Psyllid ID: psy4801

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140---
MGKPRGIRTARKHVNNRRVQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS
cccccHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEEEEEEEEcccccccccEEEEEEccccEEEEEEEcccccccccccccEEEEEcccccccccccccccEEEEEEEcccHHHHHHHcccccccc
cccccHHHHHHHHHHHHHHHHHHcHHHHHHHHccccccccccccccccEEEEEEEEEcccccccHHHHHEEEEEEEcccEEEEEEcccccEEEEccccEEEEEccccccccccccccEEEEEEEEcccHHHHHHHcccccccc
MGKPRGIRTARKHVnnrrvqrwadkdykkahlgtrwkanpfggashakGIVLEKVGveakqpnsaiRKCVRVQLIKNGkkitafvprdgclnyieENDEVLVAGfgrkghavgdipgVRFKVVKVANVSLLALYKekkerprs
mgkprgirtarkhvnnrrvqrwadkdykkahlgtrwkanpfggasHAKGIVLEKVGveakqpnsairkcVRVQLikngkkitafvprdgCLNYIEENDEVLVAGFGRKGHavgdipgvrfkVVKVANVSllalykekkerprs
MGKPRGIRTARKHVNNRRVQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS
******************VQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALY*********
**KPRGIRTA********************************GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLA***********
MGKPRGIRTARKHVNNRRVQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK********
***PRGIRTARKHVNNRRVQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEK******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGKPRGIRTARKHVNNRRVQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query143 2.2.26 [Sep-21-2011]
Q962Q7143 40S ribosomal protein S23 N/A N/A 1.0 1.0 0.965 5e-76
Q6EV23143 40S ribosomal protein S23 N/A N/A 1.0 1.0 0.965 5e-76
Q8T3U2143 40S ribosomal protein S23 yes N/A 1.0 1.0 0.972 1e-75
Q86FP7143 40S ribosomal protein S23 N/A N/A 1.0 1.0 0.958 1e-74
Q9GRJ3143 40S ribosomal protein S23 N/A N/A 1.0 1.0 0.923 2e-72
P90707143 40S ribosomal protein S23 N/A N/A 1.0 1.0 0.874 7e-68
Q90YQ1143 40S ribosomal protein S23 N/A N/A 1.0 1.0 0.895 1e-67
P62268143 40S ribosomal protein S23 yes N/A 1.0 1.0 0.895 2e-67
P62267143 40S ribosomal protein S23 yes N/A 1.0 1.0 0.895 2e-67
P62266143 40S ribosomal protein S23 yes N/A 1.0 1.0 0.895 2e-67
>sp|Q962Q7|RS23_SPOFR 40S ribosomal protein S23 OS=Spodoptera frugiperda GN=RpS23 PE=2 SV=1 Back     alignment and function desciption
 Score =  282 bits (721), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 138/143 (96%), Positives = 142/143 (99%)

Query: 1   MGKPRGIRTARKHVNNRRVQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAK 60
           MGKPRGIRTARKHVN+RR QRWADKDYKKAH+GTRWKANPFGGASHAKGIVLEKVGVEAK
Sbjct: 1   MGKPRGIRTARKHVNHRREQRWADKDYKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 60

Query: 61  QPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRF 120
           QPNSAIRKCVRVQLIKNGKK+TAFVPRDGCLN+IEENDEVLVAGFGRKGHAVGDIPGVRF
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 120

Query: 121 KVVKVANVSLLALYKEKKERPRS 143
           KVVKVANVSLLALYKEKKERPRS
Sbjct: 121 KVVKVANVSLLALYKEKKERPRS 143

Spodoptera frugiperda (taxid: 7108)
>sp|Q6EV23|RS23_PAPDA 40S ribosomal protein S23 OS=Papilio dardanus GN=RpS23 PE=2 SV=1 Back     alignment and function description
>sp|Q8T3U2|RS23_DROME 40S ribosomal protein S23 OS=Drosophila melanogaster GN=RpS23 PE=2 SV=1 Back     alignment and function description
>sp|Q86FP7|RS23_DERVA 40S ribosomal protein S23 OS=Dermacentor variabilis GN=RpS23 PE=2 SV=1 Back     alignment and function description
>sp|Q9GRJ3|RS23_LUMRU 40S ribosomal protein S23 OS=Lumbricus rubellus GN=RPS23 PE=2 SV=1 Back     alignment and function description
>sp|P90707|RS23_BRUMA 40S ribosomal protein S23 OS=Brugia malayi GN=rps-23 PE=2 SV=1 Back     alignment and function description
>sp|Q90YQ1|RS23_ICTPU 40S ribosomal protein S23 OS=Ictalurus punctatus GN=rps23 PE=2 SV=1 Back     alignment and function description
>sp|P62268|RS23_RAT 40S ribosomal protein S23 OS=Rattus norvegicus GN=Rps23 PE=1 SV=3 Back     alignment and function description
>sp|P62267|RS23_MOUSE 40S ribosomal protein S23 OS=Mus musculus GN=Rps23 PE=2 SV=3 Back     alignment and function description
>sp|P62266|RS23_HUMAN 40S ribosomal protein S23 OS=Homo sapiens GN=RPS23 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query143
110671450143 putative ribosomal protein S23e [Diaphor 1.0 1.0 1.0 2e-76
242247238143 40S ribosomal protein S23-like [Acyrthos 1.0 1.0 0.986 2e-75
242025351143 40S ribosomal protein S23, putative [Ped 1.0 1.0 0.979 9e-75
121543841143 putative ribosomal protein S23e [Maconel 1.0 1.0 0.979 1e-74
90820006143 putative ribosomal protein S23e [Graphoc 1.0 1.0 0.972 1e-74
91076514143 PREDICTED: similar to S23e ribosomal pro 1.0 1.0 0.972 3e-74
50344514143 S23e ribosomal protein [Biphyllus lunatu 1.0 1.0 0.972 3e-74
52000789143 RecName: Full=40S ribosomal protein S23 1.0 1.0 0.965 4e-74
22024141143 ribosomal protein S23 [Drosophila melano 1.0 1.0 0.972 7e-74
38048731148 similar to Drosophila melanogaster CG841 1.0 0.966 0.972 8e-74
>gi|110671450|gb|ABG81976.1| putative ribosomal protein S23e [Diaphorina citri] Back     alignment and taxonomy information
 Score =  290 bits (741), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 143/143 (100%), Positives = 143/143 (100%)

