81

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 60.2 bits (147), Expect = 6e-12
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 284 FICDVCGKSYVRKGALTEH---HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKP 339
           + C  C K++ +K  L  H   +   +      VC+ CGK    + ++A H +   G   
Sbjct: 16  YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDG 75

Query: 340 HCCEICGRSY 349
              E  G S 
Sbjct: 76  VEGENSGPSS 85

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 59.1 bits (144), Expect = 1e-11
 Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 4/69 (5%)

Query: 326 SLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETS----HTCHLCPQKFRQRS 381
           S  +   THTG KP+ C  C +++     L +H   +           C  C + F +R+
Sbjct: 2   SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61

Query: 382 SYTLHYKTH 390
           +   H    
Sbjct: 62  TMARHADNC 70

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 39.0 bits (92), Expect = 2e-04
 Identities = 13/44 (29%), Positives = 19/44 (43%)

Query: 355 LKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPPK 398
                  HTGE  + C  C + FRQ+    +H+K +H     P 
Sbjct: 3   SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPA 46

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 62.5 bits (153), Expect = 1e-12
 Identities = 19/80 (23%), Positives = 27/80 (33%), Gaps = 4/80 (5%)

Query: 314 CTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC 373
           C IC +       L  H+ THTG KP  C+ICGR ++ +   K H               
Sbjct: 6   CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH-ILPILEDKV 64

Query: 374 PQKFRQRSS---YTLHYKTH 390
            +   +           K  
Sbjct: 65  EELLSKNYHLENEVARLKKL 84

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 53.7 bits (130), Expect = 1e-09
 Identities = 19/55 (34%), Positives = 28/55 (50%)

Query: 337 LKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHH 391
           +KP  C IC R++S + +L  H+  HTGE    C +C +KF +      H    H
Sbjct: 1   MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH 55

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 45.6 bits (109), Expect = 9e-07
 Identities = 21/126 (16%), Positives = 36/126 (28%), Gaps = 43/126 (34%)

Query: 243 KNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGALTEH 302
           K +QC  C + +    +LT H            RT   ++ F CD+CG+ + R       
Sbjct: 2   KPFQCRICMRNFSRSDHLTTH-----------IRTHTGEKPFACDICGRKFARSD----- 45

Query: 303 HQREHQGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSC- 361
                                      H +      P   +      S   +L+  ++  
Sbjct: 46  -----------------------ERKRHRDIQHI-LPILEDKVEELLSKNYHLENEVARL 81

Query: 362 --HTGE 365
               GE
Sbjct: 82  KKLVGE 87

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 42.9 bits (102), Expect = 7e-06
 Identities = 14/95 (14%), Positives = 32/95 (33%), Gaps = 14/95 (14%)

Query: 219 CEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTA 278
           C  C R F++ + L +H+  H   K + C  C + +        H +++           
Sbjct: 6   CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH-RDIQ----HILP-- 58

Query: 279 ILKREFICDVCGKSYVRKGALTEH--HQREHQGKK 311
                 + D   +   +   L       ++  G++
Sbjct: 59  -----ILEDKVEELLSKNYHLENEVARLKKLVGER 88

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 62.2 bits (152), Expect = 1e-12
 Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 3/88 (3%)

Query: 306 EHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC--EICGRSYSTAAYLKVHMSCH 362
           +           CGK       L  H+ THTG KP+ C  + CG  ++ +  L  H   H
Sbjct: 1   KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH 60

Query: 363 TGETSHTCHLCPQKFRQRSSYTLHYKTH 390
           TG     C  C + F +     LH K H
Sbjct: 61  TGHRPFQCQKCDRAFSRSDHLALHMKRH 88

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 45.6 bits (109), Expect = 1e-06
 Identities = 30/127 (23%), Positives = 41/127 (32%), Gaps = 43/127 (33%)

Query: 239 HKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGA 298
                      C KTY          ++ HLK+                           
Sbjct: 2   RTATHTCDYAGCGKTY---------TKSSHLKA--------------------------- 25

Query: 299 LTEHHQREHQGKKP-VCTI--CGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYL 355
               H R H G+KP  C    CG        L  H   HTG +P  C+ C R++S + +L
Sbjct: 26  ----HLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHL 81

Query: 356 KVHMSCH 362
            +HM  H
Sbjct: 82  ALHMKRH 88

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 61.0 bits (149), Expect = 3e-12
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 5/73 (6%)

Query: 282 REFICDV--CGKSYVRKGALTEHHQREHQGKKP-VCT--ICGKMLIDKRSLANHMNTHTG 336
               CD   CG+ +  +  L  H + +H  +K   C    CGK    K+ L  HM  H+ 
Sbjct: 6   SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSD 65

Query: 337 LKPHCCEICGRSY 349
            + + CE  G S 
Sbjct: 66  TRDYICEFSGPSS 78

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 56.0 bits (136), Expect = 2e-10
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 6/73 (8%)

Query: 307 HQGKKP-VCTI--CGKMLIDKRSLANHM-NTHTGLKPHCCE--ICGRSYSTAAYLKVHMS 360
             G     C    CG++  +++ L +H    H   K   C    CG+S++   +LK HM 
Sbjct: 2   SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61

Query: 361 CHTGETSHTCHLC 373
            H+    + C   
Sbjct: 62  LHSDTRDYICEFS 74

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 49.5 bits (119), Expect = 3e-08
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 5/62 (8%)

Query: 334 HTGLKPHCCEI--CGRSYSTAAYLKVHM-SCHTGETSHTC--HLCPQKFRQRSSYTLHYK 388
            +G     C+   CGR +S   YL  H    H  + S +C    C + F  +     H K
Sbjct: 2   SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61

Query: 389 TH 390
            H
Sbjct: 62  LH 63

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 40.6 bits (96), Expect = 5e-05
 Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 16/82 (19%)

Query: 243 KNYQCYY--CRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICD--VCGKSYVRKGA 298
               C +  C + + ++  L +H +  H+    +K        F C    CGKS+  K  
Sbjct: 6   SGMPCDFPGCGRIFSNRQYLNHHKKYQHIH---QKS-------FSCPEPACGKSFNFKKH 55

Query: 299 LTEHHQREHQGKKP-VCTICGK 319
           L E H + H   +  +C   G 
Sbjct: 56  LKE-HMKLHSDTRDYICEFSGP 76

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 60.6 bits (148), Expect = 3e-12
 Identities = 15/67 (22%), Positives = 20/67 (29%), Gaps = 1/67 (1%)

Query: 305 REHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHT 363
                  P  C+ C      K +L  H   H   +P  C  C       + L  HM    
Sbjct: 2   SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH 61

Query: 364 GETSHTC 370
           G+ S   
Sbjct: 62  GDMSGPS 68

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 56.4 bits (137), Expect = 1e-10
 Identities = 16/59 (27%), Positives = 26/59 (44%)

Query: 333 THTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHH 391
           + +   P  C  C  S S+ A L++H   H  +    C+ C    +Q S+ + H K  H
Sbjct: 3   SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH 61

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 37.5 bits (88), Expect = 5e-04
 Identities = 14/76 (18%), Positives = 24/76 (31%), Gaps = 12/76 (15%)

Query: 237 AVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRK 296
           +    G   +C  C  +   K  L  H           +R     R F C+ C     + 
Sbjct: 2   SSGSSGHPEKCSECSYSCSSKAALRIH-----------ERIHCTDRPFKCNYCSFDTKQP 50

Query: 297 GALTEHHQREHQGKKP 312
             L++ H ++  G   
Sbjct: 51  SNLSK-HMKKFHGDMS 65

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 59.9 bits (146), Expect = 6e-12
 Identities = 21/77 (27%), Positives = 28/77 (36%), Gaps = 2/77 (2%)

Query: 317 CGKMLIDKRSLANHMNTHTGLKPHCC--EICGRSYSTAAYLKVHMSCHTGETSHTCHLCP 374
           CGK       L  H  +HT   P+ C  E C + +S  + LK H   H G        C 
Sbjct: 9   CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS 68

Query: 375 QKFRQRSSYTLHYKTHH 391
              +  + Y  H    H
Sbjct: 69  FVGKTWTLYLKHVAECH 85

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 51.5 bits (124), Expect = 8e-09
 Identities = 18/74 (24%), Positives = 24/74 (32%), Gaps = 4/74 (5%)

Query: 289 CGKSYVRKGALTEHHQREHQGKKP-VCT--ICGKMLIDKRSLANHMNTHTGLKPHCCEIC 345
           CGK++ +   L  H Q  H  + P  C    C K       L  H   H G      + C
Sbjct: 9   CGKAFKKHNQLKVH-QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSC 67

Query: 346 GRSYSTAAYLKVHM 359
                T      H+
Sbjct: 68  SFVGKTWTLYLKHV 81

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 58.6 bits (143), Expect = 2e-11
 Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSC 361
               H G+KP  C  CGK       L  H   HTG KP+ C  CG+++S  + L  H   
Sbjct: 5   SSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRI 64

Query: 362 HTGE 365
           HT  
Sbjct: 65  HTSG 68

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 55.6 bits (135), Expect = 2e-10
 Identities = 21/64 (32%), Positives = 32/64 (50%)

Query: 327 LANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLH 386
            +     H+G KP+ C  CG+++S ++ L  H   HTGE  + C  C + F Q S    H
Sbjct: 2   SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61

Query: 387 YKTH 390
            + H
Sbjct: 62  QRIH 65

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 51.3 bits (124), Expect = 6e-09
 Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 284 FICDVCGKSYVRKGALTEHHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPH 340
           + C  CGK++ R   L +H QR H G+KP  C  CGK       L NH   HT     
Sbjct: 15  YGCVECGKAFSRSSILVQH-QRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSS 71

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 40.1 bits (95), Expect = 5e-05
 Identities = 22/81 (27%), Positives = 28/81 (34%), Gaps = 12/81 (14%)

Query: 232 LRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGK 291
                 +H   K Y C  C K +     L  H Q VH     EK        + C  CGK
Sbjct: 2   SSGSSGIHSGEKPYGCVECGKAFSRSSILVQH-QRVHTG---EKP-------YKCLECGK 50

Query: 292 SYVRKGALTEHHQREHQGKKP 312
           ++ +   L   HQR H     
Sbjct: 51  AFSQNSGLIN-HQRIHTSGPS 70

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 58.6 bits (143), Expect = 2e-11
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSC 361
            + + + ++   C  CGK       L+ H  THTG KP+ C+ CG+++   ++L  H   
Sbjct: 9   SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRV 68

Query: 362 HTGE 365
           HTG 
Sbjct: 69  HTGS 72

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 56.7 bits (138), Expect = 7e-11
 Identities = 20/65 (30%), Positives = 31/65 (47%)

Query: 326 SLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTL 385
           S           + + C+ CG+S+S ++ L  H   HTGE  + C  C + F QRS    
Sbjct: 5   SSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIG 64

Query: 386 HYKTH 390
           H++ H
Sbjct: 65  HHRVH 69

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 49.4 bits (119), Expect = 3e-08
 Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 286 CDVCGKSYVRKGALTEHHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPH 340
           CD CGKS+     L++H +R H G+KP  C  CGK  I +  L  H   HTG  P 
Sbjct: 21  CDECGKSFSHSSDLSKH-RRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPS 75

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 39.7 bits (94), Expect = 9e-05
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 16/83 (19%)

Query: 234 SHLAVHKI----GKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVC 289
                 +      + Y+C  C K++ H  +L+ H +  H     EK        + CD C
Sbjct: 4   GSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKH-RRTHTG---EK-------PYKCDEC 52

Query: 290 GKSYVRKGALTEHHQREHQGKKP 312
           GK+++++  L   H R H G  P
Sbjct: 53  GKAFIQRSHLIG-HHRVHTGSGP 74

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 58.3 bits (142), Expect = 2e-11
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 333 THTGLKPHCCEICGRSYSTAAYLKVHM--SCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
           T  G   + C++C R Y+  +    H   S       + C  C ++F ++ + T H K  
Sbjct: 4   TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63

Query: 391 HP 392
           H 
Sbjct: 64  HK 65

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 52.2 bits (126), Expect = 3e-09
 Identities = 9/64 (14%), Positives = 23/64 (35%), Gaps = 3/64 (4%)

Query: 304 QREHQGKKP-VCTICGKMLIDKRSLANHMNT--HTGLKPHCCEICGRSYSTAAYLKVHMS 360
           +   +G+    C +C ++     +   H  T     +K + C  C + ++    +  H+ 
Sbjct: 2   EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61

Query: 361 CHTG 364
               
Sbjct: 62  IIHK 65

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 42.5 bits (101), Expect = 7e-06
 Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 2/56 (3%)

Query: 284 FICDVCGKSYVRKGALTEHHQ-REHQGKKP-VCTICGKMLIDKRSLANHMNTHTGL 337
           + C VC + Y        H+     +  K   C  C K    K ++  H+     +
Sbjct: 11  YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 37.9 bits (89), Expect = 3e-04
 Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 10/67 (14%)

Query: 243 KNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGALTEH 302
             Y+C  C + Y H  N   H    H ++          + + C  C K + RK  +T  
Sbjct: 9   HTYRCKVCSRVYTHISNFCRHYVTSHKRNV---------KVYPCPFCFKEFTRKDNMTA- 58

Query: 303 HQREHQG 309
           H +    
Sbjct: 59  HVKIIHK 65

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 42

 Score = 51.3 bits (124), Expect = 3e-09
 Identities = 14/40 (35%), Positives = 19/40 (47%)

Query: 330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHT 369
              +  G KP+ CEICG  +     LK H+  HTG    +
Sbjct: 2   SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 42

 Score = 42.1 bits (100), Expect = 5e-06
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPH 340
                 G+KP  C ICG      ++L +H+  HTG  P 
Sbjct: 2   SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 53.6 bits (128), Expect = 3e-09
 Identities = 22/81 (27%), Positives = 27/81 (33%), Gaps = 5/81 (6%)

Query: 284 FICDVCGKSYVRKGALTEH-----HQREHQGKKPVCTICGKMLIDKRSLANHMNTHTGLK 338
           F C  C  +Y     LT H     H R+   +             KRSL          K
Sbjct: 20  FRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQK 79

Query: 339 PHCCEICGRSYSTAAYLKVHM 359
              C  CG S+ +   L VHM
Sbjct: 80  VLKCMYCGHSFESLQDLSVHM 100

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 49.0 bits (116), Expect = 1e-07
 Identities = 20/100 (20%), Positives = 32/100 (32%), Gaps = 6/100 (6%)

Query: 232 LRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGK 291
            + + ++      ++C  C   Y     LT H+       E              +    
Sbjct: 7   GKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMN------ETGHYRDDNHETDNNNPKRW 60

Query: 292 SYVRKGALTEHHQREHQGKKPVCTICGKMLIDKRSLANHM 331
           S  RK +L E   +E   K   C  CG      + L+ HM
Sbjct: 61  SKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHM 100

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 47.8 bits (113), Expect = 3e-07
 Identities = 16/96 (16%), Positives = 21/96 (21%), Gaps = 7/96 (7%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMN-----THTGLKPHCCEICGRSYSTAAYLK 356
           +     G     C  C         L  HMN          +         S      L 
Sbjct: 10  YGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLL 69

Query: 357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLH-YKTHH 391
                   +    C  C   F      ++H  KT H
Sbjct: 70  EMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKH 105

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 42.1 bits (98), Expect = 3e-05
 Identities = 16/65 (24%), Positives = 22/65 (33%), Gaps = 1/65 (1%)

Query: 326 SLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTL 385
           S   + +  TG     C+ C  +Y T   L VHM+  TG      H       +R S   
Sbjct: 6   SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMN-ETGHYRDDNHETDNNNPKRWSKPR 64

Query: 386 HYKTH 390
                
Sbjct: 65  KRSLL 69

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 50.5 bits (121), Expect = 1e-08
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 4/71 (5%)

Query: 324 KRSLANHMNTHTGLKPHCCEI--CGRSYSTAAYLKVHMSCHTGETSHTCHL--CPQKFRQ 379
               +      + ++ H C    CG++Y  +++LK H   HTGE   +C    C ++F +
Sbjct: 2   SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61

Query: 380 RSSYTLHYKTH 390
               + H +TH
Sbjct: 62  SDELSRHRRTH 72

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 49.7 bits (118), Expect = 2e-08
 Identities = 16/53 (30%), Positives = 22/53 (41%)

Query: 313 VCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGE 365
           +C  CG        L  H+ THT ++P+ C  C  S+ T   L  HM      
Sbjct: 3   ICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS 55

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 42.0 bits (98), Expect = 1e-05
 Identities = 15/49 (30%), Positives = 22/49 (44%)

Query: 342 CEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
           CE CG      + LK H+  HT    + C  C   F+ + + T H K+ 
Sbjct: 4   CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 38.5 bits (89), Expect = 1e-04
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 284 FICDVCGKSYVRKGALTEHHQREHQGKKPV-CTICGKMLIDKRSLANHMNTHTGLK 338
           +IC+ CG    +   L + H R H   +P  CT C      K +L  HM +    K
Sbjct: 2   YICEECGIRXKKPSMLKK-HIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 48.3 bits (116), Expect = 3e-08
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGE 365
              +  G KP+ CE CG  +   A+L+ H+  HTG 
Sbjct: 2   SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGS 37

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 39.4 bits (93), Expect = 5e-05
 Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 1/39 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPH 340
                 G+KP  C  CG   +    L  H+  HTG  P 
Sbjct: 2   SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 49.0 bits (118), Expect = 3e-08
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 311 KP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMS-CHTGETS 367
           +  VC +C +    +  L  H  +HT  KP+ C +C R+++    L  H    H+G   
Sbjct: 1   RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNLG 59

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 48.6 bits (117), Expect = 4e-08
 Identities = 18/56 (32%), Positives = 28/56 (50%)

Query: 338 KPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPG 393
           +   CE+C R+++   +LK H   HT E  + C LC + F +R     H +  H G
Sbjct: 1   RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 44.4 bits (106), Expect = 1e-06
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 284 FICDVCGKSYVRKGALTEHHQREHQGKKP-VCTICGKMLIDKRSLANHMN-THTG 336
           F+C+VC +++ R+  L  H  R H  +KP  C +C +    +  L  H    H+G
Sbjct: 3   FVCEVCTRAFARQEHLKRH-YRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 38.2 bits (90), Expect = 2e-04
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 11/67 (16%)

Query: 243 KNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGALTEH 302
           +++ C  C + +  + +L  H    H     EK        + C +C +++ R+  L  H
Sbjct: 1   RSFVCEVCTRAFARQEHLKRH-YRSHTN---EK-------PYPCGLCNRAFTRRDLLIRH 49

Query: 303 HQREHQG 309
            Q+ H G
Sbjct: 50  AQKIHSG 56

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 50.0 bits (119), Expect = 4e-08
 Identities = 17/71 (23%), Positives = 22/71 (30%), Gaps = 9/71 (12%)

Query: 281 KREFICDVCGKSYVRKGALTEHHQREHQGKKP---------VCTICGKMLIDKRSLANHM 331
           +       C +++     L  H   EH G             C   GK    K  L NH+
Sbjct: 23  QLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI 82

Query: 332 NTHTGLKPHCC 342
             HTG K    
Sbjct: 83  RVHTGEKSGPS 93

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 40.0 bits (93), Expect = 1e-04
 Identities = 15/74 (20%), Positives = 21/74 (28%), Gaps = 9/74 (12%)

Query: 306 EHQGKKPVCTICGKMLIDKRSLANHMN-THTGLKPHC--------CEICGRSYSTAAYLK 356
           +          C +       L  H+   H G             C   G+S+     L 
Sbjct: 20  DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79

Query: 357 VHMSCHTGETSHTC 370
            H+  HTGE S   
Sbjct: 80  NHIRVHTGEKSGPS 93

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 39.6 bits (92), Expect = 2e-04
 Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 9/67 (13%)

Query: 333 THTGLKPHCCEICGRSYSTAAYLKVHMS-CHTGETSHTCHLCP--------QKFRQRSSY 383
                     + C R++ST   L  H++  H G      H+C         + F+ +   
Sbjct: 19  IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78

Query: 384 TLHYKTH 390
             H + H
Sbjct: 79  VNHIRVH 85

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 47.7 bits (114), Expect = 1e-07
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 4/66 (6%)

Query: 327 LANHMNTHTGLKPHCC--EICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYT 384
           L N++      +P+ C  E C R +S +  L  H+  HTG+    C +C + F +    T
Sbjct: 9   LLNYVVPKM--RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLT 66

Query: 385 LHYKTH 390
            H +TH
Sbjct: 67  THIRTH 72

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 303 HQREHQGKKP-VCTI--CGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHM 359
                   +P  C +  C +       L  H+  HTG KP  C IC R++S + +L  H+
Sbjct: 10  LNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 69

Query: 360 SCHT 363
             HT
Sbjct: 70  RTHT 73

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 46.0 bits (110), Expect = 2e-07
 Identities = 11/43 (25%), Positives = 22/43 (51%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
            +  ++ +G KP+ C  CG+++   + L VH   H G +  + 
Sbjct: 1   GSSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 45.2 bits (108), Expect = 4e-07
 Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 1/42 (2%)

Query: 302 HHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
                  G+KP  C  CGK  I K  L  H  TH G+     
Sbjct: 2   SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.0 bits (110), Expect = 2e-07
 Identities = 11/41 (26%), Positives = 18/41 (43%)

Query: 330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
             ++ TG KP  C+ CG ++S +  L  H+  H        
Sbjct: 3   SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.3 bits (95), Expect = 2e-05
 Identities = 11/41 (26%), Positives = 14/41 (34%), Gaps = 1/41 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
                 G+KP  C  CG       SL  H+ +H    P   
Sbjct: 3   SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.6 bits (109), Expect = 4e-07
 Identities = 14/43 (32%), Positives = 25/43 (58%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
            +  ++ TG KP+ C +CG+++  +A+L  H+  HT ET    
Sbjct: 1   GSSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.0 bits (97), Expect = 1e-05
 Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 1/42 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
                 G+KP  C +CGK  +    L  H+  HT        
Sbjct: 3   SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 45.2 bits (108), Expect = 4e-07
 Identities = 14/43 (32%), Positives = 27/43 (62%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
            +  ++ TG+KP+ C  CG+++ + +YL +H   HTGE+  + 
Sbjct: 1   GSSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 43.2 bits (103), Expect = 2e-06
 Identities = 15/41 (36%), Positives = 15/41 (36%), Gaps = 1/41 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
                 G KP VC  CGK    K  L  H  THTG      
Sbjct: 3   SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.2 bits (108), Expect = 5e-07
 Identities = 15/43 (34%), Positives = 25/43 (58%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
            +  ++ TG KP+ C  CG+S++  + L++H  CHTGE     
Sbjct: 1   GSSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.1 bits (100), Expect = 6e-06
 Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 1/41 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
                 G+KP  C+ CGK    K  L  H   HTG +    
Sbjct: 3   SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 45.2 bits (108), Expect = 5e-07
 Identities = 12/43 (27%), Positives = 20/43 (46%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
            +  ++ +  K H C  CGR ++  ++L  H   HTGE     
Sbjct: 1   GSSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 38.7 bits (91), Expect = 8e-05
 Identities = 12/41 (29%), Positives = 13/41 (31%), Gaps = 1/41 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
                   K   C  CG+    K  L  H   HTG KP   
Sbjct: 3   SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 44.9 bits (107), Expect = 6e-07
 Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 2/45 (4%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCEICG 346
                 G+KP  C  CGK         +H  +H+G KP      G
Sbjct: 3   SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS-SG 46

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 43.3 bits (103), Expect = 2e-06
 Identities = 12/43 (27%), Positives = 20/43 (46%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
            +  ++ +G KP  CE CG+ + T +    H   H+GE     
Sbjct: 1   GSSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.8 bits (107), Expect = 6e-07
 Identities = 10/43 (23%), Positives = 22/43 (51%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
            +  ++ +G +P+ C  CG+++   ++L  H+  H  E S   
Sbjct: 1   GSSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.3 bits (90), Expect = 1e-04
 Identities = 10/41 (24%), Positives = 13/41 (31%), Gaps = 1/41 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
                 G++P  C  CGK       L  H+  H   K    
Sbjct: 3   SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.9 bits (107), Expect = 7e-07
 Identities = 10/41 (24%), Positives = 18/41 (43%)

Query: 330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
             ++ TG KP  C  CG+++   + L +H   H  +     
Sbjct: 3   SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.8 bits (99), Expect = 8e-06
 Identities = 14/41 (34%), Positives = 15/41 (36%), Gaps = 1/41 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
                 G+KP  CT CGK    K  L  H  TH   K    
Sbjct: 3   SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.4 bits (106), Expect = 8e-07
 Identities = 14/43 (32%), Positives = 22/43 (51%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
            +  ++ TG K + C+ CG+S+S A  L  H   H+GE     
Sbjct: 1   GSSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.7 bits (91), Expect = 8e-05
 Identities = 12/41 (29%), Positives = 14/41 (34%), Gaps = 1/41 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
                 G+K   C  CGK       L  H   H+G KP   
Sbjct: 3   SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.0 bits (105), Expect = 1e-06
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
                 G++P +CT+CGK   D+ +L  H   HTG KP   
Sbjct: 3   SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.2 bits (95), Expect = 3e-05
 Identities = 12/41 (29%), Positives = 22/41 (53%)

Query: 330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
             ++ TG +P+ C +CG++++  + L  H   HTGE     
Sbjct: 3   SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.1 bits (105), Expect = 1e-06
 Identities = 14/43 (32%), Positives = 25/43 (58%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
            +  ++  G KP+ C  CG+++S+ +YL +HM  H+GE     
Sbjct: 1   GSSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.8 bits (99), Expect = 7e-06
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
                 G+KP  C+ CGK    K  L  HM TH+G KP    
Sbjct: 3   SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.0 bits (105), Expect = 1e-06
 Identities = 14/43 (32%), Positives = 21/43 (48%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
            +  ++ TG KP  C+ICG+S+   + L  H   HT E     
Sbjct: 1   GSSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 43.6 bits (104), Expect = 2e-06
 Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 1/42 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
                 G+KP  C ICGK    +  L  H   HT  KP    
Sbjct: 3   SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A Length = 46

 Score = 43.7 bits (104), Expect = 2e-06
 Identities = 13/43 (30%), Positives = 22/43 (51%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
            +  ++ TG+KP+ C  C +++S  + L VH   HTG      
Sbjct: 1   GSSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A Length = 46

 Score = 43.3 bits (103), Expect = 2e-06
 Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
                 G KP  C+ C K    K  L  H  +HTG+KP   
Sbjct: 3   SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A Length = 46

 Score = 43.7 bits (104), Expect = 2e-06
 Identities = 15/43 (34%), Positives = 21/43 (48%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
            +  ++ TG KP  C  CG+ +S  + L VH   HTGE     
Sbjct: 1   GSSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A Length = 46

 Score = 41.4 bits (98), Expect = 1e-05
 Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
                 G+KP  C  CGK    + +L  H   HTG KP   
Sbjct: 3   SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 43.6 bits (104), Expect = 2e-06
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
            +  ++ +  KP+ CE CG+ Y+    L +H   H GE +   
Sbjct: 1   GSSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.6 bits (96), Expect = 2e-05
 Identities = 11/41 (26%), Positives = 14/41 (34%), Gaps = 1/41 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
                  +KP  C  CGK    + +L  H   H G K    
Sbjct: 3   SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 43.3 bits (103), Expect = 2e-06
 Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
                 G+KP +C  CGK    + +L  H   HT  KP    
Sbjct: 3   SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.9 bits (102), Expect = 3e-06
 Identities = 11/43 (25%), Positives = 21/43 (48%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
            +  ++ TG KP+ C  CG++++  + L  H   HT +     
Sbjct: 1   GSSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 43.3 bits (103), Expect = 2e-06
 Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHM-SCHTGETSHTCHLCPQKFRQ 379
           +  ++ +  KP+ C+ CG+ +S   +L  H+   HT E  H C +       
Sbjct: 2   SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 43.3 bits (103), Expect = 2e-06
 Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHM-NTHTGLKPHCCEICGRSYSTA 352
                   KP +C  CGK       L  H+   HT  +PH C++     S+ 
Sbjct: 3   SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSSG 54

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 42.2 bits (100), Expect = 6e-06
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 284 FICDVCGKSYVRKGALTEHHQREHQGKKP-VCTICGK 319
           +IC  CGK + R   L  H ++ H  ++P  C +   
Sbjct: 13  YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVS 49

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 43.3 bits (103), Expect = 2e-06
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
                 G+ P +C+ CGK+   K +L  H   HTG +P   
Sbjct: 3   SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.3 bits (98), Expect = 1e-05
 Identities = 12/42 (28%), Positives = 19/42 (45%)

Query: 329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
           +  ++ TG  P  C  CG+ ++    L +H   HTGE     
Sbjct: 2   SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 43.3 bits (103), Expect = 2e-06
 Identities = 11/38 (28%), Positives = 18/38 (47%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGE 365
            +  ++  G + H C  CG+ +  A+    H   HTGE
Sbjct: 1   GSSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGE 38

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 39.8 bits (94), Expect = 4e-05
 Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 1/41 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
                 G++   C+ CGK  +   +   H   HTG KP   
Sbjct: 3   SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.9 bits (102), Expect = 3e-06
 Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 302 HHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
                  G+KP  C  CGK    K  L+ H  THTG KP    
Sbjct: 2   SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.1 bits (100), Expect = 5e-06
 Identities = 13/41 (31%), Positives = 21/41 (51%)

Query: 330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
             ++ +G KP+ C  CG+++S  + L  H   HTGE     
Sbjct: 3   SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 43.0 bits (102), Expect = 3e-06
 Identities = 11/38 (28%), Positives = 22/38 (57%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGE 365
            +  ++ +G K H C+ CG+++   + L++H   H GE
Sbjct: 1   GSSGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGE 38

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 36.0 bits (84), Expect = 7e-04
 Identities = 11/42 (26%), Positives = 13/42 (30%), Gaps = 1/42 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
                 G+K   C  CGK      +L  H   H G K     
Sbjct: 3   SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 36.0 bits (84), Expect = 8e-04
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
             S  +GE SHTC  C + F   S+  +H + H
Sbjct: 3   SGSSGSGEKSHTCDECGKNFCYISALRIHQRVH 35

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.9 bits (102), Expect = 3e-06
 Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
                 G+KP  C  CGK   D+ +L  H   HTG KP    
Sbjct: 3   SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS 44

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.3 bits (98), Expect = 1e-05
 Identities = 13/43 (30%), Positives = 22/43 (51%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
            +  ++ TG KP+ C  CG++++  + L  H   HTGE     
Sbjct: 1   GSSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1} Length = 129

 Score = 45.3 bits (106), Expect = 3e-06
 Identities = 22/110 (20%), Positives = 37/110 (33%), Gaps = 3/110 (2%)

Query: 284 FICDVCGKSYVRKGALTEHHQREHQGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
               V  +   R   LT   Q+          I    L+D+ S    +     +    C 
Sbjct: 20  IFIHVTLEELKRYHQLT-PEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCP 78

Query: 344 ICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPG 393
           +C   +S++  LK H+     E +  C +C ++F    S   H    H  
Sbjct: 79  LCLMPFSSSVSLKQHI--RYTEHTKVCPVCKKEFTSTDSALDHVCKKHNI 126

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 45

 Score = 42.9 bits (102), Expect = 3e-06
 Identities = 15/43 (34%), Positives = 20/43 (46%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
            +  ++ TG KP  C  CG+S+     L  H   HTGE S   
Sbjct: 1   GSSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 45

 Score = 42.5 bits (101), Expect = 4e-06
 Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
                 G+KP  CT CGK    K +L  H   HTG K    
Sbjct: 3   SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 42.9 bits (102), Expect = 3e-06
 Identities = 13/43 (30%), Positives = 22/43 (51%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
            +  ++ TG +P+ C  CG+++ T + L  H   HTGE     
Sbjct: 1   GSSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 41.4 bits (98), Expect = 1e-05
 Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
                 G++P  C  CGK    K SL  H  +HTG KP   
Sbjct: 3   SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.9 bits (102), Expect = 3e-06
 Identities = 10/43 (23%), Positives = 21/43 (48%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
            +  ++ +G +P  C  CG+ +   ++L  H+  H+ E S   
Sbjct: 1   GSSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.5 bits (88), Expect = 2e-04
 Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 1/41 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
                 G++P  C  CGK    +  LA H+  H+  K    
Sbjct: 3   SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.9 bits (102), Expect = 3e-06
 Identities = 13/43 (30%), Positives = 23/43 (53%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
            +  ++ TG KP+ C  CG++++  + L +H   HTGE     
Sbjct: 1   GSSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.9 bits (102), Expect = 3e-06
 Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
                 G+KP  C+ CGK    K  L  H  +HTG +    
Sbjct: 3   SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.9 bits (102), Expect = 3e-06
 Identities = 13/43 (30%), Positives = 21/43 (48%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
            +  ++ +G KP  CE CG+ ++  + L  H   HTGE     
Sbjct: 1   GSSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.2 bits (95), Expect = 3e-05
 Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 1/41 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
                 G+KP  C  CGK       L +H   HTG KP   
Sbjct: 3   SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.5 bits (101), Expect = 4e-06
 Identities = 13/41 (31%), Positives = 15/41 (36%), Gaps = 1/41 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
                 G+KP  C  CGK    +  L  H   HTG K    
Sbjct: 3   SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.1 bits (100), Expect = 6e-06
 Identities = 13/42 (30%), Positives = 19/42 (45%)

Query: 329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
           +  ++ +G KP+ C  CG+ Y     L  H   HTGE     
Sbjct: 2   SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.5 bits (101), Expect = 4e-06
 Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
                 G+KP  C+ C K    K +L  H  THTG KP    
Sbjct: 3   SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.1 bits (100), Expect = 5e-06
 Identities = 14/43 (32%), Positives = 22/43 (51%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
            +  ++ TG KP  C  C ++++T + L VH   HTGE     
Sbjct: 1   GSSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} Length = 46

 Score = 42.5 bits (101), Expect = 4e-06
 Identities = 12/41 (29%), Positives = 18/41 (43%)

Query: 330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
             ++  G+ P+ C  C +S+S    L VH   HT E     
Sbjct: 3   SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} Length = 46

 Score = 38.7 bits (91), Expect = 9e-05
 Identities = 12/41 (29%), Positives = 13/41 (31%), Gaps = 1/41 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
                 G  P  C+ C K    K  L  H   HT  KP   
Sbjct: 3   SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.5 bits (101), Expect = 5e-06
 Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
                 G+KP  C+ CGK  I K  L  H   HTG  P   
Sbjct: 3   SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.1 bits (100), Expect = 5e-06
 Identities = 15/43 (34%), Positives = 22/43 (51%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
            +  ++ TG KP+ C  CG+S+   + L VH   HTGE     
Sbjct: 1   GSSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.5 bits (101), Expect = 5e-06
 Identities = 12/43 (27%), Positives = 22/43 (51%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
            +  ++ +G KP+ C+ C +++    +L  H   HTGE S   
Sbjct: 1   GSSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.3 bits (90), Expect = 1e-04
 Identities = 13/42 (30%), Positives = 14/42 (33%), Gaps = 1/42 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
                 GKKP  C  C K  I    L  H   HTG +     
Sbjct: 3   SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.1 bits (100), Expect = 5e-06
 Identities = 15/43 (34%), Positives = 23/43 (53%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
            +  ++ TG +PH C  CG+S+  +A+L  H   HTGE     
Sbjct: 1   GSSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.8 bits (94), Expect = 4e-05
 Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 1/42 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
                 G++P  C  CGK  I    L  H   HTG KP    
Sbjct: 3   SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.1 bits (100), Expect = 5e-06
 Identities = 14/43 (32%), Positives = 23/43 (53%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
            +  ++ TG KP+ C++C +S+   + L VH   HTGE     
Sbjct: 1   GSSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.7 bits (99), Expect = 8e-06
 Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 1/41 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
                 G+KP  C +C K      SL  H   HTG KP   
Sbjct: 3   SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 42.1 bits (100), Expect = 5e-06
 Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
                 G+KP  C  CGK  I +R L  H   HTG KP    
Sbjct: 3   SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 42.1 bits (100), Expect = 6e-06
 Identities = 14/43 (32%), Positives = 20/43 (46%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
            +  ++ TG KP+ CE CG+ +     L  H   HTGE     
Sbjct: 1   GSSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.1 bits (100), Expect = 5e-06
 Identities = 11/43 (25%), Positives = 22/43 (51%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
            +  ++ TG + + C  CG++++  + L +H   HTGE     
Sbjct: 1   GSSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.1 bits (100), Expect = 6e-06
 Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
                 G++   C+ CGK    K +L  H   HTG KP   
Sbjct: 3   SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} Length = 46

 Score = 42.1 bits (100), Expect = 5e-06
 Identities = 11/41 (26%), Positives = 18/41 (43%)

Query: 330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
             ++  G K   C  C   +S A+ L++H + H GE     
Sbjct: 3   SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} Length = 46

 Score = 40.2 bits (95), Expect = 3e-05
 Identities = 12/41 (29%), Positives = 13/41 (31%), Gaps = 1/41 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
                 G+K   C  C        SL  H N H G KP   
Sbjct: 3   SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.1 bits (100), Expect = 5e-06
 Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
                 G+KP +C  CGK  I K  L  H   HTG KP    
Sbjct: 3   SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.7 bits (99), Expect = 8e-06
 Identities = 14/43 (32%), Positives = 22/43 (51%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
            +  ++ TG KP+ C  CG+S+   ++L  H   HTGE     
Sbjct: 1   GSSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 42.2 bits (100), Expect = 5e-06
 Identities = 9/43 (20%), Positives = 21/43 (48%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
            +  ++ T  K + C  CG++++   +L  H   HT ++  + 
Sbjct: 1   GSSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 42.1 bits (100), Expect = 5e-06
 Identities = 13/41 (31%), Positives = 15/41 (36%), Gaps = 1/41 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
                 G+KP  C  C K    K +L  H  THTG      
Sbjct: 3   SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 42.1 bits (100), Expect = 6e-06
 Identities = 14/43 (32%), Positives = 25/43 (58%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
            +  ++ TG KP+ C  C ++++T + L VH   HTGE+  + 
Sbjct: 1   GSSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.1 bits (100), Expect = 5e-06
 Identities = 13/43 (30%), Positives = 24/43 (55%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
            +  ++ TG KP+ C++C ++++  A+L  H   HTGE     
Sbjct: 1   GSSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
                 G+KP  C +C K    K  LA H  THTG KP    
Sbjct: 3   SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.1 bits (100), Expect = 6e-06
 Identities = 16/43 (37%), Positives = 24/43 (55%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
            +  ++ TG KP+ C ICG+S++  + L VH   HTGE     
Sbjct: 1   GSSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.8 bits (99), Expect = 7e-06
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
                 G+KP  C+ICGK    K  L  H   HTG KP   
Sbjct: 3   SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.1 bits (100), Expect = 6e-06
 Identities = 15/43 (34%), Positives = 16/43 (37%), Gaps = 1/43 (2%)

Query: 302 HHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
                  G+KP  C  CGK   D   L  H   HTG KP    
Sbjct: 2   SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.6 bits (96), Expect = 2e-05
 Identities = 14/43 (32%), Positives = 20/43 (46%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
            +  ++ TG KP  C  CG+++S    L  H   HTGE     
Sbjct: 1   GSSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 42.1 bits (100), Expect = 6e-06
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 333 THTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
             +G KP  C  C +++S+ +YL VH   H  E     
Sbjct: 4   GSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.1 bits (100), Expect = 6e-06
 Identities = 13/44 (29%), Positives = 22/44 (50%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCH 371
            +  ++ +G KP  CE CG+ ++  ++L  H   HTGE      
Sbjct: 1   GSSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.1 bits (92), Expect = 6e-05
 Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 1/41 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
                 G+KP  C  CGK       L +H   HTG KP   
Sbjct: 3   SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.7 bits (99), Expect = 7e-06
 Identities = 15/41 (36%), Positives = 16/41 (39%), Gaps = 1/41 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
                 G+KP VC  CGK       L  H   HTG KP   
Sbjct: 3   SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.8 bits (94), Expect = 4e-05
 Identities = 13/41 (31%), Positives = 22/41 (53%)

Query: 330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
             ++ +G KP+ C+ CG+++  +A L  H   HTGE     
Sbjct: 3   SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.7 bits (99), Expect = 7e-06
 Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
                 G K   CT CGK    K +L+ H   HTG KP    
Sbjct: 3   SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.7 bits (99), Expect = 9e-06
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
            +  ++ TG K   C  CG++++  + L +H   HTGE     
Sbjct: 1   GSSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 41.8 bits (99), Expect = 7e-06
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGE 365
              +  G KP+ C+ CG+++S    L VH+  HTG 
Sbjct: 2   SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGS 37

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 41.4 bits (98), Expect = 9e-06
 Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPH 340
                 G+KP  C  CGK    K SL  H+  HTG  P 
Sbjct: 2   SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.7 bits (99), Expect = 7e-06
 Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 302 HHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
                  G+KP  C  CGK    + SL  H   HTG KP    
Sbjct: 2   SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.8 bits (94), Expect = 3e-05
 Identities = 13/43 (30%), Positives = 23/43 (53%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
            +  ++ TG KP+ C  CG+++S  + L  H + HTG+     
Sbjct: 1   GSSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.7 bits (99), Expect = 7e-06
 Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 1/43 (2%)

Query: 302 HHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
                  G+KP  C +C K      SL  H   H+G KP    
Sbjct: 2   SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.6 bits (96), Expect = 2e-05
 Identities = 13/43 (30%), Positives = 23/43 (53%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
            +  ++ TG KP+ C++C +++S  A L  H   H+GE     
Sbjct: 1   GSSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.8 bits (99), Expect = 7e-06
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 302 HHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
                  G+KP  C  CGK    + SLA H  TH+G KP   
Sbjct: 2   SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.2 bits (95), Expect = 3e-05
 Identities = 12/43 (27%), Positives = 23/43 (53%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
            +  ++ TG KP+ C  CG+++   + L +H + H+GE     
Sbjct: 1   GSSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.8 bits (99), Expect = 8e-06
 Identities = 13/43 (30%), Positives = 20/43 (46%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
            +  ++  G KP+ C  CG+S+S +  L  H   HT E     
Sbjct: 1   GSSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.1 bits (92), Expect = 8e-05
 Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
                +G+KP  C+ CGK       L  H  THT  KP   
Sbjct: 3   SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.7 bits (99), Expect = 8e-06
 Identities = 11/43 (25%), Positives = 20/43 (46%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
            +  ++  G K   C  C ++++ ++ L VH   HTGE     
Sbjct: 1   GSSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.0 bits (97), Expect = 1e-05
 Identities = 14/41 (34%), Positives = 14/41 (34%), Gaps = 1/41 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
                 GKK   C  C K      SL  H   HTG KP   
Sbjct: 3   SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.7 bits (99), Expect = 8e-06
 Identities = 15/44 (34%), Positives = 23/44 (52%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCH 371
            +  ++ TG KP+ CE CG+ Y++   L +H   HTGE      
Sbjct: 1   GSSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.2 bits (95), Expect = 3e-05
 Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
                 G+KP  C  CGK    K +L  H   HTG +P   
Sbjct: 3   SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 48

 Score = 41.9 bits (99), Expect = 8e-06
 Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 2/45 (4%)

Query: 328 ANHMNTHTGLKPHCC--EICGRSYSTAAYLKVHMSCHTGETSHTC 370
            +  ++ TG KP  C    CG  +S +  L  H   H+G      
Sbjct: 1   GSSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 48

 Score = 38.4 bits (90), Expect = 1e-04
 Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 303 HQREHQGKKP-VCT--ICGKMLIDKRSLANHMNTHTGLKPHCCE 343
                 G+KP  CT   CG        L+ H  +H+G+KP    
Sbjct: 3   SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.7 bits (99), Expect = 8e-06
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
                 G+KP  C++CGK    ++SL+ H   H+G KP    
Sbjct: 3   SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.0 bits (97), Expect = 1e-05
 Identities = 13/43 (30%), Positives = 23/43 (53%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
            +  ++ TG KP+ C +CG+++S    L VH   H+G+     
Sbjct: 1   GSSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.4 bits (98), Expect = 9e-06
 Identities = 11/43 (25%), Positives = 20/43 (46%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
            +  ++ TG KP+ C  CG+++   +    H   HTG+     
Sbjct: 1   GSSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.4 bits (98), Expect = 1e-05
 Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 1/42 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
                 G+KP  C  CGK   D  S   H   HTG +P    
Sbjct: 3   SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A Length = 46

 Score = 41.7 bits (99), Expect = 9e-06
 Identities = 15/42 (35%), Positives = 16/42 (38%), Gaps = 1/42 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
                 G+KP  C  CGK       LA H   HTG KP    
Sbjct: 3   SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A Length = 46

 Score = 40.9 bits (97), Expect = 1e-05
 Identities = 15/41 (36%), Positives = 21/41 (51%)

Query: 330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
             ++ TG KP  C  CG+S+S ++ L  H   HTGE     
Sbjct: 3   SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.4 bits (98), Expect = 1e-05
 Identities = 12/43 (27%), Positives = 24/43 (55%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
            +  ++  G K + C++CG+ +S +++L+ H   HTGE     
Sbjct: 1   GSSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.2 bits (95), Expect = 2e-05
 Identities = 13/41 (31%), Positives = 15/41 (36%), Gaps = 1/41 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
                 G+K   C +CGK       L  H   HTG KP   
Sbjct: 3   SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A Length = 46

 Score = 41.4 bits (98), Expect = 1e-05
 Identities = 14/43 (32%), Positives = 23/43 (53%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
            +  ++ TG KP+ C+ CG+S+  A+ L  H   H+GE     
Sbjct: 1   GSSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A Length = 46

 Score = 39.9 bits (94), Expect = 3e-05
 Identities = 13/42 (30%), Positives = 15/42 (35%), Gaps = 1/42 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
                 G+KP  C  CGK       L  H   H+G KP    
Sbjct: 3   SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 41.2 bits (97), Expect = 1e-05
 Identities = 10/38 (26%), Positives = 17/38 (44%)

Query: 333 THTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
             +G KP+ C  C  ++S    L  H   HT ++  + 
Sbjct: 4   GSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.4 bits (98), Expect = 1e-05
 Identities = 14/43 (32%), Positives = 23/43 (53%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
            +  ++ TG+KP+ C  CG+++S  + L  H   HTGE     
Sbjct: 1   GSSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.2 bits (95), Expect = 2e-05
 Identities = 15/42 (35%), Positives = 16/42 (38%), Gaps = 1/42 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
                 G KP +C  CGK      SL  H   HTG KP    
Sbjct: 3   SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.4 bits (98), Expect = 1e-05
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 302 HHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
                  G++   C+ CGK  I K +L+ H   H G KP   
Sbjct: 2   SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.8 bits (94), Expect = 4e-05
 Identities = 10/41 (24%), Positives = 19/41 (46%)

Query: 330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
             ++ TG + + C  CG+++   + L +H   H GE     
Sbjct: 3   SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.3 bits (98), Expect = 1e-05
 Identities = 12/44 (27%), Positives = 22/44 (50%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCH 371
            +  ++ +G KP  C+ CG+++    +L  H+  HTGE      
Sbjct: 1   GSSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.4 bits (93), Expect = 5e-05
 Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
                 G+KP  C  CGK       LA+H+  HTG KP    
Sbjct: 3   SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.0 bits (97), Expect = 1e-05
 Identities = 17/41 (41%), Positives = 22/41 (53%)

Query: 330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
             ++ TG KPH C  CG+S+S  + L VH   HTGE     
Sbjct: 3   SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.8 bits (94), Expect = 3e-05
 Identities = 13/41 (31%), Positives = 14/41 (34%), Gaps = 1/41 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
                 G+KP  C  CGK       L  H   HTG  P   
Sbjct: 3   SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.0 bits (97), Expect = 1e-05
 Identities = 14/43 (32%), Positives = 22/43 (51%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
            +  ++ TG KP+ C  CG++++  A L  H   HTGE     
Sbjct: 1   GSSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.6 bits (96), Expect = 2e-05
 Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
                 G+KP  C  CGK    K +L  H   HTG KP   
Sbjct: 3   SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 40.9 bits (97), Expect = 1e-05
 Identities = 11/41 (26%), Positives = 20/41 (48%)

Query: 330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
             ++ TG  P+ C  CG+ +S    L  H   H+G++  + 
Sbjct: 3   SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 40.9 bits (97), Expect = 1e-05
 Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 1/41 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
                 G+ P  C  CGK+   K  L +H  TH+G      
Sbjct: 3   SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.0 bits (97), Expect = 1e-05
 Identities = 12/43 (27%), Positives = 19/43 (44%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
            +  ++ TG  P+ C  CG+++S    L  H   H GE     
Sbjct: 1   GSSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.6 bits (96), Expect = 2e-05
 Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 1/42 (2%)

Query: 302 HHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
                  G+ P  C  CGK    K  L +H  TH G KP   
Sbjct: 2   SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.0 bits (97), Expect = 1e-05
 Identities = 13/43 (30%), Positives = 26/43 (60%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
            +  ++ TG KP+ C++CG+++  +++L  H S H+GE     
Sbjct: 1   GSSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.4 bits (93), Expect = 5e-05
 Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
                 G+KP  C +CGK       L  H + H+G +P   
Sbjct: 3   SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A Length = 46

 Score = 41.0 bits (97), Expect = 1e-05
 Identities = 13/44 (29%), Positives = 20/44 (45%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCH 371
            +  ++ TG K + C  CG+ +S  + L  H   HTGE      
Sbjct: 1   GSSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A Length = 46

