Psyllid ID: psy4597

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110
Protein Sequence
MALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTVSLVGRIKSARADFILPTKLMG
Secondary Structure (PSIPRED)
cEEEEEccHHHHHHHHHHHHHHHHHcccccccccccccHHcccccHHHHHHHHHHcccEEEEEEcccccccHHHHHHHHHHHHHHHHHHcccccEEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEccHHHHHHHHHHHHHHHHHccccccccccccccHHHHEHHHHHHHHHHHccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHccccEcccccccEEcccHccc
Coil and Loop (DISEMBL)
mallvlgdpedvknneDKIYSIAKRyggipagesngrrgYMLTYIIAYIRDFACdyyfigdsfetsvpwdkTVLLCINVKKRLTRECTVSLVGRIksaradfilptklmg
Flexible Loop (DISEMBL)
mallvlgdpedvknnEDKIYSIakryggipagesngrRGYMLTYIIAYIRDFACDYYFIGDSfetsvpwdkTVLLCINvkkrltrectvslvgriksaradfilptklmg
Low Complexity Region (SEG)
MALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTVSLVGRIKSARADFILPTKLMG
Disordered region (IsUnstruct)
*****************KIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTVSLVGRIKSARADFIL******
Disordered Region (DISOPRED)
MALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTVSLVGRIKSARADFILPTKLM*
Disordered Region (DISEMBL)
MALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTVSLVGRIKSARADFILPTKLMG
Disordered Region (DISPRO)
MALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTVSLVGRIKSARADFILPT*L**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTVSLVGRIKSARADFILPTKLMG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	110	2.2.26 [Sep-21-2011]
O00116	658	Alkyldihydroxyacetonephos	yes	N/A	0.772	0.129	0.611	7e-28
Q8C0I1	645	Alkyldihydroxyacetonephos	yes	N/A	0.772	0.131	0.588	8e-27
P97275	658	Alkyldihydroxyacetonephos	yes	N/A	0.772	0.129	0.588	1e-26
Q9EQR2	644	Alkyldihydroxyacetonephos	yes	N/A	0.772	0.131	0.564	3e-26
Q9V778	631	Alkyldihydroxyacetonephos	yes	N/A	0.781	0.136	0.534	2e-22
O45218	597	Alkyldihydroxyacetonephos	yes	N/A	0.727	0.134	0.45	6e-17

>sp|O00116|ADAS_HUMAN Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Homo sapiens GN=AGPS PE=1 SV=1

 Score =  122 bits (306), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 52/85 (61%), Positives = 67/85 (78%)

Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+S
Sbjct: 468 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGES 527

Query: 63  FETSVPWDKTVLLCINVKKRLTREC 87
           FETS PWD+ V LC NVK+R+TREC
Sbjct: 528 FETSAPWDRVVDLCRNVKERITREC 552

Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 2EC: 6

>sp|Q8C0I1|ADAS_MOUSE Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Mus musculus GN=Agps PE=1 SV=1

 Score =  119 bits (297), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 50/85 (58%), Positives = 65/85 (76%)

Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD   +YY IG+S
Sbjct: 455 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLGLEYYVIGES 514

Query: 63  FETSVPWDKTVLLCINVKKRLTREC 87
           FETS PWD+ + LC NVK+R+ REC
Sbjct: 515 FETSAPWDRVIDLCRNVKERIRREC 539

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|P97275|ADAS_CAVPO Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Cavia porcellus GN=AGPS PE=1 SV=1

 Score =  118 bits (296), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 50/85 (58%), Positives = 65/85 (76%)

Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD   +YY IG+S
Sbjct: 468 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGES 527

Query: 63  FETSVPWDKTVLLCINVKKRLTREC 87
           FETS PWD+ V LC NVK+R+ REC
Sbjct: 528 FETSAPWDRVVDLCRNVKERIRREC 552

Cavia porcellus (taxid: 10141)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q9EQR2|ADAS_RAT Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Rattus norvegicus GN=Agps PE=2 SV=1

 Score =  117 bits (292), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 48/85 (56%), Positives = 65/85 (76%)

Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD   +YY +G+S
Sbjct: 454 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYVVGES 513

Query: 63  FETSVPWDKTVLLCINVKKRLTREC 87
           FETS PWD+ + LC NVK+R+ REC
Sbjct: 514 FETSAPWDRVIDLCRNVKERIRREC 538

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q9V778|ADAS_DROME Alkyldihydroxyacetonephosphate synthase OS=Drosophila melanogaster GN=CG10253 PE=2 SV=1

 Score =  104 bits (259), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 46/86 (53%), Positives = 61/86 (70%)

Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD +DV+  E  IY IA+++ G PAG  NG RGY+LT++IAYIRDF      + +S
Sbjct: 420 LLFEGDLKDVQRQEALIYEIAEKFQGFPAGGQNGERGYILTFVIAYIRDFGLHQGIVAES 479

Query: 63  FETSVPWDKTVLLCINVKKRLTRECT 88
           FETSVPWD+  LLC +VK+R+  EC+
Sbjct: 480 FETSVPWDRCSLLCRSVKQRVVSECS 505

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|O45218|ADAS_CAEEL Alkyldihydroxyacetonephosphate synthase OS=Caenorhabditis elegans GN=ads-1 PE=2 SV=1

 Score = 85.9 bits (211), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 36/80 (45%), Positives = 57/80 (71%)

Query: 7   GDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETS 66
           G+ E+V  +E+++  +A+++ G+  G  NG+ GY LT+ IAY+RD   ++  +G+SFETS
Sbjct: 401 GNREEVDQHEERLNKLAEQFHGVVGGAENGQYGYRLTFAIAYLRDLGMNHGVLGESFETS 460

Query: 67  VPWDKTVLLCINVKKRLTRE 86
           VPWDK + LC NVK+ + RE
Sbjct: 461 VPWDKVLSLCRNVKELMKRE 480

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	110
390464348	568	PREDICTED: alkyldihydroxyacetonephosphat	0.772	0.149	0.611	3e-26
390464346	652	PREDICTED: alkyldihydroxyacetonephosphat	0.772	0.130	0.611	3e-26
441668210	656	PREDICTED: alkyldihydroxyacetonephosphat	0.772	0.129	0.611	3e-26
426337844	626	PREDICTED: alkyldihydroxyacetonephosphat	0.772	0.135	0.611	3e-26
403258679	652	PREDICTED: alkyldihydroxyacetonephosphat	0.772	0.130	0.611	3e-26
402888755	660	PREDICTED: alkyldihydroxyacetonephosphat	0.772	0.128	0.611	3e-26
397489093	658	PREDICTED: alkyldihydroxyacetonephosphat	0.772	0.129	0.611	3e-26
380798535	631	alkyldihydroxyacetonephosphate synthase,	0.772	0.134	0.611	3e-26
355750655	584	hypothetical protein EGM_04101, partial	0.772	0.145	0.611	3e-26
355565004	550	hypothetical protein EGK_04575, partial	0.772	0.154	0.611	3e-26

>gi|390464348|ref|XP_003733208.1| PREDICTED: alkyldihydroxyacetonephosphate synthase, peroxisomal isoform 2 [Callithrix jacchus]