Query: 1   MGKPRGIRTARKHVNNRRVQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAK 60
           MGKPRGIRTARKHVNNRRVQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAK
Sbjct: 1   MGKPRGIRTARKHVNNRRVQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAK 60

Query: 61  QPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRF 120
           QPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRF
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRF 120

Query: 121 KVVKVANVSLLALYKEKKERPRS 143
           KVVKVANVSLLALYKEKKERPRS
Sbjct: 121 KVVKVANVSLLALYKEKKERPRS 143

Source: Diaphorina citri

Species: Diaphorina citri

Genus: Diaphorina

Family: Psyllidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|242247238|ref|NP_001156067.1| 40S ribosomal protein S23-like [Acyrthosiphon pisum] gi|239793514|dbj|BAH72869.1| ACYPI000819 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|242025351|ref|XP_002433088.1| 40S ribosomal protein S23, putative [Pediculus humanus corporis] gi|242025355|ref|XP_002433090.1| 40S ribosomal protein S23, putative [Pediculus humanus corporis] gi|212518615|gb|EEB20350.1| 40S ribosomal protein S23, putative [Pediculus humanus corporis] gi|212518617|gb|EEB20352.1| 40S ribosomal protein S23, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|121543841|gb|ABM55585.1| putative ribosomal protein S23e [Maconellicoccus hirsutus] Back     alignment and taxonomy information
>gi|90820006|gb|ABD98760.1| putative ribosomal protein S23e [Graphocephala atropunctata] Back     alignment and taxonomy information
>gi|91076514|ref|XP_973351.1| PREDICTED: similar to S23e ribosomal protein [Tribolium castaneum] gi|50344512|emb|CAH04342.1| S23e ribosomal protein [Carabus granulatus] gi|69608480|emb|CAJ01862.1| ribosomal protein S23e [Sphaerius sp. APV-2005] gi|70909595|emb|CAJ17218.1| ribosomal protein S23e [Georissus sp. APV-2005] gi|270002405|gb|EEZ98852.1| hypothetical protein TcasGA2_TC004462 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|50344514|emb|CAH04343.1| S23e ribosomal protein [Biphyllus lunatus] gi|332372903|gb|AEE61593.1| unknown [Dendroctonus ponderosae] Back     alignment and taxonomy information
>gi|52000789|sp|Q6EV23.1|RS23_PAPDA RecName: Full=40S ribosomal protein S23 gi|54039497|sp|Q962Q7.1|RS23_SPOFR RecName: Full=40S ribosomal protein S23 gi|15213832|gb|AAK92191.1|AF400219_1 ribosomal protein S23 [Spodoptera frugiperda] gi|50284392|emb|CAH04127.1| ribsomal protein S23e [Papilio dardanus] gi|315115375|gb|ADT80660.1| ribosomal protein S23 [Euphydryas aurinia] gi|389608177|dbj|BAM17700.1| ribosomal protein S23 [Papilio xuthus] gi|389610791|dbj|BAM19006.1| ribosomal protein S23 [Papilio polytes] Back     alignment and taxonomy information
>gi|22024141|ref|NP_610939.2| ribosomal protein S23 [Drosophila melanogaster] gi|125811142|ref|XP_001361764.1| GA21060 [Drosophila pseudoobscura pseudoobscura] gi|194754389|ref|XP_001959478.1| GF12897 [Drosophila ananassae] gi|194883144|ref|XP_001975664.1| GG22436 [Drosophila erecta] gi|195028883|ref|XP_001987305.1| GH20043 [Drosophila grimshawi] gi|195121792|ref|XP_002005403.1| GI20452 [Drosophila mojavensis] gi|195153429|ref|XP_002017629.1| GL17287 [Drosophila persimilis] gi|195334278|ref|XP_002033811.1| GM20223 [Drosophila sechellia] gi|195383974|ref|XP_002050700.1| GJ22302 [Drosophila virilis] gi|195430130|ref|XP_002063110.1| GK21747 [Drosophila willistoni] gi|195485891|ref|XP_002091277.1| GE12328 [Drosophila yakuba] gi|195583312|ref|XP_002081467.1| GD25696 [Drosophila simulans] gi|54039494|sp|Q8T3U2.1|RS23_DROME RecName: Full=40S ribosomal protein S23 gi|19528293|gb|AAL90261.1| GM14585p [Drosophila melanogaster] gi|21645412|gb|AAF58277.2| ribosomal protein S23 [Drosophila melanogaster] gi|54636940|gb|EAL26343.1| GA21060 [Drosophila pseudoobscura pseudoobscura] gi|190620776|gb|EDV36300.1| GF12897 [Drosophila ananassae] gi|190658851|gb|EDV56064.1| GG22436 [Drosophila erecta] gi|193903305|gb|EDW02172.1| GH20043 [Drosophila grimshawi] gi|193910471|gb|EDW09338.1| GI20452 [Drosophila mojavensis] gi|194113425|gb|EDW35468.1| GL17287 [Drosophila persimilis] gi|194125781|gb|EDW47824.1| GM20223 [Drosophila sechellia] gi|194145497|gb|EDW61893.1| GJ22302 [Drosophila virilis] gi|194159195|gb|EDW74096.1| GK21747 [Drosophila willistoni] gi|194177378|gb|EDW90989.1| GE12328 [Drosophila yakuba] gi|194193476|gb|EDX07052.1| GD25696 [Drosophila simulans] gi|220944562|gb|ACL84824.1| RpS23-PA [synthetic construct] gi|220954440|gb|ACL89763.1| RpS23-PA [synthetic construct] Back     alignment and taxonomy information
>gi|38048731|gb|AAR10268.1| similar to Drosophila melanogaster CG8415, partial [Drosophila yakuba] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query143
FB|FBgn0033912143 RpS23 "Ribosomal protein S23" 1.0 1.0 0.972 1.4e-71
ZFIN|ZDB-GENE-080220-50143 rps23 "ribosomal protein S23" 1.0 1.0 0.902 1.8e-64
UNIPROTKB|Q3T199143 RPS23 "40S ribosomal protein S 1.0 1.0 0.895 7.6e-64
UNIPROTKB|J9NZX6143 RPS23 "Uncharacterized protein 1.0 1.0 0.895 7.6e-64
UNIPROTKB|P62266143 RPS23 "40S ribosomal protein S 1.0 1.0 0.895 7.6e-64
UNIPROTKB|F2Z512143 RPS23 "40S ribosomal protein S 1.0 1.0 0.895 7.6e-64
MGI|MGI:1913725143 Rps23 "ribosomal protein S23" 1.0 1.0 0.895 7.6e-64
RGD|621039143 Rps23 "ribosomal protein S23" 1.0 1.0 0.895 7.6e-64
UNIPROTKB|E1BEQ3143 E1BEQ3 "Uncharacterized protei 1.0 1.0 0.888 2e-63
UNIPROTKB|F1NDC2145 RPS23 "Uncharacterized protein 0.993 0.979 0.894 2.6e-63
FB|FBgn0033912 RpS23 "Ribosomal protein S23" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 724 (259.9 bits), Expect = 1.4e-71, P = 1.4e-71
 Identities = 139/143 (97%), Positives = 141/143 (98%)