 Score = 39.0 bits (92), Expect = 6e-05
 Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 1/42 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
                 G+K   C  CGK+      L+ H   HTG KP    
Sbjct: 3   SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A Length = 46

 Score = 41.0 bits (97), Expect = 1e-05
 Identities = 14/43 (32%), Positives = 23/43 (53%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
            +  ++ TG KP+ C+ CG+++S   +L  H   HTGE     
Sbjct: 1   GSSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A Length = 46

 Score = 39.4 bits (93), Expect = 6e-05
 Identities = 14/41 (34%), Positives = 15/41 (36%), Gaps = 1/41 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
                 G+KP  C  CGK       L  H   HTG KP   
Sbjct: 3   SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.9 bits (97), Expect = 1e-05
 Identities = 11/43 (25%), Positives = 20/43 (46%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
            +  ++ +G KP+ C  CG+++    +L  H   HTG      
Sbjct: 1   GSSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.2 bits (90), Expect = 1e-04
 Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 1/42 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
                 G+KP  C+ CGK       L  H   HTG +P    
Sbjct: 3   SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.6 bits (96), Expect = 2e-05
 Identities = 15/43 (34%), Positives = 15/43 (34%), Gaps = 1/43 (2%)

Query: 302 HHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
                  G KP  C  CGK       LA H   HTG KP    
Sbjct: 2   SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 14/41 (34%), Positives = 21/41 (51%)

Query: 330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
             ++ TG KP+ C  CG+++S  + L  H   HTGE     
Sbjct: 3   SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.5 bits (96), Expect = 2e-05
 Identities = 13/44 (29%), Positives = 21/44 (47%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCH 371
            +  ++ TG KP+ C  CG+ +   ++L  H   HTGE      
Sbjct: 1   GSSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.0 bits (92), Expect = 7e-05
 Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
                 G+KP  C  CGK+      LA H   HTG KP    
Sbjct: 3   SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.6 bits (96), Expect = 2e-05
 Identities = 13/43 (30%), Positives = 21/43 (48%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
            +  ++ TG KP+ C  CG+++   + L  H   HTGE     
Sbjct: 1   GSSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.8 bits (94), Expect = 4e-05
 Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 1/42 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
                 G+KP  C  CGK      +L  H   HTG KP    
Sbjct: 3   SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A Length = 42

 Score = 40.3 bits (95), Expect = 2e-05
 Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 1/39 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPH 340
                 G+ P +C  CGK    + SLA H  + +   P 
Sbjct: 2   SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A Length = 42

 Score = 40.3 bits (95), Expect = 2e-05
 Identities = 9/36 (25%), Positives = 15/36 (41%)

Query: 330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGE 365
              +  G  P+ C  CG+S++    L VH    +  
Sbjct: 2   SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQS 37

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.6 bits (96), Expect = 2e-05
 Identities = 12/43 (27%), Positives = 22/43 (51%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
            +  ++ +G KP+ C  CG+ ++  ++L  H   HTGE     
Sbjct: 1   GSSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.6 bits (91), Expect = 1e-04
 Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
                 G+KP  C  CGK+      L NH   HTG KP   
Sbjct: 3   SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.6 bits (96), Expect = 2e-05
 Identities = 15/42 (35%), Positives = 16/42 (38%), Gaps = 1/42 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
                 G+KP  C  CGK  I    L  H   HTG KP    
Sbjct: 3   SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.8 bits (94), Expect = 4e-05
 Identities = 14/41 (34%), Positives = 22/41 (53%)

Query: 330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
             ++ TG KP+ CE CG+++   + L+ H   HTGE     
Sbjct: 3   SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A Length = 42

 Score = 40.2 bits (95), Expect = 2e-05
 Identities = 10/39 (25%), Positives = 19/39 (48%)

Query: 332 NTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
           +  +G  P+ C  CG++++    L  H   H GE+  + 
Sbjct: 3   SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A Length = 42

 Score = 37.5 bits (88), Expect = 3e-04
 Identities = 12/40 (30%), Positives = 15/40 (37%), Gaps = 1/40 (2%)

Query: 304 QREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
                G+ P  C+ CGK    K  L +H  TH G      
Sbjct: 2   SSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.6 bits (96), Expect = 2e-05
 Identities = 15/43 (34%), Positives = 16/43 (37%), Gaps = 1/43 (2%)

Query: 302 HHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
                  G+KP  C  CGK       LA H   HTG KP    
Sbjct: 2   SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.4 bits (93), Expect = 5e-05
 Identities = 14/42 (33%), Positives = 22/42 (52%)

Query: 329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
           +  ++ TG KP+ C  CG+++S  + L  H   HTGE     
Sbjct: 2   SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 41.2 bits (96), Expect = 2e-05
 Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 8/67 (11%)

Query: 303 HQREHQGKKPV-CTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSC 361
            Q+ H G +   C+ CG +           +T +  K   CE C +     A L      
Sbjct: 9   RQKIHLGDRSQKCSKCGIIF-------IRRSTLSRRKTPMCEKCRKDSCQEAALNKDEGN 61

Query: 362 HTGETSH 368
            +G+ + 
Sbjct: 62  ESGKKTS 68

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 40.8 bits (95), Expect = 3e-05
 Identities = 10/65 (15%), Positives = 17/65 (26%), Gaps = 7/65 (10%)

Query: 326 SLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTL 385
           S       H G +   C  CG  +          S  +   +  C  C +   Q ++   
Sbjct: 5   SSGKRQKIHLGDRSQKCSKCGIIFI-------RRSTLSRRKTPMCEKCRKDSCQEAALNK 57

Query: 386 HYKTH 390
                
Sbjct: 58  DEGNE 62

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.2 bits (95), Expect = 3e-05
 Identities = 15/43 (34%), Positives = 21/43 (48%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
            +  ++ TG KP  C  CG+SY+   +L  H   HTGE     
Sbjct: 1   GSSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.4 bits (93), Expect = 5e-05
 Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 1/41 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCC 342
                 G+KP  C  CGK    +  L  H   HTG KP   
Sbjct: 3   SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.8 bits (94), Expect = 3e-05
 Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 302 HHQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
                  G+KP  C  CGK+      LA H   HTG KP    
Sbjct: 2   SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.4 bits (93), Expect = 5e-05
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
            +  ++ TG KP+ C  CG+ ++  ++L  H   HTG      
Sbjct: 1   GSSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.8 bits (94), Expect = 4e-05
 Identities = 14/43 (32%), Positives = 21/43 (48%)

Query: 329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCH 371
           +  ++ TG KP+ C  CG+ +   +YL  H   HTGE      
Sbjct: 2   SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.4 bits (93), Expect = 4e-05
 Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
                 G+KP  C  CGK+      L+ H   HTG KP    
Sbjct: 3   SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 47

 Score = 39.9 bits (94), Expect = 4e-05
 Identities = 17/42 (40%), Positives = 17/42 (40%), Gaps = 2/42 (4%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHM-NTHTGLKPHCC 342
                 GKKP  C  CGK  I   SL  H    HTG KP   
Sbjct: 3   SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 47

 Score = 39.5 bits (93), Expect = 6e-05
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHM-SCHTGETSHTC 370
            +  ++ TG KP+ C  CG+++     L  H    HTGE     
Sbjct: 1   GSSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 48

 Score = 39.5 bits (92), Expect = 4e-05
 Identities = 11/41 (26%), Positives = 18/41 (43%)

Query: 333 THTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC 373
           +    K   CEICG+ +    +L  H   H+GE  ++    
Sbjct: 6   SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 41.4 bits (96), Expect = 5e-05
 Identities = 22/91 (24%), Positives = 32/91 (35%), Gaps = 12/91 (13%)

Query: 120 KLYECSLCNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTFDSKAKIQEHIIS 179
           ++Y+C LCN    +      H R            +   VC YC+  F S    QEH   
Sbjct: 15  EVYQCRLCNAKLSSLLEQGSHERL----------CRNAAVCPYCSLRFFSPELKQEH--E 62

Query: 180 SHMHEKLYQCDFCGSQQRTKCRFYYHLRDKH 210
           S    K   C  C    ++    + H  + H
Sbjct: 63  SKCEYKKLTCLECMRTFKSSFSIWRHQVEVH 93

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 41.0 bits (95), Expect = 6e-05
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 5/85 (5%)

Query: 184 EKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHLAVHKIGK 243
           +++YQC  C ++  +      H R           C +CS  F   EL + H +     K
Sbjct: 14  KEVYQCRLCNAKLSSLLEQGSHERLCR----NAAVCPYCSLRFFSPELKQEHES-KCEYK 68

Query: 244 NYQCYYCRKTYCHKPNLTNHIQNVH 268
              C  C +T+    ++  H   VH
Sbjct: 69  KLTCLECMRTFKSSFSIWRHQVEVH 93

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.4 bits (93), Expect = 6e-05
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
                 G+KP  C  CGK+      LANH   HTG+KP    
Sbjct: 3   SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.3 bits (90), Expect = 1e-04
 Identities = 12/42 (28%), Positives = 20/42 (47%)

Query: 330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCH 371
             ++ TG KP+ C  CG+ ++  ++L  H   HTG       
Sbjct: 3   SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 102

 Score = 40.9 bits (95), Expect = 7e-05
 Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 7/78 (8%)

Query: 232 LRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGK 291
              +    K+   Y+C YC          T H+ + H    L          ++C  C  
Sbjct: 6   HHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNS-------SYVCVECNF 58

Query: 292 SYVRKGALTEHHQREHQG 309
              R  AL+EH+ + H G
Sbjct: 59  LTKRYDALSEHNLKYHPG 76

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.0 bits (92), Expect = 7e-05
 Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 1/42 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
                 G+KP  C  CGK+      L  H   HTG KP    
Sbjct: 3   SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.6 bits (91), Expect = 9e-05
 Identities = 13/42 (30%), Positives = 22/42 (52%)

Query: 329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
           +  ++ TG KP+ C  CG+ ++  ++L  H   HTGE     
Sbjct: 2   SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.0 bits (92), Expect = 7e-05
 Identities = 13/43 (30%), Positives = 22/43 (51%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
            +  ++ TG KP+ C  CG+ ++  ++L  H   HTGE     
Sbjct: 1   GSSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.6 bits (91), Expect = 8e-05
 Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
                 GKKP  C  CGK+      LA H   HTG KP    
Sbjct: 3   SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.0 bits (92), Expect = 7e-05
 Identities = 13/43 (30%), Positives = 22/43 (51%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC 370
            +  ++ TG KP+ C  CG+ ++  ++L  H   HTGE     
Sbjct: 1   GSSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.6 bits (91), Expect = 8e-05
 Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTGLKPHCCE 343
                 G+KP  C  CGK+      LA H   HTG KP    
Sbjct: 3   SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A Length = 37

 Score = 38.1 bits (89), Expect = 1e-04
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCH 362
                TG+KP  C  C RS+S + +L +H   H
Sbjct: 2   STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 50/374 (13%), Positives = 99/374 (26%), Gaps = 129/374 (34%)

Query: 16  NIDVIAYG-----------SVCRDVKLHDLP-----------CSVSDEVVLFSNGLFLFV 53
             +V+  G            VC   K+               C+  + V+     L   +
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209

Query: 54  FSFRSENKQIIGDLKVENTVYRIKSKDLLASFS--------SDVWDEE-------RCRSC 98
               +       ++K+     + + + LL S           +V + +        C+  
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI- 268

Query: 99  GLL---SGSIT-----QTYIH---------------------YLECKN--------RGKL 121
            LL      +T      T  H                     YL+C+             
Sbjct: 269 -LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327

Query: 122 YECSLCNESFENKKVL---FRHLRG-KHGMKIKLS---------RHKTKCVCHYCNRT-F 167
              S+  ES  +       ++H+   K    I+ S         R        +   + F
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK------MFDRLSVF 381

Query: 168 DSKAKIQEHIISSHMHEKLYQC-----DFCGSQ---QRTKCRFYYHLRDKHLSKPANLSC 219
              A I   ++S    + +        +        ++        +   +L        
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE------- 434

Query: 220 EFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCH----KPNLTNHIQNV---HLKS- 271
                    K  L +  A+H+       Y   KT+       P L  +  +    HLK+ 
Sbjct: 435 --------LKVKLENEYALHR--SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484

Query: 272 ELEKRTAILKREFI 285
           E  +R  + +  F+
Sbjct: 485 EHPERMTLFRMVFL 498

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 36.4 bits (84), Expect = 6e-04
 Identities = 9/42 (21%), Positives = 17/42 (40%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHT 369
            +  ++  G  P  C  C R ++   YL  H   H  ++  +
Sbjct: 1   GSSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPS 42

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	400
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	100.0
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	100.0
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.97
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.96
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.95
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.92
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.91
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.9
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.9
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.9
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.87
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.87
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.87
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.86
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.86
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.86
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.83
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.82
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.8
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.8
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.78
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.77
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.77
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.76
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.75
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.75
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.75
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.74
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.74
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.73
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.72
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.72
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.7
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.7
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.7
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.68
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.68
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.67
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.65
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.65
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.64
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.64
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.63
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.62
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.61
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.6
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.59
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.57
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.57
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.57
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.57
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.56
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.56
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.56
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.56
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.55
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.54
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.52
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.52
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.52
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.52
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.51
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.5
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.5
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.47
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.46
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.46
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.43
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.43
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.42
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.41
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.4
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.39
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.35
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.34
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.34
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.32
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.31
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.29
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.28
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.28
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.28
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.28
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.28
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.28
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.28
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.28
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.28
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.28
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.28
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.27
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.27
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.27
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.27
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.27
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.27
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.27
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.27
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.27
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.27
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.27
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.27
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.27
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.27
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.27
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.27
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.27
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.27
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.27
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.27
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.26
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.26
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.26
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.26
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.26
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.26
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.26
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.26
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.26
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.25
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.25
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.25
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.25
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.24
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.24
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.24
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.24
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.23
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.23
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.22
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.22
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.21
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.19
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.17
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.17
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.17
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.16
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.15
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.15
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.15
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.15
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.15
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.14
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.14
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.14
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.14
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.14
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.14
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.14
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.14
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.14
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.14
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.13
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.13
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.13
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.13
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.13
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.13
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.13
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.12
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.12
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.12
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.12
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.11
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.11
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.11
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.1
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.1
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.1
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.1
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.1
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.1
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.09
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.09
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.09
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.08
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.08
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.08
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.07
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.07
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.05
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.04
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.04
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.03
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.02
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.02
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.0
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.0
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.97
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.96
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.93
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.92
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.91
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.9
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.9
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.9
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.9
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.89
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.89
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.89
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.89
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.89
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.89
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.88
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.88
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	98.88
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.88
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.88
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.88
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.88
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.88
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.88
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.88
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.88
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.88
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.88
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.87
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	98.87
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.87
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.87
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.87
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.87
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.87
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.87
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.87
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.87
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.87
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.87
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.87
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.87
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.86
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.86
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.86
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.86
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.86
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.86
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.86
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.86
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.86
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.86
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.86
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.86
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.86
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.86
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.86
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.86
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.85
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.85
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.85
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.85
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.85
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.85
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.85
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.85
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.84
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.84
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.84
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.84
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.84
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.84
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.84
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.84
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.84
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.83
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.83
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.83
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.83
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.82
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.82
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.82
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.82
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.82
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.81
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.81
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.81
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.81
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.81
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.8
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.8
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.8
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.78
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.76
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.76
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.76
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.75
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.73
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.71
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.7
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.7
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.7
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.69
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.69
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.68
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.68
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.68
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.68
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.67
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.66
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.66
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.66
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.65
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.64
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.63
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.6
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.57
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.52
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.51
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.51
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.51
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.51
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.5
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.5
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.5
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.49
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.49
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.48
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.47
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.46
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.45
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.45
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.45
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.45
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.44
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.44
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.44
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.41
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.41
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.4
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.39
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.38
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.38
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.31
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.31
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.29
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.27
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.26
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.26
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.24
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.24
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.24
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.21
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.21
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.21
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.21
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.2
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.19
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.19
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.19
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.18
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.18
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.17
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.17
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.17
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.17
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.43
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.13
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.12
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.12
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.11
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.11
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.11
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.38
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.38
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.37
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.09
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.08
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.04
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.24
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.24
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.98
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.83
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.82
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.75
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.58
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	96.84
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.57
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.29
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.29
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.26
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	95.98
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	95.63
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	95.29
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	95.08
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	94.99
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	88.55
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	86.03
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	85.56
2k9h_A	57	Glycoprotein; hantavirus, zinc finger, CCHC, metal	85.49
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	85.41
2k5c_A	95	Uncharacterized protein PF0385; structural genomic	81.92
2djr_A	76	Zinc finger BED domain-containing protein 2; C2H2	81.54
2k9h_A	57	Glycoprotein; hantavirus, zinc finger, CCHC, metal	81.16
2jvx_A	28	NF-kappa-B essential modulator; CCHC classical zin	80.87
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	80.85

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=100.00  E-value=1.8e-37  Score=260.92  Aligned_cols=168  Identities=33%  Similarity=0.634  Sum_probs=110.1

Q ss_pred             ccCcCccccCCHHHHHHHHHHcCCCCceecccccccccChhHHhhhHhhhcchhhHHHHhhhcCCccccccccccccChh
Q psy4576         218 SCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKG  297 (400)
Q Consensus       218 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~  297 (400)
                      .|+.|++.|.+...|..|++.|.+.++|.|+.|++.|.+...|..|+           ..+.++++|.|+.|++.|.+..
T Consensus        23 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~-----------~~h~~~~~~~C~~C~~~f~~~~   91 (190)
T 2i13_A           23 ACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQ-----------RTHTGEKPYKCPECGKSFSQRA   91 (190)
T ss_dssp             --------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHH-----------HHHHCCCCEECTTTCCEESCHH
T ss_pred             cCCCCccccCCHHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHH-----------HhcCCCCCccCcccCCccCCHH
Confidence            44445555555555555555555555566666666666666666665           3333445566666666666666


Q ss_pred             hHHHHHhhhcCCCCCcccccccccCCHHHHHHHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCCcccc
Q psy4576         298 ALTEHHQREHQGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKF  377 (400)
Q Consensus       298 ~l~~H~~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f  377 (400)
                      .|..|+..+++..+|.|+.|++.|.+...|..|+++|++++||.|++|++.|.....|..|+++|+++++|.|++|++.|
T Consensus        92 ~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f  171 (190)
T 2i13_A           92 NLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSF  171 (190)
T ss_dssp             HHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEE
T ss_pred             HHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhcCCCCCeECCCCCCcc
Confidence            66666655555566688888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCchHHHHHHhhhCCCCCC
Q psy4576         378 RQRSSYTLHYKTHHPGVIP  396 (400)
Q Consensus       378 ~~~~~l~~H~~~hh~~~~~  396 (400)
                      .+...|..|+++|++++|+
T Consensus       172 ~~~~~L~~H~~~H~~~k~~  190 (190)
T 2i13_A          172 SRRDALNVHQRTHTGKKTS  190 (190)
T ss_dssp             SSHHHHHHHHTTC------
T ss_pred             CCHHHHHHHHHhcCCCCCC
Confidence            8888888888888888764

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=100.00  E-value=1.1e-36  Score=256.06  Aligned_cols=185  Identities=31%  Similarity=0.557  Sum_probs=131.0

Q ss_pred             HHHHHHhHhhcCCCCCcccCCCCCCccCCHHHHHHHHHhhcCCCCCCcccCcCccccCCHHHHHHHHHHcCCCCceeccc
Q psy4576         170 KAKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYY  249 (400)
Q Consensus       170 ~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  249 (400)
                      ...|..|+ ..|.++++|.|+.|++.|.+...|..|++.+++..+  |.|+.|++.|.+...|..|++.|.++++|.|+.
T Consensus         6 ~~~l~~h~-~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~--~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   82 (190)
T 2i13_A            6 SSSSVAQA-ALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKP--YKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPE   82 (190)
T ss_dssp             --------------------------CCSSHHHHHGGGCC---CC--EECTTTCCEESSHHHHHHHHHHHHCCCCEECTT
T ss_pred             hccchhhh-hhcCCCCCCcCCCCccccCCHHHHHHHHHHcCCCCC--ccCCCcCchhCCHHHHHHHHHhcCCCCCccCcc
Confidence            34566676 667777788888888888888888888877766554  588888888888888888888888888888888


Q ss_pred             ccccccChhHHhhhHhhhcchhhHHHHhhhcCCccccccccccccChhhHHHHHhhhcCCCCCcccccccccCCHHHHHH
Q psy4576         250 CRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGALTEHHQREHQGKKPVCTICGKMLIDKRSLAN  329 (400)
Q Consensus       250 C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~C~~C~~~f~~~~~l~~  329 (400)
                      |++.|.+...|..|+           ..+.++++|.|+.|++.|.+...|..|+..+++..+|.|+.|++.|.+...|..
T Consensus        83 C~~~f~~~~~l~~H~-----------~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~  151 (190)
T 2i13_A           83 CGKSFSQRANLRAHQ-----------RTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHT  151 (190)
T ss_dssp             TCCEESCHHHHHHHH-----------HHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHH
T ss_pred             cCCccCCHHHHHHHH-----------HhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHH
Confidence            888888888888887           445566788899999999998899999866666777899999999999999999


Q ss_pred             HHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcc
Q psy4576         330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSH  368 (400)
Q Consensus       330 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~  368 (400)
                      |+++|++++||.|++|++.|.....|..|+++|+|++||
T Consensus       152 H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~k~~  190 (190)
T 2i13_A          152 HQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKTS  190 (190)
T ss_dssp             HHHHHHCCCCEECTTTCCEESSHHHHHHHHTTC------
T ss_pred             HHHhcCCCCCeECCCCCCccCCHHHHHHHHHhcCCCCCC
Confidence            999999999999999999999999999999999999886

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.97  E-value=1.9e-31  Score=224.07  Aligned_cols=163  Identities=28%  Similarity=0.486  Sum_probs=119.5

Q ss_pred             ccc--CcCccccCCHHHHHHHHHHcCCCCceec--ccccccccChhHHhhhHhhhcchhhHHHHhhhcCCccccc--ccc
Q psy4576         217 LSC--EFCSRIFTKKELLRSHLAVHKIGKNYQC--YYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICD--VCG  290 (400)
Q Consensus       217 ~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~~~~C~--~C~  290 (400)
                      |.|  +.|++.|.+...|..|++.|.++++|.|  +.|++.|.+...|..|+           ..+.++++|.|+  .|+
T Consensus        13 ~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~-----------~~h~~~~~~~C~~~~C~   81 (190)
T 1tf6_A           13 YICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHS-----------LTHTGEKNFTCDSDGCD   81 (190)
T ss_dssp             CBCSSTTTCCBCSSHHHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHH-----------TTTTTCCCEECCSSSCC
T ss_pred             eeCCCCCCcchhCCHHHHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHH-----------HHccCCCceeCCCCCCC
Confidence            455  4555555555555555555555555555  55666666666666665           233334556666  566


Q ss_pred             ccccChhhHHHHHhhhcC--CCCCcc--cccccccCCHHHHHHHHHHhcCCCCeeccc--ccccccChhhHHHHHhhcCC
Q psy4576         291 KSYVRKGALTEHHQREHQ--GKKPVC--TICGKMLIDKRSLANHMNTHTGLKPHCCEI--CGRSYSTAAYLKVHMSCHTG  364 (400)
Q Consensus       291 ~~f~~~~~l~~H~~~~h~--~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~L~~H~~~h~~  364 (400)
                      +.|.+...|..|+...|.  ..+|.|  +.|++.|.+...|..|+++|++++||.|++  |+++|.+.+.|..|+++|++
T Consensus        82 ~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~  161 (190)
T 1tf6_A           82 LRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG  161 (190)
T ss_dssp             CEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHHHHHHHTSSCS
T ss_pred             CccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHHHHHHHHHhCC
Confidence            666666666666645552  345688  889999999999999999999999999988  99999999999999999988


Q ss_pred             CCcccCCC---CccccCCchHHHHHHhhhCCC
Q psy4576         365 ETSHTCHL---CPQKFRQRSSYTLHYKTHHPG  393 (400)
Q Consensus       365 ~~~~~C~~---C~~~f~~~~~l~~H~~~hh~~  393 (400)
                         |.|+.   |++.|.+...|..|+++||++
T Consensus       162 ---~~C~~~~~C~~~f~~~~~l~~H~~~h~~e  190 (190)
T 1tf6_A          162 ---YPCKKDDSCSFVGKTWTLYLKHVAECHQD  190 (190)
T ss_dssp             ---CCCCSTTTCCCCCSCHHHHHHHHTTCC--
T ss_pred             ---CcCCCCCcCCCccccHHHHHHHHHhhcCC
Confidence               89999   999999999999999999874

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.96  E-value=2e-29  Score=211.65  Aligned_cols=170  Identities=26%  Similarity=0.447  Sum_probs=139.5

Q ss_pred             CCCCcccC--CCCCCccCCHHHHHHHHHhhcCCCCCCccc--CcCccccCCHHHHHHHHHHcCCCCceecc--ccccccc
Q psy4576         182 MHEKLYQC--DFCGSQQRTKCRFYYHLRDKHLSKPANLSC--EFCSRIFTKKELLRSHLAVHKIGKNYQCY--YCRKTYC  255 (400)
Q Consensus       182 ~~~~~~~C--~~C~~~f~~~~~l~~H~~~~~~~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~  255 (400)
                      ...++|.|  +.|++.|.+...|..|++.|++.++  |.|  +.|++.|.+...|..|++.|.++++|.|.  .|++.|.
T Consensus         8 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~--~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~   85 (190)
T 1tf6_A            8 VVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKP--FPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFT   85 (190)
T ss_dssp             --CCCCBCSSTTTCCBCSSHHHHHHHHHHHHCCCS--SCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEES
T ss_pred             CCCcceeCCCCCCcchhCCHHHHHHHHHhcCCCCC--ccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccC
Confidence            34677888  5788888888888888888877665  478  77888888888888888888888889998  7999999


Q ss_pred             ChhHHhhhHhhhcchhhHHHHhhhcCCcccc--ccccccccChhhHHHHHhhhcCCCCCcccc--cccccCCHHHHHHHH
Q psy4576         256 HKPNLTNHIQNVHLKSELEKRTAILKREFIC--DVCGKSYVRKGALTEHHQREHQGKKPVCTI--CGKMLIDKRSLANHM  331 (400)
Q Consensus       256 ~~~~l~~H~~~~h~~~~~~~~~~~~~~~~~C--~~C~~~f~~~~~l~~H~~~~h~~~~~~C~~--C~~~f~~~~~l~~H~  331 (400)
                      +...|..|+...|.         .+.++|.|  +.|++.|.+...|..|++.+++.++|.|+.  |++.|.+...|..|+
T Consensus        86 ~~~~l~~H~~~~h~---------~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L~~H~  156 (190)
T 1tf6_A           86 TKANMKKHFNRFHN---------IKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHE  156 (190)
T ss_dssp             CHHHHHHHHHTTSS---------TTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHHHHHHH
T ss_pred             CHHHHHHHHHHhcC---------CCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHHHHHHH
Confidence            99999999855542         23467999  889999999999999986555566779987  999999999999999


Q ss_pred             HHhcCCCCeeccc---ccccccChhhHHHHHhhcCCC
Q psy4576         332 NTHTGLKPHCCEI---CGRSYSTAAYLKVHMSCHTGE  365 (400)
Q Consensus       332 ~~h~~~~~~~C~~---C~~~f~~~~~L~~H~~~h~~~  365 (400)
                      ++|++   |.|..   |++.|.....|..|+++|+++
T Consensus       157 ~~H~~---~~C~~~~~C~~~f~~~~~l~~H~~~h~~e  190 (190)
T 1tf6_A          157 KVHAG---YPCKKDDSCSFVGKTWTLYLKHVAECHQD  190 (190)
T ss_dssp             TSSCS---CCCCSTTTCCCCCSCHHHHHHHHTTCC--
T ss_pred             HHhCC---CcCCCCCcCCCccccHHHHHHHHHhhcCC
Confidence            99987   89999   999999999999999998864

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.95  E-value=1.5e-27  Score=193.50  Aligned_cols=107  Identities=31%  Similarity=0.544  Sum_probs=97.7

Q ss_pred             cccccccccChhhHHHHHhhhcCCCCCcccc--cccccCCHHHHHHHHHHhcCCCCeeccc--ccccccChhhHHHHH-h
Q psy4576         286 CDVCGKSYVRKGALTEHHQREHQGKKPVCTI--CGKMLIDKRSLANHMNTHTGLKPHCCEI--CGRSYSTAAYLKVHM-S  360 (400)
Q Consensus       286 C~~C~~~f~~~~~l~~H~~~~h~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~L~~H~-~  360 (400)
                      |..|++.|.+...|..|++.+++..+|.|++  |++.|.+...|..|+++|+++++|.|++  |+++|.+.+.|..|+ +
T Consensus        42 C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~  121 (155)
T 2gli_A           42 CSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNR  121 (155)
T ss_dssp             CTTTTCCCSSHHHHHHHTHHHHCCCCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHH
T ss_pred             ccchhhhhhhHHHHHHHHHhcCCCCCccCCCCCCCCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHH
Confidence            4455688988899999986666677789985  9999999999999999999999999998  999999999999998 8


Q ss_pred             hcCCCCcccCCC--CccccCCchHHHHHHhhhCC
Q psy4576         361 CHTGETSHTCHL--CPQKFRQRSSYTLHYKTHHP  392 (400)
Q Consensus       361 ~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~hh~  392 (400)
                      +|.++++|.|++  |++.|.+...|..|+++||+
T Consensus       122 ~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~hhg  155 (155)
T 2gli_A          122 THSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG  155 (155)
T ss_dssp             TTCSCCCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             hcCCCCCeeCCCCCCccccCCHHHHHHHHHhhcC
Confidence            999999999998  99999999999999999986

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.92  E-value=5.1e-25  Score=178.48  Aligned_cols=85  Identities=28%  Similarity=0.563  Sum_probs=58.4

Q ss_pred             cCCcccccc--ccccccChhhHHHHHhhhcCCCCCcccc--cccccCCHHHHHHHH-HHhcCCCCeeccc--ccccccCh
Q psy4576         280 LKREFICDV--CGKSYVRKGALTEHHQREHQGKKPVCTI--CGKMLIDKRSLANHM-NTHTGLKPHCCEI--CGRSYSTA  352 (400)
Q Consensus       280 ~~~~~~C~~--C~~~f~~~~~l~~H~~~~h~~~~~~C~~--C~~~f~~~~~l~~H~-~~h~~~~~~~C~~--C~~~f~~~  352 (400)
                      ++++|.|+.  |++.|.+...|..|++.+++..+|.|+.  |++.|.+...|..|+ +.|.+++||.|++  |++.|...
T Consensus        64 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~  143 (155)
T 2gli_A           64 GEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDP  143 (155)
T ss_dssp             CCCCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEESSH
T ss_pred             CCCCccCCCCCCCCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccCCH
Confidence            344455543  5555555555555554433444557776  777777777777777 6788888888887  88888888


Q ss_pred             hhHHHHHhhcCC
Q psy4576         353 AYLKVHMSCHTG  364 (400)
Q Consensus       353 ~~L~~H~~~h~~  364 (400)
                      +.|..|+++|+|
T Consensus       144 ~~L~~H~~~hhg  155 (155)
T 2gli_A          144 SSLRKHVKTVHG  155 (155)
T ss_dssp             HHHHHHHHHSCC
T ss_pred             HHHHHHHHhhcC
Confidence            888888888765

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.91  E-value=2.5e-24  Score=167.47  Aligned_cols=116  Identities=27%  Similarity=0.509  Sum_probs=105.2

Q ss_pred             hcCCccccccccccccChhhHHHHHhhhcCCCCCcccccccccCCHHHHHHHHHH---hcCCCCeecccccccccChhhH
Q psy4576         279 ILKREFICDVCGKSYVRKGALTEHHQREHQGKKPVCTICGKMLIDKRSLANHMNT---HTGLKPHCCEICGRSYSTAAYL  355 (400)
Q Consensus       279 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~---h~~~~~~~C~~C~~~f~~~~~L  355 (400)
                      .++++|.|+.|++.|.+...|..|+..++...+|.|+.|++.|.+...|..|+..   +.++++|.|++|++.|.....|
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l   82 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMEL   82 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHH
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHH
Confidence            3567899999999999999999998666666778999999999999999999985   5788999999999999999999


Q ss_pred             HHHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCC
Q psy4576         356 KVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGV  394 (400)
Q Consensus       356 ~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~  394 (400)
                      ..|+++|++++||.|++|++.|.+...|..|++..|++.
T Consensus        83 ~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~  121 (124)
T 2dlq_A           83 RLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGP  121 (124)
T ss_dssp             HHHHHHHSSSCSEECSSSCCEESSHHHHHHHHHHTSSCS
T ss_pred             HHHHHHcCCCCCccCCCccchhCCHHHHHHHHHHHCCCC
Confidence            999999999999999999999999999999999888764

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.90  E-value=4.6e-24  Score=164.63  Aligned_cols=112  Identities=32%  Similarity=0.635  Sum_probs=103.3

Q ss_pred             hcCCcccccc--ccccccChhhHHHHHhhhcCCCCCccc--ccccccCCHHHHHHHHHHhcCCCCeecccccccccChhh
Q psy4576         279 ILKREFICDV--CGKSYVRKGALTEHHQREHQGKKPVCT--ICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAY  354 (400)
Q Consensus       279 ~~~~~~~C~~--C~~~f~~~~~l~~H~~~~h~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~  354 (400)
                      .++++|.|+.  |++.|.+...|..|+..+++..+|.|+  .|++.|.+...|..|+++|+++++|.|++|++.|.....
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~   81 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDH   81 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHH
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCchhCCHHH
Confidence            3567899987  999999999999998666666778999  799999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCCcccC--CCCccccCCchHHHHHHhhh
Q psy4576         355 LKVHMSCHTGETSHTC--HLCPQKFRQRSSYTLHYKTH  390 (400)
Q Consensus       355 L~~H~~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~h  390 (400)
                      |..|+++|+++++|.|  +.|++.|.+...|..|+++|
T Consensus        82 l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           82 LKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             HHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             HHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence            9999999999999999  89999999999999999876

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.90  E-value=6.5e-24  Score=171.88  Aligned_cols=118  Identities=30%  Similarity=0.552  Sum_probs=106.3

Q ss_pred             cCCccccccccccccChhhHHHHHhhhcCCCC---------CcccccccccCCHHHHHHHHHHhcCCCCeeccc--cccc
Q psy4576         280 LKREFICDVCGKSYVRKGALTEHHQREHQGKK---------PVCTICGKMLIDKRSLANHMNTHTGLKPHCCEI--CGRS  348 (400)
Q Consensus       280 ~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~---------~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~  348 (400)
                      ...+|.|..|++.|.+...|..|+...|.+.+         +.|+.|++.|.+...|..|+++|+++++|.|.+  |++.
T Consensus        22 ~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~  101 (155)
T 2rpc_A           22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKI  101 (155)
T ss_dssp             TCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTCCE
T ss_pred             hhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCCCCCc
Confidence            34678899999999999999999866576654         689999999999999999999999999999998  9999


Q ss_pred             ccChhhHHHHHhhcCCCCcccCCC--CccccCCchHHHHHHhhhCCCCCCC
Q psy4576         349 YSTAAYLKVHMSCHTGETSHTCHL--CPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       349 f~~~~~L~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      |.....|..|+++|+++++|.|++  |++.|.+...|..|+++|++++|++
T Consensus       102 f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~  152 (155)
T 2rpc_A          102 FARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGP  152 (155)
T ss_dssp             ESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCCCSC
T ss_pred             cCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCCCCCC
Confidence            999999999999999999999997  9999999999999999999998875

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.90  E-value=4e-24  Score=166.30  Aligned_cols=115  Identities=31%  Similarity=0.608  Sum_probs=101.0

Q ss_pred             CCccccc--cccccccChhhHHHHHhhhcCCCCCcccccccccCCHHHHHHHHHHhcCCCCeeccc--ccccccChhhHH
Q psy4576         281 KREFICD--VCGKSYVRKGALTEHHQREHQGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEI--CGRSYSTAAYLK  356 (400)
Q Consensus       281 ~~~~~C~--~C~~~f~~~~~l~~H~~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~L~  356 (400)
                      +++|.|+  .|++.|.+...|..|+ ..|...+|.|+.|++.|.+...|..|+++|+++++|.|++  |++.|.....|.
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~-~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~   81 (124)
T 1ubd_C            3 PRTIACPHKGCTKMFRDNSAMRKHL-HTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLR   81 (124)
T ss_dssp             --CEECCSTTCCCEESSHHHHHHHH-GGGSCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHHH
T ss_pred             CCcccCCCCCCcCccCCHHHHHHHH-HHcCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHHH
Confidence            4679998  8999999999999998 5667777899999999999999999999999999999986  999999999999


Q ss_pred             HHHhhcCCCCcccCC--CCccccCCchHHHHHHhhhCCCCCC
Q psy4576         357 VHMSCHTGETSHTCH--LCPQKFRQRSSYTLHYKTHHPGVIP  396 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~hh~~~~~  396 (400)
                      .|+++|+++++|.|+  .|++.|.+...|..|+++|++++++
T Consensus        82 ~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~k~~  123 (124)
T 1ubd_C           82 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN  123 (124)
T ss_dssp             HHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC-----
T ss_pred             HHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHcccccC
Confidence            999999999999996  4999999999999999999998875

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.87  E-value=4.3e-23  Score=161.09  Aligned_cols=106  Identities=24%  Similarity=0.365  Sum_probs=90.9

Q ss_pred             HhhhcCCccccccccccccChhhHHHHHhhhcCCCCCcccccccccCCHHHHHHHHHHhcCCCCeecccccccccChhhH
Q psy4576         276 RTAILKREFICDVCGKSYVRKGALTEHHQREHQGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYL  355 (400)
Q Consensus       276 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L  355 (400)
                      ..+.|+++|.|++|++.|.+...|..|++.+.++++|.|+.|++.|.....|..|+++|++++||.|++|+++|...+.|
T Consensus        15 ~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L   94 (133)
T 2lt7_A           15 LIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFM   94 (133)
T ss_dssp             EEETTEEEEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEESSHHHH
T ss_pred             eecCCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCCccccCCCCCCCcCCHHHH
Confidence            45667888999999999999999999985444555679999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCCC------cccCCCCccccCCch
Q psy4576         356 KVHMSCHTGET------SHTCHLCPQKFRQRS  381 (400)
Q Consensus       356 ~~H~~~h~~~~------~~~C~~C~~~f~~~~  381 (400)
                      ..|+++|++++      +|+|.+|++.|....
T Consensus        95 ~~H~~~hh~~~p~~~~k~~~C~~C~k~~~~~~  126 (133)
T 2lt7_A           95 SSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQY  126 (133)
T ss_dssp             HHHHHHHTCCCTTSSSCCEEECCCCSSCCCCC
T ss_pred             HHHhHHhcCCCCCCCCCCeecCCCCchhhhcc
Confidence            99999988764      589999998886543

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.87  E-value=2.5e-22  Score=162.56  Aligned_cols=128  Identities=27%  Similarity=0.413  Sum_probs=98.4

Q ss_pred             CCceecccccccccChhHHhhhHhhhcchhhHHHHhhhcCCccccccccccccChhhHHHHHhhhcCCCCCcccc--ccc
Q psy4576         242 GKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGALTEHHQREHQGKKPVCTI--CGK  319 (400)
Q Consensus       242 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~C~~--C~~  319 (400)
                      ..+|.|..|++.|.+...|..|++..|.....  ........|.|+.|++.|.+...|..|++.++..++|.|+.  |++
T Consensus        23 ~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~--~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~  100 (155)
T 2rpc_A           23 QLSRPKKSCDRTFSTMHELVTHVTMEHVGGPE--QNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGK  100 (155)
T ss_dssp             CCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTT--CSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTCC
T ss_pred             hcccccccCCcccCCHHHHHHHHHhhcCCCcc--cCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCCCCC
Confidence            34455555666665555566665443322100  00001123789999999999999999986666667789998  999


Q ss_pred             ccCCHHHHHHHHHHhcCCCCeeccc--ccccccChhhHHHHHhhcCCCCcccCC
Q psy4576         320 MLIDKRSLANHMNTHTGLKPHCCEI--CGRSYSTAAYLKVHMSCHTGETSHTCH  371 (400)
Q Consensus       320 ~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~L~~H~~~h~~~~~~~C~  371 (400)
                      .|.....|..|+++|+++++|.|.+  |++.|.....|..|+++|++++||.|+
T Consensus       101 ~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~c~  154 (155)
T 2rpc_A          101 IFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS  154 (155)
T ss_dssp             EESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCCCSCSC
T ss_pred             ccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCCCCCCCC
Confidence            9999999999999999999999997  999999999999999999999999996

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.87  E-value=7e-23  Score=159.92  Aligned_cols=96  Identities=26%  Similarity=0.427  Sum_probs=88.9

Q ss_pred             HHhhhcCCC-CCcccccccccCCHHHHHHHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCCccccCCc
Q psy4576         302 HHQREHQGK-KPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQR  380 (400)
Q Consensus       302 H~~~~h~~~-~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~  380 (400)
                      |...+|.|+ +|.|++|++.|.....|..|+++|++++||.|++|+++|.+.+.|..|+++|++++||.|++|++.|.+.
T Consensus        12 h~~~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~   91 (133)
T 2lt7_A           12 HYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINY   91 (133)
T ss_dssp             EEEEEETTEEEEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEESSH
T ss_pred             hceeecCCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCCccccCCCCCCCcCCH
Confidence            334566655 5699999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhhCCCCCCC
Q psy4576         381 SSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       381 ~~l~~H~~~hh~~~~~~  397 (400)
                      +.|..|+++||+++|+.
T Consensus        92 ~~L~~H~~~hh~~~p~~  108 (133)
T 2lt7_A           92 QFMSSHIKSVHSQDPSG  108 (133)
T ss_dssp             HHHHHHHHHHTCCCTTS
T ss_pred             HHHHHHhHHhcCCCCCC
Confidence            99999999999988754

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.86  E-value=5.9e-22  Score=152.74  Aligned_cols=112  Identities=28%  Similarity=0.579  Sum_probs=94.9

Q ss_pred             CCCCceeccc--ccccccChhHHhhhHhhhcchhhHHHHhhhcCCccccc--cccccccChhhHHHHHhhhcCCCCCccc
Q psy4576         240 KIGKNYQCYY--CRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICD--VCGKSYVRKGALTEHHQREHQGKKPVCT  315 (400)
Q Consensus       240 ~~~~~~~C~~--C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~~h~~~~~~C~  315 (400)
                      .++++|.|.+  |++.|.+...|..|+           ..+.++++|.|+  .|++.|.+...|..|+..+++..+|.|+
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~-----------~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   70 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHS-----------RKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCK   70 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHH-----------HHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECT
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHH-----------HhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCC
Confidence            3567788876  888888888888887           444556778888  6888888888888888666666778999


Q ss_pred             ccccccCCHHHHHHHHHHhcCCCCeec--ccccccccChhhHHHHHhhc
Q psy4576         316 ICGKMLIDKRSLANHMNTHTGLKPHCC--EICGRSYSTAAYLKVHMSCH  362 (400)
Q Consensus       316 ~C~~~f~~~~~l~~H~~~h~~~~~~~C--~~C~~~f~~~~~L~~H~~~h  362 (400)
                      .|++.|.....|..|+++|+++++|.|  +.|++.|.+...|..|+++|
T Consensus        71 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           71 TCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             TTCCEESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             ccCchhCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence            999999999999999999999999999  89999999999999999876

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.86  E-value=3.6e-22  Score=155.15  Aligned_cols=116  Identities=27%  Similarity=0.548  Sum_probs=91.1

Q ss_pred             CCceecc--cccccccChhHHhhhHhhhcchhhHHHHhhhcCCccccccccccccChhhHHHHHhhhcCCCCCcccc--c
Q psy4576         242 GKNYQCY--YCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYVRKGALTEHHQREHQGKKPVCTI--C  317 (400)
Q Consensus       242 ~~~~~C~--~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~C~~--C  317 (400)
                      +++|.|+  .|++.|.+...|..|++           .+ +.++|.|+.|++.|.+...|..|+..+++..+|.|+.  |
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~-----------~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C   70 (124)
T 1ubd_C            3 PRTIACPHKGCTKMFRDNSAMRKHLH-----------TH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGC   70 (124)
T ss_dssp             --CEECCSTTCCCEESSHHHHHHHHG-----------GG-SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTC
T ss_pred             CCcccCCCCCCcCccCCHHHHHHHHH-----------Hc-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCC
Confidence            4678888  78888888888888873           23 4567888888888888888888875555556679976  9


Q ss_pred             ccccCCHHHHHHHHHHhcCCCCeecc--cccccccChhhHHHHHhhcCCCCccc
Q psy4576         318 GKMLIDKRSLANHMNTHTGLKPHCCE--ICGRSYSTAAYLKVHMSCHTGETSHT  369 (400)
Q Consensus       318 ~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~L~~H~~~h~~~~~~~  369 (400)
                      ++.|.....|..|+++|+++++|.|+  .|++.|.+.+.|..|+++|+++++++
T Consensus        71 ~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~k~~q  124 (124)
T 1ubd_C           71 GKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ  124 (124)
T ss_dssp             CCEESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC------
T ss_pred             cCccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHcccccCC
Confidence            99999999999999999999999996  49999999999999999999988763

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.86  E-value=2.1e-21  Score=150.83  Aligned_cols=118  Identities=23%  Similarity=0.360  Sum_probs=92.1

Q ss_pred             CcccccccCcccccccChhHHHHHHhhhcCCCCcccccccccccCChHHHHHHhhhhcCCcccccCCCCccccccccccc
Q psy4576          88 DVWDEERCRSCGLLSGSITQTYIHYLECKNRGKLYECSLCNESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCHYCNRTF  167 (400)
Q Consensus        88 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~~C~~~f  167 (400)
                      .++++|.|+.|++.|.+...|..| +..|.++++|.|++|++.|.+...|..|++.++..     ....+|.|++|++.|
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H-~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~-----~~~~~~~C~~C~~~f   76 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVH-NRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMN-----RSEQVFTCSVCQETF   76 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHH-HHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCC-----SCCCCEECSSSCCEE
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHH-HHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcC-----CCCCCeECCCCCCcc
Confidence            356778888888888888888888 67788888888888888888888888888865321     112345788888888


Q ss_pred             cCHHHHHHhHhhcCCCCCcccCCCCCCccCCHHHHHHHHHhhcCC
Q psy4576         168 DSKAKIQEHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLS  212 (400)
Q Consensus       168 ~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~  212 (400)
                      .+...|..|+ ..|.++++|.|++|++.|.+...|..|++..|..
T Consensus        77 ~~~~~l~~H~-~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  120 (124)
T 2dlq_A           77 RRRMELRLHM-VSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG  120 (124)
T ss_dssp             SSHHHHHHHH-HHHSSSCSEECSSSCCEESSHHHHHHHHHHTSSC
T ss_pred             CCHHHHHHHH-HHcCCCCCccCCCccchhCCHHHHHHHHHHHCCC
Confidence            8888888887 6777888888888888888888888888765543

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.83  E-value=1.4e-20  Score=138.98  Aligned_cols=90  Identities=31%  Similarity=0.643  Sum_probs=82.7

Q ss_pred             CCCCCcccccccccCCHHHHHHHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCCccccCCchHHHHHH
Q psy4576         308 QGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHY  387 (400)
Q Consensus       308 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~  387 (400)
                      ...+|.|+.|++.|.+...|..|++.|.++++|.|++|++.|.....|..|+++|+++++|.|++|++.|.+...|..|+
T Consensus         5 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~   84 (96)
T 2dmd_A            5 SSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHL   84 (96)
T ss_dssp             CCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSHHHHHHHH
T ss_pred             CCcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhCCCCCCC
Q psy4576         388 KTHHPGVIPP  397 (400)
Q Consensus       388 ~~hh~~~~~~  397 (400)
                      ++|+++.+|.
T Consensus        85 ~~h~~~~~p~   94 (96)
T 2dmd_A           85 RSHTGDSGPS   94 (96)
T ss_dssp             TTCCSCCCCC
T ss_pred             HHhcCCCCCC
Confidence            9999988775

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.82  E-value=4e-20  Score=139.26  Aligned_cols=91  Identities=26%  Similarity=0.541  Sum_probs=83.0

Q ss_pred             CCCCCcccccccccCCHHHHHHHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCCccccCCchHHHHHH
Q psy4576         308 QGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHY  387 (400)
Q Consensus       308 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~  387 (400)
                      ..++|.|+.|++.|.....|..|+++|+++++|.|++|++.|.....|..|+++|+++++|.|++|++.|.+...|..|+
T Consensus        14 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~   93 (106)
T 2ee8_A           14 TKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHK   93 (106)
T ss_dssp             CCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSHHHHHHHH
T ss_pred             CCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccCHHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhCCCCCCCC
Q psy4576         388 KTHHPGVIPPK  398 (400)
Q Consensus       388 ~~hh~~~~~~~  398 (400)
                      ++|++++|+..
T Consensus        94 ~~H~~~~~~~~  104 (106)
T 2ee8_A           94 TLHMQTSSPTA  104 (106)
T ss_dssp             HHTTSCCCCCC
T ss_pred             HHhCCCCCCcC
Confidence            99999988753

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.80  E-value=4.1e-20  Score=132.19  Aligned_cols=82  Identities=32%  Similarity=0.675  Sum_probs=76.3