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/85 (61%), Positives = 67/85 (78%)

Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+S
Sbjct: 378 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGES 437

Query: 63  FETSVPWDKTVLLCINVKKRLTREC 87
           FETS PWD+ V LC NVK+R+TREC
Sbjct: 438 FETSAPWDRVVDLCKNVKERITREC 462

Source: Callithrix jacchus

Species: Callithrix jacchus

Genus: Callithrix

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|390464346|ref|XP_002749324.2| PREDICTED: alkyldihydroxyacetonephosphate synthase, peroxisomal isoform 1 [Callithrix jacchus]

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/85 (61%), Positives = 67/85 (78%)

Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+S
Sbjct: 462 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGES 521

Query: 63  FETSVPWDKTVLLCINVKKRLTREC 87
           FETS PWD+ V LC NVK+R+TREC
Sbjct: 522 FETSAPWDRVVDLCKNVKERITREC 546

Source: Callithrix jacchus

Species: Callithrix jacchus

Genus: Callithrix

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|441668210|ref|XP_003253813.2| PREDICTED: alkyldihydroxyacetonephosphate synthase, peroxisomal isoform 1 [Nomascus leucogenys]

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/85 (61%), Positives = 67/85 (78%)

Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+S
Sbjct: 466 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGES 525

Query: 63  FETSVPWDKTVLLCINVKKRLTREC 87
           FETS PWD+ V LC NVK+R+TREC
Sbjct: 526 FETSAPWDRVVDLCRNVKERITREC 550

Source: Nomascus leucogenys

Species: Nomascus leucogenys

Genus: Nomascus

Family: Hylobatidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|426337844|ref|XP_004032904.1| PREDICTED: alkyldihydroxyacetonephosphate synthase, peroxisomal [Gorilla gorilla gorilla]

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/85 (61%), Positives = 67/85 (78%)

Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+S
Sbjct: 436 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGES 495

Query: 63  FETSVPWDKTVLLCINVKKRLTREC 87
           FETS PWD+ V LC NVK+R+TREC
Sbjct: 496 FETSAPWDRVVDLCRNVKERITREC 520

Source: Gorilla gorilla gorilla

Species: Gorilla gorilla

Genus: Gorilla

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|403258679|ref|XP_003921880.1| PREDICTED: alkyldihydroxyacetonephosphate synthase, peroxisomal isoform 1 [Saimiri boliviensis boliviensis]

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/85 (61%), Positives = 67/85 (78%)

Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+S
Sbjct: 462 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGES 521

Query: 63  FETSVPWDKTVLLCINVKKRLTREC 87
           FETS PWD+ V LC NVK+R+TREC
Sbjct: 522 FETSAPWDRVVDLCRNVKERITREC 546

Source: Saimiri boliviensis boliviensis

Species: Saimiri boliviensis

Genus: Saimiri

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|402888755|ref|XP_003907714.1| PREDICTED: alkyldihydroxyacetonephosphate synthase, peroxisomal [Papio anubis]

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/85 (61%), Positives = 67/85 (78%)

Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+S
Sbjct: 470 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGES 529

Query: 63  FETSVPWDKTVLLCINVKKRLTREC 87
           FETS PWD+ V LC NVK+R+TREC
Sbjct: 530 FETSAPWDRVVDLCRNVKERITREC 554

Source: Papio anubis

Species: Papio anubis

Genus: Papio

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|397489093|ref|XP_003815571.1| PREDICTED: alkyldihydroxyacetonephosphate synthase, peroxisomal isoform 1 [Pan paniscus]

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/85 (61%), Positives = 67/85 (78%)

Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+S
Sbjct: 468 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGES 527

Query: 63  FETSVPWDKTVLLCINVKKRLTREC 87
           FETS PWD+ V LC NVK+R+TREC
Sbjct: 528 FETSAPWDRVVDLCRNVKERITREC 552

Source: Pan paniscus

Species: Pan paniscus

Genus: Pan

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|380798535|gb|AFE71143.1| alkyldihydroxyacetonephosphate synthase, peroxisomal precursor, partial [Macaca mulatta]

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/85 (61%), Positives = 67/85 (78%)

Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+S
Sbjct: 441 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGES 500

Query: 63  FETSVPWDKTVLLCINVKKRLTREC 87
           FETS PWD+ V LC NVK+R+TREC
Sbjct: 501 FETSAPWDRVVDLCRNVKERITREC 525

Source: Macaca mulatta

Species: Macaca mulatta

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|355750655|gb|EHH54982.1| hypothetical protein EGM_04101, partial [Macaca fascicularis]

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/85 (61%), Positives = 67/85 (78%)

Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+S
Sbjct: 394 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGES 453

Query: 63  FETSVPWDKTVLLCINVKKRLTREC 87
           FETS PWD+ V LC NVK+R+TREC
Sbjct: 454 FETSAPWDRVVDLCRNVKERITREC 478

Source: Macaca fascicularis

Species: Macaca fascicularis

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|355565004|gb|EHH21493.1| hypothetical protein EGK_04575, partial [Macaca mulatta]

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/85 (61%), Positives = 67/85 (78%)

Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+S
Sbjct: 360 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGES 419

Query: 63  FETSVPWDKTVLLCINVKKRLTREC 87
           FETS PWD+ V LC NVK+R+TREC
Sbjct: 420 FETSAPWDRVVDLCRNVKERITREC 444

Source: Macaca mulatta

Species: Macaca mulatta

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	110
UNIPROTKB|O00116	658	AGPS "Alkyldihydroxyacetonepho	0.772	0.129	0.611	5.1e-25
UNIPROTKB|E1BPV2	576	AGPS "Uncharacterized protein"	0.772	0.147	0.6	7.5e-25
UNIPROTKB|E2QVV9	653	AGPS "Uncharacterized protein"	0.772	0.130	0.6	1.1e-24
UNIPROTKB|F6Y1U6	663	AGPS "Uncharacterized protein"	0.772	0.128	0.6	1.1e-24
UNIPROTKB|J9NZ69	699	AGPS "Uncharacterized protein"	0.772	0.121	0.6	1.3e-24
UNIPROTKB|I3LM15	646	AGPS "Uncharacterized protein"	0.772	0.131	0.6	1.3e-24
UNIPROTKB|F1P5J7	638	AGPS "Uncharacterized protein"	0.772	0.133	0.6	1.7e-24
MGI|MGI:2443065	645	Agps "alkylglycerone phosphate	0.772	0.131	0.588	4.6e-24
UNIPROTKB|P97275	658	AGPS "Alkyldihydroxyacetonepho	0.772	0.129	0.588	6.2e-24
RGD|620364	644	Agps "alkylglycerone phosphate	0.772	0.131	0.564	1.2e-23

UNIPROTKB|O00116 AGPS "Alkyldihydroxyacetonephosphate synthase, peroxisomal" [Homo sapiens (taxid:9606)]

 Score = 293 (108.2 bits), Expect = 5.1e-25, P = 5.1e-25
 Identities = 52/85 (61%), Positives = 67/85 (78%)