Query:     1 MGKPRGIRTARKHVNNRRVQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAK 60
             MGKPRG+RTARKHVN+RR QRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAK
Sbjct:     1 MGKPRGLRTARKHVNHRRDQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAK 60

Query:    61 QPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRF 120
             QPNSAIRKCVRVQLIKNGKKITAFVPRDG LNYIEENDEVLVAGFGRKGHAVGDIPGVRF
Sbjct:    61 QPNSAIRKCVRVQLIKNGKKITAFVPRDGSLNYIEENDEVLVAGFGRKGHAVGDIPGVRF 120

Query:   121 KVVKVANVSLLALYKEKKERPRS 143
             KVVKVANVSLLALYKEKKERPRS
Sbjct:   121 KVVKVANVSLLALYKEKKERPRS 143
GO:0006412 "translation" evidence=ISS
GO:0003735 "structural constituent of ribosome" evidence=ISS;IDA
GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS
GO:0005840 "ribosome" evidence=IDA
GO:0051298 "centrosome duplication" evidence=IMP
GO:0051297 "centrosome organization" evidence=IMP
ZFIN|ZDB-GENE-080220-50 rps23 "ribosomal protein S23" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q3T199 RPS23 "40S ribosomal protein S23" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|J9NZX6 RPS23 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P62266 RPS23 "40S ribosomal protein S23" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z512 RPS23 "40S ribosomal protein S23" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1913725 Rps23 "ribosomal protein S23" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|621039 Rps23 "ribosomal protein S23" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1BEQ3 E1BEQ3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1NDC2 RPS23 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P79057RS23_SCHPONo assigned EC number0.74821.01.0yesN/A
Q6EV23RS23_PAPDANo assigned EC number0.96501.01.0N/AN/A
Q12WT0RS12_METBUNo assigned EC number0.56420.97200.9788yesN/A
Q90YQ1RS23_ICTPUNo assigned EC number0.89511.01.0N/AN/A
P49201RS232_ARATHNo assigned EC number0.79720.99301.0yesN/A
Q9HLY2RS12_THEACNo assigned EC number0.58820.94400.9507yesN/A
Q6L0R4RS12_PICTONo assigned EC number0.55140.94400.9507yesN/A
Q19877RS23_CAEELNo assigned EC number0.83211.01.0yesN/A
A5ULM8RS12_METS3No assigned EC number0.56200.95100.9645yesN/A
O27129RS12_METTHNo assigned EC number0.57660.95100.9645yesN/A
P11524RS12_SULACNo assigned EC number0.53950.96500.9387yesN/A
Q8TXJ2RS12_METKANo assigned EC number0.61150.96500.9387yesN/A
Q8T3U2RS23_DROMENo assigned EC number0.97201.01.0yesN/A
Q9DFR4RS23_GILMINo assigned EC number0.85311.01.0N/AN/A
Q8SR65RS23_ENCCUNo assigned EC number0.61760.95100.9714yesN/A
P62266RS23_HUMANNo assigned EC number0.89511.01.0yesN/A
P62267RS23_MOUSENo assigned EC number0.89511.01.0yesN/A
Q873W8RS23_ASPFUNo assigned EC number0.80280.99300.9793yesN/A
Q97CD8RS12_THEVONo assigned EC number0.58080.94400.9507yesN/A
Q9GRJ3RS23_LUMRUNo assigned EC number0.92301.01.0N/AN/A
Q55A19RS23_DICDINo assigned EC number0.76590.98600.9860yesN/A
Q86FP7RS23_DERVANo assigned EC number0.95801.01.0N/AN/A
P0CX29RS23A_YEASTNo assigned EC number0.76050.99300.9793yesN/A
P62268RS23_RATNo assigned EC number0.89511.01.0yesN/A