Q ss_pred             CCcccccccccCCHHHHHHHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCCccccCCchHHHHHHhhh
Q psy4576         311 KPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH  390 (400)
Q Consensus       311 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  390 (400)
                      +|.|+.|++.|.+...|..|+++|.++++|.|+.|++.|.....|..|+++|+++++|.|++|++.|.+...|..|+++|
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   80 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH   80 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHHHHHHHHH
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHHHHHHHhh
Confidence            36799999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CC
Q psy4576         391 HP  392 (400)
Q Consensus       391 h~  392 (400)
                      ++
T Consensus        81 ~g   82 (82)
T 2kmk_A           81 TG   82 (82)
T ss_dssp             C-
T ss_pred             CC
Confidence            75

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.80  E-value=6.5e-20  Score=133.68  Aligned_cols=85  Identities=33%  Similarity=0.654  Sum_probs=75.0

Q ss_pred             CCCccc--ccccccCCHHHHHHHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCCccccCCchHHHHHH
Q psy4576         310 KKPVCT--ICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHY  387 (400)
Q Consensus       310 ~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~  387 (400)
                      ++|.|+  .|++.|.....|..|+++|.++++|.|++|++.|.....|..|+++|+++++|.|++|++.|.+...|..|+
T Consensus         3 k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~   82 (90)
T 1a1h_A            3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHT   82 (90)
T ss_dssp             CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHH
T ss_pred             CceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhCCHHHHHHHH
Confidence            466887  599999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhCCCC
Q psy4576         388 KTHHPGV  394 (400)
Q Consensus       388 ~~hh~~~  394 (400)
                      ++|++++
T Consensus        83 ~~H~~~k   89 (90)
T 1a1h_A           83 KIHLRQK   89 (90)
T ss_dssp             GGGGC--
T ss_pred             HHhcccC
Confidence            9998865

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.78  E-value=3.1e-19  Score=131.49  Aligned_cols=87  Identities=29%  Similarity=0.603  Sum_probs=78.0

Q ss_pred             CCCCcccccccccCCHHHHHHHHHHhcCCCCeecccccccccChhhHHHHHhhcCCC--CcccCCCCccccCCchHHHHH
Q psy4576         309 GKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGE--TSHTCHLCPQKFRQRSSYTLH  386 (400)
Q Consensus       309 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~--~~~~C~~C~~~f~~~~~l~~H  386 (400)
                      ..+|.|+.|++.|.+...|..|+++|+++++|.|++|++.|.....|..|++.|+++  ++|.|++|++.|.+...|..|
T Consensus         5 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~L~~H   84 (95)
T 2yt9_A            5 SSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGH   84 (95)
T ss_dssp             CSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHHHHHH
T ss_pred             CCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHHHHHH
Confidence            456689999999999999999999999999999999999999999999999999987  899999999999999999999


Q ss_pred             HhhhCCCCC
Q psy4576         387 YKTHHPGVI  395 (400)
Q Consensus       387 ~~~hh~~~~  395 (400)
                      ++..|++.+
T Consensus        85 ~~~~H~~~~   93 (95)
T 2yt9_A           85 IKQVHSGPS   93 (95)
T ss_dssp             HHHTSCCCS
T ss_pred             HHHhcCCCC
Confidence            987676543

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.77  E-value=3.4e-20  Score=141.84  Aligned_cols=102  Identities=14%  Similarity=0.080  Sum_probs=85.5

Q ss_pred             hhhHHHHHhhhcCCCCCcccccccccCCHHHHHHHHHH--hcCCCCee-cccccccc--cChhhHHHHHhhcCCCCcccC
Q psy4576         296 KGALTEHHQREHQGKKPVCTICGKMLIDKRSLANHMNT--HTGLKPHC-CEICGRSY--STAAYLKVHMSCHTGETSHTC  370 (400)
Q Consensus       296 ~~~l~~H~~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~-C~~C~~~f--~~~~~L~~H~~~h~~~~~~~C  370 (400)
                      ...|..|++.+.+.++|.|+.|++.|.....|..|++.  |.+.+++. |++|++.|  .....|..|+++|++++||.|
T Consensus         4 ~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~C   83 (115)
T 2dmi_A            4 GSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKC   83 (115)
T ss_dssp             CCCCCCCCCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSCBC
T ss_pred             chhhhhheeeeCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcceEC
Confidence            34566777444445566999999999999999999988  77777654 99999998  899999999999999999999


Q ss_pred             CCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         371 HLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       371 ~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      ++|++.|.+...|..|+++||.....+
T Consensus        84 ~~C~k~f~~~~~L~~H~~~hh~~~~~~  110 (115)
T 2dmi_A           84 MYCGHSFESLQDLSVHMIKTKHYQKVS  110 (115)
T ss_dssp             SSSCCBCSSHHHHHHHHHHTTTTTCSC
T ss_pred             CCCCCccCCHHHHHHHHHHhCCcccCC
Confidence            999999999999999999998765443

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.77  E-value=7.4e-19  Score=132.24  Aligned_cols=92  Identities=29%  Similarity=0.599  Sum_probs=84.5

Q ss_pred             hcCCccccccccccccChhhHHHHHhhhcCCCCCcccccccccCCHHHHHHHHHHhcCCCCeecccccccccChhhHHHH
Q psy4576         279 ILKREFICDVCGKSYVRKGALTEHHQREHQGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVH  358 (400)
Q Consensus       279 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H  358 (400)
                      ..+++|.|+.|++.|.+...|..|++.++...+|.|+.|++.|.....|..|+++|+++++|.|.+|++.|.....|..|
T Consensus        13 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H   92 (106)
T 2ee8_A           13 KTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVH   92 (106)
T ss_dssp             CCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSHHHHHHH
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccCHHHHHHH
Confidence            45678999999999999999999986666677789999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCCcccC
Q psy4576         359 MSCHTGETSHTC  370 (400)
Q Consensus       359 ~~~h~~~~~~~C  370 (400)
                      +++|+++++|.+
T Consensus        93 ~~~H~~~~~~~~  104 (106)
T 2ee8_A           93 KTLHMQTSSPTA  104 (106)
T ss_dssp             HHHTTSCCCCCC
T ss_pred             HHHhCCCCCCcC
Confidence            999999999865

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.76  E-value=1.5e-18  Score=127.96  Aligned_cols=90  Identities=30%  Similarity=0.564  Sum_probs=82.3

Q ss_pred             hcCCccccccccccccChhhHHHHHhhhcCCCCCcccccccccCCHHHHHHHHHHhcCCCCeecccccccccChhhHHHH
Q psy4576         279 ILKREFICDVCGKSYVRKGALTEHHQREHQGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVH  358 (400)
Q Consensus       279 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H  358 (400)
                      .++++|.|+.|++.|.+...|..|++.++...+|.|+.|++.|.....|..|+++|+++++|.|++|++.|.....|..|
T Consensus         4 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H   83 (96)
T 2dmd_A            4 GSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVH   83 (96)
T ss_dssp             CCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSHHHHHHH
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHH
Confidence            45688999999999999999999986655667789999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCCcc
Q psy4576         359 MSCHTGETSH  368 (400)
Q Consensus       359 ~~~h~~~~~~  368 (400)
                      +++|+++++.
T Consensus        84 ~~~h~~~~~p   93 (96)
T 2dmd_A           84 LRSHTGDSGP   93 (96)
T ss_dssp             HTTCCSCCCC
T ss_pred             HHHhcCCCCC
Confidence            9999998653

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.75  E-value=9.1e-19  Score=115.36  Aligned_cols=58  Identities=31%  Similarity=0.630  Sum_probs=51.1

Q ss_pred             CCCeecccccccccChhhHHHHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCC
Q psy4576         337 LKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGV  394 (400)
Q Consensus       337 ~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~  394 (400)
                      |+||.|.+||++|...+.|..|+++|+|++||.|++||++|...+.|..|+++|.+++
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            6889999999999999999999999999999999999999999999999998887653

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.75  E-value=1.5e-18  Score=131.55  Aligned_cols=84  Identities=32%  Similarity=0.652  Sum_probs=76.7

Q ss_pred             CCCCcccccccccCCHHHHHHHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCCccccCCchHHHHHHh
Q psy4576         309 GKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYK  388 (400)
Q Consensus       309 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~  388 (400)
                      .++|.| .|++.|.....|..|++.|.++++|.|++|++.|.....|..|+++|+++++|.|++|++.|.....|..|++
T Consensus         8 ~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~   86 (110)
T 2csh_A            8 DKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVT   86 (110)
T ss_dssp             CCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCEec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcCHHHHHHHHH
Confidence            345689 8999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCC
Q psy4576         389 THHPG  393 (400)
Q Consensus       389 ~hh~~  393 (400)
                      +||+.
T Consensus        87 ~~~~~   91 (110)
T 2csh_A           87 SCTKS   91 (110)
T ss_dssp             HHHHH
T ss_pred             Hcccc
Confidence            98853

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.75  E-value=1.9e-18  Score=125.84  Aligned_cols=86  Identities=31%  Similarity=0.657  Sum_probs=76.9

Q ss_pred             CCccccc--cccccccChhhHHHHHhhhcCCCCCcccccccccCCHHHHHHHHHHhcCCCCeecccccccccChhhHHHH
Q psy4576         281 KREFICD--VCGKSYVRKGALTEHHQREHQGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVH  358 (400)
Q Consensus       281 ~~~~~C~--~C~~~f~~~~~l~~H~~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H  358 (400)
                      +++|.|+  .|++.|.+...|..|++.++...+|.|+.|++.|.+...|..|+++|+++++|.|++|++.|...+.|..|
T Consensus         2 ~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H   81 (90)
T 1a1h_A            2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH   81 (90)
T ss_dssp             -CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHH
T ss_pred             CCceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhCCHHHHHHH
Confidence            5789998  59999999999999986666667789999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCC
Q psy4576         359 MSCHTGET  366 (400)
Q Consensus       359 ~~~h~~~~  366 (400)
                      +++|++++
T Consensus        82 ~~~H~~~k   89 (90)
T 1a1h_A           82 TKIHLRQK   89 (90)
T ss_dssp             HGGGGC--
T ss_pred             HHHhcccC
Confidence            99999875

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.74  E-value=1.3e-18  Score=131.00  Aligned_cols=74  Identities=19%  Similarity=0.306  Sum_probs=38.7

Q ss_pred             CcccccccccCCHHHHHHHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCCccccCCchHHHHHHh
Q psy4576         312 PVCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYK  388 (400)
Q Consensus       312 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~  388 (400)
                      |.|+.|++.|.....|..|+++|.  ++|.|.+|++.|.....|..|++ |+++++|.|++|++.|.+...|..|++
T Consensus        17 ~~C~~C~~~f~~~~~l~~H~~~H~--~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~~~f~~~~~L~~H~~   90 (107)
T 1wjp_A           17 YQCRLCNAKLSSLLEQGSHERLCR--NAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMRTFKSSFSIWRHQV   90 (107)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHHH--HSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGTEECSSHHHHHHHHH
T ss_pred             eECCCCCCccCCHHHHHHHHHHCC--CCccCCCCCCccCCHHHHHHHHH-cCCCCCccCccccchhCCHHHHHHHHH
Confidence            355555555555555555555442  34555555555555555555553 555555555555555555555555554

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.74  E-value=2.6e-18  Score=122.69  Aligned_cols=82  Identities=37%  Similarity=0.750  Sum_probs=74.2

Q ss_pred             ccccccccccccChhhHHHHHhhhcCCCCCcccccccccCCHHHHHHHHHHhcCCCCeecccccccccChhhHHHHHhhc
Q psy4576         283 EFICDVCGKSYVRKGALTEHHQREHQGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCH  362 (400)
Q Consensus       283 ~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h  362 (400)
                      ||.|+.|++.|.+...|..|++.++...+|.|+.|++.|.....|..|++.|+++++|.|++|++.|.+.+.|..|+++|
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   80 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH   80 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHHHHHHHHH
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHHHHHHHhh
Confidence            57899999999999999999866666677899999999999999999999999999999999999999999999999998


Q ss_pred             CC
Q psy4576         363 TG  364 (400)
Q Consensus       363 ~~  364 (400)
                      +|
T Consensus        81 ~g   82 (82)
T 2kmk_A           81 TG   82 (82)
T ss_dssp             C-
T ss_pred             CC
Confidence            75

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.73  E-value=8.3e-18  Score=124.99  Aligned_cols=84  Identities=30%  Similarity=0.593  Sum_probs=76.5

Q ss_pred             CCCCcccc--cccccCCHHHHHHHHHHhcCCCCeecc--cccccccChhhHHHHHhhcCCCCcccCCCCccccCCchHHH
Q psy4576         309 GKKPVCTI--CGKMLIDKRSLANHMNTHTGLKPHCCE--ICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYT  384 (400)
Q Consensus       309 ~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~  384 (400)
                      .+.|.|+.  |++.|.....|..|++.|.++++|.|+  .|++.|.....|..|+++|+++++|.|++|++.|.+...|.
T Consensus        13 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~   92 (100)
T 2ebt_A           13 RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLA   92 (100)
T ss_dssp             CCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCSSHHHHH
T ss_pred             CcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccCCHHHHH
Confidence            34568886  999999999999999999999999996  59999999999999999999999999999999999999999


Q ss_pred             HHHhhhCC
Q psy4576         385 LHYKTHHP  392 (400)
Q Consensus       385 ~H~~~hh~  392 (400)
                      .|+++|++
T Consensus        93 ~H~~~H~~  100 (100)
T 2ebt_A           93 LHMKRHQN  100 (100)
T ss_dssp             HHHHHHCC
T ss_pred             HHHHHhCC
Confidence            99999874

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.72  E-value=3.6e-18  Score=128.63  Aligned_cols=93  Identities=15%  Similarity=0.265  Sum_probs=81.1

Q ss_pred             HhhhcCCccccccccccccChhhHHHHHhhhcCCCCCcccccccccCCHHHHHHHHHHhcCCCCeecccccccccChhhH
Q psy4576         276 RTAILKREFICDVCGKSYVRKGALTEHHQREHQGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYL  355 (400)
Q Consensus       276 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L  355 (400)
                      +.+.++++|.|+.|++.|.....|..|++. | .++|.|+.|++.|.....|..|+. |++++||.|++|++.|.....|
T Consensus         9 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~-H-~~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~~~f~~~~~L   85 (107)
T 1wjp_A            9 SPVENKEVYQCRLCNAKLSSLLEQGSHERL-C-RNAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMRTFKSSFSI   85 (107)
T ss_dssp             CCCCCCCCCBCTTTCCBCSSHHHHHHHHHH-H-HHSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGTEECSSHHHH
T ss_pred             cccCCCcCeECCCCCCccCCHHHHHHHHHH-C-CCCccCCCCCCccCCHHHHHHHHH-cCCCCCccCccccchhCCHHHH
Confidence            345667889999999999999999999744 5 357899999999999999999995 9999999999999999999999


Q ss_pred             HHHHh-hcCCCCcccCC
Q psy4576         356 KVHMS-CHTGETSHTCH  371 (400)
Q Consensus       356 ~~H~~-~h~~~~~~~C~  371 (400)
                      ..|++ +|.++++|.|.
T Consensus        86 ~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           86 WRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             HHHHHHTSCCCCCCCCC
T ss_pred             HHHHHHHcCCCCCCCCC
Confidence            99997 89999999875

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.72  E-value=5.5e-18  Score=123.03  Aligned_cols=81  Identities=33%  Similarity=0.681  Sum_probs=71.3

Q ss_pred             CCCcccc--cccccCCHHHHHHHHHHhcCCCCeecc--cccccccChhhHHHHHhhcCCCCcccCCCCccccCCchHHHH
Q psy4576         310 KKPVCTI--CGKMLIDKRSLANHMNTHTGLKPHCCE--ICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTL  385 (400)
Q Consensus       310 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~  385 (400)
                      ..|.|+.  |++.|.+...|..|++.|.++++|.|+  .|++.|.....|..|+++|+++++|.|++|++.|.+...|..
T Consensus         4 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~   83 (89)
T 2wbs_A            4 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLAL   83 (89)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHH
T ss_pred             CCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccCCHHHHHH
Confidence            4567888  888888888888888888888899997  599999999999999999999999999999999999999999


Q ss_pred             HHhhh
Q psy4576         386 HYKTH  390 (400)
Q Consensus       386 H~~~h  390 (400)
                      |+++|
T Consensus        84 H~~~H   88 (89)
T 2wbs_A           84 HMKRH   88 (89)
T ss_dssp             HGGGG
T ss_pred             HHHhh
Confidence            98887

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.70  E-value=8.9e-19  Score=133.88  Aligned_cols=96  Identities=22%  Similarity=0.218  Sum_probs=74.0

Q ss_pred             HhhhcCCccccccccccccChhhHHHHHhh--hcCCCCC-ccccccccc--CCHHHHHHHHHHhcCCCCeeccccccccc
Q psy4576         276 RTAILKREFICDVCGKSYVRKGALTEHHQR--EHQGKKP-VCTICGKML--IDKRSLANHMNTHTGLKPHCCEICGRSYS  350 (400)
Q Consensus       276 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~--~h~~~~~-~C~~C~~~f--~~~~~l~~H~~~h~~~~~~~C~~C~~~f~  350 (400)
                      +.+.++++|.|+.|++.|.+...|..|++.  +....++ .|+.|++.|  .....|..|+++|++++||.|++|++.|.
T Consensus        12 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~   91 (115)
T 2dmi_A           12 SIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFE   91 (115)
T ss_dssp             CCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSCBCSSSCCBCS
T ss_pred             eeeCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcceECCCCCCccC
Confidence            344556677777777777777777777643  2223334 588898888  88888899999999999999999999999


Q ss_pred             ChhhHHHHHhhcCCCCcccCC
Q psy4576         351 TAAYLKVHMSCHTGETSHTCH  371 (400)
Q Consensus       351 ~~~~L~~H~~~h~~~~~~~C~  371 (400)
                      ....|..|++.|+......++
T Consensus        92 ~~~~L~~H~~~hh~~~~~~~~  112 (115)
T 2dmi_A           92 SLQDLSVHMIKTKHYQKVSGP  112 (115)
T ss_dssp             SHHHHHHHHHHTTTTTCSCCC
T ss_pred             CHHHHHHHHHHhCCcccCCCC
Confidence            999999999988876655554

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.70  E-value=2.7e-17  Score=120.94  Aligned_cols=87  Identities=28%  Similarity=0.592  Sum_probs=76.1

Q ss_pred             hcCCccccccccccccChhhHHHHHhhhcCCCCCcccccccccCCHHHHHHHHHHhcCC--CCeecccccccccChhhHH
Q psy4576         279 ILKREFICDVCGKSYVRKGALTEHHQREHQGKKPVCTICGKMLIDKRSLANHMNTHTGL--KPHCCEICGRSYSTAAYLK  356 (400)
Q Consensus       279 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~--~~~~C~~C~~~f~~~~~L~  356 (400)
                      .++++|.|+.|++.|.+...|..|++.++...+|.|+.|++.|.....|..|++.|+++  ++|.|++|++.|.....|.
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~L~   82 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLN   82 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHHHH
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHHHH
Confidence            35678999999999999999999986555566779999999999999999999999987  8999999999999999999


Q ss_pred             HHHh-hcCCC
Q psy4576         357 VHMS-CHTGE  365 (400)
Q Consensus       357 ~H~~-~h~~~  365 (400)
                      .|++ .|.++
T Consensus        83 ~H~~~~H~~~   92 (95)
T 2yt9_A           83 GHIKQVHSGP   92 (95)
T ss_dssp             HHHHHTSCCC
T ss_pred             HHHHHhcCCC
Confidence            9986 67765

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.70  E-value=1.3e-18  Score=126.05  Aligned_cols=84  Identities=24%  Similarity=0.354  Sum_probs=77.5

Q ss_pred             CCCcccccccccCCHHHHHHHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCCccccCCchHHHHHHhh
Q psy4576         310 KKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKT  389 (400)
Q Consensus       310 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~  389 (400)
                      ++|.|+.|++.|.....|..|+++|++++||.|++|++.|.....|..|+++|++ .+|.|+.|++.|.+...|..|++.
T Consensus         2 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~-~~~~c~~C~~~f~~~~~L~~H~~~   80 (88)
T 1llm_C            2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LPILEDKVEELLSKNYHLENEVAR   80 (88)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCC-CcchHHHHHHHHHHHhhhHHHHHH
Confidence            4678999999999999999999999999999999999999999999999999985 789999999999999999999999


Q ss_pred             hCCCC
Q psy4576         390 HHPGV  394 (400)
Q Consensus       390 hh~~~  394 (400)
                      +|+..
T Consensus        81 ~h~~~   85 (88)
T 1llm_C           81 LKKLV   85 (88)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            88643

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.68  E-value=2.7e-17  Score=108.24  Aligned_cols=58  Identities=26%  Similarity=0.666  Sum_probs=54.4

Q ss_pred             CCCCcccccccccCCHHHHHHHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCC
Q psy4576         309 GKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGET  366 (400)
Q Consensus       309 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~  366 (400)
                      +++|.|+.|++.|.....|..|+++|++++||.|++||++|...+.|..|+++|+|++
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            5678999999999999999999999999999999999999999999999999999875

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.68  E-value=3.3e-17  Score=117.72  Aligned_cols=78  Identities=29%  Similarity=0.496  Sum_probs=73.7

Q ss_pred             CCcc--cccccccCCHHHHHHHHHHhcCCCCeeccc--ccccccChhhHHHHHhhcCCCCcccCCC---CccccCCchHH
Q psy4576         311 KPVC--TICGKMLIDKRSLANHMNTHTGLKPHCCEI--CGRSYSTAAYLKVHMSCHTGETSHTCHL---CPQKFRQRSSY  383 (400)
Q Consensus       311 ~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~L~~H~~~h~~~~~~~C~~---C~~~f~~~~~l  383 (400)
                      +|.|  +.|++.|.....|..|+++|.+++||.|++  |++.|.....|..|+++|++   |.|+.   |++.|.+...|
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~~~~C~~~f~~~~~l   77 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGKTWTLY   77 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS---EECCSCSSCCCEESSHHHH
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC---CCCCCCCCCCCccCCHHHH
Confidence            3678  889999999999999999999999999988  99999999999999999998   99999   99999999999


Q ss_pred             HHHHhhhC
Q psy4576         384 TLHYKTHH  391 (400)
Q Consensus       384 ~~H~~~hh  391 (400)
                      ..|+++||
T Consensus        78 ~~H~~~hh   85 (85)
T 2j7j_A           78 LKHVAECH   85 (85)
T ss_dssp             HHHHHHCC
T ss_pred             HHHHHhcC
Confidence            99999987

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.67  E-value=4.3e-17  Score=123.38  Aligned_cols=87  Identities=29%  Similarity=0.537  Sum_probs=74.9

Q ss_pred             hhhcCCccccccccccccChhhHHHHHhhhcCCCCCcccccccccCCHHHHHHHHHHhcCCCCeecccccccccChhhHH
Q psy4576         277 TAILKREFICDVCGKSYVRKGALTEHHQREHQGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLK  356 (400)
Q Consensus       277 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~  356 (400)
                      .++++++|.| .|++.|.+...|..|+..++...+|.|+.|++.|.....|..|+++|+++++|.|++|++.|.....|.
T Consensus         4 ~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~   82 (110)
T 2csh_A            4 GSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFH   82 (110)
T ss_dssp             CCCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESCHHHHH
T ss_pred             CCCCCCCEec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcCHHHHH
Confidence            3456788888 888888888888888866556667799999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCC
Q psy4576         357 VHMSCHTG  364 (400)
Q Consensus       357 ~H~~~h~~  364 (400)
                      .|++.|+.
T Consensus        83 ~H~~~~~~   90 (110)
T 2csh_A           83 RHVTSCTK   90 (110)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHccc
Confidence            99988764

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.65  E-value=1.7e-17  Score=129.55  Aligned_cols=82  Identities=18%  Similarity=0.392  Sum_probs=70.3

Q ss_pred             CCcccccccccC------CHHHHHHHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCCccccCCchHHH
Q psy4576         311 KPVCTICGKMLI------DKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYT  384 (400)
Q Consensus       311 ~~~C~~C~~~f~------~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~  384 (400)
                      .+.|+.|.+.|.      ....|..|+ .|++++||.|++|++.|.....|..|+++|  ++||.|++|++.|.....|.
T Consensus        41 ~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H--~~~~~C~~C~k~f~~~~~l~  117 (129)
T 2wbt_A           41 RLIRAIVKTLIHNPQLLDESSYLYRLL-ASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSAL  117 (129)
T ss_dssp             HHHHHHHHHHHHCGGGTTTHHHHHHHH-HHHHHCSEECTTTCCEESSHHHHHHHHHHT--CCCCBCTTTCCBCSSHHHHH
T ss_pred             cccchhhhcccCCCcccCCHHHHHHHH-HhCCCCCeECCCCCcccCCHhHHHHHHHHC--CCCCCCCCCCcccCCHHHHH
Confidence            345666555544      566677777 688899999999999999999999999999  88999999999999999999


Q ss_pred             HHHhhhCCCCC
Q psy4576         385 LHYKTHHPGVI  395 (400)
Q Consensus       385 ~H~~~hh~~~~  395 (400)
                      .|+++||+...
T Consensus       118 ~H~~~h~~~~v  128 (129)
T 2wbt_A          118 DHVCKKHNICV  128 (129)
T ss_dssp             HHHHHTTCCCC
T ss_pred             HHHHHHCCccC
Confidence            99999998753

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.65  E-value=2.6e-17  Score=121.61  Aligned_cols=79  Identities=15%  Similarity=0.223  Sum_probs=71.4

Q ss_pred             ccCCHHHHHHHHHHhcCCCCeeccccccccc-ChhhHHHHHhhcCC-CCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         320 MLIDKRSLANHMNTHTGLKPHCCEICGRSYS-TAAYLKVHMSCHTG-ETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       320 ~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~-~~~~L~~H~~~h~~-~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      .+.....+..|+++|.++++|.|.+|++.|. ....|..|+++|++ +++|.|++|++.|.+...|..|+++||+++|+.
T Consensus         5 s~~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp~~   84 (98)
T 2gqj_A            5 SSGPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPSD   84 (98)
T ss_dssp             CCCCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCSCSSC
T ss_pred             CCCCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcCCCCCC
Confidence            3455566788999999999999999999999 99999999999998 999999999999999999999999999988865


Q ss_pred             C
Q psy4576         398 K  398 (400)
Q Consensus       398 ~  398 (400)
                      .
T Consensus        85 ~   85 (98)
T 2gqj_A           85 A   85 (98)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.64  E-value=2.8e-16  Score=113.89  Aligned_cols=83  Identities=31%  Similarity=0.630  Sum_probs=75.3

Q ss_pred             CCcccccc--ccccccChhhHHHHHhhhcCCCCCccc--ccccccCCHHHHHHHHHHhcCCCCeecccccccccChhhHH
Q psy4576         281 KREFICDV--CGKSYVRKGALTEHHQREHQGKKPVCT--ICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLK  356 (400)
Q Consensus       281 ~~~~~C~~--C~~~f~~~~~l~~H~~~~h~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~  356 (400)
                      ..+|.|+.  |++.|.+...|..|+..+++..+|.|+  .|++.|.....|..|+++|+++++|.|++|++.|...+.|.
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~   82 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLA   82 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHH
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccCCHHHHH
Confidence            46799999  999999999999998665556677997  59999999999999999999999999999999999999999


Q ss_pred             HHHhhcC
Q psy4576         357 VHMSCHT  363 (400)
Q Consensus       357 ~H~~~h~  363 (400)
                      .|+++|.
T Consensus        83 ~H~~~H~   89 (89)
T 2wbs_A           83 LHMKRHF   89 (89)
T ss_dssp             HHGGGGC
T ss_pred             HHHHhhC
Confidence            9999883

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.64  E-value=4e-16  Score=115.79  Aligned_cols=86  Identities=33%  Similarity=0.586  Sum_probs=77.0

Q ss_pred             hcCCcccccc--ccccccChhhHHHHHhhhcCCCCCccc--ccccccCCHHHHHHHHHHhcCCCCeecccccccccChhh
Q psy4576         279 ILKREFICDV--CGKSYVRKGALTEHHQREHQGKKPVCT--ICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAY  354 (400)
Q Consensus       279 ~~~~~~~C~~--C~~~f~~~~~l~~H~~~~h~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~  354 (400)
                      ...++|.|..  |++.|.....|..|++.++..++|.|+  .|++.|.....|..|+++|+++++|.|++|++.|.....
T Consensus        11 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~   90 (100)
T 2ebt_A           11 EKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDH   90 (100)
T ss_dssp             CSCCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCSSHHH
T ss_pred             ccCcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccCCHHH
Confidence            3456799996  999999999999998665566777996  599999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCC
Q psy4576         355 LKVHMSCHTG  364 (400)
Q Consensus       355 L~~H~~~h~~  364 (400)
                      |..|+++|++
T Consensus        91 l~~H~~~H~~  100 (100)
T 2ebt_A           91 LALHMKRHQN  100 (100)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHhCC
Confidence            9999999864

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.63  E-value=2.4e-16  Score=108.61  Aligned_cols=66  Identities=26%  Similarity=0.477  Sum_probs=62.3

Q ss_pred             HhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCCC
Q psy4576         333 THTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPPK  398 (400)
Q Consensus       333 ~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~~  398 (400)
                      .|.++++|.|.+|++.|.....|..|+++|+++++|+|++|++.|.....|..|+++||+++|.+.
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~p~   68 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPS   68 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSCCSS
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCCCCC
Confidence            367889999999999999999999999999999999999999999999999999999999998764

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.62  E-value=4.4e-16  Score=110.10  Aligned_cols=70  Identities=24%  Similarity=0.533  Sum_probs=61.9

Q ss_pred             CCCCcccc--cccccCCHHHHHHHHH-HhcCCCCeeccc--ccccccChhhHHHHHhhcCCCCcccCCCCccccC
Q psy4576         309 GKKPVCTI--CGKMLIDKRSLANHMN-THTGLKPHCCEI--CGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFR  378 (400)
Q Consensus       309 ~~~~~C~~--C~~~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~  378 (400)
                      .++|.|..  |++.|.+...|..|++ .|.++++|.|++  |++.|.....|..|+++|+++++|.|++|+++|.
T Consensus         5 ~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F~   79 (79)
T 2dlk_A            5 SSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSSG   79 (79)
T ss_dssp             CSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCCC
T ss_pred             CCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCCCC
Confidence            44567765  9999999999999998 699999999998  9999999999999999999999999999999884

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.61  E-value=1.1e-16  Score=112.70  Aligned_cols=71  Identities=25%  Similarity=0.490  Sum_probs=64.7

Q ss_pred             HHHHHHHhcCCCCeecccccccccChhhHHHHHh-hcCCC-CcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         327 LANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMS-CHTGE-TSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       327 l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~-~h~~~-~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      |..|+++|++++||.|++|++.|.....|..|++ .|.++ ++|+|++|++.|.+...|..|++++|+...|.
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~p~   75 (77)
T 2ct1_A            3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPS   75 (77)
T ss_dssp             CCCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCCSCCC
T ss_pred             CCccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCCCCCC
Confidence            4568889999999999999999999999999997 67764 89999999999999999999999999987664

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.60  E-value=1.1e-15  Score=111.88  Aligned_cols=76  Identities=18%  Similarity=0.259  Sum_probs=65.3

Q ss_pred             cccCCHHHHHHHHHHhcCCCCeecccccccc-cChhhHHHHHhhcCCCCcccCCCCccccCCchHHHHH-HhhhCCCCCC
Q psy4576         319 KMLIDKRSLANHMNTHTGLKPHCCEICGRSY-STAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLH-YKTHHPGVIP  396 (400)
Q Consensus       319 ~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f-~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H-~~~hh~~~~~  396 (400)
                      ..|.....|..|++.|.++++|.|+.|++.| .....|..|+++| ++++|.|.+|++.|.....|..| +++|. ++|+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~-~~p~   91 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHN-SLPS   91 (96)
T ss_dssp             CSSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHHHHTC-CCSS
T ss_pred             CCCCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHHhHHhcC-CCCC
Confidence            4567777888899989899999999999999 8999999999999 99999999999999999999999 66665 4443

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.59  E-value=1.4e-15  Score=105.96  Aligned_cols=64  Identities=25%  Similarity=0.468  Sum_probs=54.8

Q ss_pred             HhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCC
Q psy4576         333 THTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIP  396 (400)
Q Consensus       333 ~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~  396 (400)
                      .+.++++|+|.+|++.|.....|..|+++|+++++|+|++|++.|.....|..|+++|++++|+
T Consensus        11 ~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           11 MTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             CCCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             ccCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            4567788888888888888888888888888888888888888888888888888888888775

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.57  E-value=1.6e-15  Score=105.03  Aligned_cols=65  Identities=34%  Similarity=0.608  Sum_probs=59.9

Q ss_pred             HHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCC
Q psy4576         331 MNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVI  395 (400)
Q Consensus       331 ~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~  395 (400)
                      .++|++++||.|++|++.|.....|..|+++|+++++|+|++|++.|.....|..|+++|+++.+
T Consensus         6 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~   70 (72)
T 1x6e_A            6 SGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPS   70 (72)
T ss_dssp             CCTTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHSSSS
T ss_pred             CcccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCCCCC
Confidence            34688999999999999999999999999999999999999999999999999999999987654

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.57  E-value=2.6e-16  Score=113.78  Aligned_cols=81  Identities=20%  Similarity=0.341  Sum_probs=63.8

Q ss_pred             CccccccccccccChhhHHHHHhhhcCCCCCcccccccccCCHHHHHHHHHHhcCCCCeecccccccccChhhHHHHHhh
Q psy4576         282 REFICDVCGKSYVRKGALTEHHQREHQGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSC  361 (400)
Q Consensus       282 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~  361 (400)
                      ++|.|+.|++.|.+...|..|+..+++..+|.|+.|++.|.....|..|+++|++ .+|.|+.|++.|.....|..|++.
T Consensus         2 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~-~~~~c~~C~~~f~~~~~L~~H~~~   80 (88)
T 1llm_C            2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LPILEDKVEELLSKNYHLENEVAR   80 (88)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCC-CcchHHHHHHHHHHHhhhHHHHHH
Confidence            5678888888888888888887555555666888888888888888888888775 678888888888888888888866


Q ss_pred             cC
Q psy4576         362 HT  363 (400)
Q Consensus       362 h~  363 (400)
                      ++
T Consensus        81 ~h   82 (88)
T 1llm_C           81 LK   82 (88)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.57  E-value=3e-15  Score=105.13  Aligned_cols=61  Identities=31%  Similarity=0.506  Sum_probs=30.7

Q ss_pred             CCCCeecccccccccChhhHHHHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCC
Q psy4576         336 GLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIP  396 (400)
Q Consensus       336 ~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~  396 (400)
                      ++++|.|++|++.|.....|..|+++|+++++|.|++|++.|.....|..|+++|++++|+
T Consensus        15 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~   75 (77)
T 2cot_A           15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPS   75 (77)
T ss_dssp             CSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCC
T ss_pred             CCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCC
Confidence            3444555555555555555555555555555555555555555555555555555544443

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.57  E-value=9.3e-16  Score=110.34  Aligned_cols=79  Identities=15%  Similarity=0.264  Sum_probs=55.2

Q ss_pred             HHHHHhhhcCCCCCcccccccccCCHHHHHHHHHHhcCC----CCeecccccccccChhhHHHHHhhcCCCCcccCCCCc
Q psy4576         299 LTEHHQREHQGKKPVCTICGKMLIDKRSLANHMNTHTGL----KPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCP  374 (400)
Q Consensus       299 l~~H~~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~----~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~  374 (400)
                      |.+|++.+...++|.|+.|++.|.....|..|++.|++.    ++|.|.+|++.|.....|..|+++|++++++.|..|+
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~   82 (86)
T 1x6h_A            3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSG   82 (86)
T ss_dssp             TTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCCCCCCC
T ss_pred             cccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCCcccCCCC
Confidence            345653333344557777777777777777777766554    6777777777777777777777777777777777777


Q ss_pred             ccc
Q psy4576         375 QKF  377 (400)
Q Consensus       375 ~~f  377 (400)
                      .+|
T Consensus        83 ~~~   85 (86)
T 1x6h_A           83 PSS   85 (86)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            654

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.56  E-value=1.7e-15  Score=99.63  Aligned_cols=57  Identities=32%  Similarity=0.723  Sum_probs=48.5

Q ss_pred             CCCCeecccccccccChhhHHHHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCC
Q psy4576         336 GLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHP  392 (400)
Q Consensus       336 ~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~  392 (400)
                      |++||.|++|++.|.....|..|+++|++++||.|++|++.|.....|..|+++||+
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            457899999999999999999999999999999999999999999999999999884

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.56  E-value=3.8e-15  Score=104.62  Aligned_cols=64  Identities=31%  Similarity=0.598  Sum_probs=59.4

Q ss_pred             cCCCCCcccccccccCCHHHHHHHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccC
Q psy4576         307 HQGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC  370 (400)
Q Consensus       307 h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C  370 (400)
                      ...++|.|+.|++.|.....|..|+++|++++||.|++|++.|.....|..|+++|++++||+|
T Consensus        14 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           14 RERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             CCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            3456779999999999999999999999999999999999999999999999999999999988

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.56  E-value=3e-15  Score=106.08  Aligned_cols=62  Identities=23%  Similarity=0.526  Sum_probs=52.8

Q ss_pred             HhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCC
Q psy4576         333 THTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGV  394 (400)
Q Consensus       333 ~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~  394 (400)
                      .+.+.++|.|++|++.|.....|.+|+++|++++||.|++|+++|.+...|.+|++..|++.
T Consensus        22 ~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E   83 (85)
T 2lv2_A           22 LSASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSE   83 (85)
T ss_dssp             SCCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTC
T ss_pred             CCCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCcCC
Confidence            45566789999999999999999999999999999999999999999999999987767653

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.56  E-value=1.8e-15  Score=108.80  Aligned_cols=71  Identities=21%  Similarity=0.395  Sum_probs=49.6

Q ss_pred             HHHHHHHhcCCCCeecccccccccChhhHHHHHhhcCCC----CcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         327 LANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGE----TSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       327 l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~----~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      |.+|+++|++++||.|.+|++.|.....|..|++.|++.    ++|.|++|++.|.....|..|+++|+++.++.
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~   77 (86)
T 1x6h_A            3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVE   77 (86)
T ss_dssp             TTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCC
T ss_pred             cccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCCcc
Confidence            445667777777777777777777777777777665554    56777777777777777777777777766543

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.55  E-value=2e-15  Score=102.68  Aligned_cols=61  Identities=25%  Similarity=0.488  Sum_probs=56.9

Q ss_pred             HHhcCCCCeecccccccccChhhHHHHHhh-c-CCCCcccCCCCccccCCchHHHHHHhhhCC
Q psy4576         332 NTHTGLKPHCCEICGRSYSTAAYLKVHMSC-H-TGETSHTCHLCPQKFRQRSSYTLHYKTHHP  392 (400)
Q Consensus       332 ~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~-h-~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~  392 (400)
                      ++|++++||.|+.|++.|.....|..|++. | .++++|.|++|++.|.+.+.|..|++++|+
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             cccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            468899999999999999999999999998 7 588999999999999999999999999986

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.54  E-value=7.2e-15  Score=105.33  Aligned_cols=78  Identities=23%  Similarity=0.414  Sum_probs=66.0

Q ss_pred             cccc--ccccccccChhhHHHHHhhhcCCCCCcccc--cccccCCHHHHHHHHHHhcCCCCeeccc---ccccccChhhH
Q psy4576         283 EFIC--DVCGKSYVRKGALTEHHQREHQGKKPVCTI--CGKMLIDKRSLANHMNTHTGLKPHCCEI---CGRSYSTAAYL  355 (400)
Q Consensus       283 ~~~C--~~C~~~f~~~~~l~~H~~~~h~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~---C~~~f~~~~~L  355 (400)
                      ||.|  +.|++.|.+...|..|++.+++.++|.|+.  |++.|.....|..|+++|++   |.|+.   |++.|...+.|
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~~~~C~~~f~~~~~l   77 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGKTWTLY   77 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS---EECCSCSSCCCEESSHHHH
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC---CCCCCCCCCCCccCCHHHH
Confidence            4778  888888888888888885555566678988  99999999999999998887   99999   99999999999


Q ss_pred             HHHHhhcC
Q psy4576         356 KVHMSCHT  363 (400)
Q Consensus       356 ~~H~~~h~  363 (400)
                      ..|+++|+
T Consensus        78 ~~H~~~hh   85 (85)
T 2j7j_A           78 LKHVAECH   85 (85)
T ss_dssp             HHHHHHCC
T ss_pred             HHHHHhcC
Confidence            99988874

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.52  E-value=5.5e-15  Score=104.11  Aligned_cols=64  Identities=27%  Similarity=0.521  Sum_probs=57.9

Q ss_pred             HhcCCCCeecccccccccChhhHHHHHhhcCC---CCcccCCCCccccCCchHHHHHHhhhCCCCCC
Q psy4576         333 THTGLKPHCCEICGRSYSTAAYLKVHMSCHTG---ETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIP  396 (400)
Q Consensus       333 ~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~---~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~  396 (400)
                      .|++++||.|.+|++.|.....|..|+++|++   +++|.|++|++.|.....|..|++.+|++..+
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~   67 (78)
T 2d9h_A            1 GSSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL   67 (78)
T ss_dssp             CCCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSS
T ss_pred             CCCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            37889999999999999999999999999986   89999999999999999999999888876544

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.52  E-value=1.7e-15  Score=118.04  Aligned_cols=115  Identities=13%  Similarity=0.139  Sum_probs=85.1

Q ss_pred             HcCCCCceecccccccccChhHHhhhHhhhcchhhHHHHhhhcCCcccccccccccc------ChhhHHHHHhhhcCCCC
Q psy4576         238 VHKIGKNYQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFICDVCGKSYV------RKGALTEHHQREHQGKK  311 (400)
Q Consensus       238 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~~~~C~~C~~~f~------~~~~l~~H~~~~h~~~~  311 (400)
                      .+.+.++|.|...+.....  .+..+.+..        .....++.+.|+.|++.|.      ....|..|+ .+++.++
T Consensus         6 ~~~~~k~~~~~~k~~~~~~--s~ee~~~~~--------~l~~~~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~~~~~   74 (129)
T 2wbt_A            6 VDSGSKKYLSNHKGIFIHV--TLEELKRYH--------QLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLL-ASKAISQ   74 (129)
T ss_dssp             CCTTCCGGGGCSSCEEEEC--CHHHHHHHT--------TSCHHHHHHHHHHHHHHHHCGGGTTTHHHHHHHH-HHHHHCS
T ss_pred             hcccccccccccCCeeeee--cHHhhhccc--------cCChhhCcccchhhhcccCCCcccCCHHHHHHHH-HhCCCCC
Confidence            4567788888776544322  122221111        1112234577888776665      556677776 7777788


Q ss_pred             CcccccccccCCHHHHHHHHHHhcCCCCeecccccccccChhhHHHHHhhcCCC
Q psy4576         312 PVCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGE  365 (400)
Q Consensus       312 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~  365 (400)
                      |.|+.|++.|.....|..|+++|  ++||.|++|++.|...+.|..|+++|++.
T Consensus        75 ~~C~~C~k~f~~~~~l~~H~~~H--~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           75 FVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             EECTTTCCEESSHHHHHHHHHHT--CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             eECCCCCcccCCHhHHHHHHHHC--CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            89999999999999999999999  79999999999999999999999999876

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.52  E-value=9.5e-15  Score=96.03  Aligned_cols=56  Identities=27%  Similarity=0.504  Sum_probs=46.4

Q ss_pred             CeecccccccccChhhHHHHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCC
Q psy4576         339 PHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGV  394 (400)
Q Consensus       339 ~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~  394 (400)
                      ||.|++|++.|.....|..|+++|+++++|.|++|++.|.+...|..|+++|++++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            57888888888888888888888888888888888888888888888888887765

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.52  E-value=6.9e-15  Score=108.12  Aligned_cols=67  Identities=18%  Similarity=0.246  Sum_probs=50.7

Q ss_pred             CCCCcccccccccCCHHHHHHHHH-Hh---cCCCCeecccccccccChhhHHHH-HhhcCCCCcccCCCCcc
Q psy4576         309 GKKPVCTICGKMLIDKRSLANHMN-TH---TGLKPHCCEICGRSYSTAAYLKVH-MSCHTGETSHTCHLCPQ  375 (400)
Q Consensus       309 ~~~~~C~~C~~~f~~~~~l~~H~~-~h---~~~~~~~C~~C~~~f~~~~~L~~H-~~~h~~~~~~~C~~C~~  375 (400)
                      +++|.|+.|++.|.....|..|++ .|   .+++||.|++||++|...+.|..| +++|++++||.|.++..
T Consensus        16 ekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~~~   87 (102)
T 2ghf_A           16 EGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVKR   87 (102)
T ss_dssp             CSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEECCC
T ss_pred             CcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCcccC
Confidence            344577777777777777777776 47   457788888888888888888888 78888888888877543

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.51  E-value=2.3e-14  Score=99.71  Aligned_cols=61  Identities=38%  Similarity=0.631  Sum_probs=54.2

Q ss_pred             CCCCCcccccccccCCHHHHHHHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcc
Q psy4576         308 QGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSH  368 (400)
Q Consensus       308 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~  368 (400)
                      ..++|.|+.|++.|.....|..|+++|+++++|+|.+|++.|.....|..|+++|++++||
T Consensus        14 ~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           14 SDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             CCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             CCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            3456689999999999999999999999999999999999999999999999999999876

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.50  E-value=1.8e-14  Score=101.64  Aligned_cols=72  Identities=29%  Similarity=0.541  Sum_probs=62.5

Q ss_pred             hcCCcccccc--ccccccChhhHHHHHhhhcC-CCCCcccc--cccccCCHHHHHHHHHHhcCCCCeeccccccccc
Q psy4576         279 ILKREFICDV--CGKSYVRKGALTEHHQREHQ-GKKPVCTI--CGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYS  350 (400)
Q Consensus       279 ~~~~~~~C~~--C~~~f~~~~~l~~H~~~~h~-~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~  350 (400)
                      +++++|.|..  |++.|.+...|..|++..|. .++|.|+.  |++.|.....|..|+++|++++||.|++|+++|.
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F~   79 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSSG   79 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCCC
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCCCC
Confidence            3567888887  99999999999999863554 55669998  9999999999999999999999999999999984

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.50  E-value=3e-14  Score=104.23  Aligned_cols=80  Identities=19%  Similarity=0.261  Sum_probs=69.0

Q ss_pred             cccccChhhHHHHHhhhcCCCCCccccccccc-CCHHHHHHHHHHhcCCCCeecccccccccChhhHHHH-HhhcCCCCc
Q psy4576         290 GKSYVRKGALTEHHQREHQGKKPVCTICGKML-IDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVH-MSCHTGETS  367 (400)
Q Consensus       290 ~~~f~~~~~l~~H~~~~h~~~~~~C~~C~~~f-~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H-~~~h~~~~~  367 (400)
                      ...|.....|..|...+...++|.|+.|++.| .....|..|+++| +++||.|.+|++.|.....|..| +++|+++..
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~~~p~   91 (96)
T 2ctd_A           13 PPVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPS   91 (96)
T ss_dssp             CCSSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHHHHTCCCSS
T ss_pred             CCCCCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHHhHHhcCCCCC
Confidence            34667778888888666777778999999999 9999999999999 99999999999999999999999 888987655


Q ss_pred             ccC
Q psy4576         368 HTC  370 (400)
Q Consensus       368 ~~C  370 (400)
                      |.+
T Consensus        92 ~~~   94 (96)
T 2ctd_A           92 GPS   94 (96)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            544

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.47  E-value=4.8e-14  Score=93.67  Aligned_cols=56  Identities=32%  Similarity=0.675  Sum_probs=47.1

Q ss_pred             CCeecccccccccChhhHHHHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCC
Q psy4576         338 KPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPG  393 (400)
Q Consensus       338 ~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~  393 (400)
                      +||.|++|++.|.....|..|+++|+++++|.|++|++.|.+...|..|++..|.+
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~   56 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG   56 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcCC
Confidence            47888889988888888989988888888899999999998888899997554543

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=1.3e-14  Score=106.96  Aligned_cols=80  Identities=18%  Similarity=0.301  Sum_probs=67.3

Q ss_pred             cccChhhHHHHHhhhcCCCCCcccccccccC-CHHHHHHHHHHhcC-CCCeecccccccccChhhHHHHHhhcCCCCccc
Q psy4576         292 SYVRKGALTEHHQREHQGKKPVCTICGKMLI-DKRSLANHMNTHTG-LKPHCCEICGRSYSTAAYLKVHMSCHTGETSHT  369 (400)
Q Consensus       292 ~f~~~~~l~~H~~~~h~~~~~~C~~C~~~f~-~~~~l~~H~~~h~~-~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~  369 (400)
                      .+.....+..|++.+...++|.|+.|++.|. ....|..|+++|++ +++|.|.+|++.|.....|..|+++|++++|+.
T Consensus         5 s~~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp~~   84 (98)
T 2gqj_A            5 SSGPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPSD   84 (98)
T ss_dssp             CCCCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCSCSSC
T ss_pred             CCCCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcCCCCCC
Confidence            3455566778874444556779999999999 99999999999998 899999999999999999999999999998865