Query:     3 LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
             LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+S
Sbjct:   468 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGES 527

Query:    63 FETSVPWDKTVLLCINVKKRLTREC 87
             FETS PWD+ V LC NVK+R+TREC
Sbjct:   528 FETSAPWDRVVDLCRNVKERITREC 552

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0008611 "ether lipid biosynthetic process" evidence=IEA;ISS;TAS

GO:0071949 "FAD binding" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IDA

GO:0005778 "peroxisomal membrane" evidence=IDA

GO:0008610 "lipid biosynthetic process" evidence=IDA

GO:0005782 "peroxisomal matrix" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|E1BPV2 AGPS "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 290 (107.1 bits), Expect = 7.5e-25, P = 7.5e-25
 Identities = 51/85 (60%), Positives = 66/85 (77%)

Query:     3 LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
             LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD   +YY +G+S
Sbjct:   386 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLGLEYYILGES 445

Query:    63 FETSVPWDKTVLLCINVKKRLTREC 87
             FETS PWD+ V LC NVK+R+TREC
Sbjct:   446 FETSAPWDRVVDLCRNVKERITREC 470

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

UNIPROTKB|E2QVV9 AGPS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 290 (107.1 bits), Expect = 1.1e-24, P = 1.1e-24
 Identities = 51/85 (60%), Positives = 66/85 (77%)

Query:     3 LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
             LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD   +YY +G+S
Sbjct:   463 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLGLEYYILGES 522

Query:    63 FETSVPWDKTVLLCINVKKRLTREC 87
             FETS PWD+ V LC NVK+R+TREC
Sbjct:   523 FETSAPWDRVVDLCRNVKERITREC 547

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IEA

UNIPROTKB|F6Y1U6 AGPS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 290 (107.1 bits), Expect = 1.1e-24, P = 1.1e-24
 Identities = 51/85 (60%), Positives = 66/85 (77%)

Query:     3 LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
             LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD   +YY +G+S
Sbjct:   473 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLGLEYYILGES 532

Query:    63 FETSVPWDKTVLLCINVKKRLTREC 87
             FETS PWD+ V LC NVK+R+TREC
Sbjct:   533 FETSAPWDRVVDLCRNVKERITREC 557

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IEA

UNIPROTKB|J9NZ69 AGPS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 290 (107.1 bits), Expect = 1.3e-24, P = 1.3e-24
 Identities = 51/85 (60%), Positives = 66/85 (77%)

Query:     3 LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
             LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD   +YY +G+S
Sbjct:   469 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLGLEYYILGES 528

Query:    63 FETSVPWDKTVLLCINVKKRLTREC 87
             FETS PWD+ V LC NVK+R+TREC
Sbjct:   529 FETSAPWDRVVDLCRNVKERITREC 553

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IEA

UNIPROTKB|I3LM15 AGPS "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 289 (106.8 bits), Expect = 1.3e-24, P = 1.3e-24
 Identities = 51/85 (60%), Positives = 66/85 (77%)

Query:     3 LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
             LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD   +YY +G+S
Sbjct:   496 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLGLEYYVLGES 555

Query:    63 FETSVPWDKTVLLCINVKKRLTREC 87
             FETS PWD+ V LC NVK+R+TREC
Sbjct:   556 FETSAPWDRVVDLCRNVKERITREC 580

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

UNIPROTKB|F1P5J7 AGPS "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 288 (106.4 bits), Expect = 1.7e-24, P = 1.7e-24
 Identities = 51/85 (60%), Positives = 66/85 (77%)

Query:     3 LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
             LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGYMLT++IAY+RD   DYY IG+S
Sbjct:   448 LLFEGDREKVLQHEKQVYDIATKFGGLAAGEDNGQRGYMLTFVIAYLRDLGLDYYVIGES 507

Query:    63 FETSVPWDKTVLLCINVKKRLTREC 87
             FETSVPWD+ + LC NVK+R+ REC
Sbjct:   508 FETSVPWDRVLDLCRNVKERIVREC 532

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

MGI|MGI:2443065 Agps "alkylglycerone phosphate synthase" [Mus musculus (taxid:10090)]

 Score = 284 (105.0 bits), Expect = 4.6e-24, P = 4.6e-24
 Identities = 50/85 (58%), Positives = 65/85 (76%)

Query:     3 LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
             LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD   +YY IG+S
Sbjct:   455 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLGLEYYVIGES 514

Query:    63 FETSVPWDKTVLLCINVKKRLTREC 87
             FETS PWD+ + LC NVK+R+ REC
Sbjct:   515 FETSAPWDRVIDLCRNVKERIRREC 539

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005777 "peroxisome" evidence=ISO

GO:0005778 "peroxisomal membrane" evidence=ISO

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=ISO

GO:0008610 "lipid biosynthetic process" evidence=ISO

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|P97275 AGPS "Alkyldihydroxyacetonephosphate synthase, peroxisomal" [Cavia porcellus (taxid:10141)]

 Score = 283 (104.7 bits), Expect = 6.2e-24, P = 6.2e-24
 Identities = 50/85 (58%), Positives = 65/85 (76%)

Query:     3 LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
             LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD   +YY IG+S
Sbjct:   468 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGES 527

Query:    63 FETSVPWDKTVLLCINVKKRLTREC 87
             FETS PWD+ V LC NVK+R+ REC
Sbjct:   528 FETSAPWDRVVDLCRNVKERIRREC 552

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IDA

GO:0008611 "ether lipid biosynthetic process" evidence=IDA

GO:0071949 "FAD binding" evidence=IDA

RGD|620364 Agps "alkylglycerone phosphate synthase" [Rattus norvegicus (taxid:10116)]

 Score = 280 (103.6 bits), Expect = 1.2e-23, P = 1.2e-23
 Identities = 48/85 (56%), Positives = 65/85 (76%)

Query:     3 LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
             LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD   +YY +G+S
Sbjct:   454 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYVVGES 513

Query:    63 FETSVPWDKTVLLCINVKKRLTREC 87
             FETS PWD+ + LC NVK+R+ REC
Sbjct:   514 FETSAPWDRVIDLCRNVKERIRREC 538

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005777 "peroxisome" evidence=ISO;IDA;TAS

GO:0005778 "peroxisomal membrane" evidence=ISO

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=ISO;IDA

GO:0008610 "lipid biosynthetic process" evidence=ISO

GO:0008611 "ether lipid biosynthetic process" evidence=IEA;ISS

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

GO:0042221 "response to chemical stimulus" evidence=IEP

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0071949 "FAD binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9EQR2	ADAS_RAT	2, ., 5, ., 1, ., 2, 6	0.5647	0.7727	0.1319	yes	N/A
O00116	ADAS_HUMAN	2, ., 5, ., 1, ., 2, 6	0.6117	0.7727	0.1291	yes	N/A
P97275	ADAS_CAVPO	2, ., 5, ., 1, ., 2, 6	0.5882	0.7727	0.1291	yes	N/A
Q9V778	ADAS_DROME	2, ., 5, ., 1, ., 2, 6	0.5348	0.7818	0.1362	yes	N/A
Q8C0I1	ADAS_MOUSE	2, ., 5, ., 1, ., 2, 6	0.5882	0.7727	0.1317	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	110
KOG1233|consensus	613		99.89
PF02913	248	FAD-oxidase_C: FAD linked oxidases, C-terminal dom	98.51
TIGR00387	413	glcD glycolate oxidase, subunit GlcD. This protein	97.88
PRK11230	499	glycolate oxidase subunit GlcD; Provisional	97.37
PLN02805	555	D-lactate dehydrogenase [cytochrome]	96.75
COG3286	204	Uncharacterized protein conserved in archaea [Func	92.48