Q9SF35RS231_ARATHNo assigned EC number0.77620.99301.0yesN/A
Q9M5Z9RS23_EUPESNo assigned EC number0.80410.99301.0N/AN/A
P90707RS23_BRUMANo assigned EC number0.87411.01.0N/AN/A
Q8I7D5RS23_CIOINNo assigned EC number0.84611.01.0yesN/A
P0CX30RS23B_YEASTNo assigned EC number0.76050.99300.9793yesN/A
Q0W8G5RS12_UNCMANo assigned EC number0.58200.93000.9366yesN/A
P62298RS23_CHILANo assigned EC number0.89511.01.0N/AN/A
Q9HE74RS23_NEUCRNo assigned EC number0.79570.99300.9793N/AN/A
Q6YIA3RS23_SACBANo assigned EC number0.76050.99300.9793N/AN/A
P06147RS12_TETTHNo assigned EC number0.70710.97200.9788N/AN/A
Q8TRC1RS12_METACNo assigned EC number0.61710.88810.8943yesN/A
Q962Q7RS23_SPOFRNo assigned EC number0.96501.01.0N/AN/A
P0CY40RS23B_NAUCCNo assigned EC number0.76050.99300.9793yesN/A
A0RUR2RS12_CENSYNo assigned EC number0.61420.97200.9586yesN/A
Q464Z1RS12_METBFNo assigned EC number0.59370.88810.8943yesN/A
Q6SA96RS23_PIGNo assigned EC number0.88811.01.0yesN/A
Q3T199RS23_BOVINNo assigned EC number0.89511.01.0yesN/A
Q8PUR5RS12_METMANo assigned EC number0.60930.88810.8943yesN/A
P0CY39RS23A_NAUCCNo assigned EC number0.76050.99300.9793yesN/A
Q6FLA8RS23_CANGANo assigned EC number0.76050.99300.9793yesN/A
A0B562RS12_METTPNo assigned EC number0.58990.96500.9718yesN/A
O28387RS12_ARCFUNo assigned EC number0.57660.95100.9577yesN/A
P46297RS23_FRAANNo assigned EC number0.81810.99301.0N/AN/A
A3DMP8RS12_STAMFNo assigned EC number0.57550.96500.9387yesN/A
Q2NEK8RS12_METSTNo assigned EC number0.56930.95100.9645yesN/A
P39573RS12_SULSONo assigned EC number0.54670.96500.9387yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query143
PTZ00067143 PTZ00067, PTZ00067, 40S ribosomal S23; Provisional 3e-95
cd03367115 cd03367, Ribosomal_S23, S12-like family, 40S ribos 2e-78
PRK04211145 PRK04211, rps12P, 30S ribosomal protein S12P; Revi 2e-63
TIGR00982139 TIGR00982, S23_S12_E_A, ribosomal protein S23 (S12 2e-51
COG0048129 COG0048, RpsL, Ribosomal protein S12 [Translation, 2e-41
cd0031995 cd00319, Ribosomal_S12_like, Ribosomal protein S12 5e-40
pfam00164122 pfam00164, Ribosomal_S12, Ribosomal protein S12 1e-39
cd03368108 cd03368, Ribosomal_S12, S12-like family, 30S ribos 8e-12
CHL00051123 CHL00051, rps12, ribosomal protein S12 4e-09
TIGR00981124 TIGR00981, rpsL_bact, ribosomal protein S12, bacte 2e-07
PRK05163124 PRK05163, rpsL, 30S ribosomal protein S12; Validat 2e-07
PTZ00115290 PTZ00115, PTZ00115, 40S ribosomal protein S12; Pro 4e-04
>gnl|CDD|185422 PTZ00067, PTZ00067, 40S ribosomal S23; Provisional Back     alignment and domain information 
 Score =  270 bits (692), Expect = 3e-95
 Identities = 122/143 (85%), Positives = 133/143 (93%)

Query: 1   MGKPRGIRTARKHVNNRRVQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAK 60
           MGKPRG+R ARK   +RRV RWADK+YKKAHLGTR+KANPFGGASHAKGIV+EK+G+EAK
Sbjct: 1   MGKPRGLRAARKLRRHRRVNRWADKEYKKAHLGTRYKANPFGGASHAKGIVVEKIGIEAK 60

Query: 61  QPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRF 120
           QPNSAIRKCVRVQLIKNGKKITAFVP DGCLN+I ENDEVLV+GFGR GHAVGDIPGVRF
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFINENDEVLVSGFGRSGHAVGDIPGVRF 120