Q ss_pred             CC
Q psy4576         370 CH  371 (400)
Q Consensus       370 C~  371 (400)
                      -.
T Consensus        85 ~~   86 (98)
T 2gqj_A           85 AE   86 (98)
T ss_dssp             CC
T ss_pred             CC
Confidence            44

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.46  E-value=4.2e-14  Score=103.92  Aligned_cols=63  Identities=16%  Similarity=0.153  Sum_probs=58.2

Q ss_pred             hcCCCCeecccccccccChhhHHHHHh-hc---CCCCcccCCCCccccCCchHHHHH-HhhhCCCCCC
Q psy4576         334 HTGLKPHCCEICGRSYSTAAYLKVHMS-CH---TGETSHTCHLCPQKFRQRSSYTLH-YKTHHPGVIP  396 (400)
Q Consensus       334 h~~~~~~~C~~C~~~f~~~~~L~~H~~-~h---~~~~~~~C~~C~~~f~~~~~l~~H-~~~hh~~~~~  396 (400)
                      -+|++||.|+.|++.|...+.|..|++ .|   .+++||.|++||++|...+.|..| +++|.+++|+
T Consensus        13 ~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy   80 (102)
T 2ghf_A           13 KKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENF   80 (102)
T ss_dssp             CCCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCE
T ss_pred             CCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCe
Confidence            357899999999999999999999998 58   568999999999999999999999 8999998876

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.43  E-value=1.7e-13  Score=89.88  Aligned_cols=56  Identities=30%  Similarity=0.571  Sum_probs=52.6

Q ss_pred             CCcccccccccCCHHHHHHHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCC
Q psy4576         311 KPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGET  366 (400)
Q Consensus       311 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~  366 (400)
                      +|.|+.|++.|.....|..|+++|++++||.|++|++.|...+.|..|+++|++++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            46899999999999999999999999999999999999999999999999998875

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.43  E-value=1.3e-13  Score=97.66  Aligned_cols=58  Identities=21%  Similarity=0.547  Sum_probs=52.7

Q ss_pred             CCCCcccccccccCCHHHHHHHHHHhcCCCCeecccccccccChhhHHHHH-hhcCCCC
Q psy4576         309 GKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHM-SCHTGET  366 (400)
Q Consensus       309 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~-~~h~~~~  366 (400)
                      .+.+.|++|++.|.....|..|+++|++++||.|++|+++|.....|.+|+ +.|.++.
T Consensus        26 ~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           26 AECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             CTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTCC
T ss_pred             CCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCcCCC
Confidence            455689999999999999999999999999999999999999999999997 5687764

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.42  E-value=1.5e-13  Score=90.13  Aligned_cols=56  Identities=32%  Similarity=0.602  Sum_probs=49.3

Q ss_pred             CCCCcccccccccCCHHHHHHHHHHhcCCCCeecccccccccChhhHHHHHhhcCC
Q psy4576         309 GKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTG  364 (400)
Q Consensus       309 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~  364 (400)
                      +++|.|+.|++.|.+...|..|+++|++++||.|++|++.|.....|..|+++|++
T Consensus         2 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            2 SSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             ---CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            45679999999999999999999999999999999999999999999999998874

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.41  E-value=1.4e-13  Score=94.51  Aligned_cols=60  Identities=25%  Similarity=0.414  Sum_probs=52.3

Q ss_pred             CCCCcccccccccCCHHHHHHHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcc
Q psy4576         309 GKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSH  368 (400)
Q Consensus       309 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~  368 (400)
                      .++|.|+.|++.|.....|..|+++|+++++|.|++|++.|.....|..|+++|++++|.
T Consensus         7 ~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~   66 (70)
T 1x5w_A            7 GHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSG   66 (70)
T ss_dssp             CCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSCC
T ss_pred             CCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCCC
Confidence            455688888888988889999998898999999999999999999999999999888764

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.40  E-value=1.8e-13  Score=94.91  Aligned_cols=59  Identities=29%  Similarity=0.664  Sum_probs=50.3

Q ss_pred             HhcCCCCeecc--cccccccChhhHHHHHhhcCCCCcccCCCCccccCCchHHHHHHhhhC
Q psy4576         333 THTGLKPHCCE--ICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHH  391 (400)
Q Consensus       333 ~h~~~~~~~C~--~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh  391 (400)
                      .|.++++|.|+  .|++.|.....|..|+++|.++++|.|++|++.|.....|..|+++|.
T Consensus        13 ~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           13 VVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             CCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             cCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            36778888997  599999888889999888888888999999999999999999988763

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.39  E-value=3.2e-13  Score=93.29  Aligned_cols=59  Identities=34%  Similarity=0.529  Sum_probs=51.7

Q ss_pred             CCCCCcccccccccCCHHHHHHHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCC
Q psy4576         308 QGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGET  366 (400)
Q Consensus       308 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~  366 (400)
                      ..++|.|+.|++.|.....|..|+++|.+++||+|++|++.|.....|..|+++|+++.
T Consensus        11 ~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~   69 (72)
T 1x6e_A           11 GEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGP   69 (72)
T ss_dssp             TCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHSSS
T ss_pred             CCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCCCC
Confidence            34556899999999999999999999999999999999999999999999999998764

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.35  E-value=4.4e-13  Score=90.80  Aligned_cols=59  Identities=15%  Similarity=0.295  Sum_probs=52.8

Q ss_pred             cCCCCeecccccccccChhhHHHHHhhcCCCCcccCC-CCccccCCchHHHHHHhhhCCCCC
Q psy4576         335 TGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCH-LCPQKFRQRSSYTLHYKTHHPGVI  395 (400)
Q Consensus       335 ~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~-~C~~~f~~~~~l~~H~~~hh~~~~  395 (400)
                      -+++||.|..|++.|. .+.|..|+++ ++++||.|+ .|++.|..++.|..|+++|-+..|
T Consensus         6 C~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A            6 SGKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             CCCCEEECSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred             CCCCCeeccccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhhcccCc
Confidence            4578999999999999 9999999998 899999999 999999999999999998877665

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.34  E-value=1e-12  Score=96.11  Aligned_cols=61  Identities=25%  Similarity=0.378  Sum_probs=52.7

Q ss_pred             CCcccccccccCCHHHHHHHHHH-hcCCCC--------eecccccccccChhhHHHHHhhcCCCCcccCC
Q psy4576         311 KPVCTICGKMLIDKRSLANHMNT-HTGLKP--------HCCEICGRSYSTAAYLKVHMSCHTGETSHTCH  371 (400)
Q Consensus       311 ~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~--------~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~  371 (400)
                      .+.|+.|++.|.....|..|+++ |.++++        |.|++|++.|.....|..|+++|++++||.|+
T Consensus        25 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           25 SRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             SSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSC
T ss_pred             CCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            45788888888888888888887 877777        88999999999999999999999999999886

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.34  E-value=1.3e-12  Score=86.61  Aligned_cols=55  Identities=29%  Similarity=0.656  Sum_probs=50.6

Q ss_pred             CCcccccccccCCHHHHHHHHHHhcCCCCeecccccccccChhhHHHHH-hhcCCC
Q psy4576         311 KPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHM-SCHTGE  365 (400)
Q Consensus       311 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~-~~h~~~  365 (400)
                      +|.|+.|++.|.....|..|+++|++++||.|++|++.|...+.|..|+ ++|.++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             cCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcCCc
Confidence            5789999999999999999999999999999999999999999999997 677765

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=6.5e-15  Score=102.25  Aligned_cols=69  Identities=17%  Similarity=0.339  Sum_probs=48.5

Q ss_pred             hHHHHHhhhcCCCCCcccccccccCCHHHHHHHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCC
Q psy4576         298 ALTEHHQREHQGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC  373 (400)
Q Consensus       298 ~l~~H~~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C  373 (400)
                      .|..|++.+.+.++|.|+.|++.|.....|..       +++|.|++|++.|...+.|..|+++|+++++|.|++|
T Consensus         5 ~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~-------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A            5 SSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR-------RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             SCCCCCCCCCCCSEEECSSSCCEEECCCCCCC-------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSSCCCC
T ss_pred             hHHHHHHHhCCCCCeeCCcccchhCCHHHhCc-------CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCCCCCC
Confidence            34455433333344466666666666665554       5788888888888888888888888888888888877

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.31  E-value=1.1e-12  Score=88.75  Aligned_cols=56  Identities=16%  Similarity=0.409  Sum_probs=45.9

Q ss_pred             CCCCcccccccccCCHHHHHHHHHH-h-cCCCCeecccccccccChhhHHHHHhhcCC
Q psy4576         309 GKKPVCTICGKMLIDKRSLANHMNT-H-TGLKPHCCEICGRSYSTAAYLKVHMSCHTG  364 (400)
Q Consensus       309 ~~~~~C~~C~~~f~~~~~l~~H~~~-h-~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~  364 (400)
                      .++|.|+.|++.|.....|..|++. | .+++||.|++|++.|...+.|..|+++|++
T Consensus         8 ~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            8 EHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             TTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             CcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            3445888888888888888888887 6 578889999999999999999999888775

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=7e-13  Score=82.67  Aligned_cols=44  Identities=27%  Similarity=0.433  Sum_probs=41.5

Q ss_pred             HHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCC
Q psy4576         330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC  373 (400)
Q Consensus       330 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C  373 (400)
                      |+++|++++||.|++|++.|...+.|..|+++|++++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             cccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            67789999999999999999999999999999999999999987

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=8e-13  Score=82.41  Aligned_cols=45  Identities=29%  Similarity=0.515  Sum_probs=41.9

Q ss_pred             HHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCC
Q psy4576         329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC  373 (400)
Q Consensus       329 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C  373 (400)
                      .|+++|++++||.|++|++.|...+.|..|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            367789999999999999999999999999999999999999988

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=7.9e-13  Score=82.44  Aligned_cols=45  Identities=29%  Similarity=0.456  Sum_probs=41.7

Q ss_pred             HHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCC
Q psy4576         329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC  373 (400)
Q Consensus       329 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C  373 (400)
                      .|+++|++++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            367789999999999999999999999999999999999999988

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.28  E-value=7.7e-13  Score=82.49  Aligned_cols=45  Identities=29%  Similarity=0.459  Sum_probs=42.1

Q ss_pred             HHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCC
Q psy4576         329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC  373 (400)
Q Consensus       329 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C  373 (400)
                      +|+++|++++||.|++|++.|...+.|..|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            467789999999999999999999999999999999999999988

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=8e-13  Score=82.40  Aligned_cols=45  Identities=27%  Similarity=0.409  Sum_probs=41.9

Q ss_pred             HHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCC
Q psy4576         329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC  373 (400)
Q Consensus       329 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C  373 (400)
                      .|+++|++++||.|++|++.|...+.|..|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            367789999999999999999999999999999999999999988

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=6.4e-13  Score=81.96  Aligned_cols=44  Identities=27%  Similarity=0.489  Sum_probs=40.6

Q ss_pred             HHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCC
Q psy4576         330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC  373 (400)
Q Consensus       330 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C  373 (400)
                      |+++|++++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            56778999999999999999999999999999999999999987

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=7.6e-13  Score=82.49  Aligned_cols=45  Identities=31%  Similarity=0.514  Sum_probs=41.9

Q ss_pred             HHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCC
Q psy4576         329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC  373 (400)
Q Consensus       329 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C  373 (400)
                      .|+++|++++||.|++|++.|...+.|..|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             CcccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            367789999999999999999999999999999999999999988

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=8.2e-13  Score=82.36  Aligned_cols=45  Identities=33%  Similarity=0.519  Sum_probs=41.8

Q ss_pred             HHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCC
Q psy4576         329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC  373 (400)
Q Consensus       329 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C  373 (400)
                      .|+++|++++||.|++|++.|...+.|..|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CCcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            367789999999999999999999999999999999999999988

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.28  E-value=8.6e-13  Score=82.25  Aligned_cols=45  Identities=29%  Similarity=0.406  Sum_probs=41.9

Q ss_pred             HHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCC
Q psy4576         329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC  373 (400)
Q Consensus       329 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C  373 (400)
                      .|+++|++++||.|++|++.|...+.|..|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CCccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            367789999999999999999999999999999999999999987

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=8.4e-13  Score=82.31  Aligned_cols=45  Identities=29%  Similarity=0.420  Sum_probs=41.9

Q ss_pred             HHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCC
Q psy4576         329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC  373 (400)
Q Consensus       329 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C  373 (400)
                      .|+++|++++||.|++|++.|...+.|..|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            367789999999999999999999999999999999999999988

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.28  E-value=8.5e-13  Score=82.29  Aligned_cols=45  Identities=24%  Similarity=0.383  Sum_probs=41.8

Q ss_pred             HHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCC
Q psy4576         329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC  373 (400)
Q Consensus       329 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C  373 (400)
                      .|+++|++++||.|++|++.|...+.|..|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CCcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            367789999999999999999999999999999999999999988

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.1e-12  Score=81.84  Aligned_cols=45  Identities=24%  Similarity=0.393  Sum_probs=41.7

Q ss_pred             HHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCC
Q psy4576         329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC  373 (400)
Q Consensus       329 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C  373 (400)
                      .|+++|++++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            477889999999999999999999999999999999999999987

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.27  E-value=3.1e-12  Score=89.52  Aligned_cols=65  Identities=25%  Similarity=0.470  Sum_probs=33.2

Q ss_pred             HhHhhcCCCCCcccCCCCCCccCCHHHHHHHHHhhcCCCCCCcccCcCccccCCHHHHHHHHHHcC
Q psy4576         175 EHIISSHMHEKLYQCDFCGSQQRTKCRFYYHLRDKHLSKPANLSCEFCSRIFTKKELLRSHLAVHK  240 (400)
Q Consensus       175 ~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~  240 (400)
                      .|+ ..|.++++|.|++|++.|.+...|..|++..|......|.|+.|++.|.....|..|++.++
T Consensus         5 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H   69 (77)
T 2ct1_A            5 SSG-RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH   69 (77)
T ss_dssp             CCC-CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTS
T ss_pred             ccc-cccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhC
Confidence            344 45555555555555555555555555555333322223455555555555555555555433

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=8.2e-13  Score=82.34  Aligned_cols=45  Identities=31%  Similarity=0.414  Sum_probs=41.1

Q ss_pred             HHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCC
Q psy4576         329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC  373 (400)
Q Consensus       329 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C  373 (400)
                      .|+++|++++||.|++|++.|...+.|..|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            367789999999999999999999999999999999999999987

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=9.4e-13  Score=82.09  Aligned_cols=44  Identities=32%  Similarity=0.429  Sum_probs=41.3

Q ss_pred             HHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCC
Q psy4576         330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC  373 (400)
Q Consensus       330 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C  373 (400)
                      |+++|++++||.|++|++.|.....|..|+++|++++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            67789999999999999999999999999999999999999987

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=9.7e-13  Score=82.02  Aligned_cols=44  Identities=32%  Similarity=0.437  Sum_probs=41.5

Q ss_pred             HHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCC
Q psy4576         330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC  373 (400)
Q Consensus       330 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C  373 (400)
                      |+++|++++||.|++|++.|...+.|..|+++|++++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            67789999999999999999999999999999999999999988

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.27  E-value=8.1e-13  Score=82.38  Aligned_cols=45  Identities=31%  Similarity=0.475  Sum_probs=41.0

Q ss_pred             HHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCC
Q psy4576         329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC  373 (400)
Q Consensus       329 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C  373 (400)
                      +|+++|++++||.|++|++.|...+.|..|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            367788999999999999999999999999999999999999987

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.1e-12  Score=81.68  Aligned_cols=45  Identities=29%  Similarity=0.497  Sum_probs=42.0

Q ss_pred             HHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCC
Q psy4576         329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC  373 (400)
Q Consensus       329 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C  373 (400)
                      .|+++|++++||.|++|++.|...+.|..|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            477889999999999999999999999999999999999999988

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.27  E-value=7.8e-13  Score=82.45  Aligned_cols=44  Identities=34%  Similarity=0.508  Sum_probs=40.9

Q ss_pred             HHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCC
Q psy4576         330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC  373 (400)
Q Consensus       330 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C  373 (400)
                      |+++|++++||.|++|++.|...+.|..|+++|++++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            67789999999999999999999999999999999999999987

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.27  E-value=2.3e-12  Score=89.19  Aligned_cols=65  Identities=28%  Similarity=0.540  Sum_probs=54.5

Q ss_pred             HHHHHhhhcCCCC-Cccc--ccccccCCHHHHHHHHHHhcCCCCeecccccccccChhhHHHHHhhcC
Q psy4576         299 LTEHHQREHQGKK-PVCT--ICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHT  363 (400)
Q Consensus       299 l~~H~~~~h~~~~-~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~  363 (400)
                      |..|....+.+.+ |.|+  .|++.|.....|..|+++|.++++|.|++|++.|...+.|..|+++|+
T Consensus         6 ~~~~~~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G            6 MNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             --CTTSCCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             ccchhhccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            4445555555544 5997  599999999999999999999999999999999999999999999884

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1e-12  Score=81.90  Aligned_cols=45  Identities=36%  Similarity=0.572  Sum_probs=41.8

Q ss_pred             HHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCC
Q psy4576         329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC  373 (400)
Q Consensus       329 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C  373 (400)
                      .|+++|++++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            467789999999999999999999999999999999999999987

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.2e-12  Score=81.57  Aligned_cols=45  Identities=29%  Similarity=0.512  Sum_probs=42.4

Q ss_pred             HHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCC
Q psy4576         329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC  373 (400)
Q Consensus       329 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C  373 (400)
                      .|+++|++++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            477889999999999999999999999999999999999999988

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1e-12  Score=81.93  Aligned_cols=44  Identities=27%  Similarity=0.423  Sum_probs=41.3

Q ss_pred             HHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCC
Q psy4576         330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC  373 (400)
Q Consensus       330 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C  373 (400)
                      |+++|++++||.|++|++.|...+.|..|+++|++++||+|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            67789999999999999999999999999999999999999988

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=9.1e-13  Score=82.13  Aligned_cols=45  Identities=27%  Similarity=0.443  Sum_probs=42.0

Q ss_pred             HHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCC
Q psy4576         329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC  373 (400)
Q Consensus       329 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C  373 (400)
                      +|+++|++++||.|++|++.|...+.|..|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CCcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            367789999999999999999999999999999999999999988

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=8.5e-13  Score=82.29  Aligned_cols=45  Identities=27%  Similarity=0.411  Sum_probs=41.5

Q ss_pred             HHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCC
Q psy4576         329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC  373 (400)
Q Consensus       329 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C  373 (400)
                      +|+++|++++||.|++|++.|...+.|..|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            367789999999999999999999999999999999999999987

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=8.5e-13  Score=82.29  Aligned_cols=45  Identities=27%  Similarity=0.446  Sum_probs=41.5

Q ss_pred             HHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCC
Q psy4576         329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC  373 (400)
Q Consensus       329 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C  373 (400)
                      .|+++|++++||.|++|++.|...+.|..|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            367789999999999999999999999999999999999999987

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.27  E-value=1.1e-12  Score=81.70  Aligned_cols=45  Identities=31%  Similarity=0.469  Sum_probs=42.0

Q ss_pred             HHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCC
Q psy4576         329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC  373 (400)
Q Consensus       329 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C  373 (400)
                      .|+++|++++||.|++|++.|...+.|..|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             CSCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            367789999999999999999999999999999999999999988

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=7.7e-13  Score=82.47  Aligned_cols=45  Identities=31%  Similarity=0.521  Sum_probs=41.5

Q ss_pred             HHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCC
Q psy4576         329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC  373 (400)
Q Consensus       329 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C  373 (400)
                      .|+++|++++||.|++|++.|...+.|..|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            367789999999999999999999999999999999999999987

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=9.9e-13  Score=81.96  Aligned_cols=45  Identities=24%  Similarity=0.389  Sum_probs=41.6

Q ss_pred             HHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCC
Q psy4576         329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC  373 (400)
Q Consensus       329 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C  373 (400)
                      .|+++|++++||.|++|++.|...+.|..|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CCccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            367789999999999999999999999999999999999999988

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.1e-12  Score=81.75  Aligned_cols=44  Identities=32%  Similarity=0.611  Sum_probs=41.1

Q ss_pred             HHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCC
Q psy4576         330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC  373 (400)
Q Consensus       330 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C  373 (400)
                      |+++|++++||.|++|++.|...+.|..|+++|++++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            67789999999999999999999999999999999999999988

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=9.8e-13  Score=81.99  Aligned_cols=45  Identities=31%  Similarity=0.496  Sum_probs=40.9

Q ss_pred             HHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCC
Q psy4576         329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC  373 (400)
Q Consensus       329 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C  373 (400)
                      .|+++|++++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            367788999999999999999999999999999999999999987

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1e-12  Score=81.90  Aligned_cols=45  Identities=38%  Similarity=0.553  Sum_probs=41.5

Q ss_pred             HHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCC
Q psy4576         329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC  373 (400)
Q Consensus       329 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C  373 (400)
                      +|+++|++++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CCccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            367789999999999999999999999999999999999999987

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1e-12  Score=81.86  Aligned_cols=45  Identities=33%  Similarity=0.587  Sum_probs=40.9

Q ss_pred             HHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCC
Q psy4576         329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC  373 (400)
Q Consensus       329 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C  373 (400)
                      +|+++|++++||.|++|++.|...+.|..|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            367788999999999999999999999999999999999999987

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=8.4e-13  Score=82.30  Aligned_cols=45  Identities=27%  Similarity=0.507  Sum_probs=41.5

Q ss_pred             HHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCC
Q psy4576         329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC  373 (400)
Q Consensus       329 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C  373 (400)
                      .|+++|++++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            367789999999999999999999999999999999999999987

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=8.4e-13  Score=82.31  Aligned_cols=45  Identities=22%  Similarity=0.380  Sum_probs=41.5

Q ss_pred             HHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCC
Q psy4576         329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC  373 (400)
Q Consensus       329 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C  373 (400)
                      .|+++|++++||.|++|+++|...+.|..|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            467789999999999999999999999999999999999999987

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.1e-12  Score=81.83  Aligned_cols=45  Identities=31%  Similarity=0.479  Sum_probs=41.5

Q ss_pred             HHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCC
Q psy4576         329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC  373 (400)
Q Consensus       329 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C  373 (400)
                      .|+++|++++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            367789999999999999999999999999999999999999988

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1e-12  Score=81.90  Aligned_cols=44  Identities=34%  Similarity=0.539  Sum_probs=41.6

Q ss_pred             HHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCC
Q psy4576         330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC  373 (400)
Q Consensus       330 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C  373 (400)
                      |+++|++++||.|++|++.|...+.|..|+++|++++||+|++|
T Consensus         3 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            67789999999999999999999999999999999999999988

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=1.2e-12  Score=81.61  Aligned_cols=45  Identities=24%  Similarity=0.511  Sum_probs=41.8

Q ss_pred             HHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCC
Q psy4576         329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC  373 (400)
Q Consensus       329 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C  373 (400)
                      .|+++|++++||.|++|++.|...+.|..|+++|++++||+|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             CccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            367789999999999999999999999999999999999999988

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.1e-12  Score=81.73  Aligned_cols=45  Identities=22%  Similarity=0.374  Sum_probs=41.5

Q ss_pred             HHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCC
Q psy4576         329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC  373 (400)
Q Consensus       329 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C  373 (400)
                      .|+++|++++||.|++|++.|...+.|..|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            367789999999999999999999999999999999999999987

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=9.2e-13  Score=82.12  Aligned_cols=45  Identities=33%  Similarity=0.499  Sum_probs=42.2

Q ss_pred             HHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCC
Q psy4576         329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC  373 (400)
Q Consensus       329 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C  373 (400)
                      .|+++|++++||.|++|++.|...+.|..|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            367789999999999999999999999999999999999999988

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=1.4e-12  Score=81.35  Aligned_cols=44  Identities=27%  Similarity=0.446  Sum_probs=41.2

Q ss_pred             HHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCC
Q psy4576         330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC  373 (400)
Q Consensus       330 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C  373 (400)
                      |+++|++++||.|++|++.|...+.|..|+++|++++||+|++|
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            66789999999999999999999999999999999999999988

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=8.3e-13  Score=82.33  Aligned_cols=45  Identities=27%  Similarity=0.422  Sum_probs=41.6

Q ss_pred             HHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCC
Q psy4576         329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC  373 (400)
Q Consensus       329 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C  373 (400)
                      .|+++|++++||.|++|++.|...+.|..|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             CcCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            367789999999999999999999999999999999999999988

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1e-12  Score=81.86  Aligned_cols=44  Identities=25%  Similarity=0.389  Sum_probs=40.2

Q ss_pred             HHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCC
Q psy4576         330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC  373 (400)
Q Consensus       330 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C  373 (400)
                      |+++|++++||.|++|++.|...+.|..|+++|++++||+|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             SCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            66788899999999999999999999999999999999999987

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.2e-12  Score=81.51  Aligned_cols=45  Identities=29%  Similarity=0.507  Sum_probs=41.5

Q ss_pred             HHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCC
Q psy4576         329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC  373 (400)
Q Consensus       329 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C  373 (400)
                      .|+++|++++||.|++|++.|...+.|..|+++|++++||+|++|
T Consensus         2 ~h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            367789999999999999999999999999999999999999988

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=1.5e-12  Score=81.19  Aligned_cols=44  Identities=20%  Similarity=0.266  Sum_probs=40.9

Q ss_pred             HHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCC
Q psy4576         330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC  373 (400)
Q Consensus       330 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C  373 (400)
                      |+++|++++||.|++|++.|...+.|..|+++|++++||+|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            3 SGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             cccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            67789999999999999999999999999999999999999987

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.24  E-value=4.8e-12  Score=81.75  Aligned_cols=48  Identities=27%  Similarity=0.513  Sum_probs=43.4

Q ss_pred             HhcCCCCeecccccccccChhhHHHHHh-hcCCCCcccCCCCccccCCc
Q psy4576         333 THTGLKPHCCEICGRSYSTAAYLKVHMS-CHTGETSHTCHLCPQKFRQR  380 (400)
Q Consensus       333 ~h~~~~~~~C~~C~~~f~~~~~L~~H~~-~h~~~~~~~C~~C~~~f~~~  380 (400)
                      .|.+++||.|++|++.|.....|..|++ +|.+++||+|++|++.|+++
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~~   54 (54)
T 2eps_A            6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSSG   54 (54)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCCC
Confidence            3677899999999999999999999997 89999999999999999763

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.24  E-value=1.8e-12  Score=80.72  Aligned_cols=44  Identities=27%  Similarity=0.380  Sum_probs=41.2

Q ss_pred             HHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCC
Q psy4576         330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC  373 (400)
Q Consensus       330 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C  373 (400)
                      |+++|++++||.|++|++.|.....|..|+++|++++||.|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             SCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            56789999999999999999999999999999999999999988

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.7e-12  Score=80.83  Aligned_cols=45  Identities=29%  Similarity=0.464  Sum_probs=41.2

Q ss_pred             HHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCC
Q psy4576         329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC  373 (400)
Q Consensus       329 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C  373 (400)
                      +|+++|++++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            467789999999999999999999999999999999999999876

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.24  E-value=5.7e-12  Score=86.89  Aligned_cols=56  Identities=32%  Similarity=0.772  Sum_probs=45.7

Q ss_pred             cCCCCeeccc--ccccccChhhHHHHHhhcCCCCcccCCC--CccccCCchHHHHHHhhh
Q psy4576         335 TGLKPHCCEI--CGRSYSTAAYLKVHMSCHTGETSHTCHL--CPQKFRQRSSYTLHYKTH  390 (400)
Q Consensus       335 ~~~~~~~C~~--C~~~f~~~~~L~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h  390 (400)
                      ...++|.|..  |++.|.....|..|+++|+++++|+|++  |++.|.....|..|+++|
T Consensus        13 ~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           13 SRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             cccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            4567788877  8888888888888888888888888865  888888888888888765

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=8.9e-12  Score=87.39  Aligned_cols=62  Identities=24%  Similarity=0.401  Sum_probs=51.1

Q ss_pred             CCCCcccccccccCCHHHHHHHHHHhcC---CCCeecccccccccChhhHHHHH-hhcCCCCcccC
Q psy4576         309 GKKPVCTICGKMLIDKRSLANHMNTHTG---LKPHCCEICGRSYSTAAYLKVHM-SCHTGETSHTC  370 (400)
Q Consensus       309 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~---~~~~~C~~C~~~f~~~~~L~~H~-~~h~~~~~~~C  370 (400)
                      .++|.|+.|++.|.....|..|+++|++   +++|.|.+|++.|.....|..|+ ..|.++.+..-
T Consensus         5 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~   70 (78)
T 2d9h_A            5 SSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQ   70 (78)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSSCCS
T ss_pred             CcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCCCcc
Confidence            4556888888888888889999888885   78999999999999999999998 55666666544

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1.7e-12  Score=80.90  Aligned_cols=44  Identities=30%  Similarity=0.433  Sum_probs=40.7

Q ss_pred             HHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCC
Q psy4576         330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC  373 (400)
Q Consensus       330 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C  373 (400)
                      |+++|++++||.|++|++.|.....|..|+++|++++||+|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            56778999999999999999999999999999999999999988

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=2.1e-14  Score=99.65  Aligned_cols=67  Identities=15%  Similarity=0.245  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         324 KRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       324 ~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      ...|..|+++|.+++||.|++|++.|.....|..       +++|.|++|++.|.....|..|+++|++++|+.
T Consensus         3 ~~~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~-------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~   69 (73)
T 2ctu_A            3 SGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR-------RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSG   69 (73)
T ss_dssp             CCSCCCCCCCCCCCSEEECSSSCCEEECCCCCCC-------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSS
T ss_pred             chhHHHHHHHhCCCCCeeCCcccchhCCHHHhCc-------CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCC
Confidence            3457789999999999999999999999988877       789999999999999999999999999988763

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=2.5e-12  Score=80.55  Aligned_cols=44  Identities=30%  Similarity=0.412  Sum_probs=41.2

Q ss_pred             HHHHhcCCCCeecccccccccChhhHHHHHh-hcCCCCcccCCCC
Q psy4576         330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMS-CHTGETSHTCHLC  373 (400)
Q Consensus       330 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~-~h~~~~~~~C~~C  373 (400)
                      |+++|++++||.|++|++.|...+.|..|++ +|++++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             cccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            6778999999999999999999999999999 9999999999988

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=3e-12  Score=79.70  Aligned_cols=44  Identities=27%  Similarity=0.490  Sum_probs=40.2

Q ss_pred             HHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCC
Q psy4576         330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC  373 (400)
Q Consensus       330 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C  373 (400)
                      |+++|++++||.|++|++.|.....|..|+++|++++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            66788999999999999999999999999999999999999876

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.19  E-value=1.7e-11  Score=89.54  Aligned_cols=60  Identities=22%  Similarity=0.363  Sum_probs=56.0

Q ss_pred             CCeecccccccccChhhHHHHHhh-cCCCCc--------ccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         338 KPHCCEICGRSYSTAAYLKVHMSC-HTGETS--------HTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       338 ~~~~C~~C~~~f~~~~~L~~H~~~-h~~~~~--------~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      ..|.|+.|++.|.....|..|+++ |.++++        |.|++|++.|.....|..|+++|++++|+.
T Consensus        24 ~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   92 (95)
T 2ej4_A           24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGP   92 (95)
T ss_dssp             SSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCS
T ss_pred             CCCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCC
Confidence            457899999999999999999998 888887        999999999999999999999999999874

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=1.2e-11  Score=83.54  Aligned_cols=57  Identities=19%  Similarity=0.342  Sum_probs=49.6

Q ss_pred             CCCCcccccccccCCHHHHHHHHHHhcCCCCeecc-cccccccChhhHHHHHhhcCCCCc
Q psy4576         309 GKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCE-ICGRSYSTAAYLKVHMSCHTGETS  367 (400)
Q Consensus       309 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~-~C~~~f~~~~~L~~H~~~h~~~~~  367 (400)
                      .++|.|+.|++.|. ...|..|+++ ++++||.|+ .|+++|...+.|..|+++|....+
T Consensus         8 ~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A            8 KRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             CCEEECSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred             CCCeeccccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhhcccCc
Confidence            34568999999999 8899999988 889999999 999999999999999999877654

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.17  E-value=6.8e-12  Score=76.37  Aligned_cols=42  Identities=24%  Similarity=0.498  Sum_probs=35.5

Q ss_pred             HHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCC
Q psy4576         330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCH  371 (400)
Q Consensus       330 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~  371 (400)
                      |+++|++++||.|++|++.|...+.|..|+++|++++||.|+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            456788888888888888888888888888888888888884

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.17  E-value=7.4e-13  Score=88.33  Aligned_cols=55  Identities=11%  Similarity=0.298  Sum_probs=48.3

Q ss_pred             HHHHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCCccccCCchHHH
Q psy4576         327 LANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYT  384 (400)
Q Consensus       327 l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~  384 (400)
                      |..|+++|++++||.|+.|+++|.....|.   ++|++++||+|++|++.|....++.
T Consensus         2 L~~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~~   56 (62)
T 1vd4_A            2 IETDERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESAM   56 (62)
T ss_dssp             CCCCSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTCS
T ss_pred             hhhHHHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccCcccc
Confidence            345788899999999999999999988886   7899999999999999998876543

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.16  E-value=2e-11  Score=76.62  Aligned_cols=42  Identities=26%  Similarity=0.430  Sum_probs=39.3

Q ss_pred             hcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCCcc
Q psy4576         334 HTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQ  375 (400)
Q Consensus       334 h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~  375 (400)
                      |.++++|.|.+|++.|.....|..|+++|++++||.|++|++
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            667899999999999999999999999999999999999985

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=7.8e-12  Score=77.81  Aligned_cols=43  Identities=26%  Similarity=0.430  Sum_probs=38.6

Q ss_pred             HHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCC
Q psy4576         330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHL  372 (400)
Q Consensus       330 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~  372 (400)
                      |+++|++++||.|++|++.|...+.|..|+++|++++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A            3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             cccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6778889999999999999999999999999999999999974

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.15  E-value=7.2e-12  Score=77.98  Aligned_cols=44  Identities=34%  Similarity=0.538  Sum_probs=38.5

Q ss_pred             HHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCC
Q psy4576         329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHL  372 (400)
Q Consensus       329 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~  372 (400)
                      .|+++|++++||.|++|++.|.....|..|+++|++++||+|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            36778888999999999999999999999999999999999874

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.15  E-value=1.7e-11  Score=75.84  Aligned_cols=42  Identities=21%  Similarity=0.500  Sum_probs=38.7

Q ss_pred             HhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCCc
Q psy4576         333 THTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCP  374 (400)
Q Consensus       333 ~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~  374 (400)
                      .|++++||.|++|++.|...+.|..|+++|+++++|.|++||
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            478889999999999999999999999999999999999996

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=7.1e-12  Score=77.99  Aligned_cols=43  Identities=30%  Similarity=0.489  Sum_probs=38.0

Q ss_pred             HHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCC
Q psy4576         330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHL  372 (400)
Q Consensus       330 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~  372 (400)
                      |+++|++++||.|++|++.|...+.|..|+++|++++||+|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A            3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             SCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             CccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            6778888999999999999999999999999999999999874

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=8.7e-12  Score=77.59  Aligned_cols=44  Identities=30%  Similarity=0.466  Sum_probs=38.2

Q ss_pred             HHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCC
Q psy4576         329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHL  372 (400)
Q Consensus       329 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~  372 (400)
                      .|+++|++++||.|++|++.|...+.|..|+++|++++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             CCCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            36677888899999999999999999999999999999998874

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=9.8e-12  Score=77.34  Aligned_cols=43  Identities=23%  Similarity=0.406  Sum_probs=38.0

Q ss_pred             HHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCC
Q psy4576         330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHL  372 (400)
Q Consensus       330 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~  372 (400)
                      |+++|+++++|.|++|++.|...+.|..|+++|++++||+|++
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A            3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             CCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             CCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            6678888999999999999999999999999999999999864

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=9.3e-12  Score=77.46  Aligned_cols=44  Identities=32%  Similarity=0.505  Sum_probs=38.4

Q ss_pred             HHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCC
Q psy4576         329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHL  372 (400)
Q Consensus       329 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~  372 (400)
                      +|+++|++++||.|++|++.|...+.|..|+++|++++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A            2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             CcccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            36778888999999999999999999999999999999999864

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=9.8e-12  Score=77.34  Aligned_cols=44  Identities=32%  Similarity=0.492  Sum_probs=39.2

Q ss_pred             HHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCC
Q psy4576         329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHL  372 (400)
Q Consensus       329 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~  372 (400)
                      .|+++|++++||.|++|++.|...+.|..|+++|++++||+|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             CCCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            36778889999999999999999999999999999999999974

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=8.8e-12  Score=77.57  Aligned_cols=44  Identities=30%  Similarity=0.510  Sum_probs=38.1

Q ss_pred             HHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCC
Q psy4576         329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHL  372 (400)
Q Consensus       329 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~  372 (400)
                      .|+++|++++||.|++|++.|...+.|..|+++|++++||+|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            36677888899999999999999999999999999999998874

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=9.5e-12  Score=77.40  Aligned_cols=43  Identities=28%  Similarity=0.512  Sum_probs=38.2

Q ss_pred             HHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCC
Q psy4576         330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHL  372 (400)
Q Consensus       330 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~  372 (400)
                      |+++|++++||.|++|++.|.....|..|+++|++++||+|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2emg_A            3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPSS   45 (46)
T ss_dssp             CCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSCC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6678888999999999999999999999999999999999874

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=9.5e-12  Score=77.40  Aligned_cols=43  Identities=33%  Similarity=0.515  Sum_probs=39.8

Q ss_pred             HHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCC
Q psy4576         331 MNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC  373 (400)
Q Consensus       331 ~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C  373 (400)
                      +++|++++||.|++|++.|.....|..|+++|++++||+|++|
T Consensus         4 ~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            4 GSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            3568899999999999999999999999999999999999988

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=8.7e-12  Score=77.59  Aligned_cols=44  Identities=27%  Similarity=0.529  Sum_probs=38.2

Q ss_pred             HHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCC
Q psy4576         329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHL  372 (400)
Q Consensus       329 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~  372 (400)
                      .|+++|++++||.|++|++.|...+.|..|+++|++++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             CccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            36677888899999999999999999999999999999999874

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1e-11  Score=77.23  Aligned_cols=44  Identities=34%  Similarity=0.516  Sum_probs=38.3

Q ss_pred             HHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCC
Q psy4576         329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHL  372 (400)
Q Consensus       329 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~  372 (400)
                      +|+++|++++||.|++|++.|...+.|..|+++|++++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            36778888899999999999999999999999999999999874

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1e-11  Score=75.52  Aligned_cols=42  Identities=24%  Similarity=0.392  Sum_probs=34.1

Q ss_pred             HHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCC
Q psy4576         330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCH  371 (400)
Q Consensus       330 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~  371 (400)
                      |+++|++++||.|++|++.|...+.|..|+++|++++||+|.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            456678888888888888888888888888888888888874

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=9.7e-12  Score=77.36  Aligned_cols=44  Identities=32%  Similarity=0.496  Sum_probs=38.6

Q ss_pred             HHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCC
Q psy4576         329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHL  372 (400)
Q Consensus       329 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~  372 (400)
                      .|+++|++++||.|++|++.|...+.|..|+++|++++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            36678888999999999999999999999999999999999874

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=9.4e-12  Score=77.42  Aligned_cols=43  Identities=30%  Similarity=0.480  Sum_probs=37.5

Q ss_pred             HHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCC
Q psy4576         330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHL  372 (400)
Q Consensus       330 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~  372 (400)
                      |+++|++++||.|++|++.|...+.|..|+++|++++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             CCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCCC
Confidence            6677888899999999999999999999999999999998864

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.1e-11  Score=77.11  Aligned_cols=44  Identities=27%  Similarity=0.492  Sum_probs=38.4

Q ss_pred             HHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCC
Q psy4576         329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHL  372 (400)
Q Consensus       329 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~  372 (400)
                      .|+++|++++||.|++|++.|...+.|..|+++|++++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A            2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTTC
T ss_pred             CCccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            36678888999999999999999999999999999999999874

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.1e-11  Score=77.16  Aligned_cols=44  Identities=32%  Similarity=0.504  Sum_probs=38.9

Q ss_pred             HHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCC
Q psy4576         329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHL  372 (400)
Q Consensus       329 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~  372 (400)
                      .|+++|++++||.|++|++.|.....|..|+++|++++||.|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSCC
T ss_pred             CCccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            36778889999999999999999999999999999999999874

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.2e-11  Score=76.94  Aligned_cols=44  Identities=30%  Similarity=0.538  Sum_probs=38.3

Q ss_pred             HHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCC
Q psy4576         329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHL  372 (400)
Q Consensus       329 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~  372 (400)
                      +|+++|++++||.|++|++.|...+.|..|+++|++++||+|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             CcccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            36778888899999999999999999999999999999999864

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.1e-11  Score=77.17  Aligned_cols=43  Identities=30%  Similarity=0.554  Sum_probs=38.4

Q ss_pred             HHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCC
Q psy4576         330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHL  372 (400)
Q Consensus       330 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~  372 (400)
                      |+++|++++||.|++|++.|.....|..|+++|++++||.|++
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A            3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             CSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTSC
T ss_pred             CCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCCC
Confidence            5677889999999999999999999999999999999999974

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=9.4e-12  Score=77.44  Aligned_cols=44  Identities=32%  Similarity=0.512  Sum_probs=38.9

Q ss_pred             HHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCC
Q psy4576         329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHL  372 (400)
Q Consensus       329 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~  372 (400)
                      .|+++|++++||.|.+|++.|...+.|..|+++|++++||.|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             CCCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            36778889999999999999999999999999999999999974

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.1e-11  Score=77.20  Aligned_cols=44  Identities=30%  Similarity=0.499  Sum_probs=38.2

Q ss_pred             HHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCC
Q psy4576         329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHL  372 (400)
Q Consensus       329 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~  372 (400)
                      .|+++|++++||.|++|++.|.....|..|+++|++++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq1_A            2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCCC
T ss_pred             CcccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            36778888899999999999999999999999999999999864

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.1e-11  Score=76.28  Aligned_cols=42  Identities=26%  Similarity=0.475  Sum_probs=36.3

Q ss_pred             HHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCC
Q psy4576         330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCH  371 (400)
Q Consensus       330 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~  371 (400)
                      |+++|++++||.|++|++.|...+.|..|+++|+++++|+|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             SCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             CccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            667788888899999999999888999998888888888884

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.2e-11  Score=76.88  Aligned_cols=43  Identities=26%  Similarity=0.430  Sum_probs=37.3

Q ss_pred             HHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCC
Q psy4576         330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHL  372 (400)
Q Consensus       330 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~  372 (400)
                      |+++|++++||.|++|++.|.....|..|+++|++++||.|++
T Consensus         3 h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            5677888889999999999999999999999999999998864

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.2e-11  Score=76.87  Aligned_cols=44  Identities=32%  Similarity=0.542  Sum_probs=38.3

Q ss_pred             HHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCC
Q psy4576         329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHL  372 (400)
Q Consensus       329 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~  372 (400)
                      +|+++|++++||.|++|++.|...+.|..|+++|++++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS   45 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCCC
T ss_pred             CccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            36778888999999999999999999999999999999998863

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.1e-11  Score=77.19  Aligned_cols=42  Identities=31%  Similarity=0.433  Sum_probs=38.4

Q ss_pred             HHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCC
Q psy4576         332 NTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLC  373 (400)
Q Consensus       332 ~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C  373 (400)
                      ++|.+++||.|++|++.|.....|..|+++|++++||.|++|
T Consensus         5 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            5 SSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            468889999999999999999999999999999999999987

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=1.4e-11  Score=75.74  Aligned_cols=42  Identities=33%  Similarity=0.564  Sum_probs=34.9

Q ss_pred             HHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCC
Q psy4576         330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCH  371 (400)
Q Consensus       330 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~  371 (400)
                      |+++|++++||.|++|++.|...+.|..|+++|++++||+|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            667788888888888888888888888888888888888874

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=1.5e-11  Score=76.52  Aligned_cols=42  Identities=29%  Similarity=0.463  Sum_probs=36.6

Q ss_pred             HHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCC
Q psy4576         330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCH  371 (400)
Q Consensus       330 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~  371 (400)
                      |+++|++++||.|++|++.|...+.|..|+++|++++||+|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            567788888999999999999999999999899888888886

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.11  E-value=1.1e-11  Score=80.10  Aligned_cols=50  Identities=18%  Similarity=0.185  Sum_probs=27.5

Q ss_pred             ccccChhhHHHHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCC
Q psy4576         347 RSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIP  396 (400)
Q Consensus       347 ~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~  396 (400)
                      +.|.....|..|+++|+++++|.|++|++.|...+.|..|+++|++++|+
T Consensus         4 k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   53 (54)
T 1yui_A            4 KRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPG   53 (54)
T ss_dssp             CCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCC
T ss_pred             cccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCC
Confidence            34455555555555555555555555555555555555555555555543

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=1.5e-11  Score=76.52  Aligned_cols=43  Identities=30%  Similarity=0.542  Sum_probs=37.9

Q ss_pred             HHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCC
Q psy4576         329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCH  371 (400)
Q Consensus       329 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~  371 (400)
                      +|+++|++++||.|++|++.|...+.|..|+++|++++||+|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CCCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             CcccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            3677888889999999999999999999999999999999886

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=1.5e-11  Score=76.50  Aligned_cols=43  Identities=23%  Similarity=0.300  Sum_probs=37.9

Q ss_pred             HHHHhcCCCCeecccccccccChhhHHHHHhhcCC-CCcccCCC
Q psy4576         330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTG-ETSHTCHL  372 (400)
Q Consensus       330 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~-~~~~~C~~  372 (400)
                      |+++|++++||.|++|++.|...+.|..|+++|++ ++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~~   46 (46)
T 2eoy_A            3 SGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSCC
T ss_pred             CccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            66778888999999999999999999999999998 89999874

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=1.5e-11  Score=75.69  Aligned_cols=42  Identities=33%  Similarity=0.744  Sum_probs=35.1

Q ss_pred             HHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCC
Q psy4576         330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCH  371 (400)
Q Consensus       330 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~  371 (400)
                      |+++|++++||.|++|++.|.....|..|+++|++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             SCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            667788888888888888888888888888888888888884

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=1.9e-11  Score=75.19  Aligned_cols=43  Identities=14%  Similarity=0.223  Sum_probs=36.5

Q ss_pred             HHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCC
Q psy4576         329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCH  371 (400)
Q Consensus       329 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~  371 (400)
                      .|+++|++++||.|++|++.|...+.|..|+++|++++||+|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            2 SSGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             CcccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            3667788888888888888888888888888888888888884

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=1.7e-11  Score=75.39  Aligned_cols=42  Identities=21%  Similarity=0.457  Sum_probs=33.5

Q ss_pred             HHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCC
Q psy4576         330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCH  371 (400)
Q Consensus       330 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~  371 (400)
                      |+++|++++||.|++|++.|.....|..|+++|++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            566777888888888888888888888888888888888774

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=1.4e-11  Score=74.89  Aligned_cols=41  Identities=32%  Similarity=0.622  Sum_probs=32.0

Q ss_pred             HHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccC
Q psy4576         330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC  370 (400)
Q Consensus       330 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C  370 (400)
                      |+++|++++||.|++|+++|...+.|..|+++|++++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            55667777888888888888888888888888888877776

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=1.8e-11  Score=74.50  Aligned_cols=41  Identities=34%  Similarity=0.602  Sum_probs=30.8

Q ss_pred             HHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccC
Q psy4576         330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC  370 (400)
Q Consensus       330 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C  370 (400)
                      |+++|++++||.|++|++.|...+.|..|+++|++++||+|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            45567777777777777777777777777777777777776

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.09  E-value=2.2e-11  Score=78.60  Aligned_cols=52  Identities=13%  Similarity=0.169  Sum_probs=48.7

Q ss_pred             ccccCCHHHHHHHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCccc
Q psy4576         318 GKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHT  369 (400)
Q Consensus       318 ~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~  369 (400)
                      ++.|.....|..|+++|++++||.|++|++.|...+.|..|+++|++++||.
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCCC
T ss_pred             ccccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCCC
Confidence            4678888999999999999999999999999999999999999999999874

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=2.1e-11  Score=75.80  Aligned_cols=44  Identities=30%  Similarity=0.513  Sum_probs=38.3

Q ss_pred             HHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCC
Q psy4576         329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHL  372 (400)
Q Consensus       329 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~  372 (400)
                      .|+++|++++||.|++|++.|...+.|..|+++|++++||+|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq3_A            2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSCC
T ss_pred             CcccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            36678888999999999999999999999999999999999863

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=2.2e-11  Score=75.68  Aligned_cols=43  Identities=30%  Similarity=0.515  Sum_probs=37.1

Q ss_pred             HHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCC
Q psy4576         330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHL  372 (400)
Q Consensus       330 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~  372 (400)
                      |+++|++++||.|++|++.|.....|..|+++|++++||+|+.
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enh_A            3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCCC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5567888899999999999999999999999999999998863

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.08  E-value=2.4e-11  Score=73.90  Aligned_cols=41  Identities=22%  Similarity=0.433  Sum_probs=30.5

Q ss_pred             HHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccC
Q psy4576         330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC  370 (400)
Q Consensus       330 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C  370 (400)
                      |+++|++++||.|++|++.|...+.|..|+++|++++||+|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            44567777777777777777777777777777777777776

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=1.5e-11  Score=76.54  Aligned_cols=43  Identities=23%  Similarity=0.447  Sum_probs=37.2