>KOG1233|consensus

Probab=99.89  E-value=6.1e-24  Score=177.50  Aligned_cols=98  Identities=47%  Similarity=0.866  Sum_probs=94.3

Q ss_pred             CEEEEecChHHHHhHHHHHHHHHHHcCCcccCCcccccccccccchhhchHHHHhccCceeeeeccccccCcHHHHHHHH
Q psy4597           1 MALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVK   80 (110)
Q Consensus         1 ~~lgfEG~~~~V~~~~~~~~~I~~~~GGv~~G~~~G~~W~~~rF~~PYLRD~l~~~G~~~DT~ETAv~Ws~v~~l~~~V~   80 (110)
                      +++.|||+.++|+++.+++++|+.+++|+..|+++|+.+|..+|.++||||+.+++|+++|+||||+|||++..||++||
T Consensus       421 ATllfEGdre~V~qhE~~~y~iAekF~G~~aG~~NGqrGY~LTfvIAYiRDlgl~~gvlgESFETSvPWDrv~~LCRnVK  500 (613)
T KOG1233|consen  421 ATLLFEGDREEVDQHEERLYKIAEKFHGVVAGAENGQRGYRLTFVIAYIRDLGLNHGVLGESFETSVPWDRVLSLCRNVK  500 (613)
T ss_pred             hhheecccHHHHHHHHHHHHHHHHHhCCccccccccccceEEEEeHHHHHhhcccccchhhcccccCCHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCccc
Q psy4597          81 KRLTRECTVSLVGRIKSA   98 (110)
Q Consensus        81 ~a~~~a~~~~g~~~~~~~   98 (110)
                      +++.++|+++|+...+-+
T Consensus       501 er~~rEck~~gv~~~~~s  518 (613)
T KOG1233|consen  501 ERMKRECKAQGVTHPVLS  518 (613)
T ss_pred             HHHHHHHHhcCCCccccc
Confidence            999999999999876644

>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage

Probab=98.51  E-value=2.8e-08  Score=73.26  Aligned_cols=86  Identities=23%  Similarity=0.277  Sum_probs=69.3

Q ss_pred             CEEEEecChHH-HHhHHH-HHHHHHHHcCCcc----c-CCcccccccccccchhhchHHHHhccCceeeeeccccccCcH
Q psy4597           1 MALLVLGDPED-VKNNED-KIYSIAKRYGGIP----A-GESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTV   73 (110)
Q Consensus         1 ~~lgfEG~~~~-V~~~~~-~~~~I~~~~GGv~----~-G~~~G~~W~~~rF~~PYLRD~l~~~G~~~DT~ETAv~Ws~v~   73 (110)
                      +++.|+|+.++ ++.+.+ .+.++++++|+..    . .+...+.|..-++..||+++.....+...+++|+++||++++
T Consensus        62 llv~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~~~~~~~~~W~~R~~~~~~~~~~~~~~~~~~~~~dv~vp~~~l~  141 (248)
T PF02913_consen   62 LLVEFEGSDEEAVEEQLEAEIEEICKKYGGEDVVIADDEEEQERLWAIRRAIMPYLRDAAGRAGPVWDTEDVAVPPSRLP  141 (248)
T ss_dssp             EEEECCCHHHCCHHHHHHHHHHHHHCTCTCCEEEEEHCHHCTSTHHHHHHHHCCGGGCSHCTTEEEEEEEEEESCHHHHH
T ss_pred             EEEEECCCcHHHHHHHHHHHHHHHHhhcCCceeEEeCCHHHHHhhhhhhhhhcccccccccccCCceeeeeecccchhhh
Confidence            36889999854 666666 7888888888764    1 123457788888888899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy4597          74 LLCINVKKRLTRE   86 (110)
Q Consensus        74 ~l~~~V~~a~~~a   86 (110)
                      ++++.+++.+++.
T Consensus       142 ~~~~~~~~~~~~~  154 (248)
T PF02913_consen  142 EFLREIRALLREY  154 (248)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             hHHHhhhhhhhhc
Confidence            9999997666554

The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....

>TIGR00387 glcD glycolate oxidase, subunit GlcD

Probab=97.88  E-value=1.3e-05  Score=66.16  Aligned_cols=80  Identities=16%  Similarity=0.157  Sum_probs=61.5

Q ss_pred             EEEEecChHHHHhHHHHHHHHHHHcCCccc----C-CcccccccccccchhhchHHHHhccCceeeeeccccccCcHHHH
Q psy4597           2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPA----G-ESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLC   76 (110)
Q Consensus         2 ~lgfEG~~~~V~~~~~~~~~I~~~~GGv~~----G-~~~G~~W~~~rF~~PYLRD~l~~~G~~~DT~ETAv~Ws~v~~l~   76 (110)
                      ++.|+|..++++.+.+++.++++++|+...    + +...+.|...++..|++++.. ...+   +.|+|+||+++++++
T Consensus       235 ~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~r~~~~~~~~~~~-~~~~---~~d~~vp~~~l~~~~  310 (413)
T TIGR00387       235 LVEIDGVHEAVERDEEKIEQICRKNGAVDVQIAQDEEERALLWAGRRNAFKAASKLS-PLYL---IEDGTVPRSKLPEAL  310 (413)
T ss_pred             EEEecCCcHHHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHHHHHhHHHHHhhC-CCcc---eeEEecCHHHHHHHH
Confidence            578999998999999999999999988533    1 234456888888889998742 2222   467999999999999


Q ss_pred             HHHHHHHHH
Q psy4597          77 INVKKRLTR   85 (110)
Q Consensus        77 ~~V~~a~~~   85 (110)
                      +.+++.+++
T Consensus       311 ~~~~~~~~~  319 (413)
T TIGR00387       311 RGIADIARK  319 (413)
T ss_pred             HHHHHHHHH
Confidence            998666544

This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.