Query: 121 KVVKVANVSLLALYKEKKERPRS 143
           KVVKVA VSLLALYK KKE+PR+
Sbjct: 121 KVVKVAGVSLLALYKGKKEKPRN 143

Length = 143
>gnl|CDD|239465 cd03367, Ribosomal_S23, S12-like family, 40S ribosomal protein S23 subfamily; S23 is located at the interface of the large and small ribosomal subunits of eukaryotes, adjacent to the decoding center Back     alignment and domain information
>gnl|CDD|235257 PRK04211, rps12P, 30S ribosomal protein S12P; Reviewed Back     alignment and domain information
>gnl|CDD|130055 TIGR00982, S23_S12_E_A, ribosomal protein S23 (S12) Back     alignment and domain information
>gnl|CDD|223126 COG0048, RpsL, Ribosomal protein S12 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|238196 cd00319, Ribosomal_S12_like, Ribosomal protein S12-like family; composed of prokaryotic 30S ribosomal protein S12, eukaryotic 40S ribosomal protein S23 and similar proteins Back     alignment and domain information
>gnl|CDD|201049 pfam00164, Ribosomal_S12, Ribosomal protein S12 Back     alignment and domain information
>gnl|CDD|239466 cd03368, Ribosomal_S12, S12-like family, 30S ribosomal protein S12 subfamily; S12 is located at the interface of the large and small ribosomal subunits of prokaryotes, chloroplasts and mitochondria, where it plays an important role in both tRNA and ribosomal subunit interactions Back     alignment and domain information
>gnl|CDD|176992 CHL00051, rps12, ribosomal protein S12 Back     alignment and domain information
>gnl|CDD|130054 TIGR00981, rpsL_bact, ribosomal protein S12, bacterial/organelle Back     alignment and domain information
>gnl|CDD|235355 PRK05163, rpsL, 30S ribosomal protein S12; Validated Back     alignment and domain information
>gnl|CDD|240276 PTZ00115, PTZ00115, 40S ribosomal protein S12; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 143
PTZ00067143 40S ribosomal S23; Provisional 100.0
PRK04211145 rps12P 30S ribosomal protein S12P; Reviewed 100.0
TIGR00982139 S23_S12_E_A ribosomal protein S23 (S12). This mode 100.0
KOG1749|consensus143 100.0
cd03367115 Ribosomal_S23 S12-like family, 40S ribosomal prote 100.0
COG0048129 RpsL Ribosomal protein S12 [Translation, ribosomal 100.0
cd0031995 Ribosomal_S12_like Ribosomal protein S12-like fami 100.0
PF00164122 Ribosom_S12_S23: Ribosomal protein S12/S23; InterP 100.0
cd03368108 Ribosomal_S12 S12-like family, 30S ribosomal prote 100.0
PRK05163124 rpsL 30S ribosomal protein S12; Validated 100.0
CHL00051123 rps12 ribosomal protein S12 100.0
TIGR00981124 rpsL_bact ribosomal protein S12, bacterial/organel 100.0
PTZ00115290 40S ribosomal protein S12; Provisional 100.0
KOG1750|consensus139 99.97
TIGR0000868 infA translation initiation factor IF-1. This fami 93.99
COG036175 InfA Translation initiation factor 1 (IF-1) [Trans 92.36
PRK1244287 translation initiation factor IF-1; Reviewed 85.4
smart0065283 eIF1a eukaryotic translation initiation factor 1A. 83.2
cd0445678 S1_IF1A_like S1_IF1A_like: Translation initiation 80.27
>PTZ00067 40S ribosomal S23; Provisional Back     alignment and domain information 
Probab=100.00  E-value=5.3e-74  Score=445.62  Aligned_cols=143  Identities=85%  Similarity=1.350  Sum_probs=141.5

Q ss_pred             CCCCcchhhhHhhhhhhccccccchhhhhhcccccccCCCCCCCCccceeEEeeeeccccCCCcccccEEEEEEeecCeE
Q psy4801           1 MGKPRGIRTARKHVNNRRVQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK   80 (143)
Q Consensus         1 ~~k~~Gl~~arkl~~~r~~~r~~dk~ykk~~lg~~~k~~~l~g~Pq~kGivl~~~~~~pKkPNSA~RK~~rV~L~kngk~   80 (143)
                      |++++||||||+|+++|+++||+|++|++++|++.+|.+||+++||++|||++++++||||||||+||||+|||++||++
T Consensus         1 m~~~~Gl~aarkl~~~r~~~rw~d~~y~k~~lg~~~k~~pl~g~pq~kGivl~~~~~~pKkPNSA~RK~~rV~L~kngk~   80 (143)
T PTZ00067          1 MGKPRGLRAARKLRRHRRVNRWADKEYKKAHLGTRYKANPFGGASHAKGIVVEKIGIEAKQPNSAIRKCVRVQLIKNGKK   80 (143)
T ss_pred             CCCcchhHHHHHHHHHHHHhhhhhHHHHHHhcCCccccCcccCCCccceEEEEEEeecCCCCChhhceEEEEEEccCCcE
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999889999


Q ss_pred             EEEeecCCCccCCcccccEEEEeeecCCCCcCCCCCCceEEEEEeccccHHHHHhhhccCCCC
Q psy4801          81 ITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS  143 (143)
Q Consensus        81 v~A~IPg~G~l~~lqeh~~VLV~G~G~~Gg~v~DlPGVrykvvrv~~vsl~~l~~gkkekp~r  143 (143)
                      |||||||||+||||||||+|||+|||++||+++|||||+|+||+|+||||+|||+||||||+|
T Consensus        81 vtAyiPg~G~lh~lqEh~~VLV~G~Gr~g~~v~DlPGVrykvVrV~~vsL~~l~kgkkekp~r  143 (143)
T PTZ00067         81 ITAFVPNDGCLNFINENDEVLVSGFGRSGHAVGDIPGVRFKVVKVAGVSLLALYKGKKEKPRN  143 (143)
T ss_pred             EEEEeCCCCcccccccCCEEEEEecCcCCCccCCCCceEEEEEEECCEeHHHHHhcccccCCC
Confidence            999999999999999999999999999999999999999999999999999999999999986