Q ss_pred             HHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCC
Q psy4576         330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHL  372 (400)
Q Consensus       330 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~  372 (400)
                      |+++|.+++||.|++|++.|.....|..|+++|+++++|.|++
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emz_A            3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPSS   45 (46)
T ss_dssp             CCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSCC
T ss_pred             CCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6677888889999999999999999999999998888888863

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=1.6e-11  Score=74.73  Aligned_cols=41  Identities=32%  Similarity=0.569  Sum_probs=32.0

Q ss_pred             HHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccC
Q psy4576         330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC  370 (400)
Q Consensus       330 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C  370 (400)
                      |+++|++++||.|+.|+++|...+.|..|+++|++++||+|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            45667777888888888888888888888888888887776

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.07  E-value=1.2e-10  Score=80.21  Aligned_cols=54  Identities=33%  Similarity=0.670  Sum_probs=48.8

Q ss_pred             CCCCcccc--cccccCCHHHHHHHHHHhcCCCCeeccc--ccccccChhhHHHHHhhc
Q psy4576         309 GKKPVCTI--CGKMLIDKRSLANHMNTHTGLKPHCCEI--CGRSYSTAAYLKVHMSCH  362 (400)
Q Consensus       309 ~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~L~~H~~~h  362 (400)
                      .+++.|+.  |++.|.....|..|+++|++++||.|.+  |++.|.....|..|+++|
T Consensus        15 ~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           15 IRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             cCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            35568988  9999999999999999999999999975  999999999999999876

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.05  E-value=3.5e-11  Score=73.97  Aligned_cols=42  Identities=19%  Similarity=0.414  Sum_probs=34.2

Q ss_pred             HHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCC
Q psy4576         330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCH  371 (400)
Q Consensus       330 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~  371 (400)
                      |+++|++++||.|++|++.|...+.|..|+++|++++||+|+
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            456677888888888888888888888888888888888874

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=2e-11  Score=75.92  Aligned_cols=43  Identities=26%  Similarity=0.403  Sum_probs=36.2

Q ss_pred             HHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCC
Q psy4576         329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCH  371 (400)
Q Consensus       329 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~  371 (400)
                      .|+++|++++||.|++|++.|.....|..|+++|++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             ccccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            3667788888888888888888888888888888888888885

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=2.8e-11  Score=74.40  Aligned_cols=42  Identities=21%  Similarity=0.366  Sum_probs=34.9

Q ss_pred             HHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCC
Q psy4576         330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCH  371 (400)
Q Consensus       330 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~  371 (400)
                      |+++|++++||.|++|++.|.....|..|+++|++++||.|.
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            566788888888888888888888888888888888888873

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=5.7e-11  Score=74.52  Aligned_cols=44  Identities=27%  Similarity=0.406  Sum_probs=40.0

Q ss_pred             HHHHhcCCCCeecc--cccccccChhhHHHHHhhcCCCCcccCCCC
Q psy4576         330 HMNTHTGLKPHCCE--ICGRSYSTAAYLKVHMSCHTGETSHTCHLC  373 (400)
Q Consensus       330 H~~~h~~~~~~~C~--~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C  373 (400)
                      |.++|++++||.|.  .|++.|.....|..|+++|++++||+|++|
T Consensus         3 ~~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            34568899999998  899999999999999999999999999988

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=6.7e-11  Score=72.67  Aligned_cols=41  Identities=27%  Similarity=0.510  Sum_probs=25.7

Q ss_pred             HHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccC
Q psy4576         330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC  370 (400)
Q Consensus       330 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C  370 (400)
                      |+++|++++||.|++|++.|...+.|..|+++|++++||.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A            3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             CCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCC
Confidence            44556666666666666666666666666666666666655

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.02  E-value=1.1e-10  Score=71.21  Aligned_cols=40  Identities=23%  Similarity=0.283  Sum_probs=35.0

Q ss_pred             HhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCC
Q psy4576         333 THTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHL  372 (400)
Q Consensus       333 ~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~  372 (400)
                      +|++++||.|..|++.|...+.|..|+++|++++||.|++
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   43 (43)
T 2yrm_A            4 GSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSSG   43 (43)
T ss_dssp             CCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSCC
T ss_pred             CcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCCC
Confidence            5778889999999999999999999999999999998874

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.00  E-value=9.9e-11  Score=72.67  Aligned_cols=42  Identities=26%  Similarity=0.404  Sum_probs=35.7

Q ss_pred             HHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCC
Q psy4576         331 MNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHL  372 (400)
Q Consensus       331 ~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~  372 (400)
                      +++|++++||.|++|++.|.....|..|+++|++++||+|++
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eom_A            4 GSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCCC
T ss_pred             CCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCCC
Confidence            346788888999999999999999999999999999998864

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=7.8e-11  Score=72.78  Aligned_cols=41  Identities=37%  Similarity=0.600  Sum_probs=36.6

Q ss_pred             HHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCC
Q psy4576         332 NTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHL  372 (400)
Q Consensus       332 ~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~  372 (400)
                      ++|++++||.|.+|++.|.....|..|+++|+++++|.|+.
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (45)
T 2epu_A            5 SSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSSG   45 (45)
T ss_dssp             CCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSCC
T ss_pred             CCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCCC
Confidence            46888899999999999999999999999999999999974

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=3.2e-10  Score=68.39  Aligned_cols=38  Identities=26%  Similarity=0.527  Sum_probs=31.9

Q ss_pred             HhcCCCCeecccccccccChhhHHHHHhhcCCCCcccC
Q psy4576         333 THTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC  370 (400)
Q Consensus       333 ~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C  370 (400)
                      +|++++||.|++|++.|.....|..|+++|++++||+|
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            4 GSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             ccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            47778888888888888888888888888888888877

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.96  E-value=1.9e-11  Score=84.54  Aligned_cols=67  Identities=19%  Similarity=0.238  Sum_probs=57.4

Q ss_pred             HHHHHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCC
Q psy4576         326 SLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVI  395 (400)
Q Consensus       326 ~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~  395 (400)
                      .|..|+++|.+++|+.|..|++.|. ...|..|+ .|.+++||.|+.|++.|. ...|..|++++.+.+.
T Consensus         4 ~L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~C~~~~~-~~~l~~H~~~c~~~~~   70 (75)
T 2d9k_A            4 GSSGHEETECPLRLAVCQHCDLELS-ILKLKEHE-DYCGARTELCGNCGRNVL-VKDLKTHPEVCGREGS   70 (75)
T ss_dssp             CCSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHH-HHHHHCEEECSSSCCEEE-TTGGGTHHHHBTTBSS
T ss_pred             HHHhhCcccCCCcccCCcccChHhh-HHHHHHHH-hHcCCCceEcccCCCcCc-HHHHHHHHHHccCCcC
Confidence            4567888888999999999999995 88999999 899999999999999887 5889999988776543

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.93  E-value=4.6e-10  Score=68.03  Aligned_cols=40  Identities=25%  Similarity=0.429  Sum_probs=37.7

Q ss_pred             HHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       358 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      |+++|+++++|.|++|++.|.+.+.|..|+++|++++|+.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   40 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPS   40 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCC
Confidence            6789999999999999999999999999999999998874

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=5.5e-10  Score=67.68  Aligned_cols=40  Identities=25%  Similarity=0.406  Sum_probs=37.5

Q ss_pred             HHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       358 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      |+++|.+++||.|++|++.|.+.+.|..|+++|.+++|+.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   40 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPS   40 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCC
Confidence            6789999999999999999999999999999999988874

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=6.2e-10  Score=68.24  Aligned_cols=41  Identities=27%  Similarity=0.361  Sum_probs=38.9

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      .|+++|++++||.|++|++.|...+.|..|+++|++++|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (44)
T 2epv_A            2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPS   42 (44)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCC
T ss_pred             CCCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCC
Confidence            48899999999999999999999999999999999999875

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.90  E-value=1e-09  Score=70.60  Aligned_cols=48  Identities=17%  Similarity=0.180  Sum_probs=39.5

Q ss_pred             CcCcccccccCcccccccChhHHHHHHhhhcCCCCcccccccccccCC
Q psy4576          86 SSDVWDEERCRSCGLLSGSITQTYIHYLECKNRGKLYECSLCNESFEN  133 (400)
Q Consensus        86 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~  133 (400)
                      ...++++|.|++|++.|.....|..|+...|.++++|.|.+|++.|.+
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            345678889999999999999999994458888889999999988875

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=98.90  E-value=4.7e-10  Score=69.52  Aligned_cols=44  Identities=27%  Similarity=0.356  Sum_probs=36.3

Q ss_pred             HHhhhcCCCCCcccccccccCCHHHHHHHHHHhcCCCCeecccc
Q psy4576         302 HHQREHQGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEIC  345 (400)
Q Consensus       302 H~~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  345 (400)
                      |++.+.+.++|.|+.|++.|.....|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44333345567999999999999999999999999999999987

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.90  E-value=5.5e-10  Score=68.49  Aligned_cols=41  Identities=29%  Similarity=0.436  Sum_probs=38.5

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      +|+++|++++||.|++|++.|.....|..|+++|++++|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPS   42 (44)
T ss_dssp             CCSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSC
T ss_pred             CCccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCC
Confidence            58899999999999999999999999999999999998874

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=3.5e-10  Score=68.60  Aligned_cols=41  Identities=22%  Similarity=0.386  Sum_probs=38.4

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      +|+++|++++||.|++|++.|...+.|..|+++|++++|+.
T Consensus         1 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   41 (42)
T 2ytb_A            1 GSSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS   41 (42)
T ss_dssp             CCCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCC
T ss_pred             CCccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCC
Confidence            38899999999999999999999999999999999998874

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=5.9e-10  Score=69.05  Aligned_cols=41  Identities=27%  Similarity=0.437  Sum_probs=38.6

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      +|+++|++++||.|++|++.|...+.|..|+++|++++|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSG   42 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSC
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCC
Confidence            58899999999999999999999999999999999998864

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=5.5e-10  Score=69.19  Aligned_cols=41  Identities=29%  Similarity=0.348  Sum_probs=38.5

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      +|+++|+++++|.|++|++.|...+.|..|+++|++++|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSG   42 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCC
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCC
Confidence            58899999999999999999999999999999999998874

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=6.5e-10  Score=68.89  Aligned_cols=41  Identities=27%  Similarity=0.301  Sum_probs=38.5

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      +|+++|+++++|+|++|++.|...+.|..|+++|++++|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSG   42 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCC
T ss_pred             CCCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCC
Confidence            48899999999999999999999999999999999998874

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=6.7e-10  Score=68.81  Aligned_cols=41  Identities=29%  Similarity=0.335  Sum_probs=38.5

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      +|+++|+++++|.|++|++.|...+.|..|+++|++++|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSG   42 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSS
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCC
Confidence            58899999999999999999999999999999999998864

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=7.2e-10  Score=67.92  Aligned_cols=40  Identities=25%  Similarity=0.395  Sum_probs=37.7

Q ss_pred             HHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       358 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      |+++|++++||.|++|++.|.+.+.|..|+++|++++|+.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   40 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSG   40 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCS
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCC
Confidence            6789999999999999999999999999999999998864

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=6.6e-10  Score=67.33  Aligned_cols=40  Identities=20%  Similarity=0.429  Sum_probs=37.6

Q ss_pred             HHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       358 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      |+++|++++||.|++|++.|...+.|..|+++|++++|+.
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   41 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS   41 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTT
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCC
Confidence            7889999999999999999999999999999999998864

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=8.6e-10  Score=68.29  Aligned_cols=44  Identities=25%  Similarity=0.246  Sum_probs=36.3

Q ss_pred             HHhhhcCCCCCcccccccccCCHHHHHHHHHHhcCCCCeecccc
Q psy4576         302 HHQREHQGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEIC  345 (400)
Q Consensus       302 H~~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  345 (400)
                      |++.+.+.++|.|+.|++.|.....|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            54333345567999999999999999999999999999999987

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=7e-10  Score=68.74  Aligned_cols=41  Identities=24%  Similarity=0.286  Sum_probs=38.5

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      +|+++|+++++|.|++|++.|...+.|..|+++|++++|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSG   42 (46)
T ss_dssp             CCCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCS
T ss_pred             CCCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCC
Confidence            48899999999999999999999999999999999998874

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=8.1e-10  Score=68.43  Aligned_cols=44  Identities=25%  Similarity=0.294  Sum_probs=36.3

Q ss_pred             HHhhhcCCCCCcccccccccCCHHHHHHHHHHhcCCCCeecccc
Q psy4576         302 HHQREHQGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEIC  345 (400)
Q Consensus       302 H~~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  345 (400)
                      |++.+.+.++|.|+.|++.|.....|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CcccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            44333345567999999999999999999999999999999987

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=8.4e-10  Score=68.37  Aligned_cols=44  Identities=27%  Similarity=0.348  Sum_probs=36.1

Q ss_pred             HHhhhcCCCCCcccccccccCCHHHHHHHHHHhcCCCCeecccc
Q psy4576         302 HHQREHQGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEIC  345 (400)
Q Consensus       302 H~~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  345 (400)
                      |++.+.+.++|.|+.|++.|.....|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44333344567999999999999999999999999999999987

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=7.3e-10  Score=68.63  Aligned_cols=41  Identities=24%  Similarity=0.314  Sum_probs=38.5

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      +|+++|+++++|.|++|++.|.....|..|+++|.+++|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2eq2_A            2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSG   42 (46)
T ss_dssp             CCCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCC
T ss_pred             CcccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCC
Confidence            58899999999999999999999999999999999998874

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=7e-10  Score=67.96  Aligned_cols=41  Identities=29%  Similarity=0.480  Sum_probs=38.4

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      +|+++|+++++|.|++|++.|.....|..|+++|++++|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPS   42 (44)
T ss_dssp             CCSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSC
T ss_pred             CCccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCC
Confidence            58899999999999999999999999999999999998864

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=6.6e-10  Score=68.85  Aligned_cols=41  Identities=24%  Similarity=0.378  Sum_probs=38.4

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      .|+++|++++||+|++|++.|.....|..|+++|++++|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2ytp_A            2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSG   42 (46)
T ss_dssp             CCCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCS
T ss_pred             CcccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCC
Confidence            48899999999999999999999999999999999998864

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=7.3e-10  Score=68.64  Aligned_cols=41  Identities=27%  Similarity=0.380  Sum_probs=38.6

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      +|+++|+++++|.|++|++.|.+.+.|..|+++|++++|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSG   42 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTS
T ss_pred             CCcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCC
Confidence            48899999999999999999999999999999999998874

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=7.1e-10  Score=68.68  Aligned_cols=41  Identities=34%  Similarity=0.460  Sum_probs=38.5

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      +|+++|++++||.|++|++.|.....|..|+++|++++|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSG   42 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSC
T ss_pred             CccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCC
Confidence            58899999999999999999999999999999999998874

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=98.88  E-value=6.4e-10  Score=68.92  Aligned_cols=41  Identities=27%  Similarity=0.342  Sum_probs=38.6

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      +|+++|++++||.|++|++.|.....|..|+++|++++|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSG   42 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCS
T ss_pred             CCccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCC
Confidence            58899999999999999999999999999999999998874

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=98.88  E-value=7.2e-10  Score=68.67  Aligned_cols=41  Identities=29%  Similarity=0.337  Sum_probs=38.5

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      +|+++|++++||+|++|++.|...+.|..|+++|.+++|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSG   42 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSC
T ss_pred             CCcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcC
Confidence            48899999999999999999999999999999999998864

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.88  E-value=6.8e-10  Score=68.78  Aligned_cols=41  Identities=24%  Similarity=0.320  Sum_probs=38.4

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      .|+++|.+++||.|++|++.|.....|..|+++|.+++|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSG   42 (46)
T ss_dssp             CCCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSS
T ss_pred             CCCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCC
Confidence            48899999999999999999999999999999999998864

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=7.7e-10  Score=68.53  Aligned_cols=41  Identities=29%  Similarity=0.439  Sum_probs=38.6

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      .|+++|+++++|.|++|++.|.....|..|+++|++++|+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2em3_A            2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSG   42 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCC
Confidence            58899999999999999999999999999999999998874

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=8.3e-10  Score=68.39  Aligned_cols=41  Identities=24%  Similarity=0.386  Sum_probs=38.4

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      .|+++|++++||.|++|++.|.+...|..|+++|++++|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2emf_A            2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSG   42 (46)
T ss_dssp             CCCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSC
T ss_pred             ccccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            48899999999999999999999999999999999998864

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=98.87  E-value=6.7e-10  Score=68.80  Aligned_cols=41  Identities=22%  Similarity=0.318  Sum_probs=38.6

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      +|+++|++++||.|++|++.|...+.|..|+++|++++|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSG   42 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            58899999999999999999999999999999999998874

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=8.4e-10  Score=68.37  Aligned_cols=41  Identities=24%  Similarity=0.373  Sum_probs=38.5

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      +|+++|++++||.|++|++.|.....|..|+++|.+++|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSG   42 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSS
T ss_pred             CcccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCC
Confidence            58899999999999999999999999999999999998864

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=5.7e-10  Score=69.13  Aligned_cols=41  Identities=22%  Similarity=0.425  Sum_probs=38.5

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      +|+++|++++||.|++|++.|.....|..|+++|++++|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSG   42 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSS
T ss_pred             CccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCC
Confidence            58899999999999999999999999999999999998864

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=7.7e-10  Score=68.52  Aligned_cols=41  Identities=27%  Similarity=0.391  Sum_probs=38.4

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      +|+++|++++||+|++|++.|.....|..|+++|++++|+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSG   42 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSC
T ss_pred             CCccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCC
Confidence            58899999999999999999999999999999999998864

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=8.3e-10  Score=68.38  Aligned_cols=41  Identities=24%  Similarity=0.345  Sum_probs=38.5

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      +|+++|+++++|.|++|++.|.....|..|+++|++++|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSG   42 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCS
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            58899999999999999999999999999999999998864

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.87  E-value=1.1e-09  Score=67.88  Aligned_cols=41  Identities=29%  Similarity=0.395  Sum_probs=38.4

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      .|+++|+++++|.|++|++.|.+...|..|+++|++++|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2ely_A            2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSG   42 (46)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCS
T ss_pred             CCCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCC
Confidence            48899999999999999999999999999999999998864

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=7e-10  Score=68.73  Aligned_cols=41  Identities=24%  Similarity=0.382  Sum_probs=38.5

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      +|+++|++++||+|++|++.|.....|..|+++|.+++|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSG   42 (46)
T ss_dssp             CCCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTT
T ss_pred             CcccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCC
Confidence            58899999999999999999999999999999999998864

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=1e-09  Score=67.95  Aligned_cols=41  Identities=27%  Similarity=0.398  Sum_probs=38.4

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      .|+++|+++++|.|++|++.|.....|..|+++|++++|+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2emi_A            2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSG   42 (46)
T ss_dssp             CCCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCS
T ss_pred             CCCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCC
Confidence            48899999999999999999999999999999999998864

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=7.1e-10  Score=68.68  Aligned_cols=44  Identities=32%  Similarity=0.470  Sum_probs=35.5

Q ss_pred             HHhhhcCCCCCcccccccccCCHHHHHHHHHHhcCCCCeecccc
Q psy4576         302 HHQREHQGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEIC  345 (400)
Q Consensus       302 H~~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  345 (400)
                      |++.+.+.++|.|+.|++.|.....|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44333345566999999999999999999999999999999887

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.87  E-value=1e-09  Score=66.43  Aligned_cols=40  Identities=25%  Similarity=0.405  Sum_probs=37.7

Q ss_pred             HHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       358 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      |+++|.+++||.|++|++.|...+.|..|+++|.+++|+.
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~   41 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS   41 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCC
Confidence            6789999999999999999999999999999999998874

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=7.7e-10  Score=68.54  Aligned_cols=41  Identities=27%  Similarity=0.306  Sum_probs=38.4

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      +|+++|+++++|.|++|++.|.....|..|+++|++++|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2yti_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSG   42 (46)
T ss_dssp             CCCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSS
T ss_pred             CCCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCC
Confidence            48899999999999999999999999999999999998864

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=9.8e-10  Score=68.06  Aligned_cols=39  Identities=31%  Similarity=0.413  Sum_probs=34.2

Q ss_pred             cCCCCCcccccccccCCHHHHHHHHHHhcCCCCeecccc
Q psy4576         307 HQGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEIC  345 (400)
Q Consensus       307 h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  345 (400)
                      .+.++|.|+.|++.|.....|..|+++|++++||.|++|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            8 TGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             SSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            345567999999999999999999999999999999987

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=8.5e-10  Score=68.34  Aligned_cols=41  Identities=24%  Similarity=0.412  Sum_probs=38.6

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      .|+++|++++||.|++|++.|...+.|..|+++|++++|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSG   42 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCC
Confidence            58899999999999999999999999999999999998874

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=9.6e-10  Score=68.07  Aligned_cols=41  Identities=20%  Similarity=0.299  Sum_probs=38.5

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      +|+++|++++||.|++|++.|.....|..|+++|++++|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSG   42 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCS
T ss_pred             CCCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCC
Confidence            58899999999999999999999999999999999998864

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=6.7e-10  Score=68.81  Aligned_cols=44  Identities=30%  Similarity=0.325  Sum_probs=36.1

Q ss_pred             HHhhhcCCCCCcccccccccCCHHHHHHHHHHhcCCCCeecccc
Q psy4576         302 HHQREHQGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEIC  345 (400)
Q Consensus       302 H~~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  345 (400)
                      |++.+.+.++|.|+.|++.|.....|..|+++|++++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             cccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            54333344556999999999999999999999999999999987

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=7.2e-10  Score=67.91  Aligned_cols=41  Identities=29%  Similarity=0.446  Sum_probs=38.4

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      +|+++|+++++|.|++|++.|.....|..|+++|++++|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (44)
T 2en7_A            2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPS   42 (44)
T ss_dssp             CSCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSC
T ss_pred             CCCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCC
Confidence            48899999999999999999999999999999999998864

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=7.1e-10  Score=68.70  Aligned_cols=44  Identities=27%  Similarity=0.346  Sum_probs=35.8

Q ss_pred             HHhhhcCCCCCcccccccccCCHHHHHHHHHHhcCCCCeecccc
Q psy4576         302 HHQREHQGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEIC  345 (400)
Q Consensus       302 H~~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  345 (400)
                      |++.+.+.++|.|+.|++.|.....|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            44333344566999999999999999999999999999999887

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=8.8e-10  Score=68.26  Aligned_cols=41  Identities=27%  Similarity=0.365  Sum_probs=38.4

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      +|+++|++++||.|++|++.|...+.|..|+++|++++|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSG   42 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCC
Confidence            58899999999999999999999999999999999998864

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=7.3e-10  Score=67.89  Aligned_cols=41  Identities=29%  Similarity=0.407  Sum_probs=38.4

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      .|+++|++++||.|++|++.|.....|..|+++|++++|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (44)
T 2eoj_A            2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPS   42 (44)
T ss_dssp             CSCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCC
T ss_pred             CCccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCC
Confidence            48899999999999999999999999999999999988864

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.86  E-value=9.7e-10  Score=68.07  Aligned_cols=41  Identities=24%  Similarity=0.353  Sum_probs=38.5

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      .|+++|++++||+|++|++.|.....|..|+++|.+++|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2em4_A            2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSG   42 (46)
T ss_dssp             CSCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCC
T ss_pred             CCccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCC
Confidence            48899999999999999999999999999999999998874

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=7.9e-10  Score=68.49  Aligned_cols=41  Identities=29%  Similarity=0.362  Sum_probs=38.4

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      .|+++|+++++|.|++|++.|.....|..|+++|++++|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2eq1_A            2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSG   42 (46)
T ss_dssp             CCCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSS
T ss_pred             CcccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCC
Confidence            48899999999999999999999999999999999998864

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=9.6e-10  Score=68.09  Aligned_cols=41  Identities=24%  Similarity=0.367  Sum_probs=38.5

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      +|+++|+++++|.|++|++.|.....|..|+++|.+++|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2em6_A            2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSG   42 (46)
T ss_dssp             CCCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCC
T ss_pred             CCccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCC
Confidence            48899999999999999999999999999999999998874

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=8.2e-10  Score=68.41  Aligned_cols=41  Identities=29%  Similarity=0.367  Sum_probs=38.4

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      +|+++|++++||.|++|++.|...+.|..|+++|++++|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2eq0_A            2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSG   42 (46)
T ss_dssp             CCCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSC
T ss_pred             CCCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCC
Confidence            48899999999999999999999999999999999998864

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=7.4e-10  Score=68.62  Aligned_cols=44  Identities=30%  Similarity=0.422  Sum_probs=35.7

Q ss_pred             HHhhhcCCCCCcccccccccCCHHHHHHHHHHhcCCCCeecccc
Q psy4576         302 HHQREHQGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEIC  345 (400)
Q Consensus       302 H~~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  345 (400)
                      |++.+.+.++|.|+.|++.|.....|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            44333344556999999999999999999999999999999987

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.86  E-value=7.8e-10  Score=68.51  Aligned_cols=41  Identities=24%  Similarity=0.361  Sum_probs=38.5

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      +|+++|+++++|.|++|++.|.+.+.|..|+++|++++|+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSG   42 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSS
T ss_pred             CCcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCC
Confidence            58899999999999999999999999999999999998864

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=1.1e-09  Score=67.83  Aligned_cols=41  Identities=20%  Similarity=0.279  Sum_probs=38.2

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      .|+++|++++||.|++|++.|.....|..|+++|++++|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2eoh_A            2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSG   42 (46)
T ss_dssp             CCCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCS
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCC
Confidence            38899999999999999999999999999999999988864

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=1.2e-09  Score=67.69  Aligned_cols=41  Identities=22%  Similarity=0.290  Sum_probs=38.3

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      .|+++|.++++|.|++|++.|.....|..|+++|++++|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2epz_A            2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSG   42 (46)
T ss_dssp             CCCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCS
T ss_pred             CCCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCC
Confidence            38899999999999999999999999999999999998864

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=8.5e-10  Score=68.33  Aligned_cols=44  Identities=25%  Similarity=0.373  Sum_probs=35.8

Q ss_pred             HHhhhcCCCCCcccccccccCCHHHHHHHHHHhcCCCCeecccc
Q psy4576         302 HHQREHQGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEIC  345 (400)
Q Consensus       302 H~~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  345 (400)
                      |++.+.+.++|.|+.|++.|.....|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            44333344566999999999999999999999999999999987

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=1.1e-09  Score=67.90  Aligned_cols=41  Identities=27%  Similarity=0.358  Sum_probs=38.4

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      .|+++|++++||.|++|++.|...+.|..|+++|++++|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2ene_A            2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSG   42 (46)
T ss_dssp             CCCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCS
T ss_pred             CcccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCC
Confidence            48899999999999999999999999999999999988864

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=8.6e-10  Score=68.31  Aligned_cols=41  Identities=27%  Similarity=0.421  Sum_probs=38.4

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      .|+++|+++++|.|++|++.|.+...|..|+++|++++|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSG   42 (46)
T ss_dssp             CCCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSC
T ss_pred             CCCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCC
Confidence            48899999999999999999999999999999999998864

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=8.7e-10  Score=68.28  Aligned_cols=41  Identities=27%  Similarity=0.346  Sum_probs=38.4

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      +|+++|+++++|.|++|++.|.....|..|+++|.+++|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~   42 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSG   42 (46)
T ss_dssp             CCSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSC
T ss_pred             CCCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcC
Confidence            48899999999999999999999999999999999998864

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=9.2e-10  Score=68.18  Aligned_cols=41  Identities=24%  Similarity=0.377  Sum_probs=38.6

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      +|+++|+++++|.|++|++.|...+.|..|+++|++++|+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSG   42 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCC
Confidence            58899999999999999999999999999999999998864

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=9.6e-10  Score=68.08  Aligned_cols=44  Identities=32%  Similarity=0.385  Sum_probs=34.7

Q ss_pred             HHhhhcCCCCCcccccccccCCHHHHHHHHHHhcCCCCeecccc
Q psy4576         302 HHQREHQGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEIC  345 (400)
Q Consensus       302 H~~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  345 (400)
                      |++.+.+.++|.|+.|++.|.....|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            33233344556899999999999999999999999999999887

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=1.2e-09  Score=67.67  Aligned_cols=41  Identities=24%  Similarity=0.383  Sum_probs=38.4

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      .|+++|+++++|.|++|++.|.....|..|+++|++++|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2emg_A            2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSG   42 (46)
T ss_dssp             CCCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCC
Confidence            48899999999999999999999999999999999998864

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=8.8e-10  Score=68.26  Aligned_cols=41  Identities=27%  Similarity=0.361  Sum_probs=38.4

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      +|+++|+++++|.|++|++.|.....|..|+++|++++|+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSG   42 (46)
T ss_dssp             CCCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSC
T ss_pred             CCccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCC
Confidence            48899999999999999999999999999999999998864

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=6.7e-10  Score=67.30  Aligned_cols=40  Identities=20%  Similarity=0.302  Sum_probs=37.8

Q ss_pred             HHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       358 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      |+++|++++||.|++|++.|.+...|..|+++|.+++|+.
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   41 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSS   41 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCC
Confidence            7889999999999999999999999999999999998874

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.85  E-value=8.8e-10  Score=68.25  Aligned_cols=41  Identities=29%  Similarity=0.423  Sum_probs=38.5

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      +|+++|++++||.|++|++.|.....|..|+++|++++|+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSG   42 (46)
T ss_dssp             CCCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSC
T ss_pred             CccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCC
Confidence            58899999999999999999999999999999999998864

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.84  E-value=1.1e-09  Score=67.07  Aligned_cols=41  Identities=24%  Similarity=0.312  Sum_probs=38.5

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      .|+++|.++++|.|++|++.|.....|..|+++|.+++|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (44)
T 2emb_A            2 SSGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPS   42 (44)
T ss_dssp             CCCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTT
T ss_pred             CcccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcC
Confidence            58899999999999999999999999999999999998864

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=9.6e-10  Score=68.08  Aligned_cols=44  Identities=30%  Similarity=0.379  Sum_probs=35.2

Q ss_pred             HHhhhcCCCCCcccccccccCCHHHHHHHHHHhcCCCCeecccc
Q psy4576         302 HHQREHQGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEIC  345 (400)
Q Consensus       302 H~~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  345 (400)
                      |++.+.+.++|.|+.|++.|.....|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            44333345566899999999999999999999999999999887

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=7.8e-10  Score=68.50  Aligned_cols=44  Identities=30%  Similarity=0.517  Sum_probs=35.6

Q ss_pred             HHhhhcCCCCCcccccccccCCHHHHHHHHHHhcCCCCeecccc
Q psy4576         302 HHQREHQGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEIC  345 (400)
Q Consensus       302 H~~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  345 (400)
                      |++.+.+.++|.|+.|++.|.....|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            44333344556999999999999999999999999999999887

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.84  E-value=1.4e-09  Score=67.39  Aligned_cols=41  Identities=27%  Similarity=0.332  Sum_probs=38.4

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      .|+++|++++||.|++|++.|.+...|..|+++|++++|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2em9_A            2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSG   42 (46)
T ss_dssp             CSCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCS
T ss_pred             CCCCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCC
Confidence            48899999999999999999999999999999999998864

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.84  E-value=1.4e-09  Score=67.37  Aligned_cols=41  Identities=24%  Similarity=0.253  Sum_probs=38.3

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      .|+++|+++++|.|++|++.|.+...|..|+++|++++|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2em7_A            2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSG   42 (46)
T ss_dssp             CCCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSS
T ss_pred             CCCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCC
Confidence            48899999999999999999999999999999999998864

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=9.6e-10  Score=68.09  Aligned_cols=38  Identities=26%  Similarity=0.261  Sum_probs=32.1

Q ss_pred             CCCCCcccccccccCCHHHHHHHHHHhcCCCCeecccc
Q psy4576         308 QGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEIC  345 (400)
Q Consensus       308 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  345 (400)
                      +.++|.|+.|++.|.....|..|+++|++++||.|++|
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            9 VEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            44556888899999988999999889999999999887

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=8.5e-10  Score=68.34  Aligned_cols=44  Identities=18%  Similarity=0.194  Sum_probs=35.6

Q ss_pred             HHhhhcCCCCCcccccccccCCHHHHHHHHHHhcCCCCeecccc
Q psy4576         302 HHQREHQGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEIC  345 (400)
Q Consensus       302 H~~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  345 (400)
                      |++.+.+.++|.|+.|++.|...+.|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            54333344556999999999999999999999999999999887

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=7.2e-10  Score=68.66  Aligned_cols=41  Identities=29%  Similarity=0.401  Sum_probs=38.5

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      +|+++|++++||.|++|++.|...+.|..|+++|++++|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSG   42 (46)
T ss_dssp             CCCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSC
T ss_pred             CcCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCC
Confidence            48899999999999999999999999999999999998864

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=1.3e-09  Score=67.53  Aligned_cols=41  Identities=27%  Similarity=0.385  Sum_probs=38.5

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      .|+++|+++++|.|++|++.|.....|..|+++|.+++|+.
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2en9_A            2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSG   42 (46)
T ss_dssp             CCCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCS
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCC
Confidence            47899999999999999999999999999999999998874

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=9.7e-10  Score=68.07  Aligned_cols=41  Identities=32%  Similarity=0.372  Sum_probs=38.5

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      +|+++|+++++|.|++|++.|.....|..|+++|++++|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2eq3_A            2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSG   42 (46)
T ss_dssp             CCCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCC
T ss_pred             CcccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCC
Confidence            48899999999999999999999999999999999998874

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=1.4e-09  Score=67.36  Aligned_cols=40  Identities=28%  Similarity=0.382  Sum_probs=37.7

Q ss_pred             HHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       358 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      |+++|++++||.|++|++.|.....|..|+++|++++|+.
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2eon_A            3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSG   42 (46)
T ss_dssp             CSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCT
T ss_pred             CCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCC
Confidence            7889999999999999999999999999999999998864

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=1.6e-09  Score=67.03  Aligned_cols=41  Identities=24%  Similarity=0.374  Sum_probs=38.4

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      .|+++|+++++|.|++|++.|.....|..|+++|.+++|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2em2_A            2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSG   42 (46)
T ss_dssp             CCCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSC
T ss_pred             CCCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            48899999999999999999999999999999999998864

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=7.4e-10  Score=68.62  Aligned_cols=41  Identities=27%  Similarity=0.371  Sum_probs=38.6

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      +|+++|+++++|.|++|++.|.....|..|+++|++++|+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSG   42 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCC
Confidence            58899999999999999999999999999999999998874

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=1.1e-09  Score=67.89  Aligned_cols=44  Identities=32%  Similarity=0.387  Sum_probs=35.4

Q ss_pred             HHhhhcCCCCCcccccccccCCHHHHHHHHHHhcCCCCeecccc
Q psy4576         302 HHQREHQGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEIC  345 (400)
Q Consensus       302 H~~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  345 (400)
                      |++.+.+.++|.|+.|++.|.....|..|+++|++++||.|++|
T Consensus         3 h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            44333344556999999999999999999999999999999887

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.82  E-value=1.2e-09  Score=67.56  Aligned_cols=41  Identities=24%  Similarity=0.331  Sum_probs=34.7

Q ss_pred             hhcC-CCCCcccccccccCCHHHHHHHHHHhcCCCCeecccc
Q psy4576         305 REHQ-GKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEIC  345 (400)
Q Consensus       305 ~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  345 (400)
                      +.|. .++|.|+.|++.|.....|..|+++|++++||+|++|
T Consensus         5 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            5 SSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             cccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            3444 4556999999999999999999999999999999887

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=7.5e-10  Score=67.85  Aligned_cols=41  Identities=27%  Similarity=0.301  Sum_probs=38.6

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      +|+++|++++||.|++|++.|.....|..|+++|++++|+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   42 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPS   42 (44)
T ss_dssp             CCCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCS
T ss_pred             CCCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCC
Confidence            48899999999999999999999999999999999998874

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=1.8e-09  Score=66.80  Aligned_cols=40  Identities=28%  Similarity=0.428  Sum_probs=37.7

Q ss_pred             HHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       358 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      |+++|+++++|.|++|++.|.....|..|+++|++++|+.
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2enh_A            3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSG   42 (46)
T ss_dssp             CCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCC
Confidence            7789999999999999999999999999999999998864

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.82  E-value=1.3e-09  Score=67.52  Aligned_cols=41  Identities=24%  Similarity=0.334  Sum_probs=34.2

Q ss_pred             hhcC-CCCCcccccccccCCHHHHHHHHHHhcCCCCeecccc
Q psy4576         305 REHQ-GKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEIC  345 (400)
Q Consensus       305 ~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  345 (400)
                      +.|. .++|.|+.|++.|.....|..|+++|++++||.|++|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            5 SSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             SCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            3444 4556999999999999999999999999999999887

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=7.9e-10  Score=68.49  Aligned_cols=41  Identities=24%  Similarity=0.311  Sum_probs=38.4

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      +|+++|++++||.|++|++.|.....|..|+++|++++|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSG   42 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSS
T ss_pred             ccccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCC
Confidence            58899999999999999999999999999999999988864

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=8.9e-10  Score=68.24  Aligned_cols=44  Identities=27%  Similarity=0.304  Sum_probs=34.4

Q ss_pred             HHhhhcCCCCCcccccccccCCHHHHHHHHHHhcCCCCeecccc
Q psy4576         302 HHQREHQGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEIC  345 (400)
Q Consensus       302 H~~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  345 (400)
                      |++.+.+.++|.|+.|++.|.....|..|+++|++++||.|++|
T Consensus         3 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            44333344556899999999999999999999999999999887

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=1.4e-09  Score=67.33  Aligned_cols=41  Identities=24%  Similarity=0.303  Sum_probs=38.4

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      .|+++|+++++|.|++|++.|.....|..|+++|++++|+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~   42 (46)
T 2eor_A            2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSG   42 (46)
T ss_dssp             CSSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSS
T ss_pred             CCCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCC
Confidence            48899999999999999999999999999999999998864

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=1.8e-09  Score=66.88  Aligned_cols=41  Identities=22%  Similarity=0.284  Sum_probs=37.9

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCC-CCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHP-GVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~-~~~~~  397 (400)
                      .|+++|.+++||.|++|++.|.....|..|+++|.+ ++|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~   43 (46)
T 2eoy_A            2 SSGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGP   43 (46)
T ss_dssp             CCCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSS
T ss_pred             CCccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCC
Confidence            388999999999999999999999999999999998 88764

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.81  E-value=1.9e-09  Score=66.73  Aligned_cols=41  Identities=17%  Similarity=0.280  Sum_probs=38.2

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      .|+++|+++++|.|++|++.|.+...|..|+++|++++|+.
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2el6_A            2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSG   42 (46)
T ss_dssp             CSCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCS
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCC
Confidence            47889999999999999999999999999999999998864

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.80  E-value=3e-09  Score=63.18  Aligned_cols=37  Identities=22%  Similarity=0.388  Sum_probs=25.3

Q ss_pred             hcCCCCeecccccccccChhhHHHHHhhcCCCCcccC
Q psy4576         334 HTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTC  370 (400)
Q Consensus       334 h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C  370 (400)
                      |++++||.|++|++.|...+.|..|+++|++++||.+
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            4556677777777777777777777777777776654

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=1.5e-09  Score=67.22  Aligned_cols=38  Identities=29%  Similarity=0.277  Sum_probs=33.2

Q ss_pred             CCCCCcccccccccCCHHHHHHHHHHhcCCCCeecccc
Q psy4576         308 QGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEIC  345 (400)
Q Consensus       308 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  345 (400)
                      +.++|.|+.|++.|.....|..|+++|++++||.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            9 GEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             SCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            34556999999999999999999999999999999887

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=1.1e-09  Score=67.80  Aligned_cols=41  Identities=24%  Similarity=0.371  Sum_probs=38.4

Q ss_pred             HHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         357 VHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       357 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      +|+++|.++++|+|++|++.|.....|..|+++|.+++|+.
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2emz_A            2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSG   42 (46)
T ss_dssp             CCCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCC
T ss_pred             CCCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCC
Confidence            48899999999999999999999999999999999988864

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.78  E-value=2.9e-09  Score=65.17  Aligned_cols=40  Identities=25%  Similarity=0.332  Sum_probs=37.7

Q ss_pred             HHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       358 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      |+++|.++++|.|++|++.|.....|..|+++|.+++|+.
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPS   42 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCC
Confidence            7789999999999999999999999999999999998874

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.76  E-value=3.5e-09  Score=62.00  Aligned_cols=35  Identities=26%  Similarity=0.430  Sum_probs=24.2

Q ss_pred             HHhhcCCCCcccCCCCccccCCchHHHHHHhhhCC
Q psy4576         358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHP  392 (400)
Q Consensus       358 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~  392 (400)
                      |+++|++++||+|+.|++.|.....|..|+++|++
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   36 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhcc
Confidence            56666777777777777777777777777766654

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=2.4e-09  Score=66.60  Aligned_cols=38  Identities=37%  Similarity=0.484  Sum_probs=31.9

Q ss_pred             CCCCCcccccccccCCHHHHHHHHH-HhcCCCCeecccc
Q psy4576         308 QGKKPVCTICGKMLIDKRSLANHMN-THTGLKPHCCEIC  345 (400)
Q Consensus       308 ~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C  345 (400)
                      +.++|.|+.|++.|.....|..|++ +|++++||.|++|
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            9 GKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             CCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            3455688888888888888889988 8888899999887

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.76  E-value=3.3e-09  Score=62.15  Aligned_cols=36  Identities=31%  Similarity=0.537  Sum_probs=22.7

Q ss_pred             hhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCC
Q psy4576         360 SCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVI  395 (400)
Q Consensus       360 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~  395 (400)
                      ++|++++||.|++|++.|.....|..|+++|++++|
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            2 SSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            345666666666666666666666666666665543

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.75  E-value=5.7e-09  Score=64.15  Aligned_cols=39  Identities=23%  Similarity=0.430  Sum_probs=34.0

Q ss_pred             CCCCCcccccccccCCHHHHHHHHHHhcCCCCeeccccc
Q psy4576         308 QGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEICG  346 (400)
Q Consensus       308 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~  346 (400)
                      ..++|.|+.|++.|.....|..|+++|+++++|.|++||
T Consensus         7 ~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            7 GEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             SCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            345669999999999999999999999999999999986

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.73  E-value=6.9e-09  Score=68.10  Aligned_cols=39  Identities=15%  Similarity=0.295  Sum_probs=32.3

Q ss_pred             hcCCCCeeccc--ccccccChhhHHHHH-hhcCCCCcccCCC
Q psy4576         334 HTGLKPHCCEI--CGRSYSTAAYLKVHM-SCHTGETSHTCHL  372 (400)
Q Consensus       334 h~~~~~~~C~~--C~~~f~~~~~L~~H~-~~h~~~~~~~C~~  372 (400)
                      .++++||+|..  |+++|...+.|.+|+ ++|++++||.|..
T Consensus        22 ~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             SCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             ccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            46788999965  999999999999997 6799999988854

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.71  E-value=3.6e-09  Score=61.94  Aligned_cols=36  Identities=33%  Similarity=0.524  Sum_probs=33.0

Q ss_pred             HHHHhcCCCCeecccccccccChhhHHHHHhhcCCC
Q psy4576         330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGE  365 (400)
Q Consensus       330 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~  365 (400)
                      |+++|++++||+|+.|++.|.....|..|+++|+++
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhccC
Confidence            677899999999999999999999999999999874

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.70  E-value=9.2e-09  Score=61.76  Aligned_cols=38  Identities=32%  Similarity=0.516  Sum_probs=35.3

Q ss_pred             hhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         360 SCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       360 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      ++|++++||.|++|++.|.....|..|+++|++++|+.
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   40 (41)
T 2ept_A            3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSS   40 (41)
T ss_dssp             SSCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSC
T ss_pred             CccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcC
Confidence            46899999999999999999999999999999998864

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.70  E-value=9.6e-09  Score=59.19  Aligned_cols=33  Identities=24%  Similarity=0.486  Sum_probs=18.8

Q ss_pred             cCCCCcccCCCCccccCCchHHHHHHhhhCCCC
Q psy4576         362 HTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGV  394 (400)
Q Consensus       362 h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~  394 (400)
                      |+++++|.|++|++.|...+.|..|+++|++++
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~k   34 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVHGAA   34 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTSCTT
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHcCCC
Confidence            445555555555555555555555555555544

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.70  E-value=1.1e-08  Score=63.92  Aligned_cols=42  Identities=14%  Similarity=0.234  Sum_probs=33.6

Q ss_pred             cCcccccccCcccccccChhHHHHHHhhhcCCCCccccccccc
Q psy4576          87 SDVWDEERCRSCGLLSGSITQTYIHYLECKNRGKLYECSLCNE  129 (400)
Q Consensus        87 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~  129 (400)
                      ...+++|.|.+|++.|.....|..| +..|.++++|.|.+|++
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H-~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            7 GRTRKQVACEICGKIFRDVYHLNRH-KLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCSEEETTTTEEESSHHHHHHH-GGGSCSCCCCCSCCCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHH-HHhcCCCCCccCCCCCC
Confidence            4566778888888888888888888 77788888888888874

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.69  E-value=3.9e-09  Score=61.78  Aligned_cols=36  Identities=22%  Similarity=0.498  Sum_probs=32.0

Q ss_pred             HHhcCCCCeecccccccccChhhHHHHHhhcCCCCc
Q psy4576         332 NTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETS  367 (400)
Q Consensus       332 ~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~  367 (400)
                      ++|++++||.|..|++.|...+.|..|+++|++++|
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            2 SSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            458889999999999999999999999999998864

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.69  E-value=3.2e-10  Score=80.85  Aligned_cols=57  Identities=16%  Similarity=0.190  Sum_probs=42.0

Q ss_pred             HHhcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCC
Q psy4576         332 NTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHP  392 (400)
Q Consensus       332 ~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~  392 (400)
                      ++|++++||.|++|++.|.....|..|+++|++++||+|..|.    ....|..|++.|.+
T Consensus        18 ~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~----~~~~~~~~~~~~~~   74 (88)
T 1x6f_A           18 GPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQE----RRKQLLSKQKYADG   74 (88)
T ss_dssp             CSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCS----CCCCCCCCCCCCCC
T ss_pred             cccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhh----hHHHHHhhhccccc
Confidence            4577778888888888888888888888888888888886654    44556666666665

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=6.4e-09  Score=64.26  Aligned_cols=38  Identities=32%  Similarity=0.364  Sum_probs=32.0

Q ss_pred             CCCCCcccccccccCCHHHHHHHHHHhcCCCCeecccc
Q psy4576         308 QGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEIC  345 (400)
Q Consensus       308 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  345 (400)
                      +.++|.|+.|++.|.....|..|+++|++++||.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            9 GEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             CCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            34556888899999988999999888998899999887

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.68  E-value=8.6e-09  Score=63.66  Aligned_cols=40  Identities=28%  Similarity=0.380  Sum_probs=36.8

Q ss_pred             HHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       358 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      ++++|+++++|+|++|++.|.....|..|+++|++++|+.
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2eom_A            3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSG   42 (46)
T ss_dssp             CCCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSS
T ss_pred             CCCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCC
Confidence            3578999999999999999999999999999999998874

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.68  E-value=1.3e-08  Score=58.71  Aligned_cols=33  Identities=21%  Similarity=0.580  Sum_probs=18.2

Q ss_pred             cCCCCcccCCCCccccCCchHHHHHHhhhCCCC
Q psy4576         362 HTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGV  394 (400)
Q Consensus       362 h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~  394 (400)
                      |++++||.|++|++.|...+.|..|+++|++++
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~   34 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTL   34 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCC
Confidence            445555555555555555555555555555444

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.68  E-value=3.2e-10  Score=75.33  Aligned_cols=53  Identities=9%  Similarity=0.178  Sum_probs=39.6

Q ss_pred             HHHhhhcCCCCCcccccccccCCHHHHHHHHHHhcCCCCeecccccccccChhhHH
Q psy4576         301 EHHQREHQGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLK  356 (400)
Q Consensus       301 ~H~~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~  356 (400)
                      .|++.+.+..+|.|+.|++.|.....|.   ++|++++||.|++|++.|....++.
T Consensus         4 ~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~~   56 (62)
T 1vd4_A            4 TDERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESAM   56 (62)
T ss_dssp             CCSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTCS
T ss_pred             hHHHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccCcccc
Confidence            4543333344568888888888877776   7899999999999999998776554

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.67  E-value=1.2e-08  Score=58.75  Aligned_cols=35  Identities=17%  Similarity=0.433  Sum_probs=31.3

Q ss_pred             HhcCCCCeecccccccccChhhHHHHHhhcCCCCc
Q psy4576         333 THTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETS  367 (400)
Q Consensus       333 ~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~  367 (400)
                      +|++++||.|.+|++.|...+.|..|+++|++++|
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            1 GSSGSSGYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCCCCSEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCCCCeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            36788999999999999999999999999998764

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=7.6e-09  Score=63.57  Aligned_cols=40  Identities=25%  Similarity=0.463  Sum_probs=36.7

Q ss_pred             HHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       358 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      +.++|.++++|.|++|++.|.....|..|+++|++++|+.
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (45)
T 2epu_A            3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGP   42 (45)
T ss_dssp             CCCCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCC
T ss_pred             CCCCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCC
Confidence            4567999999999999999999999999999999998874

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=8.6e-09  Score=63.66  Aligned_cols=38  Identities=32%  Similarity=0.365  Sum_probs=30.8