>PRK11230 glycolate oxidase subunit GlcD; Provisional

Probab=97.37  E-value=0.00022  Score=60.79  Aligned_cols=78  Identities=9%  Similarity=0.038  Sum_probs=56.9

Q ss_pred             EEEEecChHHHHhHHHHHHHHHHHcCCcccCC-----cccccccccccchhhchHHHHhccCceeeeeccccccCcHHHH
Q psy4597           2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGE-----SNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLC   76 (110)
Q Consensus         2 ~lgfEG~~~~V~~~~~~~~~I~~~~GGv~~G~-----~~G~~W~~~rF~~PYLRD~l~~~G~~~DT~ETAv~Ws~v~~l~   76 (110)
                      ++.|+|++++++.+.+++.++++++|+..+.-     +..+.|..-+...|+++..  ..+++  ..+++|||+++++++
T Consensus       292 l~e~~g~~~~v~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~W~~R~~~~~~~~~~--~~~~~--~~dv~vP~~~l~~~~  367 (499)
T PRK11230        292 LCELDGVESDVQEDCERVNDILLKAGATDVRLAQDEAERVRFWAGRKNAFPAVGRI--SPDYY--CMDGTIPRRELPGVL  367 (499)
T ss_pred             EEEecCCchHHHHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHhhHHHHHhh--CCCee--EEeecCChHHHHHHH
Confidence            57889999999999999999999999743321     2234666533456787752  23344  349999999999999


Q ss_pred             HHHHHHH
Q psy4597          77 INVKKRL   83 (110)
Q Consensus        77 ~~V~~a~   83 (110)
                      +.+++..
T Consensus       368 ~~~~~~~  374 (499)
T PRK11230        368 EGIARLS  374 (499)
T ss_pred             HHHHHHH
Confidence            9997644

>PLN02805 D-lactate dehydrogenase [cytochrome]

Probab=96.75  E-value=0.0019  Score=56.05  Aligned_cols=82  Identities=15%  Similarity=0.077  Sum_probs=53.1

Q ss_pred             CEEEEecChHHHHhHHHHHHHHHHHcCCc--ccCCcc---cccccccccchhhchHHHHhccCceeeeeccccccCcHHH
Q psy4597           1 MALLVLGDPEDVKNNEDKIYSIAKRYGGI--PAGESN---GRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLL   75 (110)
Q Consensus         1 ~~lgfEG~~~~V~~~~~~~~~I~~~~GGv--~~G~~~---G~~W~~~rF~~PYLRD~l~~~G~~~DT~ETAv~Ws~v~~l   75 (110)
                      +++.|+|++++++.+.+.+.+|++++|+.  .+.+.+   .+.|. .|-.....-- ...-+....+.+++|||++++++
T Consensus       366 Ll~e~~g~~~~~~~~~~~~~~i~~~~g~~~~~~a~~~~e~~~lW~-~R~~~~~~~~-~~~~~~~~~~~DvaVP~s~L~e~  443 (555)
T PLN02805        366 LMFEFIGTEAYAREQTLIVQKIASKHNGSDFVFAEEPEAKKELWK-IRKEALWACF-AMEPKYEAMITDVCVPLSHLAEL  443 (555)
T ss_pred             EEEEEecCcHHHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHH-HHHHHHHHHh-hcCCCCceeEEEEEEEHHHHHHH
Confidence            36788999989999999999999999984  222222   33465 3322211100 01112333467899999999999


Q ss_pred             HHHHHHHHH
Q psy4597          76 CINVKKRLT   84 (110)
Q Consensus        76 ~~~V~~a~~   84 (110)
                      ++.+++.+.
T Consensus       444 i~~~~~~~~  452 (555)
T PLN02805        444 ISRSKKELD  452 (555)
T ss_pred             HHHHHHHHH
Confidence            999866553

>COG3286 Uncharacterized protein conserved in archaea [Function unknown]

Probab=92.48  E-value=0.49  Score=36.84  Aligned_cols=84  Identities=13%  Similarity=0.163  Sum_probs=59.7

Q ss_pred             EEEecChHHHHhHHHHHHHHHHHcCCcccCCcccc-c----ccccccchh--hchHHHHhccCcee----eeeccccccC
Q psy4597           3 LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGR-R----GYMLTYIIA--YIRDFACDYYFIGD----SFETSVPWDK   71 (110)
Q Consensus         3 lgfEG~~~~V~~~~~~~~~I~~~~GGv~~G~~~G~-~----W~~~rF~~P--YLRD~l~~~G~~~D----T~ETAv~Ws~   71 (110)
                      +=..|.+++++...+.+.++.+..-+..-+...|- .    -+...=+.|  -|+|.|--+|+=++    -++|++||+.
T Consensus        41 V~v~G~~~eireair~irel~~~vr~r~~~~~~~ly~l~~~~~~a~p~Vp~~vl~daLk~~GyrVevr~~~l~T~ap~~e  120 (204)
T COG3286          41 VNVFGTKDEIREAIRAIRELHRRVRRRLYPDRQGLYTLYRIFEEASPNVPPDVLIDALKLLGYRVEVRGGELKTNAPWSE  120 (204)
T ss_pred             EEEecchHHHHHHHHHHHHHHHHHHhhhccCccceEeeHhHHHhhcCCCCHHHHHHHHHhCCceEEeeCceeecCCCHHH
Confidence            34578889999999999988887776443332221 1    111222222  89999999998765    4899999999


Q ss_pred             cHHHHHHHHHHHHHH
Q psy4597          72 TVLLCINVKKRLTRE   86 (110)
Q Consensus        72 v~~l~~~V~~a~~~a   86 (110)
                      +.++.+++-+..+.+
T Consensus       121 v~E~vreLse~~~E~  135 (204)
T COG3286         121 VVELVRELSEVYREA  135 (204)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999887766665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	110
4bca_A	658	Mammalian Alkyldihydroxyacetonephosphate Synthase:		8e-28
4bc7_A	658	Mammalian Alkyldihydroxyacetonephosphate Synthase:		8e-28
4bby_A	658	Mammalian Alkyldihydroxyacetonephosphate Synthase:		8e-28

>pdb|4BCA|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Tyr578phe Mutant Length = 658

Iteration: 1
 Score =  118 bits (296), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 50/85 (58%), Positives = 65/85 (76%)
Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD   +YY IG+S
Sbjct: 468 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGES 527
Query: 63  FETSVPWDKTVLLCINVKKRLTREC 87
           FETS PWD+ V LC NVK+R+ REC
Sbjct: 528 FETSAPWDRVVDLCRNVKERIRREC 552

>pdb|4BC7|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Arg419his Mutant Length = 658

Iteration: 1
 Score =  118 bits (296), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 50/85 (58%), Positives = 65/85 (76%)
Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD   +YY IG+S
Sbjct: 468 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGES 527
Query: 63  FETSVPWDKTVLLCINVKKRLTREC 87
           FETS PWD+ V LC NVK+R+ REC
Sbjct: 528 FETSAPWDRVVDLCRNVKERIRREC 552

>pdb|4BBY|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-Type Length = 658

Iteration: 1
 Score =  118 bits (296), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 50/85 (58%), Positives = 65/85 (76%)
Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD   +YY IG+S
Sbjct: 468 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGES 527
Query: 63  FETSVPWDKTVLLCINVKKRLTREC 87
           FETS PWD+ V LC NVK+R+ REC
Sbjct: 528 FETSAPWDRVVDLCRNVKERIRREC 552

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	110
2uuu_A	584	Alkyldihydroxyacetonephosphate synthase; transfera	1e-18

>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Length = 584

 Score = 78.6 bits (194), Expect = 1e-18
 Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 8/103 (7%)