>PRK04211 rps12P 30S ribosomal protein S12P; Reviewed Back     alignment and domain information
>TIGR00982 S23_S12_E_A ribosomal protein S23 (S12) Back     alignment and domain information
>KOG1749|consensus Back     alignment and domain information
>cd03367 Ribosomal_S23 S12-like family, 40S ribosomal protein S23 subfamily; S23 is located at the interface of the large and small ribosomal subunits of eukaryotes, adjacent to the decoding center Back     alignment and domain information
>COG0048 RpsL Ribosomal protein S12 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00319 Ribosomal_S12_like Ribosomal protein S12-like family; composed of prokaryotic 30S ribosomal protein S12, eukaryotic 40S ribosomal protein S23 and similar proteins Back     alignment and domain information
>PF00164 Ribosom_S12_S23: Ribosomal protein S12/S23; InterPro: IPR006032 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>cd03368 Ribosomal_S12 S12-like family, 30S ribosomal protein S12 subfamily; S12 is located at the interface of the large and small ribosomal subunits of prokaryotes, chloroplasts and mitochondria, where it plays an important role in both tRNA and ribosomal subunit interactions Back     alignment and domain information
>PRK05163 rpsL 30S ribosomal protein S12; Validated Back     alignment and domain information
>CHL00051 rps12 ribosomal protein S12 Back     alignment and domain information
>TIGR00981 rpsL_bact ribosomal protein S12, bacterial/organelle Back     alignment and domain information
>PTZ00115 40S ribosomal protein S12; Provisional Back     alignment and domain information
>KOG1750|consensus Back     alignment and domain information
>TIGR00008 infA translation initiation factor IF-1 Back     alignment and domain information
>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12442 translation initiation factor IF-1; Reviewed Back     alignment and domain information
>smart00652 eIF1a eukaryotic translation initiation factor 1A Back     alignment and domain information
>cd04456 S1_IF1A_like S1_IF1A_like: Translation initiation factor IF1A-like, S1-like RNA-binding domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query143
2zkq_l143 Structure Of A Mammalian Ribosomal 40s Subunit With 2e-68
3iz6_L142 Localization Of The Small Subunit Ribosomal Protein 6e-62
3izb_L145 Localization Of The Small Subunit Ribosomal Protein 3e-59
3j2k_X144 Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associ 3e-59
3zey_S143 High-resolution Cryo-electron Microscopy Structure 1e-55
2xzm_L142 Crystal Structure Of The Eukaryotic 40s Ribosomal S 4e-53
3j0l_L141 Core Of Mammalian 80s Pre-Ribosome In Complex With 5e-53
1s1h_L118 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 3e-52
3j20_N147 Promiscuous Behavior Of Proteins In Archaeal Riboso 9e-35
3bbn_L123 Homology Model For The Spinach Chloroplast 30s Subu 1e-06
4g5k_O128 Crystal Structure Of The 70s Ribosome With Tetracyc 1e-06
3d5a_L134 Structural Basis For Translation Termination On The 1e-06
1fjg_L135 Structure Of The Thermus Thermophilus 30s Ribosomal 1e-06
3fic_L125 T. Thermophilus 70s Ribosome In Complex With Mrna, 1e-06
2f4v_L132 30s Ribosome + Designer Antibiotic Length = 132 1e-06
1pn7_O124 Coordinates Of S12, L11 Proteins And P-Trna, From T 1e-06
1i94_L131 Crystal Structures Of The Small Ribosomal Subunit W 1e-06
4dr1_L135 Crystal Structure Of The Apo 30s Ribosomal Subunit 1e-05
1zn1_L97 Coordinates Of Rrf Fitted Into Cryo-Em Map Of The 7 5e-05
2gy9_L101 Structure Of The 30s Subunit Of A Pre-Translocation 5e-05
1vs5_L124 Crystal Structure Of The Bacterial Ribosome From Es 5e-05
1p6g_L123 Real Space Refined Coordinates Of The 30s Subunit F 6e-05
>pdb|2ZKQ|LL Chain l, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 143 Back     alignment and structure 
Iteration: 1