Q ss_pred             CCCCCcccccccccCCHHHHHHHHHHhcCCCCeecccc
Q psy4576         308 QGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEIC  345 (400)
Q Consensus       308 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  345 (400)
                      ..++|.|+.|++.|.....|..|+++|++++||.|++|
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            9 GEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             TCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            34456888888888888888888888888888888877

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.66  E-value=1.4e-08  Score=58.46  Aligned_cols=35  Identities=31%  Similarity=0.600  Sum_probs=31.8

Q ss_pred             HhcCCCCeecccccccccChhhHHHHHhhcCCCCc
Q psy4576         333 THTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETS  367 (400)
Q Consensus       333 ~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~  367 (400)
                      +|++++||.|.+|++.|...+.|..|+++|++++|
T Consensus         1 ~H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            1 GSSGKRPFVCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CCSCCSCEECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            37889999999999999999999999999998864

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.65  E-value=1.7e-08  Score=59.78  Aligned_cols=37  Identities=22%  Similarity=0.353  Sum_probs=33.8

Q ss_pred             cCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCCC
Q psy4576         362 HTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPPK  398 (400)
Q Consensus       362 h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~~  398 (400)
                      |++++||.|++|++.|...+.|..|+++|.+++|+..
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            5788999999999999999999999999999998864

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.64  E-value=2e-08  Score=60.95  Aligned_cols=38  Identities=24%  Similarity=0.427  Sum_probs=35.4

Q ss_pred             hhcCCCCcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         360 SCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       360 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      ++|+++++|.|+.|++.|.....|..|+++|++++|+.
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   40 (43)
T 2yrm_A            3 SGSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGP   40 (43)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSS
T ss_pred             cCcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCcc
Confidence            56899999999999999999999999999999998864

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.63  E-value=1.7e-08  Score=57.34  Aligned_cols=31  Identities=16%  Similarity=0.340  Sum_probs=17.8

Q ss_pred             CeecccccccccChhhHHHHHhhcCCCCccc
Q psy4576         339 PHCCEICGRSYSTAAYLKVHMSCHTGETSHT  369 (400)
Q Consensus       339 ~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~  369 (400)
                      ||.|++|++.|...+.|..|+++|+++++|.
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             cccCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            4555555555555555555555555555553

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.60  E-value=2.5e-09  Score=73.78  Aligned_cols=66  Identities=26%  Similarity=0.365  Sum_probs=52.5

Q ss_pred             hHHHHHhhhcCCCCCcccccccccCCHHHHHHHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCC
Q psy4576         298 ALTEHHQREHQGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGET  366 (400)
Q Consensus       298 ~l~~H~~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~  366 (400)
                      .|..|+...-..+++.|+.|++.|. ...|..|+ .|.+++||.|+.|++.|. ...|..|+++|.+++
T Consensus         4 ~L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~C~~~~~-~~~l~~H~~~c~~~~   69 (75)
T 2d9k_A            4 GSSGHEETECPLRLAVCQHCDLELS-ILKLKEHE-DYCGARTELCGNCGRNVL-VKDLKTHPEVCGREG   69 (75)
T ss_dssp             CCSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHH-HHHHHCEEECSSSCCEEE-TTGGGTHHHHBTTBS
T ss_pred             HHHhhCcccCCCcccCCcccChHhh-HHHHHHHH-hHcCCCceEcccCCCcCc-HHHHHHHHHHccCCc
Confidence            4556653333445559999999994 88999999 899999999999999887 589999999988764

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.57  E-value=3.5e-08  Score=57.66  Aligned_cols=30  Identities=23%  Similarity=0.314  Sum_probs=15.4

Q ss_pred             cCCCCeeccc--ccccccChhhHHHHHhhcCC
Q psy4576         335 TGLKPHCCEI--CGRSYSTAAYLKVHMSCHTG  364 (400)
Q Consensus       335 ~~~~~~~C~~--C~~~f~~~~~L~~H~~~h~~  364 (400)
                      ++++||+|+.  |+++|...+.|.+|+++|++
T Consensus         5 ~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg   36 (38)
T 2eln_A            5 SSGILLKCPTDGCDYSTPDKYKLQAHLKVHTA   36 (38)
T ss_dssp             SCCCCEECSSSSCCCEESCHHHHHHHHHHHSC
T ss_pred             CCCCCCCCCCCCCCCccCCHHHHHHHHHhcCC
Confidence            4445555543  55555555555555555544

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.52  E-value=3.9e-08  Score=57.44  Aligned_cols=33  Identities=15%  Similarity=0.226  Sum_probs=20.0

Q ss_pred             hhcCCCCcccCCCCccccCCchHHHHH-HhhhCC
Q psy4576         360 SCHTGETSHTCHLCPQKFRQRSSYTLH-YKTHHP  392 (400)
Q Consensus       360 ~~h~~~~~~~C~~C~~~f~~~~~l~~H-~~~hh~  392 (400)
                      ++|++++||+|+.|++.|...+.|..| ++.|.+
T Consensus         2 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~   35 (37)
T 2elm_A            2 SSGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSN   35 (37)
T ss_dssp             CSSSSSCEEECSSSSCEEECHHHHHHHHHHHTCC
T ss_pred             CccCCCcCeECCCCCcccCCHHHHHHHHHHHccC
Confidence            345666666666666666666666666 555543

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.51  E-value=4.7e-08  Score=57.40  Aligned_cols=34  Identities=26%  Similarity=0.465  Sum_probs=18.2

Q ss_pred             cCCCCeecc--cccccccChhhHHHHHhhcCCCCcc
Q psy4576         335 TGLKPHCCE--ICGRSYSTAAYLKVHMSCHTGETSH  368 (400)
Q Consensus       335 ~~~~~~~C~--~C~~~f~~~~~L~~H~~~h~~~~~~  368 (400)
                      ++++||.|.  .|++.|...+.|..|+++|+++++|
T Consensus         2 ~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            2 SDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             TTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            445555555  3555555555555555555555544

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.51  E-value=6.4e-08  Score=56.54  Aligned_cols=33  Identities=15%  Similarity=0.223  Sum_probs=30.1

Q ss_pred             hcCCCCcccCCC--CccccCCchHHHHHHhhhCCC
Q psy4576         361 CHTGETSHTCHL--CPQKFRQRSSYTLHYKTHHPG  393 (400)
Q Consensus       361 ~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~hh~~  393 (400)
                      .+++++||+|+.  |+++|..++.|.+|+++|.+.
T Consensus         3 ~~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            3 SGSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             CSSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            467899999986  999999999999999999864

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.51  E-value=5.8e-08  Score=56.19  Aligned_cols=31  Identities=13%  Similarity=0.338  Sum_probs=17.1

Q ss_pred             cCCCCcccCCCCccccCCchHHHHHHhhhCC
Q psy4576         362 HTGETSHTCHLCPQKFRQRSSYTLHYKTHHP  392 (400)
Q Consensus       362 h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~  392 (400)
                      |.+++||.|++|++.|.....|..|+++|++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elt_A            4 GSSGKPYKCPQCSYASAIKANLNVHLRKHTG   34 (36)
T ss_dssp             SCCCCSEECSSSSCEESSHHHHHHHHHHHTC
T ss_pred             CCCCCCCCCCCCCcccCCHHHHHHHHHHccC
Confidence            4455555555555555555555555555544

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.51  E-value=6.3e-08  Score=56.07  Aligned_cols=31  Identities=23%  Similarity=0.475  Sum_probs=16.8

Q ss_pred             cCCCCcccCCCCccccCCchHHHHHHhhhCC
Q psy4576         362 HTGETSHTCHLCPQKFRQRSSYTLHYKTHHP  392 (400)
Q Consensus       362 h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~  392 (400)
                      |.+++||+|++|++.|.....|..|+++|++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elq_A            4 GSSGKPFKCSLCEYATRSKSNLKAHMNRHST   34 (36)
T ss_dssp             SCCCCSEECSSSSCEESCHHHHHHHHHHSST
T ss_pred             CCCCCCccCCCCCchhCCHHHHHHHHHHhcc
Confidence            4455555555555555555555555555544

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.50  E-value=7e-08  Score=55.83  Aligned_cols=34  Identities=35%  Similarity=0.547  Sum_probs=31.5

Q ss_pred             HhcCCCCeecccccccccChhhHHHHHhhcCCCC
Q psy4576         333 THTGLKPHCCEICGRSYSTAAYLKVHMSCHTGET  366 (400)
Q Consensus       333 ~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~  366 (400)
                      +|.+++||.|.+|++.|.....|..|+++|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHccCCC
Confidence            4788999999999999999999999999998864

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.50  E-value=6.4e-08  Score=56.03  Aligned_cols=30  Identities=23%  Similarity=0.485  Sum_probs=14.4

Q ss_pred             cCCCCcccCCCCccccCCchHHHHHHhhhC
Q psy4576         362 HTGETSHTCHLCPQKFRQRSSYTLHYKTHH  391 (400)
Q Consensus       362 h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh  391 (400)
                      |++++||.|++|++.|...+.|..|+++|.
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elv_A            4 GSSGLLYDCHICERKFKNELDRDRHMLVHG   33 (36)
T ss_dssp             SCCCCCEECSSSCCEESSHHHHHHHHTTTS
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHHhc
Confidence            344444444444444444444444444443

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.50  E-value=6.9e-08  Score=55.89  Aligned_cols=34  Identities=29%  Similarity=0.541  Sum_probs=30.4

Q ss_pred             HhcCCCCeecccccccccChhhHHHHHhhcCCCC
Q psy4576         333 THTGLKPHCCEICGRSYSTAAYLKVHMSCHTGET  366 (400)
Q Consensus       333 ~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~  366 (400)
                      .|.+++||+|++|++.|...+.|..|+++|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK   36 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHHHHSSTTC
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHHHHhccCC
Confidence            4788899999999999999999999999998764

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.49  E-value=5.4e-08  Score=55.95  Aligned_cols=32  Identities=22%  Similarity=0.407  Sum_probs=25.7

Q ss_pred             hcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCC
Q psy4576         334 HTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHL  372 (400)
Q Consensus       334 h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~  372 (400)
                      +.+++||.|+.|+++|.+.+.|.+|+       ||.|..
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~-------py~C~~   34 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQ-------AYYCSH   34 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHH-------HHTSTT
T ss_pred             CCCccCeECCCCCCccCCHhHccCcC-------CeECcC
Confidence            45788888888888888888888887       677754

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.49  E-value=5.3e-08  Score=56.80  Aligned_cols=32  Identities=19%  Similarity=0.322  Sum_probs=18.9

Q ss_pred             hcCCCCcccCCCCccccCCc-hHHHHHHhhhCC
Q psy4576         361 CHTGETSHTCHLCPQKFRQR-SSYTLHYKTHHP  392 (400)
Q Consensus       361 ~h~~~~~~~C~~C~~~f~~~-~~l~~H~~~hh~  392 (400)
                      +|.+++||.|++|++.|... +.|..|+++|.+
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~   35 (37)
T 2elp_A            3 SGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEG   35 (37)
T ss_dssp             SCCCCCCEECSSSSCEECSSCHHHHHHHHHHHT
T ss_pred             CCCCCCCeECCCCChhhccCHHHHHHHHHhcCC
Confidence            45555666666666666665 566666665544

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.48  E-value=6.8e-08  Score=55.93  Aligned_cols=34  Identities=21%  Similarity=0.277  Sum_probs=31.4

Q ss_pred             HhcCCCCeecccccccccChhhHHHHHhhcCCCC
Q psy4576         333 THTGLKPHCCEICGRSYSTAAYLKVHMSCHTGET  366 (400)
Q Consensus       333 ~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~  366 (400)
                      .|++++||.|.+|++.|...+.|..|+++|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHMLVHGDKW   36 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHTTTSTTC
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHhcCCC
Confidence            5788999999999999999999999999998764

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.47  E-value=3.3e-08  Score=57.76  Aligned_cols=34  Identities=24%  Similarity=0.279  Sum_probs=30.5

Q ss_pred             HHhcCCCCeecccccccccChhhHHHH-HhhcCCC
Q psy4576         332 NTHTGLKPHCCEICGRSYSTAAYLKVH-MSCHTGE  365 (400)
Q Consensus       332 ~~h~~~~~~~C~~C~~~f~~~~~L~~H-~~~h~~~  365 (400)
                      ++|++++||+|+.|++.|...+.|..| +++|+++
T Consensus         2 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            2 SSGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             CSSSSSCEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             CccCCCcCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            468899999999999999999999999 8888865

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.46  E-value=4.6e-08  Score=57.07  Aligned_cols=34  Identities=18%  Similarity=0.344  Sum_probs=30.3

Q ss_pred             HhcCCCCeecccccccccCh-hhHHHHHhhcCCCC
Q psy4576         333 THTGLKPHCCEICGRSYSTA-AYLKVHMSCHTGET  366 (400)
Q Consensus       333 ~h~~~~~~~C~~C~~~f~~~-~~L~~H~~~h~~~~  366 (400)
                      +|++++||.|+.|++.|... +.|..|+++|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            3 SGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             SCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTCC
T ss_pred             CCCCCCCeECCCCChhhccCHHHHHHHHHhcCCCC
Confidence            57888999999999999998 99999999998764

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.45  E-value=1.5e-07  Score=61.77  Aligned_cols=38  Identities=18%  Similarity=0.287  Sum_probs=33.6

Q ss_pred             hcCCCCcccCCC--CccccCCchHHHHHH-hhhCCCCCCCC
Q psy4576         361 CHTGETSHTCHL--CPQKFRQRSSYTLHY-KTHHPGVIPPK  398 (400)
Q Consensus       361 ~h~~~~~~~C~~--C~~~f~~~~~l~~H~-~~hh~~~~~~~  398 (400)
                      ..++++||+|+.  |+++|...++|..|+ ++|.+++|+.-
T Consensus        21 ~~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~   61 (73)
T 1x3c_A           21 RYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFS   61 (73)
T ss_dssp             SSCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCC
T ss_pred             cccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccc
Confidence            357899999976  999999999999998 68999999864

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.45  E-value=7.7e-08  Score=59.82  Aligned_cols=40  Identities=23%  Similarity=0.331  Sum_probs=36.8

Q ss_pred             HHhhcCCCCcccCC--CCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         358 HMSCHTGETSHTCH--LCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       358 H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      |.++|+++++|+|.  .|++.|.....|..|+++|.+++|+.
T Consensus         3 ~~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~   44 (48)
T 2ent_A            3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSG   44 (48)
T ss_dssp             CCCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCS
T ss_pred             CCCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCC
Confidence            56789999999998  89999999999999999999998864

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.45  E-value=9.1e-08  Score=56.15  Aligned_cols=36  Identities=17%  Similarity=0.340  Sum_probs=33.1

Q ss_pred             cCCCCcccCC--CCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         362 HTGETSHTCH--LCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       362 h~~~~~~~C~--~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      |++++||.|+  .|++.|...+.|..|+++|.+++|+.
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~   38 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKFG   38 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTTC
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCCC
Confidence            6789999999  59999999999999999999998874

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.45  E-value=1e-07  Score=55.13  Aligned_cols=31  Identities=23%  Similarity=0.584  Sum_probs=16.5

Q ss_pred             cCCCCcccCCCCccccCCchHHHHHHhhhCC
Q psy4576         362 HTGETSHTCHLCPQKFRQRSSYTLHYKTHHP  392 (400)
Q Consensus       362 h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~  392 (400)
                      |.++++|.|++|++.|.....|..|+++|.+
T Consensus         4 h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elr_A            4 GSSGKTHLCDMCGKKFKSKGTLKSHKLLHTA   34 (36)
T ss_dssp             CCCCSSCBCTTTCCBCSSHHHHHHHHHHHSS
T ss_pred             CCCCCCeecCcCCCCcCchHHHHHHHHHhcC
Confidence            4445555555555555555555555555544

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.44  E-value=1.6e-07  Score=53.19  Aligned_cols=32  Identities=19%  Similarity=0.338  Sum_probs=30.0

Q ss_pred             CcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         366 TSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       366 ~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      +||.|++|++.|...+.|..|+++|.+++|+.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            58999999999999999999999999999874

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.44  E-value=1.3e-07  Score=54.59  Aligned_cols=34  Identities=29%  Similarity=0.644  Sum_probs=31.4

Q ss_pred             HhcCCCCeecccccccccChhhHHHHHhhcCCCC
Q psy4576         333 THTGLKPHCCEICGRSYSTAAYLKVHMSCHTGET  366 (400)
Q Consensus       333 ~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~  366 (400)
                      .|.+++||.|++|++.|.....|..|+++|++++
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSCC
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHhcCCC
Confidence            4788999999999999999999999999999874

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.44  E-value=1.3e-07  Score=54.74  Aligned_cols=31  Identities=23%  Similarity=0.498  Sum_probs=15.0

Q ss_pred             cCCCCcccCCCCccccCCchHHHHHHhhhCC
Q psy4576         362 HTGETSHTCHLCPQKFRQRSSYTLHYKTHHP  392 (400)
Q Consensus       362 h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~  392 (400)
                      |.+++||.|++|++.|.....|..|+++|++
T Consensus         4 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2els_A            4 GSSGKIFTCEYCNKVFKFKHSLQAHLRIHTN   34 (36)
T ss_dssp             TSCCCCEECTTTCCEESSHHHHHHHHHHHCC
T ss_pred             CCCCCCEECCCCCceeCCHHHHHHHHHHhCC
Confidence            3344445555555555555555555544443

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.41  E-value=4e-09  Score=75.11  Aligned_cols=53  Identities=19%  Similarity=0.223  Sum_probs=45.2

Q ss_pred             CCCCCcccccccccCCHHHHHHHHHHhcCCCCeecccccccccChhhHHHHHhhcCC
Q psy4576         308 QGKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTG  364 (400)
Q Consensus       308 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~  364 (400)
                      ..++|.|+.|++.|.....|..|+++|++++||+|..|.    ....|..|.+.|.+
T Consensus        22 ~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~----~~~~~~~~~~~~~~   74 (88)
T 1x6f_A           22 QNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQE----RRKQLLSKQKYADG   74 (88)
T ss_dssp             CCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCS----CCCCCCCCCCCCCC
T ss_pred             CCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhh----hHHHHHhhhccccc
Confidence            345569999999999999999999999999999998765    45667788888877

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.41  E-value=1.8e-07  Score=54.04  Aligned_cols=34  Identities=26%  Similarity=0.503  Sum_probs=31.2

Q ss_pred             HhcCCCCeecccccccccChhhHHHHHhhcCCCC
Q psy4576         333 THTGLKPHCCEICGRSYSTAAYLKVHMSCHTGET  366 (400)
Q Consensus       333 ~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~  366 (400)
                      .|.+++||.|+.|++.|.....|..|+++|++++
T Consensus         3 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A            3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             TTSCCCCEECTTTCCEESSHHHHHHHHHHHCCCC
T ss_pred             CCCCCCCEECCCCCceeCCHHHHHHHHHHhCCCC
Confidence            4678899999999999999999999999998864

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.40  E-value=1.4e-07  Score=58.72  Aligned_cols=32  Identities=34%  Similarity=0.690  Sum_probs=18.7

Q ss_pred             hcCCCCeecccccccccChhhHHHHHh-hcCCC
Q psy4576         334 HTGLKPHCCEICGRSYSTAAYLKVHMS-CHTGE  365 (400)
Q Consensus       334 h~~~~~~~C~~C~~~f~~~~~L~~H~~-~h~~~  365 (400)
                      |++++||.|.+|++.|.....|..|++ +|+++
T Consensus         2 Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e   34 (48)
T 3iuf_A            2 EDRDKPYACDICGKRYKNRPGLSYHYAHSHLAE   34 (48)
T ss_dssp             CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC-
T ss_pred             CCCCcCEECCCcCcccCCHHHHHHHhhhhcCCC
Confidence            555566666666666666666666665 55554

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.39  E-value=2.1e-08  Score=56.44  Aligned_cols=31  Identities=13%  Similarity=0.255  Sum_probs=21.5

Q ss_pred             CCeecccccccccChhhHHHHHhhcCCCCcc
Q psy4576         338 KPHCCEICGRSYSTAAYLKVHMSCHTGETSH  368 (400)
Q Consensus       338 ~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~  368 (400)
                      +||.|+.|++.|...+.|..|+++|++++||
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            3667777777777777777777777776665

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.38  E-value=5.8e-08  Score=60.14  Aligned_cols=38  Identities=18%  Similarity=0.328  Sum_probs=27.1

Q ss_pred             HHHHhhcCCCCcccCC--CCccccCCchHHHHHHhhhCCC
Q psy4576         356 KVHMSCHTGETSHTCH--LCPQKFRQRSSYTLHYKTHHPG  393 (400)
Q Consensus       356 ~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~hh~~  393 (400)
                      ..|+..|++++||.|+  .|++.|...+.|..|+++|.++
T Consensus         7 ~~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~e   46 (47)
T 1ncs_A            7 IDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             GGGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             HHHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCC
Confidence            3455567777777774  5777777777777777777664

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.38  E-value=1.5e-07  Score=58.52  Aligned_cols=35  Identities=17%  Similarity=0.545  Sum_probs=29.4

Q ss_pred             hcCCCCcccCCCCccccCCchHHHHHHh-hhCCCCC
Q psy4576         361 CHTGETSHTCHLCPQKFRQRSSYTLHYK-THHPGVI  395 (400)
Q Consensus       361 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~hh~~~~  395 (400)
                      +|++++||.|.+|++.|.....|..|++ +|.++..
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~~   36 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEEE   36 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC---
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCCC
Confidence            4889999999999999999999999999 7776644

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.31  E-value=2.9e-07  Score=53.59  Aligned_cols=31  Identities=39%  Similarity=0.812  Sum_probs=14.8

Q ss_pred             hcCCCCeeccc--ccccccChhhHHHHHhhcCC
Q psy4576         334 HTGLKPHCCEI--CGRSYSTAAYLKVHMSCHTG  364 (400)
Q Consensus       334 h~~~~~~~C~~--C~~~f~~~~~L~~H~~~h~~  364 (400)
                      |++++||.|.+  |++.|...+.|..|+++|++
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~   35 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTG   35 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCC
Confidence            33444455542  55555555555555444444

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.31  E-value=5.1e-07  Score=59.86  Aligned_cols=40  Identities=18%  Similarity=0.266  Sum_probs=29.4

Q ss_pred             hcCCCCeecccccccccChhhHHHHHhhcCCCCcccCCCCc
Q psy4576         334 HTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCP  374 (400)
Q Consensus       334 h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~  374 (400)
                      +.+++||+|..|++.|.....|..|+++|+++. ..+.++.
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~-~~~~~~~   47 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQHGVTS-LQLGYID   47 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTS-CCCCSCC
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhhhCCCc-ccccccc
Confidence            556788888888888888888888888887764 3454444

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.29  E-value=5.1e-07  Score=49.47  Aligned_cols=28  Identities=25%  Similarity=0.445  Sum_probs=19.4

Q ss_pred             cccCCCCccccCCchHHHHHHhhhCCCC
Q psy4576         367 SHTCHLCPQKFRQRSSYTLHYKTHHPGV  394 (400)
Q Consensus       367 ~~~C~~C~~~f~~~~~l~~H~~~hh~~~  394 (400)
                      +|.|++|++.|...+.|..|+++|++++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~h~~~~   29 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CccCCCCCCccCCHHHHHHHHHHHccCC
Confidence            5677777777777777777777776654

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.27  E-value=5.5e-07  Score=49.32  Aligned_cols=27  Identities=37%  Similarity=0.727  Sum_probs=12.7

Q ss_pred             CCeecccccccccChhhHHHHHhhcCC
Q psy4576         338 KPHCCEICGRSYSTAAYLKVHMSCHTG  364 (400)
Q Consensus       338 ~~~~C~~C~~~f~~~~~L~~H~~~h~~  364 (400)
                      +||.|..|++.|.....|..|+++|++
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~~h~~   28 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLETHDT   28 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHTTCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHHhcc
Confidence            344444444444444444444444443

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.26  E-value=5.1e-08  Score=60.42  Aligned_cols=39  Identities=13%  Similarity=0.282  Sum_probs=33.2

Q ss_pred             HHHHHHhcCCCCeecc--cccccccChhhHHHHHhhcCCCC
Q psy4576         328 ANHMNTHTGLKPHCCE--ICGRSYSTAAYLKVHMSCHTGET  366 (400)
Q Consensus       328 ~~H~~~h~~~~~~~C~--~C~~~f~~~~~L~~H~~~h~~~~  366 (400)
                      ..|+..|++++||.|+  .|+++|...+.|..|+++|++++
T Consensus         7 ~~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A            7 IDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             GGGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             HHHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            3455568999999995  79999999999999999998864

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.26  E-value=4.8e-07  Score=49.21  Aligned_cols=26  Identities=19%  Similarity=0.510  Sum_probs=12.5

Q ss_pred             CeecccccccccChhhHHHHHhhcCC
Q psy4576         339 PHCCEICGRSYSTAAYLKVHMSCHTG  364 (400)
Q Consensus       339 ~~~C~~C~~~f~~~~~L~~H~~~h~~  364 (400)
                      ||.|+.|++.|...+.|..|+++|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHILLHEN   27 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHTGGGS
T ss_pred             CccCCCCCchhCCHHHHHHHHHHhcC
Confidence            44444444444444444444444443

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.24  E-value=4.9e-07  Score=52.59  Aligned_cols=34  Identities=21%  Similarity=0.422  Sum_probs=30.4

Q ss_pred             hcCCCCcccCCC--CccccCCchHHHHHHhhhCCCC
Q psy4576         361 CHTGETSHTCHL--CPQKFRQRSSYTLHYKTHHPGV  394 (400)
Q Consensus       361 ~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~hh~~~  394 (400)
                      .|++++||.|.+  |++.|...+.|..|+++|.+++
T Consensus         2 ~~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            2 DPGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             CSSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            478899999995  9999999999999999998753

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.24  E-value=6.5e-07  Score=49.00  Aligned_cols=30  Identities=23%  Similarity=0.444  Sum_probs=27.3

Q ss_pred             CCcccCCCCccccCCchHHHHHHhhhCCCC
Q psy4576         365 ETSHTCHLCPQKFRQRSSYTLHYKTHHPGV  394 (400)
Q Consensus       365 ~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~  394 (400)
                      ++||.|+.|++.|.....|..|+++|++++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   30 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHDTDK   30 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTCCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhccCC
Confidence            478999999999999999999999998753

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.24  E-value=6.4e-07  Score=48.64  Aligned_cols=26  Identities=27%  Similarity=0.751  Sum_probs=12.1

Q ss_pred             cccCCCCccccCCchHHHHHHhhhCC
Q psy4576         367 SHTCHLCPQKFRQRSSYTLHYKTHHP  392 (400)
Q Consensus       367 ~~~C~~C~~~f~~~~~l~~H~~~hh~  392 (400)
                      ||.|++|++.|.....|..|+++|++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~   27 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRSHTN   27 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHHSC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHhcC
Confidence            34444444444444444444444443

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.21  E-value=6.7e-07  Score=48.17  Aligned_cols=25  Identities=24%  Similarity=0.740  Sum_probs=12.5

Q ss_pred             CcccCCCCccccCCchHHHHHHhhh
Q psy4576         366 TSHTCHLCPQKFRQRSSYTLHYKTH  390 (400)
Q Consensus       366 ~~~~C~~C~~~f~~~~~l~~H~~~h  390 (400)
                      +||.|++|++.|.....|..|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h   26 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYRVH   26 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHTTS
T ss_pred             cCccCCCCCcccCCHHHHHHHHHhc
Confidence            3455555555555555555555444

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.21  E-value=1.1e-06  Score=58.30  Aligned_cols=34  Identities=18%  Similarity=0.282  Sum_probs=19.8

Q ss_pred             cCCCCcccCCCCccccCCchHHHHHHhhhCCCCC
Q psy4576         362 HTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGVI  395 (400)
Q Consensus       362 h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~  395 (400)
                      +.+++||+|.+|++.|.....|..|+++|+++..
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~~   41 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQHGVTSL   41 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTSC
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhhhCCCcc
Confidence            4455566666666666666666666666655443

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.21  E-value=7.2e-07  Score=48.46  Aligned_cols=29  Identities=28%  Similarity=0.548  Sum_probs=26.5

Q ss_pred             CcccCCCCccccCCchHHHHHHhhhCCCC
Q psy4576         366 TSHTCHLCPQKFRQRSSYTLHYKTHHPGV  394 (400)
Q Consensus       366 ~~~~C~~C~~~f~~~~~l~~H~~~hh~~~  394 (400)
                      +||.|+.|++.|...+.|..|+++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENKK   29 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSCC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCCC
Confidence            58999999999999999999999998753

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.21  E-value=7.9e-07  Score=47.87  Aligned_cols=28  Identities=32%  Similarity=0.883  Sum_probs=24.4

Q ss_pred             CCCeecccccccccChhhHHHHHhhcCC
Q psy4576         337 LKPHCCEICGRSYSTAAYLKVHMSCHTG  364 (400)
Q Consensus       337 ~~~~~C~~C~~~f~~~~~L~~H~~~h~~  364 (400)
                      ++||.|+.|++.|...+.|..|+++|++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcCC
Confidence            4689999999999999999999988864

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.20  E-value=9.4e-07  Score=47.94  Aligned_cols=29  Identities=34%  Similarity=0.741  Sum_probs=26.8

Q ss_pred             CCeecccccccccChhhHHHHHhhcCCCC
Q psy4576         338 KPHCCEICGRSYSTAAYLKVHMSCHTGET  366 (400)
Q Consensus       338 ~~~~C~~C~~~f~~~~~L~~H~~~h~~~~  366 (400)
                      +||.|++|++.|...+.|..|+++|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   29 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCCC
Confidence            58999999999999999999999998864

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.19  E-value=7.1e-07  Score=47.68  Aligned_cols=25  Identities=28%  Similarity=0.615  Sum_probs=12.6

Q ss_pred             CCeecccccccccChhhHHHHHhhc
Q psy4576         338 KPHCCEICGRSYSTAAYLKVHMSCH  362 (400)
Q Consensus       338 ~~~~C~~C~~~f~~~~~L~~H~~~h  362 (400)
                      +||.|+.|++.|...+.|..|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHTTC
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHhc
Confidence            3455555555555555555555444

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.19  E-value=6.6e-07  Score=48.55  Aligned_cols=27  Identities=41%  Similarity=0.898  Sum_probs=13.9

Q ss_pred             CeecccccccccChhhHHHHHhhcCCC
Q psy4576         339 PHCCEICGRSYSTAAYLKVHMSCHTGE  365 (400)
Q Consensus       339 ~~~C~~C~~~f~~~~~L~~H~~~h~~~  365 (400)
                      ||.|..|++.|.....|..|+++|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLRIHSGE   28 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHHHHHTC
T ss_pred             CccCCCCCCccCChhHHHHHHHHhcCC
Confidence            455555555555555555555555443

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.19  E-value=8e-07  Score=47.41  Aligned_cols=25  Identities=44%  Similarity=0.826  Sum_probs=12.5

Q ss_pred             CcccCCCCccccCCchHHHHHHhhh
Q psy4576         366 TSHTCHLCPQKFRQRSSYTLHYKTH  390 (400)
Q Consensus       366 ~~~~C~~C~~~f~~~~~l~~H~~~h  390 (400)
                      +||.|+.||+.|...+.|..|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHC
T ss_pred             cCccCCCcChhhCCHHHHHHHHHHc
Confidence            3455555555555555555555443

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.18  E-value=9.1e-07  Score=47.18  Aligned_cols=27  Identities=22%  Similarity=0.524  Sum_probs=23.0

Q ss_pred             CCCeecccccccccChhhHHHHHhhcC
Q psy4576         337 LKPHCCEICGRSYSTAAYLKVHMSCHT  363 (400)
Q Consensus       337 ~~~~~C~~C~~~f~~~~~L~~H~~~h~  363 (400)
                      ++||.|+.|++.|...+.|..|+++|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            468899999999999999999988874

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.18  E-value=8.8e-08  Score=53.81  Aligned_cols=31  Identities=26%  Similarity=0.477  Sum_probs=29.1

Q ss_pred             CcccCCCCccccCCchHHHHHHhhhCCCCCC
Q psy4576         366 TSHTCHLCPQKFRQRSSYTLHYKTHHPGVIP  396 (400)
Q Consensus       366 ~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~  396 (400)
                      +||.|++|++.|...+.|..|+++|.+++|+
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            5899999999999999999999999998876

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.17  E-value=6.3e-07  Score=47.89  Aligned_cols=27  Identities=22%  Similarity=0.417  Sum_probs=24.8

Q ss_pred             CCcccCCCCccccCCchHHHHHHhhhC
Q psy4576         365 ETSHTCHLCPQKFRQRSSYTLHYKTHH  391 (400)
Q Consensus       365 ~~~~~C~~C~~~f~~~~~l~~H~~~hh  391 (400)
                      ++||.|+.|++.|...+.|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            478999999999999999999999874

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.17  E-value=1.1e-06  Score=48.58  Aligned_cols=27  Identities=37%  Similarity=0.845  Sum_probs=13.6

Q ss_pred             Ceecc--cccccccChhhHHHHHhhcCCC
Q psy4576         339 PHCCE--ICGRSYSTAAYLKVHMSCHTGE  365 (400)
Q Consensus       339 ~~~C~--~C~~~f~~~~~L~~H~~~h~~~  365 (400)
                      ||.|+  .|+++|...+.|..|+++|+++
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~~H~~~   30 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHHHhcCC
Confidence            45554  4555555555555555555443

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.17  E-value=8.7e-07  Score=48.47  Aligned_cols=29  Identities=21%  Similarity=0.410  Sum_probs=22.9

Q ss_pred             CCeecccccccccChhhHHHHHhhcCCCC
Q psy4576         338 KPHCCEICGRSYSTAAYLKVHMSCHTGET  366 (400)
Q Consensus       338 ~~~~C~~C~~~f~~~~~L~~H~~~h~~~~  366 (400)
                      +||.|+.|++.|...+.|..|+++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~   29 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCC
Confidence            46788888888888888888888887765

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.17  E-value=1.2e-06  Score=48.80  Aligned_cols=26  Identities=23%  Similarity=0.497  Sum_probs=12.2

Q ss_pred             cccCC--CCccccCCchHHHHHHhhhCC
Q psy4576         367 SHTCH--LCPQKFRQRSSYTLHYKTHHP  392 (400)
Q Consensus       367 ~~~C~--~C~~~f~~~~~l~~H~~~hh~  392 (400)
                      ||.|+  .|++.|...+.|..|+++|.+
T Consensus         3 ~~~C~~~~C~k~f~~~~~L~~H~~~H~~   30 (32)
T 1zfd_A            3 PYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             SBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             CCcCcCCCCCCccCCHHHHHHHHHHccC
Confidence            44444  444444444444444444443

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.43  E-value=2.9e-07  Score=50.17  Aligned_cols=26  Identities=38%  Similarity=0.874  Sum_probs=11.8

Q ss_pred             CeecccccccccChhhHHHHHhhcCC
Q psy4576         339 PHCCEICGRSYSTAAYLKVHMSCHTG  364 (400)
Q Consensus       339 ~~~C~~C~~~f~~~~~L~~H~~~h~~  364 (400)
                      ||.|+.|++.|...+.|..|+++|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQHTG   27 (29)
Confidence            34444444444444444444444443

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.13  E-value=8.9e-07  Score=47.97  Aligned_cols=26  Identities=35%  Similarity=0.657  Sum_probs=12.8

Q ss_pred             cccCCCCccccCCchHHHHHHhhhCC
Q psy4576         367 SHTCHLCPQKFRQRSSYTLHYKTHHP  392 (400)
Q Consensus       367 ~~~C~~C~~~f~~~~~l~~H~~~hh~  392 (400)
                      ||.|+.|++.|.....|..|+++|++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~   27 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLKIHIA   27 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHHHHHS
T ss_pred             CCcCCCCCcccCCHHHHHHHHHHhcc
Confidence            44455555555555555555544443

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.12  E-value=1.3e-06  Score=46.44  Aligned_cols=24  Identities=29%  Similarity=0.697  Sum_probs=12.0

Q ss_pred             ccCCCCccccCCchHHHHHHhhhC
Q psy4576         368 HTCHLCPQKFRQRSSYTLHYKTHH  391 (400)
Q Consensus       368 ~~C~~C~~~f~~~~~l~~H~~~hh  391 (400)
                      |.|++|++.|.....|..|+++|+
T Consensus         2 ~~C~~C~k~f~~~~~l~~H~~~h~   25 (27)
T 1znf_A            2 YKCGLCERSFVEKSALSRHQRVHK   25 (27)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             ccCCCCCCcCCCHHHHHHHHHHcC
Confidence            445555555555555555554443

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.12  E-value=1.2e-06  Score=47.48  Aligned_cols=29  Identities=28%  Similarity=0.654  Sum_probs=26.8

Q ss_pred             CCeecccccccccChhhHHHHHhhcCCCC
Q psy4576         338 KPHCCEICGRSYSTAAYLKVHMSCHTGET  366 (400)
Q Consensus       338 ~~~~C~~C~~~f~~~~~L~~H~~~h~~~~  366 (400)
                      +||.|+.|++.|...+.|..|+++|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSCC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccCC
Confidence            58999999999999999999999998764

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.11  E-value=1.5e-06  Score=46.29  Aligned_cols=27  Identities=26%  Similarity=0.539  Sum_probs=24.1

Q ss_pred             CeecccccccccChhhHHHHHhhcCCC
Q psy4576         339 PHCCEICGRSYSTAAYLKVHMSCHTGE  365 (400)
Q Consensus       339 ~~~C~~C~~~f~~~~~L~~H~~~h~~~  365 (400)
                      ||.|..|++.|...+.|..|+++|+++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   27 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKNX   27 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC-
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCCC
Confidence            689999999999999999999999864

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.11  E-value=1.1e-06  Score=50.38  Aligned_cols=27  Identities=19%  Similarity=0.276  Sum_probs=25.1

Q ss_pred             cCCCCcccCCCCccccCCchHHHHHHh
Q psy4576         362 HTGETSHTCHLCPQKFRQRSSYTLHYK  388 (400)
Q Consensus       362 h~~~~~~~C~~C~~~f~~~~~l~~H~~  388 (400)
                      +.+++||.|+.|+++|++.+.|.+|+.
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~p   29 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHHH
T ss_pred             CCCccCeECCCCCCccCCHhHccCcCC
Confidence            568999999999999999999999983

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.11  E-value=2.2e-06  Score=47.73  Aligned_cols=30  Identities=20%  Similarity=0.456  Sum_probs=27.6

Q ss_pred             CCCeecc--cccccccChhhHHHHHhhcCCCC
Q psy4576         337 LKPHCCE--ICGRSYSTAAYLKVHMSCHTGET  366 (400)
Q Consensus       337 ~~~~~C~--~C~~~f~~~~~L~~H~~~h~~~~  366 (400)
                      ++||.|.  .|+++|...+.|..|+++|++++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~   32 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccCCC
Confidence            4799999  89999999999999999999864

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.38  E-value=3.9e-07  Score=49.98  Aligned_cols=25  Identities=20%  Similarity=0.511  Sum_probs=11.9

Q ss_pred             cccCCCCccccCCchHHHHHHhhhC
Q psy4576         367 SHTCHLCPQKFRQRSSYTLHYKTHH  391 (400)
Q Consensus       367 ~~~C~~C~~~f~~~~~l~~H~~~hh  391 (400)
                      ||.|+.|++.|.....|..|+++|+
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~h~   27 (30)
T 2lvr_A            3 PYVCIHCQRQFADPGALQRHVRIHT   27 (30)
Confidence            4444444444444444444444444

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.38  E-value=4e-07  Score=49.56  Aligned_cols=29  Identities=28%  Similarity=0.497  Sum_probs=26.3

Q ss_pred             CcccCCCCccccCCchHHHHHHhhhCCCC
Q psy4576         366 TSHTCHLCPQKFRQRSSYTLHYKTHHPGV  394 (400)
Q Consensus       366 ~~~~C~~C~~~f~~~~~l~~H~~~hh~~~  394 (400)
                      +||.|++|++.|...+.|..|+++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK   29 (29)
Confidence            47999999999999999999999998753

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.37  E-value=4.2e-07  Score=49.84  Aligned_cols=30  Identities=37%  Similarity=0.742  Sum_probs=27.3

Q ss_pred             CCCeecccccccccChhhHHHHHhhcCCCC
Q psy4576         337 LKPHCCEICGRSYSTAAYLKVHMSCHTGET  366 (400)
Q Consensus       337 ~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~  366 (400)
                      ++||.|+.|++.|...+.|..|+++|++++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~~k   30 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK   30 (30)
Confidence            378999999999999999999999998763

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.09  E-value=1.3e-06  Score=47.26  Aligned_cols=29  Identities=17%  Similarity=0.407  Sum_probs=26.4

Q ss_pred             CcccCCCCccccCCchHHHHHHhhhCCCC
Q psy4576         366 TSHTCHLCPQKFRQRSSYTLHYKTHHPGV  394 (400)
Q Consensus       366 ~~~~C~~C~~~f~~~~~l~~H~~~hh~~~  394 (400)
                      +||.|++|++.|.....|..|+++|.+++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTCC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCCC
Confidence            47999999999999999999999998753

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.08  E-value=2.1e-06  Score=47.43  Aligned_cols=29  Identities=21%  Similarity=0.485  Sum_probs=26.4

Q ss_pred             CcccCC--CCccccCCchHHHHHHhhhCCCC
Q psy4576         366 TSHTCH--LCPQKFRQRSSYTLHYKTHHPGV  394 (400)
Q Consensus       366 ~~~~C~--~C~~~f~~~~~l~~H~~~hh~~~  394 (400)
                      +||.|+  .|++.|...+.|..|+++|.+++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCCC
Confidence            589998  99999999999999999998763

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.04  E-value=2.3e-06  Score=46.80  Aligned_cols=20  Identities=30%  Similarity=0.665  Sum_probs=9.6

Q ss_pred             cccCCCCccccCCchHHHHH
Q psy4576         367 SHTCHLCPQKFRQRSSYTLH  386 (400)
Q Consensus       367 ~~~C~~C~~~f~~~~~l~~H  386 (400)
                      ||.|+.|++.|...+.|..|
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H   21 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRH   21 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHH
T ss_pred             CcCCcccCcccCChHHHHHH
Confidence            34444444444444444444

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.24  E-value=8.3e-07  Score=46.85  Aligned_cols=24  Identities=29%  Similarity=0.600  Sum_probs=12.6

Q ss_pred             cccCCCCccccCCchHHHHHHhhh
Q psy4576         367 SHTCHLCPQKFRQRSSYTLHYKTH  390 (400)
Q Consensus       367 ~~~C~~C~~~f~~~~~l~~H~~~h  390 (400)
                      ||.|+.||+.|...+.|..|+++|
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            455555555555555555555443

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.24  E-value=8.8e-07  Score=46.77  Aligned_cols=26  Identities=35%  Similarity=0.781  Sum_probs=21.4

Q ss_pred             CCeecccccccccChhhHHHHHhhcC
Q psy4576         338 KPHCCEICGRSYSTAAYLKVHMSCHT  363 (400)
Q Consensus       338 ~~~~C~~C~~~f~~~~~L~~H~~~h~  363 (400)
                      +||.|+.|++.|...+.|..|+++|+
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            47888888888888888888888763

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.98  E-value=3.5e-06  Score=45.98  Aligned_cols=29  Identities=28%  Similarity=0.645  Sum_probs=26.3

Q ss_pred             CCeecccccccccChhhHHHH-HhhcCCCC
Q psy4576         338 KPHCCEICGRSYSTAAYLKVH-MSCHTGET  366 (400)
Q Consensus       338 ~~~~C~~C~~~f~~~~~L~~H-~~~h~~~~  366 (400)
                      +||.|+.|++.|...+.|..| +++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~   30 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGNL   30 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCCC
Confidence            589999999999999999999 78998764

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.83  E-value=9.9e-06  Score=43.65  Aligned_cols=25  Identities=36%  Similarity=0.636  Sum_probs=12.7

Q ss_pred             Ceecc--cccccccChhhHHHHHhhcC
Q psy4576         339 PHCCE--ICGRSYSTAAYLKVHMSCHT  363 (400)
Q Consensus       339 ~~~C~--~C~~~f~~~~~L~~H~~~h~  363 (400)
                      ||.|.  .|++.|...+.|..|+++|+
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            44555  55555555555555555443

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.82  E-value=2.6e-05  Score=51.29  Aligned_cols=47  Identities=23%  Similarity=0.339  Sum_probs=32.2

Q ss_pred             ccccccChhhHHHHH-hhcCCCC------cccCC--CCccccCCchHHHHHHhhhC
Q psy4576         345 CGRSYSTAAYLKVHM-SCHTGET------SHTCH--LCPQKFRQRSSYTLHYKTHH  391 (400)
Q Consensus       345 C~~~f~~~~~L~~H~-~~h~~~~------~~~C~--~C~~~f~~~~~l~~H~~~hh  391 (400)
                      |++.|.+...|..|+ +.|.+.+      +|.|.  .|++.+.....|..|++..|
T Consensus         9 C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A            9 CPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             CCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred             CCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccccC
Confidence            666666666666666 3555443      67775  67777777777888877765

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.75  E-value=1.2e-05  Score=43.24  Aligned_cols=27  Identities=30%  Similarity=0.543  Sum_probs=24.8

Q ss_pred             CcccCC--CCccccCCchHHHHHHhhhCC
Q psy4576         366 TSHTCH--LCPQKFRQRSSYTLHYKTHHP  392 (400)
Q Consensus       366 ~~~~C~--~C~~~f~~~~~l~~H~~~hh~  392 (400)
                      ++|.|+  .|++.|...+.|..|+++|.+
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            479999  999999999999999999864

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.58  E-value=0.0001  Score=48.43  Aligned_cols=48  Identities=17%  Similarity=0.389  Sum_probs=27.4

Q ss_pred             cccccccCHHHHHHhHhhcCCCCC------cccCC--CCCCccCCHHHHHHHHHhh
Q psy4576         162 YCNRTFDSKAKIQEHIISSHMHEK------LYQCD--FCGSQQRTKCRFYYHLRDK  209 (400)
Q Consensus       162 ~C~~~f~~~~~l~~H~~~~H~~~~------~~~C~--~C~~~f~~~~~l~~H~~~~  209 (400)
                      .|++.|.+...|..|+...|.+.+      +|.|.  .|++.+.....|..|++..
T Consensus         8 ~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A            8 ECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             TCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             CCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhcccc
Confidence            366666666666666655555443      45564  4665555555566665543

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=96.84  E-value=0.0042  Score=49.80  Aligned_cols=55  Identities=13%  Similarity=0.297  Sum_probs=28.1

Q ss_pred             CCeecccccccccChhhHHHHHhhcCCCCcccCCCCccccCCchHHHHHHhhhCCCC
Q psy4576         338 KPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGV  394 (400)
Q Consensus       338 ~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~  394 (400)
                      .+..|+.|+..+ ....|..|+...-..++-.|+.|+..+. ...|..|...+.++.
T Consensus       109 ~~v~C~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~-~~~l~~H~~~~~~~~  163 (170)
T 3hcs_A          109 ALMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASMA-FEDKEIHDQNCPLAL  163 (170)
T ss_dssp             SEEECTTTCCEE-EGGGHHHHHHHTCTTCEEECTTTCCEEE-GGGHHHHHTTCCC--
T ss_pred             eeeECCCCChHH-HHHHHHHHhhhhCCCCCeECCCCCCccC-HHHHHhHHHhCcChh
Confidence            345555555555 3445555555555555555666655553 334555555555443

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.57  E-value=0.0019  Score=48.94  Aligned_cols=76  Identities=17%  Similarity=0.345  Sum_probs=51.1

Q ss_pred             CCCcccccccccCCHHHHHHHH--HHhcCC-CCeecccc------cccccChhhHHHHHhhcCCCCcccCCCCccccCCc
Q psy4576         310 KKPVCTICGKMLIDKRSLANHM--NTHTGL-KPHCCEIC------GRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQR  380 (400)
Q Consensus       310 ~~~~C~~C~~~f~~~~~l~~H~--~~h~~~-~~~~C~~C------~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~  380 (400)
                      .++.|.+|+..|.+.+.+..|.  +.|... +.|.+...      ++.+....    +...+.+...|-|.+|++.|.+.
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~C~~C~~~f~s~  106 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAP----AEISDGEDRSKCCPVCNMTFSSP  106 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCS----SCCSSCCCTTTEETTTTEECSSH
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCc----cccccCCCCCeEcCCCCCEeCCH
Confidence            4468999999999999999998  455432 23333110      12222111    22345566789999999999999


Q ss_pred             hHHHHHHhh
Q psy4576         381 SSYTLHYKT  389 (400)
Q Consensus       381 ~~l~~H~~~  389 (400)
                      ..|..|+..
T Consensus       107 ~~~~~H~~g  115 (127)
T 1zu1_A          107 VVAESHYIG  115 (127)
T ss_dssp             HHHHHHHTS
T ss_pred             HHHHHHHCC
Confidence            999999853

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.29  E-value=0.00081  Score=49.90  Aligned_cols=30  Identities=27%  Similarity=0.472  Sum_probs=19.4