Query: 1   MALLVL---GDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYY 57
           + L ++   G  + V  +   ++ I  +      G + G+      Y + YIRDF  D+ 
Sbjct: 392 VCLSIIGFEGPKKVVDFHRTSVFDILSKNAAFGLGSAPGKTWAEKRYDLPYIRDFLLDHN 451

Query: 58  FIGDSFETSVPWDKTVLLCINVKKRLTREC-----TVSLVGRI 95
              D  ET+V +     L  + K+   +          +   I
Sbjct: 452 MWVDVAETTVSYANLQTLWKDAKQTFVKHFKDQGIPAWICAHI 494

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	110
2uuu_A	584	Alkyldihydroxyacetonephosphate synthase; transfera	99.35
4bby_A	658	Alkyldihydroxyacetonephosphate synthase, peroxiso;	99.23
1e8g_A	560	Vanillyl-alcohol oxidase; oxidoreductase, flavoenz	97.28
1f0x_A	571	DLDH, D-lactate dehydrogenase; oxidoreductase; HET	97.22
3pm9_A	476	Putative oxidoreductase; putative D-2-hydroxygluta	96.63
2exr_A	524	Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin	95.15
1wvf_A	520	4-cresol dehydrogenase [hydroxylating] flavoprote	93.35

>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*

Probab=99.35  E-value=8.3e-13  Score=111.96  Aligned_cols=93  Identities=19%  Similarity=0.246  Sum_probs=87.6

Q ss_pred             EEEEecChHHHHhHHHHHHHHHHHcCCcccCCcccccccccccchhhchHHHHhccCceeeeeccccccCcHHHHHHHHH
Q psy4597           2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKK   81 (110)
Q Consensus         2 ~lgfEG~~~~V~~~~~~~~~I~~~~GGv~~G~~~G~~W~~~rF~~PYLRD~l~~~G~~~DT~ETAv~Ws~v~~l~~~V~~   81 (110)
                      ++.|+|++++|+.+.+++.++|+++||...+++..+.|+..|+..||+|+.++++|.+.+++||+|||++++++++.+++
T Consensus       396 lve~~g~~~~v~~~~~~~~~~~~~~g~~~~~~~~~~lW~~r~~~~~~l~~~~~~~g~~~~~~Dv~VP~~~l~~~~~~~~~  475 (584)
T 2uuu_A          396 IIGFEGPKKVVDFHRTSVFDILSKNAAFGLGSAPGKTWAEKRYDLPYIRDFLLDHNMWVDVAETTVSYANLQTLWKDAKQ  475 (584)
T ss_dssp             EEEEEECHHHHHHHHHHHHHHHHTTTCEEEEEESTTHHHHGGGGHHHHHHHHHTTTEEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             EEEEecChHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHhhhchHHHHhhhcccCCccccceEEeeHHHHHHHHHHHHH
Confidence            57899999999999999999999999988888888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCC
Q psy4597          82 RLTRECTVSLVGR   94 (110)
Q Consensus        82 a~~~a~~~~g~~~   94 (110)
                      .+.+.+.++|.+.
T Consensus       476 ~l~~~~~~~g~~~  488 (584)
T 2uuu_A          476 TFVKHFKDQGIPA  488 (584)
T ss_dssp             HHHHHHHTTTCCE
T ss_pred             HHHhHHHhcCCee
Confidence            9999999988774

>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*

Probab=99.23  E-value=1e-11  Score=106.04  Aligned_cols=93  Identities=55%  Similarity=1.023  Sum_probs=88.9

Q ss_pred             EEEEecChHHHHhHHHHHHHHHHHcCCcccCCcccccccccccchhhchHHHHhccCceeeeeccccccCcHHHHHHHHH
Q psy4597           2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKK   81 (110)
Q Consensus         2 ~lgfEG~~~~V~~~~~~~~~I~~~~GGv~~G~~~G~~W~~~rF~~PYLRD~l~~~G~~~DT~ETAv~Ws~v~~l~~~V~~   81 (110)
                      ++.|||+.+.+..+.+++.++++++||+..++..++.|+..||..||+|+..++++...+++||++||++++++++++++
T Consensus       467 ~~~~eg~~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~avP~~~l~~~~~~v~~  546 (658)
T 4bby_A          467 TLLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFETSAPWDRVVDLCRNVKE  546 (658)
T ss_dssp             EEEEEECHHHHHHHHHHHHHHHHTTTCEECCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEGGGHHHHHHHHHH
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHhhHHHHHHhhccccCCccceEEEEeeHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCC
Q psy4597          82 RLTRECTVSLVGR   94 (110)
Q Consensus        82 a~~~a~~~~g~~~   94 (110)
                      ++.+.+.+.++..
T Consensus       547 ~l~~~~~~~g~~~  559 (658)
T 4bby_A          547 RIRRECKEKGVQF  559 (658)
T ss_dssp             HHHHHHHHTTCSS
T ss_pred             HHHHHHHhcCccc
Confidence            9999999987754

>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*

Probab=97.28  E-value=0.00027  Score=59.12  Aligned_cols=87  Identities=10%  Similarity=-0.050  Sum_probs=62.1

Q ss_pred             EEEEecChHHHHhHHHHHHHHHHHcCCccc--CCcc--cccccccccch----hhchHH---HHhccCceeeeeccccc-
Q psy4597           2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPA--GESN--GRRGYMLTYII----AYIRDF---ACDYYFIGDSFETSVPW-   69 (110)
Q Consensus         2 ~lgfEG~~~~V~~~~~~~~~I~~~~GGv~~--G~~~--G~~W~~~rF~~----PYLRD~---l~~~G~~~DT~ETAv~W-   69 (110)
                      ++.|+|+++.|+.+.+++.++|+++||...  .+.+  .+.|.. |+..    |+++..   .|..|=...++++++|| 
T Consensus       354 ~~e~~g~~~~v~~~~~~i~~i~~~~~~~~~~~~~~~~e~~~~w~-R~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~vP~~  432 (560)
T 1e8g_A          354 YGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRV-RDKTMQGIPTYDELKWIDWLPNGAHLFFSPIAKVS  432 (560)
T ss_dssp             EEEEESCHHHHHHHHHHHHHHHTTSTTCEEECGGGSCTTCHHHH-HHHHTTTCCCCGGGGGGGGSTTEEEEEECBEECSS
T ss_pred             EEEEeCCHHHHHHHHHHHHHHHHhCCCceeeccccchhhhhHHH-HHhhcccCchhhhhccccccCCCceEEEeeecCCC
Confidence            466999999999999999999999998533  3222  344554 7665    887754   23332234668999999 


Q ss_pred             -cCcHHHHHHHHHHHHHHHHhcCCC
Q psy4597          70 -DKTVLLCINVKKRLTRECTVSLVG   93 (110)
Q Consensus        70 -s~v~~l~~~V~~a~~~a~~~~g~~   93 (110)
                       ++++++++.+++.    ++++|.+
T Consensus       433 ~~~l~~~~~~~~~~----~~~~g~~  453 (560)
T 1e8g_A          433 GEDAMMQYAVTKKR----CQEAGLD  453 (560)
T ss_dssp             HHHHHHHHHHHHHH----HHHHTCC
T ss_pred             HHHHHHHHHHHHHH----HHHcCCc
Confidence             9999999998653    4555655