 Score =  254 bits (648), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 128/143 (89%), Positives = 133/143 (93%)
Query: 1   MGKPRGIRTARKHVNNRRVQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAK 60
           MGK RG+RTARK  ++RR Q+W DK YKKAHLGT  KANPFGGASHAKGIVLEKVGVEAK
Sbjct: 1   MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
Query: 61  QPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRF 120
           QPNSAIRKCVRVQLIKNGKKITAFVP DGCLN+IEENDEVLVAGFGRKGHAVGDIPGVRF
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 120
Query: 121 KVVKVANVSLLALYKEKKERPRS 143
           KVVKVANVSLLALYK KKERPRS
Sbjct: 121 KVVKVANVSLLALYKGKKERPRS 143
>pdb|3IZ6|L Chain L, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 142 Back     alignment and structure
>pdb|3IZB|L Chain L, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 145 Back     alignment and structure
>pdb|3J2K|X Chain X, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated Termination Complex Length = 144 Back     alignment and structure
>pdb|3ZEY|S Chain S, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 143 Back     alignment and structure
>pdb|2XZM|L Chain L, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 142 Back     alignment and structure
>pdb|3J0L|L Chain L, Core Of Mammalian 80s Pre-Ribosome In Complex With Trnas Fitted To A 9.8a Cryo-Em Map: Classic Pre State 1 Length = 141 Back     alignment and structure
>pdb|1S1H|L Chain L, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is In File 1s1i. Length = 118 Back     alignment and structure
>pdb|3J20|N Chain N, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (30s Ribosomal Subunit) Length = 147 Back     alignment and structure
>pdb|3BBN|L Chain L, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 123 Back     alignment and structure
>pdb|4G5K|O Chain O, Crystal Structure Of The 70s Ribosome With Tetracycline. This Entry Contains The 30s Subunit Of Molecule A. Length = 128 Back     alignment and structure
>pdb|3D5A|L Chain L, Structural Basis For Translation Termination On The 70s Ribosome. This File Contains The 30s Subunit, Release Factor 1 (Rf1), Two Trna, And Mrna Molecules Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes As Described In Remark 400. Length = 134 Back     alignment and structure
>pdb|1FJG|L Chain L, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit In Complex With The Antibiotics Streptomycin, Spectinomycin, And Paromomycin Length = 135 Back     alignment and structure
>pdb|3FIC|L Chain L, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 30s Subunit And The Ligands Length = 125 Back     alignment and structure
>pdb|2F4V|L Chain L, 30s Ribosome + Designer Antibiotic Length = 132 Back     alignment and structure
>pdb|1PN7|O Chain O, Coordinates Of S12, L11 Proteins And P-Trna, From The 70s X- Ray Structure Aligned To The 70s Cryo-Em Map Of E.Coli Ribosome Length = 124 Back     alignment and structure
>pdb|1I94|L Chain L, Crystal Structures Of The Small Ribosomal Subunit With Tetracycline, Edeine And If3 Length = 131 Back     alignment and structure
>pdb|4DR1|L Chain L, Crystal Structure Of The Apo 30s Ribosomal Subunit From Thermus Thermophilus (hb8) Length = 135 Back     alignment and structure
>pdb|1ZN1|L Chain L, Coordinates Of Rrf Fitted Into Cryo-Em Map Of The 70s Post- Termination Complex Length = 97 Back     alignment and structure
>pdb|2GY9|L Chain L, Structure Of The 30s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 101 Back     alignment and structure
>pdb|1VS5|L Chain L, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 124 Back     alignment and structure
>pdb|1P6G|L Chain L, Real Space Refined Coordinates Of The 30s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 123 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query143
3u5c_X145 RP37, S28, YS14, 40S ribosomal protein S23-A; tran 4e-47
2xzm_L142 40S ribosomal protein S12; ribosome, translation; 1e-45
2vqe_L135 30S ribosomal protein S12, 30S ribosomal protein S 6e-09
>3u5c_X RP37, S28, YS14, 40S ribosomal protein S23-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_L 3o30_P 3o2z_P 3u5g_X 3jyv_L* 1s1h_L* 2zkq_l 3iz6_L Length = 145 Back     alignment and structure
 Score =  148 bits (374), Expect = 4e-47
 Identities = 108/142 (76%), Positives = 128/142 (90%)

Query: 2   GKPRGIRTARKHVNNRRVQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQ 61
           GKPRG+ +ARK   +RR  RWA+ +YKK  LGT +K++PFGG+SHAKGIVLEK+G+E+KQ
Sbjct: 4   GKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQ 63

Query: 62  PNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRFK 121
           PNSAIRKCVRVQLIKNGKK+TAFVP DGCLN+++ENDEVL+AGFGRKG A GDIPGVRFK
Sbjct: 64  PNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFK 123

Query: 122 VVKVANVSLLALYKEKKERPRS 143
           VVKV+ VSLLAL+KEKKE+PRS
Sbjct: 124 VVKVSGVSLLALWKEKKEKPRS 145
>2xzm_L 40S ribosomal protein S12; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_L 3j0o_L 3j0l_L 3j0p_L 3j0q_L 3iz6_L 3jyv_L* 1s1h_L* Length = 142 Back     alignment and structure
>2vqe_L 30S ribosomal protein S12, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1gix_O* 1hnw_L* 1hnx_L* 1hnz_L* 1hr0_L 1ibk_L* 1ibl_L* 1ibm_L 1j5e_L 1jgo_O* 1jgp_O* 1jgq_O* 1mj1_O* 1ml5_O* 1mvr_O 1n32_L* 1n33_L* 1n34_L 1n36_L 1xmo_L* ... Length = 135 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query143
3u5c_X145 RP37, S28, YS14, 40S ribosomal protein S23-A; tran 100.0
2xzm_L142 40S ribosomal protein S12; ribosome, translation; 100.0
3j20_N147 30S ribosomal protein S12P; archaea, archaeal, KIN 100.0
2vqe_L135 30S ribosomal protein S12, 30S ribosomal protein S 100.0
>3u5c_X RP37, S28, YS14, 40S ribosomal protein S23-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_L 3o30_P 3o2z_P 3u5g_X 3j2k_X 3jyv_L* 1s1h_L* 2zkq_l 3iz6_L Back     alignment and structure
Probab=100.00  E-value=1.1e-75  Score=454.78  Aligned_cols=143  Identities=76%  Similarity=1.230  Sum_probs=141.2

Q ss_pred             CCCCcchhhhHhhhhhhccccccchhhhhhcccccccCCCCCCCCccceeEEeeeeccccCCCcccccEEEEEEeecCeE
Q psy4801           1 MGKPRGIRTARKHVNNRRVQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK   80 (143)
Q Consensus         1 ~~k~~Gl~~arkl~~~r~~~r~~dk~ykk~~lg~~~k~~~l~g~Pq~kGivl~~~~~~pKkPNSA~RK~~rV~L~kngk~   80 (143)
                      ||+|+||||||+|+++|++|||+|++|+++||++++|++||+|+||++|||++++++||||||||+||||||||++||++
T Consensus         3 ~~k~~Gl~aarkl~~~r~~~rw~dk~ykk~~lg~~~K~~~l~g~pq~kGivl~~~~~~pKkPNSA~RK~arV~L~kngk~   82 (145)
T 3u5c_X            3 KGKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKK   82 (145)
T ss_dssp             CSSCCCSSCHHHHHHHHHHHHTTSHHHHHHHHTHHHHSSSSCSSSEEEEEEEEEEBCBCCTTCCCBCCEEEEEETTTCCE
T ss_pred             CCccCcHHHHHHHHHHHHHhhhhhhHHHHHhcCcccccCccCCCCccCeEEEEEeecccCCCCccceeEEEEEEccCCCE
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999889999