Q ss_pred             HhcCCCCeecccccccccChhhHHHHHhhc
Q psy4576         333 THTGLKPHCCEICGRSYSTAAYLKVHMSCH  362 (400)
Q Consensus       333 ~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h  362 (400)
                      .|+|++||.|..|++.|.+.+.|..|+++.
T Consensus        44 d~tGekpfyC~~C~K~F~~~~~L~~H~rsK   73 (124)
T 1zr9_A           44 DLPGGGLHRCLACARYFIDSTNLKTHFRSK   73 (124)
T ss_dssp             SSGGGGCSEETTTTEECSSHHHHHHHTTCH
T ss_pred             cCCCCcceEcccCcchhCCHHHHHHHHhhh
Confidence            355666666666666666666666666554

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.29  E-value=0.0031  Score=47.70  Aligned_cols=77  Identities=21%  Similarity=0.349  Sum_probs=48.4

Q ss_pred             ccccccCcccccccChhHHHHHHh-hhcCCC-Cccccccc------ccccCChHHHHHHhhhhcCCcccccCCCCccccc
Q psy4576          90 WDEERCRSCGLLSGSITQTYIHYL-ECKNRG-KLYECSLC------NESFENKKVLFRHLRGKHGMKIKLSRHKTKCVCH  161 (400)
Q Consensus        90 ~~~~~C~~C~~~f~~~~~l~~H~~-~~h~~~-~~~~C~~C------~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~C~  161 (400)
                      .+++.|.+|+..|.+...+..|+. +.|... +.|.+...      +..+....    +        .........|.|.
T Consensus        30 ~~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~----~--------~~~~~~~~~~~C~   97 (127)
T 1zu1_A           30 FSDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAP----A--------EISDGEDRSKCCP   97 (127)
T ss_dssp             BCSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCS----S--------CCSSCCCTTTEET
T ss_pred             CCCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCc----c--------ccccCCCCCeEcC
Confidence            356899999999999999999953 344322 23333211      11111100    0        0112334566899


Q ss_pred             cccccccCHHHHHHhHh
Q psy4576         162 YCNRTFDSKAKIQEHII  178 (400)
Q Consensus       162 ~C~~~f~~~~~l~~H~~  178 (400)
                      +|++.|.+...|..|+.
T Consensus        98 ~C~~~f~s~~~~~~H~~  114 (127)
T 1zu1_A           98 VCNMTFSSPVVAESHYI  114 (127)
T ss_dssp             TTTEECSSHHHHHHHHT
T ss_pred             CCCCEeCCHHHHHHHHC
Confidence            99999999999999984

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.26  E-value=0.0011  Score=49.20  Aligned_cols=31  Identities=19%  Similarity=0.455  Sum_probs=21.7

Q ss_pred             HhhcCCCCcccCCCCccccCCchHHHHHHhh
Q psy4576         359 MSCHTGETSHTCHLCPQKFRQRSSYTLHYKT  389 (400)
Q Consensus       359 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~  389 (400)
                      ...|+|+++|.|..|++.|.+...|..|+++
T Consensus        42 ded~tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           42 DPDLPGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             CSSSGGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             cccCCCCcceEcccCcchhCCHHHHHHHHhh
Confidence            3457777777777777777777777777654

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=95.98  E-value=0.0035  Score=50.25  Aligned_cols=110  Identities=15%  Similarity=0.223  Sum_probs=74.9

Q ss_pred             eecccccccccChhHHhhhHhhhcchhhHHHHhhhcCCcccc--ccccccccChhhHHHHHhhhcCCCCCcccccccccC
Q psy4576         245 YQCYYCRKTYCHKPNLTNHIQNVHLKSELEKRTAILKREFIC--DVCGKSYVRKGALTEHHQREHQGKKPVCTICGKMLI  322 (400)
Q Consensus       245 ~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~~~~C--~~C~~~f~~~~~l~~H~~~~h~~~~~~C~~C~~~f~  322 (400)
                      ..|+.|...+.....+..-.        .  ......-...|  .-|+.... ...|..|. ..=.-....|+.|+..+ 
T Consensus        54 ~~CP~Cr~~~~~~~~~~~~~--------~--~~~i~~l~v~C~n~GC~~~~~-~~~l~~H~-~~C~~~~v~C~~C~~~~-  120 (170)
T 3hcs_A           54 HKCPVDNEILLENQLFPDNF--------A--KREILSLMVKCPNEGCLHKME-LRHLEDHQ-AHCEFALMDCPQCQRPF-  120 (170)
T ss_dssp             SBCTTTCCBCCGGGCEECHH--------H--HHHHHTSEEECCSTTCCCEEE-GGGHHHHH-TTCTTSEEECTTTCCEE-
T ss_pred             CCCCCCccCcchhhhhhhHH--------H--HHHHhhcccCCCCCCCCceec-HhHHHHHH-hcCCceeeECCCCChHH-
Confidence            39999988876543221111        1  22233455678  45876654 55678886 43333445899999988 


Q ss_pred             CHHHHHHHHHHhcCCCCeecccccccccChhhHHHHHhhcCCCCcc
Q psy4576         323 DKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETSH  368 (400)
Q Consensus       323 ~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~  368 (400)
                      ....|..|+...-..++..|+.|+..+. ...|..|..++.|+.++
T Consensus       121 ~r~~l~~H~~~~C~~r~~~C~~C~~~~~-~~~l~~H~~~~~~~~~~  165 (170)
T 3hcs_A          121 QKFHINIHILKDCPRRQVSCDNCAASMA-FEDKEIHDQNCPLALEH  165 (170)
T ss_dssp             EGGGHHHHHHHTCTTCEEECTTTCCEEE-GGGHHHHHTTCCC----
T ss_pred             HHHHHHHHhhhhCCCCCeECCCCCCccC-HHHHHhHHHhCcChhhh
Confidence            6778999998777788899999999886 56799999999887654

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=95.63  E-value=0.0072  Score=33.33  Aligned_cols=27  Identities=19%  Similarity=0.440  Sum_probs=22.3

Q ss_pred             cccCCCCccccCCchHHHHHHhhhCCC
Q psy4576         367 SHTCHLCPQKFRQRSSYTLHYKTHHPG  393 (400)
Q Consensus       367 ~~~C~~C~~~f~~~~~l~~H~~~hh~~  393 (400)
                      .|.||+|.+.|.+...|..|....|..
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H~~   31 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVHDA   31 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHTSS
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhcccc
Confidence            488888888888888888888887764

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.29  E-value=0.0094  Score=35.09  Aligned_cols=22  Identities=23%  Similarity=0.543  Sum_probs=10.1

Q ss_pred             CeecccccccccChhhHHHHHh
Q psy4576         339 PHCCEICGRSYSTAAYLKVHMS  360 (400)
Q Consensus       339 ~~~C~~C~~~f~~~~~L~~H~~  360 (400)
                      +|.|+.|+..|.....|+.||+
T Consensus        12 ~~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           12 RKICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             CCCCTTTCCCCSSHHHHHHHHH
T ss_pred             ceeCCcccccccchHHHHhhhh
Confidence            3444444444444444444443

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.08  E-value=0.018  Score=33.90  Aligned_cols=30  Identities=20%  Similarity=0.396  Sum_probs=26.7

Q ss_pred             CcccCCCCccccCCchHHHHHHhhhCCCCC
Q psy4576         366 TSHTCHLCPQKFRQRSSYTLHYKTHHPGVI  395 (400)
Q Consensus       366 ~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~  395 (400)
                      .+|.|+.|+..|.....|+.||+--=|+.+
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~HmkycCp~~v   40 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCYCCPEMV   40 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHHHCTTTC
T ss_pred             CceeCCcccccccchHHHHhhhhhcCcchh
Confidence            579999999999999999999998777654

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=94.99  E-value=0.017  Score=31.80  Aligned_cols=28  Identities=25%  Similarity=0.437  Sum_probs=23.7

Q ss_pred             ccccCcccccccChhHHHHHHhhhcCCC
Q psy4576          92 EERCRSCGLLSGSITQTYIHYLECKNRG  119 (400)
Q Consensus        92 ~~~C~~C~~~f~~~~~l~~H~~~~h~~~  119 (400)
                      .|.||+|.+.|.+...|..|+...|..+
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H~~~   32 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVHDAG   32 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHTSSS
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhccccC
Confidence            3789999999999999999988888653

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=88.55  E-value=0.25  Score=26.14  Aligned_cols=24  Identities=21%  Similarity=0.611  Sum_probs=19.8

Q ss_pred             cCCCCccccCCchHHHHHHhhhCC
Q psy4576         369 TCHLCPQKFRQRSSYTLHYKTHHP  392 (400)
Q Consensus       369 ~C~~C~~~f~~~~~l~~H~~~hh~  392 (400)
                      .|..|.+.++...+|.+|++.-|.
T Consensus        11 hcrfckkkysdvknlikhire~hd   34 (37)
T 2elu_A           11 HCRFCKKKYSDVKNLIKHIRDAHD   34 (37)
T ss_dssp             EETTTTEECSSHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC
Confidence            588888888888888888887663

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=86.03  E-value=0.6  Score=24.71  Aligned_cols=22  Identities=32%  Similarity=0.918  Sum_probs=10.9

Q ss_pred             ccccccccCChHHHHHHhhhhc
Q psy4576         124 CSLCNESFENKKVLFRHLRGKH  145 (400)
Q Consensus       124 C~~C~~~f~~~~~l~~H~~~~h  145 (400)
                      |.+|.+.|....+|..|++..|
T Consensus        12 crfckkkysdvknlikhire~h   33 (37)
T 2elu_A           12 CRFCKKKYSDVKNLIKHIRDAH   33 (37)
T ss_dssp             ETTTTEECSSHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Confidence            4455555555555555554443

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=85.56  E-value=0.45  Score=31.68  Aligned_cols=48  Identities=17%  Similarity=0.432  Sum_probs=30.8

Q ss_pred             CCcccCcCccccCCHHHHHHHHHHcCCCCceecccccccccChhHHhhhH
Q psy4576         215 ANLSCEFCSRIFTKKELLRSHLAVHKIGKNYQCYYCRKTYCHKPNLTNHI  264 (400)
Q Consensus       215 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~  264 (400)
                      ..|.|..|+..+... .+..|...-.+...|.|-.|+..|.. ..+..|.
T Consensus         9 V~F~C~~Cgd~lKK~-kv~~H~~~Cr~~~~~SCIDC~~~F~~-~~y~~Ht   56 (79)
T 1wjv_A            9 VFFTCNACGESVKKI-QVEKHVSNCRNCECLSCIDCGKDFWG-DDYKSHV   56 (79)
T ss_dssp             CEEEESSSCCEEETT-HHHHHHHHCTTCCEEEETTTTEEEEG-GGTTTCC
T ss_pred             eEEEcCCCCCeeecc-cchhHHhhCCCCCcEEecccCCeeCC-CCEeCEe
Confidence            346777777666544 47777665555556777777777764 4466663

>2k9h_A Glycoprotein; hantavirus, zinc finger, CCHC, metal binding protein; NMR {Andes virus}

Probab=85.49  E-value=1.1  Score=27.21  Aligned_cols=21  Identities=29%  Similarity=0.556  Sum_probs=10.3

Q ss_pred             cccccccccCChHHHHHHhhh
Q psy4576         123 ECSLCNESFENKKVLFRHLRG  143 (400)
Q Consensus       123 ~C~~C~~~f~~~~~l~~H~~~  143 (400)
                      .|.+|.....+...|..|...
T Consensus         5 vC~~C~~ECET~kEl~~H~~s   25 (57)
T 2k9h_A            5 VCDVCHHECETAKELESHRQS   25 (57)
T ss_dssp             BCTTTCCBCSSTTTHHHHHHH
T ss_pred             hhhHHHhhhhhHHHHHHHhcc
Confidence            344455445555555555443

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=85.41  E-value=0.65  Score=25.61  Aligned_cols=19  Identities=16%  Similarity=0.469  Sum_probs=8.3

Q ss_pred             cccCcccccccChhHHHHH
Q psy4576          93 ERCRSCGLLSGSITQTYIH  111 (400)
Q Consensus        93 ~~C~~C~~~f~~~~~l~~H  111 (400)
                      +.|..|+..|++...+..|
T Consensus         9 ~~C~~C~IsF~~l~ty~aH   27 (36)
T 1fu9_A            9 KYCSTCDISFNYVKTYLAH   27 (36)
T ss_dssp             SEETTTTEECSSHHHHHHH
T ss_pred             CeeccccceehhhHHHhhh
Confidence            3444444444444444444

>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}

Probab=81.92  E-value=0.28  Score=32.43  Aligned_cols=14  Identities=21%  Similarity=0.619  Sum_probs=10.5

Q ss_pred             CcccCCCCccccCC
Q psy4576         366 TSHTCHLCPQKFRQ  379 (400)
Q Consensus       366 ~~~~C~~C~~~f~~  379 (400)
                      -.|+||.||..|--
T Consensus        50 F~FkCP~CgEEFyG   63 (95)
T 2k5c_A           50 FVFKCPVCGEEFYG   63 (95)
T ss_dssp             SEEECTTTCCEEET
T ss_pred             HhhcCCCccHHHhc
Confidence            35899999987743

>2djr_A Zinc finger BED domain-containing protein 2; C2H2 type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=81.54  E-value=0.52  Score=31.48  Aligned_cols=27  Identities=26%  Similarity=0.472  Sum_probs=21.2

Q ss_pred             cccCCCCccccC-------CchHHHHHHhhhCCC
Q psy4576         367 SHTCHLCPQKFR-------QRSSYTLHYKTHHPG  393 (400)
Q Consensus       367 ~~~C~~C~~~f~-------~~~~l~~H~~~hh~~  393 (400)
                      .=.|.+|++.++       ..+.|.+|++..|+.
T Consensus        28 ~A~Ck~C~k~ls~g~~s~~GTS~L~rHL~~~H~~   61 (76)
T 2djr_A           28 YATCRLCGRQVSRGPGVNVGTTALWKHLKSMHRE   61 (76)
T ss_dssp             CEEESSSCCBCCCCSSCCSSSCHHHHHHHHTTHH
T ss_pred             EEECCCCCCccCCCCCCCCchHHHHHHHHHHCHH
Confidence            457888888886       356899999999864

>2k9h_A Glycoprotein; hantavirus, zinc finger, CCHC, metal binding protein; NMR {Andes virus}

Probab=81.16  E-value=2.9  Score=25.34  Aligned_cols=45  Identities=20%  Similarity=0.356  Sum_probs=34.9

Q ss_pred             ccCcccccccChhHHHHHHhhhcCCCCcccccccc-cccCChHHHHHHhh
Q psy4576          94 RCRSCGLLSGSITQTYIHYLECKNRGKLYECSLCN-ESFENKKVLFRHLR  142 (400)
Q Consensus        94 ~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~-~~f~~~~~l~~H~~  142 (400)
                      .|.+|.....+...|..|.+..-.    -+|+.|- ..-.+.+.|..|.+
T Consensus         5 vC~~C~~ECET~kEl~~H~~sCp~----gqCPYC~~~~e~tesAlQaHfk   50 (57)
T 2k9h_A            5 VCDVCHHECETAKELESHRQSCIN----GQCPYCMTITEATESALQAHYS   50 (57)
T ss_dssp             BCTTTCCBCSSTTTHHHHHHHHTT----TBCTTTCCBCCSSHHHHHHHHT
T ss_pred             hhhHHHhhhhhHHHHHHHhccCCC----CCCCcccCcCCcCHHHHHHHHH
Confidence            699999999999999999544433    3678884 45678888888876

>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A

Probab=80.87  E-value=1.5  Score=22.87  Aligned_cols=20  Identities=20%  Similarity=0.461  Sum_probs=10.8

Q ss_pred             cccCcCccccCCHHHHHHHH
Q psy4576         217 LSCEFCSRIFTKKELLRSHL  236 (400)
Q Consensus       217 ~~C~~C~~~f~~~~~l~~H~  236 (400)
                      |.|+.|.....+...|..|.
T Consensus         4 ~~CpvCk~q~Pd~kt~~~H~   23 (28)
T 2jvx_A            4 FCCPKCQYQAPDMDTLQIHV   23 (28)
T ss_dssp             EECTTSSCEESSHHHHHHHH
T ss_pred             ccCccccccCcChHHHHHHH
Confidence            45555555555555555554

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=80.85  E-value=0.85  Score=30.39  Aligned_cols=45  Identities=22%  Similarity=0.470  Sum_probs=26.6

Q ss_pred             CcccccccccCCHHHHHHHHHHhcCCCCeecccccccccChhhHHHH
Q psy4576         312 PVCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVH  358 (400)
Q Consensus       312 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H  358 (400)
                      |.|..|+.++. +..+..|...-.+...|.|-.|++.|.. ..++.|
T Consensus        11 F~C~~Cgd~lK-K~kv~~H~~~Cr~~~~~SCIDC~~~F~~-~~y~~H   55 (79)
T 1wjv_A           11 FTCNACGESVK-KIQVEKHVSNCRNCECLSCIDCGKDFWG-DDYKSH   55 (79)
T ss_dssp             EEESSSCCEEE-TTHHHHHHHHCTTCCEEEETTTTEEEEG-GGTTTC
T ss_pred             EEcCCCCCeee-cccchhHHhhCCCCCcEEecccCCeeCC-CCEeCE
Confidence            36777776654 3456666655554445777777777763 334444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	400
d2cota2	38	g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont	7e-07
d2cota2	38	g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont	0.003
d2cota2	38	g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont	0.004
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	9e-07
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	0.003
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	0.004
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	1e-05
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	2e-04
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	8e-04
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	2e-05
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	0.001
d1srka_	35	g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {M	3e-05
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	4e-05
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	0.004
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	9e-05
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	3e-04
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	5e-04
d1p7aa_	37	g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (	1e-04
d1p7aa_	37	g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (	0.004
d2adra1	29	g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Sac	2e-04
d1sp1a_	29	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	8e-04
d1ncsa_	47	g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's ye	0.001
d1a1ia2	28	g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus)	0.002

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (102), Expect = 7e-07
 Identities = 11/38 (28%), Positives = 18/38 (47%)

Query: 328 ANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGE 365
                     + + C+ CG+S+S ++ L  H   HTGE
Sbjct: 1   GRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE 38

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.8 bits (75), Expect = 0.003
 Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 303 HQREHQGKKP-VCTICGKMLIDKRSLANHMNTHTG 336
            + + + ++   C  CGK       L+ H  THTG
Sbjct: 3   SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTG 37

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.8 bits (75), Expect = 0.004
 Identities = 7/33 (21%), Positives = 11/33 (33%)

Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
                     + C  C + F   S  + H +TH
Sbjct: 3   SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH 35

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (101), Expect = 9e-07
 Identities = 14/32 (43%), Positives = 21/32 (65%)

Query: 334 HTGLKPHCCEICGRSYSTAAYLKVHMSCHTGE 365
           H+G KP+ C  CG+++S ++ L  H   HTGE
Sbjct: 2   HSGEKPYGCVECGKAFSRSSILVQHQRVHTGE 33

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.6 bits (75), Expect = 0.003
 Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 1/31 (3%)

Query: 307 HQGKKP-VCTICGKMLIDKRSLANHMNTHTG 336
           H G+KP  C  CGK       L  H   HTG
Sbjct: 2   HSGEKPYGCVECGKAFSRSSILVQHQRVHTG 32

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.6 bits (75), Expect = 0.004
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 362 HTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
           H+GE  + C  C + F + S    H + H
Sbjct: 2   HSGEKPYGCVECGKAFSRSSILVQHQRVH 30

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (93), Expect = 1e-05
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 338 KPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
           K + C+ CG+S++  +    HMS H G   + C +C +KF+ +     H K H
Sbjct: 2   KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (84), Expect = 2e-04
 Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 284 FICDVCGKSYVRKGALTEHHQREHQGKKPVCTICGKMLIDKRSLANHMNTH 334
           + C  CGKS+  K     H       +   C +CGK    K  L  HM  H
Sbjct: 4   YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (80), Expect = 8e-04
 Identities = 17/46 (36%), Positives = 24/46 (52%)

Query: 317 CGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCH 362
           CGK    K     HM+ H GL+P+ C +CG+ +    +L  HM  H
Sbjct: 8   CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (92), Expect = 2e-05
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 333 THTGLKPHCCEICGRSYSTAAYLKVHMSCHTGE 365
           THTG KP+ C  C +++     L +H   +   
Sbjct: 2   THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP 34

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (78), Expect = 0.001
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 362 HTGETSHTCHLCPQKFRQRSSYTLHYKTHH 391
           HTGE  + C  C + FRQ+    +H+K +H
Sbjct: 3   HTGEKPYACSHCDKTFRQKQLLDMHFKRYH 32

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 35

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.6 bits (90), Expect = 3e-05
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 334 HTGLKPHCCEICGRSYSTAAYLKVHMSCHTGETS 367
            +G +P  C IC  +++T A    H+  HT   S
Sbjct: 2   SSGKRPFVCRICLSAFTTKANCARHLKVHTDTLS 35

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (90), Expect = 4e-05
 Identities = 11/33 (33%), Positives = 19/33 (57%)

Query: 333 THTGLKPHCCEICGRSYSTAAYLKVHMSCHTGE 365
           TH+G KP+ C IC   ++ +  +K+H+     E
Sbjct: 2   THSGEKPYECYICHARFTQSGTMKMHILQKHTE 34

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.6 bits (75), Expect = 0.004
 Identities = 9/30 (30%), Positives = 16/30 (53%)

Query: 362 HTGETSHTCHLCPQKFRQRSSYTLHYKTHH 391
           H+GE  + C++C  +F Q  +  +H    H
Sbjct: 3   HSGEKPYECYICHARFTQSGTMKMHILQKH 32

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (87), Expect = 9e-05
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 338 KPHCCEICGRSYSTAAYLKVHM-SCHTGETSHTCHL 372
           KP+ C+ CG+ +S   +L  H+   HT E  H C +
Sbjct: 4   KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (83), Expect = 3e-04
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 284 FICDVCGKSYVRKGALTEHHQREHQGKKP 312
           +IC  CGK + R   L  H ++ H  ++P
Sbjct: 6   YICQSCGKGFSRPDHLNGHIKQVHTSERP 34

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (82), Expect = 5e-04
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 309 GKKPVCTICGKMLIDKRSLANHM-NTHTGLKPHCCEI 344
           GK  +C  CGK       L  H+   HT  +PH C++
Sbjct: 3   GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.0 bits (86), Expect = 1e-04
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTG 364
                TG+KP  C  C RS+S + +L +H   H  
Sbjct: 2   STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML 36

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.4 bits (74), Expect = 0.004
 Identities = 9/33 (27%), Positives = 11/33 (33%)

Query: 358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH 390
                TG     C  C + F +     LH K H
Sbjct: 2   STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

 Score = 35.7 bits (83), Expect = 2e-04
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 338 KPHCCEICGRSYSTAAYLKVHMSCHTGE 365
           +   CE+C R+++   +LK H   HT E
Sbjct: 1   RSFVCEVCTRAFARQEHLKRHYRSHTNE 28

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (79), Expect = 8e-04
 Identities = 6/28 (21%), Positives = 12/28 (42%)

Query: 338 KPHCCEICGRSYSTAAYLKVHMSCHTGE 365
           K   C  C + +  + +L  H+  H  +
Sbjct: 1   KKFACPECPKRFMRSDHLSKHIKTHQNK 28

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 47

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.1 bits (78), Expect = 0.001
 Identities = 5/44 (11%), Positives = 13/44 (29%), Gaps = 2/44 (4%)

Query: 324 KRSLANHMNTHTGLKPHCCEIC--GRSYSTAAYLKVHMSCHTGE 365
            R   +        K   C      +++     ++ H+  H  +
Sbjct: 3   PRGSIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED 46

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.4 bits (77), Expect = 0.002
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 338 KPHCCEICGRSYSTAAYLKVHMSCHTG 364
           KP  C IC R++S + +L  H+  HTG
Sbjct: 2   KPFQCRICMRNFSRSDHLTTHIRTHTG 28

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	400
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.68
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.57
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.32
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.23
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.22
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.22
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.19
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.18
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.16
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.15
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.15
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.12
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.08
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.07
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.05
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.04
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.01
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.01
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.0
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.96
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.93
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.92
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.9
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.89
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.87
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.84
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.8
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.76
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.73
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.72
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.64
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.63
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.57
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.53
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.5
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.48
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.47
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.39
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.36
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.34
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.31
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.27
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.26
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.25
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.22
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.22
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.21
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.21
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.11
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.0
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.87
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.83
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.82
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.81
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.8
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.78
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.67
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.66
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.63
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.61
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.58
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.53
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.51
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.47
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.41
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.41
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.37
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.33
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.32
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.27
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.24
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.17
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.14
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.11
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.06
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.02
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.96
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.93
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.84
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.82
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.81
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.56
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	96.54
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.48
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.45
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	96.44
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.32
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	96.29
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	96.04
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.96
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.88
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	95.61
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.57
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	95.43
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	95.4
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	94.99
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	94.47
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	94.45
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	94.43
d1y0jb1	36	U-shaped transcription factor, different fingers {	94.15
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	93.7
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	93.51
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	93.37
d1y0jb1	36	U-shaped transcription factor, different fingers {	93.23
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	93.11
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	92.93
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	92.71
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	91.73
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	91.37
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	90.86
d2ghfa2	36	Zinc fingers and homeoboxes protein 1, ZHX1 {Human	90.6
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	90.44
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	89.8
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	89.41
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	89.27
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	89.24
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	89.18
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	88.8
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	87.47
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	86.87
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	84.92
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	84.89
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	82.55
d2ghfa2	36	Zinc fingers and homeoboxes protein 1, ZHX1 {Human	82.05

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.1e-17  Score=105.64  Aligned_cols=53  Identities=32%  Similarity=0.591  Sum_probs=49.2

Q ss_pred             CCCeecccccccccChhhHHHHHhhcCCCCcccCCCCccccCCchHHHHHHhhh
Q psy4576         337 LKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTH  390 (400)
Q Consensus       337 ~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  390 (400)
                      ||||+|. ||++|.....|..|+++|+|++||.|++||++|...+.|..|+++|
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            5899995 9999999999999999999999999999999999999999999876

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=8.8e-16  Score=96.75  Aligned_cols=53  Identities=36%  Similarity=0.709  Sum_probs=49.6

Q ss_pred             CCCCcccccccccCCHHHHHHHHHHhcCCCCeecccccccccChhhHHHHHhhc
Q psy4576         309 GKKPVCTICGKMLIDKRSLANHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCH  362 (400)
Q Consensus       309 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h  362 (400)
                      +++|.|. ||+.|.....|..|+++|++++||.|.+||++|...+.|..|+++|
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            3577995 9999999999999999999999999999999999999999999987

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=5.1e-13  Score=76.04  Aligned_cols=37  Identities=35%  Similarity=0.727  Sum_probs=33.2

Q ss_pred             CCCCeecccccccccChhhHHHHHh-hcCCCCcccCCC
Q psy4576         336 GLKPHCCEICGRSYSTAAYLKVHMS-CHTGETSHTCHL  372 (400)
Q Consensus       336 ~~~~~~C~~C~~~f~~~~~L~~H~~-~h~~~~~~~C~~  372 (400)
                      .++||+|.+||++|...+.|.+|++ +|++++||+|++
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            4689999999999999999999986 799999999975

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=4.9e-13  Score=76.40  Aligned_cols=35  Identities=20%  Similarity=0.327  Sum_probs=21.3

Q ss_pred             HHhhcCCCCcccCCCCccccCCchHHHHHHhhhCC
Q psy4576         358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHP  392 (400)
Q Consensus       358 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~  392 (400)
                      |+++|++++||.|++||++|...++|..|+++|.+
T Consensus         3 H~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtG   37 (38)
T d2cota2           3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTG   37 (38)
T ss_dssp             CCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCC
T ss_pred             cCcccCCCCCEecCCCCceeeCHHHHHHhCccCCC
Confidence            55566666666666666666666666666666554

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=2.6e-12  Score=70.05  Aligned_cols=32  Identities=44%  Similarity=0.829  Sum_probs=20.5

Q ss_pred             hcCCCCeecccccccccChhhHHHHHhhcCCC
Q psy4576         334 HTGLKPHCCEICGRSYSTAAYLKVHMSCHTGE  365 (400)
Q Consensus       334 h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~  365 (400)
                      |++++||+|..||++|...+.|..|+++|+||
T Consensus         2 HTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           2 HSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             cCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            56666666666666666666666666666654

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.5e-12  Score=74.39  Aligned_cols=37  Identities=30%  Similarity=0.496  Sum_probs=35.2

Q ss_pred             HHHHHhcCCCCeecccccccccChhhHHHHHhhcCCC
Q psy4576         329 NHMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGE  365 (400)
Q Consensus       329 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~  365 (400)
                      +|+++|++++||+|+.||++|...+.|..|+++|+||
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            4788999999999999999999999999999999986

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=4.5e-12  Score=71.19  Aligned_cols=33  Identities=36%  Similarity=0.746  Sum_probs=19.9

Q ss_pred             hhcCCCCcccCCCCccccCCchHHHHHHhhhCC
Q psy4576         360 SCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHP  392 (400)
Q Consensus       360 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~  392 (400)
                      |+|+|++||+|++||++|...+.|..|+++|++
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~   33 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHD   33 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTC
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCC
Confidence            355666666666666666666666666666554

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.18  E-value=3.5e-12  Score=72.23  Aligned_cols=34  Identities=26%  Similarity=0.465  Sum_probs=22.0

Q ss_pred             HHhhcCCCCcccCCCCccccCCchHHHHHHhhhC
Q psy4576         358 HMSCHTGETSHTCHLCPQKFRQRSSYTLHYKTHH  391 (400)
Q Consensus       358 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh  391 (400)
                      |.|+|+|++||+|++|+++|+.+++|.+|+++|-
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~   35 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCc
Confidence            4566666666666666666666666666666653

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=6.5e-12  Score=70.37  Aligned_cols=34  Identities=26%  Similarity=0.620  Sum_probs=25.9

Q ss_pred             hhcCCCCcccCCCCccccCCchHHHHHHhhhCCC
Q psy4576         360 SCHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPG  393 (400)
Q Consensus       360 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~  393 (400)
                      ++|+|++||+|++|+++|+..++|.+|++.+|++
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccccCC
Confidence            4677888888888888888888888887776654

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=7.2e-12  Score=70.35  Aligned_cols=35  Identities=29%  Similarity=0.600  Sum_probs=32.6

Q ss_pred             HHhcCCCCeecccccccccChhhHHHHHhhcCCCC
Q psy4576         332 NTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGET  366 (400)
Q Consensus       332 ~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~  366 (400)
                      ++|+|++||+|.+||++|...+.|..|+++|+++.
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~~   35 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN   35 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSS
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCCCC
Confidence            47999999999999999999999999999998764

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=9e-12  Score=67.87  Aligned_cols=33  Identities=27%  Similarity=0.493  Sum_probs=31.3

Q ss_pred             hcCCCCcccCCCCccccCCchHHHHHHhhhCCC
Q psy4576         361 CHTGETSHTCHLCPQKFRQRSSYTLHYKTHHPG  393 (400)
Q Consensus       361 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~  393 (400)
                      +|+|++||+|..||++|...+.|..|+++|.++
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            589999999999999999999999999999874

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.12  E-value=6.6e-12  Score=71.07  Aligned_cols=35  Identities=34%  Similarity=0.557  Sum_probs=32.8

Q ss_pred             HHHHhcCCCCeecccccccccChhhHHHHHhhcCC
Q psy4576         330 HMNTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTG  364 (400)
Q Consensus       330 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~  364 (400)
                      |.++|++++||+|++|+++|.+.+.|.+|+++|.+
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            56889999999999999999999999999999964

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.08  E-value=3e-11  Score=66.71  Aligned_cols=31  Identities=32%  Similarity=0.680  Sum_probs=16.2

Q ss_pred             hcCCCCeecccccccccChhhHHHHHhhcCC
Q psy4576         334 HTGLKPHCCEICGRSYSTAAYLKVHMSCHTG  364 (400)
Q Consensus       334 h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~  364 (400)
                      |+|++||+|.+|++.|.+.+.|.+|+++|++
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~   32 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTD   32 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTS
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCC
Confidence            3455555555555555555555555555543

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.07  E-value=3.9e-11  Score=66.24  Aligned_cols=33  Identities=21%  Similarity=0.580  Sum_probs=30.6

Q ss_pred             cCCCCcccCCCCccccCCchHHHHHHhhhCCCC
Q psy4576         362 HTGETSHTCHLCPQKFRQRSSYTLHYKTHHPGV  394 (400)
Q Consensus       362 h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~  394 (400)
                      |+|++||+|++|++.|+.+++|.+|+++|....
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~~   34 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTL   34 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCCcC
Confidence            789999999999999999999999999987653

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.05  E-value=4.6e-11  Score=63.10  Aligned_cols=29  Identities=34%  Similarity=0.741  Sum_probs=17.9

Q ss_pred             CCeecccccccccChhhHHHHHhhcCCCC
Q psy4576         338 KPHCCEICGRSYSTAAYLKVHMSCHTGET  366 (400)
Q Consensus       338 ~~~~C~~C~~~f~~~~~L~~H~~~h~~~~  366 (400)
                      +||.|++|+++|...+.|.+|+++|+||+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            45666666666666666666666666653

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=6.4e-11  Score=67.20  Aligned_cols=38  Identities=18%  Similarity=0.245  Sum_probs=33.1

Q ss_pred             cccccccCcccccccChhHHHHHHhhhcCCCCcccccc
Q psy4576          89 VWDEERCRSCGLLSGSITQTYIHYLECKNRGKLYECSL  126 (400)
Q Consensus        89 ~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~  126 (400)
                      .++||.|.+|++.|.....|..|++.+|++++||+|.+
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            46889999999999999999999767899999999874

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=4.9e-11  Score=66.71  Aligned_cols=34  Identities=32%  Similarity=0.613  Sum_probs=30.1

Q ss_pred             HHhcCCCCeecccccccccChhhHHHHHhhcCCC
Q psy4576         332 NTHTGLKPHCCEICGRSYSTAAYLKVHMSCHTGE  365 (400)
Q Consensus       332 ~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~  365 (400)
                      ++|+|++||+|++|+++|...++|.+|++.++++
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccccCC
Confidence            4699999999999999999999999998765544

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.01  E-value=5.4e-11  Score=61.94  Aligned_cols=27  Identities=44%  Similarity=0.870  Sum_probs=14.8

Q ss_pred             CCeecccccccccChhhHHHHHhhcCC
Q psy4576         338 KPHCCEICGRSYSTAAYLKVHMSCHTG  364 (400)
Q Consensus       338 ~~~~C~~C~~~f~~~~~L~~H~~~h~~  364 (400)
                      |||+|++|+++|...+.|.+|+++|+|
T Consensus         2 KPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           2 KPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             cCccCCCCcCEecccccccccCCCccC
Confidence            455555555555555555555555543

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=7.9e-11  Score=62.02  Aligned_cols=28  Identities=21%  Similarity=0.523  Sum_probs=16.6

Q ss_pred             CCeecccccccccChhhHHHHHhhcCCC
Q psy4576         338 KPHCCEICGRSYSTAAYLKVHMSCHTGE  365 (400)
Q Consensus       338 ~~~~C~~C~~~f~~~~~L~~H~~~h~~~  365 (400)
                      |||.|++|+++|...+.|.+|+++|+|+
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~Htge   28 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNK   28 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCc
Confidence            4556666666666666666666666555

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.96  E-value=1e-10  Score=60.92  Aligned_cols=28  Identities=25%  Similarity=0.626  Sum_probs=26.5

Q ss_pred             CCcccCCCCccccCCchHHHHHHhhhCC
Q psy4576         365 ETSHTCHLCPQKFRQRSSYTLHYKTHHP  392 (400)
Q Consensus       365 ~~~~~C~~C~~~f~~~~~l~~H~~~hh~  392 (400)
                      |+||+|++|+++|+..+.|.+|+++|.|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            6899999999999999999999999965

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.93  E-value=2.6e-10  Score=60.12  Aligned_cols=29  Identities=24%  Similarity=0.643  Sum_probs=27.5

Q ss_pred             CcccCCCCccccCCchHHHHHHhhhCCCC
Q psy4576         366 TSHTCHLCPQKFRQRSSYTLHYKTHHPGV  394 (400)
Q Consensus       366 ~~~~C~~C~~~f~~~~~l~~H~~~hh~~~  394 (400)
                      +||+|++|+++|+..+.|.+|+++|.+++
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            68999999999999999999999999875

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=2.1e-10  Score=63.85  Aligned_cols=32  Identities=31%  Similarity=0.658  Sum_probs=24.3

Q ss_pred             eeccc--ccccccChhhHHHHHhhcCCCCcccCC
Q psy4576         340 HCCEI--CGRSYSTAAYLKVHMSCHTGETSHTCH  371 (400)
Q Consensus       340 ~~C~~--C~~~f~~~~~L~~H~~~h~~~~~~~C~  371 (400)
                      |.|+.  |+++|...+.|.+|+++|+|++||+|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            66765  777777777777777777777777775

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.90  E-value=9.7e-11  Score=69.80  Aligned_cols=40  Identities=18%  Similarity=0.411  Sum_probs=25.7

Q ss_pred             hHHHHHhhcCCCCcccCCC--CccccCCchHHHHHHhhhCCCC
Q psy4576         354 YLKVHMSCHTGETSHTCHL--CPQKFRQRSSYTLHYKTHHPGV  394 (400)
Q Consensus       354 ~L~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~hh~~~  394 (400)
                      .|.+|+. |++++||+|++  |+++|+..++|..|+++|.+++
T Consensus         6 ~l~~h~~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           6 SIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SGGGSCE-EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             hhcchhh-ccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            3445553 66677777765  7777777777777777766653

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=4.2e-10  Score=59.16  Aligned_cols=29  Identities=28%  Similarity=0.603  Sum_probs=27.4

Q ss_pred             CcccCCCCccccCCchHHHHHHhhhCCCC
Q psy4576         366 TSHTCHLCPQKFRQRSSYTLHYKTHHPGV  394 (400)
Q Consensus       366 ~~~~C~~C~~~f~~~~~l~~H~~~hh~~~  394 (400)
                      +||.|++||++|...+.|.+|+++|.+++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            68999999999999999999999999874

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.87  E-value=4.4e-11  Score=71.33  Aligned_cols=40  Identities=15%  Similarity=0.365  Sum_probs=35.3

Q ss_pred             HHHHHHHHhcCCCCeeccc--ccccccChhhHHHHHhhcCCCC
Q psy4576         326 SLANHMNTHTGLKPHCCEI--CGRSYSTAAYLKVHMSCHTGET  366 (400)
Q Consensus       326 ~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~L~~H~~~h~~~~  366 (400)
                      .|..|+ .|++++||.|.+  |+++|...+.|..|+++|+|++
T Consensus         6 ~l~~h~-~h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           6 SIDKYV-KEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SGGGSC-EEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             hhcchh-hccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            456677 499999999987  9999999999999999999985

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=4.9e-10  Score=56.61  Aligned_cols=24  Identities=33%  Similarity=0.611  Sum_probs=11.8

Q ss_pred             CeecccccccccChhhHHHHHhhc
Q psy4576         339 PHCCEICGRSYSTAAYLKVHMSCH  362 (400)
Q Consensus       339 ~~~C~~C~~~f~~~~~L~~H~~~h  362 (400)
                      ||+|..||++|...+.|..|+++|
T Consensus         2 Py~C~eCgK~F~~~s~L~~HqriH   25 (26)
T d1x6ea2           2 PYKCLECGKAFSQNSGLINHQRIH   25 (26)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CccCCCCcCeeccCcccccCccCC
Confidence            444555555554444444444444

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=9.7e-10  Score=55.50  Aligned_cols=26  Identities=27%  Similarity=0.476  Sum_probs=24.6

Q ss_pred             CcccCCCCccccCCchHHHHHHhhhC
Q psy4576         366 TSHTCHLCPQKFRQRSSYTLHYKTHH  391 (400)
Q Consensus       366 ~~~~C~~C~~~f~~~~~l~~H~~~hh  391 (400)
                      +||+|+.||++|...+.|..|+++|.
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            69999999999999999999999983

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=2e-09  Score=56.86  Aligned_cols=28  Identities=54%  Similarity=0.994  Sum_probs=15.9

Q ss_pred             CCeeccc--ccccccChhhHHHHHhhcCCC
Q psy4576         338 KPHCCEI--CGRSYSTAAYLKVHMSCHTGE  365 (400)
Q Consensus       338 ~~~~C~~--C~~~f~~~~~L~~H~~~h~~~  365 (400)
                      |||.|++  |+++|...+.|.+|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            3555555  555555555555555555553

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=2e-09  Score=59.77  Aligned_cols=33  Identities=33%  Similarity=0.604  Sum_probs=29.8

Q ss_pred             Ccccc--cccccCCHHHHHHHHHHhcCCCCeeccc
Q psy4576         312 PVCTI--CGKMLIDKRSLANHMNTHTGLKPHCCEI  344 (400)
Q Consensus       312 ~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~  344 (400)
                      |.|+.  |++.|.....|.+|+++|+|++||+|+.
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~f   36 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF   36 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCS
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCCC
Confidence            46776  9999999999999999999999999973

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=2.2e-09  Score=56.89  Aligned_cols=28  Identities=39%  Similarity=0.882  Sum_probs=16.8

Q ss_pred             CCeeccc--ccccccChhhHHHHHhhcCCC
Q psy4576         338 KPHCCEI--CGRSYSTAAYLKVHMSCHTGE  365 (400)
Q Consensus       338 ~~~~C~~--C~~~f~~~~~L~~H~~~h~~~  365 (400)
                      |||.|++  |+++|...+.|.+|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            4566655  666666666666666666554

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=8.6e-09  Score=55.02  Aligned_cols=29  Identities=34%  Similarity=0.819  Sum_probs=17.5

Q ss_pred             CCeecc--cccccccChhhHHHHHhhcCCCC
Q psy4576         338 KPHCCE--ICGRSYSTAAYLKVHMSCHTGET  366 (400)
Q Consensus       338 ~~~~C~--~C~~~f~~~~~L~~H~~~h~~~~  366 (400)
                      +||.|+  .|+++|+..+.|.+|+++|+|++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            456664  36666666666666666666653

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=8.6e-09  Score=54.38  Aligned_cols=28  Identities=18%  Similarity=0.591  Sum_probs=26.4

Q ss_pred             CcccCCC--CccccCCchHHHHHHhhhCCC
Q psy4576         366 TSHTCHL--CPQKFRQRSSYTLHYKTHHPG  393 (400)
Q Consensus       366 ~~~~C~~--C~~~f~~~~~l~~H~~~hh~~  393 (400)
                      +||+|++  |+++|+..+.|.+|+++|.++
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            6899999  999999999999999999875

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=1e-08  Score=54.22  Aligned_cols=28  Identities=18%  Similarity=0.482  Sum_probs=26.0

Q ss_pred             CcccCCC--CccccCCchHHHHHHhhhCCC
Q psy4576         366 TSHTCHL--CPQKFRQRSSYTLHYKTHHPG  393 (400)
Q Consensus       366 ~~~~C~~--C~~~f~~~~~l~~H~~~hh~~  393 (400)
                      +||+|++  |+++|+..+.|.+|+++|.++
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            6899988  999999999999999999874

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=2.4e-08  Score=53.23  Aligned_cols=29  Identities=21%  Similarity=0.485  Sum_probs=26.4

Q ss_pred             CcccCC--CCccccCCchHHHHHHhhhCCCC
Q psy4576         366 TSHTCH--LCPQKFRQRSSYTLHYKTHHPGV  394 (400)
Q Consensus       366 ~~~~C~--~C~~~f~~~~~l~~H~~~hh~~~  394 (400)
                      +||.|+  .|+++|+..++|.+|+++|.+++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            589996  59999999999999999998874

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.50  E-value=1.9e-08  Score=52.51  Aligned_cols=27  Identities=41%  Similarity=0.876  Sum_probs=14.6

Q ss_pred             CCeeccc--ccccccChhhHHHHHhhcCC
Q psy4576         338 KPHCCEI--CGRSYSTAAYLKVHMSCHTG  364 (400)
Q Consensus       338 ~~~~C~~--C~~~f~~~~~L~~H~~~h~~  364 (400)
                      |||.|++  |+++|...+.|.+|+++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            3555544  55555555555555555543

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.48  E-value=4.3e-08  Score=52.48  Aligned_cols=26  Identities=23%  Similarity=0.533  Sum_probs=12.8

Q ss_pred             CcccCCC--CccccCCchHHHHHHhhhC
Q psy4576         366 TSHTCHL--CPQKFRQRSSYTLHYKTHH  391 (400)
Q Consensus       366 ~~~~C~~--C~~~f~~~~~l~~H~~~hh  391 (400)
                      +||.|++  |+++|+..++|.+|+++|.
T Consensus         2 rP~~C~~pgC~k~F~r~~~L~~H~r~Ht   29 (32)
T d1zfda_           2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             cCeECcCCCCCCeeCCHHHHHHHhhhcc
Confidence            4455544  5555555555555554444

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.47  E-value=5.3e-08  Score=52.12  Aligned_cols=29  Identities=21%  Similarity=0.492  Sum_probs=27.0

Q ss_pred             CCCeeccc--ccccccChhhHHHHHhhcCCC
Q psy4576         337 LKPHCCEI--CGRSYSTAAYLKVHMSCHTGE  365 (400)
Q Consensus       337 ~~~~~C~~--C~~~f~~~~~L~~H~~~h~~~  365 (400)
                      ++||.|++  |+++|+..+.|.+|+++|+.+
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence            58999998  999999999999999999864

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.39  E-value=4.3e-08  Score=51.12  Aligned_cols=27  Identities=22%  Similarity=0.584  Sum_probs=25.1

Q ss_pred             CcccCCC--CccccCCchHHHHHHhhhCC
Q psy4576         366 TSHTCHL--CPQKFRQRSSYTLHYKTHHP  392 (400)
Q Consensus       366 ~~~~C~~--C~~~f~~~~~l~~H~~~hh~  392 (400)
                      +||+|++  |+++|++.+.|.+|+++|.|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            6899988  99999999999999999864

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=5.1e-08  Score=50.20  Aligned_cols=24  Identities=33%  Similarity=0.652  Sum_probs=12.7

Q ss_pred             cccCCC--CccccCCchHHHHHHhhh
Q psy4576         367 SHTCHL--CPQKFRQRSSYTLHYKTH  390 (400)
Q Consensus       367 ~~~C~~--C~~~f~~~~~l~~H~~~h  390 (400)
                      ||.|+.  |+++|++.++|.+|+++|
T Consensus         2 Pf~C~~~gC~K~F~~~~~L~~H~r~H   27 (28)
T d1ubdc4           2 PYVCPFDGCNKKFAQSTNLKSHILTH   27 (28)
T ss_dssp             CCCCCSTTCCCCCSSTTTTHHHHHHH
T ss_pred             CcCCCCCCcCCcCCCHHHHHHHHhhc
Confidence            455544  555555555555555554

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=8.2e-08  Score=49.42  Aligned_cols=26  Identities=27%  Similarity=0.769  Sum_probs=24.6

Q ss_pred             CCeeccc--ccccccChhhHHHHHhhcC
Q psy4576         338 KPHCCEI--CGRSYSTAAYLKVHMSCHT  363 (400)
Q Consensus       338 ~~~~C~~--C~~~f~~~~~L~~H~~~h~  363 (400)
                      +||.|++  |+++|+..+.|.+|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            6999998  9999999999999999985

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=1.9e-07  Score=46.63  Aligned_cols=30  Identities=23%  Similarity=0.665  Sum_probs=20.5

Q ss_pred             CCcccCCCCccccCCchHHHHHHhhhCCCC
Q psy4576         365 ETSHTCHLCPQKFRQRSSYTLHYKTHHPGV  394 (400)
Q Consensus       365 ~~~~~C~~C~~~f~~~~~l~~H~~~hh~~~  394 (400)
                      ++||.|++|+..|..+..+.-|+++|-+++
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg~v   30 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGSV   30 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCCC
T ss_pred             CCCcccchHHHHhhccccceEeeecccCcc
Confidence            466777777777777777777777766654

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=2.3e-07  Score=44.00  Aligned_cols=24  Identities=25%  Similarity=0.729  Sum_probs=12.9

Q ss_pred             ccCCCCccccCCchHHHHHHhhhC
Q psy4576         368 HTCHLCPQKFRQRSSYTLHYKTHH  391 (400)
Q Consensus       368 ~~C~~C~~~f~~~~~l~~H~~~hh  391 (400)
                      .+|+.|++.|+.+..|..|+|.|.
T Consensus         2 hkc~~c~kcfsrkdklk~hmr~ht   25 (26)
T d2dmda2           2 HKCEVCGKCFSRKDKLKTHMRCHT   25 (26)
T ss_dssp             CCBTTTTBCCCCHHHHHHHGGGCC
T ss_pred             CccchhhhHhcchhHHHHHhhccC
Confidence            445555555555555555555544

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=3.3e-07  Score=44.66  Aligned_cols=27  Identities=37%  Similarity=0.790  Sum_probs=15.0

Q ss_pred             CCeecccccccccChhhHHHHHhhcCC
Q psy4576         338 KPHCCEICGRSYSTAAYLKVHMSCHTG  364 (400)
Q Consensus       338 ~~~~C~~C~~~f~~~~~L~~H~~~h~~  364 (400)
                      +||+|.+|.+.-...++|..|++.|+|
T Consensus         2 rpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           2 RPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CcceeeecccccCCchheEEeeecccC
Confidence            455555555555555555555555554

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=3.1e-07  Score=43.59  Aligned_cols=26  Identities=58%  Similarity=1.256  Sum_probs=20.5

Q ss_pred             CeecccccccccChhhHHHHHhhcCC
Q psy4576         339 PHCCEICGRSYSTAAYLKVHMSCHTG  364 (400)
Q Consensus       339 ~~~C~~C~~~f~~~~~L~~H~~~h~~  364 (400)
                      |.+|+.|++.|+.+..|..|++.|+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            46788888888888888888888765

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=3.6e-07  Score=44.50  Aligned_cols=29  Identities=31%  Similarity=0.687  Sum_probs=27.2

Q ss_pred             CCcccCCCCccccCCchHHHHHHhhhCCC
Q psy4576         365 ETSHTCHLCPQKFRQRSSYTLHYKTHHPG  393 (400)
Q Consensus       365 ~~~~~C~~C~~~f~~~~~l~~H~~~hh~~  393 (400)
                      ++||+|.+|++.....++|..|++.|.++
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             CCcceeeecccccCCchheEEeeecccCc
Confidence            57999999999999999999999999875

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=4.3e-07  Score=46.43  Aligned_cols=31  Identities=35%  Similarity=0.663  Sum_probs=23.3

Q ss_pred             CCeecccccccccChhhHHHHHhhcCCCCcc
Q psy4576         338 KPHCCEICGRSYSTAAYLKVHMSCHTGETSH  368 (400)
Q Consensus       338 ~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~  368 (400)
                      +...|.+||+.|.+...|.+|...|++++||
T Consensus         4 k~~~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            4456777777777777777777777777776

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.21  E-value=3.7e-07  Score=44.91  Aligned_cols=26  Identities=31%  Similarity=0.655  Sum_probs=15.5

Q ss_pred             CCcccCCCCccccCCchHHHHHHhhh
Q psy4576         365 ETSHTCHLCPQKFRQRSSYTLHYKTH  390 (400)
Q Consensus       365 ~~~~~C~~C~~~f~~~~~l~~H~~~h  390 (400)
                      ++||.|.+||+.|.......+|.++|
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhc
Confidence            35566666666666666666665554

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.21  E-value=4.7e-07  Score=44.56  Aligned_cols=27  Identities=37%  Similarity=0.762  Sum_probs=25.1

Q ss_pred             CCCeecccccccccChhhHHHHHhhcC
Q psy4576         337 LKPHCCEICGRSYSTAAYLKVHMSCHT  363 (400)
Q Consensus       337 ~~~~~C~~C~~~f~~~~~L~~H~~~h~  363 (400)
                      ++||.|.+||+.|.......+|.++|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            589999999999999999999999985

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=7.8e-07  Score=44.35  Aligned_cols=29  Identities=28%  Similarity=0.693  Sum_probs=23.7

Q ss_pred             CCCeecccccccccChhhHHHHHhhcCCC
Q psy4576         337 LKPHCCEICGRSYSTAAYLKVHMSCHTGE  365 (400)
Q Consensus       337 ~~~~~C~~C~~~f~~~~~L~~H~~~h~~~  365 (400)
                      ++||.|++|+..|..+..+..|++.|.|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCCcccchHHHHhhccccceEeeecccCc
Confidence            47888888888888888888888888764

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=1.8e-06  Score=43.18  Aligned_cols=27  Identities=33%  Similarity=0.620  Sum_probs=16.4

Q ss_pred             CcccCCC--CccccCCchHHHHHHhhhCC
Q psy4576         366 TSHTCHL--CPQKFRQRSSYTLHYKTHHP  392 (400)
Q Consensus       366 ~~~~C~~--C~~~f~~~~~l~~H~~~hh~  392 (400)
                      +||.|.+  |++++...++|++|++++|+
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            3566655  66666666666666666554

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=4.6e-06  Score=41.63  Aligned_cols=27  Identities=30%  Similarity=0.769  Sum_probs=22.6

Q ss_pred             CCeeccc--ccccccChhhHHHHHhhcCC
Q psy4576         338 KPHCCEI--CGRSYSTAAYLKVHMSCHTG  364 (400)
Q Consensus       338 ~~~~C~~--C~~~f~~~~~L~~H~~~h~~  364 (400)
                      +||.|.+  |+++++.+++|+.|++.++|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            5888887  88999999999999887664

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=7.1e-06  Score=39.68  Aligned_cols=26  Identities=42%  Similarity=0.866  Sum_probs=17.5

Q ss_pred             eecccccccccChhhHHHHHhhcCCC
Q psy4576         340 HCCEICGRSYSTAAYLKVHMSCHTGE  365 (400)
Q Consensus       340 ~~C~~C~~~f~~~~~L~~H~~~h~~~  365 (400)
                      ..|..||++|...+.|.+|..+|+|+
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccCC
Confidence            45667777777777777777666654

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=6.8e-06  Score=39.60  Aligned_cols=26  Identities=27%  Similarity=0.591  Sum_probs=17.4

Q ss_pred             CCeecccccccccChhhHHHHHhhcC
Q psy4576         338 KPHCCEICGRSYSTAAYLKVHMSCHT  363 (400)
Q Consensus       338 ~~~~C~~C~~~f~~~~~L~~H~~~h~  363 (400)
                      +||+|..|++.-...++|..|+++|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            56666666666666666666666664

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=1e-05  Score=39.62  Aligned_cols=26  Identities=35%  Similarity=0.562  Sum_probs=12.1

Q ss_pred             eecccccccccChhhHHHHHhhcCCC
Q psy4576         340 HCCEICGRSYSTAAYLKVHMSCHTGE  365 (400)
Q Consensus       340 ~~C~~C~~~f~~~~~L~~H~~~h~~~  365 (400)
                      |.|+.||.....++.|..|++.|+++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~   27 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDV   27 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCC
Confidence            34444444444444444444444443

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=4.6e-06  Score=40.96  Aligned_cols=28  Identities=25%  Similarity=0.489  Sum_probs=23.0

Q ss_pred             CcccCCCCccccCCchHHHHHHhhhCCC
Q psy4576         366 TSHTCHLCPQKFRQRSSYTLHYKTHHPG  393 (400)
Q Consensus       366 ~~~~C~~C~~~f~~~~~l~~H~~~hh~~  393 (400)
                      +||+|..|.+...+.++|..|++..|++
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~D   28 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHGD   28 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHSS
T ss_pred             CCcccceecccccCcchHHHHHHHHccC
Confidence            4788888888888888888888887775

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=9.2e-06  Score=39.95  Aligned_cols=28  Identities=25%  Similarity=0.469  Sum_probs=24.5

Q ss_pred             CcccCCCCccccCCchHHHHHHhhhCCC
Q psy4576         366 TSHTCHLCPQKFRQRSSYTLHYKTHHPG  393 (400)
Q Consensus       366 ~~~~C~~C~~~f~~~~~l~~H~~~hh~~  393 (400)
                      +||+|.+|.+.....++|..|+++.|+.
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhsk   28 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHSK   28 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSS
T ss_pred             CCccccccccccccchhhhhhhhccccc
Confidence            5889999999999999999999988875

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=1.5e-05  Score=38.96  Aligned_cols=26  Identities=31%  Similarity=0.566  Sum_probs=15.5

Q ss_pred             CcccccccccCCHHHHHHHHHHhcCC
Q psy4576         312 PVCTICGKMLIDKRSLANHMNTHTGL  337 (400)
Q Consensus       312 ~~C~~C~~~f~~~~~l~~H~~~h~~~  337 (400)
                      |.|+.|+......+.|.+|+++|+++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~   27 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDV   27 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCC
Confidence            45666666666666666666666554

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=1.7e-05  Score=40.48  Aligned_cols=32  Identities=19%  Similarity=0.308  Sum_probs=29.3

Q ss_pred             CcccCCCCccccCCchHHHHHHhhhCCCCCCC
Q psy4576         366 TSHTCHLCPQKFRQRSSYTLHYKTHHPGVIPP  397 (400)
Q Consensus       366 ~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~~~  397 (400)
                      +...|.+||+.|.....|.+|.-+|.+++|+.
T Consensus         4 k~~~ce~cgk~frdvyhlnrhklshs~ekpys   35 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYS   35 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGSCSCCCCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcccCCCCCCC
Confidence            45689999999999999999999999999974

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=1.8e-05  Score=38.09  Aligned_cols=26  Identities=23%  Similarity=0.416  Sum_probs=24.7

Q ss_pred             CcccCCCCccccCCchHHHHHHhhhC
Q psy4576         366 TSHTCHLCPQKFRQRSSYTLHYKTHH  391 (400)
Q Consensus       366 ~~~~C~~C~~~f~~~~~l~~H~~~hh  391 (400)
                      +||+|..|.++-...++|.+|+|+|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            79999999999999999999999985

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.61  E-value=1.9e-05  Score=37.52  Aligned_cols=24  Identities=46%  Similarity=0.876  Sum_probs=11.9

Q ss_pred             cccccccccChhhHHHHHhhcCCC
Q psy4576         342 CEICGRSYSTAAYLKVHMSCHTGE  365 (400)
Q Consensus       342 C~~C~~~f~~~~~L~~H~~~h~~~  365 (400)
                      |+.|.++|.++..|..|-+.|+|+
T Consensus         3 cp~c~k~f~skyylkvhnr~htge   26 (27)
T d2dlqa4           3 CPTCHKKFLSKYYLKVHNRKHTGE   26 (27)
T ss_dssp             CTTTCCCCSSHHHHHHHHHHHSSC
T ss_pred             CcchHHHHHHhHhhhhccccccCC
Confidence            444555555555555554444444

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=1.5e-05  Score=38.97  Aligned_cols=24  Identities=25%  Similarity=0.589  Sum_probs=20.0

Q ss_pred             cccCCCCccccCCchHHHHHHhhh
Q psy4576         367 SHTCHLCPQKFRQRSSYTLHYKTH  390 (400)
Q Consensus       367 ~~~C~~C~~~f~~~~~l~~H~~~h  390 (400)
                      ||.|..|+++|.++.+|.+||++.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSK   24 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSK   24 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSS
T ss_pred             CcccceeeeeEeeccchhHhhhhh
Confidence            688888888888888888888763

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.53  E-value=3.2e-05  Score=36.11  Aligned_cols=23  Identities=30%  Similarity=0.602  Sum_probs=11.0

Q ss_pred             eecccccccccChhhHHHHHhhc
Q psy4576         340 HCCEICGRSYSTAAYLKVHMSCH  362 (400)
Q Consensus       340 ~~C~~C~~~f~~~~~L~~H~~~h  362 (400)
                      |+|..|.++|..++.|.+|+++|
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            34444444444444444444444

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.51  E-value=2.6e-05  Score=39.22  Aligned_cols=27  Identities=30%  Similarity=0.604  Sum_probs=20.1

Q ss_pred             cccCCCCccccCCchHHHHHHhhhCCC
Q psy4576         367 SHTCHLCPQKFRQRSSYTLHYKTHHPG  393 (400)
Q Consensus       367 ~~~C~~C~~~f~~~~~l~~H~~~hh~~  393 (400)
                      ||.|.+|++.|+.+.-|.+|+..-|++
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g   27 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSG   27 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcC
Confidence            577777777777777777777766654

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.47  E-value=4.2e-05  Score=35.70  Aligned_cols=24  Identities=29%  Similarity=0.697  Sum_probs=22.6

Q ss_pred             ccCCCCccccCCchHHHHHHhhhC
Q psy4576         368 HTCHLCPQKFRQRSSYTLHYKTHH  391 (400)
Q Consensus       368 ~~C~~C~~~f~~~~~l~~H~~~hh  391 (400)
                      |+|..|.++|..++.|.+|++.|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            789999999999999999999875

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=4.8e-05  Score=41.14  Aligned_cols=24  Identities=29%  Similarity=0.710  Sum_probs=11.8

Q ss_pred             CCCcccCCCCccccCCchHHHHHH
Q psy4576         364 GETSHTCHLCPQKFRQRSSYTLHY  387 (400)
Q Consensus       364 ~~~~~~C~~C~~~f~~~~~l~~H~  387 (400)
                      |.+||.|.+|++.|..+.++.+|.
T Consensus         2 GiKPYeC~~C~KrFMWRDSF~RH~   25 (44)
T d2csha2           2 GIKPYECNICAKRFMWRDSFHRHV   25 (44)
T ss_dssp             CCCCEECSSSCCEESCHHHHHHHH
T ss_pred             CCCceeccchhhhhhhHHHHHHhh
Confidence            344555555555555555555443

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=4.6e-05  Score=41.24  Aligned_cols=26  Identities=31%  Similarity=0.712  Sum_probs=23.5

Q ss_pred             cCCCCeecccccccccChhhHHHHHh
Q psy4576         335 TGLKPHCCEICGRSYSTAAYLKVHMS  360 (400)
Q Consensus       335 ~~~~~~~C~~C~~~f~~~~~L~~H~~  360 (400)
                      +|-+||.|.+|++.|....++.+|..
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhh
Confidence            46799999999999999999999963

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.37  E-value=6.5e-05  Score=35.67  Aligned_cols=26  Identities=23%  Similarity=0.499  Sum_probs=24.4

Q ss_pred             cCCCCccccCCchHHHHHHhhhCCCC
Q psy4576         369 TCHLCPQKFRQRSSYTLHYKTHHPGV  394 (400)
Q Consensus       369 ~C~~C~~~f~~~~~l~~H~~~hh~~~  394 (400)
                      +|+.|.+.|.++..|..|.|.|.+++
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            69999999999999999999999874

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=0.0001  Score=36.20  Aligned_cols=26  Identities=15%  Similarity=0.280  Sum_probs=12.5

Q ss_pred             ccccCcccccccChhHHHHHHhhhcC
Q psy4576          92 EERCRSCGLLSGSITQTYIHYLECKN  117 (400)
Q Consensus        92 ~~~C~~C~~~f~~~~~l~~H~~~~h~  117 (400)
                      ||+|..|.+.....+.|..|+...|.
T Consensus         2 py~cqyc~yrsadssnlkthiktkhs   27 (30)
T d1klra_           2 TYQCQYCEFRSADSSNLKTHIKTKHS   27 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTS
T ss_pred             Cccccccccccccchhhhhhhhcccc
Confidence            44455554444444445555444443

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.32  E-value=0.00011  Score=39.73  Aligned_cols=30  Identities=27%  Similarity=0.511  Sum_probs=18.4

Q ss_pred             CcccCCCCccccCCchHHHHHHhhhCCCCC
Q psy4576         366 TSHTCHLCPQKFRQRSSYTLHYKTHHPGVI  395 (400)
Q Consensus       366 ~~~~C~~C~~~f~~~~~l~~H~~~hh~~~~  395 (400)
                      +.|+|.+|++.|.+..+|-=|++.|..+..
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~~Hr~~r~   33 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMNVHRRDRA   33 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHTTCCSCT
T ss_pred             CccCCCCCCCccCCcccccchHhhhcchHH
Confidence            346666666666666666666666655443

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.27  E-value=8.3e-05  Score=36.18  Aligned_cols=24  Identities=29%  Similarity=0.533  Sum_probs=13.9

Q ss_pred             cccCCC--CccccCCchHHHHHHhhh
Q psy4576         367 SHTCHL--CPQKFRQRSSYTLHYKTH  390 (400)
Q Consensus       367 ~~~C~~--C~~~f~~~~~l~~H~~~h  390 (400)
                      ||+|+.  |++.|+..+.|.+|.+.|
T Consensus         3 py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           3 PYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CccCCccCccccccCHHHHhhhhhcc
Confidence            555554  666666666666665544

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=0.00011  Score=35.50  Aligned_cols=26  Identities=27%  Similarity=0.476  Sum_probs=23.8

Q ss_pred             ccCCCCccccCCchHHHHHHhhhCCC
Q psy4576         368 HTCHLCPQKFRQRSSYTLHYKTHHPG  393 (400)
Q Consensus       368 ~~C~~C~~~f~~~~~l~~H~~~hh~~  393 (400)
                      ..|..||++|...+.|.+|+-.|.++
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccCC
Confidence            57999999999999999999998864

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.00012  Score=35.75  Aligned_cols=23  Identities=39%  Similarity=0.833  Sum_probs=13.2

Q ss_pred             cccccccccccCChHHHHHHhhh
Q psy4576         121 LYECSLCNESFENKKVLFRHLRG  143 (400)
Q Consensus       121 ~~~C~~C~~~f~~~~~l~~H~~~  143 (400)
                      ||.|..|+..|.++.+|..||+.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            45555565566666666555554

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.14  E-value=0.00019  Score=34.90  Aligned_cols=25  Identities=32%  Similarity=0.804  Sum_probs=10.8

Q ss_pred             eecccccccccChhhHHHHHhhcCC
Q psy4576         340 HCCEICGRSYSTAAYLKVHMSCHTG  364 (400)
Q Consensus       340 ~~C~~C~~~f~~~~~L~~H~~~h~~  364 (400)
                      |.|..|...|...-.|+.||..|+|
T Consensus         5 ftcs~cqe~f~rrmelr~hmvshtg   29 (30)
T d2dlqa3           5 FTCSVCQETFRRRMELRLHMVSHTG   29 (30)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHHSS
T ss_pred             EEeHHHHHHHHHHHhheeeeecccC
Confidence            4444444444444444444444443

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.11  E-value=0.00016  Score=35.21  Aligned_cols=25  Identities=32%  Similarity=0.588  Sum_probs=20.7

Q ss_pred             CCeeccc--ccccccChhhHHHHHhhc
Q psy4576         338 KPHCCEI--CGRSYSTAAYLKVHMSCH  362 (400)
Q Consensus       338 ~~~~C~~--C~~~f~~~~~L~~H~~~h  362 (400)
                      .||+|+.  |++.|...+.|.+|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            4788875  888888888888888876

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.06  E-value=0.00016  Score=36.31  Aligned_cols=27  Identities=30%  Similarity=0.827  Sum_probs=18.4

Q ss_pred             ccccccccccccChhhHHHHHhhhcCC
Q psy4576         283 EFICDVCGKSYVRKGALTEHHQREHQG  309 (400)
Q Consensus       283 ~~~C~~C~~~f~~~~~l~~H~~~~h~~  309 (400)
                      ||.|.+|++.|.....|.+|.++.|.+
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g   27 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSG   27 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcC
Confidence            466777777777777777776666654

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.02  E-value=0.00027  Score=38.07  Aligned_cols=27  Identities=30%  Similarity=0.623  Sum_probs=14.1

Q ss_pred             CCeecccccccccChhhHHHHHhhcCC
Q psy4576         338 KPHCCEICGRSYSTAAYLKVHMSCHTG  364 (400)
Q Consensus       338 ~~~~C~~C~~~f~~~~~L~~H~~~h~~  364 (400)
                      +.|+|.+|++.|.+..+|--|++.|..
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~~Hr~   30 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMNVHRR   30 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHTTCC
T ss_pred             CccCCCCCCCccCCcccccchHhhhcc
Confidence            345555555555555555555555543

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.00016  Score=36.26  Aligned_cols=25  Identities=28%  Similarity=0.567  Sum_probs=15.9

Q ss_pred             CcccCCC--CccccCCchHHHHHH-hhh
Q psy4576         366 TSHTCHL--CPQKFRQRSSYTLHY-KTH  390 (400)
Q Consensus       366 ~~~~C~~--C~~~f~~~~~l~~H~-~~h  390 (400)
                      +||.|.+  |.++|+..++-.+|+ |+|
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTH   28 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTH   28 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTT
T ss_pred             CCccccCCChhhhhcchhhhhhhccccc
Confidence            4666665  666666666666665 444

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.00025  Score=34.70  Aligned_cols=27  Identities=22%  Similarity=0.602  Sum_probs=17.3

Q ss_pred             CcccccccccccCChHHHHHHhhhhcC
Q psy4576         120 KLYECSLCNESFENKKVLFRHLRGKHG  146 (400)
Q Consensus       120 ~~~~C~~C~~~f~~~~~l~~H~~~~h~  146 (400)
                      +||+|..|..-.+..++|..|++..|+
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCcccceecccccCcchHHHHHHHHcc
Confidence            356666666666666666666666554

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.00022  Score=35.82  Aligned_cols=28  Identities=36%  Similarity=0.670  Sum_probs=22.7

Q ss_pred             CCeeccc--ccccccChhhHHHHH-hhcCCC
Q psy4576         338 KPHCCEI--CGRSYSTAAYLKVHM-SCHTGE  365 (400)
Q Consensus       338 ~~~~C~~--C~~~f~~~~~L~~H~-~~h~~~  365 (400)
                      +||.|..  |.++|+..+.-..|+ |+|..+
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~e   31 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSNE   31 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCSC
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccCC
Confidence            5888887  899999888888887 777653

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.82  E-value=0.00055  Score=33.26  Aligned_cols=29  Identities=34%  Similarity=0.697  Sum_probs=26.4

Q ss_pred             CCcccCCCCccccCCchHHHHHHhhhCCC
Q psy4576         365 ETSHTCHLCPQKFRQRSSYTLHYKTHHPG  393 (400)
Q Consensus       365 ~~~~~C~~C~~~f~~~~~l~~H~~~hh~~  393 (400)
                      +..|.|..|...|..+-.|+.||.+|.++
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            45699999999999999999999999874

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.81  E-value=0.00031  Score=34.26  Aligned_cols=27  Identities=33%  Similarity=0.673  Sum_probs=15.4

Q ss_pred             CCeeccc--ccccccChhhHHHHHhhcCC
Q psy4576         338 KPHCCEI--CGRSYSTAAYLKVHMSCHTG  364 (400)
Q Consensus       338 ~~~~C~~--C~~~f~~~~~L~~H~~~h~~  364 (400)
                      +||.|..  |.+.|.+.-.|.+|..+|+|
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtg   29 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTG   29 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHT
T ss_pred             CCcCcccccccccchhhhhhhhhhccccC
Confidence            3555543  56666666666666555554

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.0011  Score=31.94  Aligned_cols=24  Identities=38%  Similarity=0.667  Sum_probs=13.9

Q ss_pred             CeecccccccccChhhHHHHHhhc
Q psy4576         339 PHCCEICGRSYSTAAYLKVHMSCH  362 (400)
Q Consensus       339 ~~~C~~C~~~f~~~~~L~~H~~~h  362 (400)
                      |-+|+.|.++.+++..|+.|.++|
T Consensus         2 pekc~ecsyscsskaalrvh~rih   25 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIH   25 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGG
T ss_pred             CccCcccccccCcHHHHHHhhccc
Confidence            345556666666666666665555

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.54  E-value=0.00081  Score=31.39  Aligned_cols=24  Identities=29%  Similarity=0.632  Sum_probs=16.9

Q ss_pred             ccCCCCccccCCchHHHHHHhhhC
Q psy4576         368 HTCHLCPQKFRQRSSYTLHYKTHH  391 (400)
Q Consensus       368 ~~C~~C~~~f~~~~~l~~H~~~hh  391 (400)
                      |.|+.|-+.|+.+.++..|.++-|
T Consensus         2 ypcp~cfkeftrkdnm~ahvkiih   25 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKIIH   25 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHT
T ss_pred             cCCchhhHHhccccCceEEEEEec
Confidence            667777777777777777776654

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.48  E-value=0.00092  Score=31.07  Aligned_cols=22  Identities=27%  Similarity=0.554  Sum_probs=12.2

Q ss_pred             cccCCCCccccCCchHHHHHHh
Q psy4576         367 SHTCHLCPQKFRQRSSYTLHYK  388 (400)
Q Consensus       367 ~~~C~~C~~~f~~~~~l~~H~~  388 (400)
                      ||+|.-|...|..+.+|..|+-
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            4555555555555555555553

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.45  E-value=0.00098  Score=30.97  Aligned_cols=21  Identities=43%  Similarity=0.820  Sum_probs=10.4

Q ss_pred             ccccccccccCChHHHHHHhh
Q psy4576         122 YECSLCNESFENKKVLFRHLR  142 (400)
Q Consensus       122 ~~C~~C~~~f~~~~~l~~H~~  142 (400)
                      |+|..|...|-.+.+|..||.
T Consensus         3 ykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           3 YKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             EECSSSCCEESSHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHHHH
Confidence            445555555555555555443

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.001  Score=35.44  Aligned_cols=26  Identities=23%  Similarity=0.568  Sum_probs=12.9

Q ss_pred             CCcccC--CCCccccCCchHHHHHHhhh
Q psy4576         365 ETSHTC--HLCPQKFRQRSSYTLHYKTH  390 (400)
Q Consensus       365 ~~~~~C--~~C~~~f~~~~~l~~H~~~h  390 (400)
                      ++||.|  +-|+.+|.+...|..|...|
T Consensus         4 dkPF~C~~pGC~q~F~neDhL~vHk~KH   31 (38)
T d1bhia_           4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH   31 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred             CCceecCCCCccccccchHHHHHhhhhh
Confidence            445555  23555555555555554444

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.32  E-value=0.0016  Score=31.32  Aligned_cols=26  Identities=15%  Similarity=0.470  Sum_probs=23.5

Q ss_pred             cccCCCCccccCCchHHHHHHhhhCC
Q psy4576         367 SHTCHLCPQKFRQRSSYTLHYKTHHP  392 (400)
Q Consensus       367 ~~~C~~C~~~f~~~~~l~~H~~~hh~  392 (400)
                      |-+|+.|.++.+++..|+.|.|.|-.
T Consensus         2 pekc~ecsyscsskaalrvh~rihc~   27 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHCT   27 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGCC
T ss_pred             CccCcccccccCcHHHHHHhhccccC
Confidence            56899999999999999999999854

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.0014  Score=34.91  Aligned_cols=28  Identities=32%  Similarity=0.599  Sum_probs=22.6

Q ss_pred             CCCCeec--ccccccccChhhHHHHHhhcC
Q psy4576         336 GLKPHCC--EICGRSYSTAAYLKVHMSCHT  363 (400)
Q Consensus       336 ~~~~~~C--~~C~~~f~~~~~L~~H~~~h~  363 (400)
                      .++||.|  +-|+.+|.+...|..|...|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            4688888  558889999988888887764

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.04  E-value=0.0023  Score=30.63  Aligned_cols=25  Identities=20%  Similarity=0.551  Sum_probs=18.3

Q ss_pred             cccCCCCccccCCchHHHHHHhhhC
Q psy4576         367 SHTCHLCPQKFRQRSSYTLHYKTHH  391 (400)
Q Consensus       367 ~~~C~~C~~~f~~~~~l~~H~~~hh  391 (400)
                      .|+|+.|+-....+++|..|++.-|
T Consensus         2 k~qcphc~tiiarksdlrvhlrnlh   26 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRKQH   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHTS
T ss_pred             CccCCcchhheeehhhhhHHhhhcc
Confidence            3677777777777777777777655

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.96  E-value=0.002  Score=30.75  Aligned_cols=22  Identities=14%  Similarity=0.351  Sum_probs=18.3

Q ss_pred             cccCCCCccccCCchHHHHHHh
Q psy4576         367 SHTCHLCPQKFRQRSSYTLHYK  388 (400)
Q Consensus       367 ~~~C~~C~~~f~~~~~l~~H~~  388 (400)
                      ||+|..||+.+-.+.+|..|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            6888888888888888888864

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.88  E-value=0.0022  Score=31.21  Aligned_cols=28  Identities=25%  Similarity=0.402  Sum_probs=24.7

Q ss_pred             CcccCCC--CccccCCchHHHHHHhhhCCC
Q psy4576         366 TSHTCHL--CPQKFRQRSSYTLHYKTHHPG  393 (400)
Q Consensus       366 ~~~~C~~--C~~~f~~~~~l~~H~~~hh~~  393 (400)
                      +||.|..  |.+.|.+...|.+|..+|.++
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            5889976  999999999999999998764

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.61  E-value=0.0027  Score=35.53  Aligned_cols=26  Identities=27%  Similarity=0.569  Sum_probs=21.0

Q ss_pred             CCeecccccccccChhhHHHHHhhcC
Q psy4576         338 KPHCCEICGRSYSTAAYLKVHMSCHT  363 (400)
Q Consensus       338 ~~~~C~~C~~~f~~~~~L~~H~~~h~  363 (400)
                      .-|.|.+|+|.|+....|+.|...|-
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             ceeeccccccccCCHHHHhHhHHhcC
Confidence            35788888888988888888877663

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.57  E-value=0.0037  Score=29.78  Aligned_cols=22  Identities=32%  Similarity=0.643  Sum_probs=19.4

Q ss_pred             CeecccccccccChhhHHHHHh
Q psy4576         339 PHCCEICGRSYSTAAYLKVHMS  360 (400)
Q Consensus       339 ~~~C~~C~~~f~~~~~L~~H~~  360 (400)
                      ||+|..||+.+-.+.+|..|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            6899999999999999998864

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.43  E-value=0.005  Score=29.42  Aligned_cols=19  Identities=21%  Similarity=0.592  Sum_probs=8.4

Q ss_pred             ccccccccccCHHHHHHhH
Q psy4576         159 VCHYCNRTFDSKAKIQEHI  177 (400)
Q Consensus       159 ~C~~C~~~f~~~~~l~~H~  177 (400)
                      .|+.|+.....+++|+.|+
T Consensus         4 qcphc~tiiarksdlrvhl   22 (28)
T d2ct1a1           4 HCPHCDTVIARKSDLGVHL   22 (28)
T ss_dssp             ECSSSSCEESSHHHHHHHH
T ss_pred             cCCcchhheeehhhhhHHh
Confidence            3444444444444444444

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.40  E-value=0.0048  Score=28.71  Aligned_cols=22  Identities=27%  Similarity=0.693  Sum_probs=11.7

Q ss_pred             ccccccccccCChHHHHHHhhh
Q psy4576         122 YECSLCNESFENKKVLFRHLRG  143 (400)
Q Consensus       122 ~~C~~C~~~f~~~~~l~~H~~~  143 (400)
                      |.|+.|-+.|..+.++..|.+.
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            4455555555555555555544

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.99  E-value=0.0065  Score=33.94  Aligned_cols=26  Identities=23%  Similarity=0.419  Sum_probs=23.3

Q ss_pred             CcccCCCCccccCCchHHHHHHhhhC
Q psy4576         366 TSHTCHLCPQKFRQRSSYTLHYKTHH  391 (400)
Q Consensus       366 ~~~~C~~C~~~f~~~~~l~~H~~~hh  391 (400)
                      ..|.|.+|++.|.....|+.|...|-
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             ceeeccccccccCCHHHHhHhHHhcC
Confidence            35899999999999999999988764

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.47  E-value=0.033  Score=26.98  Aligned_cols=24  Identities=33%  Similarity=0.829  Sum_probs=13.9

Q ss_pred             ccCCCCCCccCCHHHHHHHHHhhc
Q psy4576         187 YQCDFCGSQQRTKCRFYYHLRDKH  210 (400)
Q Consensus       187 ~~C~~C~~~f~~~~~l~~H~~~~~  210 (400)
                      |.|..||+...+...+..|+...|
T Consensus         3 ftc~hcgkqlks~~gmkyhvmadh   26 (30)
T d2ctda2           3 FTCHHCGKQLRSLAGMKYHVMANH   26 (30)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHHHHT
T ss_pred             eechhHHHHHhhccCceEEEeecc
Confidence            556666666666666666655444

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=94.45  E-value=0.013  Score=30.03  Aligned_cols=30  Identities=23%  Similarity=0.434  Sum_probs=23.1

Q ss_pred             cccccccCcccccccChhHHHHHHhhhcCC
Q psy4576          89 VWDEERCRSCGLLSGSITQTYIHYLECKNR  118 (400)
Q Consensus        89 ~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  118 (400)
                      ++..|+|.+|.+++...+.+-+|+...|..
T Consensus         5 g~~~yRC~~C~r~YTHISNFCRHyvtSHk~   34 (37)
T d2drpa1           5 GEHTYRCKVCSRVYTHISNFCRHYVTSHKR   34 (37)
T ss_dssp             ETTEEECTTTCCEESSHHHHHHHHHHHSSS
T ss_pred             cCcEEEeehhhHHHHHHHHHHHHHHhhccc
Confidence            445678888888888888888887777754

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.43  E-value=0.013  Score=29.85  Aligned_cols=25  Identities=20%  Similarity=0.507  Sum_probs=16.2

Q ss_pred             cccCCCCccccCCchHHHHHHhhhC
Q psy4576         367 SHTCHLCPQKFRQRSSYTLHYKTHH  391 (400)
Q Consensus       367 ~~~C~~C~~~f~~~~~l~~H~~~hh  391 (400)
                      .|.|..||+.|..+..+.+|-..-.
T Consensus         4 afvcskcgktftrrntm~rha~nc~   28 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCA   28 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCC
T ss_pred             eeeecccccchhcchHHHHHhhhcC
Confidence            3667777777777777777665443

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.15  E-value=0.019  Score=28.96  Aligned_cols=24  Identities=33%  Similarity=0.618  Sum_probs=16.0

Q ss_pred             CCCCcccCcCccccCCHHHHHHHH
Q psy4576         213 KPANLSCEFCSRIFTKKELLRSHL  236 (400)
Q Consensus       213 ~~~~~~C~~C~~~f~~~~~l~~H~  236 (400)
                      +|..|.|.-||..|++.+.|..|+
T Consensus         5 kparf~c~pcgirfss~stleahq   28 (36)
T d1y0jb1           5 KPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SCCCCBCTTTCCBCSCHHHHHHHT
T ss_pred             cccceeccccceeecChhHHHhhh
Confidence            455567777777777777776664

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.70  E-value=0.025  Score=27.13  Aligned_cols=19  Identities=37%  Similarity=0.686  Sum_probs=13.3

Q ss_pred             CccccCCchHHHHHHhhhC
Q psy4576         373 CPQKFRQRSSYTLHYKTHH  391 (400)
Q Consensus       373 C~~~f~~~~~l~~H~~~hh  391 (400)
                      |++.|...+.+++|+-+|-
T Consensus         9 C~K~Frd~saMRKHlhtHG   27 (28)
T d1ubdc1           9 CTKMFRDNSAMRKHLHTHG   27 (28)
T ss_dssp             CCCEESSHHHHHHHHGGGS
T ss_pred             HHHHhhchHHHHHHhhccC
Confidence            6777777777777776653

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.51  E-value=0.038  Score=26.73  Aligned_cols=28  Identities=25%  Similarity=0.574  Sum_probs=19.6

Q ss_pred             cccCCCCccccCCchHHHHHHhhhCCCC
Q psy4576         367 SHTCHLCPQKFRQRSSYTLHYKTHHPGV  394 (400)
Q Consensus       367 ~~~C~~C~~~f~~~~~l~~H~~~hh~~~  394 (400)
                      .|.|..||+...+...+.-|+..-|+..
T Consensus         2 ~ftc~hcgkqlks~~gmkyhvmadhn~~   29 (30)
T d2ctda2           2 MFTCHHCGKQLRSLAGMKYHVMANHNSL   29 (30)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTCCC
T ss_pred             ceechhHHHHHhhccCceEEEeecccCC
Confidence            3677777777777777777776666544

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.37  E-value=0.044  Score=27.87  Aligned_cols=25  Identities=20%  Similarity=0.537  Sum_probs=14.0

Q ss_pred             CcccCcCccccCCHHHHHHHHHHcC
Q psy4576         216 NLSCEFCSRIFTKKELLRSHLAVHK  240 (400)
Q Consensus       216 ~~~C~~C~~~f~~~~~l~~H~~~h~  240 (400)
                      .|.|..|++.|.....+.+|.....
T Consensus         4 afvcskcgktftrrntm~rha~nc~   28 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCA   28 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCC
T ss_pred             eeeecccccchhcchHHHHHhhhcC
Confidence            3556666666666665555554443

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.23  E-value=0.022  Score=28.69  Aligned_cols=22  Identities=23%  Similarity=0.401  Sum_probs=16.0

Q ss_pred             cccCCCCccccCCchHHHHHHh
Q psy4576         367 SHTCHLCPQKFRQRSSYTLHYK  388 (400)
Q Consensus       367 ~~~C~~C~~~f~~~~~l~~H~~  388 (400)
                      .|.|+-||-.|++.+.|..|+.
T Consensus         8 rf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           8 RFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCBCTTTCCBCSCHHHHHHHTT
T ss_pred             ceeccccceeecChhHHHhhhh
Confidence            4777777777777777777763

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.11  E-value=0.02  Score=29.69  Aligned_cols=19  Identities=47%  Similarity=0.712  Sum_probs=10.3

Q ss_pred             ccccChhhHHHHHhhcCCC
Q psy4576         347 RSYSTAAYLKVHMSCHTGE  365 (400)
Q Consensus       347 ~~f~~~~~L~~H~~~h~~~  365 (400)
                      +.|.....|..|+|+|+||
T Consensus        15 ~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          15 RPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CCCSSHHHHHHHTHHHHCC
T ss_pred             CcchhHHHHHHHHhhcCCC
Confidence            3455555555555555553

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=92.93  E-value=0.029  Score=28.69  Aligned_cols=27  Identities=30%  Similarity=0.711  Sum_probs=16.5

Q ss_pred             CCcccCCCCccccCCchHHHHHHhhhC
Q psy4576         365 ETSHTCHLCPQKFRQRSSYTLHYKTHH  391 (400)
Q Consensus       365 ~~~~~C~~C~~~f~~~~~l~~H~~~hh  391 (400)
                      +..|+|.+|.+.++.-+++-+|.-+-|
T Consensus         6 ~~~yRC~~C~r~YTHISNFCRHyvtSH   32 (37)
T d2drpa1           6 EHTYRCKVCSRVYTHISNFCRHYVTSH   32 (37)
T ss_dssp             TTEEECTTTCCEESSHHHHHHHHHHHS
T ss_pred             CcEEEeehhhHHHHHHHHHHHHHHhhc
Confidence            345666666666666666666665544

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=92.71  E-value=0.039  Score=27.23  Aligned_cols=20  Identities=45%  Similarity=0.838  Sum_probs=8.3

Q ss_pred             ccccccChhhHHHHHhhcCC
Q psy4576         345 CGRSYSTAAYLKVHMSCHTG  364 (400)
Q Consensus       345 C~~~f~~~~~L~~H~~~h~~  364 (400)
                      |+..|.....|..|+-.|+|
T Consensus        11 C~A~ynk~wkL~AHLckHTG   30 (31)
T d1tf3a1          11 CGAAYNKNWKLQAHLSKHTG   30 (31)
T ss_dssp             GCCEESSHHHHHHHHHHHHC
T ss_pred             cchhhccchhhhHHhhhhcC
Confidence            44444444444444444433

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.73  E-value=0.047  Score=28.23  Aligned_cols=24  Identities=29%  Similarity=0.362  Sum_probs=17.7

Q ss_pred             ccccccccCCHHHHHHHHHHhcCC
Q psy4576         314 CTICGKMLIDKRSLANHMNTHTGL  337 (400)
Q Consensus       314 C~~C~~~f~~~~~l~~H~~~h~~~  337 (400)
                      |+-=++.|.....|..||+.|+|+
T Consensus        10 C~R~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          10 CSRELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CTTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             CCCCCCcchhHHHHHHHHhhcCCC
Confidence            444455688888888888888875

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.37  E-value=0.047  Score=33.23  Aligned_cols=37  Identities=11%  Similarity=0.422  Sum_probs=23.7

Q ss_pred             CCCeecccccccccChhhHHHHHhhcCCCCcccCCCCccc
Q psy4576         337 LKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQK  376 (400)
Q Consensus       337 ~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~  376 (400)
                      ...|.|+.|+++|+....+.-   .-.....|.|.+|+-.
T Consensus        12 ~~~y~Cp~C~~~ys~Lda~~L---~d~~~~~F~C~~C~~e   48 (62)
T d1vd4a_          12 RASFKCPVCSSTFTDLEANQL---FDPMTGTFRCTFCHTE   48 (62)
T ss_dssp             SSEEECSSSCCEEEHHHHHHH---EETTTTEEBCSSSCCB
T ss_pred             CCceECCCCCCCcchhhHHHh---cCcCCCeEEecCCCCE
Confidence            345888888888876555443   3333455888888743

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=90.86  E-value=0.066  Score=26.38  Aligned_cols=28  Identities=14%  Similarity=0.382  Sum_probs=24.2

Q ss_pred             CcccCCC--CccccCCchHHHHHHhhhCCC
Q psy4576         366 TSHTCHL--CPQKFRQRSSYTLHYKTHHPG  393 (400)
Q Consensus       366 ~~~~C~~--C~~~f~~~~~l~~H~~~hh~~  393 (400)
                      +.|.|..  |+..|.....|..|+-.|.++
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             CceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            4688865  999999999999999988764

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=90.44  E-value=0.087  Score=24.80  Aligned_cols=23  Identities=26%  Similarity=0.748  Sum_probs=14.7

Q ss_pred             ccCCC--CccccCCchHHHHHHhhh
Q psy4576         368 HTCHL--CPQKFRQRSSYTLHYKTH  390 (400)
Q Consensus       368 ~~C~~--C~~~f~~~~~l~~H~~~h  390 (400)
                      |.|..  |+++|..-..|..|+-+|
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~h   26 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSH   26 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeecc
Confidence            44533  777777777777776655

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=89.80  E-value=0.16  Score=28.10  Aligned_cols=25  Identities=28%  Similarity=0.545  Sum_probs=11.9

Q ss_pred             cccCCCCccccCCchHHHHHHhhhC
Q psy4576         367 SHTCHLCPQKFRQRSSYTLHYKTHH  391 (400)
Q Consensus       367 ~~~C~~C~~~f~~~~~l~~H~~~hh  391 (400)
                      |-.|++|+.......+|++|+..-|
T Consensus        24 patcpic~avirqsrnlrrhlel~h   48 (54)
T d1yuja_          24 PATCPICYAVIRQSRNLRRHLELRH   48 (54)
T ss_dssp             CEECTTTCCEESSHHHHHHHHHHHT
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHh
Confidence            4444444444444444555444443

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.41  E-value=0.073  Score=32.36  Aligned_cols=37  Identities=11%  Similarity=0.337  Sum_probs=25.3

Q ss_pred             ccccccCcccccccChhHHHHHHhhhcCCCCcccccccccc
Q psy4576          90 WDEERCRSCGLLSGSITQTYIHYLECKNRGKLYECSLCNES  130 (400)
Q Consensus        90 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~  130 (400)
                      ...|.||.|+++|....++.    -.-.....|.|..|+..
T Consensus        12 ~~~y~Cp~C~~~ys~Lda~~----L~d~~~~~F~C~~C~~e   48 (62)
T d1vd4a_          12 RASFKCPVCSSTFTDLEANQ----LFDPMTGTFRCTFCHTE   48 (62)
T ss_dssp             SSEEECSSSCCEEEHHHHHH----HEETTTTEEBCSSSCCB
T ss_pred             CCceECCCCCCCcchhhHHH----hcCcCCCeEEecCCCCE
Confidence            34588999998887766552    23344567888888754

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.27  E-value=0.053  Score=33.62  Aligned_cols=24  Identities=29%  Similarity=0.576  Sum_probs=18.7

Q ss_pred             CCeecccccccccChhhHHHHHhh
Q psy4576         338 KPHCCEICGRSYSTAAYLKVHMSC  361 (400)
Q Consensus       338 ~~~~C~~C~~~f~~~~~L~~H~~~  361 (400)
                      ..|.|..|++.|.+...|..|+++
T Consensus        14 gqfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          14 GLHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             GCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CEEecccccCccCCHHHHHHHHcc
Confidence            457888888888888888888753

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.24  E-value=0.14  Score=24.53  Aligned_cols=18  Identities=22%  Similarity=0.645  Sum_probs=11.4

Q ss_pred             cccccCChHHHHHHhhhh
Q psy4576         127 CNESFENKKVLFRHLRGK  144 (400)
Q Consensus       127 C~~~f~~~~~l~~H~~~~  144 (400)
                      |++.|.+.+.++.|+.+|
T Consensus         9 C~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           9 CTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             CCCEESSHHHHHHHHGGG
T ss_pred             HHHHhhchHHHHHHhhcc
Confidence            666666666666666554

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.18  E-value=0.092  Score=28.19  Aligned_cols=26  Identities=31%  Similarity=0.669  Sum_probs=17.4

Q ss_pred             CCeecccccccccChhhHHHHHhhcCCCCcccCCCCccc
Q psy4576         338 KPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQK  376 (400)
Q Consensus       338 ~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~  376 (400)
                      +.|.|.+||..+.             |+.|-.|++|+..
T Consensus         4 ~~~~C~vCG~i~~-------------g~~P~~CPvCg~~   29 (37)
T d1nnqa2           4 KVYICPICGYTAV-------------DEAPEYCPVCGAP   29 (37)
T ss_dssp             CEEECTTTCCEEE-------------SCCCSBCTTTCCB
T ss_pred             cEEECCCCCCEec-------------CCCCCcCCCCCCc
Confidence            4577888886542             4566778888753

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=88.80  E-value=0.2  Score=27.70  Aligned_cols=25  Identities=24%  Similarity=0.485  Sum_probs=14.2

Q ss_pred             CCCeecccccccccChhhHHHHHhh
Q psy4576         337 LKPHCCEICGRSYSTAAYLKVHMSC  361 (400)
Q Consensus       337 ~~~~~C~~C~~~f~~~~~L~~H~~~  361 (400)
                      +.|-.|++|+....+..+|.+|+..
T Consensus        22 ~qpatcpic~avirqsrnlrrhlel   46 (54)
T d1yuja_          22 EQPATCPICYAVIRQSRNLRRHLEL   46 (54)
T ss_dssp             SCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             cCCCCCchHHHHHHHHHHHHHHHHH
Confidence            3455566666666666666666543

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=87.47  E-value=0.25  Score=23.75  Aligned_cols=26  Identities=23%  Similarity=0.625  Sum_probs=19.3

Q ss_pred             cccCC--CCccccCCchHHHHHHhhhCC
Q psy4576         367 SHTCH--LCPQKFRQRSSYTLHYKTHHP  392 (400)
Q Consensus       367 ~~~C~--~C~~~f~~~~~l~~H~~~hh~  392 (400)
                      .|.|+  -|...|.++.++.+|....|.
T Consensus         2 nf~cdsd~cdl~fttkanmkkhfnrfhn   29 (31)
T d1tf3a3           2 NFTCDSDGCDLRFTTKANMKKHFNRFHN   29 (31)
T ss_dssp             CEECSSSSCCCEESSHHHHHHHHHHHTT
T ss_pred             CccccCCCcceEEeehHHHHHHHhhhcc
Confidence            36664  488888888888888877664

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.87  E-value=0.11  Score=32.23  Aligned_cols=21  Identities=29%  Similarity=0.537  Sum_probs=10.6

Q ss_pred             ccccccccccCChHHHHHHhh
Q psy4576         122 YECSLCNESFENKKVLFRHLR  142 (400)
Q Consensus       122 ~~C~~C~~~f~~~~~l~~H~~  142 (400)
                      |.|..|++.|.+...|..|++
T Consensus        16 fYCv~C~K~F~se~~l~~H~k   36 (67)
T d1zr9a1          16 HRCLACARYFIDSTNLKTHFR   36 (67)
T ss_dssp             SEETTTTEECSSHHHHHHHTT
T ss_pred             EecccccCccCCHHHHHHHHc
Confidence            445555555555555555544

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=84.92  E-value=0.24  Score=26.26  Aligned_cols=27  Identities=37%  Similarity=0.704  Sum_probs=16.7

Q ss_pred             CCCeecccccccccChhhHHHHHhhcCCCCcccCCCCccc
Q psy4576         337 LKPHCCEICGRSYSTAAYLKVHMSCHTGETSHTCHLCPQK  376 (400)
Q Consensus       337 ~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~  376 (400)
                      ++.|.|.+||...             .|+.|-+|++|+..
T Consensus         3 ~~~~vC~vCGyi~-------------~g~~Pe~CPvCg~~   29 (36)
T d1yuza2           3 DKFHLCPICGYIH-------------KGEDFEKCPICFRP   29 (36)
T ss_dssp             CCEEECSSSCCEE-------------ESSCCSBCTTTCCB
T ss_pred             CCEEECCCCCCEe-------------eCCCCCcCCCCCCc
Confidence            3457777777553             24456677777743

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.89  E-value=0.32  Score=29.03  Aligned_cols=24  Identities=21%  Similarity=0.367  Sum_probs=11.9

Q ss_pred             ccccCcccccccChhHHHHHHhhhc
Q psy4576          92 EERCRSCGLLSGSITQTYIHYLECK  116 (400)
Q Consensus        92 ~~~C~~C~~~f~~~~~l~~H~~~~h  116 (400)
                      .|+|.+|...|.+...|..| ...|
T Consensus        18 ~yQC~HCd~K~~s~~el~~h-l~~h   41 (75)
T d1x6fa1          18 TYQCKHCDSKLQSTAELTSH-LNIH   41 (75)
T ss_dssp             CEECSSSCCEESSHHHHHHH-HHHH
T ss_pred             eeeechhHHHHhhHHHHHHH-HHhc
Confidence            34555555555555555555 3344

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.55  E-value=0.47  Score=28.28  Aligned_cols=26  Identities=23%  Similarity=0.474  Sum_probs=16.4

Q ss_pred             CeecccccccccChhhHHHHHhhcCC
Q psy4576         339 PHCCEICGRSYSTAAYLKVHMSCHTG  364 (400)
Q Consensus       339 ~~~C~~C~~~f~~~~~L~~H~~~h~~  364 (400)
                      .|+|..|.-.|.+...|..|+..|..
T Consensus        18 ~yQC~HCd~K~~s~~el~~hl~~hne   43 (75)
T d1x6fa1          18 TYQCKHCDSKLQSTAELTSHLNIHNE   43 (75)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHH
T ss_pred             eeeechhHHHHhhHHHHHHHHHhccH
Confidence            46666666666666666666666653