>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1

Probab=97.22  E-value=3.9e-05  Score=65.06  Aligned_cols=81  Identities=11%  Similarity=0.105  Sum_probs=59.3

Q ss_pred             EEEEecChHHHHhHHHHHHHHHHHcCCccc--CCcccccccccccchh----hchHHHHh-ccCceeeeeccccccCcHH
Q psy4597           2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPA--GESNGRRGYMLTYIIA----YIRDFACD-YYFIGDSFETSVPWDKTVL   74 (110)
Q Consensus         2 ~lgfEG~~~~V~~~~~~~~~I~~~~GGv~~--G~~~G~~W~~~rF~~P----YLRD~l~~-~G~~~DT~ETAv~Ws~v~~   74 (110)
                      ++-|+|+..+  ...+++.+++++++|...  .++.+++|...||..+    ++|+...+ .| .+.++|||+||++++.
T Consensus       393 lve~~g~~~~--~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~R~~~~~~~~~~r~~~~~~~g-~~~~~Dvavp~~~l~~  469 (571)
T 1f0x_A          393 LLKMAGDGVG--EAKSWLVDYFKQAEGDFFVCTPEEGSKAFLHRFAAAGAAIRYQAVHSDEVE-DILALDIALRRNDTEW  469 (571)
T ss_dssp             EEEECTTHHH--HHHHHHHHHHHHSSCEEEECCHHHHHHHHHHHTTHHHHHHHHHHHTTTTEE-EEEEEEEECCTTCSCC
T ss_pred             EEEEecCcHH--HHHHHHHHHHHHcCCCeeecCccHHHHHHHHhhhhhhHHHHhhhcchhhcC-CceEEEEEecHHHhHH
Confidence            4566666543  235666778888866433  4566777888899997    88987775 33 3689999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy4597          75 LCINVKKRLTRE   86 (110)
Q Consensus        75 l~~~V~~a~~~a   86 (110)
                      + +.+++.+.+.
T Consensus       470 ~-~~~~~~l~~~  480 (571)
T 1f0x_A          470 Y-EHLPPEIDSQ  480 (571)
T ss_dssp             S-CCCCHHHHTT
T ss_pred             H-HHHHHHHHhh
Confidence            9 8887766543

>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}

Probab=96.63  E-value=0.0019  Score=53.22  Aligned_cols=81  Identities=10%  Similarity=-0.051  Sum_probs=56.5

Q ss_pred             CEEEEecChHHHHhHHHHHHHHHHHcCCccc---CC---cccccccccccchhhchHHHHhccCceeeeeccccccCcHH
Q psy4597           1 MALLVLGDPEDVKNNEDKIYSIAKRYGGIPA---GE---SNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVL   74 (110)
Q Consensus         1 ~~lgfEG~~~~V~~~~~~~~~I~~~~GGv~~---G~---~~G~~W~~~rF~~PYLRD~l~~~G~~~DT~ETAv~Ws~v~~   74 (110)
                      +++-|+|+.++++.+.+++.+++.++|++.-   -.   +..+-|. .|-..+   ..+...|. ..+.+++||||++++
T Consensus       291 llve~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~a~~~~~~~~lW~-~R~~~~---~~~~~~g~-~~~~Dv~vP~~~l~~  365 (476)
T 3pm9_A          291 VLIELSSPRDDARAALESILERGFEDGIVVDAAIANSVQQQQAFWK-LREEIS---PAQKPEGG-SIKHDISVPVAAVPQ  365 (476)
T ss_dssp             EEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEECCSHHHHHHHHH-HHHTHH---HHTGGGCC-EECCEEECCGGGHHH
T ss_pred             EEEEEccCcHHHHHHHHHHHHHHHhcCCCcceEEeCCHHHHHHHHH-HHHHHH---HHHhhcCC-ceeEEEEeeHHHHHH
Confidence            3577899888888899999999999987421   11   1223453 333332   12223454 688999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy4597          75 LCINVKKRLTRE   86 (110)
Q Consensus        75 l~~~V~~a~~~a   86 (110)
                      +++.+++.+.+.
T Consensus       366 ~~~~~~~~~~~~  377 (476)
T 3pm9_A          366 FIEQANAAVVAL  377 (476)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999998777665

>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A*

Probab=95.15  E-value=0.0019  Score=53.70  Aligned_cols=67  Identities=6%  Similarity=-0.132  Sum_probs=50.6

Q ss_pred             ec-ChHHHHhHHHHHHHHHHHcCCcccCCc----------ccccccccccchhhchHHHHhccCceeeeeccccccCcHH
Q psy4597           6 LG-DPEDVKNNEDKIYSIAKRYGGIPAGES----------NGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVL   74 (110)
Q Consensus         6 EG-~~~~V~~~~~~~~~I~~~~GGv~~G~~----------~G~~W~~~rF~~PYLRD~l~~~G~~~DT~ETAv~Ws~v~~   74 (110)
                      +| +.++|+.+.+++.++++.+||....+.          ....|...++..|.+..     .    +++++||||++++
T Consensus       324 ~g~~~~~v~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~W~~R~~~~~a~~~-----~----~~Dv~VP~s~l~~  394 (524)
T 2exr_A          324 DSDSNSTIDKRVERLIGRLRFNEGLRFEVDLPYVDFLLRVKRSEEIAKENGTWETPH-----P----WLNLFVSKRDIGD  394 (524)
T ss_dssp             TTSCHHHHHHHHHHHHTTCCCCTTCEEEEEEEHHHHHTTTHHHHHHHHHTTCSSSCC-----C----CEEEEEEHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCCCeEeecccchhhhhhhhhhHHHHhhhhcccccCC-----C----eeEEEECHHHHHH
Confidence            78 678899999999999999999755432          22237766666655542     1    3699999999999


Q ss_pred             HHHHHHH
Q psy4597          75 LCINVKK   81 (110)
Q Consensus        75 l~~~V~~   81 (110)
                      +++.|++
T Consensus       395 ~~~~v~~  401 (524)
T 2exr_A          395 FNRTVFK  401 (524)
T ss_dssp             HHHHCCC
T ss_pred             HHHHHHH
Confidence            9988865

>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*

Probab=93.35  E-value=0.12  Score=42.47  Aligned_cols=84  Identities=10%  Similarity=-0.155  Sum_probs=50.2

Q ss_pred             EEEEecChHHHHhHHHHHHHHHHHcCCcccCCcccccccccccchhhchHHHHh----------------ccCceeeeec
Q psy4597           2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACD----------------YYFIGDSFET   65 (110)
Q Consensus         2 ~lgfEG~~~~V~~~~~~~~~I~~~~GGv~~G~~~G~~W~~~rF~~PYLRD~l~~----------------~G~~~DT~ET   65 (110)
                      ++.|+|++++++.+.+.+.++++++|+..+..   ..+. .+-...++|+.++.                -+.+.++.-.
T Consensus       323 ~~~~~g~~~~v~~~~~~i~~~~~~~~~~~~~~---~~~~-~~~~~w~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v  398 (520)
T 1wvf_A          323 YAALYGTQEQVDVNWKIVTDVFKKLGKGRIVT---QEEA-GDTQPFKYRAQLMSGVPNLQEFGLYNWRGGGGSMWFAPVS  398 (520)
T ss_dssp             EEEEEESHHHHHHHHHHHHHHHHHHTCCEEEE---HHHH-TTCTTHHHHHHHHTTCCCCGGGGGGGSSCTEEEEEECBEE
T ss_pred             EEEEeCCHHHHHHHHHHHHHHHHHcCCeEEEe---cccc-hhhhHHHHHHHhhccCchhhhhccccccCCCceEEecccc
Confidence            35599999999999999999999999854421   1222 12334455544431                1122223333


Q ss_pred             cccccCcHHHHHHHHHHHHHHHHhcCCC
Q psy4597          66 SVPWDKTVLLCINVKKRLTRECTVSLVG   93 (110)
Q Consensus        66 Av~Ws~v~~l~~~V~~a~~~a~~~~g~~   93 (110)
                      .++|++++++++.+++    .++++|.+
T Consensus       399 p~~~~~l~~~~~~~~~----~~~~~~~~  422 (520)
T 1wvf_A          399 EARGSECKKQAAMAKR----VLHKYGLD  422 (520)
T ss_dssp             ESCHHHHHHHHHHHHH----HHHHTTCC
T ss_pred             CCCHHHHHHHHHHHHH----HHHHcCCC
Confidence            4455788888777644    44566654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	110
d1wvfa1	279	Flavoprotein subunit of p-cresol methylhydroxylase	97.79
d1e8ga1	287	Vanillyl-alcohol oxidase {Fungus (Penicillium simp	97.15

>d1wvfa1 d.58.32.1 (A:243-521) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: FAD-linked oxidases, C-terminal domain
family: Vanillyl-alcohol oxidase-like
domain: Flavoprotein subunit of p-cresol methylhydroxylase
species: Pseudomonas putida [TaxId: 303]

Probab=97.79  E-value=9.2e-06  Score=59.72  Aligned_cols=91  Identities=11%  Similarity=-0.036  Sum_probs=63.5

Q ss_pred             EEEEecChHHHHhHHHHHHHHHHHcCCccc---CCccc-ccccc---cccchhhchHHHHhc-----cCceeeeeccccc
Q psy4597           2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPA---GESNG-RRGYM---LTYIIAYIRDFACDY-----YFIGDSFETSVPW   69 (110)
Q Consensus         2 ~lgfEG~~~~V~~~~~~~~~I~~~~GGv~~---G~~~G-~~W~~---~rF~~PYLRD~l~~~-----G~~~DT~ETAv~W   69 (110)
                      ++.|+|++++|+.+.+++.++++++||..+   ..... +.|..   ..+..|+++...+.+     |.+..+-..+++|
T Consensus        82 ~~~l~G~~~~v~~~~~~i~~i~~~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~  161 (279)
T d1wvfa1          82 YAALYGTQEQVDVNWKIVTDVFKKLGKGRIVTQEEAGDTQPFKYRAQLMSGVPNLQEFGLYNWRGGGGSMWFAPVSEARG  161 (279)
T ss_dssp             EEEEEESHHHHHHHHHHHHHHHHHHTCCEEEEHHHHTTCTTHHHHHHHHTTCCCCGGGGGGGSSCTEEEEEECBEEESCH
T ss_pred             EEEeecCHHHHHHHHHHHHHHHHHCCCceEEeCCCHHHHHHHHHHHHhhhhhhhhhhhhHhhcCCCCCcceeeeeecCCH
Confidence            578899999999999999999999999654   11112 23332   225667777766654     4555566678899


Q ss_pred             cCcHHHHHHHHHHHHHHHHhcCCCCCc
Q psy4597          70 DKTVLLCINVKKRLTRECTVSLVGRIK   96 (110)
Q Consensus        70 s~v~~l~~~V~~a~~~a~~~~g~~~~~   96 (110)
                      |+++++++.+    ++.++++|.+...
T Consensus       162 s~l~~~~~~~----~~~~~~~g~~~~~  184 (279)
T d1wvfa1         162 SECKKQAAMA----KRVLHKYGLDYVA  184 (279)
T ss_dssp             HHHHHHHHHH----HHHHHHTTCCCCE
T ss_pred             HHHHHHHHHH----HHHHHHhCCCeEE
Confidence            9999988776    4455566665543

>d1e8ga1 d.58.32.1 (A:274-560) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: FAD-linked oxidases, C-terminal domain
family: Vanillyl-alcohol oxidase-like
domain: Vanillyl-alcohol oxidase
species: Fungus (Penicillium simplicissimum) [TaxId: 69488]

Probab=97.15  E-value=0.00032  Score=51.04  Aligned_cols=91  Identities=8%  Similarity=-0.216  Sum_probs=60.8

Q ss_pred             EEEEecChHHHHhHHHHHHHHHHHcCCcccC--C---ccccccccccc------chhhchHHHHhccCceeeeecccccc
Q psy4597           2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPAG--E---SNGRRGYMLTY------IIAYIRDFACDYYFIGDSFETSVPWD   70 (110)
Q Consensus         2 ~lgfEG~~~~V~~~~~~~~~I~~~~GGv~~G--~---~~G~~W~~~rF------~~PYLRD~l~~~G~~~DT~ETAv~Ws   70 (110)
                      .+.|+|+++.|+.+.+.+.++++++||..+-  +   ....-|...++      ..++..+...+.+..+.+.+++++++
T Consensus        81 ~~~l~G~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  160 (287)
T d1e8ga1          81 YGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRVRDKTMQGIPTYDELKWIDWLPNGAHLFFSPIAKVSG  160 (287)
T ss_dssp             EEEEESCHHHHHHHHHHHHHHHTTSTTCEEECGGGSCTTCHHHHHHHHTTTCCCCGGGGGGGGSTTEEEEEECBEECSSH
T ss_pred             eeecccCHHHHHHHHHHHHHHHHHcCCcEEEecCCHHHHHHHHHHHHHhHhhhhhhhhhHHhhcCCCCeeeeeceeccCh
Confidence            5788999999999999999999999996431  1   22122333222      12344445556677788888999886


Q ss_pred             C-cHHHHHHHHHHHHHHHHhcCCCCCc
Q psy4597          71 K-TVLLCINVKKRLTRECTVSLVGRIK   96 (110)
Q Consensus        71 ~-v~~l~~~V~~a~~~a~~~~g~~~~~   96 (110)
                      + ++++++.    +++.+.++|.....
T Consensus       161 ~~l~~~~~~----~~~~~~~~g~~~~~  183 (287)
T d1e8ga1         161 EDAMMQYAV----TKKRCQEAGLDFIG  183 (287)
T ss_dssp             HHHHHHHHH----HHHHHHHHTCCCCE
T ss_pred             HHHHHHHHH----HHHHHHHcCCCeEE
Confidence            4 6665554    46666777766543