Q ss_pred             EEEeecCCCccCCcccccEEEEeeecCCCCcCCCCCCceEEEEEeccccHHHHHhhhccCCCC
Q psy4801          81 ITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS  143 (143)
Q Consensus        81 v~A~IPg~G~l~~lqeh~~VLV~G~G~~Gg~v~DlPGVrykvvrv~~vsl~~l~~gkkekp~r  143 (143)
                      ||||||||||||||||||+|||+|||++||+++|||||+|+||||+||||+|||+||||||++
T Consensus        83 vtAyIPg~G~l~~lqEh~~VLV~G~G~~Gg~v~DlPGVrykvVrv~~vsl~al~kgkkekp~~  145 (145)
T 3u5c_X           83 VTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS  145 (145)
T ss_dssp             EEEECCSSSCGGGCCTTCEEEEECCSSSSSCCSSSTTCCEEEEESTTTCHHHHHHTSCCCCCC
T ss_pred             EEEEeCCCCccccCCcCCEEEEEeccccCCccCCCCceeEEEEEECCeeHHHHHhccccCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999985
>2xzm_L 40S ribosomal protein S12; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_L 3j0o_L 3j0l_L 3j0p_L 3j0q_L 3iz6_L 3jyv_L* 1s1h_L* Back     alignment and structure
>3j20_N 30S ribosomal protein S12P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>2vqe_L 30S ribosomal protein S12, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1gix_O* 1hnw_L* 1hnx_L* 1hnz_L* 1hr0_L 1ibk_L* 1ibl_L* 1ibm_L 1j5e_L 1jgo_O* 1jgp_O* 1jgq_O* 1mj1_O* 1ml5_O* 1mvr_O 1n32_L* 1n33_L* 1n34_L 1n36_L 1xmo_L* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 143
d2uubl1118 b.40.4.5 (L:5-122) Ribosomal protein S12 {Thermus 1e-19
>d2uubl1 b.40.4.5 (L:5-122) Ribosomal protein S12 {Thermus thermophilus [TaxId: 274]} Length = 118 Back     information, alignment and structure

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Ribosomal protein S12
species: Thermus thermophilus [TaxId: 274]

 Score = 76.7 bits (189), Expect = 1e-19
 Identities = 35/109 (32%), Positives = 62/109 (56%), Gaps = 11/109 (10%)

Query: 35  RWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYI 94
           + K     GA   +G+      V  K+PNSA+RK  +V+ + +G ++TA++P +G  + +
Sbjct: 17  KSKVPALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVR-LTSGYEVTAYIPGEG--HNL 73

Query: 95  EENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143
           +E+  VL+     +G  V D+PGVR+ +V+   V   A  K++K+  RS
Sbjct: 74  QEHSVVLI-----RGGRVKDLPGVRYHIVR--GVYDAAGVKDRKKS-RS 114

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query143
d2uubl1118 Ribosomal protein S12 {Thermus thermophilus [TaxId 100.0
d1ah9a_71 Translational initiation factor 1, IF1 {Escherichi 88.29
>d2uubl1 b.40.4.5 (L:5-122) Ribosomal protein S12 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Ribosomal protein S12
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=9.7e-46  Score=277.39  Aligned_cols=99  Identities=34%  Similarity=0.573  Sum_probs=89.6

Q ss_pred             ccccCCCCCCCCccceeEEeeeeccccCCCcccccEEEEEEeecCeEEEEeecCCCccCCcccccEEEEeeecCCCCcCC
Q psy4801          34 TRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVG  113 (143)
Q Consensus        34 ~~~k~~~l~g~Pq~kGivl~~~~~~pKkPNSA~RK~~rV~L~kngk~v~A~IPg~G~l~~lqeh~~VLV~G~G~~Gg~v~  113 (143)
                      .+.|+++|+++||++|||+++++++|||||||+||||+|+| +||++||||||||||  ||||||+|||||     |+++
T Consensus        16 ~k~k~~aL~~~PqkkGvc~kv~~~~PKKPNSA~RKvarVrL-sng~~v~AyIPG~Gh--nlqEHs~VLvrG-----Grv~   87 (118)
T d2uubl1          16 KKSKVPALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRL-TSGYEVTAYIPGEGH--NLQEHSVVLIRG-----GRVK   87 (118)
T ss_dssp             CCCSCCCTTTCSCEEEEEEEEEEECCCTTCCSCEEEEEEEE-TTSCEEEEECCSSCC--CCCTTCEEEECC-----CCCT
T ss_pred             cCCCCcccccCCccceEEEEEEEeccCCCcceeeeEEEEEe-cCCeEEEEEcCCCCc--CcccCCEEEEeC-----Cccc
Confidence            34678999999999999999999999999999999999999 899999999999997  999999999997     9999


Q ss_pred             CCCCceEEEEEeccccHHHHHhhhccCCC
Q psy4801         114 DIPGVRFKVVKVANVSLLALYKEKKERPR  142 (143)
Q Consensus       114 DlPGVrykvvrv~~vsl~~l~~gkkekp~  142 (143)
                      |||||+|+|||+  +.-.+-+.++++..+
T Consensus        88 DlPGVry~vvrG--~~D~~~v~~Rk~~RS  114 (118)
T d2uubl1          88 DLPGVRYHIVRG--VYDAAGVKDRKKSRS  114 (118)
T ss_dssp             TSTTCCEEBCTT--STTCCCCTTCCSSTT
T ss_pred             cCCCcEEEEEee--eeccccccccccccC
Confidence            999999999985  444555777777643
>d1ah9a_ b.40.4.5 (A:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure